Citrus Sinensis ID: 001041
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1178 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FWX7 | 1278 | ABC transporter B family | yes | no | 0.946 | 0.872 | 0.736 | 0.0 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.952 | 0.872 | 0.743 | 0.0 | |
| Q9M1Q9 | 1296 | ABC transporter B family | no | no | 0.949 | 0.862 | 0.734 | 0.0 | |
| Q9FWX8 | 1273 | ABC transporter B family | no | no | 0.960 | 0.888 | 0.715 | 0.0 | |
| Q9SYI3 | 1230 | ABC transporter B family | no | no | 0.943 | 0.903 | 0.681 | 0.0 | |
| Q9SYI2 | 1229 | ABC transporter B family | no | no | 0.938 | 0.899 | 0.684 | 0.0 | |
| Q9M0M2 | 1236 | ABC transporter B family | no | no | 0.943 | 0.898 | 0.626 | 0.0 | |
| Q9FHF1 | 1248 | ABC transporter B family | no | no | 0.945 | 0.892 | 0.586 | 0.0 | |
| Q9LJX0 | 1252 | ABC transporter B family | no | no | 0.946 | 0.890 | 0.434 | 0.0 | |
| Q54BT3 | 1397 | ABC transporter B family | yes | no | 0.970 | 0.818 | 0.419 | 0.0 |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1697 bits (4396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1135 (73%), Positives = 990/1135 (87%), Gaps = 20/1135 (1%)
Query: 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV 102
+VPFYKLF FADS+D LMI GSIGAIGNG+ LP MTLLFGDLI++FG NQNN + VD V
Sbjct: 40 TVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKDIVDVV 99
Query: 103 SKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGE 162
SKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR YLKTILRQD+ FFD ETNTGE
Sbjct: 100 SKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGE 159
Query: 163 VVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222
VVGRMSGDTVLIQDAMGEKVGKF+QL++TF+GGF++AFIKGWLLTLVML+SIPLLAM+G
Sbjct: 160 VVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGA 219
Query: 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282
MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+++YKKF+ +AYKS +Q
Sbjct: 220 AMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQ 279
Query: 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASP 342
+G + G+GLG++ + F SYAL++W+GGK+ILE+GY GG V+NV++ V+ GSMSLG+ SP
Sbjct: 280 QGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSP 339
Query: 343 CLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIF 402
C++AF AGQAAA+KMFETI RKP IDAYD GK+L+DIRGDIEL+DV+FSYPARP+E+IF
Sbjct: 340 CVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIF 399
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462
GFS+ I SG TAALVG+SGSGKSTVISLIERFYDP++G VLIDG+NLKEFQL+WIR KI
Sbjct: 400 DGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKI 459
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
GLVSQEPVLF+ SI +NIAYGK++AT EEI+ ATELANAAKFIDKLPQG+DT+VGEHGTQ
Sbjct: 460 GLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQ 519
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDR+MVNRTTVIVAHRLS
Sbjct: 520 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLS 579
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISM 642
TVRNADMIAVIHRGK+VEKG+HS+L++D EGAYSQLIRLQE NK+ + SE+S
Sbjct: 580 TVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDV-------KTSELSS 632
Query: 643 -ESLRHSSHRMSLRRSISRGSSIGNSSRHS----ISVSFGLPSGQFADTALGEPAGPSQP 697
S R+S +L++S+ SS+GNSSRH + ++ GL G + A + G +
Sbjct: 633 GSSFRNS----NLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTA-- 686
Query: 698 TEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELK 757
++E P+V R+A LNKPEIPV+L GT+AA NG I P++G+LIS VIE FFKP HELK
Sbjct: 687 SQEPLPKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELK 746
Query: 758 KDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEH 817
+DSRFWA+I++ALG S ++SP Q Y FAVAG KLI+RIRSMCFEK +HMEV+WFDEP++
Sbjct: 747 RDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQN 806
Query: 818 SSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877
SSG +GARLSADA +RALVGDAL+ VQN+++AA+GLIIAFTASW+LALIILVMLPLIG
Sbjct: 807 SSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIG 866
Query: 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMK 937
++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFCAEEKVMQ+YKK+CE P+K
Sbjct: 867 INGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIK 926
Query: 938 TGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGIS 997
GI+QG +SG GFG SFF+LF YA SFYAGARLVEDGK TF++VF+VFF+LTM AIGIS
Sbjct: 927 DGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGIS 986
Query: 998 QSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPD 1057
QSS+F+ DS+KAK AAASIFAIIDR+SKID SDE+GT+LE+VKG+IEL H+SF YP+RPD
Sbjct: 987 QSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPD 1046
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117
+Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRFYDPD+GHITLDGVE++KLQLKWL
Sbjct: 1047 IQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWL 1106
Query: 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEIQAASEMANAHKFICSLQQ 1170
RQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI AA+E+ANAHKFI S+QQ
Sbjct: 1107 RQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQ 1161
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1690 bits (4376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 841/1131 (74%), Positives = 988/1131 (87%), Gaps = 9/1131 (0%)
Query: 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV 102
+VPFYKLF FADS D LMI+G++G+IGNGL PLMTLLFGDLI+ FG+NQ N T DKV
Sbjct: 45 TVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQTN--TTDKV 102
Query: 103 SKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGE 162
SKVA+KFV+LGIG+ A+FLQ++ WMI+GERQA RIR LYLKTILRQD+AFFD +TNTGE
Sbjct: 103 SKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGE 162
Query: 163 VVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222
VVGRMSGDTVLIQDAMGEKVGK +QL+ATF+GGF+IAF++GWLLTLVMLSSIPLL M+G
Sbjct: 163 VVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGA 222
Query: 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282
++AI+I+K +SRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+SNY K LVTAYK+GV
Sbjct: 223 LLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVI 282
Query: 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASP 342
EG + G+GLG + L+VFCSYAL+VWYGGKLIL++GY GGQV+N+++AVLTGSMSLG+ SP
Sbjct: 283 EGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSP 342
Query: 343 CLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIF 402
CLSAF AGQAAA+KMFETI R+P ID+Y T GK+LDDI+GDIEL+DVYF+YPARP+EQIF
Sbjct: 343 CLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIF 402
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462
GFS+ ISSGTT ALVGQSGSGKSTV+SLIERFYDPQAG+VLIDGINLKEFQL+WIR KI
Sbjct: 403 RGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKI 462
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
GLVSQEPVLFT SIKDNIAYGK+DATTEEI+ A ELANA+KF+DKLPQG+DT+VGEHGTQ
Sbjct: 463 GLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQ 522
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGGQKQRIA+ARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNRTTV+VAHRLS
Sbjct: 523 LSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLS 582
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISM 642
TVRNADMIAVIH+GKIVEKG+H++L++DPEGAYSQLIRLQE K E + Q+ S S+
Sbjct: 583 TVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAAEEQKMS--SI 640
Query: 643 ESLRHSSHRM-SLRRSISR-GSSIGNSSRHSISVSFGLPSGQFADTALG-EPAGPSQPTE 699
ES + SS R SL RS+S+ GSS GNSSRHS ++ FG P+G + E +QP
Sbjct: 641 ESFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNM-FGFPAGIDGNVVQDQEEDDTTQPKT 699
Query: 700 EVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKD 759
E +V R+A LNKPEIPV++ G+I+A ANGVILPI+G+LISSVI+ FF+PP +LK+D
Sbjct: 700 E-PKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQPPKKLKED 758
Query: 760 SRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSS 819
+ FWA+I++ LG S + PAQ++FFA+AG KL+QRIRSMCFEKV+HMEV WFDEPE+SS
Sbjct: 759 TSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPENSS 818
Query: 820 GAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVS 879
G IGARLSADAA++R LVGD+LA+ VQN+S+ AGLIIAF A WQLA ++L MLPLI ++
Sbjct: 819 GTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLIALN 878
Query: 880 GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG 939
G+ MKFMKGFSADAK Y EASQVANDAVGSIRTVASFCAE+KVM +Y KKCE PMK G
Sbjct: 879 GFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPMKNG 938
Query: 940 IRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQS 999
IRQG+VSG GFG SFF+LF+ YAASFY GARLV+DGK TF VF+VFF+LTM A+ ISQS
Sbjct: 939 IRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQS 998
Query: 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQ 1059
SS S DS+KA AAASIFAI+DRESKIDPS ESG +L++VKG+IEL HVSFKYP+RPDVQ
Sbjct: 999 SSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPARPDVQ 1058
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
+F+DL L IRAGKTVALVGESGSGKSTV++LLQRFYDPD+G ITLDGVEI+ L+LKWLRQ
Sbjct: 1059 IFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKWLRQ 1118
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
Q GLVSQEP+LFN+TIRANIAYGKGGDA+E+EI +++E++NAH FI LQQ
Sbjct: 1119 QTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQ 1169
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1674 bits (4335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 834/1136 (73%), Positives = 981/1136 (86%), Gaps = 18/1136 (1%)
Query: 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSET 98
EKT++VPF+KLF FADS D LMI+G+IGA+GNGL P+MT+LFGD+I+ FG NQN+S+
Sbjct: 58 EKTKTVPFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSDV 117
Query: 99 VDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNET 158
DK++KVA+KFVYLG+G+ +A+ LQV+ WMI+GERQA RIR LYL+TILRQD+AFFD ET
Sbjct: 118 SDKIAKVALKFVYLGLGTLVAALLQVSGWMISGERQAGRIRSLYLQTILRQDIAFFDVET 177
Query: 159 NTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLA 218
NTGEVVGRMSGDTVLIQDAMGEKVGK +QL++TF+GGF+IAF +GWLLTLVM+SSIPLL
Sbjct: 178 NTGEVVGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIPLLV 237
Query: 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278
MSG +AI+ISKM+SRGQ +YAKAA VVEQT+GSIRTVASFTGEKQA+SNY K LV+AY+
Sbjct: 238 MSGAALAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNYNKHLVSAYR 297
Query: 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG 338
+GV EG + G+GLG + +++FC+YAL+VWYGGK+ILE+GY GGQV+ ++ AVLTGSMSLG
Sbjct: 298 AGVFEGASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFAVLTGSMSLG 357
Query: 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPN 398
+ASPCLSAF AGQAAA+KMFE I RKPEIDA DT GK+LDDIRGDIEL +V FSYPARP
Sbjct: 358 QASPCLSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYPARPE 417
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
EQIF GFS+SISSG+T ALVGQSGSGKSTV+SLIERFYDPQ+GEV IDGINLKEFQL+WI
Sbjct: 418 EQIFRGFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKEFQLKWI 477
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R KIGLVSQEPVLFT SIK+NIAYGK++AT EEIR ATELANA+KFIDKLPQG+DT+VGE
Sbjct: 478 RSKIGLVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVGE 537
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
HGTQLSGGQKQRIA+ARAILKDPRILLLDEATSALDAESE++VQEALDRIMVNRTTV+VA
Sbjct: 538 HGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVA 597
Query: 579 HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKS 638
HRLSTVRNADMIAVIH+GKIVEKG+HS+L+ DPEGAYSQLIRLQE K++E + D Q+
Sbjct: 598 HRLSTVRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDSTDEQK-- 655
Query: 639 EISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPT 698
+SMES++ SS R S S S FG P+G DT A P +
Sbjct: 656 -LSMESMKRSSLRKSSLSRSLSKRSSSFS-------MFGFPAG--IDT--NNEAIPEKDI 703
Query: 699 EEVAP----EVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH 754
+ P +V R+A LNKPEIP+++ G+IAA+ NGVILPI+G+LISSVI+ FFKPP
Sbjct: 704 KVSTPIKEKKVSFFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFFKPPE 763
Query: 755 ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDE 814
+LK D+RFWA+I++ LG S ++ PAQ+ FF++AG KL+QRIRSMCFEKV+ MEV WFDE
Sbjct: 764 QLKSDTRFWAIIFMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDE 823
Query: 815 PEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874
E+SSGAIGARLSADAA+VR LVGDALA+ VQN+++ AGL+IAF ASWQLA I+L MLP
Sbjct: 824 TENSSGAIGARLSADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLP 883
Query: 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934
LIG++GY MKFM GFSADAK YEEASQVANDAVGSIRTVASFCAEEKVM++YKKKCE
Sbjct: 884 LIGLNGYIYMKFMVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEG 943
Query: 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
PM+TGIRQG+VSG GFG SFF+LF+ YAASFYAGARLV+DGK TF VF+VFF+LTM A+
Sbjct: 944 PMRTGIRQGIVSGIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALTMAAV 1003
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
ISQSSS S DS+KA +AAASIFA+IDRESKIDPSDESG +L++VKG+IEL H+SFKYPS
Sbjct: 1004 AISQSSSLSPDSSKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFKYPS 1063
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
RPDVQ+F+DL L IRAGKT+ALVGESGSGKSTV++LLQRFYDPD+G ITLDGVEI+ LQL
Sbjct: 1064 RPDVQIFQDLCLSIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKTLQL 1123
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
KWLRQQ GLVSQEPVLFN+TIRANIAYGKGGDATE EI +A+E++NAH FI LQQ
Sbjct: 1124 KWLRQQTGLVSQEPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQ 1179
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1654 bits (4282), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/1153 (71%), Positives = 972/1153 (84%), Gaps = 22/1153 (1%)
Query: 30 HDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTF 89
H+ K EK ++VP YKLF FADS D LMI GS+GAIGNG+CLPLMTLLFGDLI++F
Sbjct: 14 HEHSTSKTDEKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPLMTLLFGDLIDSF 73
Query: 90 GDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQ 149
G NQNN + VD VSKV +KFVYLG+G A+FLQV CWMITGERQA +IR YLKTILRQ
Sbjct: 74 GKNQNNKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITGERQAAKIRSNYLKTILRQ 133
Query: 150 DVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLV 209
D+ FFD ETNTGEVVGRMSGDTV IQDAMGEKVGKF+QL++TF+GGF +AF KGWLLTLV
Sbjct: 134 DIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGFALAFAKGWLLTLV 193
Query: 210 MLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNY 269
ML+SIP LAM+G MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+++Y
Sbjct: 194 MLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSY 253
Query: 270 KKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVA 329
KK++ +AYKS +Q+G + G+GLG+++ + F SYAL++W+GGK+ILE+GY GG V+NV++
Sbjct: 254 KKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGKMILEKGYTGGSVINVIII 313
Query: 330 VLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDV 389
V+ GSMSLG+ SPC++AF AGQAAA+KMFETI RKP IDAYD GK+L DIRGDIEL+DV
Sbjct: 314 VVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGDIRGDIELKDV 373
Query: 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449
+FSYPARP+E+IF GFS+ I SG TAALVG+SGSGKSTVI+LIERFYDP+AGEVLIDGIN
Sbjct: 374 HFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIERFYDPKAGEVLIDGIN 433
Query: 450 LKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLP 509
LKEFQL+WIR KIGLV QEPVLF+ SI +NIAYGK++AT +EI+VATELANAAKFI+ LP
Sbjct: 434 LKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQEIKVATELANAAKFINNLP 493
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
QG+DT VGEHGTQLSGGQKQRIAIARAILKDPR+LLLDEATSALD ESE+VVQEALDR+M
Sbjct: 494 QGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVM 553
Query: 570 VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESE 629
VNRTTV+VAHRLSTVRNADMIAVIH GK+VEKG+HS+L++D GAYSQLIR QE NK
Sbjct: 554 VNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIRCQEINKGH- 612
Query: 630 QTIDGQRKSEISMESLRHSSHRMSLRRSISRG--SSIGNSSRHSISVSFGLPSGQFADTA 687
D + S S R+S+ +S S+ G SS GNSSRH GL FA
Sbjct: 613 ---DAKPSDMASGSSFRNSNLNISREGSVISGGTSSFGNSSRHHSLNVLGL----FAGLD 665
Query: 688 LG--------EPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYG 739
LG E G + ++E +V R+A LNKPEIPV+L GT+ A NG I P++G
Sbjct: 666 LGSGSQRVGQEETGTT--SQEPLRKVSLTRIAALNKPEIPVLLLGTVVAAINGAIFPLFG 723
Query: 740 LLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM 799
+LIS VIE FFKP +LKKDSRFWA+I++ALG S ++SP+Q Y FAVAG KLI+RI+SM
Sbjct: 724 ILISRVIEAFFKPADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAGGKLIRRIQSM 783
Query: 800 CFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAF 859
CFEK +HMEVSWFDEPE+SSG +GARLS DAA +RALVGDAL+ VQN ++AA+GLIIAF
Sbjct: 784 CFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAASAASGLIIAF 843
Query: 860 TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFC 919
TASW+LALIILVMLPLIG++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFC
Sbjct: 844 TASWELALIILVMLPLIGINGFLQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFC 903
Query: 920 AEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATF 979
AEEKVMQ+Y K+CE P+K G++QG +SG GFG SFF+LF YA SFYA ARLVEDGK TF
Sbjct: 904 AEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAAARLVEDGKTTF 963
Query: 980 SDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDV 1039
DVF+VFF+LTM AIGISQSS+F+ DS+KAK AAASIFAIIDR+SKID SDE+GT+LE+V
Sbjct: 964 IDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENV 1023
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
KG+IEL H+SF YP+RP +Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRFYDPD+
Sbjct: 1024 KGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDS 1083
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEIQAASE 1157
G ITLDGVE++KLQLKWLRQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI AA+E
Sbjct: 1084 GQITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAE 1143
Query: 1158 MANAHKFICSLQQ 1170
+ANAHKFI S+QQ
Sbjct: 1144 LANAHKFISSIQQ 1156
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI3|AB5B_ARATH ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1595 bits (4131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 776/1139 (68%), Positives = 948/1139 (83%), Gaps = 28/1139 (2%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
+KG T++VPFYKLF F+DS D LMI+GSIGAI NG+C PLMTLLFG+LI+ G N
Sbjct: 2 KKGNLEANTKTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPN 61
Query: 93 QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVA 152
QNN E V++VSKV + VYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+
Sbjct: 62 QNNEEIVERVSKVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIG 121
Query: 153 FFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS 212
FFD E TGEVVGRMSGDTVLI DAMGEKVGKF+QL++TF+GGF+IAF++GWLLTLVML+
Sbjct: 122 FFDVEMTTGEVVGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLT 181
Query: 213 SIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF 272
SIPLLAMSG +AI++++ SS+ Q AYAKA++VVEQT+GSIRTVASFTGEKQAMS+YK+
Sbjct: 182 SIPLLAMSGAAIAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKEL 241
Query: 273 LVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332
+ AYKS V++G G+GLG++ L+ F +YAL W+GG++IL +GY GG V+NVMV V++
Sbjct: 242 INLAYKSNVKQGFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVS 301
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
S++LG+ASPCL+AF AG+AAA+KMFETI R+P ID +D GK+L+DIRG+IELRDV FS
Sbjct: 302 SSIALGQASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFS 361
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YPARP E++F GFS+ I SGTT ALVG+SGSGKSTVISLIERFYDP +G+VLIDG++LKE
Sbjct: 362 YPARPKEEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKE 421
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
FQL+WIR KIGLVSQEPVLF+ SI +NI YGK+ AT EEI+ A++LANAAKFIDKLP G+
Sbjct: 422 FQLKWIRGKIGLVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGL 481
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNR
Sbjct: 482 ETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNR 541
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTI 632
TTVIVAHRLSTVRNAD+IAVIHRGKIVE+G+HS+L++D EGAYSQL+RLQE NKES+
Sbjct: 542 TTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESK--- 598
Query: 633 DGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPA 692
R S+ SRG++ S SV GL +GQ
Sbjct: 599 -------------RLEISDGSISSGSSRGNNSTRQDDDSFSV-LGLLAGQ---------- 634
Query: 693 GPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKP 752
++ ++E++ +V R+A LNKPEIP+++ GT+ NG I PI+G+L + VIE FFK
Sbjct: 635 DSTKMSQELSQKVSFTRIAALNKPEIPILILGTLVGAVNGTIFPIFGILFAKVIEAFFKA 694
Query: 753 PHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWF 812
PHELK+DSRFW++I++ LG + ++ P +Y FA+AG +LI+RIRSMCFEKV+HMEV WF
Sbjct: 695 PHELKRDSRFWSMIFVLLGVAAVIVYPTTNYLFAIAGGRLIRRIRSMCFEKVVHMEVGWF 754
Query: 813 DEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVM 872
DEP +SSGA+GARLSADAA +R LVGD+L V+N+++ GLIIAFTASW++A+IILV+
Sbjct: 755 DEPGNSSGAMGARLSADAALIRTLVGDSLCLSVKNVASLVTGLIIAFTASWEVAIIILVI 814
Query: 873 LPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKC 932
+P IG++GY Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFCAEEKVM++YKK+C
Sbjct: 815 IPFIGINGYIQIKFMKGFSADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRC 874
Query: 933 EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMT 992
E +K+GI+QG++SG GFG SFF+L++ YA+ FY GARLV+ G+ F+DVF+VF +LT+T
Sbjct: 875 EDTIKSGIKQGLISGVGFGISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTLT 934
Query: 993 AIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY 1052
A+GISQ+SSF+ DS+K K AA SIF IIDR SKID DESG +LE+VKG+IEL H+SF Y
Sbjct: 935 AVGISQASSFAPDSSKGKGAAVSIFRIIDRISKIDSRDESGMVLENVKGDIELCHISFTY 994
Query: 1053 PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+RPDVQVFRDL L IRAG+TVALVGESGSGKSTV+SLLQRFYDPD+GHITLDGVE++KL
Sbjct: 995 QTRPDVQVFRDLCLSIRAGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKL 1054
Query: 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQ 1170
+LKWLRQQMGLV QEPVLFNDTIRANIAYGKGG +ATEAEI AASE+ANAH+FI S+Q+
Sbjct: 1055 RLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGGEEATEAEIIAASELANAHRFISSIQK 1113
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI2|AB3B_ARATH ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1546 bits (4003), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 778/1137 (68%), Positives = 954/1137 (83%), Gaps = 32/1137 (2%)
Query: 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSET 98
EKT++VPFYKLF+F+DS D LMI+GSIGAIGNG+ PLMTLLFGDLI++ G NQ+N +
Sbjct: 3 EKTKTVPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDI 62
Query: 99 VDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNET 158
V+ VSKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+ FFD ET
Sbjct: 63 VEIVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVET 122
Query: 159 NTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLA 218
+TGEVVGRMSGDTVLI +AMGEKVGKF+QL+ATF+GGF++AF+KGWLLTLVML SIPLLA
Sbjct: 123 STGEVVGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLA 182
Query: 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278
++G M I++++ SSR Q AYAKA++VVEQT+GSIRTVASFTGEKQAM +Y++F+ AY+
Sbjct: 183 IAGAAMPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYR 242
Query: 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG 338
+ V++G + G+GLG+V + FCSYAL++W+GG++IL++GY GG+VVNVMV V+ SMSLG
Sbjct: 243 ASVKQGFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLG 302
Query: 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPN 398
+ +PCL+AF AG+AAA+KMFETI RKP IDA+D GK+L+DIRG+IELRDV FSYPARP
Sbjct: 303 QTTPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPM 362
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
E++F GFS+ I SG TAALVG+SGSGKS+VISLIERFYDP +G VLIDG+NLKEFQL+WI
Sbjct: 363 EEVFGGFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWI 422
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R KIGLVSQEPVLF+ SI +NI YGK++AT EEI+ A +LANAA FIDKLP+G++TLVGE
Sbjct: 423 RGKIGLVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGE 482
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDR+M++RTTVIVA
Sbjct: 483 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVA 542
Query: 579 HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKS 638
HRLSTVRNADMIAVIHRGKIVE+G+HS+L++D EGAY+QLIRLQ+ KE ++
Sbjct: 543 HRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEP-------KRL 595
Query: 639 EISMESLRHSSHRMSLRRSISRGSSIGNSSR----HSISVSFGLPSGQFADTALGEPAGP 694
E S E LR RSI+RGSS +R S+SV GL LG
Sbjct: 596 ESSNE-LRD--------RSINRGSSRNIRTRVHDDDSVSV-LGL---------LGRQEN- 635
Query: 695 SQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH 754
++ + E + V R+A LNKPE +++ GT+ NG I PI+G+L + VIE FFKPPH
Sbjct: 636 TEISREQSRNVSITRIAALNKPETTILILGTLLGAVNGTIFPIFGILFAKVIEAFFKPPH 695
Query: 755 ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDE 814
++K+DSRFW++I++ LG S ++ P +Y FAVAG +LIQRIR MCFEKV+HMEV WFD+
Sbjct: 696 DMKRDSRFWSMIFVLLGVASLIVYPMHTYLFAVAGGRLIQRIRVMCFEKVVHMEVGWFDD 755
Query: 815 PEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874
PE+SSG IG+RLSADAA ++ LVGD+L+ V+N + A +GLIIAFTASW+LA+IILVM+P
Sbjct: 756 PENSSGTIGSRLSADAALIKTLVGDSLSLSVKNAAAAVSGLIIAFTASWKLAVIILVMIP 815
Query: 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934
LIG++GY Q+KF+KGF+ADAK KYEEASQVANDAVGSIRTVASFCAEEKVM++YKK+CE
Sbjct: 816 LIGINGYLQIKFIKGFTADAKAKYEEASQVANDAVGSIRTVASFCAEEKVMEMYKKRCED 875
Query: 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
+K+GI+QG++SG GFG SFF+L++ YA+ FY GARLV+ G+ F+DVF+VF +LTMTAI
Sbjct: 876 TIKSGIKQGLISGVGFGISFFVLYSVYASCFYVGARLVKAGRTNFNDVFQVFLALTMTAI 935
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
GISQ+SSF+ DS+KAK AAASIF IID +S ID DESG +LE+VKG+IEL H+SF Y +
Sbjct: 936 GISQASSFAPDSSKAKGAAASIFGIIDGKSMIDSRDESGLVLENVKGDIELCHISFTYQT 995
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
RPDVQ+FRDL IRAG+TVALVGESGSGKSTV+SLLQRFYDPD+GHITLD VE++KLQL
Sbjct: 996 RPDVQIFRDLCFAIRAGQTVALVGESGSGKSTVISLLQRFYDPDSGHITLDRVELKKLQL 1055
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD-ATEAEIQAASEMANAHKFICSLQQ 1170
KW+RQQMGLV QEPVLFNDTIR+NIAYGKGGD A+EAEI AA+E+ANAH FI S+QQ
Sbjct: 1056 KWVRQQMGLVGQEPVLFNDTIRSNIAYGKGGDEASEAEIIAAAELANAHGFISSIQQ 1112
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M0M2|AB9B_ARATH ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1417 bits (3669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 720/1150 (62%), Positives = 889/1150 (77%), Gaps = 39/1150 (3%)
Query: 29 EHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINT 88
E S K K + V F+KLF+FAD D LM +G+I A GNGL P MTL+FG LIN
Sbjct: 2 EEKSSK-KNDGGNQKVSFFKLFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINA 60
Query: 89 FGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILR 148
FG + V +V KVAVKF+YL + S + +FLQV+CWM+TGERQ+ IRGLYLKTILR
Sbjct: 61 FG-TTDPDHMVREVWKVAVKFIYLAVYSCVVAFLQVSCWMVTGERQSATIRGLYLKTILR 119
Query: 149 QDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208
QD+ +FD ETNTGEV+GRMSGDT+LIQDAMGEKVGKF QL+ TFLGGF IAF KG LL
Sbjct: 120 QDIGYFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFTQLLCTFLGGFAIAFYKGPLLAG 179
Query: 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSN 268
V+ S IPL+ ++G M++++SKM+ RGQ AYA+A +VVEQT+G+IRTV +FTGEKQA
Sbjct: 180 VLCSCIPLIVIAGAAMSLIMSKMAGRGQVAYAEAGNVVEQTVGAIRTVVAFTGEKQATEK 239
Query: 269 YKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMV 328
Y+ L AYK+ VQ+GL +G GLG ++ ++FCSY L+VWYG KLI+E+GYNGGQV+NV+
Sbjct: 240 YESKLEIAYKTVVQQGLISGFGLGTMLAVIFCSYGLAVWYGAKLIMEKGYNGGQVINVIF 299
Query: 329 AVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRD 388
AVLTG MSLG+ SP L+AF AG+AAAFKMFETI R P+IDAYD G +L+DIRGDIEL+D
Sbjct: 300 AVLTGGMSLGQTSPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKD 359
Query: 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448
VYF YPARP+ QIF+GFS+ + +G T ALVGQSGSGKSTVISLIERFYDP++G+VLID I
Sbjct: 360 VYFRYPARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNI 419
Query: 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508
+LK+ QL+WIR KIGLVSQEPVLF +IK+NIAYGK+DAT +EIR A ELANAAKFIDKL
Sbjct: 420 DLKKLQLKWIRSKIGLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKL 479
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
PQG+DT+VGEHGTQ+SGGQKQR+AIARAILK+P+ILLLDEATSALDAESE++VQ+AL +
Sbjct: 480 PQGLDTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNL 539
Query: 569 MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKES 628
M NRTTV+VAHRL+T+R AD+IAV+H+GKIVEKGTH ++++DPEGAYSQL+RLQE +K
Sbjct: 540 MSNRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSK-- 597
Query: 629 EQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTAL 688
E+ + +R E S++ R S R+S S + + S SF L S F
Sbjct: 598 EEATESER-PETSLDVERSGSLRLS-----SAMRRSVSRNSSSSRHSFSLASNMFF---- 647
Query: 689 GEPAGPSQPTEEVAPE--------VPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGL 740
P T+E+ E V +RLA+LNKPEIPV++ G+IAAM +G + PI+GL
Sbjct: 648 --PGVNVNQTDEMEDEENNVRHKKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGL 705
Query: 741 LISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMC 800
L+SS I F++P LKKDS FWALIY+ALG +F++ P Q+YFF +AG KLI+RIRSMC
Sbjct: 706 LLSSSINMFYEPAKILKKDSHFWALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMC 765
Query: 801 FEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT 860
F+KV+H E+SWFD D A+ R+LVGDALA IVQNI+T GLIIAFT
Sbjct: 766 FDKVVHQEISWFD---------------DTANSRSLVGDALALIVQNIATVTTGLIIAFT 810
Query: 861 ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCA 920
A+W LALI+L + P I + GY Q KF+ GFSADAK YEEASQVANDAV SIRTVASFCA
Sbjct: 811 ANWILALIVLALSPFIVIQGYAQTKFLTGFSADAKAMYEEASQVANDAVSSIRTVASFCA 870
Query: 921 EEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFS 980
EEKVM LY++KC+ P K G+R G++SG GFG SFF L+ F +GA L++ GKATF
Sbjct: 871 EEKVMDLYQQKCDGPKKNGVRLGLLSGAGFGFSFFFLYCINCVCFVSGAGLIQIGKATFG 930
Query: 981 DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK 1040
+VFKVFF+LT+ AIG+SQ+S+ + DSNKAK +AASIF I+D KID S + GT L++V
Sbjct: 931 EVFKVFFALTIMAIGVSQTSAMAPDSNKAKDSAASIFDILDSTPKIDSSSDEGTTLQNVN 990
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G+IE HVSF+YP RPDVQ+FRDL L I +GKTVALVGESGSGKSTV+S+++RFY+PD+G
Sbjct: 991 GDIEFRHVSFRYPMRPDVQIFRDLCLTIPSGKTVALVGESGSGKSTVISMIERFYNPDSG 1050
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
I +D VEIQ +L WLRQQMGLVSQEP+LFN+TIR+NIAYGK G ATE EI AA++ AN
Sbjct: 1051 KILIDQVEIQTFKLSWLRQQMGLVSQEPILFNETIRSNIAYGKTGGATEEEIIAAAKAAN 1110
Query: 1161 AHKFICSLQQ 1170
AH FI SL Q
Sbjct: 1111 AHNFISSLPQ 1120
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF1|AB7B_ARATH ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1387 bits (3590), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/1132 (58%), Positives = 878/1132 (77%), Gaps = 18/1132 (1%)
Query: 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDK 101
+ + FYKLFTFAD D LM+IG++ A+ NGL P M++L G LIN FG + ++ +
Sbjct: 16 QRIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFS-DHDHVFKE 74
Query: 102 VSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTG 161
VSKVAVKF+YL +G+ SFLQV+CWM+TGERQ+TRIR LYLKTILRQD+ FFD ETNTG
Sbjct: 75 VSKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTILRQDIGFFDTETNTG 134
Query: 162 EVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221
EV+GRMSGDT+LIQD+MGEKVGKF QL+++F+GGF +AFI G LTL +L +PL+ +G
Sbjct: 135 EVIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLTLALLPCVPLIVGTG 194
Query: 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281
G M ++SK + R Q AY +A +VV+Q +GSIRTV +FTGEKQ+M Y+K L AYKS V
Sbjct: 195 GAMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMGKYEKKLEIAYKSMV 254
Query: 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS 341
++GL +G+G+G++M++V+C+Y ++WYG + I+E+GY GGQV+NV+ ++LTG M+LG+
Sbjct: 255 KQGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVITSILTGGMALGQTL 314
Query: 342 PCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQI 401
P L++F AG AAA+KMFETI RKP+IDAYD G++L++I+GDIELRDVYF YPARP+ QI
Sbjct: 315 PSLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELRDVYFRYPARPDVQI 374
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461
F GFS+++ +G T ALVGQSGSGKSTVISLIERFYDP++GEVLIDGI+LK+FQ++WIR K
Sbjct: 375 FVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRSK 434
Query: 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521
IGLVSQEP+LF +I++NI YGK DA+ +EIR A +LANA+ FIDKLPQG++T+VGEHGT
Sbjct: 435 IGLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGT 494
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581
QLSGGQKQRIAIARAILK+P+ILLLDEATSALDAESE++VQ+AL ++M++RTTV+VAHRL
Sbjct: 495 QLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRL 554
Query: 582 STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEIS 641
+T+R ADMIAV+ +GK++EKGTH ++++DPEG YSQL+RLQE +K+ E K E+S
Sbjct: 555 TTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKKEEAIDKEPEKCEMS 614
Query: 642 MESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD-TALGEPAGPSQPTEE 700
+E I S +++ GLP D T S T+
Sbjct: 615 LE--------------IESSDSQNGIHSGTLTSPSGLPGVISLDQTEEFHENISSTKTQT 660
Query: 701 V--APEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKK 758
V EV RRLA+LNKPEI V+L G++AA+ +G++ P+ GLL+S I FF+P ++LK
Sbjct: 661 VKKGKEVSLRRLAHLNKPEISVLLLGSLAAVIHGIVFPVQGLLLSRTIRIFFEPSNKLKN 720
Query: 759 DSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHS 818
DS FWALI++ALG ++ P Q+Y FA+AG KLI+RIRS+ F++V+H ++SWFD+ ++S
Sbjct: 721 DSLFWALIFVALGLTDLIVIPLQNYLFAIAGAKLIKRIRSLSFDRVLHQDISWFDDTKNS 780
Query: 819 SGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878
SG IGARLS DA++V+++VGD L I+QN++T IIAFTA+W LAL+ L++ P++
Sbjct: 781 SGVIGARLSTDASTVKSIVGDVLGLIMQNMATIIGAFIIAFTANWLLALMALLVAPVMFF 840
Query: 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938
GY Q+KF+ GF A A+ KYEEASQVA+DAV SIRTVASFCAE+KVM LY++KC+ P +
Sbjct: 841 QGYYQIKFITGFGAKARGKYEEASQVASDAVSSIRTVASFCAEDKVMDLYQEKCDEPKQQ 900
Query: 939 GIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQ 998
G + G+VSG +G S+ L+ + F G+ L+++ +ATF + F+VFF+LT+TA+G++Q
Sbjct: 901 GFKLGLVSGLCYGGSYLALYVIESVCFLGGSWLIQNRRATFGEFFQVFFALTLTAVGVTQ 960
Query: 999 SSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDV 1058
+S+ + D NKAK +AASIF I+D + KID S E GTIL V G+IEL HVSF+YP RPD+
Sbjct: 961 TSTMAPDINKAKDSAASIFDILDSKPKIDSSSEKGTILPIVHGDIELQHVSFRYPMRPDI 1020
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
Q+F DL L I +G+TVALVGESGSGKSTV+SLL+RFYDPD+G I LD VEIQ L+L WLR
Sbjct: 1021 QIFSDLCLTISSGQTVALVGESGSGKSTVISLLERFYDPDSGKILLDQVEIQSLKLSWLR 1080
Query: 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
+QMGLVSQEPVLFN+TI +NIAYGK G ATE EI A++ AN H FI SL Q
Sbjct: 1081 EQMGLVSQEPVLFNETIGSNIAYGKIGGATEEEIITAAKAANVHNFISSLPQ 1132
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LJX0|AB19B_ARATH ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 958 bits (2476), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/1139 (43%), Positives = 729/1139 (64%), Gaps = 24/1139 (2%)
Query: 37 QTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNN- 95
+ +K +S+PF+KLF+FAD D LM +GS+GAI +G +P+ LLFG ++N FG NQ +
Sbjct: 17 EKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDL 76
Query: 96 SETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFD 155
+ V +VS+ ++ FVYLG+ +S+ ++ CWM +GERQ +R YL+ +L+QDV FFD
Sbjct: 77 HQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFD 136
Query: 156 NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIP 215
+ TG++V +S DT+L+QDA+ EKVG F+ ++TFL G ++ F+ W L L+ ++ IP
Sbjct: 137 TDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIP 196
Query: 216 LLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVT 275
+A +GG+ A ++ ++S+ + +YA A + EQ I +RTV S+ GE +A++ Y +
Sbjct: 197 GIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQY 256
Query: 276 AYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSM 335
K G + G+A G+GLG I S+AL WY G I +GG+ + + + G M
Sbjct: 257 TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGM 316
Query: 336 SLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395
SLG++ L AF G+AA +K+ E IN++P I GK LD + G+IE +DV FSYP+
Sbjct: 317 SLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPS 376
Query: 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455
RP+ IF F+I SG T A+VG SGSGKSTV+SLIERFYDP +G++L+DG+ +K QL
Sbjct: 377 RPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQL 436
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515
+++R++IGLV+QEP LF +I +NI YGK DAT E+ A ANA FI LP+G DT
Sbjct: 437 KFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQ 496
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575
VGE G QLSGGQKQRIAIARA+LKDP+ILLLDEATSALDA SE +VQEALDR+MV RTTV
Sbjct: 497 VGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTV 556
Query: 576 IVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
+VAHRL T+RN D IAVI +G++VE GTH +L+ GAY+ LIR QE + +
Sbjct: 557 VVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQEMVGTRDFSNPST 615
Query: 636 RKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPS 695
R++ + S S+ +SLR R ++S+ +G AD + +
Sbjct: 616 RRTRSTRLSHSLSTKSLSLRSGSLR------------NLSYSYSTG--ADGRIEMISNAE 661
Query: 696 QPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE 755
+ APE RL LN PE P + G + ++ +G I P + +++S++IE F+ ++
Sbjct: 662 TDRKTRAPENYFYRLLKLNSPEWPYSIMGAVGSILSGFIGPTFAIVMSNMIEVFYYTDYD 721
Query: 756 -LKKDSRFWALIYLALG---AGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811
+++ ++ + IY+ G G++L+ Q YFF++ G L R+R M ++ EV W
Sbjct: 722 SMERKTKEYVFIYIGAGLYAVGAYLI---QHYFFSIMGENLTTRVRRMMLSAILRNEVGW 778
Query: 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871
FDE EH+S I ARL+ DAA V++ + + ++ I+QN+++ I+AF W+++L+IL
Sbjct: 779 FDEDEHNSSLIAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILG 838
Query: 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931
PL+ ++ + Q +KGF+ D + + S +A + V +IRTVA+F A+ K++ L+ +
Sbjct: 839 TFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQSKILSLFCHE 898
Query: 932 CEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTM 991
P K + + SG FG S L+ A + GA LV G +TFS V KVF L +
Sbjct: 899 LRVPQKRSLYRSQTSGFLFGLSQLALYGSEALILWYGAHLVSKGVSTFSKVIKVFVVLVI 958
Query: 992 TAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFK 1051
TA ++++ S + + + A S+F+++DR+++IDP D +E ++G+IE HV F
Sbjct: 959 TANSVAETVSLAPEIIRGGEAVGSVFSVLDRQTRIDPDDADADPVETIRGDIEFRHVDFA 1018
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
YPSRPDV VFRD NL+IRAG + ALVG SGSGKS+V+++++RFYDP AG + +DG +I++
Sbjct: 1019 YPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRR 1078
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
L LK LR ++GLV QEP LF TI NIAYGK G ATE+E+ A+ ANAH FI L +
Sbjct: 1079 LNLKSLRLKIGLVQQEPALFAATIFDNIAYGKDG-ATESEVIDAARAANAHGFISGLPE 1136
|
Auxin efflux transporter that acts as a negative regulator of light signaling to promote hypocotyl elongation. Mediates the accumulation of chlorophyll and anthocyanin, as well as the expression of genes in response to light. Participates in auxin efflux and thus regulates the polar auxin basipetal transport (from auxin-producing leaves to auxin-sensitive tissues, and from root tips to root elongating zone). Involved in divers auxin-mediated responses including gravitropism, phototropism and lateral root formation. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q54BT3|ABCB2_DICDI ABC transporter B family member 2 OS=Dictyostelium discoideum GN=abcB2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 954 bits (2465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 509/1212 (41%), Positives = 759/1212 (62%), Gaps = 69/1212 (5%)
Query: 20 GKDSSMSGNEHDSEKGKQTEKTE-----SVPFYKLFTFADSADTALMIIGSIGAIGNGLC 74
G DS + + S+K + EK E VPF+ LF FA D LMIIG+IGA+ NG+
Sbjct: 94 GGDSVKTLSTTQSKKLDEGEKKEGEVGPQVPFFSLFRFAKPFDILLMIIGTIGALANGVS 153
Query: 75 LPLMTLLFGDLINTFGDNQ---NNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITG 131
+P ++++FG L+N+F N + V+ V+ A+ F+Y+G G + S+++V WM+ G
Sbjct: 154 MPAISIVFGRLMNSFSPENLADPNFDLVETVTSNAMYFIYIGCGVFVCSYVEVAFWMLAG 213
Query: 132 ERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMAT 191
ERQA R R YLK IL+Q++ ++D T + E+ R+S DT+L Q+A+GEK+G FL +T
Sbjct: 214 ERQAVRCRKAYLKAILKQEIGWYD-VTKSSELSTRISSDTLLFQEAIGEKIGNFLHHTST 272
Query: 192 FLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIG 251
F+ GF++ F+ GW LTLV+ + PL+A +G M M++ ++ +GQ AYAKA V E+ IG
Sbjct: 273 FICGFIVGFVNGWQLTLVIFALTPLIAAAGAFMTKMMADLTKKGQDAYAKAGGVAEEKIG 332
Query: 252 SIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGK 311
SIRTV++F+GE + Y + L A G ++G+ GIG+G+V L++F +Y+LS WYGGK
Sbjct: 333 SIRTVSTFSGEPFEVKRYTERLKEALDIGTKKGIMNGIGIGLVFLVLFGTYSLSFWYGGK 392
Query: 312 LILEEGYN--------GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363
LI++ +N GG V+ V +V+ G+M+LG+ASP +++F G+ AAFK++E ++R
Sbjct: 393 LIVDRKWNPVPDRPWQGGDVLTVFFSVIMGAMALGQASPNVASFANGRGAAFKIYEVVDR 452
Query: 364 KPEIDAYDTKGKILDD-IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
+ID + T+G+ +++ ++G+IE R++ FSYP+RP+ +IF+ F+++I GTT ALVG SG
Sbjct: 453 NSKIDPFSTEGRSIEETVQGNIEYRNIGFSYPSRPDVKIFNNFNLTIKKGTTVALVGDSG 512
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
GKS+VI L+ERFYDP GEV +DG N+KE + +R+ IGLVSQEPVLF SI +NI Y
Sbjct: 513 GGKSSVIGLLERFYDPDEGEVYLDGTNIKEINIHSLRRNIGLVSQEPVLFANSIAENIRY 572
Query: 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
G ++AT ++I A + ANA FI LP+G DT VGE G Q+SGGQKQRIAIARA++KDP+
Sbjct: 573 GNENATMDQIIEACKTANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAIARAMIKDPK 632
Query: 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
ILLLDEATSALD+++E +VQ++++++M+ RTT+++AHRLST+++AD IAV+ G IVE G
Sbjct: 633 ILLLDEATSALDSQNELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVVKGGAIVEIG 692
Query: 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHS--SHRMSLRRSISR 660
TH +L G Y+QL+ Q+ + ++ E S + ++ +S+ +SI
Sbjct: 693 THPELYA-LNGVYTQLVNRQQKGGDDGDKKKKKKSKESSKDESNNNIGPSSISIDKSIQ- 750
Query: 661 GSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPV 720
SIG S + ++ G D + + VP R+ L++ + P
Sbjct: 751 --SIGADSLETSTI------GLVNDN--DNKKKKKKEKKPQEKSVPIGRILKLSRGDWPH 800
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETF-FKPPHELKKDSRFWALIYLALGAGSFLLSP 779
L G + A NG I+P++ ++ S ++ F + EL + SR AL ++ L + L +
Sbjct: 801 FLIGLVGATLNGAIMPVFSIIFSEILGIFQEQDTDELTRRSRNMALWFILLAVVAALANF 860
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
Q Y F G KL +R + FE ++ ++ WFD E+S+G + A L+ +A V+ +
Sbjct: 861 IQIYCFTFIGEKLTFNLRRLSFESIMRQDIGWFDLTENSTGRLTANLATEATLVQGMTSQ 920
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
L ++QNI T AGL+IAF + W+L L++L +P+IG +G +M F +GFS K Y
Sbjct: 921 RLGLLIQNIVTIVAGLVIAFVSGWKLTLVVLACVPVIGFAGKVEMDFFQGFSQKGKEAYA 980
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
E QVA++A+G IRTV+SF E K+++ +++ + P++ R+ VSG FG S LF
Sbjct: 981 ECGQVASEAIGGIRTVSSFTCENKILEKFRQCLQKPIQMSFRKSNVSGLSFGFSQCTLFF 1040
Query: 960 FYAASFYAGARLVEDGK-------------------------AT----------FSDVFK 984
Y +++ G +LV+ G+ AT FS + +
Sbjct: 1041 IYTLTYWYGGKLVDSGEWPAKESTLETYCYNGEYANIGYTDEATCIKSFTTTEGFSMMMR 1100
Query: 985 VFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIE 1044
VFF++ M+A+G+ QS +F D KAK AA +IF++IDR S+IDP + G L + KG+IE
Sbjct: 1101 VFFAIIMSAMGVGQSMAFMPDLGKAKLAAVAIFSLIDRVSEIDPFENKGQTLPEFKGDIE 1160
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
+ F YPSRP+ VF+ NL I GK VALVG SG GKS+V+SLL+RFY+P G IT+
Sbjct: 1161 FKDIKFSYPSRPNKAVFQGFNLVIPHGKKVALVGNSGGGKSSVISLLERFYNPSQGSITI 1220
Query: 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKF 1164
DGV I+ L L WLR MGLV QEP LF+ TI NI YGK DAT E+ A++ ANAH F
Sbjct: 1221 DGVNIKDLNLNWLRGNMGLVGQEPFLFSGTIFENIIYGK-PDATMDEVVEAAKAANAHTF 1279
Query: 1165 ICSLQQVRTSRL 1176
I SL ++L
Sbjct: 1280 IESLPDAYHTQL 1291
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1178 | ||||||
| 224130858 | 1294 | multidrug/pheromone exporter, MDR family | 0.987 | 0.898 | 0.765 | 0.0 | |
| 225437787 | 1297 | PREDICTED: ABC transporter B family memb | 0.991 | 0.900 | 0.766 | 0.0 | |
| 224130846 | 1294 | multidrug/pheromone exporter, MDR family | 0.988 | 0.900 | 0.752 | 0.0 | |
| 224064756 | 1224 | multidrug/pheromone exporter, MDR family | 0.938 | 0.902 | 0.788 | 0.0 | |
| 356499544 | 1282 | PREDICTED: ABC transporter B family memb | 0.983 | 0.904 | 0.768 | 0.0 | |
| 356533485 | 1282 | PREDICTED: ABC transporter B family memb | 0.983 | 0.903 | 0.771 | 0.0 | |
| 255548261 | 1269 | multidrug resistance protein 1, 2, putat | 0.969 | 0.899 | 0.755 | 0.0 | |
| 357442065 | 1289 | ABC transporter B family member [Medicag | 0.984 | 0.899 | 0.759 | 0.0 | |
| 255548259 | 1292 | multidrug resistance protein 1, 2, putat | 0.989 | 0.902 | 0.749 | 0.0 | |
| 255548257 | 1292 | multidrug resistance protein 1, 2, putat | 0.990 | 0.903 | 0.746 | 0.0 |
| >gi|224130858|ref|XP_002320942.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861715|gb|EEE99257.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1854 bits (4803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 900/1175 (76%), Positives = 1047/1175 (89%), Gaps = 12/1175 (1%)
Query: 2 NGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALM 61
NG+ + +EAS SKS E K S G++ + K K E+T++VPF KLF+FADS D LM
Sbjct: 8 NGDKSMDEASTSKSLEVEEKSSGGRGDQQEPVKSKGDEETKTVPFLKLFSFADSTDILLM 67
Query: 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121
I+G+IGA+GNG P+M++LFGDL+N+FG NQNN + VD V+KVA+ FVYLGIGS +A+F
Sbjct: 68 ILGTIGAVGNGASFPIMSILFGDLVNSFGQNQNNKDVVDSVTKVALNFVYLGIGSAVAAF 127
Query: 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEK 181
LQV CWM+TGERQA RIRG YLKTIL+QDVAFFD ETNTGEVVGRMSGDTVLIQDAMGEK
Sbjct: 128 LQVACWMVTGERQAARIRGTYLKTILKQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEK 187
Query: 182 VGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAK 241
VGKF+QL++TF+GGF++AF+KGWLLTLVMLSSIPLL ++G +AI+I++M+SRGQ AYAK
Sbjct: 188 VGKFIQLVSTFIGGFIVAFVKGWLLTLVMLSSIPLLVIAGAGLAIIIARMASRGQTAYAK 247
Query: 242 AASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301
AA+VVEQ IGSIRTVASFTGEKQA+SNYKKFL TAY SGVQEG AG+GLG+VML+VFCS
Sbjct: 248 AATVVEQAIGSIRTVASFTGEKQAISNYKKFLATAYNSGVQEGFTAGLGLGIVMLLVFCS 307
Query: 302 YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361
YAL++W+GGK+ILE+GYNGG V+NV+VAVLTGSMSLG+ASPC+SAF AGQAAA+KMFETI
Sbjct: 308 YALAIWFGGKMILEKGYNGGDVINVIVAVLTGSMSLGQASPCMSAFAAGQAAAYKMFETI 367
Query: 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQS 421
NRKPEID+ DT GKILDDI GD+ELRDVYF+YPARP+EQIF+GFS+ I SGTT ALVGQS
Sbjct: 368 NRKPEIDSSDTSGKILDDISGDVELRDVYFTYPARPDEQIFAGFSLFIPSGTTTALVGQS 427
Query: 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481
GSGKSTVISLIERFYDPQAGEVLIDG NLKEFQL+WIR+KIGLVSQEPVLF SIKDNIA
Sbjct: 428 GSGKSTVISLIERFYDPQAGEVLIDGTNLKEFQLKWIREKIGLVSQEPVLFASSIKDNIA 487
Query: 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
YGKD ATTEEIR ATELANAAKFIDKLPQGIDT+VGEHGTQLSGGQKQRIAIARAILKDP
Sbjct: 488 YGKDGATTEEIRAATELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKDP 547
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
RILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRLSTV NADMIAVI+RGK+VEK
Sbjct: 548 RILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVINADMIAVIYRGKMVEK 607
Query: 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661
G+HS+L++DPEGAYSQLIRLQE NKES+Q + +KS +S ESLR SS R+SL+RSISRG
Sbjct: 608 GSHSELLKDPEGAYSQLIRLQEVNKESKQETEDPKKSALSAESLRQSSQRISLKRSISRG 667
Query: 662 SS-IGNSSRHSISVSFGLPSGQFADTALGEPAGPS-----QPTEEVAPEVPTRRLAYLNK 715
SS +G+SSR+S+SVSFGLP+G P P+ P ++ P+VP RLAYLNK
Sbjct: 668 SSGVGHSSRNSLSVSFGLPTG------FNVPDNPTSELEVSPQKQQTPDVPISRLAYLNK 721
Query: 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSF 775
PE+PV++AG+IAA+ NGVILPIYG+L+SSVI+ FF+PP EL+KDS+FWAL+++ LG SF
Sbjct: 722 PEVPVLIAGSIAAILNGVILPIYGILLSSVIKIFFEPPDELRKDSKFWALMFMTLGLASF 781
Query: 776 LLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRA 835
++ P+Q+Y F+VAG KLIQRIRSMCFEKV+HMEV WFDEPEHSSG IGARLSADAA VRA
Sbjct: 782 VVYPSQTYLFSVAGCKLIQRIRSMCFEKVVHMEVGWFDEPEHSSGEIGARLSADAAIVRA 841
Query: 836 LVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK 895
LVGD+L+++VQNI++A AGL+IAF ASWQLAL+ILV+LPLIG++G+ Q+KFMKGFSADAK
Sbjct: 842 LVGDSLSQLVQNIASAVAGLVIAFAASWQLALVILVLLPLIGLNGFVQVKFMKGFSADAK 901
Query: 896 MKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFF 955
YEEASQVANDAVGSIRTVASFCAEEKVMQLY++KCE PM+TGIRQGM+SG GFG SFF
Sbjct: 902 KMYEEASQVANDAVGSIRTVASFCAEEKVMQLYRRKCEGPMRTGIRQGMISGTGFGVSFF 961
Query: 956 LLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAAS 1015
LLF+ YA +FY GA+LV GK F+DVF+VFF+LTM AIGISQSSSF+ DS+KAK AAAS
Sbjct: 962 LLFSVYATTFYVGAQLVRHGKTNFADVFRVFFALTMAAIGISQSSSFAPDSSKAKGAAAS 1021
Query: 1016 IFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVA 1075
IFAIIDR+SKIDPSDESGT L++VKGEIEL H+SFKYPSRPD+++FRDL+L I +GKTVA
Sbjct: 1022 IFAIIDRKSKIDPSDESGTTLDNVKGEIELRHISFKYPSRPDIEIFRDLSLAIHSGKTVA 1081
Query: 1076 LVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135
LVGESGSGKSTV+SLLQRFYDPD+GHITLDG++IQ LQLKWLRQQMGLVSQEPVLFN+TI
Sbjct: 1082 LVGESGSGKSTVISLLQRFYDPDSGHITLDGIDIQSLQLKWLRQQMGLVSQEPVLFNETI 1141
Query: 1136 RANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
RANIAYGK G+ATEAEI AASE+ANAHKFI LQQ
Sbjct: 1142 RANIAYGKEGNATEAEILAASELANAHKFISGLQQ 1176
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225437787|ref|XP_002273987.1| PREDICTED: ABC transporter B family member 11 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1822 bits (4719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 901/1176 (76%), Positives = 1033/1176 (87%), Gaps = 8/1176 (0%)
Query: 1 MNGESNSNEASASKS---QEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSAD 57
+NG++ +EA+ S + E K S +G + DSEK K+ K +VPF+KLF+FADS D
Sbjct: 7 LNGKTYMHEATTSSRGALETETVKSSGQNGKQQDSEKSKEEGKPSTVPFHKLFSFADSTD 66
Query: 58 TALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSG 117
LMI G+IGA GNG+C+PLM +LFGDLI++FG NQNN + VD VSKV++KFVYL +G+G
Sbjct: 67 MLLMITGTIGAAGNGICMPLMAILFGDLIDSFGQNQNNKDVVDIVSKVSLKFVYLAVGAG 126
Query: 118 IASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDA 177
IA+F QV CWM+TGERQA RIR LYLKTILRQDVAFFD ETNTGEV+GRMSGDTVLIQDA
Sbjct: 127 IAAFFQVACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDA 186
Query: 178 MGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQG 237
MGEKVGKF+QL++TF+GGF+IAFIKGWLLTLVMLSSIPLL ++GG M++ +SKM++RGQ
Sbjct: 187 MGEKVGKFIQLVSTFIGGFIIAFIKGWLLTLVMLSSIPLLVIAGGAMSLFLSKMATRGQN 246
Query: 238 AYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297
AYAKAA+VVEQTIGSIRTVASFTGEKQA++ Y +FLV AYKSGV EGLAAG+GLG VM I
Sbjct: 247 AYAKAATVVEQTIGSIRTVASFTGEKQAVTKYNQFLVNAYKSGVFEGLAAGLGLGTVMFI 306
Query: 298 VFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKM 357
+F SYAL+VW+G K+ILE+GY GG V+NV++AVLTGSMSLG+ASPC+SAF AGQAAAFKM
Sbjct: 307 IFASYALAVWFGAKMILEKGYTGGTVLNVIIAVLTGSMSLGQASPCMSAFAAGQAAAFKM 366
Query: 358 FETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAAL 417
F+TI+RKPEID DTKGK L+DI+G+IELRDVYFSYPARP+EQIFSGFS+SI SGTTAAL
Sbjct: 367 FQTIHRKPEIDVSDTKGKKLEDIQGEIELRDVYFSYPARPDEQIFSGFSLSIPSGTTAAL 426
Query: 418 VGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477
VGQSGSGKSTVISLIERFYDP AGEVLIDGINLKEFQL+WIR KIGLVSQEPVLFT SI+
Sbjct: 427 VGQSGSGKSTVISLIERFYDPLAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFTSSIR 486
Query: 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537
DNIAYGK+ AT EEIR A ELANA+KFIDKLPQG+DT+VGEHGTQLSGGQKQR+AIARAI
Sbjct: 487 DNIAYGKEGATIEEIRAAAELANASKFIDKLPQGLDTMVGEHGTQLSGGQKQRVAIARAI 546
Query: 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
LKDPRILLLDEATSALDAESE+VVQEALDRIMVNRTT+IVAHRLSTVRNADMI VIHRGK
Sbjct: 547 LKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTIIVAHRLSTVRNADMIGVIHRGK 606
Query: 598 IVEKGTHSKLVEDPEGAYSQLIRLQEANKESE-QTIDGQRKSEISMESLRHSSHRMSLRR 656
+VEKG+H++L++DPEGAYSQLIRLQE NKESE Q D Q + + S+E R SS RMS R
Sbjct: 607 MVEKGSHTELLKDPEGAYSQLIRLQEVNKESENQATDSQDRPDGSIEFGRQSSQRMSFLR 666
Query: 657 SISRGSS-IGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLN 714
SISRGSS GNSSRHS SVSFGLP+G D A+ + P + E PEVP RRLAYLN
Sbjct: 667 SISRGSSGPGNSSRHSFSVSFGLPTGLGLPDNAIADAEAPR--SSEQPPEVPIRRLAYLN 724
Query: 715 KPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGS 774
KPEIPV+L GT+AA+ NG ILPI+G+LISSVI+TF++PPH+L+KDS FWALI+L LG S
Sbjct: 725 KPEIPVLLLGTVAAIVNGTILPIFGILISSVIKTFYEPPHQLRKDSNFWALIFLVLGVVS 784
Query: 775 FLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVR 834
FL PA++Y F+VAG KLIQR+RSMCFEKV+HMEV WFD+PEHSSGAIGARLSADAA++R
Sbjct: 785 FLAFPARTYLFSVAGCKLIQRVRSMCFEKVVHMEVGWFDQPEHSSGAIGARLSADAATIR 844
Query: 835 ALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADA 894
ALVGDALA++VQN ++A AGL IAF ASWQLA IIL ++PLIG++GY Q+KF+KGFSADA
Sbjct: 845 ALVGDALAQVVQNAASAIAGLAIAFAASWQLAFIILALIPLIGLNGYVQIKFLKGFSADA 904
Query: 895 KMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954
KM YEEASQVANDAVGSIRTVASFCAEEKVM LYKKKCE PM+TGIRQG+VSG GFG SF
Sbjct: 905 KMMYEEASQVANDAVGSIRTVASFCAEEKVMDLYKKKCEGPMRTGIRQGLVSGIGFGVSF 964
Query: 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAA 1014
FLLF YA FYAGARLVE GK TF DVF+VFF+LTM +GISQSSSFS DS+KAKSAAA
Sbjct: 965 FLLFCVYALCFYAGARLVEAGKTTFGDVFRVFFALTMATVGISQSSSFSPDSSKAKSAAA 1024
Query: 1015 SIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTV 1074
SIF IIDR+S IDPSDESGT LE+VKGEIEL H+SFKYP+RPD+Q+FRDL+L IR+GKTV
Sbjct: 1025 SIFTIIDRKSTIDPSDESGTKLENVKGEIELRHISFKYPTRPDIQIFRDLSLTIRSGKTV 1084
Query: 1075 ALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134
ALVGESGSGKSTV++LLQRFYDPD+GHITLDGV+IQ LQL+WLRQQMGLVSQEPVLFNDT
Sbjct: 1085 ALVGESGSGKSTVIALLQRFYDPDSGHITLDGVDIQSLQLRWLRQQMGLVSQEPVLFNDT 1144
Query: 1135 IRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
IRANIAYGK G TEAE+ AASE+ANAHKFI LQQ
Sbjct: 1145 IRANIAYGKEGHTTEAEVIAASELANAHKFISGLQQ 1180
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130846|ref|XP_002320939.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861712|gb|EEE99254.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1818 bits (4708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 883/1173 (75%), Positives = 1029/1173 (87%), Gaps = 8/1173 (0%)
Query: 2 NGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALM 61
NG+ + +EAS SKS E K S G++ + K K E+T++VPF KLF+FADS D LM
Sbjct: 8 NGDKSMDEASTSKSLEVEEKSSGGRGDQQEPVKSKGDEETKTVPFLKLFSFADSTDILLM 67
Query: 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121
I+G+IGA+GNG P+M++LFGDL+N+FG NQNN + VD V+KV++ FVYLGIGS +A+F
Sbjct: 68 ILGTIGAVGNGASFPIMSILFGDLVNSFGQNQNNKDVVDLVTKVSLNFVYLGIGSAVAAF 127
Query: 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEK 181
LQV CWM+TGERQA RIRG YLKTIL+QDVAFFD ETNTGEVVGRMSGDTVLIQDAMGEK
Sbjct: 128 LQVACWMVTGERQAARIRGTYLKTILKQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEK 187
Query: 182 VGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAK 241
VGKF+QL++TF+GGF++AF+KGWLL LVMLSSIPLL +SG +AI+I++M+SRGQ AYAK
Sbjct: 188 VGKFIQLVSTFIGGFIVAFVKGWLLALVMLSSIPLLVISGAGLAIIIARMASRGQTAYAK 247
Query: 242 AASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301
AA+VVEQ IGSIRTVASFTGEKQA+SNYKKFL TAY SGVQEG AG+GLG+VML+VFC+
Sbjct: 248 AATVVEQAIGSIRTVASFTGEKQAISNYKKFLATAYNSGVQEGFTAGLGLGIVMLLVFCT 307
Query: 302 YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361
YAL++W+GGK+ILE+GY GG VVNV++AVLTGSMSLG+ASPC+SAF AGQAAA+KMFETI
Sbjct: 308 YALAIWFGGKMILEKGYTGGDVVNVIIAVLTGSMSLGQASPCMSAFAAGQAAAYKMFETI 367
Query: 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQS 421
NRKPEID+ DT GKILDDI GD+ELRDVYF+YPARP+EQIFSGFS+ I SGTT ALVGQS
Sbjct: 368 NRKPEIDSSDTSGKILDDISGDVELRDVYFTYPARPDEQIFSGFSLFIPSGTTTALVGQS 427
Query: 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481
GSGKSTVISLIERFYDPQAGEVLIDG NLKEFQL+WIR+KIGLVSQEPVLFT SI+DNIA
Sbjct: 428 GSGKSTVISLIERFYDPQAGEVLIDGTNLKEFQLKWIREKIGLVSQEPVLFTSSIRDNIA 487
Query: 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
YGKD ATTEEIR ELANAAKFIDKLPQG+DT+VGEHGTQ+SGGQKQRIAIARAILKDP
Sbjct: 488 YGKDGATTEEIRAVAELANAAKFIDKLPQGLDTMVGEHGTQMSGGQKQRIAIARAILKDP 547
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
RILLLDEATSALDAESE++VQEALDRIMVNRTT+IVAHRLSTVRN D+I+VIH GKIVEK
Sbjct: 548 RILLLDEATSALDAESERIVQEALDRIMVNRTTLIVAHRLSTVRNVDLISVIHHGKIVEK 607
Query: 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRG 661
G+HS+L++DPEGAYSQLIRLQE NKESE + KS+I+MES R SS R+SL RS+SRG
Sbjct: 608 GSHSELLKDPEGAYSQLIRLQEVNKESEHETE-DHKSDITMESFRQSSPRISLERSLSRG 666
Query: 662 SSIGNSSRHSISVSFGLPSGQFA----DTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE 717
SS G + SVS GL + F+ D A GE S + P+ RRLAYLNKPE
Sbjct: 667 SS-GAGNISPFSVSLGLHTAGFSVPDTDNAPGEVEASSHKPK--TPDGLIRRLAYLNKPE 723
Query: 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLL 777
IPV++AG IAA+ NGVI PI+G+L+S+VI+TFF+PPHEL+KDS+FWAL+++ LG SFL+
Sbjct: 724 IPVLIAGAIAAILNGVIFPIFGVLLSNVIKTFFEPPHELRKDSKFWALMFMTLGLASFLV 783
Query: 778 SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALV 837
P Q+Y F+VAG KLIQRIRS+CFEKV+HMEV WFDEPEHSSG IGARLSADAA+VRALV
Sbjct: 784 FPTQTYLFSVAGGKLIQRIRSICFEKVVHMEVGWFDEPEHSSGVIGARLSADAATVRALV 843
Query: 838 GDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMK 897
GD+LA++VQNI++A AGL+IAFTA WQLALIILV++PL+G++G Q+KFMKGFSADAKM
Sbjct: 844 GDSLAQMVQNIASATAGLVIAFTACWQLALIILVLIPLVGLNGIIQIKFMKGFSADAKMM 903
Query: 898 YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957
YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCE PM+TGI+QG++ G GFG SFFLL
Sbjct: 904 YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEGPMETGIKQGLICGTGFGVSFFLL 963
Query: 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017
F+ YA SFYAGA+LV+ GK TF++VF+VFF+LTM AIGISQ+SSF DS+ AK+AAASIF
Sbjct: 964 FSVYATSFYAGAQLVQHGKTTFTEVFRVFFALTMAAIGISQTSSFGPDSSSAKTAAASIF 1023
Query: 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALV 1077
+IIDR+SK+D SDESGT L+ V+GEIELHH+SFKYP+RPD+Q+FRDL+L I +GKTVALV
Sbjct: 1024 SIIDRKSKMDASDESGTKLDSVRGEIELHHISFKYPTRPDIQIFRDLSLVIHSGKTVALV 1083
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137
GESGSGKSTV+SLLQRFYDP +GHITLDGV+IQ LQLKWLRQQMGLVSQEPVLFNDTIRA
Sbjct: 1084 GESGSGKSTVISLLQRFYDPHSGHITLDGVDIQSLQLKWLRQQMGLVSQEPVLFNDTIRA 1143
Query: 1138 NIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
NIAYGK G ATE EI AASE+ANAH FI SLQQ
Sbjct: 1144 NIAYGKQGKATETEILAASELANAHNFISSLQQ 1176
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064756|ref|XP_002301547.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222843273|gb|EEE80820.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1806 bits (4678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 876/1111 (78%), Positives = 1013/1111 (91%), Gaps = 6/1111 (0%)
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
MI+G++GAIGNG +P+M++LFGDLIN+FG NQNN + VD VSKV++KFVYLG+GS + S
Sbjct: 1 MILGTVGAIGNGASMPIMSILFGDLINSFGKNQNNKDVVDLVSKVSLKFVYLGVGSAVGS 60
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQV CWM+TGERQA RIRG YLKTILRQDVAFFD ETN+GEVVGRMSGDTVLIQDAMGE
Sbjct: 61 FLQVACWMVTGERQAARIRGTYLKTILRQDVAFFDKETNSGEVVGRMSGDTVLIQDAMGE 120
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKF+QL++TF+GGF+I+FIKGWLLTLVMLSSIPLL ++G ++IMI++M+SRGQ AY+
Sbjct: 121 KVGKFIQLVSTFIGGFIISFIKGWLLTLVMLSSIPLLVIAGAGLSIMIARMASRGQTAYS 180
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAASVVEQTIGSIRTVASFTGEKQA+SNYKKFLVTAY SGVQEGLAAG+GLG+VML+VFC
Sbjct: 181 KAASVVEQTIGSIRTVASFTGEKQAISNYKKFLVTAYNSGVQEGLAAGVGLGIVMLVVFC 240
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
SYAL+VW+GG++ILE+GY GG V+NV+VAVLTGSMSLG+ASPC+SAF +GQAAA+KMFE
Sbjct: 241 SYALAVWFGGRMILEKGYTGGDVINVIVAVLTGSMSLGQASPCMSAFASGQAAAYKMFEA 300
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
INRKPEIDA DT+GKILDDIRGDIELRDVYF+YPARP+EQIFSGFS+ I SG+TAALVGQ
Sbjct: 301 INRKPEIDASDTRGKILDDIRGDIELRDVYFNYPARPDEQIFSGFSLFIPSGSTAALVGQ 360
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL+WIR+KIGLVSQEPVLFT SIKDNI
Sbjct: 361 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLKWIREKIGLVSQEPVLFTSSIKDNI 420
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGKD ATTEEIR A ELANAAKFIDKLPQGIDT+VGEHGTQLSGGQKQRIAIARAILKD
Sbjct: 421 AYGKDMATTEEIRAAAELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKD 480
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI+RGK+VE
Sbjct: 481 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIYRGKMVE 540
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KG+HS+L++DPEGAYSQLIRLQE NKESEQ D Q+KS+IS ESLRHSS ++SL+RSISR
Sbjct: 541 KGSHSELLKDPEGAYSQLIRLQEVNKESEQEADDQKKSDISTESLRHSSQKISLKRSISR 600
Query: 661 GSS-IGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIP 719
GSS GNSSR S SV+FGLP+G A E S P ++ P+VP RL YLNKPE+P
Sbjct: 601 GSSDFGNSSRRSFSVTFGLPTGFNAPDNYTEELEAS-PQKQQTPDVPISRLVYLNKPEVP 659
Query: 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSP 779
V++AG IAA+ NGVI PI+G+LIS VI+TFF+PPHEL+KDS+FWAL+++ LG SF++ P
Sbjct: 660 VLIAGAIAAIINGVIFPIFGILISRVIKTFFEPPHELRKDSKFWALMFMTLGLASFVVYP 719
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
+Q+Y F+VAG KLIQRIRSMCFEK++HMEV WFDEPEHSSGAIGARLSADAA+VR LVGD
Sbjct: 720 SQTYLFSVAGCKLIQRIRSMCFEKMVHMEVGWFDEPEHSSGAIGARLSADAATVRGLVGD 779
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
+L+++VQNI++A AGL+IAF A WQLA +ILV+LPLIG++G+ QMKF+KGFS+DAK
Sbjct: 780 SLSQLVQNIASAVAGLVIAFVACWQLAFVILVLLPLIGLNGFIQMKFLKGFSSDAK---- 835
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
EASQVANDAVGSIRTVASFCAEEKVMQLY+KKCE PM+TGIRQG++SG GFG SFFLLF+
Sbjct: 836 EASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPMRTGIRQGLISGAGFGVSFFLLFS 895
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAI 1019
YA SFY GA+LV+ GK TF+DVF+VFF+LTM AIGISQSSSF+ DS+KAK+AAASIF+I
Sbjct: 896 VYATSFYVGAQLVQHGKTTFADVFQVFFALTMAAIGISQSSSFAPDSSKAKAAAASIFSI 955
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
IDR+S+ID SDESGT L++VKGEIEL H+ FKYP+RPD+++FRDL+L I +GKTVALVGE
Sbjct: 956 IDRKSQIDSSDESGTTLDNVKGEIELRHIGFKYPARPDIEIFRDLSLAIHSGKTVALVGE 1015
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKSTV+SLLQRFYDP +GHITLDG++I+ LQLKWLRQQMGLVSQEPVLFN+TIRANI
Sbjct: 1016 SGSGKSTVISLLQRFYDPHSGHITLDGIDIKSLQLKWLRQQMGLVSQEPVLFNETIRANI 1075
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
AYGK GDATEAEI AASE+ANAHKFI SLQQ
Sbjct: 1076 AYGKEGDATEAEILAASELANAHKFISSLQQ 1106
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499544|ref|XP_003518599.1| PREDICTED: ABC transporter B family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1803 bits (4669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 899/1170 (76%), Positives = 1030/1170 (88%), Gaps = 11/1170 (0%)
Query: 2 NGESNSN-EASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
NGE + EAS S++ E S N EKGKQ EK E+VPF+KLF FADS D L
Sbjct: 5 NGEERKHHEASTSENSAET------STNGEKREKGKQKEKPETVPFHKLFAFADSTDILL 58
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
M +G+IGAIGNGL LPLMTLLFG +I++FG NQ N+ V++VSKV++KFVYL +GSG+A+
Sbjct: 59 MAVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQQNTHVVEEVSKVSLKFVYLAVGSGMAA 118
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQVT WM+TGERQA RIRGLYLKTILRQDVAFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 119 FLQVTSWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGE 178
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL+ATF+GGF+IAF++GWLLT+VMLS++PLLA+SG MA++I +M+SRGQ AYA
Sbjct: 179 KVGKFLQLIATFIGGFVIAFVRGWLLTVVMLSTLPLLALSGATMAVIIGRMASRGQTAYA 238
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA VVEQTIGSIRTVASFTGEKQA+S+Y KFLV AYKSGV EG AG GLG VML++FC
Sbjct: 239 KAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGSTAGAGLGTVMLVIFC 298
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
YAL+VW+G K+I+E+GYNGG V+NV++AVLT SMSLG+ASP +SAF AGQAAA+KMF+T
Sbjct: 299 GYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFQT 358
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYD GKIL+DI+G+IELRDV FSYPARP E IF+GFS+ I SGTTAALVGQ
Sbjct: 359 IERKPEIDAYDPNGKILEDIQGEIELRDVDFSYPARPEELIFNGFSLHIPSGTTAALVGQ 418
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISL+ERFYDPQAGEVLIDGINLKEFQL+WIR KIGLVSQEPVLF SIKDNI
Sbjct: 419 SGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNI 478
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGK+ AT EEIR A+ELANAAKFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILK+
Sbjct: 479 AYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKN 538
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTT+IVAHRLSTVRNAD+IAVIHRGK+VE
Sbjct: 539 PRILLLDEATSALDAESERIVQEALDRIMVNRTTIIVAHRLSTVRNADVIAVIHRGKMVE 598
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KGTH +L++DPEGAYSQLIRLQE NKE+E D SE+S+ES R SS + SL+RSISR
Sbjct: 599 KGTHIELLKDPEGAYSQLIRLQEVNKETEGNADQHNNSELSVESFRQSSQKRSLQRSISR 658
Query: 661 GSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPV 720
GSS+GNSSRHS SVSFGLP+G + +P S +E APEVP RLA LNKPEIPV
Sbjct: 659 GSSLGNSSRHSFSVSFGLPTG----VNVADPEHESSQPKEEAPEVPLSRLASLNKPEIPV 714
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
++ G++AA+ANGVI PI+G+LISSVI+TF++P E+KKDS+FWAL+++ LG SFL+ PA
Sbjct: 715 LVIGSVAAIANGVIFPIFGVLISSVIKTFYEPFDEMKKDSKFWALMFMILGLASFLIIPA 774
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
+ YFFAVAG KLIQRIR MCFEKV++MEVSWFDEPE+SSGAIGARLSADAASVRALVGDA
Sbjct: 775 RGYFFAVAGCKLIQRIRQMCFEKVVNMEVSWFDEPENSSGAIGARLSADAASVRALVGDA 834
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEE 900
L +VQN +T AGLIIAF ASWQLALIILV++PLIGV+GY QMKFMKGFSADAKM YEE
Sbjct: 835 LGLLVQNFATVLAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEE 894
Query: 901 ASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960
ASQVANDAVGSIRTVASFCAE+KVM+LYK KCE PMKTGIRQG++SG GFG SFFLLF
Sbjct: 895 ASQVANDAVGSIRTVASFCAEDKVMELYKNKCEGPMKTGIRQGLISGSGFGVSFFLLFCV 954
Query: 961 YAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAII 1020
YA SFYAGARLV+ GKATFSDVF+VFF+LTM AIG+SQSSSF+ DS+KAKSA ASIF II
Sbjct: 955 YATSFYAGARLVDAGKATFSDVFRVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGII 1014
Query: 1021 DRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGES 1080
D++SKIDP DESG+ L+ VKGEIEL HVSFKYPSRPD+Q+FRDL+L I +GKTVALVGES
Sbjct: 1015 DKKSKIDPGDESGSTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLTIHSGKTVALVGES 1074
Query: 1081 GSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140
GSGKSTV++LLQRFY+PD+G ITLDG+EI++LQLKWLRQQMGLVSQEPVLFN+TIRANIA
Sbjct: 1075 GSGKSTVIALLQRFYNPDSGQITLDGIEIRELQLKWLRQQMGLVSQEPVLFNETIRANIA 1134
Query: 1141 YGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
YGKGGDATEAEI AA+EMANAHKFI LQQ
Sbjct: 1135 YGKGGDATEAEIIAAAEMANAHKFISGLQQ 1164
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533485|ref|XP_003535294.1| PREDICTED: ABC transporter B family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1801 bits (4666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 904/1171 (77%), Positives = 1032/1171 (88%), Gaps = 13/1171 (1%)
Query: 2 NGESNS-NEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
NGE ++AS S+++ E S N EK KQ EK E+VPF+KLF FADS D L
Sbjct: 5 NGEERKHDDASTSENRAET------STNGEKEEKSKQQEKPETVPFHKLFAFADSTDILL 58
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
M +G+IGAIGNGL LPLMTLLFG +I++FG NQ N+ V++VSKV++KFVYL +GSG+A+
Sbjct: 59 MAVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQRNTNVVEEVSKVSLKFVYLAVGSGLAA 118
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQVT WM+TGERQA RIRGLYLKTILRQDVAFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 119 FLQVTSWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGE 178
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL+ATF+GGF+IAFIKGWLLT+VMLS++PLLA+SG MA++I +M+SRGQ AYA
Sbjct: 179 KVGKFLQLIATFIGGFVIAFIKGWLLTVVMLSTLPLLALSGATMAVIIGRMASRGQTAYA 238
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA VVEQTIGSIRTVASFTGEKQA+S+Y KFLV AYKSGV EG AG GLG VML++FC
Sbjct: 239 KAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGFIAGAGLGTVMLVIFC 298
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
YAL+VW+G K+I+E+GYNGG V+NV++AVLT SMSLGEASP LSAF AGQAAA+KMF+T
Sbjct: 299 GYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGEASPSLSAFAAGQAAAYKMFQT 358
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYD GKIL+DI+G+IELRDVYFSYPARP E IF+GFS+ I SGTTAALVGQ
Sbjct: 359 IERKPEIDAYDPNGKILEDIQGEIELRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQ 418
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISL+ERFYDPQAGEVLIDGINLKEFQL+WIR KIGLVSQEPVLF SIKDNI
Sbjct: 419 SGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNI 478
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGK+ AT EEIR A+ELANAAKFIDKLPQG+DT+V EHGTQLSGGQKQRIAIARAILK+
Sbjct: 479 AYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVCEHGTQLSGGQKQRIAIARAILKN 538
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE+VVQEALDRIMVNRTT++VAHRLSTVRNADMIAVIHRGK+VE
Sbjct: 539 PRILLLDEATSALDAESERVVQEALDRIMVNRTTIVVAHRLSTVRNADMIAVIHRGKMVE 598
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KGTHS+L++DPEGAYSQLIRLQE +KE+E D K+E+S+ES R SS + SL+RSISR
Sbjct: 599 KGTHSELLKDPEGAYSQLIRLQEVSKETEGNADQHDKTELSVESFRQSSQKRSLQRSISR 658
Query: 661 GSSIGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIP 719
GSS+GNSSRHS SVSFGLP+G AD L SQP EE APEVP RLA LNKPEIP
Sbjct: 659 GSSLGNSSRHSFSVSFGLPTGVNVADPELEN----SQPKEE-APEVPLSRLASLNKPEIP 713
Query: 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSP 779
VI+ G++AA+ANGVI PI+G+LISSVI+TF++P E+KKDS FWAL+++ LG SFL+ P
Sbjct: 714 VIVIGSVAAIANGVIFPIFGVLISSVIKTFYEPFDEMKKDSEFWALMFMILGLASFLIIP 773
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
A+ YFF+VAG KLIQRIR MCFEKV++MEVSWFDEPE+SSGAIGARLSADAASVRALVGD
Sbjct: 774 ARGYFFSVAGCKLIQRIRLMCFEKVVNMEVSWFDEPENSSGAIGARLSADAASVRALVGD 833
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
AL +VQN +TA AGLIIAF ASWQLALIILV++PLIGV+GY QMKFMKGFSADAKM YE
Sbjct: 834 ALGLLVQNFATALAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYE 893
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
EASQVANDAVGSIRTVASFCAE+KVM+LYKKKCE PMKTGIRQG++SG GFG SFFLLF
Sbjct: 894 EASQVANDAVGSIRTVASFCAEDKVMELYKKKCEGPMKTGIRQGLISGSGFGVSFFLLFC 953
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAI 1019
YA SFYAGARL++ GK TFSDVF+VFF+LTM AIG+SQSSSF+ DS+KAKSA ASIF I
Sbjct: 954 VYATSFYAGARLMDSGKTTFSDVFQVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGI 1013
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
ID++SKID SD SG+ L+ +KGEIEL HVSFKYPSRPD+Q+FRDL L I +GKTVALVGE
Sbjct: 1014 IDKKSKIDSSDASGSTLDSIKGEIELRHVSFKYPSRPDMQIFRDLRLTIHSGKTVALVGE 1073
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKSTV++LLQRFYDPD+G ITLDGVEI++LQLKWLRQQMGLVSQEPVLFN+++RANI
Sbjct: 1074 SGSGKSTVIALLQRFYDPDSGQITLDGVEIRELQLKWLRQQMGLVSQEPVLFNESLRANI 1133
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
AYGKGGDATEAEI AA+E+ANAHKFI LQQ
Sbjct: 1134 AYGKGGDATEAEIIAAAELANAHKFISGLQQ 1164
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548261|ref|XP_002515187.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545667|gb|EEF47171.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1788 bits (4630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 886/1173 (75%), Positives = 1023/1173 (87%), Gaps = 31/1173 (2%)
Query: 1 MNGESNSNEA-SASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTA 59
+NG ++++EA ++ +EE K SS +G D+EK K EKT SVPF+KLF+FADS D
Sbjct: 7 LNGNTSTHEAGTSKSHEEEKEKKSSTNGLPQDTEKSKGDEKTNSVPFHKLFSFADSKDVI 66
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
LMIIG+I AIGNGL LPLMT++ GD+I+ FG NQN + V VSKV+++FVYL IG+ A
Sbjct: 67 LMIIGTIAAIGNGLALPLMTIVLGDIIDAFGQNQNQ-DVVKVVSKVSLRFVYLAIGAAAA 125
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
SFL C LR V NTGEV+GRMSGDTVLIQDAMG
Sbjct: 126 SFL--PCG-------------------LRNSVCC----XNTGEVIGRMSGDTVLIQDAMG 160
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
EKVGKF+QL++TFLGGF+IAF+KGWLLT VMLSSIPLL ++GGVM+I ISKM+SRGQ AY
Sbjct: 161 EKVGKFIQLVSTFLGGFVIAFVKGWLLTFVMLSSIPLLVIAGGVMSITISKMASRGQTAY 220
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
AKAA+VVEQTIGSIRTVASFTGEKQA+SNYKKFLVTAY SGV EG+A G+GLG++ML+VF
Sbjct: 221 AKAATVVEQTIGSIRTVASFTGEKQAISNYKKFLVTAYNSGVHEGIATGVGLGVLMLVVF 280
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
CSY+L++W+GGK+ILE+GY GGQV+NV++AVL+GSMSLG+ASPC+SAF AGQAAA+KMFE
Sbjct: 281 CSYSLAIWFGGKMILEKGYTGGQVLNVIIAVLSGSMSLGQASPCMSAFAAGQAAAYKMFE 340
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
TI+R PEIDAYDT+GKIL+DIRGDIELRDVYFSYPARP EQIFSGFS+SI SGTT ALVG
Sbjct: 341 TISRMPEIDAYDTRGKILEDIRGDIELRDVYFSYPARPEEQIFSGFSLSIPSGTTTALVG 400
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
QSGSGKSTVISLIERFYDPQAGEV IDGINLKEFQL+WIR+KIGLVSQEPVLFT SI+DN
Sbjct: 401 QSGSGKSTVISLIERFYDPQAGEVRIDGINLKEFQLKWIREKIGLVSQEPVLFTASIRDN 460
Query: 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
IAYGKD ATTEEIR A ELANAAKFIDKLPQG+DT+ GEHGTQLSGGQKQRIAIARAILK
Sbjct: 461 IAYGKDGATTEEIRSAAELANAAKFIDKLPQGLDTMAGEHGTQLSGGQKQRIAIARAILK 520
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599
DPRILLLDEATSALDAESE+VVQEALDRIMVNRTTVIVAHRLST+RNAD+IAVIHRGK+V
Sbjct: 521 DPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLSTIRNADVIAVIHRGKMV 580
Query: 600 EKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSIS 659
EKG+HS+L+ DP+GAYSQLIRLQE NK+SEQ + ++S++S ES R SS R+SLRRSIS
Sbjct: 581 EKGSHSELLMDPDGAYSQLIRLQEVNKDSEQKPEDHKRSDLSSESFRQSSQRISLRRSIS 640
Query: 660 RGSS-IGNSSRHSISVSFGLPSGQFA-DTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE 717
RGSS +GNSSRHS SVSFGLP+G A D EP P+ E PEVP RRLAYLNKPE
Sbjct: 641 RGSSGVGNSSRHSFSVSFGLPTGINATDNPQEEPT--DSPSPENTPEVPIRRLAYLNKPE 698
Query: 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLL 777
IPV++ G IAA ANGVI PIYG+L+S VI++F++PPHEL+KD+ FWALI++ LG SF++
Sbjct: 699 IPVLIFGAIAACANGVIFPIYGILLSRVIKSFYEPPHELRKDTNFWALIFMTLGLASFVV 758
Query: 778 SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALV 837
P Q YFF VAG++LIQRIR++CFEKV+HMEV WFDEPEHSSGAIGARLSADAA+VRALV
Sbjct: 759 IPLQFYFFGVAGSRLIQRIRTICFEKVVHMEVGWFDEPEHSSGAIGARLSADAATVRALV 818
Query: 838 GDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMK 897
GD+LA++VQN+++A AGL+IAFTASWQLA IIL ++PLIGV+GY Q+KFM+GFSADAKM
Sbjct: 819 GDSLAQMVQNLASAVAGLVIAFTASWQLAFIILALIPLIGVTGYVQVKFMQGFSADAKMM 878
Query: 898 YEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957
YEEASQVANDAVGSIRTVASFCAEEKVMQ+YKKKCE PMKTGIRQG++SG GFGASFFLL
Sbjct: 879 YEEASQVANDAVGSIRTVASFCAEEKVMQMYKKKCEGPMKTGIRQGVISGMGFGASFFLL 938
Query: 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017
F+ YA SFYAGA+LV+ GK +FSDVF+VFF+LTM A+GISQSSS + DS+KA+SA ASIF
Sbjct: 939 FSVYATSFYAGAQLVKHGKTSFSDVFQVFFALTMAAMGISQSSSLAPDSSKARSAVASIF 998
Query: 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALV 1077
+IIDR+SKIDPSDESG +E+V+GEIEL VSF+YPSRPD+Q+FRDLNL I +GKTVALV
Sbjct: 999 SIIDRQSKIDPSDESGMTIENVRGEIELRRVSFRYPSRPDIQIFRDLNLAIHSGKTVALV 1058
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137
GESGSGKSTV+SLLQRFYDPD+GHITLDGVEIQ+LQLKWLRQQMGLVSQEPVLFNDTIRA
Sbjct: 1059 GESGSGKSTVISLLQRFYDPDSGHITLDGVEIQRLQLKWLRQQMGLVSQEPVLFNDTIRA 1118
Query: 1138 NIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
NIAYGK GDATEAE AASE+ANAHKFI SLQQ
Sbjct: 1119 NIAYGKDGDATEAETLAASELANAHKFISSLQQ 1151
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357442065|ref|XP_003591310.1| ABC transporter B family member [Medicago truncatula] gi|355480358|gb|AES61561.1| ABC transporter B family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1787 bits (4628), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 887/1168 (75%), Positives = 1033/1168 (88%), Gaps = 8/1168 (0%)
Query: 4 ESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMII 63
E+N +EA+ S E+ ++S + + EK K EK E+VPF+KLFTFADS D LMI+
Sbjct: 11 ENNHDEATTS---EKNSTETSSTNVVTNGEKDKTKEKQETVPFHKLFTFADSTDILLMIV 67
Query: 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNS-ETVDKVSKVAVKFVYLGIGSGIASFL 122
G+IGAIGNGL LPLMTLLFG +I++FG NQ+N+ + V++VSKV++KFVYL +GSG+A+FL
Sbjct: 68 GTIGAIGNGLGLPLMTLLFGQMIDSFGSNQSNTTDVVEQVSKVSLKFVYLAVGSGVAAFL 127
Query: 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKV 182
QV+CWM+TGERQA RIRGLYLKTILRQDV FFD ETNTGEVVGRMSGDTVLIQDAMGEKV
Sbjct: 128 QVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKV 187
Query: 183 GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKA 242
GKFLQL+ATF+GGF+IAF KGWLLT+VM+S++P L +SG MA++I +M+S+GQ AYAKA
Sbjct: 188 GKFLQLIATFIGGFVIAFTKGWLLTVVMMSTLPFLVVSGAAMAVIIGRMASKGQTAYAKA 247
Query: 243 ASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302
A VVEQTIGSIRTVASFTGEKQA+S+Y KFLV AYKSGV EG AG GLG VM ++FC Y
Sbjct: 248 AHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVFEGTIAGAGLGTVMFVIFCGY 307
Query: 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362
AL+VW+G K+I+E+GYNGG V+NV++AVLT SMSLG+ASP +SAF AGQAAA+KMFETI
Sbjct: 308 ALAVWFGAKMIIEKGYNGGTVINVIIAVLTASMSLGQASPSMSAFAAGQAAAYKMFETIK 367
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
R+PEIDAYD GKIL+DI+G+IEL++VYFSYPARP E IF+GFS+ ISSGTTAALVGQSG
Sbjct: 368 RRPEIDAYDPNGKILEDIQGEIELKEVYFSYPARPEELIFNGFSLHISSGTTAALVGQSG 427
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
SGKSTVISL+ERFYDPQAGEVLIDGIN+KE QL+WIR KIGLVSQEPVLF SIKDNIAY
Sbjct: 428 SGKSTVISLVERFYDPQAGEVLIDGINMKELQLRWIRGKIGLVSQEPVLFASSIKDNIAY 487
Query: 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
GKD AT EEIR A+ELANAAKFIDKLPQG+DT+VG+HGTQLSGGQKQRIAIARAILK+PR
Sbjct: 488 GKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGDHGTQLSGGQKQRIAIARAILKNPR 547
Query: 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
ILLLDEATSALDAESE+VVQEALDRIMVNRTTV+VAHRLSTVRNADMIAVIHRGK+VEKG
Sbjct: 548 ILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKG 607
Query: 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGS 662
THS+L++DPEGAYSQLIRLQE NKESE+T D K E+S ES R SS R SL+RSISRGS
Sbjct: 608 THSELLKDPEGAYSQLIRLQEVNKESEETTDHHGKRELSAESFRQSSQRKSLQRSISRGS 667
Query: 663 SIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVIL 722
SIGNSSRHS SVSFGLP+G + +P PT+E EVP RRLA LNKPEIPV+L
Sbjct: 668 SIGNSSRHSFSVSFGLPTG----VNVADPDLEKVPTKEKEQEVPLRRLASLNKPEIPVLL 723
Query: 723 AGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQS 782
G++AA+ANGVILPI+G+LISSVI+TF++P E+KKDS+FWA++++ LG S ++ PA+
Sbjct: 724 IGSLAAIANGVILPIFGVLISSVIKTFYEPFDEMKKDSKFWAIMFMLLGLASLVVIPARG 783
Query: 783 YFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALA 842
YFF+VAG KLIQRIR +CFEKV++MEV WFDEPE+SSGA+GARLSADAASVRALVGDAL
Sbjct: 784 YFFSVAGCKLIQRIRLLCFEKVVNMEVGWFDEPENSSGAVGARLSADAASVRALVGDALG 843
Query: 843 RIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902
+VQN+++A AGLIIAF ASWQLALIILV++PLIG++GY QMKFMKGFS DAKM YEEAS
Sbjct: 844 LLVQNLASALAGLIIAFIASWQLALIILVLIPLIGLNGYVQMKFMKGFSGDAKMMYEEAS 903
Query: 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYA 962
QVANDAVGSIRTVASFCAE+KVM+LY+KKCE PMKTGIRQG++SG GFG SFFLLF+ YA
Sbjct: 904 QVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGIISGSGFGVSFFLLFSVYA 963
Query: 963 ASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDR 1022
SFYAGARLV+ G TFSDVF+VFF+LTM AIGISQSSSF+ DS+KAKSA ASIF +ID+
Sbjct: 964 TSFYAGARLVKAGNTTFSDVFRVFFALTMAAIGISQSSSFAPDSSKAKSATASIFGMIDK 1023
Query: 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082
+SKIDPS+ESGT L+ +KGEIEL H+SFKYPSRPD+Q+FRDLNL I +GKTVALVGESGS
Sbjct: 1024 KSKIDPSEESGTTLDSIKGEIELRHISFKYPSRPDIQIFRDLNLTIHSGKTVALVGESGS 1083
Query: 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
GKSTV++LLQRFYDPD+G ITLDG+EI++LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG
Sbjct: 1084 GKSTVIALLQRFYDPDSGEITLDGIEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1143
Query: 1143 KGGDATEAEIQAASEMANAHKFICSLQQ 1170
KGG ATEAEI AA+E+ANAH+FI LQQ
Sbjct: 1144 KGGIATEAEIIAAAELANAHRFISGLQQ 1171
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548259|ref|XP_002515186.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545666|gb|EEF47170.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1786 bits (4626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 878/1172 (74%), Positives = 1037/1172 (88%), Gaps = 6/1172 (0%)
Query: 1 MNGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
++ + +++E S SK EE K + +G+ + EK EKT SVPF+KLF+FADS D L
Sbjct: 7 VHSDISTHETSTSKGLEEKDKSARANGHPQEMEKSNGEEKTNSVPFHKLFSFADSVDIVL 66
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
MIIG+IGA+GNGL +PLMT+ GD I+ FG+NQNN + VD VSKV++KFVYLGIGS +AS
Sbjct: 67 MIIGTIGALGNGLSMPLMTIFLGDTIDAFGNNQNNQDVVDIVSKVSLKFVYLGIGSSVAS 126
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQV CWM+TGERQA RIRGLYLKTILRQD+AFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 127 FLQVVCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGE 186
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL++TF+GGFLIAF+KGWLLTLVMLSS+PLL ++G M+IMI++ +S GQ AYA
Sbjct: 187 KVGKFLQLLSTFIGGFLIAFVKGWLLTLVMLSSLPLLVLAGAAMSIMIARTASHGQNAYA 246
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA+VVEQTIGSIRTVASFTGEKQA+ NY+K+LV AY SG EGL G+GLG+ + I+F
Sbjct: 247 KAATVVEQTIGSIRTVASFTGEKQAIRNYEKYLVAAYHSGAHEGLITGLGLGLFVFILFS 306
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
SYAL++WYGGK+ILE+GY GG+V+NV++ VLTGS SLG+ASPC+SAF AGQAAA+KMFET
Sbjct: 307 SYALAIWYGGKMILEKGYTGGEVINVILVVLTGSTSLGQASPCMSAFAAGQAAAYKMFET 366
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYDT GK+ DD+ G IEL++VYFSYPARP+EQIFSGFS+SI SG TAALVGQ
Sbjct: 367 IGRKPEIDAYDTSGKVSDDVHGSIELKEVYFSYPARPDEQIFSGFSLSIPSGMTAALVGQ 426
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISL+ERFYDPQ+GEVLIDGINLKE+QL+WIR KIGLVSQEPVLFT SI+DNI
Sbjct: 427 SGSGKSTVISLVERFYDPQSGEVLIDGINLKEYQLKWIRGKIGLVSQEPVLFTSSIRDNI 486
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGKD+ATTEEIR A ELANAAKFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILKD
Sbjct: 487 AYGKDEATTEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 546
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRL+T+RNADMIAVIHRGKIVE
Sbjct: 547 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLTTIRNADMIAVIHRGKIVE 606
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
KG+HS+L+ DP+GAY+QLIRLQE N++SE+ +D +++SEIS+ESL SS R SL+RSISR
Sbjct: 607 KGSHSELLADPDGAYAQLIRLQEVNEDSEEAVDERKRSEISLESL--SSQRNSLQRSISR 664
Query: 661 GSS-IGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEI 718
GSS GNS RHS+SV GL +G ++ +L EP Q + PEVP RRLAYLNKPEI
Sbjct: 665 GSSGAGNSHRHSLSVPSGLRTGLNVSENSLAEPEVSLQKKQ--TPEVPIRRLAYLNKPEI 722
Query: 719 PVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLS 778
P ++AG+I A+ +GVI P++G+LIS VIE FFKPPHEL+KDS+FWA+I++ + SFL
Sbjct: 723 PELIAGSIGAIIHGVIFPLFGILISRVIEAFFKPPHELRKDSKFWAIIFVIVAVVSFLAC 782
Query: 779 PAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVG 838
AQ YFFAVAG+KLIQRIRSMCFEKV+HMEV WFD PEHSSGAIGARLSADAASVR+LVG
Sbjct: 783 NAQLYFFAVAGSKLIQRIRSMCFEKVVHMEVGWFDVPEHSSGAIGARLSADAASVRSLVG 842
Query: 839 DALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKY 898
D+LA++VQNI++A AGL+IAFTASWQLA IILV++PL G++ Y Q++F+KGFSADAKM Y
Sbjct: 843 DSLAQMVQNIASAVAGLVIAFTASWQLAFIILVIVPLTGLNAYVQLEFLKGFSADAKMMY 902
Query: 899 EEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLF 958
EEASQVANDAVGSIRTVASFCAEEKVMQLY+KKCE P+KTGIRQG+VSG GFG SFFLLF
Sbjct: 903 EEASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPLKTGIRQGLVSGIGFGVSFFLLF 962
Query: 959 AFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFA 1018
+ YA SFYAGA+LV+ GKATF+DVF+VFF+LT+ A+GISQSSSF+ DS+KAK+A ASIF+
Sbjct: 963 SVYATSFYAGAQLVKHGKATFTDVFQVFFALTVAAMGISQSSSFAPDSSKAKTAVASIFS 1022
Query: 1019 IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVG 1078
I+DR+SKIDPSDESG LE+V+G+IE HV+F+YPSRPD+Q+F+DL+L I +GKTVALVG
Sbjct: 1023 ILDRKSKIDPSDESGMTLENVRGDIEFQHVTFRYPSRPDIQIFQDLSLSIHSGKTVALVG 1082
Query: 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138
ESGSGKST +SLLQRFYDPD+GHITLDGVEIQ+LQLKWLRQQMGLVSQEPVLFN+TIRAN
Sbjct: 1083 ESGSGKSTAISLLQRFYDPDSGHITLDGVEIQRLQLKWLRQQMGLVSQEPVLFNETIRAN 1142
Query: 1139 IAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
IAYGK G+A+EAEI AASE+AN+H+FI SLQQ
Sbjct: 1143 IAYGKDGNASEAEILAASELANSHEFISSLQQ 1174
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548257|ref|XP_002515185.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223545665|gb|EEF47169.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1781 bits (4613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/1171 (74%), Positives = 1028/1171 (87%), Gaps = 4/1171 (0%)
Query: 1 MNGESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTAL 60
++ +++++E S SK EE K + +G+ + EK K EKT SVPF+KLF+FADS D L
Sbjct: 7 IHSDTSTHETSTSKGLEEKDKSARANGHPQEIEKSKGEEKTNSVPFHKLFSFADSVDIVL 66
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIAS 120
MIIG+IGA+GNGL +PLMT+ GD I+ FG+NQNN + VD VSKV++KFVYLGIGS +AS
Sbjct: 67 MIIGTIGALGNGLSMPLMTIFLGDTIDAFGNNQNNQDVVDVVSKVSLKFVYLGIGSSVAS 126
Query: 121 FLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE 180
FLQV CWM+TGERQA RIRGLYLKTILRQD+AFFD ETNTGEV+GRMSGDTVLIQDAMGE
Sbjct: 127 FLQVVCWMVTGERQAARIRGLYLKTILRQDIAFFDKETNTGEVIGRMSGDTVLIQDAMGE 186
Query: 181 KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYA 240
KVGKFLQL++TFLGGF+IAF+KGWLLTLVMLSS+PLL ++G M+IMI+K++SRGQ AYA
Sbjct: 187 KVGKFLQLVSTFLGGFVIAFVKGWLLTLVMLSSLPLLVLAGAAMSIMIAKIASRGQNAYA 246
Query: 241 KAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
KAA+VVEQTIGSIRTVASFTGEKQA+ NY+KFL+ AY SG EGL G+GLG+ MLI+FC
Sbjct: 247 KAATVVEQTIGSIRTVASFTGEKQAIRNYEKFLLAAYHSGAHEGLITGLGLGLFMLILFC 306
Query: 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360
SYAL++W+GGK+ILE+GY GG+V+NV++AVLTGS SLG+ASP ++AF AGQAAA+KMFET
Sbjct: 307 SYALAIWFGGKMILEKGYTGGEVINVIIAVLTGSTSLGQASPSMTAFAAGQAAAYKMFET 366
Query: 361 INRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQ 420
I RKPEIDAYD GKI DDI G IELR+VYFSYPARP+EQIFSGFS+SI +G TAALVGQ
Sbjct: 367 IGRKPEIDAYDMSGKISDDIHGSIELREVYFSYPARPDEQIFSGFSLSIPNGMTAALVGQ 426
Query: 421 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480
SGSGKSTVISLIERFYDPQ GEVLIDGINLKE+QL+WIR+KIGLVSQEPVLFT SI+DNI
Sbjct: 427 SGSGKSTVISLIERFYDPQGGEVLIDGINLKEYQLKWIREKIGLVSQEPVLFTSSIRDNI 486
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
AYGKD ATTEEIR A ELANAAKFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILKD
Sbjct: 487 AYGKDGATTEEIRAAAELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 546
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
PRILLLDEATSALDAESE++VQEALDRIMVNRTTVIVAHRL+T+RNAD+IAVIHRG IVE
Sbjct: 547 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLTTIRNADVIAVIHRGNIVE 606
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISR 660
+G+HS+L+ P+GAYSQLIRLQE N++SE+ +D ++ EIS+ESL S R
Sbjct: 607 QGSHSELLAYPDGAYSQLIRLQEVNEDSEEAVDEHKRPEISLESLS-SQRNSLRRSISRA 665
Query: 661 GSSIGNSSRHSISVSFGLPSG-QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIP 719
S +GNS RHS+SVSFGL +G ++ +L EP P PEVP RRLAYLNKPEIP
Sbjct: 666 SSRLGNSHRHSLSVSFGLTTGLNVSENSLAEP--EVSPQNNQTPEVPIRRLAYLNKPEIP 723
Query: 720 VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSP 779
V++AG+IAA+ NGV+ P++G+LIS VIE+FFKPPHEL+KDS+FWA+I++ + S L
Sbjct: 724 VLIAGSIAAIINGVVFPLFGILISRVIESFFKPPHELRKDSKFWAIIFVIVAVVSSLACI 783
Query: 780 AQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839
AQ YFFAVAG+KLIQRIRSMCF+KV+HMEV WFD PEHSSGAIGARLSADAA+VR+LVGD
Sbjct: 784 AQLYFFAVAGSKLIQRIRSMCFDKVVHMEVGWFDVPEHSSGAIGARLSADAAAVRSLVGD 843
Query: 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE 899
+LA++VQNI++A AGLIIAFT+SWQLA IILV++PL G++ Y Q+KF++GFSADAKM YE
Sbjct: 844 SLAQMVQNIASAVAGLIIAFTSSWQLAFIILVIVPLTGLNAYVQLKFLRGFSADAKMMYE 903
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
EASQVANDAVGSIRTVASFCAEEKVMQLY+KKCE P+KTGIRQG++SG GFG SFFLLF+
Sbjct: 904 EASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPLKTGIRQGLISGIGFGVSFFLLFS 963
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAI 1019
YA SFYAGA+LV+ GK TFSDVF+VFF+LTM +GISQSSSF+ DS+KAKSA AS+F+I
Sbjct: 964 VYATSFYAGAQLVKHGKTTFSDVFQVFFALTMATMGISQSSSFAPDSSKAKSAVASVFSI 1023
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
+DR+SKIDPSDESG LE+VKGEIE HVSF+YPSRPD+Q+F+DL+L I +GKTVALVGE
Sbjct: 1024 LDRKSKIDPSDESGMTLENVKGEIEFRHVSFRYPSRPDIQIFQDLSLSIHSGKTVALVGE 1083
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SGSGKST +SLLQRFYDPD+GHITLDGVEIQ+LQLKWLRQQMGLVSQEPVLFNDTIRANI
Sbjct: 1084 SGSGKSTAISLLQRFYDPDSGHITLDGVEIQRLQLKWLRQQMGLVSQEPVLFNDTIRANI 1143
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
AYGK G+A+EAEI AASE+AN+H+FI SLQQ
Sbjct: 1144 AYGKDGNASEAEILAASELANSHEFISSLQQ 1174
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1178 | ||||||
| TAIR|locus:2196145 | 1278 | ABCB11 "ATP-binding cassette B | 0.966 | 0.890 | 0.677 | 0.0 | |
| TAIR|locus:2041434 | 1286 | ABCB4 "ATP-binding cassette B4 | 0.962 | 0.881 | 0.683 | 0.0 | |
| TAIR|locus:2196135 | 1273 | ABCB12 "ATP-binding cassette B | 0.976 | 0.903 | 0.658 | 0.0 | |
| TAIR|locus:2141350 | 1229 | ABCB3 "ATP-binding cassette B3 | 0.502 | 0.481 | 0.721 | 0.0 | |
| TAIR|locus:2141365 | 1230 | ABCB5 "ATP-binding cassette B5 | 0.507 | 0.486 | 0.719 | 0.0 | |
| TAIR|locus:2151496 | 1248 | ABCB7 "ATP-binding cassette B7 | 0.515 | 0.486 | 0.617 | 0.0 | |
| TAIR|locus:2117656 | 1236 | ABCB9 "ATP-binding cassette B9 | 0.669 | 0.638 | 0.600 | 6.4e-256 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.497 | 0.468 | 0.488 | 1.6e-239 | |
| DICTYBASE|DDB_G0293438 | 1397 | abcB2 "ABC transporter B famil | 0.775 | 0.653 | 0.404 | 4.5e-233 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.945 | 0.884 | 0.406 | 1.2e-232 |
| TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3968 (1401.9 bits), Expect = 0., P = 0.
Identities = 780/1151 (67%), Positives = 921/1151 (80%)
Query: 23 SSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLF 82
S G E E+ K EK +VPFYKLF FADS+D LMI GSIGAIGNG+ LP MTLLF
Sbjct: 21 SPKEGEETKKEE-KSEEKANTVPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLF 79
Query: 83 GDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLY 142
GDLI++FG NQNN + VD VSKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR Y
Sbjct: 80 GDLIDSFGKNQNNKDIVDVVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTY 139
Query: 143 LKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202
LKTILRQD+ FFD ETNTGEVVGRMSGDTVLIQDAMGEKVGKF+QL++TF+GGF++AFIK
Sbjct: 140 LKTILRQDIGFFDVETNTGEVVGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIK 199
Query: 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE 262
GWLLTLVML+SIPLLAM+G MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTVASFTGE
Sbjct: 200 GWLLTLVMLTSIPLLAMAGAAMALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGE 259
Query: 263 KQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQ 322
KQA+++YKKF+ +AYKS +Q+G + G+GLG++ + F SYAL++W+GGK+ILE+GY GG
Sbjct: 260 KQAINSYKKFITSAYKSSIQQGFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGA 319
Query: 323 VVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382
V+NV++ V+ GSMSLG+ SPC++AF AGQAAA+KMFETI RKP IDAYD GK+L+DIRG
Sbjct: 320 VINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRG 379
Query: 383 DIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
DIEL+DV+FSYPARP+E+ TAALVG+SGSGKSTVISLIERFYDP++G
Sbjct: 380 DIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGA 439
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
VLIDG+NLKEFQL+WIR KIGLVSQEPVLF+ SI +NIAYGK++AT EEI+ ATELANAA
Sbjct: 440 VLIDGVNLKEFQLKWIRSKIGLVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAA 499
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
KFIDKLPQG+DT+VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQ
Sbjct: 500 KFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQ 559
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
EALDR+MVNRTTVIVAHRLSTVRNADMIAVIHRGK+VEKG+HS+L++D EGAYSQLIRLQ
Sbjct: 560 EALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQ 619
Query: 623 EANKESEQTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XFGLPSG 681
E NK+ + SE+ GL G
Sbjct: 620 EINKDV-------KTSELSSGSSFRNSNLKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLG 672
Query: 682 QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLL 741
+ A + G + ++E P+V R+A LNKPEIPV+L GT+AA NG I P++G+L
Sbjct: 673 SHSQRAGQDETGTA--SQEPLPKVSLTRIAALNKPEIPVLLLGTVAAAINGAIFPLFGIL 730
Query: 742 ISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801
IS VIE FFKP HELK+DSRFWA+I++ALG S ++SP Q Y FAVAG KLI+RIRSMCF
Sbjct: 731 ISRVIEAFFKPAHELKRDSRFWAIIFVALGVTSLIVSPTQMYLFAVAGGKLIRRIRSMCF 790
Query: 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTA 861
EK +HMEV+WFDEP++SSG +GARLSADA +RALVGDAL+ VQN+++AA+GLIIAFTA
Sbjct: 791 EKAVHMEVAWFDEPQNSSGTMGARLSADATLIRALVGDALSLAVQNVASAASGLIIAFTA 850
Query: 862 SWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921
SW+LALIILVMLPLIG++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRTVASFCAE
Sbjct: 851 SWELALIILVMLPLIGINGFVQVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAE 910
Query: 922 EKVMQLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSD 981
EKVMQ+YKK+CE P+K GI+QG +S RLVEDGK TF++
Sbjct: 911 EKVMQMYKKQCEGPIKDGIKQGFISGLGFGFSFFILFCVYATSFYAGARLVEDGKTTFNN 970
Query: 982 VFKVFFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKG 1041
VF+VFF+LTM R+SKID SDE+GT+LE+VKG
Sbjct: 971 VFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKG 1030
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+IEL H+SF YP+RPD+Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRFYDPD+GH
Sbjct: 1031 DIELRHLSFTYPARPDIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGH 1090
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEIQAASEMA 1159
ITLDGVE++KLQLKWLRQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI AA+E+A
Sbjct: 1091 ITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELA 1150
Query: 1160 NAHKFICSLQQ 1170
NAHKFI S+QQ
Sbjct: 1151 NAHKFISSIQQ 1161
|
|
| TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3965 (1400.8 bits), Expect = 0., P = 0.
Identities = 778/1139 (68%), Positives = 917/1139 (80%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
+K ++ EKT++VPFYKLF FADS D LMI+G++G+IGNGL PLMTLLFGDLI+ FG+N
Sbjct: 35 KKDEEHEKTKTVPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGEN 94
Query: 93 QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVA 152
Q N T DKVSKVA+KFV+LGIG+ A+FLQ++ WMI+GERQA RIR LYLKTILRQD+A
Sbjct: 95 QTN--TTDKVSKVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIA 152
Query: 153 FFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS 212
FFD +TNTGEVVGRMSGDTVLIQDAMGEKVGK +QL+ATF+GGF+IAF++GWLLTLVMLS
Sbjct: 153 FFDIDTNTGEVVGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLS 212
Query: 213 SIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF 272
SIPLL M+G ++AI+I+K +SRGQ AYAKAA+VVEQTIGSIRTVASFTGEKQA+SNY K
Sbjct: 213 SIPLLVMAGALLAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKH 272
Query: 273 LVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332
LVTAYK+GV EG + G+GLG + L+VFCSYAL+VWYGGKLIL++GY GGQV+N+++AVLT
Sbjct: 273 LVTAYKAGVIEGGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLT 332
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
GSMSLG+ SPCLSAF AGQAAA+KMFETI R+P ID+Y T GK+LDDI+GDIEL+DVYF+
Sbjct: 333 GSMSLGQTSPCLSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFT 392
Query: 393 YPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YPARP+EQ TT ALVGQSGSGKSTV+SLIERFYDPQAG+VLIDGINLKE
Sbjct: 393 YPARPDEQIFRGFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKE 452
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
FQL+WIR KIGLVSQEPVLFT SIKDNIAYGK+DATTEEI+ A ELANA+KF+DKLPQG+
Sbjct: 453 FQLKWIRSKIGLVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGL 512
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
DT+VGEHGTQLSGGQKQRIA+ARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNR
Sbjct: 513 DTMVGEHGTQLSGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNR 572
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTI 632
TTV+VAHRLSTVRNADMIAVIH+GKIVEKG+H++L++DPEGAYSQLIRLQE K E
Sbjct: 573 TTVVVAHRLSTVRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAA 632
Query: 633 DGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFADTALG-EP 691
+ Q+ S I FG P+G + E
Sbjct: 633 EEQKMSSIESFKQSSLRKSSLGRSLSKGGSSRGNSSRHSFNM-FGFPAGIDGNVVQDQEE 691
Query: 692 AGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFK 751
+QP E +V R+A LNKPEIPV++ G+I+A ANGVILPI+G+LISSVI+ FF+
Sbjct: 692 DDTTQPKTE-PKKVSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQ 750
Query: 752 PPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811
PP +LK+D+ FWA+I++ LG S + PAQ++FFA+AG KL+QRIRSMCFEKV+HMEV W
Sbjct: 751 PPKKLKEDTSFWAIIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGW 810
Query: 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871
FDEPE+SSG IGARLSADAA++R LVGD+LA+ VQN+S+ AGLIIAF A WQLA ++L
Sbjct: 811 FDEPENSSGTIGARLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLA 870
Query: 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKK 931
MLPLI ++G+ MKFMKGFSADAK Y EASQVANDAVGSIRTVASFCAE+KVM +Y KK
Sbjct: 871 MLPLIALNGFLYMKFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKK 930
Query: 932 CEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSDVFKVFFSLTM 991
CE PMK GIRQG+VS RLV+DGK TF VF+VFF+LTM
Sbjct: 931 CEGPMKNGIRQGIVSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTM 990
Query: 992 TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKGEIELHHVSFK 1051
RESKIDPS ESG +L++VKG+IEL HVSFK
Sbjct: 991 AAMAISQSSSLSPDSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFK 1050
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
YP+RPDVQ+F+DL L IRAGKTVALVGESGSGKSTV++LLQRFYDPD+G ITLDGVEI+
Sbjct: 1051 YPARPDVQIFQDLCLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKS 1110
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
L+LKWLRQQ GLVSQEP+LFN+TIRANIAYGKGGDA+E+EI +++E++NAH FI LQQ
Sbjct: 1111 LRLKWLRQQTGLVSQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQ 1169
|
|
| TAIR|locus:2196135 ABCB12 "ATP-binding cassette B12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3868 (1366.7 bits), Expect = 0., P = 0.
Identities = 763/1158 (65%), Positives = 907/1158 (78%)
Query: 19 VGKDSSMSGNE--HDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLP 76
+ +D + G+ H+ K EK ++VP YKLF FADS D LMI GS+GAIGNG+CLP
Sbjct: 1 MNRDGAGEGDSVSHEHSTSKTDEKAKTVPLYKLFAFADSFDVFLMICGSLGAIGNGVCLP 60
Query: 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQAT 136
LMTLLFGDLI++FG NQNN + VD VSKV +KFVYLG+G A+FLQV CWMITGERQA
Sbjct: 61 LMTLLFGDLIDSFGKNQNNKDIVDVVSKVCLKFVYLGLGRLGAAFLQVACWMITGERQAA 120
Query: 137 RIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196
+IR YLKTILRQD+ FFD ETNTGEVVGRMSGDTV IQDAMGEKVGKF+QL++TF+GGF
Sbjct: 121 KIRSNYLKTILRQDIGFFDVETNTGEVVGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGF 180
Query: 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTV 256
+AF KGWLLTLVML+SIP LAM+G MA+++++ SSRGQ AYAKAA+VVEQTIGSIRTV
Sbjct: 181 ALAFAKGWLLTLVMLTSIPFLAMAGAAMALLVTRASSRGQAAYAKAATVVEQTIGSIRTV 240
Query: 257 ASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE 316
ASFTGEKQA+++YKK++ +AYKS +Q+G + G+GLG+++ + F SYAL++W+GGK+ILE+
Sbjct: 241 ASFTGEKQAINSYKKYITSAYKSSIQQGFSTGLGLGVMIYVFFSSYALAIWFGGKMILEK 300
Query: 317 GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKI 376
GY GG V+NV++ V+ GSMSLG+ SPC++AF AGQAAA+KMFETI RKP IDAYD GK+
Sbjct: 301 GYTGGSVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKV 360
Query: 377 LDDIRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFY 436
L DIRGDIEL+DV+FSYPARP+E+ TAALVG+SGSGKSTVI+LIERFY
Sbjct: 361 LGDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGESGSGKSTVINLIERFY 420
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DP+AGEVLIDGINLKEFQL+WIR KIGLV QEPVLF+ SI +NIAYGK++AT +EI+VAT
Sbjct: 421 DPKAGEVLIDGINLKEFQLKWIRSKIGLVCQEPVLFSSSIMENIAYGKENATLQEIKVAT 480
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
ELANAAKFI+ LPQG+DT VGEHGTQLSGGQKQRIAIARAILKDPR+LLLDEATSALD E
Sbjct: 481 ELANAAKFINNLPQGLDTKVGEHGTQLSGGQKQRIAIARAILKDPRVLLLDEATSALDTE 540
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
SE+VVQEALDR+MVNRTTV+VAHRLSTVRNADMIAVIH GK+VEKG+HS+L++D GAYS
Sbjct: 541 SERVVQEALDRVMVNRTTVVVAHRLSTVRNADMIAVIHSGKMVEKGSHSELLKDSVGAYS 600
Query: 617 QLIRLQEANKESE-QTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 675
QLIR QE NK + + D S
Sbjct: 601 QLIRCQEINKGHDAKPSDMASGSSFRNSNLNISREGSVISGGTSSFGNSSRHHSLNVLGL 660
Query: 676 F-GLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVI 734
F GL G + E G + ++E +V R+A LNKPEIPV+L GT+ A NG I
Sbjct: 661 FAGLDLGSGSQRVGQEETGTT--SQEPLRKVSLTRIAALNKPEIPVLLLGTVVAAINGAI 718
Query: 735 LPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794
P++G+LIS VIE FFKP +LKKDSRFWA+I++ALG S ++SP+Q Y FAVAG KLI+
Sbjct: 719 FPLFGILISRVIEAFFKPADQLKKDSRFWAIIFVALGVTSLIVSPSQMYLFAVAGGKLIR 778
Query: 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAG 854
RI+SMCFEK +HMEVSWFDEPE+SSG +GARLS DAA +RALVGDAL+ VQN ++AA+G
Sbjct: 779 RIQSMCFEKAVHMEVSWFDEPENSSGTMGARLSTDAALIRALVGDALSLAVQNAASAASG 838
Query: 855 LIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRT 914
LIIAFTASW+LALIILVMLPLIG++G+ Q+KFMKGFSADAK KYEEASQVANDAVGSIRT
Sbjct: 839 LIIAFTASWELALIILVMLPLIGINGFLQVKFMKGFSADAKSKYEEASQVANDAVGSIRT 898
Query: 915 VASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVED 974
VASFCAEEKVMQ+Y K+CE P+K G++QG +S RLVED
Sbjct: 899 VASFCAEEKVMQMYNKQCEGPIKDGVKQGFISGLGFGFSFFILFCVYATSFYAAARLVED 958
Query: 975 GKATFSDVFKVFFSLTMTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGT 1034
GK TF DVF+VFF+LTM R+SKID SDE+GT
Sbjct: 959 GKTTFIDVFQVFFALTMAAIGISQSSTFAPDSSKAKVAAASIFAIIDRKSKIDSSDETGT 1018
Query: 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094
+LE+VKG+IEL H+SF YP+RP +Q+FRDL L IRAGKTVALVGESGSGKSTV+SLLQRF
Sbjct: 1019 VLENVKGDIELRHLSFTYPARPGIQIFRDLCLTIRAGKTVALVGESGSGKSTVISLLQRF 1078
Query: 1095 YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD--ATEAEI 1152
YDPD+G ITLDGVE++KLQLKWLRQQMGLV QEPVLFNDTIRANIAYGKG + ATE+EI
Sbjct: 1079 YDPDSGQITLDGVELKKLQLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGSEEAATESEI 1138
Query: 1153 QAASEMANAHKFICSLQQ 1170
AA+E+ANAHKFI S+QQ
Sbjct: 1139 IAAAELANAHKFISSIQQ 1156
|
|
| TAIR|locus:2141350 ABCB3 "ATP-binding cassette B3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2231 (790.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 427/592 (72%), Positives = 518/592 (87%)
Query: 39 EKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSET 98
EKT++VPFYKLF+F+DS D LMI+GSIGAIGNG+ PLMTLLFGDLI++ G NQ+N +
Sbjct: 3 EKTKTVPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDI 62
Query: 99 VDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNET 158
V+ VSKV +KFVYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+ FFD ET
Sbjct: 63 VEIVSKVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVET 122
Query: 159 NTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLA 218
+TGEVVGRMSGDTVLI +AMGEKVGKF+QL+ATF+GGF++AF+KGWLLTLVML SIPLLA
Sbjct: 123 STGEVVGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLA 182
Query: 219 MSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYK 278
++G M I++++ SSR Q AYAKA++VVEQT+GSIRTVASFTGEKQAM +Y++F+ AY+
Sbjct: 183 IAGAAMPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYR 242
Query: 279 SGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG 338
+ V++G + G+GLG+V + FCSYAL++W+GG++IL++GY GG+VVNVMV V+ SMSLG
Sbjct: 243 ASVKQGFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLG 302
Query: 339 EASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPN 398
+ +PCL+AF AG+AAA+KMFETI RKP IDA+D GK+L+DIRG+IELRDV FSYPARP
Sbjct: 303 QTTPCLTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPM 362
Query: 399 EQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
E+ TAALVG+SGSGKS+VISLIERFYDP +G VLIDG+NLKEFQL+WI
Sbjct: 363 EEVFGGFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWI 422
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R KIGLVSQEPVLF+ SI +NI YGK++AT EEI+ A +LANAA FIDKLP+G++TLVGE
Sbjct: 423 RGKIGLVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGE 482
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDR+M++RTTVIVA
Sbjct: 483 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVA 542
Query: 579 HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
HRLSTVRNADMIAVIHRGKIVE+G+HS+L++D EGAY+QLIRLQ+ KE ++
Sbjct: 543 HRLSTVRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEPKR 594
|
|
| TAIR|locus:2141365 ABCB5 "ATP-binding cassette B5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2225 (788.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 430/598 (71%), Positives = 515/598 (86%)
Query: 33 EKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN 92
+KG T++VPFYKLF F+DS D LMI+GSIGAI NG+C PLMTLLFG+LI+ G N
Sbjct: 2 KKGNLEANTKTVPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPN 61
Query: 93 QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVA 152
QNN E V++VSKV + VYLG+G+ A+FLQV CWMITGERQA RIR LYLKTILRQD+
Sbjct: 62 QNNEEIVERVSKVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIG 121
Query: 153 FFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLS 212
FFD E TGEVVGRMSGDTVLI DAMGEKVGKF+QL++TF+GGF+IAF++GWLLTLVML+
Sbjct: 122 FFDVEMTTGEVVGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLT 181
Query: 213 SIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF 272
SIPLLAMSG +AI++++ SS+ Q AYAKA++VVEQT+GSIRTVASFTGEKQAMS+YK+
Sbjct: 182 SIPLLAMSGAAIAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKEL 241
Query: 273 LVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT 332
+ AYKS V++G G+GLG++ L+ F +YAL W+GG++IL +GY GG V+NVMV V++
Sbjct: 242 INLAYKSNVKQGFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVS 301
Query: 333 GSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFS 392
S++LG+ASPCL+AF AG+AAA+KMFETI R+P ID +D GK+L+DIRG+IELRDV FS
Sbjct: 302 SSIALGQASPCLTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFS 361
Query: 393 YPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YPARP E+ TT ALVG+SGSGKSTVISLIERFYDP +G+VLIDG++LKE
Sbjct: 362 YPARPKEEVFGGFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKE 421
Query: 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
FQL+WIR KIGLVSQEPVLF+ SI +NI YGK+ AT EEI+ A++LANAAKFIDKLP G+
Sbjct: 422 FQLKWIRGKIGLVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGL 481
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE+VVQEALDRIMVNR
Sbjct: 482 ETLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNR 541
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
TTVIVAHRLSTVRNAD+IAVIHRGKIVE+G+HS+L++D EGAYSQL+RLQE NKES++
Sbjct: 542 TTVIVAHRLSTVRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESKR 599
|
|
| TAIR|locus:2151496 ABCB7 "ATP-binding cassette B7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2009 (712.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 379/614 (61%), Positives = 498/614 (81%)
Query: 32 SEKGKQTEK----TESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLIN 87
+EK K+ + + + FYKLFTFAD D LM+IG++ A+ NGL P M++L G LIN
Sbjct: 2 AEKAKKKKNGGGGNQRIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLIN 61
Query: 88 TFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTIL 147
FG + ++ +VSKVAVKF+YL +G+ SFLQV+CWM+TGERQ+TRIR LYLKTIL
Sbjct: 62 VFGFSDHD-HVFKEVSKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTIL 120
Query: 148 RQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207
RQD+ FFD ETNTGEV+GRMSGDT+LIQD+MGEKVGKF QL+++F+GGF +AFI G LT
Sbjct: 121 RQDIGFFDTETNTGEVIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLT 180
Query: 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMS 267
L +L +PL+ +GG M ++SK + R Q AY +A +VV+Q +GSIRTV +FTGEKQ+M
Sbjct: 181 LALLPCVPLIVGTGGAMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMG 240
Query: 268 NYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVM 327
Y+K L AYKS V++GL +G+G+G++M++V+C+Y ++WYG + I+E+GY GGQV+NV+
Sbjct: 241 KYEKKLEIAYKSMVKQGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVI 300
Query: 328 VAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELR 387
++LTG M+LG+ P L++F AG AAA+KMFETI RKP+IDAYD G++L++I+GDIELR
Sbjct: 301 TSILTGGMALGQTLPSLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELR 360
Query: 388 DVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447
DVYF YPARP+ Q T ALVGQSGSGKSTVISLIERFYDP++GEVLIDG
Sbjct: 361 DVYFRYPARPDVQIFVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDG 420
Query: 448 INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507
I+LK+FQ++WIR KIGLVSQEP+LF +I++NI YGK DA+ +EIR A +LANA+ FIDK
Sbjct: 421 IDLKKFQVKWIRSKIGLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDK 480
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
LPQG++T+VGEHGTQLSGGQKQRIAIARAILK+P+ILLLDEATSALDAESE++VQ+AL +
Sbjct: 481 LPQGLETMVGEHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVK 540
Query: 568 IMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKE 627
+M++RTTV+VAHRL+T+R ADMIAV+ +GK++EKGTH ++++DPEG YSQL+RLQE +K+
Sbjct: 541 LMLSRTTVVVAHRLTTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKK 600
Query: 628 SEQTIDGQ-RKSEI 640
E+ ID + K E+
Sbjct: 601 -EEAIDKEPEKCEM 613
|
|
| TAIR|locus:2117656 ABCB9 "ATP-binding cassette B9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2448 (866.8 bits), Expect = 6.4e-256, Sum P(2) = 6.4e-256
Identities = 481/801 (60%), Positives = 597/801 (74%)
Query: 29 EHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINT 88
E S K K + V F+KLF+FAD D LM +G+I A GNGL P MTL+FG LIN
Sbjct: 2 EEKSSK-KNDGGNQKVSFFKLFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINA 60
Query: 89 FGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILR 148
FG + V +V KVAVKF+YL + S + +FLQV+CWM+TGERQ+ IRGLYLKTILR
Sbjct: 61 FGTTDPD-HMVREVWKVAVKFIYLAVYSCVVAFLQVSCWMVTGERQSATIRGLYLKTILR 119
Query: 149 QDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208
QD+ +FD ETNTGEV+GRMSGDT+LIQDAMGEKVGKF QL+ TFLGGF IAF KG LL
Sbjct: 120 QDIGYFDTETNTGEVIGRMSGDTILIQDAMGEKVGKFTQLLCTFLGGFAIAFYKGPLLAG 179
Query: 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSN 268
V+ S IPL+ ++G M++++SKM+ RGQ AYA+A +VVEQT+G+IRTV +FTGEKQA
Sbjct: 180 VLCSCIPLIVIAGAAMSLIMSKMAGRGQVAYAEAGNVVEQTVGAIRTVVAFTGEKQATEK 239
Query: 269 YKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMV 328
Y+ L AYK+ VQ+GL +G GLG ++ ++FCSY L+VWYG KLI+E+GYNGGQV+NV+
Sbjct: 240 YESKLEIAYKTVVQQGLISGFGLGTMLAVIFCSYGLAVWYGAKLIMEKGYNGGQVINVIF 299
Query: 329 AVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRD 388
AVLTG MSLG+ SP L+AF AG+AAAFKMFETI R P+IDAYD G +L+DIRGDIEL+D
Sbjct: 300 AVLTGGMSLGQTSPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKD 359
Query: 389 VYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448
VYF YPARP+ Q T ALVGQSGSGKSTVISLIERFYDP++G+VLID I
Sbjct: 360 VYFRYPARPDVQIFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNI 419
Query: 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508
+LK+ QL+WIR KIGLVSQEPVLF +IK+NIAYGK+DAT +EIR A ELANAAKFIDKL
Sbjct: 420 DLKKLQLKWIRSKIGLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKL 479
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
PQG+DT+VGEHGTQ+SGGQKQR+AIARAILK+P+ILLLDEATSALDAESE++VQ+AL +
Sbjct: 480 PQGLDTMVGEHGTQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNL 539
Query: 569 MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKES 628
M NRTTV+VAHRL+T+R AD+IAV+H+GKIVEKGTH ++++DPEGAYSQL+RLQE +KE
Sbjct: 540 MSNRTTVVVAHRLTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSKE- 598
Query: 629 EQTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFADTAL 688
E T + +R F L S F
Sbjct: 599 EAT-ESERPE------TSLDVERSGSLRLSSAMRRSVSRNSSSSRHSFSLASNMFFPGVN 651
Query: 689 GEPAGPSQPTEEVA--PEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVI 746
+ E +V +RLA+LNKPEIPV++ G+IAAM +G + PI+GLL+SS I
Sbjct: 652 VNQTDEMEDEENNVRHKKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGLLLSSSI 711
Query: 747 ETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIH 806
F++P LKKDS FWALIY+ALG +F++ P Q+YFF +AG KLI+RIRSMCF+KV+H
Sbjct: 712 NMFYEPAKILKKDSHFWALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMCFDKVVH 771
Query: 807 MEVSWFDEPEHSSGAIGARLS 827
E+SWFD+ +S +G L+
Sbjct: 772 QEISWFDDTANSRSLVGDALA 792
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1476 (524.6 bits), Expect = 1.6e-239, Sum P(2) = 1.6e-239
Identities = 287/588 (48%), Positives = 400/588 (68%)
Query: 37 QTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNN- 95
+ +K +S+PF+KLF+FAD D LM +GS+GAI +G +P+ LLFG ++N FG NQ +
Sbjct: 17 EKKKEQSLPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDL 76
Query: 96 SETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFD 155
+ V +VS+ ++ FVYLG+ +S+ ++ CWM +GERQ +R YL+ +L+QDV FFD
Sbjct: 77 HQMVHEVSRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFD 136
Query: 156 NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIP 215
+ TG++V +S DT+L+QDA+ EKVG F+ ++TFL G ++ F+ W L L+ ++ IP
Sbjct: 137 TDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIP 196
Query: 216 LLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVT 275
+A +GG+ A ++ ++S+ + +YA A + EQ I +RTV S+ GE +A++ Y +
Sbjct: 197 GIAFAGGLYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQY 256
Query: 276 AYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSM 335
K G + G+A G+GLG I S+AL WY G I +GG+ + + + G M
Sbjct: 257 TLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGM 316
Query: 336 SLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395
SLG++ L AF G+AA +K+ E IN++P I GK LD + G+IE +DV FSYP+
Sbjct: 317 SLGQSFSNLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPS 376
Query: 396 RPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455
RP+ T A+VG SGSGKSTV+SLIERFYDP +G++L+DG+ +K QL
Sbjct: 377 RPDVMIFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQL 436
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515
+++R++IGLV+QEP LF +I +NI YGK DAT E+ A ANA FI LP+G DT
Sbjct: 437 KFLREQIGLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQ 496
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTV 575
VGE G QLSGGQKQRIAIARA+LKDP+ILLLDEATSALDA SE +VQEALDR+MV RTTV
Sbjct: 497 VGERGVQLSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTV 556
Query: 576 IVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
+VAHRL T+RN D IAVI +G++VE GTH +L+ GAY+ LIR QE
Sbjct: 557 VVAHRLCTIRNVDSIAVIQQGQVVETGTHEELIAK-SGAYASLIRFQE 603
|
|
| DICTYBASE|DDB_G0293438 abcB2 "ABC transporter B family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 1862 (660.5 bits), Expect = 4.5e-233, Sum P(2) = 4.5e-233
Identities = 379/937 (40%), Positives = 584/937 (62%)
Query: 23 SSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLF 82
S+ + D + K+ E VPF+ LF FA D LMIIG+IGA+ NG+ +P ++++F
Sbjct: 102 STTQSKKLDEGEKKEGEVGPQVPFFSLFRFAKPFDILLMIIGTIGALANGVSMPAISIVF 161
Query: 83 GDLINTFG-DN--QNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIR 139
G L+N+F +N N + V+ V+ A+ F+Y+G G + S+++V WM+ GERQA R R
Sbjct: 162 GRLMNSFSPENLADPNFDLVETVTSNAMYFIYIGCGVFVCSYVEVAFWMLAGERQAVRCR 221
Query: 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA 199
YLK IL+Q++ ++D T + E+ R+S DT+L Q+A+GEK+G FL +TF+ GF++
Sbjct: 222 KAYLKAILKQEIGWYD-VTKSSELSTRISSDTLLFQEAIGEKIGNFLHHTSTFICGFIVG 280
Query: 200 FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASF 259
F+ GW LTLV+ + PL+A +G M M++ ++ +GQ AYAKA V E+ IGSIRTV++F
Sbjct: 281 FVNGWQLTLVIFALTPLIAAAGAFMTKMMADLTKKGQDAYAKAGGVAEEKIGSIRTVSTF 340
Query: 260 TGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYN 319
+GE + Y + L A G ++G+ GIG+G+V L++F +Y+LS WYGGKLI++ +N
Sbjct: 341 SGEPFEVKRYTERLKEALDIGTKKGIMNGIGIGLVFLVLFGTYSLSFWYGGKLIVDRKWN 400
Query: 320 --------GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYD 371
GG V+ V +V+ G+M+LG+ASP +++F G+ AAFK++E ++R +ID +
Sbjct: 401 PVPDRPWQGGDVLTVFFSVIMGAMALGQASPNVASFANGRGAAFKIYEVVDRNSKIDPFS 460
Query: 372 TKGKILDD-IRGDIELRDVYFSYPARPNEQXXXXXXXXXXXXTTAALVGQSGSGKSTVIS 430
T+G+ +++ ++G+IE R++ FSYP+RP+ + TT ALVG SG GKS+VI
Sbjct: 461 TEGRSIEETVQGNIEYRNIGFSYPSRPDVKIFNNFNLTIKKGTTVALVGDSGGGKSSVIG 520
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490
L+ERFYDP GEV +DG N+KE + +R+ IGLVSQEPVLF SI +NI YG ++AT +
Sbjct: 521 LLERFYDPDEGEVYLDGTNIKEINIHSLRRNIGLVSQEPVLFANSIAENIRYGNENATMD 580
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+I A + ANA FI LP+G DT VGE G Q+SGGQKQRIAIARA++KDP+ILLLDEAT
Sbjct: 581 QIIEACKTANAHDFISALPEGYDTQVGEKGVQMSGGQKQRIAIARAMIKDPKILLLDEAT 640
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
SALD+++E +VQ++++++M+ RTT+++AHRLST+++AD IAV+ G IVE GTH +L
Sbjct: 641 SALDSQNELLVQQSIEKLMIGRTTIVIAHRLSTIQDADQIAVVKGGAIVEIGTHPELYA- 699
Query: 611 PEGAYSQLIRLQEANKESEQTIDGQRKSEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 670
G Y+QL+ Q+ + D ++K +
Sbjct: 700 LNGVYTQLVNRQQKGGDDG---DKKKKKKSKESSKDESNNNIGPSSISIDKSIQSIGADS 756
Query: 671 XXXXXFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMA 730
GL + D + +P E+ VP R+ L++ + P L G + A
Sbjct: 757 LETSTIGLVNDN--DNKKKKKK-EKKPQEK---SVPIGRILKLSRGDWPHFLIGLVGATL 810
Query: 731 NGVILPIYGLLISSVIETFFKPP-HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789
NG I+P++ ++ S ++ F + EL + SR AL ++ L + L + Q Y F G
Sbjct: 811 NGAIMPVFSIIFSEILGIFQEQDTDELTRRSRNMALWFILLAVVAALANFIQIYCFTFIG 870
Query: 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNIS 849
KL +R + FE ++ ++ WFD E+S+G + A L+ +A V+ + L ++QNI
Sbjct: 871 EKLTFNLRRLSFESIMRQDIGWFDLTENSTGRLTANLATEATLVQGMTSQRLGLLIQNIV 930
Query: 850 TAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAV 909
T AGL+IAF + W+L L++L +P+IG +G +M F +GFS K Y E QVA++A+
Sbjct: 931 TIVAGLVIAFVSGWKLTLVVLACVPVIGFAGKVEMDFFQGFSQKGKEAYAECGQVASEAI 990
Query: 910 GSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946
G IRTV+SF E K+++ +++ + P++ R+ VS
Sbjct: 991 GGIRTVSSFTCENKILEKFRQCLQKPIQMSFRKSNVS 1027
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2244 (795.0 bits), Expect = 1.2e-232, P = 1.2e-232
Identities = 460/1132 (40%), Positives = 681/1132 (60%)
Query: 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETV-D 100
+SV F++LF FAD D LM GS GA+ +G +P+ LLFG+LIN FG NQ++ + D
Sbjct: 27 QSVAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQHSLRRMTD 86
Query: 101 KVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNT 160
+VSK ++ FVYLG+ +S+L++ CWM TGERQ +R YL+ +LRQDV FFD + T
Sbjct: 87 EVSKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDART 146
Query: 161 GEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220
G+VV +S DT+L+QDA+GEKVG F+ ++TFL G ++ F+ W L L+ ++ IP +A +
Sbjct: 147 GDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFA 206
Query: 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280
GG+ A ++ ++S+ + +YA A + EQ I +RTV S+ GE +A+++Y + + K G
Sbjct: 207 GGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLKLG 266
Query: 281 VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEA 340
+ G+A G+G+G I S+AL WY G I +GG+ + + + G +SLG++
Sbjct: 267 YKAGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLGQS 326
Query: 341 SPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQ 400
L AF G+ A +K+ E I ++P I G+ LD++ G+IE ++V FSYP+RP+
Sbjct: 327 FSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFSYPSRPDVM 386
Query: 401 XXXXXXXXXXXXTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
TAA+VG SGSGKSTV++LIERFYDP G+VL+D +++K QL+W+R
Sbjct: 387 IFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWLRD 446
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520
+IGLV+QEP LF +I +NI YGK DAT E+ A ANA FI LP G +T VGE G
Sbjct: 447 QIGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGERG 506
Query: 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
QLSGGQKQRIAIARA+LK+P+ILLLDEATSALDA SE +VQEALDR+MV RTTV+VAHR
Sbjct: 507 LQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVAHR 566
Query: 581 LSTVRNADMIAVIHRGKIVEKGTHSKLV-EDPEGAYSQLIRLQEANKESEQTIDGQRKSE 639
LST+R DMIAVI +G++VE GTH +L+ + GAY+ LIR QE + + RKS
Sbjct: 567 LSTIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRDFRGPSTRKSR 626
Query: 640 IXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFGLPSGQFADTALGEPAGPSQPTE 699
+ +G AD + + +
Sbjct: 627 ------------SSRLSNSLSTRSLSLRSGSLRNLSYSYSTG--ADGRIEMVSNADNDRK 672
Query: 700 EVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETF-FKPPHELKK 758
AP+ +L LN PE P + G I ++ +G I P + +++S++IE F F+ P+ +++
Sbjct: 673 YPAPKGYFFKLLKLNAPEWPYTILGAIGSILSGFIGPTFAIVMSNMIEVFYFRDPNAMER 732
Query: 759 DSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHS 818
+R + IY+ G + + Q YFF++ G L R+R M ++ +V WFD+ E++
Sbjct: 733 KTREYVFIYIGTGLYAVVAYLVQHYFFSIMGENLTTRVRRMMLAAILRNDVGWFDQEENN 792
Query: 819 SGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878
S + ARLS DAA V++ + + ++ I+QN+++ ++ F W++A++ILV PL+ +
Sbjct: 793 SSLVAARLSTDAADVKSAIAERISVILQNMTSLLVSFVVGFIIEWRVAVLILVTFPLLVL 852
Query: 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938
+ + Q MKGF+ D + + S +A + V +IRTVA+F A++KV+ L+ + P
Sbjct: 853 ANFAQQLSMKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKVLSLFCTELRVPQMH 912
Query: 939 GIRQGMVSXXXXXXXXXXXXXXXXXXXXXXXRLVEDGKATFSDVFKVFFSLTMTXXXXXX 998
+R+ +S LV +TFS V KVF L +T
Sbjct: 913 SLRRSQISGALFGLSQLSLYASEALILWYGAHLVRHHVSTFSKVIKVFVVLVITANTVAE 972
Query: 999 XXXXXXXXXXXXXXXXXXXXXXXRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDV 1058
++IDP + +E V+G+I+ HV F YPSRPDV
Sbjct: 973 TVSLAPEIVRGGESIRSVFAILNYRTRIDPDEPETEPVESVRGDIDFRHVDFAYPSRPDV 1032
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
VF+D +L+IRAG++ ALVG SGSGKSTV++L++RFYDP AG + +DG +I++L ++ LR
Sbjct: 1033 MVFKDFSLRIRAGQSQALVGASGSGKSTVIALIERFYDPLAGKVMIDGKDIRRLNVRSLR 1092
Query: 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
++GLV QEPVLF +I NIAYGK G ATE E+ A+++AN H F+ +L +
Sbjct: 1093 LKIGLVQQEPVLFATSIFENIAYGKDG-ATEEEVIEAAKVANMHGFVSALPE 1143
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3395 | 0.9677 | 0.8370 | yes | no |
| Q9M1Q9 | AB21B_ARATH | No assigned EC number | 0.7341 | 0.9490 | 0.8626 | no | no |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.3968 | 0.9448 | 0.8722 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3941 | 0.9456 | 0.8703 | yes | no |
| O80725 | AB4B_ARATH | No assigned EC number | 0.7435 | 0.9524 | 0.8724 | no | no |
| P21447 | MDR1A_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.3972 | 0.9465 | 0.8738 | yes | no |
| Q9FWX8 | AB12B_ARATH | No assigned EC number | 0.7155 | 0.9601 | 0.8884 | no | no |
| Q54BT3 | ABCB2_DICDI | No assigned EC number | 0.4199 | 0.9702 | 0.8181 | yes | no |
| Q9FWX7 | AB11B_ARATH | No assigned EC number | 0.7365 | 0.9465 | 0.8724 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1178 | |||
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-137 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-133 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-132 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-130 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-124 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-111 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-110 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-108 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 9e-97 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-96 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 9e-96 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 8e-89 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-82 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-81 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-81 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-79 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-78 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 5e-78 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 8e-72 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-70 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-69 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-67 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-66 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-66 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-65 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 6e-65 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-65 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 2e-63 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-63 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-63 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-63 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-61 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 4e-60 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-59 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-58 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 6e-58 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-57 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-55 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-54 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-49 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-49 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-48 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 2e-48 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-46 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-44 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-43 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-43 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-43 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-42 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 2e-42 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-42 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 3e-42 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-41 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-41 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-41 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-40 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-40 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 7e-40 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 8e-40 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-39 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-39 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-38 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-38 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-38 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-38 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-38 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-38 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-38 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-37 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-37 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-37 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-37 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-37 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-37 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-36 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 3e-36 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-36 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-36 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-35 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-35 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-35 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-35 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-35 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-35 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-35 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-34 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-34 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-34 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-33 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-33 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-33 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-33 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-33 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-33 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-33 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-33 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 9e-33 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-32 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-32 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-32 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-32 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-31 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-31 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-31 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-31 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-31 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-31 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 8e-31 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-31 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 9e-31 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-30 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-30 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-30 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-30 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 3e-30 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-30 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-30 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-30 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 6e-30 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-30 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-29 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-29 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-29 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-29 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-29 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-29 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 4e-29 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 4e-29 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-29 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 6e-29 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-29 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-28 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-28 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-28 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-28 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-28 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-28 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-28 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-28 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-28 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-28 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-28 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-28 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 6e-28 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-28 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 9e-28 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-27 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-27 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-27 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-27 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-27 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-26 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-26 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-26 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-26 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-25 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-25 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-25 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-25 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-25 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-25 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-25 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-25 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-25 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 5e-25 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 5e-25 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-25 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-25 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 7e-25 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 7e-25 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-25 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-25 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 9e-25 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-24 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 1e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-24 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-24 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-24 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-24 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-24 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 3e-24 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 4e-24 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-24 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-24 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 4e-24 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 4e-24 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-24 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-24 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-24 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-23 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-23 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-23 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-23 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-23 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-23 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-23 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-23 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-23 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 4e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-23 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 8e-23 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-23 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-23 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-22 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-22 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-22 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-22 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-22 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-22 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-22 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-22 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-22 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-22 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-22 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 5e-22 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 7e-22 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 8e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-22 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-22 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-21 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-21 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-21 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-21 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-21 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 7e-21 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-20 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-20 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 2e-20 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-20 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-20 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 3e-20 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 5e-20 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 5e-20 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 5e-20 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 6e-20 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-20 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-20 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 8e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 9e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-19 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-19 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-19 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-19 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-19 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-19 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-19 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 7e-19 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-18 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-18 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-18 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-18 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-18 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-18 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 3e-18 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-18 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-18 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-18 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-18 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-18 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-18 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 6e-18 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-18 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 8e-18 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-17 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-17 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-17 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-17 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 7e-17 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-17 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-16 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-16 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-16 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-16 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-16 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 3e-16 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-16 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-16 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-16 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-16 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-16 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 5e-16 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-16 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-15 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-15 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-15 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 2e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-15 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-15 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-15 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 5e-15 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-15 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 6e-15 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 6e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-15 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 7e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-15 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 8e-15 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 8e-15 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-15 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-14 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-14 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-14 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-14 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 3e-14 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-14 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 4e-14 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 5e-14 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-14 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-14 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-13 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-13 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 1e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-13 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-13 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-13 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-13 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-13 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 4e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 4e-13 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-13 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 8e-13 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-13 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 8e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-13 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 8e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-12 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-12 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 2e-12 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-12 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-12 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 4e-12 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 4e-12 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-12 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 5e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 5e-12 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 5e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 6e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-12 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 8e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-12 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 9e-12 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-11 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-11 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-11 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-11 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-11 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 5e-11 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-11 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-11 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 7e-11 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 7e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 8e-11 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 9e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-10 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-10 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-10 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-10 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-10 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-10 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-10 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-10 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-10 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-10 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 4e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 4e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-10 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 5e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 5e-10 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 5e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-10 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 5e-10 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-10 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-10 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 7e-10 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-10 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-10 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-10 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-09 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 2e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-09 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-09 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-09 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-09 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-09 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-09 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 4e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-09 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-09 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 7e-09 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 7e-09 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-09 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 8e-09 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-09 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 9e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 9e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-08 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-08 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-08 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-08 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 2e-08 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-08 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 4e-08 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 5e-08 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-08 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-08 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-08 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 9e-08 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 9e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-07 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 1e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 1e-07 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-07 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-07 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-07 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-07 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-07 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 3e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-07 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-07 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 6e-07 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 9e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 9e-07 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 9e-07 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 9e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-06 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-06 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-06 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-06 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-06 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-06 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 4e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 5e-06 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 6e-06 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 6e-06 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-06 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 6e-06 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 7e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-06 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 8e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-06 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-05 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-05 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-05 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-05 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-05 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-05 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-05 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 3e-05 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 3e-05 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-05 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 4e-05 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 4e-05 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 4e-05 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-05 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 5e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 6e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 6e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 7e-05 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 9e-05 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-04 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 1e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-04 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 1e-04 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-04 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 5e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 7e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 7e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-04 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-04 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 0.001 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.001 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.001 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.002 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.002 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.003 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 0.003 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.003 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.003 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.004 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.004 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.004 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 415 bits (1068), Expect = e-137
Identities = 148/239 (61%), Positives = 193/239 (80%), Gaps = 1/239 (0%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++V F YP+RP+ I G S++I G T ALVG SG GKSTV+SL+ERFYDP +GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L+DG+++++ L+W+R +IGLVSQEPVLF G+I +NI YGK DAT EE+ A + AN
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
FI LP G DTLVGE G+QLSGGQKQRIAIARA+L++P+ILLLDEATSALDAESEK+VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
ALDR M RTT+++AHRLST+RNAD+IAV+ G++VE+GTH +L+ +G Y++L++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 416 bits (1072), Expect = e-133
Identities = 196/546 (35%), Positives = 310/546 (56%), Gaps = 2/546 (0%)
Query: 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQAT 136
TL + D+ + ++ +++ + + + + + + GER
Sbjct: 32 AATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLVTWLGERVVA 91
Query: 137 RIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196
IR ++ +FFD +GEVV R++ DT L+Q +G + L+ +GG
Sbjct: 92 DIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGL 150
Query: 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTV 256
++ FI LT ++L ++PL+ + + + K+S Q A A S +T+G+IRTV
Sbjct: 151 IMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTV 210
Query: 257 ASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE 316
+F E S + + AY++ Q + +V+++VF + +W G ++
Sbjct: 211 QAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAG 270
Query: 317 GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKI 376
+ G + + + + S+G S AA ++ E + +P+I A +
Sbjct: 271 KMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTL 330
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
+RG+IE V F+YPARP++ G ++++ G T ALVG SG+GKST+ L+ RFY
Sbjct: 331 PVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY 390
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DPQ+G +L+DG++L++ +R ++ LV Q+PVLF S+ +NI YG+ DAT EE+ A
Sbjct: 391 DPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA 450
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
A+A +FI LP+G DT +GE G LSGGQ+QRIAIARAILKD ILLLDEATSALDAE
Sbjct: 451 RAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAE 510
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
SE++VQ+AL+ +M RTT+I+AHRL+TV AD I V+ +G+IV +GTH++L+ G Y+
Sbjct: 511 SEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYA 569
Query: 617 QLIRLQ 622
+L RLQ
Sbjct: 570 RLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 415 bits (1068), Expect = e-132
Identities = 191/580 (32%), Positives = 324/580 (55%), Gaps = 16/580 (2%)
Query: 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVS 103
+L + L I+ + + L LPL L G +I+ + ++
Sbjct: 2 SLLRRLLKYLKYKLLLLAILLLLLSALLSLLLPL---LIGRIIDAL------LADLGELL 52
Query: 104 KVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEV 163
++ + + L + G+ LQ G++ +R + +LR ++FFD +G++
Sbjct: 53 ELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK-AKSGDL 111
Query: 164 VGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223
+ R++ D + + + + + +G ++ F W L L++L +PLLA+ +
Sbjct: 112 ISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSL 171
Query: 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283
+A K+S R + A + + + +++ IR + +F E + + +++ ++ ++
Sbjct: 172 LARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRA 231
Query: 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343
+ +++L+ L + GG L+L G + ++ +L + +
Sbjct: 232 SRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEV 291
Query: 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFS 403
+S AAA ++FE ++ +PE++ K G IE +V FSYP + +
Sbjct: 292 VSLLQRASAAAERLFELLDEEPEVEDPPDPLKDTI---GSIEFENVSFSYP--GKKPVLK 346
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
S SI G A+VG SGSGKST+I L+ R YDP +GE+LIDGI++++ L +RK+IG
Sbjct: 347 DISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406
Query: 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
+VSQ+P+LF+G+I++NIA G+ DAT EEI A +LANA +FI LP G DT+VGE G L
Sbjct: 407 IVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583
SGGQ+QR+AIARA+L++P IL+LDEATSALD E+E ++Q+AL +++ RTT+I+AHRLST
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST 526
Query: 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
++NAD I V+ G+IVE+GTH +L+ G Y++L + Q
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 415 bits (1069), Expect = e-130
Identities = 208/520 (40%), Positives = 305/520 (58%), Gaps = 30/520 (5%)
Query: 112 LGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDT 171
L I S +++ L+ + T R RIR +++LRQD+ FFD E TGE+ R+S DT
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD-ENKTGELTSRLSSDT 268
Query: 172 VLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKM 231
+ ++ V L+ + LG LT+V L ++PL+ ++ V +
Sbjct: 269 QTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLL 328
Query: 232 SSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLA-AG-- 288
S Q A AKA V E+ + +RTV SF E+ S +K+ L + ++ LA AG
Sbjct: 329 SEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYAGYL 388
Query: 289 -----IGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343
+G+ + +L++ +YGG+L+L + G +V+ ++ LGEA
Sbjct: 389 WTTSVLGMLIQVLVL--------YYGGQLVLTGKVSSGNLVSFLLY----QEQLGEAVRV 436
Query: 344 LSAFGAG--QA--AAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNE 399
LS +G QA A+ K+FE ++RKP I T ++ G IE +DV FSYP RP+
Sbjct: 437 LSYVYSGMMQAVGASEKVFEYLDRKPNIP--LTGTLAPLNLEGLIEFQDVSFSYPNRPDV 494
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
+ G + ++ G ALVG SGSGKSTV +L++ Y P G+VL+DG+ L ++ ++
Sbjct: 495 PVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLH 554
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519
+++ LV QEPVLF+GS+++NIAYG D EEI A + ANA FI + P G DT VGE
Sbjct: 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
G+QLSGGQKQRIAIARA+++ PR+L+LDEATSALDAE E+++QE R +RT +++AH
Sbjct: 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAH 672
Query: 580 RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
RLSTV AD I V+ +G +VE GTH +L+ED G Y L+
Sbjct: 673 RLSTVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 417 bits (1073), Expect = e-124
Identities = 336/1262 (26%), Positives = 577/1262 (45%), Gaps = 208/1262 (16%)
Query: 6 NSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGS 65
N++ ++EV K+ + G +K KT+ +PF+ F ++ L+ +
Sbjct: 11 NNSGGGNLSIKDEVEKELNKKGTFELYKK----IKTQKIPFFLPFKCLPASHRKLLGVSF 66
Query: 66 IGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125
+ A +G LP +FG ++ N N E V+ + V +GI I SF+
Sbjct: 67 VCATISGGTLPFFVSVFGVIMK----NMNLGENVNDI---IFSLVLIGIFQFILSFISSF 119
Query: 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVG-K 184
C + + ++ +LK++ QD F DN N G +++ D + + +G K
Sbjct: 120 CMDVVTTKILKTLKLEFLKSVFYQDGQFHDN--NPGS---KLTSDLDFYLEQVNAGIGTK 174
Query: 185 FLQLM---ATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAK 241
F+ + + FLG ++ + K LTL + PL+ + G V+ K++ + Y
Sbjct: 175 FITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICG-VICNKKVKINKKTSLLYNN 233
Query: 242 -AASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300
S++E+ + IRTV S+ GEK + + K ++ + +GM+ +
Sbjct: 234 NTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILA 293
Query: 301 SYALSVWYGGKLILEE--------GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQA 352
SYA WYG ++I+ + ++GG V+++++ VL L P ++ +
Sbjct: 294 SYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLE 353
Query: 353 AAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSG 412
A ++E INRKP ++ D GK L DI+ I+ ++V F Y R + +I+ + +++ G
Sbjct: 354 ATNSLYEIINRKPLVENND-DGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEG 411
Query: 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVL 471
T A VG+SG GKST++ LIER YDP G+++I D NLK+ L+W R KIG+VSQ+P+L
Sbjct: 412 KTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLL 471
Query: 472 FTGSIKDNIAY------------------------GKDDATTEEIRVA------------ 495
F+ SIK+NI Y K+ + + A
Sbjct: 472 FSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDS 531
Query: 496 ---------------TELANAAK------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
+E+ + +K F+ LP +TLVG + ++LSGGQKQRI+IA
Sbjct: 532 NELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIA 591
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAV 592
RAI+++P+IL+LDEATS+LD +SE +VQ+ ++ + NR T+I+AHRLST+R A+ I V
Sbjct: 592 RAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFV 651
Query: 593 I---HRGK--------------------------------------------IVEKGTHS 605
+ RG I+E+GTH
Sbjct: 652 LSNRERGSTVDVDIIGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHD 711
Query: 606 KLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIG 665
L+++ G Y +I Q+ + + D + S+ M+S + G+S
Sbjct: 712 ALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSD--MKSSAYKDSERGYDPDEMNGNSKH 769
Query: 666 NSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTR-RLAYLN----KPEIPV 720
+ S S + ++ G + + P+ P R+ Y K ++ +
Sbjct: 770 ENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTI 829
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
I + A G + P++ LL + + T F + L+ +S ++L L + F+
Sbjct: 830 IALSILVA---GGLYPVFALLYAKYVSTLFDFAN-LEANSNKYSLYILVIAIAMFISETL 885
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
++Y+ V G K+ + ++ FE +++ E+S+FD+ +H+ G + A ++ D
Sbjct: 886 KNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRD----------- 934
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVM----LPLI-GVSGYTQMKFMKGFSADAK 895
V + T I+ FT L L+ +VM P++ V T FM+ F+ A+
Sbjct: 935 ----VHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRAR 990
Query: 896 MK-------------------------YEEASQVANDAVGSIRTVASFCAEEKVMQLYKK 930
+ +++ S + +A ++ TV + E+ L +K
Sbjct: 991 LTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEK 1050
Query: 931 KCEAPMKTGIRQGMVSGGGFG----ASFFL-LFAFYAASFYAGARLVEDGKATFSDVFKV 985
+ K R+ +V+ +G A F+ FA++ SF L+ G D K
Sbjct: 1051 AIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSF-----LIRRGTILVDDFMKS 1105
Query: 986 FFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE---DVKGE 1042
F+ T + S DS AK + + +I R+S ID D G ++ D+KG+
Sbjct: 1106 LFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGK 1165
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ V+F+Y SRP+V +++DL + KT A+VGE+GSGKSTV+SLL RFYD H
Sbjct: 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHH 1225
Query: 1103 TL 1104
+
Sbjct: 1226 IV 1227
|
Length = 1466 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 363 bits (935), Expect = e-111
Identities = 173/529 (32%), Positives = 283/529 (53%), Gaps = 25/529 (4%)
Query: 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVV 164
+A+ + + + L+ G+R + G + + +LR +++F+ + GE++
Sbjct: 196 LAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEK-RSVGEII 254
Query: 165 GRMSGDTVLIQDAM-GEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223
R+ + I++ + G + + L+ + ++ W LTL++L++IPL + +
Sbjct: 255 SRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY-SWKLTLIVLAAIPLNVLITLI 312
Query: 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFL---VTAYKSG 280
++ + + + A+ S + +TI I TV + E + S + L V
Sbjct: 313 FQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKT 372
Query: 281 VQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEA 340
+ L ++ + S L +W+G L+LE GQ+V +L G
Sbjct: 373 EKLALILNTIKSLLQQL---SSVLILWFGAILVLEGELTLGQLV--AFNMLAGYFI---- 423
Query: 341 SPCLSAFGAGQA-----AAFKMFETI-NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYP 394
SP A + I + PE + D L ++G+IE +V F Y
Sbjct: 424 SPITRLSQLWTDFQQAKVALERLGDILDTPPEQEG-DKTLIHLPKLQGEIEFENVSFRYG 482
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
+ S+ I G A+VG+SGSGKST++ L+ Y PQ G +L+DG++L +
Sbjct: 483 PDDPPVL-EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDID 541
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
L +R+++G V Q+P LF+GSI++NIA G +AT EEI A +LA A +FI+ LP G DT
Sbjct: 542 LASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDT 601
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
VGE G LSGGQ+QR+A+ARA+L P+ILLLDEATSALD E+E ++ + L +I+ RT
Sbjct: 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTV 661
Query: 575 VIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
+I+AHRLST+R+AD I V+ +GKIVE+G+H +L+ G Y++L + QE
Sbjct: 662 IIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 343 bits (881), Expect = e-110
Identities = 128/235 (54%), Positives = 175/235 (74%), Gaps = 2/235 (0%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E ++V F YP + S+ I +G T ALVG SGSGKST+++LI RFYD +G +
Sbjct: 1 VEFKNVTFRYPGDGPP-VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
LIDG +++++ L +R++IGLVSQ+ LF ++ +NIAYG+ AT EE+ A ANA +
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
FI +LP+G DT++GE G +LSGGQ+QRIAIARA+LKDP IL+LDEATSALD ESE++VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
AL+R+M NRTT ++AHRLST+ NAD I V+ GKIVE+GTH +L+ G Y++L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 351 bits (903), Expect = e-108
Identities = 188/566 (33%), Positives = 303/566 (53%), Gaps = 13/566 (2%)
Query: 59 ALMIIGSIGAIGNGLCLPLMTLLFGDLIN-TFGDNQNNSETVDKVSKVAVKFVYLGIGSG 117
A +++ + I + L L++ FG + V + + L + G
Sbjct: 14 AGLVLAGVAMILVAATESTLAALLKPLLDDGFG-----GRDRSVLWWVPLVVIGLAVLRG 68
Query: 118 IASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDA 177
I SF+ + IR + +L V+FFD + TG ++ R++ D+ + A
Sbjct: 69 ICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASA 127
Query: 178 MGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQG 237
+ ++ T +G F++ W LTL+++ +P+L++ ++ + ++S Q
Sbjct: 128 ATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQN 187
Query: 238 AYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297
+ + +V E+T+ R V F G+ + + ++ A I + LI
Sbjct: 188 SMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLI 247
Query: 298 VFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKM 357
+ A+ ++ G + A++ L + + G AAA +
Sbjct: 248 ASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESL 307
Query: 358 FETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAAL 417
F ++ PE D T + ++ RGD+E R+V F YP R S+ I G T AL
Sbjct: 308 FTLLDSPPEKD---TGTRAIERARGDVEFRNVTFRYPGRDRP-ALDSISLVIEPGETVAL 363
Query: 418 VGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477
VG+SGSGKST+++LI RFY+P +G++L+DG +L ++ L +R+++ LVSQ+ VLF +I
Sbjct: 364 VGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423
Query: 478 DNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536
+NIAYG+ + A EI A A A F+DKLP G+DT +GE+G LSGGQ+QR+AIARA
Sbjct: 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483
Query: 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596
+LKD IL+LDEATSALD ESE++VQ AL+R+M RTT+++AHRLST+ AD I V+ G
Sbjct: 484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDG 543
Query: 597 KIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+IVE+GTH++L+ G Y+QL +Q
Sbjct: 544 RIVERGTHNELL-ARNGLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 320 bits (822), Expect = 9e-97
Identities = 194/572 (33%), Positives = 321/572 (56%), Gaps = 29/572 (5%)
Query: 61 MIIGSIGAIGNGLCLPLMTLLFGDLI-NTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ + I N M L L+ + FG + S V K + V + L I GI
Sbjct: 27 LIVAGVALILNAASDTFMLSLLKPLLDDGFG-KADRS--VLKWMPLVV--IGLMILRGIT 81
Query: 120 SFLQVTC--WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDA 177
SF+ C W ++G+ T R L+ ++ V+FFD ++ TG ++ R++ D+ + +
Sbjct: 82 SFISSYCISW-VSGKVVMTMRRRLF-GHMMGMPVSFFDKQS-TGTLLSRITYDSEQVASS 138
Query: 178 MGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQG 237
+ ++ A+ +G F++ F W L+L+++ P+++++ V++ +S Q
Sbjct: 139 SSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQN 198
Query: 238 AYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLI 297
+ + EQ + + V F G++ + K + G++ A+ I ++ LI
Sbjct: 199 TMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLI 258
Query: 298 VFCSYALS-VWYGGKL--ILEEGYNGGQVV--NVMVAVLTGSMSLGEASPCLSAFGAGQA 352
S AL+ V Y +++ G V + M+A++ SL + + F G A
Sbjct: 259 A--SLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVN---AQFQRGMA 313
Query: 353 AAFKMFETINRKPEIDAYDTKGKI-LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISS 411
A +F ++ + E D +GK ++ +GDIE R+V F+YP + + I +
Sbjct: 314 ACQTLFAILDLEQEKD----EGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPA 368
Query: 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471
G T ALVG+SGSGKST+ +L+ RFYD GE+L+DG +L+++ L +R ++ LVSQ L
Sbjct: 369 GKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL 428
Query: 472 FTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
F +I +NIAY + + + E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QR
Sbjct: 429 FNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQR 488
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI 590
IAIARA+L+D IL+LDEATSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I
Sbjct: 489 IAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEI 548
Query: 591 AVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
V+ G+IVE+GTH++L+ G Y+QL ++Q
Sbjct: 549 LVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 305 bits (784), Expect = 4e-96
Identities = 117/239 (48%), Positives = 162/239 (67%), Gaps = 3/239 (1%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V F+Y P + S +I +G A+VG SGSGKST++ L+ RFYD +G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
LIDG +++E L +R+ IG+V Q+ VLF +I NI YG+ DAT EE+ A + A
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
I + P G DT+VGE G +LSGG+KQR+AIARAILK+P ILLLDEATSALD +E+ +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
AL + RTT+++AHRLST+ NAD I V+ G+IVE+GTH +L+ G Y+++ + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 304 bits (781), Expect = 9e-96
Identities = 113/228 (49%), Positives = 169/228 (74%), Gaps = 2/228 (0%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G+IE +V FSY + + + SI G T A+VG +G+GK+T+I+L+ RFYDPQ G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
++LIDGI++++ + +R IG+V Q+ LF+G+I +NI G+ +AT EE+ A + A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
FI KLP G DT++GE+G LS G++Q +AIARA+L+DP+IL+LDEATS +D E+EK++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
QEAL+++M RT++I+AHRLST++NAD I V+ GKI+E+GTH +L+
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 8e-89
Identities = 127/264 (48%), Positives = 172/264 (65%), Gaps = 7/264 (2%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
L ++G +E DV FSY Q S G T A+VG +G+GKST+I+L++R +
Sbjct: 328 LGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF 385
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DPQ+G +LIDG +++ +R+ I +V Q+ LF SI+DNI G+ DAT EE+R A
Sbjct: 386 DPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAA 445
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
E A A FI++ P G DT+VGE G QLSGG++QR+AIARA+LKDP IL+LDEATSALD E
Sbjct: 446 ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+E V+ ALD +M RTT I+AHRLSTVRNAD I V G++VE G+ +LV G ++
Sbjct: 506 TEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELV-ARGGRFA 564
Query: 617 QLIR----LQEANKESEQTIDGQR 636
L+R LQE + + +G
Sbjct: 565 ALLRAQGMLQEDERRKQPAAEGAN 588
|
Length = 588 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 279 bits (716), Expect = 3e-82
Identities = 138/452 (30%), Positives = 232/452 (51%), Gaps = 16/452 (3%)
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
+L + + + ++ + LLI +I+ EL + L+ L L +L
Sbjct: 16 LLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE----LLLLLLLLALLGGVLRAL 71
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
QSY + G K++ +R FEK++ + +S+FD+ SG + +RL+ D +V LV
Sbjct: 72 QSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTV 129
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG-VSGYTQMKFMKGFSADAKMKYE 899
L + +I L++ F+ SW+LALI+L++LPL+ V K K +
Sbjct: 130 LVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVRE-ALG 188
Query: 900 EASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFA 959
E + +++ IR + +F AE++ ++ +++ E + +R + L
Sbjct: 189 ELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSSL 248
Query: 960 FYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSSFSSDSNKAKSAAASIFA 1018
G LV G T + F + + I Q S +A +AA +F
Sbjct: 249 GTVLVLALGGFLVLSGSLTVGALA-AFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE 307
Query: 1019 IIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVG 1078
++D E +++ + L+D G IE +VSF YP V +D++ I G+ VA+VG
Sbjct: 308 LLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVAIVG 362
Query: 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138
SGSGKST++ LL R YDP +G I +DG++I+ + L LR+++G+VSQ+P+LF+ TIR N
Sbjct: 363 PSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422
Query: 1139 IAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
IA G+ DAT+ EI+ A ++ANAH+FI +L
Sbjct: 423 IALGR-PDATDEEIEEALKLANAHEFIANLPD 453
|
Length = 567 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 265 bits (680), Expect = 1e-81
Identities = 111/221 (50%), Positives = 159/221 (71%)
Query: 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437
D ++G ++ ++V F+YP RP+ + S ++ G ALVG SGSGKSTV++L+E FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 438 PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATE 497
PQ G+VL+DG + +++ +++ K+ LV QEPVLF S++DNIAYG + E ++ A +
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A+A FI +L G DT VGE G+QLSGGQKQR+AIARA++++P++L+LDEATSALDAES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
E+ VQ+AL RT +++AHRLSTV AD I V+ G+I
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 3e-81
Identities = 156/441 (35%), Positives = 236/441 (53%), Gaps = 52/441 (11%)
Query: 206 LTLVMLSSIPLLAM-SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQ 264
LT V++ S+ A+ S V I+ ++ + + + A + +VE G I T+ + E Q
Sbjct: 280 LTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTG-IETIKATATEPQ 338
Query: 265 AMSNYKKFL---VTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGG 321
+ + + L V A G AG + ++ + F A+ +W+G L
Sbjct: 339 FQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTF---AILLWFGAHL--------- 386
Query: 322 QVVNVMVAVLTGSMSLGEASPCLSAFG--AGQ--------AAAFKMFE----TINRKPEI 367
V+ G++S G+ L AF AG+ A ++ F+ + R +I
Sbjct: 387 --------VIGGALSPGQ----LVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDI 434
Query: 368 -----DAYDTKGKILDDIRGDIELRDVYFSY-PARPNEQIFSGFSISISSGTTAALVGQS 421
+ L ++RG I ++ F Y P P ++ S ++ I G +VG S
Sbjct: 435 LNSPTEPRSAGLAALPELRGAITFENIRFRYAPDSP--EVLSNLNLDIKPGEFIGIVGPS 492
Query: 422 GSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481
GSGKST+ L++R Y PQ G+VL+DG++L W+R+++G+V QE VLF+ SI+DNIA
Sbjct: 493 GSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIA 552
Query: 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
A E + A +LA A FI +LPQG +T VGE G LSGGQ+QRIAIARA++ +P
Sbjct: 553 LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNP 612
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
RIL+ DEATSALD ESE ++ + I RT +I+AHRLSTVR D I V+ +G+I E
Sbjct: 613 RILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672
Query: 602 GTHSKLVEDPEGAYSQLIRLQ 622
G H +L+ G Y++L + Q
Sbjct: 673 GRHEELLALQ-GLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 258 bits (661), Expect = 1e-79
Identities = 92/214 (42%), Positives = 130/214 (60%), Gaps = 43/214 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++V FSYP RP + S++I G A+VG SGSGKST++ L+ R YDP +GE+
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
LIDG++L++ L+ +RK I V Q+P LF+G+I++NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
LSGGQ+QRIAIARA+L+DP IL+LDEATSALD E+E ++ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
AL + +T +++AHRLST+R+AD I V+ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 257 bits (658), Expect = 2e-78
Identities = 117/240 (48%), Positives = 158/240 (65%), Gaps = 4/240 (1%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I V F Y +P+ I S+ I G +VG+SGSGKST+ LI+RFY P+ G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
VL+DG +L W+R+++G+V QE VLF SI+DNIA + E + A +LA A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
FI +LP+G DT+VGE G LSGGQ+QRIAIARA++ +PRIL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ I RT +I+AHRLSTV+NAD I V+ +G+IVE+G+H +L+ G Y+ L +LQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELL-AENGLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 265 bits (680), Expect = 5e-78
Identities = 141/366 (38%), Positives = 208/366 (56%), Gaps = 7/366 (1%)
Query: 255 TVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL 314
TV F E+ Y L T K+ ++ ++ + L +F + + L +
Sbjct: 134 TVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLV-LNFGQTAIFSTGLRVMMTMSALGV 192
Query: 315 EEGYNG-GQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTK 373
EEG G +VNV + S+ L KMF+ ++ + E+
Sbjct: 193 EEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVS-DAPD 251
Query: 374 GKILDDIR-GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432
L +R G + +V F+Y P I +G S +I G T A+VG+SG+GKST++ L+
Sbjct: 252 APPLWPVRLGAVAFINVSFAY--DPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLL 309
Query: 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEI 492
RFYD +G + IDG ++++ Q +R+ IG+V Q+ VLF +I NI YG+ DAT EE+
Sbjct: 310 FRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEV 369
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A E A FI LP+G DT VGE G +LSGG+KQR+AIAR ILK+P IL+LDEATSA
Sbjct: 370 GAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSA 429
Query: 553 LDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
LD +E+ +Q AL + RTT+++AHRLST+ +AD I V+ G+IVE+GTH +L+
Sbjct: 430 LDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELL-AAG 488
Query: 613 GAYSQL 618
G Y+++
Sbjct: 489 GLYAEM 494
|
Length = 497 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 254 bits (650), Expect = 8e-72
Identities = 144/480 (30%), Positives = 236/480 (49%), Gaps = 25/480 (5%)
Query: 699 EEVAPEVPTRRLAYLNKPEIPVILAG----TIAAMANGVILPIY-GLLISSVIETFFKPP 753
E A RL L+ + P +++ T++++ + +P Y G +I ++ K P
Sbjct: 143 SETAD--LLFRLLGLSGRDWPWLISAFVFLTLSSLG-EMFIPFYTGRVIDTLGGD--KGP 197
Query: 754 HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFD 813
L F L L S + + + F ++ RIR F ++ ++ +FD
Sbjct: 198 PALASAIFFMCL----LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFD 253
Query: 814 EPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVML 873
E + +G + +RLS+D ++ + + +++N+ L S +L ++ L+ L
Sbjct: 254 E--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL 311
Query: 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCE 933
PL+ ++ K + S + + +A+QVA +A+ +RTV SF AEE +K+ E
Sbjct: 312 PLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALE 371
Query: 934 APMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTA 993
++ R+ + G + L Y G +LV GK + ++ V F L
Sbjct: 372 ETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNL--VSFLLYQEQ 429
Query: 994 IG--ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL-EDVKGEIELHHVSF 1050
+G + S S +A A+ +F +DR+ I + GT+ +++G IE VSF
Sbjct: 430 LGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT---GTLAPLNLEGLIEFQDVSF 486
Query: 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110
YP+RPDV V + L + G+ VALVG SGSGKSTV +LLQ Y P G + LDGV +
Sbjct: 487 SYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLV 546
Query: 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
+ +L +Q+ LV QEPVLF+ ++R NIAYG D + EI AA++ ANAH FI
Sbjct: 547 QYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPN 605
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 232 bits (594), Expect = 7e-70
Identities = 94/221 (42%), Positives = 140/221 (63%), Gaps = 1/221 (0%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G IE R+V FSYP + + S++I +G A++G+ GSGKST++ L+ Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
VL+DG ++++ +R+ IG V Q+ LF G+++DNI G A E I A ELA
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
F++K P G+D +GE G LSGGQ+Q +A+ARA+L DP ILLLDE TSA+D SE+ +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
+E L +++ ++T +I+ HR S + D I V+ G+IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 247 bits (632), Expect = 2e-69
Identities = 155/536 (28%), Positives = 244/536 (45%), Gaps = 97/536 (18%)
Query: 133 RQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFL--QLMA 190
+ A + +L ILR V FF + + G++ R+ + ++V +FL QL
Sbjct: 224 KLAVGMSARFLWHILRLPVRFFA-QRHAGDIASRVQ---------LNDQVAEFLSGQLAT 273
Query: 191 TFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIM-------ISKM----SSRGQGAY 239
T L ++ F L+ML P+L + G A + +S+ + R Q
Sbjct: 274 TALDAVMLVF-----YALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDA 328
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSN----YKKFLVTAYKSGVQEGLAAGIGLGMVM 295
K V + SI T+ + E S K L + GV + + +
Sbjct: 329 GKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTS 388
Query: 296 LIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAF 355
L + AL + GG ++E G +++G L AF Q+
Sbjct: 389 L----NSALILVVGGLRVME-----------------GQLTIG----MLVAF---QSLMS 420
Query: 356 KMFETIN-------RKPEIDA---------------YDTKGKILDD-------IRGDIEL 386
E +N E++ + + + G +EL
Sbjct: 421 SFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVEL 480
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446
R++ F Y + + FS+++ G ALVG SGSGKST+ L+ Y P +GE+L D
Sbjct: 481 RNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFD 539
Query: 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFID 506
GI +E + + + +V Q+ LF G+++DN+ ++ A + A I
Sbjct: 540 GIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVIT 599
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
P G D + E G LSGGQ+QR+ IARA++++P IL+LDEATSALD E+EK++ + L
Sbjct: 600 SRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR 659
Query: 567 RIMVNR--TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
R R T +IVAHRLST+R+ D I V+ RGK+V++GTH +L GAY++LIR
Sbjct: 660 R----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 238 bits (608), Expect = 2e-67
Identities = 127/411 (30%), Positives = 212/411 (51%), Gaps = 13/411 (3%)
Query: 765 LIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGA 824
L + L + A+ Y G +++ IR F +I + S+FD+ + SG + +
Sbjct: 62 AFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVS 119
Query: 825 RLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQM 884
RL+ D +++++G +L+ ++N GLI+ F S +L ++L+ +PL+ +
Sbjct: 120 RLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFG 179
Query: 885 KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG----- 939
+ ++ S +++ + +A A + +G+IRTV +F E+ + E +
Sbjct: 180 RRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR 239
Query: 940 IRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQS 999
R + + L+F + GA V GK + + + F M A I
Sbjct: 240 TRALLTAI-----VIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTL 294
Query: 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQ 1059
S + +A AA + ++ E I T+ ++GEIE V+F YP+RPD
Sbjct: 295 SEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQP 354
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
LNL +R G+TVALVG SG+GKST+ LL RFYDP +G I LDGV++++L LR
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRA 414
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
+M LV Q+PVLF ++ NI YG+ DAT+ E++AA+ A+AH+FI +L +
Sbjct: 415 RMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPE 464
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 235 bits (601), Expect = 2e-66
Identities = 136/471 (28%), Positives = 225/471 (47%), Gaps = 35/471 (7%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW---- 763
R +Y+ +P ++ +A + L+ +++ F + S W
Sbjct: 4 RLWSYV-RPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFG----GRDRSVLWWVPL 58
Query: 764 ALIYLAL--GAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGA 821
+I LA+ G SF+ +Y + NK+++ IR FEK++ + VS+FD +G
Sbjct: 59 VVIGLAVLRGICSFV----STYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGT 112
Query: 822 IGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY 881
+ +R++ D+ V + DA +V+ T I+ SWQL LI++VMLP++ +
Sbjct: 113 LLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMR 172
Query: 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIR 941
K ++ S + + + + VA + + R V F + + + + ++
Sbjct: 173 RVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMK 232
Query: 942 QGMVSGGG-------FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
M S G AS L + A F A A G T D ++
Sbjct: 233 --MTSAGSISSPITQLIASLALAVVLFIALFQAQA-----GSLTAGDFTAFITAMIALIR 285
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
+ ++ ++ + +AA S+F ++D D +E +G++E +V+F+YP
Sbjct: 286 PLKSLTNVNAPMQRGLAAAESLFTLLDSP---PEKDTGTRAIERARGDVEFRNVTFRYPG 342
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
R D ++L I G+TVALVG SGSGKST+V+L+ RFY+PD+G I LDG ++ L
Sbjct: 343 R-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL 401
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI 1165
LR+Q+ LVSQ+ VLFNDTI NIAYG+ A AEI+ A A A F+
Sbjct: 402 ASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFV 452
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 2e-66
Identities = 109/278 (39%), Positives = 173/278 (62%), Gaps = 4/278 (1%)
Query: 349 AGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSIS 408
AG+AAA K+F + K ++ ++ +I L ++ F YP S +++
Sbjct: 286 AGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLT 343
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
I +G ALVG SG+GKST+++L+ F P GE+ ++GI+L++ + RK+I VSQ
Sbjct: 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQN 403
Query: 469 PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
P LF G+I++NI + DA+ EEI A + A +F+ K P G+DT++GE G LSGGQ
Sbjct: 404 PYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQA 462
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
QR+A+ARA+L +LLLDE T+ LDAE+E+++ +AL + +T +++ HRL +AD
Sbjct: 463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADAD 522
Query: 589 MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANK 626
I V+ G++VE+GTH +L E +G Y+ L++ QE +
Sbjct: 523 RIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEGRR 559
|
Length = 559 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 233 bits (595), Expect = 1e-65
Identities = 112/244 (45%), Positives = 167/244 (68%), Gaps = 3/244 (1%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
L +++G +E R + F + + Q S +G T A+VG +G+GK+T+I+L++R Y
Sbjct: 328 LPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY 385
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
DP G++LIDGI++ + +RK I V Q+ LF SI++NI G++ AT EE+ A
Sbjct: 386 DPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAA 445
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ A A FI K G DTLVGE G +LSGG++QR+AIARAILK+ IL+LDEATSALD E
Sbjct: 446 KAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+E V+ A+D + NRTT I+AHRLSTVRNAD++ + +G+++EKG+ +L++ +G +
Sbjct: 506 TEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFY 564
Query: 617 QLIR 620
+L+R
Sbjct: 565 KLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 233 bits (598), Expect = 6e-65
Identities = 138/431 (32%), Positives = 233/431 (54%), Gaps = 37/431 (8%)
Query: 196 FLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG-QGAYAKAASVVEQTIGSIR 254
+IA I G L+ V L +IPL+ + G ++ +S+++ + + + A +VE ++ +
Sbjct: 278 LVIAIIGGPLV-WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVE-SLSGLE 335
Query: 255 TVASFTGEKQAMSNYKKFLVTAYKSGVQ-EGLAAGI--------GLGMVMLIVFCSYALS 305
T+ + E + +++ + +SG++ L+ L V ++V Y +S
Sbjct: 336 TIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLIS 395
Query: 306 VWYGGKLILEEGYNGGQVVNVMVAVLTGSM--SLGEASPCLSAFGAGQA-AAFKMFETIN 362
G+L + GG + VM L+G LG+ + L+ + QA A + + +
Sbjct: 396 D---GELTM-----GGLIACVM---LSGRALAPLGQLAGLLTRYQ--QAKTALQSLDELM 442
Query: 363 RKPEIDAYDTKGKILD--DIRGDIELRDVYFSYPARPNEQI--FSGFSISISSGTTAALV 418
+ P + L ++G+IE R+V F+YP ++ S++I G A++
Sbjct: 443 QLP--VERPEGTRFLHRPRLQGEIEFRNVSFAYP---GQETPALDNVSLTIRPGEKVAII 497
Query: 419 GQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478
G+ GSGKST++ L+ Y P G VL+DG+++++ +R+ IG V Q+P LF G+++D
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557
Query: 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
NIA G A EEI A ELA +F+ + P G+D +GE G LSGGQ+Q +A+ARA+L
Sbjct: 558 NIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALL 617
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+DP ILLLDE TSA+D SE+ ++ L R + +T V+V HR S + D I V+ G+I
Sbjct: 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRI 677
Query: 599 VEKGTHSKLVE 609
V G +++E
Sbjct: 678 VADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 229 bits (585), Expect = 8e-65
Identities = 98/245 (40%), Positives = 135/245 (55%), Gaps = 4/245 (1%)
Query: 349 AGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSIS 408
G AAA +F ++ P A +E V +YP R S +
Sbjct: 289 DGVAAAEALFAVLDAAPRPLAGKAPVTAAPAPS--LEFSGVSVAYPGRRP--ALRPVSFT 344
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
+ G ALVG SG+GKST+++L+ F DP G + ++G+ L + R +I V Q
Sbjct: 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQH 404
Query: 469 PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
P LF G+I +NI + DA+ EIR A E A +F+ LPQG+DT +GE G LSGGQ
Sbjct: 405 PFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQA 464
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
QR+A+ARA L+D +LLLDE T+ LDAE+E V EAL + RT ++V HRL+ AD
Sbjct: 465 QRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALAD 524
Query: 589 MIAVI 593
I V+
Sbjct: 525 RIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-63
Identities = 81/126 (64%), Positives = 98/126 (77%), Gaps = 1/126 (0%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VSF+YPSRPDV + + L+L I GKTVALVG SG GKSTVVSLL+RFYDP +G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
LDGV+I+ L L+WLR Q+GLVSQEPVLF+ TI NI YGK DAT+ E++ A++ AN H
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGK-PDATDEEVEEAAKKANIH 119
Query: 1163 KFICSL 1168
FI SL
Sbjct: 120 DFIMSL 125
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 4e-63
Identities = 154/487 (31%), Positives = 242/487 (49%), Gaps = 32/487 (6%)
Query: 147 LRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLL 206
LR V+FF + TG++ R G + + + G + L + L L+ F W L
Sbjct: 220 LRLPVSFFRQYS-TGDLASRAMGISQIRRILSGSTLTTLLSGIFALLNLGLM-FYYSWKL 277
Query: 207 TLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSI---RTVASFTGEK 263
LV ++ + V+ ++ + R K + + Q I I R + E
Sbjct: 278 ALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGA---EN 334
Query: 264 QA----MSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYN 319
+A + + + E L +L V S AL L+ G +
Sbjct: 335 RAFARWAKLFSRQRKLELSAQRIENLLTVFN---AVLPVLTSAAL-FAAAISLLGGAGLS 390
Query: 320 GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDA---YDTKGKI 376
G + A + S ++ + S L + A ++E KP ++A D
Sbjct: 391 LGSFLAFNTAFGSFSGAVTQLSNTLISI----LAVIPLWERA--KPILEALPEVDEAKTD 444
Query: 377 LDDIRGDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
+ G IE+ V F Y RP+ I S+ I G A+VG SGSGKST++ L+ F
Sbjct: 445 PGKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGF 502
Query: 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495
P++G V DG +L +Q +R+++G+V Q L +GSI +NIA G T +E A
Sbjct: 503 ETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA-GGAPLTLDEAWEA 561
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+A A+ I +P G+ T++ E G LSGGQ+QR+ IARA+++ PRILL DEATSALD
Sbjct: 562 ARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++ +V E+L+R+ V R +++AHRLST+RNAD I V+ G++V++GT+ +L+ EG +
Sbjct: 622 RTQAIVSESLERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLF 678
Query: 616 SQLIRLQ 622
+QL R Q
Sbjct: 679 AQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 228 bits (582), Expect = 7e-63
Identities = 165/576 (28%), Positives = 284/576 (49%), Gaps = 42/576 (7%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
L++ I AI L + +I+T+ ++ + +++ + I I
Sbjct: 157 LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM----GTLGIISIGLIIAYIIQQIL 212
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
S++Q+ + G+R + I Y+K + ++FF TGE+V R + D I DA+
Sbjct: 213 SYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALA 270
Query: 180 EKV-GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGA 238
+ FL + + G + + LL L+ L SIP+ A+ + +K++ A
Sbjct: 271 STILSLFLDMWILVIVGLFLVR-QNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQA 329
Query: 239 YAKAASVVEQTIGSIRTVASFTGEKQA-------MSNY-KKFLVTAYKSGVQEGLAAGIG 290
A S + + + I T+ S T E + +Y K Q+ + A
Sbjct: 330 NAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTK 389
Query: 291 LGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVV--NVMVAVLTGSM-SLGEASPCLSAF 347
L + ++I+ W G L++ GQ++ N +++ + ++ P L
Sbjct: 390 LILNVVIL--------WTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKL--- 438
Query: 348 GAGQAAAFKMFETINRKPEIDAYDTKGKILD---DIRGDIELRDVYFSYPARPNEQIFSG 404
QAA +N +D+ K ++ GDI + DV +SY I S
Sbjct: 439 ---QAARVA-NNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSNILSD 492
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
S++I + +VG SGSGKST+ L+ F+ ++GE+L++G +LK+ +R+ I
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552
Query: 465 VSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
+ QEP +F+GSI +N+ G K++ + +EI A E+A I+ +P G T + E G+ +
Sbjct: 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583
SGGQKQRIA+ARA+L D ++L+LDE+TS LD +EK + L + ++T + VAHRLS
Sbjct: 613 SGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSV 671
Query: 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+ +D I V+ GKI+E+G+H +L+ D G Y+ LI
Sbjct: 672 AKQSDKIIVLDHGKIIEQGSHDELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 7e-63
Identities = 82/224 (36%), Positives = 144/224 (64%), Gaps = 6/224 (2%)
Query: 382 GDIELRDVYFSYPARPNEQ-IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
GDIE ++V Y RPN + S SI G +VG++GSGKS+++ + R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGKDDATTEEIRVATELA 499
G +LIDG+++ + L +R +I ++ Q+PVLF+G+I+ N+ +G+ + EE+ A E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERV 116
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+F++ LP G+DT+V E G LS GQ+Q + +ARA+L+ +IL+LDEAT+++D E++
Sbjct: 117 GLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
++Q+ + + T + +AHRL T+ ++D I V+ +G++VE +
Sbjct: 177 LIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 1e-61
Identities = 127/482 (26%), Positives = 235/482 (48%), Gaps = 43/482 (8%)
Query: 160 TGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219
+G+++ R+ D + + +L+++A + ++ + L+ SIPL +
Sbjct: 114 SGDLLNRLVADVDALDNL-------YLRVIAPAVVALVLIAVVTIGLSFF---SIPLALL 163
Query: 220 SGGVMAIM------ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKF- 272
G ++ ++ + + R GA+ Q ++R+ FT Q + F
Sbjct: 164 LGLILLLLLLIIPTLFYRAGRKFGAHLA------QGRAALRS--QFTDWVQGQAELLIFG 215
Query: 273 ----LVTAYKSGVQEGLAAGIGL----GMVMLIVFCSYALSVWYGGKLILEEGYNGGQVV 324
TA ++ L A G+ I+ L V + + G
Sbjct: 216 AEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQ 275
Query: 325 NVMVAVLTGSMSLGEASPCLS--AF---GAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379
L + EA L+ AF G A+A ++ + +++KPE+ +
Sbjct: 276 PGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVT---FPDEQTAT 332
Query: 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
+ELR+V F+YP + + F+++++ G A++G+SGSGKST++ L+ +DPQ
Sbjct: 333 TGQALELRNVSFTYPGQQT-KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ 391
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
G + ++G+ + Q +R+ I +++Q LF+G+++DN+ DA+ EE+ A +
Sbjct: 392 QGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQV 451
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
K ++ P G++T +GE G +LSGG+++R+A+ARA+L D + LLDE T LD +E+
Sbjct: 452 GLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
V L +T ++V HRL + D I V+ GKI+E+GTH++L+ + G Y +L
Sbjct: 512 QVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLY 570
Query: 620 RL 621
+L
Sbjct: 571 QL 572
|
Length = 573 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 217 bits (554), Expect = 4e-60
Identities = 95/269 (35%), Positives = 163/269 (60%), Gaps = 5/269 (1%)
Query: 352 AAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISS 411
A+A ++ E +KPE+ + T D + + L +V F+YP +P + G S+ I +
Sbjct: 309 ASARRINEITEQKPEVT-FPTTSTAAAD-QVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKA 365
Query: 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471
G AL+G++G GKST++ L+ R +DPQ GE+L++G + ++ +R+ I +VSQ L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531
F+ +++DN+ +A+ E + + K ++ +G++ +GE G QLSGG+++R+
Sbjct: 426 FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484
Query: 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591
IARA+L D +LLLDE T LDAE+E+ + E L N+T +++ HRL+ + D I
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC 544
Query: 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
V+ G+I+E+GTH +L+ +G Y QL +
Sbjct: 545 VMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-59
Identities = 82/216 (37%), Positives = 139/216 (64%), Gaps = 4/216 (1%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464
+ ++ +G ALVG SG+GK+++++ + F P G + I+GI L+E W RK +
Sbjct: 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESW-RKHLSW 427
Query: 465 VSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524
V Q P L G+++DN+ G DA+ E+++ A E A ++F+ LPQG+DT +G+ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584
GQ QR+A+ARA+L+ ++LLLDE T++LDA SE++V +AL+ +TT++V H+L +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
D I V+ G+IV++G +++L + G ++ L+
Sbjct: 548 AQWDQIWVMQDGQIVQQGDYAELSQAG-GLFATLLA 582
|
Length = 588 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 221 bits (563), Expect = 2e-58
Identities = 189/714 (26%), Positives = 327/714 (45%), Gaps = 105/714 (14%)
Query: 1 MNGESNSNEASASKSQEEVGKDSSMSGNEHDSE---------KGKQTEKTESVPFYKLFT 51
MNG S SAS + D + S N + + + + + ++F+
Sbjct: 763 MNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFS 822
Query: 52 FA-DSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFV 110
+ D AL I+ + GL P+ LL+ ++T D N +K S + +
Sbjct: 823 YKKDVTIIALSIL-----VAGGL-YPVFALLYAKYVSTLFDFANLEANSNKYS---LYIL 873
Query: 111 YLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNT-GEVVGRMSG 169
+ I I+ L+ + GE+ ++ + IL Q+++FFD + + G + ++
Sbjct: 874 VIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINR 933
Query: 170 DTVLIQDAMGEKVGKFLQLMATFLGGFLIAF----IKGWLLTLVMLSSIPLLAMSGGVMA 225
D L++ + + F + FL +++F I +LT + + A+ + A
Sbjct: 934 DVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTA 993
Query: 226 I--MISKMSSRGQGAYAKAAS---------VVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274
+ K ++ +A + ++++ ++ TV + E + +K +
Sbjct: 994 NKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAID 1053
Query: 275 TAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGS 334
+ K ++ L + G + + W+G LI V + M ++ T
Sbjct: 1054 YSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTI---LVDDFMKSLFTFL 1110
Query: 335 MSLGEASPCLSAFGAGQAAAF---KMFETINRKPEIDAYDTKG---KILDDIRGDIELRD 388
+ A +S G + A K + I RK ID D G K +DI+G IE+ D
Sbjct: 1111 FTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMD 1170
Query: 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI--- 445
V F Y +RPN I+ + S S T A+VG++GSGKSTV+SL+ RFYD + ++
Sbjct: 1171 VNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKN 1230
Query: 446 ----DGINLKEFQ----------------------------------------------- 454
D N +++Q
Sbjct: 1231 EHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYN 1290
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
L+ +R +VSQEP+LF SI +NI +GK+DAT E+++ A + A +FI+ LP DT
Sbjct: 1291 LKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDT 1350
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNR 572
VG +G LSGGQKQRIAIARA+L++P+ILLLDEATS+LD+ SEK++++ + I ++
Sbjct: 1351 NVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADK 1410
Query: 573 TTVIVAHRLSTVRNADMIAVIHR----GKIVE-KGTHSKLVEDPEGAYSQLIRL 621
T + +AHR+++++ +D I V + G V+ GTH +L+ +G Y + ++L
Sbjct: 1411 TIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 6e-58
Identities = 152/527 (28%), Positives = 246/527 (46%), Gaps = 81/527 (15%)
Query: 135 ATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG 194
A +R + + + RQ F+ TG+++ R + D + A GE V L L+ + +
Sbjct: 68 AVELREDFYRQLSRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGV---LTLVDSLVM 123
Query: 195 GFLIAFIK----GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR-------GQGAYAKAA 243
G + + W LTL+ L +P VMAIMI + + Q A++
Sbjct: 124 GCAVLIVMSTQISWQLTLLALLPMP-------VMAIMIKRYGDQLHERFKLAQAAFSSLN 176
Query: 244 SVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAG----------IGLGM 293
++++ SIR + +F G + S F A +G + A I +GM
Sbjct: 177 DRTQESLTSIRMIKAF-GLEDRQSA--LFAADAEDTGKKNMRVARIDARFDPTIYIAIGM 233
Query: 294 VMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGA---- 349
L L++ G + V+ GS++LG+ + + G
Sbjct: 234 ANL-------LAIGGGSWM-----------------VVNGSLTLGQLTSFVMYLGLMIWP 269
Query: 350 -------------GQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPAR 396
G AA ++ + P + + + + RG++++ F+YP
Sbjct: 270 MLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYPQT 326
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456
+ + ++ G + G +GSGKST++SLI+R +D G++ I L + QL
Sbjct: 327 -DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLD 385
Query: 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
R ++ +VSQ P LF+ ++ +NIA G+ DAT +EI LA+ I +LPQG DT V
Sbjct: 386 SWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEV 445
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
GE G LSGGQKQRI+IARA+L + IL+LD+A SA+D +E + L + RT +I
Sbjct: 446 GERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVII 505
Query: 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
AHRLS + A I V+ G I ++G H +L + G Y + R Q+
Sbjct: 506 SAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRYQQ 551
|
Length = 569 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 7e-57
Identities = 97/254 (38%), Positives = 156/254 (61%), Gaps = 8/254 (3%)
Query: 378 DDIR----GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433
+D R G I++ +V F+Y R + + ++S+ S ALVG +GSGKST+ SL+
Sbjct: 331 NDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM 388
Query: 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493
+Y GE+ +DG L +R+ + +V Q+PV+ + N+ G+D + E++
Sbjct: 389 GYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD-ISEEQVW 447
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A E A+ LP G+ T +GE G LS GQKQ +A+AR +++ P+IL+LDEAT+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 554 DAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEG 613
D+ +E+ +Q+AL + + T V++AHRLST+ AD I V+HRG+ VE+GTH +L+ +G
Sbjct: 508 DSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QG 566
Query: 614 AYSQLIRLQEANKE 627
Y Q+ +LQ A +E
Sbjct: 567 RYWQMYQLQLAGEE 580
|
Length = 592 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 3e-55
Identities = 115/407 (28%), Positives = 194/407 (47%), Gaps = 10/407 (2%)
Query: 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIG 823
A+ L LL ++Y A G +L + F ++ + +S+F + S G I
Sbjct: 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF--EKRSVGEII 254
Query: 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883
+R+ + +R + ++ ++ ++ A L + F SW+L LI+L +PL +
Sbjct: 255 SRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIF 313
Query: 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQG 943
++ + + E + + I TV + AE + + + + G +
Sbjct: 314 QPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373
Query: 944 -MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSS 1001
+ S + GA LV +G+ T + F L I I++ S
Sbjct: 374 KLALILNTIKSLLQQL-SSVLILWFGAILVLEGELTLGQLV-AFNMLAGYFISPITRLSQ 431
Query: 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVF 1061
+D +AK A + I+D + D++ L ++GEIE +VSF+Y +
Sbjct: 432 LWTDFQQAKVALERLGDILDTPPE-QEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVL- 489
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
DL+L+I G+ VA+VG SGSGKST++ LL Y P G I LDGV++ + L LR+Q+
Sbjct: 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549
Query: 1122 GLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
G V Q+P LF+ +IR NIA G +AT+ EI A+++A AH+FI +L
Sbjct: 550 GYVLQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENL 595
|
Length = 709 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 1e-54
Identities = 132/406 (32%), Positives = 203/406 (50%), Gaps = 40/406 (9%)
Query: 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841
SY + K++ +R F ++ M VS+FD+ S+G + +R++ D+ V + AL
Sbjct: 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDK--QSTGTLLSRITYDSEQVASSSSGAL 143
Query: 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEA 901
+V+ ++ I+ F SWQL+LI++V+ P++ ++ K + S + + +
Sbjct: 144 ITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQV 203
Query: 902 SQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM--VSGGG-------FGA 952
+ A + + V F ++V K M+ +QGM VS A
Sbjct: 204 TTSAEQMLKGHKEVLIF-GGQEVETKRFDKVSNRMR---QQGMKMVSASSISDPIIQLIA 259
Query: 953 SFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFF-------SLTMTAIGISQSSSFSSD 1005
S L F YAASF + + G T + VF SLT + ++
Sbjct: 260 SLALAFVLYAASFPSVMDTLTAG--TITVVFSSMIALMRPLKSLT----------NVNAQ 307
Query: 1006 SNKAKSAAASIFAIIDRESKIDPSDESGTI-LEDVKGEIELHHVSFKYPSRPDVQVFRDL 1064
+ +A ++FAI+D E + D G +E KG+IE +V+F YP + +V R++
Sbjct: 308 FQRGMAACQTLFAILDLEQEKD----EGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNI 362
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124
N KI AGKTVALVG SGSGKST+ +LL RFYD D G I LDG +++ L LR Q+ LV
Sbjct: 363 NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALV 422
Query: 1125 SQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
SQ LFNDTI NIAY + + +I+ A+ MA A FI +
Sbjct: 423 SQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN 468
|
Length = 582 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 2e-49
Identities = 93/302 (30%), Positives = 156/302 (51%), Gaps = 13/302 (4%)
Query: 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT-GSMSLGEA---- 340
A +G + +L + ++W GG G++ V +AVL ++ EA
Sbjct: 236 ATALGAALTLLAAGLAVLGALWAGG-----PAVADGRLAPVTLAVLVLLPLAAFEAFAAL 290
Query: 341 SPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKG-KILDDIRGDIELRDVYFSYPARPNE 399
+AAA ++ E ++ + + + +ELRD+ YP
Sbjct: 291 PAAAQQLTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAP 348
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
+ G S+ + G A++G SGSGKST+++ + DP GEV +DG+ + +R
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVR 408
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519
+++ + +Q+ LF ++++N+ + DAT EE+ A E A ++ LP G+DT++GE
Sbjct: 409 RRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEG 468
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
G +LSGG++QR+A+ARA+L D ILLLDE T LDAE+ + E L + RT V++ H
Sbjct: 469 GARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITH 528
Query: 580 RL 581
L
Sbjct: 529 HL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 3e-49
Identities = 66/128 (51%), Positives = 91/128 (71%), Gaps = 2/128 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E +V+F+YP V RD++L I AG+TVALVG SGSGKST+V+L+ RFYD D+G I
Sbjct: 1 VEFKNVTFRYPGDGP-PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG +++ L LR+Q+GLVSQ+ LFNDT+ NIAYG+ AT E++ A+ ANAH
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR-PGATREEVEEAARAANAH 118
Query: 1163 KFICSLQQ 1170
+FI L +
Sbjct: 119 EFIMELPE 126
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 172 bits (439), Expect = 1e-48
Identities = 89/241 (36%), Positives = 125/241 (51%), Gaps = 31/241 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
IELRD+ Y + S+ I G AL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 439 QAGEVLIDG--INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GEVL+DG I + + +R+++G+V Q+P F GSI DN+AYG K +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 491 EIRVATELANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
E RV L AA + D+L H LSGGQ+QR+ +ARA+ +P +LLLD
Sbjct: 118 E-RVEEALRKAALWDEVKDRL----------HALGLSGGQQQRLCLARALANEPEVLLLD 166
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSK 606
E TSALD S ++E + + T VIV H + R AD A + G++VE G +
Sbjct: 167 EPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226
Query: 607 L 607
+
Sbjct: 227 I 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 2e-48
Identities = 90/279 (32%), Positives = 148/279 (53%), Gaps = 12/279 (4%)
Query: 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121
I+ I A L PL+ F D + ++ +S +++ + + +G
Sbjct: 5 ILLLILAGATALVFPLLLGRFLDSLIDGNGDERSS-------LISLAILLIAVGVLQGLL 57
Query: 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFD---NETNTGEVVGRMSGDTVLIQDAM 178
LQ GER RIR + +LRQ + + + GE+ R++ D I+D +
Sbjct: 58 LQG--SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGL 115
Query: 179 GEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGA 238
G+K+G F Q +AT +GGF++ F GW LTLV+L+ +PLL + V+A + K++ + Q A
Sbjct: 116 GDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKA 175
Query: 239 YAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIV 298
YAKA SV E+++ IRTV +F E+ + Y K L A K+G+++ + AG+ G+ LI
Sbjct: 176 YAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLIS 235
Query: 299 FCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSL 337
+ SYAL++W+G L++ G + G V + L S L
Sbjct: 236 YLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 2e-46
Identities = 108/383 (28%), Positives = 183/383 (47%), Gaps = 42/383 (10%)
Query: 801 FEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLI---I 857
FE++I + ++W + S A+ L AL G L + ++++T A ++ +
Sbjct: 96 FERIIQLPLAWHSQ-RGSGRALHTLLRG----TDALFGLWLEFMREHLATLVALVVLLPL 150
Query: 858 AFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVAS 917
A +W+L+L+++V+ + + M+ K A + Y + +DA+G++ V S
Sbjct: 151 ALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQS 210
Query: 918 FC---AEEKVMQLYKKKC-EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE 973
+ AE + ++ A M + S AS + A GA LV+
Sbjct: 211 YNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAI----LVLGAALVQ 266
Query: 974 DGKATFSDVFKVFFSLTMTAIG-ISQSSSFSSDSNKAKSAAA----------SIFAIIDR 1022
G+ +V F IG + Q +F N+ AA ++ + D
Sbjct: 267 KGQLRVGEVV-AFVGFATLLIGRLDQVVAFI---NQVFMAAPKLEEFFEVEDAVPDVRDP 322
Query: 1023 ESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082
ID L VKG +E VSF Y + Q D++ + + G+TVA+VG +G+
Sbjct: 323 PGAID--------LGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTGA 372
Query: 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
GKST+++LLQR +DP +G I +DG +I+ + LR+ + +V Q+ LFN +I NI G
Sbjct: 373 GKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVG 432
Query: 1143 KGGDATEAEIQAASEMANAHKFI 1165
+ DAT+ E++AA+E A AH FI
Sbjct: 433 R-PDATDEEMRAAAERAQAHDFI 454
|
Length = 588 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 5e-44
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 44/216 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ +V F YP + S SI G + A++G SGSGKST+ LI P +G V
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+DG ++ ++ + +G + Q+ LF+GSI +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
LSGGQ+QR+ +ARA+ +PRIL+LDE S LD E E+ + +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 564 ALDRI-MVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
A+ + T +++AHR T+ +AD I V+ G++
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 1e-43
Identities = 83/224 (37%), Positives = 128/224 (57%), Gaps = 2/224 (0%)
Query: 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
G + + +V P + G S S+ +G A++G SGSGKST+ LI + P +
Sbjct: 314 EGHLSVENVTIV-PPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTS 372
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN 500
G V +DG +LK++ + K IG + Q+ LF G++ +NIA ++A E+I A +LA
Sbjct: 373 GSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAG 432
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+ I +LP G DT++G G LSGGQ+QRIA+ARA+ DP++++LDE S LD E E+
Sbjct: 433 VHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492
Query: 561 VQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
+ A+ + T V++ HR S + D I V+ G+I G
Sbjct: 493 LANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGE 536
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 2e-43
Identities = 60/219 (27%), Positives = 112/219 (51%), Gaps = 41/219 (18%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + +V FSYP + +Q+ S+ + G AL+G+SGSGKST++ L+ PQ GE+
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+DG+ + + + + I +++Q P LF ++++N+
Sbjct: 60 TLDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
G + SGG++QR+A+AR +L+D I+LLDE T LD +E+ +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 564 ALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602
+ ++ ++T + + H L+ + + D I + GKI+ +G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 4e-43
Identities = 87/247 (35%), Positives = 137/247 (55%), Gaps = 32/247 (12%)
Query: 384 IELRDVYFSYPARPNEQI--FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
IEL +V ++ + S+ I G ++G SG+GKST++ LI P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 442 EVLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEI 492
V +DG + L E +L+ +R+KIG++ Q L + ++ +N+A+ G A ++
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ- 120
Query: 493 RVAT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
RVA EL + D+ P QLSGGQKQR+AIARA+ +P+ILL DEAT
Sbjct: 121 RVAELLELVGLSDKADRYP-----------AQLSGGQKQRVAIARALANNPKILLCDEAT 169
Query: 551 SALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605
SALD E+ + + E L I NR T V++ H + V+ D +AV+ +G++VE+GT S
Sbjct: 170 SALDPETTQSILELLKDI--NRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVS 227
Query: 606 KLVEDPE 612
++ +P+
Sbjct: 228 EVFANPK 234
|
Length = 339 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 2e-42
Identities = 50/97 (51%), Positives = 69/97 (71%), Gaps = 1/97 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VSF YP RP V +D++L I+ G+ VA+VG SGSGKST++ LL R YDP +G I
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+DGV+++ L L+ LR+ + V Q+P LF+ TIR NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI 96
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-42
Identities = 76/223 (34%), Positives = 116/223 (52%), Gaps = 22/223 (9%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
EL+++ FSYP S++I G +VG +GSGKST++ L+ P +GEVL
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVAT 496
+DG +L + L+ +R+K+GLV Q P F ++++ +A+G ++ E + A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL D+ P LSGGQKQR+AIA + DP ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRDRSPF-----------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPA 168
Query: 557 SEKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGK 597
+ + E L ++ T+I+ H L + AD + V+ GK
Sbjct: 169 GRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 3e-42
Identities = 71/223 (31%), Positives = 125/223 (56%), Gaps = 22/223 (9%)
Query: 382 GDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
G+IE+ ++ Y P+ + S + +G +VG++G+GKST+I + RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN 500
G++ IDGI++ L+ +R + ++ Q+P LF+G+I+ N+ D+ + EEI A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDP-FDEYSDEEIYGALR--- 118
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
V E G LS GQ+Q + +ARA+LK PR+L+LDEAT+++D ++ +
Sbjct: 119 ---------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDAL 163
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
+Q+ + N T + +AHRL T+ + D I V+ G++ E
Sbjct: 164 IQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 3e-42
Identities = 84/228 (36%), Positives = 130/228 (57%), Gaps = 10/228 (4%)
Query: 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
L +G + + + + P + + I G S ++ +G ++G SGSGKST+ L+
Sbjct: 327 PLPAPQGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI 385
Query: 436 YDPQAGEVLIDGINLKEFQLQWIR----KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491
+ P +G V +DG +L+ QW R + IG + Q+ LF G+I +NIA ++A E+
Sbjct: 386 WPPTSGSVRLDGADLR----QWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ A LA + I +LPQG DT +GE G LSGGQ+QRIA+ARA+ DP +++LDE S
Sbjct: 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 552 ALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTVRNADMIAVIHRGKI 598
LD+E E + A+ T V++AHR S + + D I V+ G+I
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 151 bits (385), Expect = 2e-41
Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V+F Y P V +D++ I AGK VA+VG SGSGKST++ LL RFYD +G I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG +I+++ L LR+ +G+V Q+ VLFNDTI NI YG+ DAT+ E+ A++ A H
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGR-PDATDEEVIEAAKAAQIH 117
Query: 1163 KFICSL 1168
I
Sbjct: 118 DKIMRF 123
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 2e-41
Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 28/234 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IELR + S+ R + G + + G A++G SGSGKST++ LI P +GEV
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRV 494
LIDG + L E +L +R+++G++ Q LF ++ +N+A+ + V
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 495 AT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
E D P +LSGG K+R+A+ARA+ DP +LL DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYP-----------AELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 553 LDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
LD + V+ + + + + T+++V H L T AD IAV++ GKIV +GT
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 31/246 (12%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
IEL++V + + S+S+ G ++G+SG+GKST+I I P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIR 493
VL+DG + L +L+ R++IG++ Q L + ++ +N+A G A EE R
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEE-R 120
Query: 494 VAT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
V EL D P QLSGGQKQR+ IARA+ +P++LL DEATS
Sbjct: 121 VLELLELVGLEDKADAYP-----------AQLSGGQKQRVGIARALANNPKVLLCDEATS 169
Query: 552 ALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606
ALD E+ + + L I NR T V++ H + V+ D +AV+ +G++VE+GT +
Sbjct: 170 ALDPETTQSILALLRDI--NRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEE 227
Query: 607 LVEDPE 612
+ +P+
Sbjct: 228 VFANPQ 233
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 149 bits (380), Expect = 7e-41
Identities = 74/240 (30%), Positives = 118/240 (49%), Gaps = 34/240 (14%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+E++++ S+P + S SI G T LVG+SGSGKST+ I P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 443 VLIDG---INLKEFQLQWIRKKIGLVSQEPV-----LFTGSIKDNIA-----YGKDDATT 489
++ DG + L + RK+I +V Q+P+ T I + IA +GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMT--IGEQIAEPLRIHGKLSKKE 119
Query: 490 EEIRVATELA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
L + +++ P +LSGGQ+QR+AIARA+ +P++L+
Sbjct: 120 ARKEAVLLLLVGVGLPEEVLNRYPH-----------ELSGGQRQRVAIARALALNPKLLI 168
Query: 546 LDEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
DE TSALD + + + L ++ + T + + H L V AD +AV++ GKIVE+G
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 1e-40
Identities = 70/275 (25%), Positives = 134/275 (48%), Gaps = 3/275 (1%)
Query: 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPA 780
+L + + G ++ LL+ +++ + + A++ +A+G LL
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDA 840
Y G ++ +R+ +++ + +S+FD +S G + +RL+ D + +R +GD
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDT--NSVGELTSRLTNDVSKIRDGLGDK 118
Query: 841 LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEE 900
L Q+++T G I+ F W+L L++L +LPL+ + K ++ + + Y +
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178
Query: 901 ASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAF 960
A VA +++ IRTV +F EE ++ Y K E K GI++ + +G FG + + +
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLS 238
Query: 961 YAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG 995
YA + + GA LV G + VF F SL + G
Sbjct: 239 YALALWFGAYLVISGGLSVGTVF-AFLSLGLQLSG 272
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 149 bits (380), Expect = 2e-40
Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 32/254 (12%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
IE+RD+ Y ++ ++ I AL+G SG GKST++ + R
Sbjct: 1 ETMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 437 DP-----QAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-----K 484
D GEVL+DG N+ + + +R+++G+V Q+P F SI DN+AYG
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 485 DDATTEEIRVATELANAA-----KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
D +EI V + L AA K D+L + LSGGQ+QR+ IARA+
Sbjct: 118 KDKELDEI-VESSLKKAALWDEVK--DRL--------HKSALGLSGGQQQRLCIARALAV 166
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKI 598
P +LL+DE TSALD S ++E + + T VIV H + R +D A + G++
Sbjct: 167 KPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226
Query: 599 VEKGTHSKLVEDPE 612
VE G K+ +P+
Sbjct: 227 VEFGPTDKIFTNPK 240
|
Length = 253 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 7e-40
Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 3/128 (2%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
GEIE +V+F Y V +D+N I+ G+TVA+VG +G+GK+T+++LL RFYDP G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
I +DG++I+ + K LR +G+V Q+ LF+ TI NI G+ +AT+ E+ A++ A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGR-PNATDEEVIEAAKEAG 117
Query: 1161 AHKFICSL 1168
AH FI L
Sbjct: 118 AHDFIMKL 125
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 8e-40
Identities = 58/133 (43%), Positives = 86/133 (64%), Gaps = 1/133 (0%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
+KG ++ +V+F YP+RPD V +D++ + G+ ALVG SGSGKSTVV+LL+ FY P
Sbjct: 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP 66
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
G + LDG I + + K+L ++ LV QEPVLF +++ NIAYG + E ++ A++
Sbjct: 67 QGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFE-CVKEAAQ 125
Query: 1158 MANAHKFICSLQQ 1170
A+AH FI L
Sbjct: 126 KAHAHSFISELAS 138
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-39
Identities = 75/229 (32%), Positives = 122/229 (53%), Gaps = 26/229 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL+ + +Y + + S+++ G AL+G SG GK+T++ LI P +GE+
Sbjct: 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRV--AT 496
LIDG ++ + R+ IG+V Q+ LF ++ +NIA+G RV
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL +++ P +LSGGQ+QR+A+ARA+ ++P +LLLDE SALDA+
Sbjct: 116 ELVGLEGLLNRYP-----------HELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 557 SEKVVQEALDRIMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKIVEKG 602
+ ++E L + TT+ V H + AD IAV++ G+IV+ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-39
Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 25/241 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++ F YP + S+ I G L+G +GSGKST++ L+ P +GEV
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 444 LIDGINLKEFQLQW-IRKKIGLVSQEPV--LFTGSIKDNIAYG------KDDATTEEIRV 494
L+DG++ + +R+K+GLV Q P LF +++D +A+G + E +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A EL + +D+ P LSGGQKQR+AIA + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 555 AESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + + E L ++ +T +IV H L V AD + V+ GKI+ G +++ D
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
Query: 612 E 612
E
Sbjct: 231 E 231
|
Length = 235 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (365), Expect = 1e-38
Identities = 82/261 (31%), Positives = 136/261 (52%), Gaps = 26/261 (9%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+IE ++V +S ++I S+ G +VG SG+GKST+I LI R DP G
Sbjct: 3 EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+LIDG+++K + +R+KIG+V Q+P LF G++KDNI YG + + V L+
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + + LSGG+ QR++IAR + +P +LLLDE TSALD S ++++
Sbjct: 120 LNKEYATRDVK--------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIE 171
Query: 563 EALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
E + ++ +N T + + H + R D A +++G +VE +P+ ++L
Sbjct: 172 ELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKLF 231
Query: 620 RLQEANKESEQTIDGQRKSEI 640
I G+ K E+
Sbjct: 232 ------------IQGKLKEEV 240
|
Length = 241 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-38
Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 48/220 (21%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL++V Y + + + S++I +G AL+G SGSGKST++ I +P +G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 444 LIDGINL--KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN 500
LIDG +L E +L +R++IG+V Q+ LF ++ +NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
LSGGQ+QR+A+ARA+ DP +LLLDE TSALD + +
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 561 VQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597
V+ L + + T V+V H L AD + V+ GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 1e-38
Identities = 73/224 (32%), Positives = 114/224 (50%), Gaps = 30/224 (13%)
Query: 384 IELRDVYFSYPARPNEQ--IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I + D F++ + E ++ + G A+VG GSGKS+++S + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSAL-------LG 53
Query: 442 EV-LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATEL 498
E+ + G + I VSQEP + G+I++NI +GK D+ E++ A L
Sbjct: 54 ELEKLSG------SVSVP-GSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACAL 106
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES- 557
++ LP G T +GE G LSGGQKQRI++ARA+ D I LLD+ SA+DA
Sbjct: 107 E---PDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVG 163
Query: 558 ----EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
E + L + N+T ++V H+L + +AD I V+ G+
Sbjct: 164 RHIFENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-38
Identities = 76/230 (33%), Positives = 110/230 (47%), Gaps = 29/230 (12%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+E+R+V +Y S+S+ G ALVG SG GKST++ +I P +GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYG---KDDATTEEIRVATEL 498
VL+DG + G V Q+ L ++ DN+A G + E A EL
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 499 ANA---AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ F + P QLSGG +QR+A+ARA+ DP +LLLDE SALDA
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 556 ESEKVVQEALDRIMV--NRTTVIVAHRLS-TVRNADMIAVI--HRGKIVE 600
+ + +QE L I +T ++V H + V AD + V+ G+IV
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 152 bits (386), Expect = 5e-38
Identities = 115/414 (27%), Positives = 196/414 (47%), Gaps = 28/414 (6%)
Query: 765 LIYLALGAG-----SFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSS 819
L LA+G F+L +SYF VAG K + + FE+V+ + + P S
Sbjct: 186 LWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRME--ARPA-SV 242
Query: 820 GAIGARLSADAASVRALVGDA-LARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGV 878
G+ +L + SVR A L ++ L+IA L + LV +PLI +
Sbjct: 243 GSFANQLR-EFESVRDFFTSATLTALIDLPFALLFLLVIAIIG-GPLVWVPLVAIPLILL 300
Query: 879 SGYTQMKFMKG-FSADAKMKYEEASQ---VANDAVGSIRTVASFCAEEKVMQLYKKKCEA 934
G ++ S A+ E++Q V +++ + T+ + AE + + +++ A
Sbjct: 301 PGL----LLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAA 356
Query: 935 PMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994
++G++ +S + F+ A G L+ DG+ T + L+ A+
Sbjct: 357 LARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVM-LSGRAL 415
Query: 995 G-ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL--EDVKGEIELHHVSFK 1051
+ Q + + +AK+A S+ ++ + E L ++GEIE +VSF
Sbjct: 416 APLGQLAGLLTRYQQAKTALQSLDELMQLPVE---RPEGTRFLHRPRLQGEIEFRNVSFA 472
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
YP + +++L IR G+ VA++G GSGKST++ LL Y P G + LDGV+I++
Sbjct: 473 YPGQETP-ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI 1165
+ LR+ +G V Q+P LF T+R NIA G A + EI A+E+A +F+
Sbjct: 532 IDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPY-ADDEEILRAAELAGVTEFV 584
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 5e-38
Identities = 80/255 (31%), Positives = 130/255 (50%), Gaps = 38/255 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+R+V S+ + S+ I G L+G SG GK+T++ +I F P +GE+
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG-----KDDATTEEIRV--A 495
L+DG ++ + ++ IG+V Q LF ++++N+A+G K + RV A
Sbjct: 63 LLDGEDI--TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
EL F D+ P QLSGGQ+QR+A+ARA++ +P++LLLDE SALDA
Sbjct: 121 LELVGLEGFADRKP-----------HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 556 ESEKVVQEALDRIMVNR--TTVIVAHRLS---TVRNADMIAVIHRGKIVEKGTHSKLVED 610
+ + +++ L + T V V H + +D IAV++ G+I + GT
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAM--SDRIAVMNDGRIEQVGT------- 220
Query: 611 PEGAYSQLIRLQEAN 625
PE Y + A+
Sbjct: 221 PEEIYERPATRFVAD 235
|
Length = 352 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 5e-38
Identities = 76/236 (32%), Positives = 126/236 (53%), Gaps = 27/236 (11%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQLQWIRKK 461
S + G T LVG+SGSGKST+ ++ P +G ++ DG ++L +L+ +R++
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR 368
Query: 462 IGLVSQEPVLFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVG- 517
I +V Q+P ++ D +A E +R+ + A + + LVG
Sbjct: 369 IQMVFQDPYSSLNPRMTVGDILA--------EPLRIHGGGSGAER--RARVAELLELVGL 418
Query: 518 --EHGT----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
E +LSGGQ+QR+AIARA+ +P++L+LDE SALD + V L +
Sbjct: 419 PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478
Query: 572 R--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624
T + ++H L+ VR AD +AV++ G+IVE+G K+ E+P+ Y++ +L A
Sbjct: 479 LGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTR--KLLAA 532
|
Length = 539 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 6e-38
Identities = 71/266 (26%), Positives = 124/266 (46%), Gaps = 24/266 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+R++ Y ++ G S + G L+G +G+GK+T++ ++ P +GE+
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY------GKDDATTEEIRVAT 496
L+ G ++ + + +R++IG V QEP L+ ++++N+ + + E I
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL +K + LSGG KQR++IA A+L DP +L+LDE TS LD E
Sbjct: 122 ELFGLEDKANKKVRT-----------LSGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 557 SEKVVQEALDRI--MVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEG 613
S + + E L + T ++ H L D + +++ GKI+ +GT +L E G
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 614 AYSQLIRLQEANKESEQTIDGQRKSE 639
+ + K E
Sbjct: 231 KGVIELEPERLELAELLEGLKLVKGE 256
|
Length = 293 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 1e-37
Identities = 89/281 (31%), Positives = 158/281 (56%), Gaps = 26/281 (9%)
Query: 382 GDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
G I+ DV Y RP + G S IS +VG++G+GKS++++ + R + +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGK-DDATTEEIRVATEL 498
G +LIDG ++ +F L +RK +G++ Q PVLF+G+++ N+ + + +DA E + E
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWE---SLER 1350
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A+ I + G+D V E G S GQ+Q +++ARA+L+ +IL+LDEAT+A+D ++
Sbjct: 1351 AHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTD 1410
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
++Q+ + + T +I+AHRL+T+ + D I V+ G++VE T L+ + A+S++
Sbjct: 1411 ALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKM 1470
Query: 619 IR---------LQ---------EANKESEQTIDGQRKSEIS 641
++ L+ +E + +DGQRK S
Sbjct: 1471 VQSTGAANAQYLRSLVFGGDEDRLAREESKALDGQRKWLAS 1511
|
Length = 1622 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 2e-37
Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 26/233 (11%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
IEL++V Y + + ++ I +G A+VG SGSGKST+++L+ P +GE
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 443 VLIDGIN---LKEFQLQWIR-KKIGLVSQE-PVLFTGSIKDNI---AYGKDDATTEEIRV 494
VLI+G + L E +L +R KKIG V Q +L ++ +N+ + R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRA 121
Query: 495 ATELAN----AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
A EL + + K P ++LSGGQ+QR+AIARA++ +P+I+L DE T
Sbjct: 122 AEELLEVLGLEDRLLKKKP-----------SELSGGQQQRVAIARALINNPKIILADEPT 170
Query: 551 SALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601
LD+++ K V E L + +T ++V H + AD + + GKI E+
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-37
Identities = 75/244 (30%), Positives = 132/244 (54%), Gaps = 35/244 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE++++ S+ ++++ G S+S+ G ++G SGSGKST++ + +P +G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 444 LIDGIN-LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG--------KDDATTEEIR 493
+DG + + + +R+K+G+V Q+ LF ++ +N+ K +A E
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEA--REK- 116
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A + ++K+ G+ + QLSGGQ+QR+AIARA+ DP+++L DE TSAL
Sbjct: 117 -------ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSAL 167
Query: 554 DAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
D E V E LD +M + T +IV H + R AD + + +GKI+E+G +
Sbjct: 168 DPEL---VGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEF 223
Query: 608 VEDP 611
++P
Sbjct: 224 FDNP 227
|
Length = 240 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-37
Identities = 80/243 (32%), Positives = 125/243 (51%), Gaps = 23/243 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
IE+ ++ Y ++ ++ I AL+G SG GKST++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 439 QAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
G+VL DG ++ K+ + +R+++G+V Q+P F SI DNIAYG KD +
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
EI V L AA L + + + LSGGQ+QR+ IARA+ +P +LLLDE T
Sbjct: 119 EI-VEESLKKAA-----LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPT 172
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVE 609
SALD + ++E + + T VIV H + R +D A + G++VE G ++
Sbjct: 173 SALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFT 232
Query: 610 DPE 612
+P+
Sbjct: 233 NPK 235
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 4e-37
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 28/234 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ ++ F Y +P I S SI G ++G +GSGKST++ + P++GEV
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGK----------DDATTEEI 492
L+DG ++ + + KK+ V Q P G ++ + + G+ E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A EL D+ +D LSGG++QR+ IARA+ ++ ILLLDE TS
Sbjct: 120 EEALELLGLEHLADR---PVDE--------LSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 553 LDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
LD + V E L + T V+V H L+ R AD + ++ GKIV +GT
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 7e-37
Identities = 111/399 (27%), Positives = 196/399 (49%), Gaps = 45/399 (11%)
Query: 768 LALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLS 827
+ +G F+LS S+ V K+++ ++ + V + + + D G++L+
Sbjct: 104 VLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNP------GSKLT 157
Query: 828 ADA----ASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883
+D V A +G I S I + + +L L I + PLI + G
Sbjct: 158 SDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVIC 217
Query: 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQ-------LYKK-KCEAP 935
K +K + + + +A+ IRTV S+C E+ +++ LY K +A
Sbjct: 218 NKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKAN 277
Query: 936 MKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVED------------GKATFSDVF 983
+ GM++G + A YA F+ G R++ G + S +
Sbjct: 278 FMESLHIGMING--------FILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILL 329
Query: 984 KVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEI 1043
V S+ M I + + + K+ A S++ II+R+ ++ +D+ G L+D+K +I
Sbjct: 330 GVLISMFMLTIILPNITEYM----KSLEATNSLYEIINRKPLVENNDD-GKKLKDIK-KI 383
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ +V F Y +R DV++++DLN + GKT A VGESG GKST++ L++R YDP G I
Sbjct: 384 QFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII 443
Query: 1104 L-DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
+ D ++ + LKW R ++G+VSQ+P+LF+++I+ NI Y
Sbjct: 444 INDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKY 482
|
Length = 1466 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-36
Identities = 70/244 (28%), Positives = 126/244 (51%), Gaps = 34/244 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL++V S+ + ++ ++ I G L+G SG GKST++ +I +P +GE+
Sbjct: 4 LELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG------KDDATTEEIRVAT 496
LIDG ++ + + ++ I +V Q L+ ++ +NIA+G + ++
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+L +++ P QLSGGQ+QR+A+ARA+++ P++ LLDE S LDA+
Sbjct: 119 KLLGLEHLLNRKP-----------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 557 SE----KVVQEALDRIMVNRTTVIVAHRL---STVRNADMIAVIHRGKIVEKGTHSKLVE 609
+++ +R+ TT+ V H T+ AD I V++ G+I + GT +L E
Sbjct: 168 LRVLMRSEIKKLHERL--GTTTIYVTHDQVEAMTL--ADRIVVMNDGRIQQVGTPLELYE 223
Query: 610 DPEG 613
P
Sbjct: 224 RPAN 227
|
Length = 338 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 138 bits (348), Expect = 3e-36
Identities = 72/212 (33%), Positives = 127/212 (59%), Gaps = 1/212 (0%)
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQE 468
I G + G++GSGKS++ R D G+++IDGI++ + L +R ++ ++ Q+
Sbjct: 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQD 103
Query: 469 PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528
P+LF+GSI+ N+ T + + A E+A + LP G+D +V E G S GQ+
Sbjct: 104 PILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQR 162
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNAD 588
Q +ARA ++ IL++DEAT+++D +E ++Q+ + +RT V +AHR+ST+ +AD
Sbjct: 163 QLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDAD 222
Query: 589 MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
++ V+ RG +VE T L+ +G ++ L+R
Sbjct: 223 LVLVLSRGILVECDTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 3e-36
Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 30/243 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V Y + +++I G L+G SGSGK+T + +I R +P +GE+
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
LIDG ++ + +R+KIG V Q+ LF ++ +NIA G D ++ A E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKR--ADE 116
Query: 498 LA-----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
L + +++ D+ P +LSGGQ+QR+ +ARA+ DP ILL+DE A
Sbjct: 117 LLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGA 165
Query: 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVE 609
LD + K +QE + + + +T V V H + ++ AD IAV+ G+IV+ T +++
Sbjct: 166 LDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225
Query: 610 DPE 612
+P
Sbjct: 226 NPA 228
|
Length = 309 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 136 bits (344), Expect = 7e-36
Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 9/232 (3%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V Y + + ++ I+ G L+G SGSGK+T + +I R +P +GE+
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
IDG +++E +R+KIG V Q+ LF ++++NIA + ++
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ P + +LSGGQ+QR+ +ARA+ DP +LL+DE ALD + +Q
Sbjct: 119 ALVGLDPA---EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 563 EALDRI--MVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
E R+ + +T V V H + R AD IA++ G+IV+ GT +++ P
Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-35
Identities = 75/226 (33%), Positives = 115/226 (50%), Gaps = 19/226 (8%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKST---VISLIERFYDPQ 439
IEL+++ +Y + Q G S+SI G A+VG SGSGKST ++ ++R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 440 AGEVLIDGIN---LKEFQLQWIR-KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRV 494
+GEV +DG + L E +L R + IG V Q L + +N+ +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP---LLLAGVPK 114
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A + ++++ G+ + + ++LSGGQ+QR+AIARA+ DP+I+L DE T LD
Sbjct: 115 KERRERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 555 AESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+E+ K V E L + T V+V H AD I + GKI
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-35
Identities = 113/476 (23%), Positives = 184/476 (38%), Gaps = 53/476 (11%)
Query: 718 IPVILAGTIA-AMANGVILPIYGLLISSVIETFF---KPPHELKKDSRFWALIYLALGAG 773
LA + +++ L++ V++ +P EL +
Sbjct: 1 ARRALALLALLGVLGALLIIAQAWLLARVVDGLISAGEPLAEL----LPALGALALVLLL 56
Query: 774 SFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASV 833
LL Q A A + ++R E V + W G + V
Sbjct: 57 RALLGWLQERAAARAAAAVKSQLRERLLEAVAALGPRWL-----QGRPSGELATLALEGV 111
Query: 834 RALVGDALARIVQNISTAAAGLIIA---FTASWQLALIILVMLPLIGVSGYTQMKFMK-- 888
AL G + Q + L I F W LI+L+ PLI + FM
Sbjct: 112 EALDGYFARYLPQLVLAVIVPLAILAAVFPQDWISGLILLLTAPLIPI-------FMILI 164
Query: 889 GFSADAKMK--YEEASQVAN---DAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQG 943
G++A A + + S+++ D + + T+ F + ++ E + +R
Sbjct: 165 GWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVL 224
Query: 944 MVSGGGFGASFFL-LFAFYAASF---YAGARLVEDGKATFSDVFKVF-----FSLTMTAI 994
++ F +S L LFA + + Y G RL+ G + V F L
Sbjct: 225 RIA---FLSSAVLELFATLSVALVAVYIGFRLL-AGDLDLATGLFVLLLAPEFYLP---- 276
Query: 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054
+ Q + +AA ++FA++D + + +E VS YP
Sbjct: 277 -LRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGKAP--VTAAPAPSLEFSGVSVAYPG 333
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
R R ++ + G+ VALVG SG+GKST+++LL F DP G I ++GV +
Sbjct: 334 RR--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA 391
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
R Q+ V Q P LF TI NI + DA++AEI+ A E A +F+ +L Q
Sbjct: 392 DSWRDQIAWVPQHPFLFAGTIAENIRLAR-PDASDAEIREALERAGLDEFVAALPQ 446
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 3e-35
Identities = 83/234 (35%), Positives = 128/234 (54%), Gaps = 27/234 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+R V S+ R I G + + G A++G SGSGKST++ LI P GE+
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA 499
LIDG + L E +L IRK++G++ Q+ LF+ ++ +N+A+ + T + EL
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 500 NAAKFIDKLPQGIDTLVGEHG-------TQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
+ KL LVG G ++LSGG ++R+A+ARAI DP +L LDE TS
Sbjct: 126 -----LMKL-----ELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
LD S V+ E + + + T ++V H L ++ AD +AV+ GK++ +GT
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 4e-35
Identities = 77/231 (33%), Positives = 140/231 (60%), Gaps = 6/231 (2%)
Query: 381 RGDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
RG +E R+ Y R + + + +++I G +VG++G+GKS++ + R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGKDDATTEEIRVATEL 498
GE++IDG+N+ + L +R KI ++ Q+PVLF+GS++ N+ + + + EE+ A EL
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQ--YSDEEVWWALEL 1397
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A+ F+ LP +D E G LS GQ+Q + +ARA+L+ +IL+LDEAT+A+D E++
Sbjct: 1398 AHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
++Q + + T + +AHRL+T+ + + V+ +G++ E G S L++
Sbjct: 1458 NLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 4e-35
Identities = 74/257 (28%), Positives = 125/257 (48%), Gaps = 32/257 (12%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ +R++ Y + S+ I G T +VG+SGSGKST+ L+ P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 443 VLIDGINLKEFQ-LQWIRKKIGLVSQEPVLFTGS------IKDNIA-----YGKDDATTE 490
+L+DG L + + + + +V Q+P S + ++ +G +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDP---YSSLNPRRTVGRILSEPLRPHGLSKSQQR 120
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+ ++ F+D+ P +LSGGQ+QRIAIARA++ +P++L+LDE T
Sbjct: 121 IAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPT 169
Query: 551 SALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
SALD + + L + R T + ++H L+ V + D IAV+ G+IVE G +L
Sbjct: 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEEL 229
Query: 608 VEDPEGAYSQLIRLQEA 624
+ P Y++ L EA
Sbjct: 230 LSHPSHPYTRE--LLEA 244
|
Length = 252 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 5e-35
Identities = 57/218 (26%), Positives = 107/218 (49%), Gaps = 48/218 (22%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+R++ Y + S+++ G L+G +G+GK+T+I +I P +GE+
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
+ G ++K+ + ++++IG + +EP L+ ++++N+
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL---------------------- 94
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+LSGG KQR+A+A+A+L DP +L+LDE TS LD ES +
Sbjct: 95 -------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 563 EALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKI 598
E L + T++++ H L D +A+++ G+I
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 8e-35
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 44/221 (19%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E+ ++ Y R + S+SI +G ++G +G+GKST++ + P +GE+L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504
+DG +L + + +KI V Q A EL A
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
D+ + LSGG++QR+ +ARA+ ++P ILLLDE TS LD + + E
Sbjct: 91 ADR---PFNE--------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 565 LDRI--MVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKG 602
L R+ +T V+V H L+ R AD + ++ G+IV +G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 2e-34
Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 28/205 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ V S+ + ++S+ G A++G SG GKST++ LI P +GEV
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVAT 496
L+DG + IG V QE L ++ DN+A G E +
Sbjct: 61 LLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL A F DK P QLSGG +QR+AIARA+ P++LLLDE ALDA
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 557 SEKVVQEALDRIM--VNRTTVIVAH 579
+ + +Q+ L R+ +T ++V H
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 2e-34
Identities = 77/239 (32%), Positives = 134/239 (56%), Gaps = 22/239 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ +V FSYP N S I+ G A++G +GSGKST+ ++ PQ+GE+
Sbjct: 8 IKVENVSFSYPNSEN-NALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGS-IKDNIAYGKDDA--TTEEIR-VATEL 498
IDGI + + L+ IRKKIG++ Q P F G+ ++D+IA+G ++ ++++ + +L
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 499 ANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
A ++DK PQ LSGGQKQR+AIA + +P I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 556 ESEKVVQEALDRIMVNRT-TVI-VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ ++ +++ + + R T+I + H + AD + V GK++ +G +++ + E
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNNKE 234
|
Length = 271 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 9e-34
Identities = 73/239 (30%), Positives = 122/239 (51%), Gaps = 28/239 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + + F YP S S+ G A+VG +GSGKST+ L+ P+AG +
Sbjct: 6 IRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGS-IKDNIAYGKD------DATTEEIRVA 495
+ G+ L E + +R+++G+V Q P F G+ ++D++A+G + + E + A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
F+++ P +LSGGQKQR+AIA + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 556 ESEKVVQEALD--RIMVN--RTTVI-VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
+E L+ R + TV+ + H L AD + V+++G+I+E+GT ++ +
Sbjct: 174 RGR---REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 1e-33
Identities = 64/215 (29%), Positives = 95/215 (44%), Gaps = 60/215 (27%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E+ ++ F Y R S+++ +G ALVG +GSGKST++ I P +GE+L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504
IDG ++ + L+ + + I Y
Sbjct: 58 IDGKDIAKLPLEEL------------------RRRIGY---------------------- 77
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
+PQ LSGGQ+QR+A+ARA+L +P +LLLDE TS LD S + + E
Sbjct: 78 ---VPQ------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 565 LDRIMV-NRTTVIVAHRLSTVRNA-DMIAVIHRGK 597
L + RT +IV H A D + V+ GK
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 1e-33
Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 38/233 (16%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+++++ S+ + + G +++ G ++G SGSGKST++ I +P +G +
Sbjct: 1 IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY------GKDDATTEEIRV 494
+IDG + + + +R+K+G+V Q+ LF ++ +NI G A EE
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-- 115
Query: 495 ATEL---ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A EL A D P QLSGGQ+QR+AIARA+ +P+++L DE TS
Sbjct: 116 ALELLEKVGLADKADAYPA-----------QLSGGQQQRVAIARALAMNPKVMLFDEPTS 164
Query: 552 ALDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKI 598
ALD E +V E LD +M + T V+V H + R AD + + G+I
Sbjct: 165 ALDPE---LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 1e-33
Identities = 74/224 (33%), Positives = 118/224 (52%), Gaps = 25/224 (11%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIR-KK 461
S+ + G ++G SGSGKST++ I R +P +G+VLIDG + +L+ +R KK
Sbjct: 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103
Query: 462 IGLVSQEPVLFTG-SIKDNIAYG---KDDATTEEIRVATE---LANAAKFIDKLPQGIDT 514
I +V Q L ++ +N+A+G + E A E L + K P
Sbjct: 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPD---- 159
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNR 572
+LSGG +QR+ +ARA+ DP ILL+DEA SALD + +Q+ L R+ + +
Sbjct: 160 -------ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQK 212
Query: 573 TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
T V + H L +R D IA++ G++V+ GT +++ +P Y
Sbjct: 213 TIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY 256
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-33
Identities = 80/283 (28%), Positives = 134/283 (47%), Gaps = 45/283 (15%)
Query: 384 IELRD--VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-- 439
+E+++ V F A + G S + G +VG+SGSGKS + I
Sbjct: 2 LEVKNLSVSFPTDAGVV-KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 440 ---AGEVLIDGINL---KEFQLQWIR-KKIGLVSQEPV-----LFTGSIKDNIA-----Y 482
GE+L DG +L E +L+ IR K+I ++ Q+P+ + T I D IA +
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMT--IGDQIAEVLRLH 118
Query: 483 GKDDATTEEIRVATELA------NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536
GK + E A EL + + + P H +LSGG +QR+ IA A
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H--ELSGGMRQRVMIAMA 167
Query: 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT--VIVAHRLSTVRN-ADMIAVI 593
+ +P++L+ DE T+ALD + + + L + + T +++ H L V AD +AV+
Sbjct: 168 LALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVM 227
Query: 594 HRGKIVEKGTHSKLVEDPEGAYSQ-LIRLQEANKESEQTIDGQ 635
+ G+IVE+G ++ ++P+ Y++ L+ E I G
Sbjct: 228 YAGRIVEEGPVEEIFKNPKHPYTRGLLNSLPRLGERLPPIPGS 270
|
Length = 316 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-33
Identities = 66/210 (31%), Positives = 115/210 (54%), Gaps = 11/210 (5%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S+ + G ++G +GSGKS ++ I F P +G++L++G ++ L ++ I V
Sbjct: 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISYV 76
Query: 466 SQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524
Q LF ++ NIAYG ++ + ++ A+ + GID L+ LS
Sbjct: 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-----GIDHLLNRKPETLS 131
Query: 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVI-VAHRLS 582
GG++QR+AIARA++ +P+ILLLDE SALD +++ ++E L +I TV+ V H
Sbjct: 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE 191
Query: 583 TVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
AD +A++ GK+++ G ++ + P
Sbjct: 192 EAWALADKVAIMLNGKLIQVGKPEEVFKKP 221
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-33
Identities = 76/243 (31%), Positives = 143/243 (58%), Gaps = 8/243 (3%)
Query: 381 RGDIELRDVYFSY-PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
RG I+ DV+ Y P P + G S +S +VG++G+GKS++++ + R + +
Sbjct: 1232 RGSIKFEDVHLRYRPGLP--PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE 1289
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA--YGKDDATTEEIRVATE 497
G ++ID ++ +F L +R+ + ++ Q PVLF+G+++ NI +DA E A E
Sbjct: 1290 KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWE---ALE 1346
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A+ ID+ P G+D V E G S GQ+Q +++ARA+L+ +IL+LDEAT+++D +
Sbjct: 1347 RAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRT 1406
Query: 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ ++Q + + T +++AHRL+T+ + D I V+ G+++E + +L+ A+ +
Sbjct: 1407 DSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFR 1466
Query: 618 LIR 620
++
Sbjct: 1467 MVH 1469
|
Length = 1495 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 2e-33
Identities = 84/237 (35%), Positives = 126/237 (53%), Gaps = 31/237 (13%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
IEL+++ +P + S+ I +G ++G SG+GKST+I I P +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATEL 498
VL+DG + L E +L+ R++IG++ Q L + ++ DN+A EL
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVAL------------PLEL 109
Query: 499 ANAAK-FIDKLPQGIDTLVG--EHG----TQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A K I + LVG + QLSGGQKQR+AIARA+ +P++LL DEATS
Sbjct: 110 AGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169
Query: 552 ALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
ALD + + + E L I NR T V++ H + V+ D +AVI G++VE+GT
Sbjct: 170 ALDPATTRSILELLKDI--NRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (343), Expect = 4e-33
Identities = 107/446 (23%), Positives = 185/446 (41%), Gaps = 30/446 (6%)
Query: 732 GVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNK 791
G+ + L++ ++ + +L + ++ L L+ + A K
Sbjct: 13 GIAIIAQAALLADILTKLIE--GQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAK 70
Query: 792 LIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTA 851
+ +R + +K+ + ++ + +G+ + L ++ +
Sbjct: 71 VRASLRQLVLDKLAKLGPAFIAQ--KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVP 128
Query: 852 AAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGS 911
LI F +W ALI+L+ PLI + K S S D +
Sbjct: 129 LLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRG 188
Query: 912 IRTVASFCAEEKVMQLYKKKCE----APMKTGIRQGMVSGGGFGASFFLLFAFYAAS--- 964
+ T+ +F E + +K E A M +R +S +L F S
Sbjct: 189 LETLRAFGRTEATEERIRKDSEDFRKATMSV-LRIAFLSS-------AVLEFFAYLSIAL 240
Query: 965 --FYAGARLVEDGKATFSDVFKVFFSLTMTA---IGISQSSSFSSDSNKAKSAAASIFAI 1019
Y G RL+ +G T F F L + + SF + ++AA +F +
Sbjct: 241 VAVYIGFRLLGEGDLTL---FAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTL 297
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
++ S E + + EI L ++SF+YP DLNL I+AG+ ALVG
Sbjct: 298 LESPVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGA 355
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
SG+GKST+++LL F P G I ++G++++ L + R+Q+ VSQ P LF TIR NI
Sbjct: 356 SGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENI 415
Query: 1140 AYGKGGDATEAEIQAASEMANAHKFI 1165
+ DA++ EI AA + A +F+
Sbjct: 416 LLAR-PDASDEEIIAALDQAGLLEFV 440
|
Length = 559 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 9e-33
Identities = 75/211 (35%), Positives = 122/211 (57%), Gaps = 20/211 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQLQWIRKKIGLVSQE 468
A++G SG GK+T++ I R D G++ G ++ + + RKK+G+V Q+
Sbjct: 33 AIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQK 92
Query: 469 PVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
P F SI DN+A+G K + I V L AA + D++ ++ + GT+
Sbjct: 93 PTPFPMSIYDNVAFGPRIHGVKSKHKLDRI-VEESLKKAALW-DEVKSELN----KPGTR 146
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGGQ+QR+ IARA+ +P ++LLDE TSALD + + +++ L+ + N T VIV H +
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIG 206
Query: 583 -TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+R AD IA ++RG+++E G ++VE P+
Sbjct: 207 QAIRIADYIAFMYRGELIEYGPTREIVERPK 237
|
Length = 250 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 2e-32
Identities = 55/127 (43%), Positives = 81/127 (63%), Gaps = 4/127 (3%)
Query: 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I HV F+Y +PD + +++L+I+ G+ V +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161
+ +DG ++ WLR+Q+G+V QE VLFN +IR NIA G + E + A+++A A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSME-RVIEAAKLAGA 117
Query: 1162 HKFICSL 1168
H FI L
Sbjct: 118 HDFISEL 124
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 2e-32
Identities = 129/478 (26%), Positives = 217/478 (45%), Gaps = 44/478 (9%)
Query: 704 EVPTRRLAYLN--KPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSR 761
+V R L+YLN K + +I+ I A + PI L +I+ K D
Sbjct: 5 QVYVRALSYLNVHKNRVLLIVIANITLAAITIAEPI---LFGRIIDAISS-----KSD-- 54
Query: 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSM----CFEKVIHMEVSWFDEPEH 817
L LAL AG + + A ++L R+ F ++I M +SW +
Sbjct: 55 --VLPTLALWAGFGVFNTIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQ-RG 111
Query: 818 SSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLII---AFTASWQLALIILVMLP 874
+S A+ L A L G L + Q+++T A ++ AF W+L+++++V+
Sbjct: 112 TSNALHTLLRA----TETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVLGI 167
Query: 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF---CAEEKVMQLYKKK 931
L + M+ K A + Y + +D++ ++ V S+ AE ++ +
Sbjct: 168 LYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNN 227
Query: 932 C-EAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLT 990
A + SG AS + G LV G+ + +V F
Sbjct: 228 LLSAQYPVLDWWALASGLNRMASTISMMCI----LVIGTVLVIKGELSVGEVI-AFIGFA 282
Query: 991 MTAIG-ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTI--LEDVKGEIELHH 1047
IG + Q S F + A A + D E + +E L +VKG +E H
Sbjct: 283 NLLIGRLDQMSGFI---TQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRH 339
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107
++F++ + Q D++ + +AG+TVA+VG +G+GK+T+++LLQR YDP G I +DG+
Sbjct: 340 ITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397
Query: 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFI 1165
+I + + LR+ + V Q+ LFN +IR NI G+ AT+ E+ A++ A AH FI
Sbjct: 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFI 454
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 132 bits (333), Expect = 3e-32
Identities = 105/348 (30%), Positives = 173/348 (49%), Gaps = 30/348 (8%)
Query: 833 VRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSA 892
+R ++ + L +V+ A +I+ W AL LV + L + + F
Sbjct: 56 LRWILFNILPTLVEISLVA---VILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRR 112
Query: 893 DAKMKYEEASQVANDAVGSIRTVASFCAEE-------KVMQLYKKKCEAPMKTGIRQGMV 945
+A+ A D++ + TV F EE ++ Y+K A +K + ++
Sbjct: 113 LMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEK---AAIKVHVSLLVL 169
Query: 946 SGGGFGASFFLLFAFY-AASFYAGARLVEDGKATFSDVFKV---FFSLTMTAIGISQSSS 1001
+ FG + +F+ A VE+G+ T D+ V F L++ + S
Sbjct: 170 N---FGQT--AIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYR 224
Query: 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKY-PSRPDVQV 1060
+ +A + +F ++D E+++ + ++ + G + +VSF Y P RP +
Sbjct: 225 ---EIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP---I 278
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
++ I GKTVA+VGESG+GKST++ LL RFYD ++G IT+DG +I+ + + LR+
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338
Query: 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
+G+V Q+ VLFNDTI NI YG DAT E+ AA+E A H FI SL
Sbjct: 339 IGIVPQDTVLFNDTIAYNIKYG-RPDATAEEVGAAAEAAQIHDFIQSL 385
|
Length = 497 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 3e-32
Identities = 82/252 (32%), Positives = 124/252 (49%), Gaps = 27/252 (10%)
Query: 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
++ I++R++ F Y ++ I+ A +G SG GKST++ R
Sbjct: 6 MVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM 62
Query: 436 YD--PQ---AGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG----- 483
Y+ P+ GE+L+DG N+ + + +R K+G+V Q+P F SI DNIA+G
Sbjct: 63 YELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE 122
Query: 484 KDDATTEEIRVATELANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
K + RV L AA + DKL Q G LSGGQ+QR+ IAR I
Sbjct: 123 KLSRAEMDERVEWALTKAALWNEVKDKLHQS--------GYSLSGGQQQRLCIARGIAIR 174
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIV 599
P +LLLDE SALD S ++E + + + T VIV H + R +D A ++ G+++
Sbjct: 175 PEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELI 234
Query: 600 EKGTHSKLVEDP 611
E G + P
Sbjct: 235 EFGNTDTIFTKP 246
|
Length = 260 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G IE +VSF YP++ + +++L IRAG+ VA++G GSGKST++ LL Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPAL-DNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMAN 1160
+ LDG +I++L LR+ +G V Q+ LF T+R NI G A + I A+E+A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLG-APLADDERILRAAELAG 118
Query: 1161 AHKFI 1165
F+
Sbjct: 119 VTDFV 123
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-31
Identities = 90/248 (36%), Positives = 125/248 (50%), Gaps = 23/248 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA- 440
I+ RDV F Y + G S+ I + A +G SG GKST + L R D P
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 441 --GEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GE+ IDG N+ K Q+ +RK +G+V Q P F SI +N+AYG KD+A
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+ RV L AA L + + E LSGGQ+QR+ IARA+ P +LL+DE
Sbjct: 121 Q-RVEETLKGAA-----LWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVE 609
SALD S V+E + + + T VIV H + R +D A + G++VE K+
Sbjct: 175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234
Query: 610 DPEGAYSQ 617
+PE +Q
Sbjct: 235 NPEKEATQ 242
|
Length = 250 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-31
Identities = 83/241 (34%), Positives = 124/241 (51%), Gaps = 20/241 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
IE RD+ Y +EQ S+ I A++G SG GKST + I R D
Sbjct: 40 IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96
Query: 439 QAGEVLIDGINLKEFQLQ--WIRKKIGLVSQEPVLFTGSIKDNIAYG---KDDATTEEIR 493
GE+ G N+ + + +R++IG+V Q+P F SI DN+AYG + + R
Sbjct: 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
V L AA + D++ +D G LSGGQ+QR+ IARAI DP ++L+DE SAL
Sbjct: 157 VEESLRRAALW-DEVKDQLD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASAL 211
Query: 554 DAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAV-IHRGKIVEKGTHSKLVEDP 611
D + +++ ++ + T VIV H + R +D AV + G++VE K+ E+P
Sbjct: 212 DPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENP 271
Query: 612 E 612
E
Sbjct: 272 E 272
|
Length = 285 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 84/244 (34%), Positives = 125/244 (51%), Gaps = 23/244 (9%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---- 437
G I ++D+ Y + Q ++ I AL+G SG GKST + + R D
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 438 -PQAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDAT 488
GEVL+DG ++ + + +RK++G+V Q+P F SI DN+AYG KD
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
+EI V L AA + D++ + + LSGGQ+QR+ IARA+ +P +LL+DE
Sbjct: 119 LDEI-VEKSLKGAALW-DEVKDRLK----KSALGLSGGQQQRLCIARALAVEPEVLLMDE 172
Query: 549 ATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKL 607
TSALD S ++E + + + T VIV H + R +D A G+IVE G L
Sbjct: 173 PTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDL 232
Query: 608 VEDP 611
+P
Sbjct: 233 FTNP 236
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 4e-31
Identities = 68/248 (27%), Positives = 115/248 (46%), Gaps = 57/248 (22%)
Query: 384 IELRDVYFSYPARPNEQ------IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437
+E++++ +P G S SI G T LVG+SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 438 PQAGEVLIDGINL----KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493
P +GE+L +G ++ KE + + + + + V
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPE------------------------ 100
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
+F+ + P H +LSGGQ+QRI IARA+ +P++++ DE SAL
Sbjct: 101 ---------EFLYRYP---------H--ELSGGQRQRIGIARALALNPKLIVADEPVSAL 140
Query: 554 DAESE-KVVQEALD-RIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
D + +++ D + + T + ++H LS VR +D IAV++ GKIVE G ++ +
Sbjct: 141 DVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
Query: 611 PEGAYSQL 618
P Y++
Sbjct: 201 PLHPYTKA 208
|
Length = 268 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 6e-31
Identities = 106/418 (25%), Positives = 181/418 (43%), Gaps = 29/418 (6%)
Query: 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIG 823
AL LA+ L ++Y FA +++ + + + ++ + + +F+ G
Sbjct: 182 ALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTV 239
Query: 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPL-----IGV 878
AR+ L G AL ++ + L + F S L +++ L + V
Sbjct: 240 ARVRELEQIRNFLTGSALTVVLDLLFVVVF-LAVMFFYSPTLTGVVIGSLVCYALLSVFV 298
Query: 879 SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKT 938
+ + F A A+ ++V I T+ + E + + ++ A +
Sbjct: 299 GPILRKRVEDKFERSA-----AATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAA 353
Query: 939 GIR-QGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGIS 997
R + + G F A + GA LV G + + + M A ++
Sbjct: 354 SFRVTNLGNIAGQAIELIQKLTF-AILLWFGAHLVIGGALSPGQLV----AFNMLAGRVT 408
Query: 998 QS----SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYP 1053
Q + D + A + I++ S +P L +++G I ++ F+Y
Sbjct: 409 QPVLRLAQLWQDFQQTGIALERLGDILN--SPTEPRSAGLAALPELRGAITFENIRFRY- 465
Query: 1054 SRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
PD +V +LNL I+ G+ + +VG SGSGKST+ LLQR Y P G + +DGV++
Sbjct: 466 -APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA 524
Query: 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
WLR+QMG+V QE VLF+ +IR NIA G A + A+++A AH FI L Q
Sbjct: 525 DPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG-APFEHVIHAAKLAGAHDFISELPQ 581
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 8e-31
Identities = 75/237 (31%), Positives = 123/237 (51%), Gaps = 23/237 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ D++F Y + + G S+SI G+ AL+G +G+GKST++ + Y PQ G V
Sbjct: 5 IEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVA 495
+ G + +W+R K+GLV Q+P +F+ ++ D++A+G D + A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ F DK P LS GQK+R+AIA + DP +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 556 ESEKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
++ + E LDR+ TVIVA H + AD + V+ G+++ +G S L ++
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDE 228
|
Length = 274 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 9e-31
Identities = 47/130 (36%), Positives = 83/130 (63%), Gaps = 7/130 (5%)
Query: 1041 GEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
G+IE +VS +Y RP++ V ++++ I+ G+ V +VG +GSGKS+++ L R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA-YGKGGDATEAEIQAASEM 1158
G I +DGV+I K+ L LR ++ ++ Q+PVLF+ TIR+N+ +G+ ++ E+ A E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE---YSDEELWQALER 115
Query: 1159 ANAHKFICSL 1168
+F+ SL
Sbjct: 116 VGLKEFVESL 125
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 9e-31
Identities = 81/246 (32%), Positives = 119/246 (48%), Gaps = 29/246 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
+E+R++ Y +Q S+ I A +G SG GKST++ R D
Sbjct: 26 LEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 439 QAGEVLIDG--INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GE+ +DG I K+ + +R+++G+V Q P F SI +N+ YG + +
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 491 EIRVATELANAA---KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
E V L AA + D+L E+ LSGGQ+QR+ IARAI +P +LLLD
Sbjct: 143 EA-VERSLRGAALWDEVKDRL--------HENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSK 606
E TSALD S ++E + + T VIV H + R +D A ++ GK+VE G
Sbjct: 194 EPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253
Query: 607 LVEDPE 612
L P
Sbjct: 254 LFTSPA 259
|
Length = 272 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 30/241 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IEL +V Y G S+ I G L+G SG GK+T++ LI F P +GE+
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVAT 496
L+DG ++ L ++ + V Q LF ++ +NIA+G E + A
Sbjct: 58 LLDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+L + ++ P QLSGGQ+QR+AIARA++ +P++LLLDE ALD +
Sbjct: 116 DLVQLEGYANRKPS-----------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
Query: 557 SEKVVQEALDRI--MVNRTTVIVAHRLS---TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
K +Q L R+ + T V V H T+ +D IAV+++GKI + GT ++ E+P
Sbjct: 165 LRKDMQLELKRLQKELGITFVFVTHDQEEALTM--SDRIAVMNKGKIQQIGTPEEIYEEP 222
Query: 612 E 612
Sbjct: 223 A 223
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 80/233 (34%), Positives = 110/233 (47%), Gaps = 27/233 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDG--INL 450
E I G + AL+G SGSGKST + + R D G++L G IN
Sbjct: 33 KEAIK-GIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA-- 502
KE + +RK IG+V Q P F SI +NI + KD +EI V T L AA
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEI-VETSLKQAALW 150
Query: 503 -KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+ D L + LSGGQ+QR+ IARAI P ILL+DE SALD S +
Sbjct: 151 DQVKDDL--------HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL 202
Query: 562 QEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEG 613
+E + + N T +IV H + R +D A + G ++E + +P+
Sbjct: 203 EETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKL 255
|
Length = 267 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 73/222 (32%), Positives = 122/222 (54%), Gaps = 15/222 (6%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
Q ++ + +G+ AL+G SGSGKST++ +I P +G + ++G + +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--D 71
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ--GIDTLV 516
+KIG V Q LF +++DNIA+G EIR + A+ +++L + ++ L
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGL------EIRKHPKAKIKAR-VEELLELVQLEGLG 124
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTT 574
+ QLSGGQ+QR+A+ARA+ +P++LLLDE ALDA+ K ++ L ++ V+ TT
Sbjct: 125 DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT 184
Query: 575 VIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
V V H AD I V+ GKI + G+ ++ + P +
Sbjct: 185 VFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 2e-30
Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 16/196 (8%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
+ ++ FSY + +I S+ + +G AL G++G+GK+T+ ++ +G +L
Sbjct: 1 RIENISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
++G +K + RK IG V Q+ LFT S+++ + G + + T L
Sbjct: 59 LNGKPIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVL---- 111
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
L + L H LSGGQKQR+AIA A+L +L+ DE TS LD ++ + V
Sbjct: 112 ---KDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 563 EALDRIMVNRTTVIVA 578
E + + VIV
Sbjct: 167 ELIRELAAQGKAVIVI 182
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-30
Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 30/247 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 440
+ RDV Y + +F + I T A +G SG GKST + + R D
Sbjct: 20 MRARDVSVFYGE--KQALF-DVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR 76
Query: 441 --GEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYG-------KDDATT 489
G++ +DG ++ + +L + R ++G+V Q+P F SI +N+AYG + A
Sbjct: 77 VTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136
Query: 490 EEIRVATELANAAKF---IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
+EI V T L A + D+L E GT LSGGQ+QR+ IARAI P ++L+
Sbjct: 137 DEI-VETSLRKAGLWEEVKDRL--------HEPGTGLSGGQQQRLCIARAIAVSPEVILM 187
Query: 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHS 605
DE SALD + V+E +D + N T VIV H + R + A H G +VE G
Sbjct: 188 DEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTE 247
Query: 606 KLVEDPE 612
K+ +P+
Sbjct: 248 KMFTNPD 254
|
Length = 267 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-30
Identities = 70/224 (31%), Positives = 119/224 (53%), Gaps = 25/224 (11%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQWI-RKK 461
++I+ G ++G SGSGKST + ++ R +P AG++ IDG N+ + +L+ + RKK
Sbjct: 13 DLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKK 72
Query: 462 IGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDT 514
IG+V Q+ LF +I N + G + E+ +L ++ + P
Sbjct: 73 IGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPD---- 128
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNR 572
+LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L ++ + +
Sbjct: 129 -------ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 573 TTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
T V + H L +R D I ++ G+IV+ GT +++ +P Y
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 126 bits (319), Expect = 4e-30
Identities = 83/361 (22%), Positives = 135/361 (37%), Gaps = 41/361 (11%)
Query: 838 GDALARIVQNIST------------AAAGLIIAFTA------SWQLAL----IILVMLPL 875
GD L R+V ++ A ++IA S LAL I+L++L +
Sbjct: 115 GDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLI 174
Query: 876 IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAP 935
I Y + + F A D V + F AE+ + +
Sbjct: 175 IPTLFY---RAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASW 231
Query: 936 MKTGIRQGMVSG-GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVF-KVFFSLTMTA 993
+K +Q +G + A V G +
Sbjct: 232 LKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAA-QVGAGALAQPGAALALLVIFAALE 290
Query: 994 IGISQSSSFSSDSNKAKS----AAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVS 1049
+F + A AS + D + +EL +VS
Sbjct: 291 -------AFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELRNVS 343
Query: 1050 FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
F YP + + ++ NL + G+ VA++G SGSGKST++ LL +DP G ITL+GVEI
Sbjct: 344 FTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEI 402
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQ 1169
L + LR+ + +++Q LF+ T+R N+ DA++ E+ AA + K + S
Sbjct: 403 ASLDEQALRETISVLTQRVHLFSGTLRDNLRLAN-PDASDEELWAALQQVGLEKLLESAP 461
Query: 1170 Q 1170
Sbjct: 462 D 462
|
Length = 573 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 6e-30
Identities = 74/245 (30%), Positives = 130/245 (53%), Gaps = 28/245 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ ++ +YP ++ S+SI+ G AL+G SG+GKST++ + +P +G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 444 LIDGI---NLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT---------- 489
LIDG LK L+ +R++IG++ Q+ L S+ +N+ G+ +
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 490 -EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
EE + A ++++ G+ + QLSGGQ+QR+AIARA+++ P+++L DE
Sbjct: 119 KEEKQRALAA------LERV--GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 549 ATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605
++LD S + V + L RI T ++ H++ R AD I + G+IV G +
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230
Query: 606 KLVED 610
+L ++
Sbjct: 231 ELTDE 235
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 6e-30
Identities = 74/249 (29%), Positives = 125/249 (50%), Gaps = 36/249 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE++++ +YP Q ++ I+ G A++G SG+GKST++ + DP +GE+
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 444 LIDG---INLKEFQLQWIRKKIGLVSQEPVLFTGSIKD-----NIAYGKDDATT------ 489
L +G LK +L+ +R+ IG++ Q+ L + N+ G+ T+
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNL----VPRLSVLENVLLGRLGYTSTWRSLF 117
Query: 490 -----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544
E+ A + +DK Q T LSGGQ+QR+AIARA+++ P+I+
Sbjct: 118 GLFSKEDKAQALDALERVGILDKAYQRAST--------LSGGQQQRVAIARALVQQPKII 169
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601
L DE ++LD ES K V + L I T ++ H++ + AD I + G+IV
Sbjct: 170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229
Query: 602 GTHSKLVED 610
G S+L ++
Sbjct: 230 GPASELTDE 238
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 7e-30
Identities = 76/230 (33%), Positives = 120/230 (52%), Gaps = 21/230 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + +V + A S+ I SG AL+G SG+GKST++ +I P AG +
Sbjct: 3 IRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 444 LIDGINLKEFQLQWIRK-KIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRV-AT 496
++G L + +R K+G V Q LF ++ DNIA+G K+ + EIR
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL + ++ L + QLSGGQ+QR+A+ARA+ +P++LLLDE ALDA+
Sbjct: 120 ELLRLVQ--------LEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 171
Query: 557 SEKVVQEALDRIM--VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
K ++ L ++ + TTV V H + AD + V+++G+I + G
Sbjct: 172 VRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 1e-29
Identities = 81/230 (35%), Positives = 117/230 (50%), Gaps = 27/230 (11%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQL 455
+Q ++ I AL+G SG GKST + R D A G V I+G ++K +
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYG---------KDDATTEEIRVATELANAAKF-- 504
+RK +G+V Q+P +F SI +NI+Y KD+ EE V L F
Sbjct: 75 VALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDE---EEALVVDCLQKVGLFEE 131
Query: 505 -IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
DKL Q + LSGGQ+QR+ IARA+ P++LLLDE TSALD S V++E
Sbjct: 132 VKDKLKQ--------NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEE 183
Query: 564 ALDRIMVNRTTVIVAHRLST-VRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
L + N + ++V H + R AD A H G+++E G + E+P+
Sbjct: 184 LLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPK 233
|
Length = 246 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 1e-29
Identities = 86/287 (29%), Positives = 133/287 (46%), Gaps = 58/287 (20%)
Query: 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFS 406
FG A K+ +D +K +IL + + D S
Sbjct: 14 FGKNPKRALKL---------LDQGKSKAEILKKTGLVVGVNDA----------------S 48
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--------LKEFQLQWI 458
+ + G ++G SGSGKST++ L+ R +P GE+L+DG + L+E +
Sbjct: 49 LDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR---- 104
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEI-RVATELANAAKFIDKLPQG 511
RKKI +V Q L ++ +N+A+ G A EE A EL + DK P
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP-- 162
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--M 569
+LSGG +QR+ +ARA+ DP ILL+DEA SALD +Q+ L +
Sbjct: 163 ---------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAK 213
Query: 570 VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ +T V + H L +R D IA++ G+IV+ GT +++ +P Y
Sbjct: 214 LKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDY 260
|
Length = 386 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 2e-29
Identities = 80/311 (25%), Positives = 140/311 (45%), Gaps = 49/311 (15%)
Query: 403 SGFSISISSGTTAALVGQSGSGKST----VISLIERFYDPQAGEVLIDGIN---LKEFQL 455
S + G +VG+SGSGKST ++ L+ +GEV++DG + L E ++
Sbjct: 26 RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM 85
Query: 456 QWIR-KKIGLVSQEPV-----LFTGSIKDNIA--------YGKDDATTEEIRV--ATELA 499
+ +R K+I ++ Q+P+ + T I D I + +A + + L
Sbjct: 86 RKLRGKRIAMIFQDPMTSLNPVMT--IGDQIREALRLHGKGSRAEARKRAVELLEQVGLP 143
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+ + D+ P QLSGG +QR+ IA A+ P++L+ DE T+ALD ++
Sbjct: 144 DPER-RDRYPH-----------QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQA 191
Query: 560 VVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+ + L + + + H L V AD + V+++G+IVE G +++ +P+ Y+
Sbjct: 192 QILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYT 251
Query: 617 QLIRLQEA--NKESEQTIDGQRKSEISMESL---RHSSHRMSLRRSISRGSSIGNSSRHS 671
+ L A E+ I R+ + E L R+ S R R+ +
Sbjct: 252 R--GLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRK--GLFVRERGEVKAV 307
Query: 672 ISVSFGLPSGQ 682
VSF L G+
Sbjct: 308 DDVSFDLREGE 318
|
Length = 539 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 36/232 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ ++ SY RP + S+S+ G AL+G +G+GKST++ I P +GE+
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIA------------YGKDDAT 488
I G +++ + R +IG V Q+ + F ++KD + K D
Sbjct: 62 KIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD-- 116
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
E++ A E D+ +GE LSGGQKQR+ +ARA+ ++P +LLLDE
Sbjct: 117 KEKVDEALERVGMEDLRDRQ-------IGE----LSGGQKQRVLLARALAQNPDLLLLDE 165
Query: 549 ATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVR-NADMIAVIHRGKI 598
+ +D +K + + L + +T ++V H L V D + ++R I
Sbjct: 166 PFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217
|
Length = 254 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-29
Identities = 67/212 (31%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 402 FSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
F++ I + + G SG+GKST++ I P G ++++G L + + +
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 459 ----RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513
++KIGLV Q+ LF ++++N+A+G E R++ + +D L G+D
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRIS-----VDELLDLL--GLD 122
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VN 571
L+ + QLSGG+KQR+A+ARA+ P +LLLDE SALD + L +I +N
Sbjct: 123 HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLN 182
Query: 572 RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602
+ V H LS AD I V+ G++ G
Sbjct: 183 IPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 70/205 (34%), Positives = 109/205 (53%), Gaps = 23/205 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V +YP G +ISIS+G LVG SG+GKST++ LI + P +G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 444 LIDGI---NLKEFQLQWIRKKIGLVSQE-PVLFTGSIKDNIAYGKD--DATTEEIR---- 493
++G +L+ + ++R+KIG+V Q+ +L ++ +N+A+ + EIR
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A EL + LP +LSGG++QR+AIARAI+ P IL+ DE T L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 554 DAESEKVVQEALDRIMVNRTTVIVA 578
D ++ + L +I TTV+VA
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 3e-29
Identities = 72/219 (32%), Positives = 120/219 (54%), Gaps = 17/219 (7%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S+ I SG AL+G SGSGK+T++ LI P +G +L G + + +Q + +G V
Sbjct: 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ--ERNVGFV 79
Query: 466 SQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ-----GIDTLVGEH 519
Q LF ++ DN+A+G ++ +E A+ K+ + +D L +
Sbjct: 80 FQHYALFRHMTVFDNVAFGL------RVKPRSERPPEAEIRAKVHELLKLVQLDWLADRY 133
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIV 577
QLSGGQ+QR+A+ARA+ +P++LLLDE ALDA+ K ++ L R+ ++ TTV V
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFV 193
Query: 578 AHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
H + AD + V+++G+I + GT ++ + P +
Sbjct: 194 THDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 4e-29
Identities = 69/210 (32%), Positives = 110/210 (52%), Gaps = 23/210 (10%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-S 475
L+G SG GK+T++ L+ F P +G +++DG ++ + I +V Q LF +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 476 IKDNIAYG----KDDATTEEIRV--ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
+++N+A+G K + RV A L +F D+ P QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS-TVRN 586
R+A+ARA++ P+ILLLDE SALD + +Q L I + T V V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 587 ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+D IA++ +GKI + GT ++ E+P +
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLFV 197
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 4e-29
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 38/231 (16%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E+ D+ SY P + S + G A+VG +G+GKST++ I P +G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIA------------YGKDDATT 489
+ G L++ RK+IG V Q + F S++D + K D
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-- 110
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
++ A E ++ D+ I +LSGGQ+QR+ +ARA+++DP +LLLDE
Sbjct: 111 AKVDEALERVGLSELADRQ---IG--------ELSGGQQQRVLLARALVQDPDLLLLDEP 159
Query: 550 TSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTV-RNADMIAVIHRGKI 598
+ +D ++++ + E L + T ++V H L V D + +++R +
Sbjct: 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 5e-29
Identities = 74/216 (34%), Positives = 119/216 (55%), Gaps = 32/216 (14%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL--KEFQLQWIRKKIG 463
+I I G L+G +GSGKST+I + P +G+++IDG+++ K+ +L IRKK+G
Sbjct: 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVG 86
Query: 464 LVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVATELA--NAAKFIDKLPQGID 513
LV Q P LF +I+ +IA+G ++ ++ A + + + DK P
Sbjct: 87 LVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSP---- 142
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM---- 569
+LSGGQK+R+AIA + +P+IL+LDE T+ LD K E L++I
Sbjct: 143 -------FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDP---KGRDEILNKIKELHK 192
Query: 570 -VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGT 603
N T ++V+H + V + AD I V+++GK +GT
Sbjct: 193 EYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 6e-29
Identities = 74/232 (31%), Positives = 116/232 (50%), Gaps = 27/232 (11%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--K 451
+QI ++ I A +G SG GKST + R D GE+ IDGI++
Sbjct: 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSV 77
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
+ + +R K+G+V Q+P F SI DN+AYG LA K +D++ +
Sbjct: 78 DTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPK---------LHGLAKNKKKLDEIVEK 128
Query: 512 IDTLVG----------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
T VG + +LSGGQ+QR+ IARAI P +LL+DE SALD + V+
Sbjct: 129 SLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVI 188
Query: 562 QEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + N T ++V H + + +D +A G+IVE T ++ ++P+
Sbjct: 189 ENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQ 240
|
Length = 251 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 9e-29
Identities = 80/251 (31%), Positives = 124/251 (49%), Gaps = 32/251 (12%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--K 451
+Q + ++ I AL+G SG GKST + + R D GEVL+DG N+ K
Sbjct: 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDK 76
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFI 505
+ + +RK++G+V Q+P F SI DN+AYG KD ++I V L AA +
Sbjct: 77 DVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKI-VEWALKKAALWD 135
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
+ + + + +LSGGQ+QR+ IAR I P ++L+DE TSALD S +++ +
Sbjct: 136 E-----VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM 190
Query: 566 DRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624
+ T VIV H + R +D A G ++E K+ +P+
Sbjct: 191 VELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQ------------ 238
Query: 625 NKESEQTIDGQ 635
KE+E I G+
Sbjct: 239 KKETEDYISGR 249
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 27/228 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE++++ F Y + + S + G +++G +GSGKST + LI+ + ++G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKD------DATTEEIRVA 495
+IDG L E + IR KIG+V Q P F G +++D++A+G + + E + A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
EL F ++ P +LSGGQKQR+AIA A+ P+I++LDEATS LD
Sbjct: 125 LELVGMQDFKEREP-----------ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 556 ESE----KVVQEALDRIMVNRTTVI-VAHRLSTVRNADMIAVIHRGKI 598
E K ++ D + TVI + H L V +D + V+ G++
Sbjct: 174 EGRLELIKTIKGIRDD---YQMTVISITHDLDEVALSDRVLVMKNGQV 218
|
Length = 279 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-28
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 46/256 (17%)
Query: 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG------ 441
DVY+ ++ G S+ I + AL+G SG GKST + + R D
Sbjct: 52 DVYYG-----DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106
Query: 442 ------EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------------ 483
++ DG+NL E +RK++G+V Q P F SI++NI+YG
Sbjct: 107 VELDGQDIYQDGVNLVE-----LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLL 161
Query: 484 -----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
+DD E+ V L AA L ++ + ++ LSGGQ+QR+ IAR +
Sbjct: 162 ARLLGRDDKDAEDELVERSLRQAA-----LWDEVNDRLDDNALGLSGGQQQRLCIARCLA 216
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAV-IHRG 596
DP ++L+DE SALD + +++ ++ + T V+V H + R +D AV + G
Sbjct: 217 VDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGG 276
Query: 597 KIVEKGTHSKLVEDPE 612
++VE K+ E+PE
Sbjct: 277 ELVEYDDTDKIFENPE 292
|
Length = 305 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-28
Identities = 73/239 (30%), Positives = 116/239 (48%), Gaps = 34/239 (14%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ L DV FSY P F +++ +G A++G SG+GKST+++LI F P +GE
Sbjct: 1 MLALDDVRFSYGHLPMR-----FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE 55
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDAT--TEEIRVATELA 499
+LI+G++ + + ++ QE LF ++ NI G E R E A
Sbjct: 56 ILINGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA 113
Query: 500 NA----AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
A A F+ +LP +LSGGQ+QR+A+AR ++++ ILLLDE SALD
Sbjct: 114 AAQVGLAGFLKRLP-----------GELSGGQRQRVALARCLVREQPILLLDEPFSALD- 161
Query: 556 ESEKVVQEALDRIM-----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608
+ E L + T ++V H AD + + G+I +G+ +L+
Sbjct: 162 --PALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-28
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 13/129 (10%)
Query: 426 STVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG 483
ST++ LI P +G +L+DG + + +RK+IG+V Q+P LF ++++N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 484 KD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
A E F+D+ P LSGGQKQR+AIARA+LK P+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 543 ILLLDEATS 551
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 73/223 (32%), Positives = 122/223 (54%), Gaps = 30/223 (13%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---KEFQLQWIRKKI 462
S+ + +G ++G SG+GKST+I + P +G V++DG +L +L R++I
Sbjct: 25 SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQI 84
Query: 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID---TLVG- 517
G++ Q L + ++ N+A + EL N K D++ + + LVG
Sbjct: 85 GMIFQHFNLLSSRTVFGNVA------------LPLELDNTPK--DEIKRKVTELLALVGL 130
Query: 518 -----EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MV 570
+ + LSGGQKQR+AIARA+ +P++LL DEATSALD + + + E L I +
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
Query: 571 NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +++ H + V R D +AVI G+++E+GT S++ P+
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPK 233
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 38/241 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +V +YP + S I G L G SG+GKST++ LI P G++
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 444 LIDG---INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRV 494
L++G LK ++ ++R++IG+V Q+ L ++ +N+A GK RV
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRR-RV 118
Query: 495 --ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
+L LP +QLSGG++QR+AIARAI+ P +LL DE T
Sbjct: 119 SEVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGN 167
Query: 553 LDAESEKVVQEALDRIMVNR--TTVIVA-HRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
LD + + + I NR TTV++A H L V HR +E G +LV
Sbjct: 168 LDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR-----HRVLALEDG---RLVR 217
Query: 610 D 610
D
Sbjct: 218 D 218
|
Length = 223 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 71/249 (28%), Positives = 118/249 (47%), Gaps = 29/249 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ + F Y AR S ++ G AL+G +G+GKST+ SL+ R Y Q G++
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
+ G +L+ + + +G+V Q+P L S++ N+ Y G A R+A
Sbjct: 59 SVAGHDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARA-RIAEL 116
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
LA G+ + +L+GG ++R+ IARA+L P +LLLDE T LD S
Sbjct: 117 LAR---------LGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
Query: 558 EKVVQEALDRIMVNRTTVIV---AHRLSTVRNADMIAVIHRGKIVEKGTHSKL-----VE 609
+ + R + + V H + + D + V+HRG+++ G ++L
Sbjct: 168 RAAITAHV-RALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATGGA 226
Query: 610 DPEGAYSQL 618
D E A+ L
Sbjct: 227 DLEAAFLAL 235
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-28
Identities = 56/167 (33%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 1011 SAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRA 1070
++A I I +++ ++ S + + L++VSF YP +P V + L+L+I+A
Sbjct: 309 ASARRINEITEQKPEVTFPTTST--AAADQVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKA 365
Query: 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130
G+ VAL+G +G GKST++ LL R +DP G I L+G I LRQ + +VSQ L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177
F+ T+R N + A+ A+ I LQQV +LL
Sbjct: 426 FSATLRDN-------------LLLAAPNASDEALIEVLQQVGLEKLL 459
|
Length = 574 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 4e-28
Identities = 65/223 (29%), Positives = 116/223 (52%), Gaps = 14/223 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL +V + N ++ I+ G L+G SG GK+T + +I +P +G +
Sbjct: 1 VELENVTKRFG---NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
I G ++ + L + I +V Q L+ ++ DNIA+G + + + A
Sbjct: 58 YIGGRDVTD--LPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + I+ L+ QLSGGQ+QR+A+ RAI+++P++ L+DE S LDA+ ++
Sbjct: 116 ELL-----QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMR 170
Query: 563 EALDRIM--VNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKG 602
L R+ + TT+ V H ++ + AD IAV++ G+I + G
Sbjct: 171 AELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 5e-28
Identities = 72/242 (29%), Positives = 124/242 (51%), Gaps = 25/242 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE- 442
+E + V F+YP + + S SI G+ AL+G +GSGKST+ LI P
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 443 --VLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKDD---ATTEEIRVA 495
+ +DGI L + IR+K+G+V Q P F G ++ D++A+G ++ E I++
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 496 TELAN---AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
++ +ID P LSGGQKQR+AIA + +P+I++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 553 LDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
LD ++ + + + ++ N T + + H + AD + V+ GK++ +G+ ++
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 611 PE 612
E
Sbjct: 234 VE 235
|
Length = 282 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 5e-28
Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 20/227 (8%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINLKEFQ 454
Q S+ AL+G SG GKST + + R D P A GE+L+DG N+ +
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79
Query: 455 LQWI--RKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFID 506
+ + R+++G+V Q+P F SI +N+AYG KD A E RV L +AA
Sbjct: 80 VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE-RVERSLRHAA---- 134
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
L + + E LSGGQ+QR+ IARA+ +P +LL+DE SALD + + ++E +
Sbjct: 135 -LWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIH 193
Query: 567 RIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T +IV H + R +D+ A + GK++E G ++ P
Sbjct: 194 ELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPR 240
|
Length = 253 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 116 bits (294), Expect = 5e-28
Identities = 77/241 (31%), Positives = 126/241 (52%), Gaps = 32/241 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR + S+ +++ S ++I++G L+G SG GK+TV+ LI F P +G +
Sbjct: 15 VELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT--EEI--RV--AT 496
++DG ++ + + + V Q LF ++ +N+A+G T EI RV A
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEAL 129
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ +F + P QLSGGQ+QR+AIARA++ P++LLLDE+ SALD +
Sbjct: 130 RMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
Query: 557 SEKVVQEALDRIM--VNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
K +Q L + + T V V H L+ +D I V+ G+I + GT ++ E+
Sbjct: 179 LRKQMQNELKALQRKLGITFVFVTHDQEEALTM---SDRIVVMRDGRIEQDGTPREIYEE 235
Query: 611 P 611
P
Sbjct: 236 P 236
|
Length = 375 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 5e-28
Identities = 69/230 (30%), Positives = 123/230 (53%), Gaps = 5/230 (2%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G + ++D+ Y N + S SIS G L+G++GSGKST++S R + + G
Sbjct: 1 GQMTVKDLTAKYTEGGN-AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI-AYGKDDATTEEIRVATELAN 500
++ IDG++ LQ RK G++ Q+ +F+G+ + N+ YGK + EEI E
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAEEVG 116
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
I++ P +D ++ + G LS G KQ + +AR++L +ILLLDE ++ LD + +V
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
+++ L + + T ++ HR+ + VI K+ + + KL+ +
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE 226
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-28
Identities = 57/227 (25%), Positives = 114/227 (50%), Gaps = 24/227 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L ++ Y ++ G S+++ G L+G +G+GK+T++ ++ P +G +
Sbjct: 1 LQLENLTKRYG---KKRALDGVSLTLGPGMYG-LLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATT-EEIRVAT 496
IDG ++ + Q Q +R++IG + QE ++ ++++ + Y G +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVL 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
EL N K LSGG ++R+ IA+A++ DP IL++DE T+ LD E
Sbjct: 116 ELVNLGDRAKKKIG-----------SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ L + +R ++ H + V + + +AV+++GK+V +G
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-28
Identities = 73/231 (31%), Positives = 119/231 (51%), Gaps = 19/231 (8%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-----EVLIDGINL-KEF 453
Q ++ I + AL+G SG GKST++ + R D G ++ +DG ++
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76
Query: 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDK 507
+ +R K+G+V Q+P F SI +N+AYG KD +E+ V L AA + D+
Sbjct: 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV-VERSLRGAALW-DE 134
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
+ + + H LSGGQ+QR+ IAR I +P ++L+DE TSALD + ++E ++
Sbjct: 135 VKDRLKS----HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE 190
Query: 568 IMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ N T VIV H + R +D A G++VE + +P+ +Q
Sbjct: 191 LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDRTQ 241
|
Length = 249 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 9e-28
Identities = 81/267 (30%), Positives = 131/267 (49%), Gaps = 37/267 (13%)
Query: 384 IELRD--VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---- 437
IE+ + YF + I ++ I + AL+G SG GKST I + R D
Sbjct: 4 IEVENLNTYFD-----DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPG 58
Query: 438 -PQAGEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYG-----KDDATT 489
G + +DG+++ + + + RKK+G+V Q+P F SI DN+AYG +DD
Sbjct: 59 FRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDF 118
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
E RV L AA + D++ +D + LSGGQ+QR+ IAR I P ++L+DE
Sbjct: 119 IEERVEESLKAAALW-DEVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEP 173
Query: 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLV 608
SALD S +++ + ++ + T VIV H + R + + G+I+E G ++
Sbjct: 174 CSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233
Query: 609 EDPEGAYSQLIRLQEANKESEQTIDGQ 635
+P+ +K +E I G+
Sbjct: 234 INPK------------DKRTEDYITGR 248
|
Length = 250 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-27
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 20/223 (8%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQLQ-- 456
+ISI AL+G SG GKST++ R D G++L +G N+ +
Sbjct: 24 DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83
Query: 457 WIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQ 510
+R+KIG+V Q P F SI +N+AYG K+ T + I V L AA L
Sbjct: 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTI-VEKSLKGAA-----LWD 137
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+ + + LSGGQ+QR+ IAR + +P ++L+DE SALD + +++ ++ +
Sbjct: 138 EVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 571 NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +IV H + R +D ++ GK++E +++ E+P
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240
|
Length = 253 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 2e-27
Identities = 77/229 (33%), Positives = 113/229 (49%), Gaps = 27/229 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE +V +YP S+ I G L G SG+GK+T++ L+ P G+V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQE-PVLFTGSIKDNIAY-----GKDDATTEEIRV 494
I G + L+ QL +R++IG+V Q+ +L ++ +N+A GK + RV
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK-EREIQRRV 118
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A + + L D QLSGG++QR+AIARAI+ P +LL DE T LD
Sbjct: 119 GA----ALRQVG-LEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLD 169
Query: 555 AESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMIAVIHRGKIVEKG 602
+ + + + L R+ TTVIVA H LS V V HR I++ G
Sbjct: 170 PDLSERILDLLKRLNKRGTTVIVATHDLSLVDR-----VAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-27
Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 23/243 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----P 438
I +DV+ SY N + G S+ AL+G SG GKST + + R D
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 439 QAGEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
GE+ +G N+ + L +RK++G+V Q+P F S+ DN+AYG KD +
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
+ RV L AA + + D L + SGGQ+QRI IARA+ P+++LLDE T
Sbjct: 122 Q-RVEESLKQAAIW----KETKDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPT 175
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
SALD S ++E L + T ++V H L R +D A + G ++E G ++
Sbjct: 176 SALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFI 235
Query: 610 DPE 612
P+
Sbjct: 236 APK 238
|
Length = 251 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 5e-27
Identities = 84/269 (31%), Positives = 131/269 (48%), Gaps = 20/269 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I L +V +SYP ++ I G ++G++GSGKST+ + PQ G+V
Sbjct: 2 IRLENVSYSYP--DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 444 LIDGINLKEF-QLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKDDATTE--EIRVATEL 498
L+ GI+ +F +LQ IRK +G+V Q P F G ++++++A+G ++ EIR +
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A A ++K LSGGQ Q +A+A + +P L+ DE TS LD +S
Sbjct: 120 ALAEIGLEKYRH-------RSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSG 172
Query: 559 KVVQEALDRIMVN-RTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY-- 615
V E + ++ +T V + H L + +AD I V+ RGKIV +G ++ D
Sbjct: 173 IAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLG 232
Query: 616 ---SQLIRLQEANKESEQTIDGQRKSEIS 641
LI L E K I + S S
Sbjct: 233 LTPPSLIELAENLKMHGVVIPWENTSSPS 261
|
Length = 274 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 5e-27
Identities = 72/204 (35%), Positives = 111/204 (54%), Gaps = 15/204 (7%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL----KEFQLQWIRKKIGLVSQEPVL 471
A+ G+SGSGK+T+I LI P GE++++G L K L +++IG V QE L
Sbjct: 27 AIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARL 86
Query: 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
F S++ N+ YG A E R+ + + I+ L GI L+G +LSGG+KQR
Sbjct: 87 FPHLSVRGNLRYGMKRARPSERRI-----SFERVIELL--GIGHLLGRLPGRLSGGEKQR 139
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNA 587
+AI RA+L PR+LL+DE +ALD + + L+R+ + V+H L V R A
Sbjct: 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199
Query: 588 DMIAVIHRGKIVEKGTHSKLVEDP 611
D + V+ G++ G +++ P
Sbjct: 200 DRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-27
Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 17/202 (8%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--- 454
++ I +++I G A++G+SGSGKST++++I +G+V ++G
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 455 -LQWIRKKIGLVSQEPVLF-TGSIKDNIAYG---KDDATTEEIRVATELANAAKFIDKLP 509
++ R+K+G + Q L ++++N+ G K + E+ E KL
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLK 129
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
Q I +LSGG++QR+A+ARAILK P ++L DE T +LD ++ V + L +
Sbjct: 130 QKI--------YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
Query: 570 -VNRTTVIVAHRLSTVRNADMI 590
+T +IV H + AD +
Sbjct: 182 DEGKTIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 68/245 (27%), Positives = 128/245 (52%), Gaps = 28/245 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ ++ YP +Q +++I+ G A++G SG+GKST++ I R +P +G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 444 LIDG---INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT---------- 489
L++G L+ +L+ +R++IG++ Q L ++ +N+ +G+
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 490 -EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
E+ A ++++ G+ + QLSGGQ+QR+AIARA+ + P ++L DE
Sbjct: 120 EEDKERALSA------LERV--GLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADE 171
Query: 549 ATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605
++LD ++ K V + L RI T +I H++ + AD I + G+IV G S
Sbjct: 172 PIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPS 231
Query: 606 KLVED 610
+L ++
Sbjct: 232 ELDDE 236
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 82/219 (37%), Positives = 113/219 (51%), Gaps = 28/219 (12%)
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQLQ--WIRKK 461
I G AL+G SG GKSTV+ + R D G VL DG +L + ++ +R++
Sbjct: 36 IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95
Query: 462 IGLVSQEPVLFTGSIKDNIAYGKD----DATTEEIRVATELANAAKF---IDKLPQGIDT 514
IG+V Q+P F SI +NIA+G +E+ V L AA + DKL
Sbjct: 96 IGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL-VERSLRKAAVWDECKDKL------ 148
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
E G LSGGQ+QR+ IAR I +P ++L+DE SALD S ++E + + N T
Sbjct: 149 --NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 575 VIVAHRL-STVRNADMIAVIHRGKIVEKGTHSK---LVE 609
VIV H + VR +DM A + VE G+ K LVE
Sbjct: 207 VIVTHNMQQAVRVSDMTA-FFNAEEVEGGSGGKVGYLVE 244
|
Length = 269 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 5e-26
Identities = 59/196 (30%), Positives = 96/196 (48%), Gaps = 23/196 (11%)
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
YP P ++ G + + G AL+G +G+GKST++ + PQ+G VLIDG L
Sbjct: 1 YPGGP--EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 453 FQ--LQWIRKKIGLVSQEP--VLFTGSIKDNIAYG------KDDATTEEIRVATELANAA 502
+ L R+++GLV Q+P LF + ++A+G + +R A A+
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGAS 118
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
++ LSGG+K+R+AIA A+ P +LLLDE T+ LD + +
Sbjct: 119 GLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQML 167
Query: 563 EALDRIMVNRTTVIVA 578
L R+ TV+++
Sbjct: 168 AILRRLRAEGMTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 77/247 (31%), Positives = 131/247 (53%), Gaps = 25/247 (10%)
Query: 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS----LIERFY 436
IE+RD+ S+ ++ G ++ I T AL+G SGSGKST++ LIE +
Sbjct: 1 MNKIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57
Query: 437 DPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGSIKDNIAYG-------KDDA 487
+ + +GEV +DG ++ + + +R+++ +V Q P + SI +N+A G K
Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 488 TTEE-IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
+E +R A E A+ D++ +D G +LSGGQ+QR+ IARA+ P +LL
Sbjct: 118 ELQERVRWALE---KAQLWDEVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLA 170
Query: 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKGTHS 605
DE T+ LD E+ ++ + + T V+V H R +D +A +++G+IVE G
Sbjct: 171 DEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230
Query: 606 KLVEDPE 612
++ +P
Sbjct: 231 EVFTNPR 237
|
Length = 250 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 8e-26
Identities = 69/253 (27%), Positives = 127/253 (50%), Gaps = 26/253 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ D+ SY Q S G L+G++G+GK+T++ +I P +G+V
Sbjct: 2 LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
IDG++ ++R+KIG++ E L+ + ++N+ Y G +
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIK-----AR 113
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+A +K + L + +D VGE S G KQ++AIARA++ DP IL+LDE TS LD +
Sbjct: 114 IAELSKRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 558 EKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV-----ED 610
+ + + ++ R + +H + V D + V+H+G++V +G+ L +
Sbjct: 169 RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLRN 228
Query: 611 PEGAYSQLIRLQE 623
E ++ ++L+E
Sbjct: 229 LEEIFAFALKLEE 241
|
Length = 245 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 19/221 (8%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQWIR-KK 461
S++I G ++G SGSGKST++ L+ R +P G+VLIDG+++ + +L+ +R KK
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 462 IGLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQ-GIDTLVG 517
I +V Q L ++ DN A+G + A EE R K +D L Q G++
Sbjct: 108 IAMVFQSFALMPHMTVLDNTAFGMELAGINAEERR--------EKALDALRQVGLENYAH 159
Query: 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTV 575
+ +LSGG +QR+ +ARA+ +P ILL+DEA SALD +Q+ L ++ RT V
Sbjct: 160 SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIV 219
Query: 576 IVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++H L +R D IA++ G++V+ GT +++ +P Y
Sbjct: 220 FISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-25
Identities = 67/223 (30%), Positives = 123/223 (55%), Gaps = 8/223 (3%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
+ G S I+ +VG++GSGKST++ R + GE+ ++G + + L+ +R+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVG 517
+ ++ Q+PVLF G+++ N+ D +A++ E+ A EL + + +GID+ V
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNV----DPFLEASSAEVWAALELVGLRERVASESEGIDSRVL 1440
Query: 518 EHGTQLSGGQKQRIAIARAILK-DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
E G+ S GQ+Q + +ARA+LK +L+DEAT+ +D ++ +Q + T +
Sbjct: 1441 EGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVIT 1500
Query: 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+AHRL TV D I V+ G + E G+ +LV + + + ++
Sbjct: 1501 IAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
|
Length = 1560 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 81/265 (30%), Positives = 128/265 (48%), Gaps = 24/265 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E RD+ +SYP + G + G AL+G +G+GKST+ P +GEV
Sbjct: 2 LETRDLKYSYP--DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELA 499
LI G I + L +RK +G+V Q P LF ++++++A+G + + V +
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
A K + +G + H LSGGQK+R+AIA + P I++LDE TS LD
Sbjct: 120 EALKAVGM--EGFENKPPHH---LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174
Query: 560 VVQEALDRIMVNR---TTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ + L + N+ T +I H + V AD + V+ GKI+++GT ++ D E
Sbjct: 175 QIMKLLYDL--NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIR 232
Query: 616 SQLIRL-------QEANKESEQTID 633
+RL + NKE I
Sbjct: 233 KANLRLPRVAHLIEILNKEDNLPIK 257
|
Length = 275 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 27/246 (10%)
Query: 384 IELRD--VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439
IE + VY+ + + G + I AL+G SG GKST++ R + +
Sbjct: 5 IETVNLRVYYG-----SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEE 59
Query: 440 A---GEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATT 489
A GEV + G N+ + I R+++G+V Q P F +I DN+A G +
Sbjct: 60 ARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSK 119
Query: 490 EEI--RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
+E+ RV L AA L + + ++ + LSGGQ+QR+ IARA+ P+ILL+D
Sbjct: 120 KELDERVEWALKKAA-----LWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMD 174
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIVAHR-LSTVRNADMIAVIHRGKIVEKGTHSK 606
E T+ +D ++E L + T V+V H R +D +A ++ GK++E G K
Sbjct: 175 EPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRK 234
Query: 607 LVEDPE 612
+ E+PE
Sbjct: 235 VFENPE 240
|
Length = 253 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 80/268 (29%), Positives = 137/268 (51%), Gaps = 52/268 (19%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ D++ Y +E + G S+ ++G +++G SGSGKST + I P AG +
Sbjct: 7 LEVEDLHKRYG--EHE-VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 444 LIDG--INLK-----------EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------ 483
++G I LK + QLQ +R ++G+V Q L++ ++ +N+
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123
Query: 484 --KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
K +A + A K++ K+ GI + LSGGQ+QR+AIARA+ +P
Sbjct: 124 VSKAEA----------IERAEKYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEP 171
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHR 595
++L DE TSALD E +V E L ++M + RT V+V H + R+ + + +H+
Sbjct: 172 EVMLFDEPTSALDPE---LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQ 227
Query: 596 GKIVEKGTHSKLVEDPEGAYSQLIRLQE 623
GKI E+G ++ +P+ RL++
Sbjct: 228 GKIEEEGPPEQVFGNPQSP-----RLKQ 250
|
Length = 256 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 74/236 (31%), Positives = 115/236 (48%), Gaps = 35/236 (14%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---------- 450
+ G + S+++G AL+G SGSGKST++ ++ G++ ++G L
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 451 ---KEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYG----KDDATTEEIRVATELANAA 502
E L+ +R KIG+V Q LF ++ DN+ A E + A EL +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
DK QLSGGQ+QR+AIARA+ P+++L DE TSALD E +V
Sbjct: 135 GLADKADH--------MPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVG 183
Query: 563 EALDRIM-----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
E L+ I + T ++V H + R AD + +G+IVE+G ++ P+
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPK 239
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 32/243 (13%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--KEFQLQWIR 459
+ I A++G SG GKST I + R + G++L N+ K + ++ +R
Sbjct: 45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELR 104
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGID 513
+G+V Q+P F SI DN+ YG KD T +EI V L AA + D+L +
Sbjct: 105 TNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-VEKSLRGAAIW-DELKDRLH 162
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
+ LSGGQ+QR+ IAR + +P ++L+DE TSALD S V+E + + + +
Sbjct: 163 D----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218
Query: 574 TVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTI 632
+IV H + R +D A G + E K+ +P ++K +E I
Sbjct: 219 IIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP------------SDKRTEDYI 266
Query: 633 DGQ 635
G+
Sbjct: 267 TGR 269
|
Length = 271 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 2e-25
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 35/289 (12%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
+ S + G A+ G +GSGKS+++ +I +P G++ G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF---IDKLPQGIDTLVG 517
+I Q + G+IKDNI +G + +E R T + A + I P+ T++G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFG---LSYDEYRY-TSVIKACQLEEDIALFPEKDKTVLG 543
Query: 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVI 576
E G LSGGQ+ RI++ARA+ KD + LLD + LD +EK + + L ++M N+T ++
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQR 636
V +L ++ AD I ++H G GT S+L S L+ L E+ +R
Sbjct: 604 VTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGL-----EAFDNFSAER 658
Query: 637 KSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD 685
++ I E+LR R SI G S S +I SF P +FA+
Sbjct: 659 RNSILTETLR--------RVSID-GDSTVFSGPETIKQSFKQPPPEFAE 698
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-25
Identities = 40/97 (41%), Positives = 66/97 (68%), Gaps = 2/97 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ +++VSF YP + + QV ++L+L+++ G+ +AL+G SGSGKST++ LL P G I
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
TLDGV + L+ K L + +++Q P LF+ T+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 68/242 (28%), Positives = 123/242 (50%), Gaps = 26/242 (10%)
Query: 384 IELRDVYFSYPARPNEQIFS--GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I ++V F Y + + F+ S +I G ++VG +GSGKST+ L+ ++G
Sbjct: 8 IVFKNVSFQYQS---DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPV-LFTGSI-KDNIAYGKD------DATTEEIR 493
E+ + + + + +RK IG+V Q P F GSI K ++A+G + D +
Sbjct: 65 EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A + + + D P LSGGQKQR+AIA + +P +++LDEATS L
Sbjct: 125 EALKQVDMLERADYEPNA-----------LSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 554 DAESEKVVQEALDRIMVNRTTVIVA--HRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
D ++ + + + + ++ I++ H LS AD + V+++G + ++GT +++ +
Sbjct: 174 DPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233
Query: 612 EG 613
E
Sbjct: 234 EE 235
|
Length = 269 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 5e-25
Identities = 72/228 (31%), Positives = 119/228 (52%), Gaps = 34/228 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L V + Y P E F ++++ G A++G SG+GKST+++LI F +P +G +
Sbjct: 1 LALDKVRYEYEHLPME-----FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG-----KDDATTEE-IRVAT 496
++ + L ++ + ++ QE LF +++ NI G K +A +E + A
Sbjct: 56 KVNDQS--HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ A ++D+LP+ QLSGGQ+QR+A+AR +++ ILLLDE SALD
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALD-- 160
Query: 557 SEKVVQEALDRIMV-----NRTTVIVAHRLS-TVRNADMIAVIHRGKI 598
+ +E L + RT ++V H LS A IAV+ +GKI
Sbjct: 161 -PLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 5e-25
Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 19/238 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+ ++ F Y + +G S SI+ G +++GQ+GSGKST LI+ ++ G+V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG-SIKDNIAYGKDDA---TTEEIRVATEL 498
IDG L + +R+KIG+V Q P F G +++D++A+G ++ E I+ E
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD---- 554
A +D +LSGGQKQR+A+A I P I++LDE+TS LD
Sbjct: 125 LLAVNMLD--------FKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
E +V+ E ++ + T + + H L ++D I V+ G+I+++ S+L E
Sbjct: 177 QEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSE 232
|
Length = 277 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-25
Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 20/225 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L + FSY +P F ++ + G A+VG SGSGKST+++LI F PQ+G V
Sbjct: 1 VRLDKIRFSYGEQPMH-----FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDAT--TEEIRVATELAN 500
LI+G+++ + + ++ QE LF +++ N+ G T E R A E+A
Sbjct: 56 LINGVDVT--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
A G+ L +LSGG++QR+A+AR +++D +LLLDE +ALD
Sbjct: 114 AR-------VGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE 166
Query: 561 VQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ + + + T ++V H+ + A + + G+I +G
Sbjct: 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 6e-25
Identities = 78/221 (35%), Positives = 115/221 (52%), Gaps = 26/221 (11%)
Query: 409 ISSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGINL-----KEFQLQWI 458
I S A++G SG GKST + I R D P G ++ DG ++ E L
Sbjct: 62 ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL--- 118
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGI 512
RKKIG+V Q+P F SI DNIAYG D EEI V L AA + D++ +
Sbjct: 119 RKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEI-VEKSLRKAALW-DEVSDRL 176
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
D ++ LSGGQ+QR+ +AR + +P ILLLDE TSALD ++ +++ + + +
Sbjct: 177 D----KNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232
Query: 573 TTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +IV H + R +D + G +VE ++L +P+
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPK 273
|
Length = 286 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-25
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 34/218 (15%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK---EFQLQ 456
Q+ ++ I+ G L G SGSGK+T+++LI Q G + + G L E +L
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 457 WIRKKIGLVSQ-----------EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI 505
+R+ IG + Q + V ++ N++Y + + A L + +
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDH---L 135
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D P LSGGQKQR+AIARA++ P+++L DE T+ALD++S + V E +
Sbjct: 136 DYYPH-----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184
Query: 566 DRIMVNR--TTVIVAH--RLSTVRNADMIAVIHRGKIV 599
++ + T +IV H R+ V AD I + GK++
Sbjct: 185 QKLAREQGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 7e-25
Identities = 70/234 (29%), Positives = 111/234 (47%), Gaps = 32/234 (13%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLIDGINLKEFQLQWI 458
++S+ G ALVG+SGSGKS I P GE+L+DG L L
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP--LSIR 60
Query: 459 RKKIGLVSQEPV-----LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI-------D 506
+ I + Q P LFT + ++ E +R +L+ A+ +
Sbjct: 61 GRHIATIMQNPRTAFNPLFT--MGNHA--------IETLRSLGKLSKQARALILEALEAV 110
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
LP + ++ ++ QLSGG QR+ IA A+L +P L+ DE T+ LD ++ V + L
Sbjct: 111 GLPDP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
Query: 567 RIMVNRTTVI--VAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ T I + H L V R AD +AV+ G+IVE+GT ++ +P+ ++
Sbjct: 170 ELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 79/238 (33%), Positives = 119/238 (50%), Gaps = 41/238 (17%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-----EVLIDG---INL 450
+ + G + + G A++G SGSGK+T++ I P+AG ++ ID ++
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQ 75
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRVATELANAAKFI 505
++ ++ +R+ +G V Q LF ++ +NI G K + E A EL AK
Sbjct: 76 QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELL--AK-- 131
Query: 506 DKLPQGIDTLVGEHGTQ------LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
VG G + LSGGQ+QR+AIARA+ P ++L DE TSALD E
Sbjct: 132 ----------VGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE--- 178
Query: 560 VVQEALDRIMV----NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+V E L+ I RT VIV H +S R+ AD + +G+IVE+G L DP+
Sbjct: 179 LVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQ 236
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (262), Expect = 8e-25
Identities = 80/236 (33%), Positives = 119/236 (50%), Gaps = 34/236 (14%)
Query: 416 ALVGQSGSGKSTVISLIERFYD--PQ---AGEVLI--DGINL--KEFQLQWIRKKIGLVS 466
AL+G SG GKST + R +D P GE+++ D +N+ E +R +I +V
Sbjct: 46 ALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105
Query: 467 QEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520
Q+P F SI +N+AYG K + EE RV L NAA L + +G+
Sbjct: 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEE-RVENALRNAA-----LWDEVKDRLGDLA 159
Query: 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
LSGGQ+QR+ IARA+ DP ILL DE TSALD + ++E + + T +IV H
Sbjct: 160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHN 219
Query: 581 L-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
+ R +D A ++ G+++E G + P+ NK++E I G+
Sbjct: 220 MQQAARVSDYTAYMYMGELIEFGATDTIFIKPK------------NKQTEDYITGR 263
|
Length = 265 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 9e-25
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 20/238 (8%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINL--KEFQLQWI 458
+I I + AL+G SG GKST + + R D G V+ +G N+ F + +
Sbjct: 27 NIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
R+KIG+V Q P F SI DNI+YG T++ + E+ + L + +
Sbjct: 87 RRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNT 146
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
+ LSGGQ+QR+ IAR + +P ++L+DE TSALD S ++E + + + T +IV
Sbjct: 147 NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVT 206
Query: 579 HRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
H + R +D A G I E+ + +L +P+ N ++E+ I G+
Sbjct: 207 HNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPK------------NTKTEEYISGK 252
|
Length = 254 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-24
Identities = 91/303 (30%), Positives = 148/303 (48%), Gaps = 35/303 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + + F++ AR +G + SI G A+VGQ G GKS+++S + D G V
Sbjct: 637 ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+ G + V Q+ + S+++NI +GK E L A
Sbjct: 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGK---ALNEKYYQQVLEACAL 739
Query: 504 FID--KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
D LP G T +GE G LSGGQKQR+++ARA+ + I L D+ SA+DA K +
Sbjct: 740 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 799
Query: 562 QEAL---DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
E + + ++ N+T ++V H +S + D+I V+ GKI E G++ +L+ +GA+++
Sbjct: 800 FEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELL-QRDGAFAEF 858
Query: 619 IRLQEANKESEQTID--------GQRKSEISMES--LRHSSHRMSLRRSISRGSSI-GNS 667
+R A E + ++ G+ K +E+ L L+R +S SS G+
Sbjct: 859 LR-TYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQ 917
Query: 668 SRH 670
SRH
Sbjct: 918 SRH 920
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-24
Identities = 76/221 (34%), Positives = 122/221 (55%), Gaps = 23/221 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S++I G AL+G SG GKST++ ++ F P AG++++DG++L + ++ I ++
Sbjct: 39 SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMM 96
Query: 466 SQEPVLFTG-SIKDNIAYG--KDDATTEEI--RVAT--ELANAAKFIDKLPQGIDTLVGE 518
Q LF +++ NIA+G +D EI RV L + +F + P
Sbjct: 97 FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH-------- 148
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ-EALDRI-MVNRTTVI 576
QLSGGQ+QR+A+AR++ K P++LLLDE ALD + +Q E +D + V T V+
Sbjct: 149 ---QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVM 205
Query: 577 VAH-RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
V H + + A IA+++RGK V+ G ++ E P YS
Sbjct: 206 VTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
|
Length = 377 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 58/184 (31%), Positives = 92/184 (50%), Gaps = 24/184 (13%)
Query: 389 VYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448
+ SY +P S++I+SG ++G SG GK+T+++LI F P G + ++G
Sbjct: 9 LSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 449 NLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507
+++ + G+V Q L ++ DN+A+G I A A + +
Sbjct: 68 -----RIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQML-- 117
Query: 508 LPQGIDTLVGEHGT------QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
LVG G QLSGG +QR+ IARA+ +P++LLLDE ALDA + + +
Sbjct: 118 ------ALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQM 171
Query: 562 QEAL 565
QE L
Sbjct: 172 QELL 175
|
Length = 259 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 1e-24
Identities = 69/228 (30%), Positives = 124/228 (54%), Gaps = 8/228 (3%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDPQA---GEVLIDGINLK 451
++ I +I I + + ++G SGSGKST++ ++ R YD + G+VL G ++
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 452 EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
+ +RK++G+V Q+P F SI DNIAY +E R ++ L +
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+ + +QLSGGQ+QR+ IARA+ P++LL+DE TS +D + + +++ + +
Sbjct: 142 EVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN 201
Query: 571 NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
VIV+H V R AD +A ++ G++VE G+ +++ P+ ++
Sbjct: 202 EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNELTE 249
|
Length = 257 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 73/245 (29%), Positives = 122/245 (49%), Gaps = 29/245 (11%)
Query: 384 IELRDVYFSY-PARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I +V ++Y P E Q + G A+VGQ+GSGKST+I I P G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 442 EVLIDGINL----KEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGK-------DDAT 488
V +D I + K+ ++ +RK+IG+V Q E LF +++ I +G D+
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
R+ +L + + + P Q+SGGQ ++IAI + +P I++LDE
Sbjct: 123 NYAHRLLMDLGFSRDVMSQSP-----------FQMSGGQMRKIAIVSILAMNPDIIVLDE 171
Query: 549 ATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHS 605
T+ LD +S++ V L + N+T ++V+H ++ V R AD + V+ G IV + +
Sbjct: 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPK 231
Query: 606 KLVED 610
+L +D
Sbjct: 232 ELFKD 236
|
Length = 286 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 2e-24
Identities = 94/384 (24%), Positives = 159/384 (41%), Gaps = 87/384 (22%)
Query: 816 EHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL----IILV 871
++S+G + +R + +R ++ + + + A L + F SW+LAL + LV
Sbjct: 229 QYSTGDLASRAMG-ISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALV 287
Query: 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF---CAEEKVMQLY 928
+ + V G Q++ + E + +++ V I ++ AE +
Sbjct: 288 AIAVTLVLGLLQVRK-------ERRLLELSGKISGLTVQLINGISKLRVAGAENRA---- 336
Query: 929 KKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASF------YAGARLVEDGKATFSDV 982
FA +A F A+ +E+ F+ V
Sbjct: 337 -----------------------------FARWAKLFSRQRKLELSAQRIENLLTVFNAV 367
Query: 983 FKVFFSLTMTAIGISQ--SSSFSSDSNKAKSAAASIF---------AIIDRESKIDPSDE 1031
V S + A IS + S S A + A F +I + I +
Sbjct: 368 LPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWER 427
Query: 1032 SGTILE-------------DVKGEIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALV 1077
+ ILE + G IE+ V+F+Y RPD + D++L+I G+ VA+V
Sbjct: 428 AKPILEALPEVDEAKTDPGKLSGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIV 485
Query: 1078 GESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137
G SGSGKST++ LL F P++G + DG ++ L ++ +R+Q+G+V Q L + +I
Sbjct: 486 GPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFE 545
Query: 1138 NIAYGKGGDA--TEAEIQAASEMA 1159
NIA G A T E A+ MA
Sbjct: 546 NIA----GGAPLTLDEAWEAARMA 565
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-24
Identities = 81/241 (33%), Positives = 125/241 (51%), Gaps = 48/241 (19%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTV---ISLIERFYDPQAGEVLIDGINLKEF---QLQW 457
G S ++ G T A+VG+SG GKST+ +++IE P GE+ G +L + +
Sbjct: 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDLLKADPEAQKL 89
Query: 458 IRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEE-IRVATELANAAKFIDKLPQ 510
+R+KI +V Q P YG K EE + + T L +AA+ +K
Sbjct: 90 LRQKIQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSL-SAAERREKA-L 135
Query: 511 GIDTLVG---EHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ- 562
+ VG EH + SGGQ+QRIAIARA++ DP +++ DE SALD VQ
Sbjct: 136 AMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS----VQA 191
Query: 563 EALDRIM-----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+ L+ +M + + V ++H LS V + AD + V++ G+ VEKGT ++ +P Y+
Sbjct: 192 QVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYT 251
Query: 617 Q 617
Q
Sbjct: 252 Q 252
|
Length = 327 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 73/238 (30%), Positives = 118/238 (49%), Gaps = 13/238 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-- 441
I++R V F Y Q+ ++ A++G SG GKST++ + R D +G
Sbjct: 5 IKIRGVNFFYH---KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 442 ---EVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVA 495
VL+D N+ L + RK++G+V Q+P F SI DN+A+G + TT + R+
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRL- 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ + L + + + G LSGGQ+QR+ IAR + +P ++L+DE SALD
Sbjct: 121 DEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDP 180
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
S ++E + + N T IV H + R +D + G +VE G ++ P
Sbjct: 181 VSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238
|
Length = 251 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 77/251 (30%), Positives = 130/251 (51%), Gaps = 29/251 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++V + Q+ ++I G ++G SGSGKST++ I + + +G++
Sbjct: 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 444 LIDGINLK--EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATE 497
++DG+ + + + IR++ G+V Q+ LF + +N+ +G A+ EE A +
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEE---AEK 115
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A + K+ G+ + ++LSGGQ+QR+AIARA+ P+++L DE TSALD E
Sbjct: 116 QARE--LLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPEL 171
Query: 558 E----KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
KV+Q+ + M T VIV H + A + I +G+I E G L+++P
Sbjct: 172 RHEVLKVMQDLAEEGM---TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPP 228
Query: 613 GAYSQLIRLQE 623
RLQE
Sbjct: 229 SQ-----RLQE 234
|
Length = 240 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-24
Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 31/249 (12%)
Query: 383 DIELRDVYFSYPAR-PNEQI-FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
DI + V Y + P E+ ++SI SG+ A++G +GSGKST++ + P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 441 GEVLIDGINL----KEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYG-------KDDA 487
G V I + K +L+ +RKK+G+V Q E LF +++ +I +G ++DA
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLL 546
A + I+ + G+ + +LSGGQ +R+AIA + +P +L+L
Sbjct: 122 ----------KQKAREMIELV--GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVL 169
Query: 547 DEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
DE T+ LD + K + E ++ TTV+V H + AD I V+H+G + +GT
Sbjct: 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
Query: 604 HSKLVEDPE 612
++ DP+
Sbjct: 230 PREIFADPD 238
|
Length = 290 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 17/227 (7%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINLKE 452
++Q ++ + GT AL+G SG GK+T + I R +D P A G +L+DG ++
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 453 FQLQWI--RKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEE----IRVATELANAAKFI 505
++ + R+++G+V Q+P F T S+ DN+ G A + + VA A
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALW 135
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D++ + T T LSGGQ+QR+ IARA+ +P ILL+DE TSALD S +++ +
Sbjct: 136 DEVKDRLKT----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLM 191
Query: 566 DRIMVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+ T +IV H + R +D + G +VE G +L +P
Sbjct: 192 TDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
|
Length = 252 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-24
Identities = 79/259 (30%), Positives = 122/259 (47%), Gaps = 47/259 (18%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR + S+ + G S+++ G AL+G++G+GKST++ ++ Y P +GE+
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 444 LIDGINLKEFQLQWIRKK----IGLVSQEPVLFTG-SIKDNIAYGK---------DDATT 489
LIDG K R I V QE L S+ +NI G+ D
Sbjct: 66 LIDG---KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM 122
Query: 490 EEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547
A + + +L ID TLVG+ LS Q+Q + IARA+ D R+L+LD
Sbjct: 123 RRR--------ARELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILD 170
Query: 548 EATSALD-AESE---KVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602
E T+AL E+E +++ + + ++HRL V AD I V+ G++V G
Sbjct: 171 EPTAALTVKETERLFDLIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVV--G 225
Query: 603 THSKLVEDPEGAYSQLIRL 621
T E E +L+RL
Sbjct: 226 TRPTAAETSE---DELVRL 241
|
Length = 500 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 79/241 (32%), Positives = 131/241 (54%), Gaps = 22/241 (9%)
Query: 384 IELRDVYFSYPA-RPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I L++V ++Y A P E + +++I G+ A +G +GSGKST++ L+ + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 442 EVLIDGINL----KEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGKDD--ATTEEIR 493
V +D + K ++ IRKK+GLV Q E LF ++ ++A+G + + EE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEE-- 120
Query: 494 VATELANAAKFIDKLPQ-GID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A LA +KL GI +L ++ +LSGGQ +R+AIA + +P+IL+LDE T+
Sbjct: 121 -AEALAR-----EKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTA 174
Query: 552 ALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609
LD + K + ++ + T V+V H + V N AD + V+ +GK+V G + +
Sbjct: 175 GLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
Query: 610 D 610
D
Sbjct: 235 D 235
|
Length = 280 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 4e-24
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 17/237 (7%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA- 440
G I + + +Y A + S+ I +G AL+G+SG GK+T++ I F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 441 -GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATEL 498
G + I +L ++ + L+ Q LF ++DN+A+G + +A +
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A+A K + G+ QLSGG +QRIAIARAI +P +LLLDE SALDA
Sbjct: 119 ADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 559 KVVQE---ALDRIMVNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
++E AL + T + V H + + AD ++ G++ G L + P
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 4e-24
Identities = 80/255 (31%), Positives = 120/255 (47%), Gaps = 47/255 (18%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINL--KEFQLQWI 458
+++I + A +G SG GKSTV+ + R ++ P A GEVL+DG +L +
Sbjct: 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83
Query: 459 RKKIGLVSQEPVLF-TGSIKDNIAYG----------KDDATTEEIRVATELANAAKFIDK 507
R+ IG+V Q P F T SI+DN+ G D E+ L N K D+
Sbjct: 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK--DR 141
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
L + G LSGGQ+QR+ IARAI +P +LL+DE SALD S +++ ++
Sbjct: 142 L--------DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE 193
Query: 568 IMVNRTTVIVAHRL-STVRNAD------MIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620
+ + T VIV H + R +D + A G++VE K+ +P
Sbjct: 194 LKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNP--------- 244
Query: 621 LQEANKESEQTIDGQ 635
K +E I G+
Sbjct: 245 ---TQKATEDYISGR 256
|
Length = 258 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 24/247 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
++ I G A+ G +GSGK++++ LI +P G++ G +I
Sbjct: 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFS 103
Query: 466 SQEPVLFTGSIKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
SQ + G+IK+NI +G D+ + + A +L I K P+ +T++GE G L
Sbjct: 104 SQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED---ITKFPEKDNTVLGEGGITL 160
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLS 582
SGGQ+ RI++ARA+ KD + LLD LD +EK + E+ + ++M N+T ++V ++
Sbjct: 161 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKME 220
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISM 642
++ AD I ++H G GT S+L S+L+ ++ S +R++ I
Sbjct: 221 HLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFSA-----ERRNSILT 275
Query: 643 ESLRHSS 649
E+LR S
Sbjct: 276 ETLRRFS 282
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 79/266 (29%), Positives = 121/266 (45%), Gaps = 35/266 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA- 440
I DV+ Y + G + + AL+G SG GKST + + R D P
Sbjct: 6 ITSSDVHLFYGKF---EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 441 --GEVLIDGINL--KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTE 490
G V + G N+ + +RK++G+V Q+P F SI +N+ YG KD A +
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
E V T L AA + + + + E LSGGQ+QR+ IAR + P ++LLDE T
Sbjct: 123 EA-VETSLKQAAIWDE-----VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPT 176
Query: 551 SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
SALD S ++ L + T ++V H + R +D A G ++E ++
Sbjct: 177 SALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFL 236
Query: 610 DPEGAYSQLIRLQEANKESEQTIDGQ 635
+P+ KE+E I G+
Sbjct: 237 NPK------------EKETEDYITGR 250
|
Length = 252 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (259), Expect = 7e-24
Identities = 85/293 (29%), Positives = 140/293 (47%), Gaps = 38/293 (12%)
Query: 363 RKPEIDAYDTKGKI-LDDIRGDI------ELRDVYFSYPARPNEQIFSGFSISISSGTTA 415
+K E+ + K K +D ++ D E+R+ F Y R + + ++ I
Sbjct: 53 KKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVT 111
Query: 416 ALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQLQWI--RKKIGLVSQE 468
A +G SG GKST + + + D GE+ G N + ++ + R +IG+V Q+
Sbjct: 112 AFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171
Query: 469 PVLFTGSIKDNIAYGK-----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
P F SI DN+AYG +D E V L +AA + D++ +D + G L
Sbjct: 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALW-DEVKDDLD----KAGNAL 226
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583
SGGQ+QR+ IARAI +P +LL+DE TSALD + ++E + + + +IV H ++
Sbjct: 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQ 286
Query: 584 V-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
R +D ++G I E G ++ I + NK ++ I G+
Sbjct: 287 AQRISDETVFFYQGWIEEAGE------------TKTIFIHPKNKRTKDYISGK 327
|
Length = 329 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 76/237 (32%), Positives = 118/237 (49%), Gaps = 38/237 (16%)
Query: 416 ALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGINLKEFQLQW--IRKKIGLVSQE 468
AL+G SGSGKST++ I R D P+ G ++ +G N+ + +RK+IG+V Q+
Sbjct: 35 ALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94
Query: 469 PVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA---KFIDKLPQGIDTLVGEH 519
P F SI +N+ YG KD +E V L A+ + D+L D+ +G
Sbjct: 95 PNPFPMSIYENVVYGLRLKGIKDKQVLDEA-VEKSLKGASIWDEVKDRLH---DSALG-- 148
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
LSGGQ+QR+ IAR + P+I+LLDE TSALD S ++E L + + T ++V
Sbjct: 149 ---LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTR 205
Query: 580 RLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
+ R +D G ++E ++ +P +KE+E I G+
Sbjct: 206 SMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP------------KHKETEDYISGK 250
|
Length = 252 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-23
Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 20/228 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +++ YFS+ ++ S ++ + G+ A+VG +G GK+++IS + P++
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEE--IRVATELAN 500
++ IR + V Q +F +++DNI +G D E I V T L +
Sbjct: 675 VV------------IRGTVAYVPQVSWIFNATVRDNILFGSPFDPERYERAIDV-TALQH 721
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEK 559
+D LP G T +GE G +SGGQKQR+++ARA+ + + + D+ SALDA +
Sbjct: 722 D---LDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607
V + + + +T V+V ++L + D I ++H G I E+GT+ +L
Sbjct: 779 VFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEEL 826
|
Length = 1622 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 1e-23
Identities = 62/195 (31%), Positives = 103/195 (52%), Gaps = 19/195 (9%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL----KEFQLQWIRKKIGLVSQEPVL 471
AL G SGSGK+++I++I P G + ++G L K L +++IG V Q+ L
Sbjct: 28 ALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARL 87
Query: 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
F +++ N+ YG + + + + L GI+ L+ + LSGG+KQR
Sbjct: 88 FPHYTVRGNLRYGMWKSMRAQF---------DQLVALL--GIEHLLDRYPGTLSGGEKQR 136
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNA 587
+AI RA+L P +LL+DE ++LD ++ + L+R+ +N + V+H L V R A
Sbjct: 137 VAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLA 196
Query: 588 DMIAVIHRGKIVEKG 602
D + V+ GK+ G
Sbjct: 197 DRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 70/234 (29%), Positives = 126/234 (53%), Gaps = 12/234 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE RD+ +SY +++ + + + A++G +G+GKST+ P +G V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
LI G + + ++ +RK +GLV Q P +F+ +++ +IA+G + +E VA +++A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+ G++ L LSGG+K+R+AIA I +P++L+LDE T+ LD + K +
Sbjct: 122 LHML-----GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 562 QEALDRIMVN--RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ L+ + T + H+L V AD I V+ +G+IV GT ++ P+
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPD 230
|
Length = 277 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 56/161 (34%), Positives = 91/161 (56%), Gaps = 6/161 (3%)
Query: 1011 SAAAS-IFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIR 1069
SAA S I A++ + E + + +GE++++ F YP D ++N ++
Sbjct: 284 SAAYSRIRAMLAEAPVVKDGSEP---VPEGRGELDVNIRQFTYPQT-DHPALENVNFTLK 339
Query: 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129
G+ + + G +GSGKST++SL+QR +D G I + + KLQL R ++ +VSQ P
Sbjct: 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399
Query: 1130 LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
LF+DT+ NIA G+ DAT+ EI+ + +A+ H I L Q
Sbjct: 400 LFSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQ 439
|
Length = 569 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 95/375 (25%), Positives = 159/375 (42%), Gaps = 49/375 (13%)
Query: 818 SSGAIGARLSADAAS-----VRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVM 872
G + RL AD + VR +V +A +V + AA ++ S ALI+
Sbjct: 108 RRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAVL-----SVPAALILAAG 162
Query: 873 LPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKV----MQLY 928
L L G S A E+A + + T A A E V +
Sbjct: 163 LLLAGF-------VAPLVSLRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAA 215
Query: 929 KKKCEAPMK--TGIRQGMVSGGGFGASFFLLFAFYA--ASFYAGARLVEDGK---ATFS- 980
+ E + T + + GA+ LL A A + +AG V DG+ T +
Sbjct: 216 LAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAV 275
Query: 981 ------DVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI-DPSDESG 1033
F+ F +L A +++ ++AA I ++D + + S +
Sbjct: 276 LVLLPLAAFEAFAALPAAAQQLTR----------VRAAAERIVEVLDAAGPVAEGSAPAA 325
Query: 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093
+ K +EL +S YP V ++L + G+ VA++G SGSGKST+++ L
Sbjct: 326 GAVGLGKPTLELRDLSAGYP--GAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAG 383
Query: 1094 FYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQ 1153
DP G +TLDGV + L +R+++ + +Q+ LF+ T+R N+ + DAT+ E+
Sbjct: 384 LLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLAR-PDATDEELW 442
Query: 1154 AASEMANAHKFICSL 1168
AA E ++ +L
Sbjct: 443 AALERVGLADWLRAL 457
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 79/222 (35%), Positives = 109/222 (49%), Gaps = 30/222 (13%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINL--KEFQLQWI 458
+ I A +G SG GKST++ R D P G+V G NL + +
Sbjct: 30 WLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA---KFIDKLP 509
R++IG+V Q+P F SI DNIAYG K D +E+ V L AA + DKL
Sbjct: 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGD--MDEL-VERSLRQAALWDEVKDKLK 146
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
Q G LSGGQ+QR+ IARAI P ++L+DE SALD S ++E + +
Sbjct: 147 QS--------GLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK 198
Query: 570 VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGT-HSKLVE 609
T +IV H + R +DM A + ++ E G + LVE
Sbjct: 199 EQYTIIIVTHNMQQAARVSDMTAFFN-VELTEGGGRYGYLVE 239
|
Length = 264 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 59/225 (26%), Positives = 106/225 (47%), Gaps = 20/225 (8%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIRK 460
S+ + G L+G +G+GK+T+ +LI FY P +G V+ G L ++ R
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI--ARL 79
Query: 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATT--------EEIRVATELANAAKFI-DKLPQ 510
I Q LF G ++ +N+A G + E A+ + + +
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-- 137
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-- 568
G+ L LS GQ++R+ IARA+ P++LLLDE + L+ E + + E + +
Sbjct: 138 GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD 197
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +++ H + V AD I V++ G+++ +GT ++ +P
Sbjct: 198 RGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNPR 242
|
Length = 250 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 68/216 (31%), Positives = 117/216 (54%), Gaps = 23/216 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
+++I GT L+G SG GK+TV+ L+ P G++ IDG ++ +Q ++ I +V
Sbjct: 26 NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMV 83
Query: 466 SQEPVLFTG-SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
Q LF S+ +N+ YG + + ++ A EL + A F D+ +D
Sbjct: 84 FQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY---VD----- 135
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVI 576
Q+SGGQ+QR+A+ARA++ P++LL DE S LDA + ++E + + N T++
Sbjct: 136 ---QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLY 192
Query: 577 VAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
V H S +D + V+++GKI++ G+ +L P
Sbjct: 193 VTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 99.4 bits (249), Expect = 3e-23
Identities = 67/227 (29%), Positives = 109/227 (48%), Gaps = 25/227 (11%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQWIR 459
S S+ G L+G +G+GK+T+ +LI F P +G VL DG L ++ R
Sbjct: 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI--AR 74
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYG---------KDDATTEEIRVATELANAA-KFIDKL 508
IG Q P LF ++ +N+ E R A E A + + L
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV-GL 133
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALDR 567
D GE LS GQ++R+ IARA+ DP++LLLDE + L E+E++ E +
Sbjct: 134 ADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIRE 188
Query: 568 IMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T ++V H + V + AD + V+ +G+++ +GT ++ +P
Sbjct: 189 LRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 3e-23
Identities = 79/245 (32%), Positives = 117/245 (47%), Gaps = 40/245 (16%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKS-TVISLIERFYDPQA----GEVLIDGINL---K 451
+ G S I +G T ALVG+SGSGKS T +S++ P A G +L DG +L
Sbjct: 24 EAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83
Query: 452 EFQLQWIR-KKIGLVSQEPV-----LFTGSIKDNIA------YGKDD----ATTEEIRVA 495
E QL+ +R KIG++ QEP+ L T I +A G A E+
Sbjct: 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHT--IGKQLAEVLRLHRGLSRAAARARALELLEL 141
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ K +D P +LSGGQ+QR+ IA A+ +P +L+ DE T+ALD
Sbjct: 142 VGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTALDV 190
Query: 556 ESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L + + + + H L VR AD + V+ G+IVE GT L P+
Sbjct: 191 TVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQ 250
Query: 613 GAYSQ 617
Y++
Sbjct: 251 HPYTR 255
|
Length = 534 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 4e-23
Identities = 71/222 (31%), Positives = 113/222 (50%), Gaps = 21/222 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINL--KEFQLQWI 458
S+ + A++G SG GKSTV+ I R +D P A G++L+D ++ + I
Sbjct: 24 SMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK------DDATTEEIRVATELANAAKFIDKLPQG 511
R+++G+V Q+P F SI DN+ G + + +EI V + L A L
Sbjct: 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEI-VESSLKRVA-----LWDE 137
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
+ + + +LSGGQ+QR+ IAR I P ++L+DE SALD S ++E ++ +
Sbjct: 138 VKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEK 197
Query: 572 RTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
T +IV H + R +D A + G +VE G K+ PE
Sbjct: 198 YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
|
Length = 252 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 98.6 bits (245), Expect = 4e-23
Identities = 67/220 (30%), Positives = 113/220 (51%), Gaps = 10/220 (4%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ + YFS+ S +I I +G +VGQ G GKS+++ I G+V
Sbjct: 1 VQVTNGYFSWG--SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV 58
Query: 444 LIDGINLKEFQLQWIRKK----IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
N E + R + + +Q+P L ++++NI +G + + T+
Sbjct: 59 HWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDAC 117
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SE 558
+ ID LP G T +GE G LSGGQ+QRI +ARA+ ++ I+ LD+ SALD S+
Sbjct: 118 SLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177
Query: 559 KVVQEALDRIMVN--RTTVIVAHRLSTVRNADMIAVIHRG 596
++QE + + + + RT V+V H+L + +AD I + G
Sbjct: 178 HLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 7e-23
Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 32/239 (13%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L + Y A Q ++ G T L+G SG+GKS+++ ++ P++G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 444 LIDGINLK------EFQLQWIRKKIGLVSQEPVLFTG-SIKDNI--------AYGKDDAT 488
I G + + ++ +R+ +G+V Q+ L+ ++++N+ KD A
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
++ L + D+ P LSGGQ+QR+AIARA++ +P++LL DE
Sbjct: 120 ARAEKLLKRL-RLKPYADRYP-----------LHLSGGQQQRVAIARALMMEPQVLLFDE 167
Query: 549 ATSALDAE-SEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605
T+ALD E + ++V + T VIV H + R A + + G IVE+G S
Sbjct: 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226
|
Length = 242 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 8e-23
Identities = 70/215 (32%), Positives = 110/215 (51%), Gaps = 8/215 (3%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD--PQ---AGEVLIDGINL--KEFQLQWI 458
++SI A++G SG GKST I + P GE+ +G N+ + L +
Sbjct: 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
RK IG+V Q+ F SI DN+AYG T+ + E+ + L + +
Sbjct: 92 RKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHT 151
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA 578
LSGGQ+QR+ IARA+ +P +LL+DE TSALD S + ++E + ++ T VIV
Sbjct: 152 QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVT 211
Query: 579 HRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
H + R +D A + G++VE +K+ +P+
Sbjct: 212 HNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
|
Length = 259 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 9e-23
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 61/219 (27%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR + + + G S+S+ G AL+G++G+GKST++ ++ Y P +GE+
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L+DG + V F S +D A A
Sbjct: 58 LVDG--------------------KEVSFA-SPRD--------------------ARRA- 75
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQ 562
GI + QLS G++Q + IARA+ ++ R+L+LDE T+AL AE E++
Sbjct: 76 -------GIAMV-----YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF- 122
Query: 563 EALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKIV 599
+ + R+ VI ++HRL V AD + V+ G++V
Sbjct: 123 KVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 9e-23
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 15/225 (6%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF 453
+Q S+ I + AL+G SG GKST I + R D G+V I+G ++ E
Sbjct: 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP 84
Query: 454 QLQWI--RKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELA-NAAKFIDKL 508
+ + RK +G+V Q+P F SI DN+AYG A +++ E A +A D+
Sbjct: 85 DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET 144
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
+ + LSGGQ+QR+ IAR + P+I+L DE TSALD S +++ + +
Sbjct: 145 SDRLKS----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200
Query: 569 MVNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T VIV H + R +D G+++E G ++ +P
Sbjct: 201 KKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPR 245
|
Length = 258 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 97.3 bits (243), Expect = 1e-22
Identities = 45/130 (34%), Positives = 68/130 (52%), Gaps = 16/130 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----P 1097
IEL ++ Y D +D++L I G+ AL+G SG GKST++ LL R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 1098 DAGHITLDGVEIQKLQLK--WLRQQMGLVSQEPVLFNDTIRANIAYG------KGGDATE 1149
D G + LDG +I L + LR+++G+V Q+P F +I N+AYG K + +
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 1150 AEIQAASEMA 1159
++ A A
Sbjct: 118 ERVEEALRKA 127
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-22
Identities = 77/261 (29%), Positives = 131/261 (50%), Gaps = 28/261 (10%)
Query: 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437
+D+R ++ + + G S+++ G T LVG+SGSGKST+ + R
Sbjct: 280 EDLRVWFPIKGGFLRRTVDHLRAV-DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP 338
Query: 438 PQAGEVLIDG---INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV 494
Q GE+ DG L +++ +R+++ +V Q+P GS+ + G+ E +RV
Sbjct: 339 SQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY---GSLSPRMTVGQ--IIEEGLRV 392
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHG----------TQLSGGQKQRIAIARAILKDPRIL 544
+AA ++ + I+ L E G + SGGQ+QRIAIARA++ P ++
Sbjct: 393 HEPKLSAA---ERDQRVIEALE-EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELI 448
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601
LLDE TSALD + V + L + + + ++H L+ VR + V+ GKIVE+
Sbjct: 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ 508
Query: 602 GTHSKLVEDPEGAYSQ-LIRL 621
G + +P+ Y++ L+
Sbjct: 509 GPTEAVFANPQHEYTRALLAA 529
|
Length = 534 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-22
Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 19/220 (8%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
S+S+ G L+G SG GK+T++ +I AG + G ++ Q +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+ G+V Q LF ++ DNIAYG + VA +A + G+ +
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERK 130
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESEKVVQE--ALDRIMVNRTTV 575
+ QLSGGQ+QR+A+ARA+ P +LLLDE SALDA E + E L R + TT+
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTI 189
Query: 576 IVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+V H LS AD I V++ G I + GT ++ P
Sbjct: 190 MVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHP 226
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.9 bits (246), Expect = 1e-22
Identities = 77/269 (28%), Positives = 127/269 (47%), Gaps = 29/269 (10%)
Query: 357 MFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAA 416
+ + + K EI + + + +E++D+ Y ++ + S+ I A
Sbjct: 1 VVQMVREKIEIAPFPEAKEHI------LEVKDLSIYYG---EKRAVNDISMDIEKHAVTA 51
Query: 417 LVGQSGSGKSTVISLIERFYD--PQA---GEVLIDGINLKEFQLQWI--RKKIGLVSQEP 469
L+G SG GKST + I R D P A GE+L +G+N+ + + + R++IG+V Q+P
Sbjct: 52 LIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKP 111
Query: 470 VLFTGSIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
F SI +NI + + + +EI V L AA L + + L
Sbjct: 112 NPFPKSIYNNITHALKYAGERRKSVLDEI-VEESLTKAA-----LWDEVKDRLHSSALSL 165
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-S 582
SGGQ+QR+ IAR + P +LLLDE SALD S ++E + + + +IV H +
Sbjct: 166 SGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQ 225
Query: 583 TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+R +D A G +VE ++ P
Sbjct: 226 ALRVSDRTAFFLNGDLVEYDQTEQIFTSP 254
|
Length = 268 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 1e-22
Identities = 77/247 (31%), Positives = 132/247 (53%), Gaps = 38/247 (15%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN---------- 449
++ G S+ ++G +++G SGSGKST + I P G ++++G
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 450 LKEF---QLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN--AAK 503
LK QL+ +R ++ +V Q L++ ++ +N+ +A + + ++ + A A K
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVM----EAPIQVLGLSKQEARERAVK 134
Query: 504 FIDKLPQGIDTLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
++ K+ GID G++ LSGGQ+QR++IARA+ +P +LL DE TSALD E +V
Sbjct: 135 YLAKV--GIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LVG 189
Query: 563 EALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
E L RIM +T V+V H + R+ + + +H+GKI E+G +L +P+
Sbjct: 190 EVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP-- 246
Query: 617 QLIRLQE 623
RLQ+
Sbjct: 247 ---RLQQ 250
|
Length = 257 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (244), Expect = 2e-22
Identities = 74/245 (30%), Positives = 120/245 (48%), Gaps = 22/245 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ ++ F Y ++I G S+ I A++G SG GKST + + R + + EV
Sbjct: 8 IKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63
Query: 444 LIDG--------INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRV 494
++G I + L +R+++ +V +P LF S+ DN+AYG K ++ +
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
+ +A K D L I + + LSGGQ+QR+ IARA+ P++LL+DE LD
Sbjct: 124 DDIVESALKDAD-LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182
Query: 555 AESEKVVQEALD--RIMVNRTTVIVAHRLSTV-RNADMIAVIHR-----GKIVEKGTHSK 606
+ V+ + R+ T VIV+H L V R +D A G++VE G K
Sbjct: 183 PIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242
Query: 607 LVEDP 611
+ P
Sbjct: 243 IFNSP 247
|
Length = 261 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 96.8 bits (242), Expect = 2e-22
Identities = 48/233 (20%), Positives = 105/233 (45%), Gaps = 23/233 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++R++ +Y S+++ G L+G +G+GK+T + ++ P +G
Sbjct: 1 LQIRNLTKTYKKGTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATE 497
I+G +++ + R+ +G Q LF ++++++ + G + +
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG--------LPKSEI 110
Query: 498 LANAAKFIDK--LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ L + LSGG K+++++A A++ P +LLLDE TS LD
Sbjct: 111 KEEVELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
S + + + + + R+ ++ H + D IA++ GK+ G+ +L
Sbjct: 167 ASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 2e-22
Identities = 67/247 (27%), Positives = 126/247 (51%), Gaps = 18/247 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ ++ ++Y G +I+I G A++G +G+GKST+ + P +G +
Sbjct: 6 LKVEELNYNYS--DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELA 499
L DG I+ L +R+ +G+V Q+P LF+ S+ ++++G + E V +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----A 555
NA K GI+ L + LS GQK+R+AIA ++ +P++L+LDE T+ LD +
Sbjct: 124 NALK-----RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVS 178
Query: 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
E K++ E + + T +I H + V D + V+ G+++ +G ++ + E
Sbjct: 179 EIMKLLVEMQKELGL--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEML 236
Query: 615 YSQLIRL 621
+RL
Sbjct: 237 RKVNLRL 243
|
Length = 283 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 2e-22
Identities = 72/303 (23%), Positives = 127/303 (41%), Gaps = 58/303 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I L ++ +Y RP + S++++ G LVG++G+GKST++ ++ +P +GE
Sbjct: 3 MITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG-------KDDATTEEIRV 494
V ++G +SQEP L ++ D + G + +
Sbjct: 60 VTRPK-----------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHG-----------------TQLSGGQKQRIAIARAI 537
A ++ L + +D E + LSGG ++R+A+ARA+
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168
Query: 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH-R--LSTVRNADMIAVIH 594
L++P +LLLDE T+ LD ES + +++ L R T ++V+H R L V A I +
Sbjct: 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSHDRYFLDNV--ATHILELD 224
Query: 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSL 654
RGK+ G YS + + E +++ E+ + R
Sbjct: 225 RGKLTPYK----------GNYSSYLEQKAERLRQEAAAYEKQQKEL--AKEQEWIRRGKA 272
Query: 655 RRS 657
S
Sbjct: 273 AAS 275
|
Length = 530 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 2e-22
Identities = 67/242 (27%), Positives = 114/242 (47%), Gaps = 38/242 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L + Y A Q ++ G T L+G SG+GKS+++ ++ P++G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 444 LIDGINL------KEFQLQWIRKKIGLVSQE----PVLFTGSIKDNI--------AYGKD 485
I G + + ++ +R+ +G+V Q+ P L +++ N+ KD
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKD 116
Query: 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
A ++ L + D+ P LSGGQ+QR+AIARA++ +P++LL
Sbjct: 117 QALARAEKLLERL-RLKPYADRFPL-----------HLSGGQQQRVAIARALMMEPQVLL 164
Query: 546 LDEATSALDAE-SEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
DE T+ALD E + ++V + T VIV H + R A + + G IVE+G
Sbjct: 165 FDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224
Query: 604 HS 605
S
Sbjct: 225 AS 226
|
Length = 242 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 2e-22
Identities = 58/229 (25%), Positives = 112/229 (48%), Gaps = 22/229 (9%)
Query: 384 IELRDVYFSY-PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I + + + Q G S ++ G L+G +G+GK+T + ++ +P AG
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----G-KDDATTEEIRVA 495
+DG ++ + + R+++G VS L+ + ++N+ Y G K D T +
Sbjct: 62 ATVDGFDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEEL 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ + +D+ G S G +Q++AIARA++ DP +LLLDE T+ LD
Sbjct: 121 ADRLGMEELLDRRVGG-----------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 556 ESEKVVQEALDRIMVNRTTVIVA-HRLSTV-RNADMIAVIHRGKIVEKG 602
+ + ++E + ++ ++ + H + V R D + V+HRG++V +G
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 3e-22
Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
EL ++SF YP D++L I+ G+ V +VG +GSGKST++ LL P +G +
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+DG ++ KL LK LR+++GLV Q P F T+ +A+G
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG 100
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 96.3 bits (241), Expect = 3e-22
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 26/223 (11%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQ 456
QI G S+++ G AL+G++G+GK+T++ I P++G + DG L +
Sbjct: 14 QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHER- 72
Query: 457 WIRKKIGLVSQEPVLFTG-SIKDNI---AYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
R IG V + +F ++++N+ AY + A + L + +L +
Sbjct: 73 -ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRA-----KRKARLERVYELFPRLKERR 126
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VN 571
L G LSGG++Q +AIARA++ P++LLLDE + L + K+V+E + I +
Sbjct: 127 KQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELR 179
Query: 572 R---TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
T ++V AD V+ RG++V +GT ++L+ D
Sbjct: 180 DEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-22
Identities = 61/210 (29%), Positives = 111/210 (52%), Gaps = 2/210 (0%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
+ S S+ G L+G++GSGKST++S + R + GE+ IDG++ LQ RK
Sbjct: 1234 VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRK 1292
Query: 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520
G++ Q+ +F+G+ + N+ + + EEI E I++ P +D ++ + G
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNLD-PYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Query: 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580
LS G KQ + +AR+IL +ILLLDE ++ LD + +++++ L + N T ++ HR
Sbjct: 1352 YVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411
Query: 581 LSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
+ + VI + + + KL+ +
Sbjct: 1412 VEALLECQQFLVIEGSSVKQYDSIQKLLNE 1441
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-22
Identities = 70/227 (30%), Positives = 122/227 (53%), Gaps = 23/227 (10%)
Query: 384 IELRDVYFSYPA-RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+E+R + +P N+ + S+S+ G AL+G++G+GKST++ ++ Y P +GE
Sbjct: 5 LEMRGITKRFPGVVANDDV----SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGE 60
Query: 443 VLIDGINLKEFQL----QWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATE 497
+ +DG KE ++ IR IG+V Q +L T ++ +NI G + + I
Sbjct: 61 IRVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA 117
Query: 498 LANAAKFIDK--LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-D 554
A + ++ LP D V + LS G++QR+ I +A+ + R+L+LDE T+ L
Sbjct: 118 RARIKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 555 AESEKVVQEALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKIV 599
E++++ E L R+ T+I + H+L V AD + V+ RGK+V
Sbjct: 174 QEADELF-EILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 5e-22
Identities = 61/215 (28%), Positives = 113/215 (52%), Gaps = 17/215 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L++V + I + S S+ +G + G SG GKST++ ++ P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L +G ++ + + R+++ +Q P LF ++ DN+ + +IR + A
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF------PWQIRNQQ--PDPAI 116
Query: 504 FIDKLPQ-GI-DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
F+D L + + DT++ ++ +LSGG+KQRI++ R + P++LLLDE TSALD ++ V
Sbjct: 117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
Query: 562 QEALDRIMVNRTTVI--VAHRLSTVRNADMIAVIH 594
E + R + + + V H + +AD VI
Sbjct: 177 NEIIHRYVREQNIAVLWVTHDKDEINHAD--KVIT 209
|
Length = 225 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 7e-22
Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 16/241 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--- 440
I+++D+ F Y + G S+ I A++G SG GKST I + R + +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 441 --GEVLIDGINLKE--FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
G V G N+ + + +R++IG+V Q P F SI +N+AYG +
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
E+ +A L Q + + + LSGGQ+QR+ IARA+ P++LL+DE SALD
Sbjct: 125 EIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPI 184
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRL-STVRNADMIAVIHR-----GKIVEKGTHSKLVED 610
+ V+E + + T IV H + R +D A G++VE G +++ +
Sbjct: 185 ATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244
Query: 611 P 611
P
Sbjct: 245 P 245
|
Length = 259 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 8e-22
Identities = 75/226 (33%), Positives = 119/226 (52%), Gaps = 21/226 (9%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457
Q+ + S+ I SG AL+G SGSGK+T++ +I +G + G ++ +L
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVS--RLHA 71
Query: 458 IRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVAT--ELANAAKFIDKLPQGIDT 514
+K+G V Q LF ++ DNIA+G + V E NAA K+ Q ++
Sbjct: 72 RDRKVGFVFQHYALFRHMTVFDNIAFG--------LTVLPRRERPNAAAIKAKVTQLLEM 123
Query: 515 LVGEH-----GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
+ H QLSGGQKQR+A+ARA+ +P+ILLLDE ALDA+ K ++ L ++
Sbjct: 124 VQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLH 183
Query: 570 --VNRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ T+V V H + + AD + V+ +G I + GT ++ +P
Sbjct: 184 EELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229
|
Length = 353 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 9e-22
Identities = 42/103 (40%), Positives = 65/103 (63%), Gaps = 6/103 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +VS +Y V D++L I AG+ VAL+G SGSGKST++ + +PD+G I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 1103 TLDGVEIQKL--QLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
+DG ++ L +L LR+++G+V Q+ LF + T+ NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG 100
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 9e-22
Identities = 60/213 (28%), Positives = 110/213 (51%), Gaps = 12/213 (5%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457
++I + S+S+ +G AL+G +G GKST++ R PQ+G V + + +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 458 IRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATE---LANAAKFIDKLPQGID 513
+ +++ L+ Q + G ++++ +AYG+ + R++ E N A +++ I+
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQA--MEQT--RIN 129
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-- 571
L T LSGGQ+QR +A + +D ++LLDE T+ LD + +V L R +
Sbjct: 130 HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI-NHQVELMRLMRELNTQG 188
Query: 572 RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGT 603
+T V V H L+ R D + V+ G ++ +GT
Sbjct: 189 KTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
|
Length = 255 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.5 bits (235), Expect = 1e-21
Identities = 63/221 (28%), Positives = 119/221 (53%), Gaps = 14/221 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+EL+ V + I + S+S+ +G A+ G SG GKST++ ++ P +G +
Sbjct: 4 LELKQVGYLAGDAK---ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV-ATELANAA 502
L +G ++ + + R+++ +Q P LF +++DN+ + +IR + A A
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIF------PWQIRNRRPDRAAAL 114
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + D+++ ++ T+LSGG+KQRIA+ R + P+ILLLDE TSALD +++ ++
Sbjct: 115 DLLARFALP-DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173
Query: 563 EALDRIMV--NRTTVIVAH-RLSTVRNADMIAVIHRGKIVE 600
E + R + N + + H + +R+AD + + G E
Sbjct: 174 EMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 1e-21
Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 43/215 (20%)
Query: 394 PARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLK 451
P++ +Q+ S G A++G SG+GKST+++ + R +GEVLI+G L
Sbjct: 17 PSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD 76
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
+ RK IG V Q+ +L + V L AAK +G
Sbjct: 77 ---KRSFRKIIGYVPQDDILH-----------------PTLTVRETLMFAAKL-----RG 111
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV- 570
+ SGG+++R++IA ++ +P +L LDE TS LD+ S V L R +
Sbjct: 112 L-----------SGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLL-RRLAD 159
Query: 571 -NRTTVIVAHRLST--VRNADMIAVIHRGKIVEKG 602
RT + H+ S+ D + ++ +G+++ G
Sbjct: 160 TGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-21
Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 21/210 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S+S+ G ++G +GSGKST++ + ++ G V W + I V
Sbjct: 680 SVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAERSIAYV 726
Query: 466 SQEPVLFTGSIKDNIAY-GKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
Q+ + +++ NI + ++DA + +RV+ A+ A+ L G++T +GE G
Sbjct: 727 PQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQ----LGGGLETEIGEKGVN 782
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQEALDRIMVNRTTVIVAHRL 581
LSGGQK R+++ARA+ + + LLD+ SALDA E+VV+E + +T V+ H++
Sbjct: 783 LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQV 842
Query: 582 STVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
V AD + + G++ G+ + +
Sbjct: 843 HVVPRADYVVALGDGRVEFSGSSADFMRTS 872
|
Length = 1560 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 2e-21
Identities = 70/242 (28%), Positives = 117/242 (48%), Gaps = 20/242 (8%)
Query: 384 IELRDVYFSY-PARPNEQI-FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I+ +V + Y P P E+ S + G+ ALVG +GSGKST++ P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 442 EVLIDG----INLKEFQLQWIRKKIGLVSQ--EPVLFTGSIKDNIAYGKDD--ATTEEIR 493
+ I G L+ +RKK+ LV Q E LF ++ ++ +G + + +E +
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A K++ K+ G+ + +LSGGQ +R+AIA + +P IL LDE +
Sbjct: 123 EK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAG 175
Query: 553 LDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
LD E K ++Q D T ++V H + V AD + V+ GK+++ + ++ D
Sbjct: 176 LDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235
Query: 611 PE 612
E
Sbjct: 236 KE 237
|
Length = 287 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.8 bits (238), Expect = 2e-21
Identities = 76/267 (28%), Positives = 132/267 (49%), Gaps = 26/267 (9%)
Query: 379 DIRGDIELRDVYFSYPAR-PNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
D DI L +V ++Y + P E + + S++ ++G +GSGKST+I L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61
Query: 437 DPQAGEVLIDG----INLKEF-QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATT 489
+ G+ ++ NLK+ +++ +RK+IGLV Q P LF +I+ +IA+G +
Sbjct: 62 ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
+ ++ K + +LP+ V +LSGGQK+R+A+A I D L+LDE
Sbjct: 122 NKQEAYKKVPELLKLV-QLPE---DYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEP 177
Query: 550 TSALDAESEKVVQEALDRIMVN--RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTH-- 604
T LD + E+ +R+ + ++V H + V R AD + V+H GK++ G+
Sbjct: 178 TGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFE 237
Query: 605 --------SKLVEDPEGAYSQLIRLQE 623
+K+ DP Y + +L+
Sbjct: 238 IFSNQELLTKIEIDPPKLYQLMYKLKN 264
|
Length = 289 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 2e-21
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 30/225 (13%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF- 453
A+ + + S+SI G T L+G+SG GKST+ L+ P G V G +L +
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79
Query: 454 --QLQWIRKKIGLVSQE---PVLFTGSIKDNIA-----YGKDDATTEEIRVATELANA-- 501
Q + R+ + LV Q+ V +++ I D + ++ R+A EL +
Sbjct: 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIA-ELLDMVG 138
Query: 502 --AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
++ DKLP+ QLSGGQ QRI IARA+ P++++LDEA S LD +
Sbjct: 139 LRSEDADKLPR-----------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQA 187
Query: 560 VVQEALDRIMVNRTT--VIVAHRLSTV-RNADMIAVIHRGKIVEK 601
V+ E L ++ T + + H L V +AV+ +G+IVE+
Sbjct: 188 VILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 3e-21
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 20/231 (8%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E R++ R + S+++ G A++G +G+GKST++ + P +GEV
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYGKDDATTEEIRVATELANAA 502
++G L ++ + ++ ++ Q L F ++++ +A G+ +A A
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAA- 118
Query: 503 KFIDKLPQ-GIDTLVGEHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALD- 554
L Q + L G QLSGG++QR+ +AR + PR LLLDE TSALD
Sbjct: 119 -----LAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
Query: 555 AESEKVVQEALDRIMVNRTTVI-VAHRLS-TVRNADMIAVIHRGKIVEKGT 603
A V++ A VI V H L+ R AD I ++H+G++V GT
Sbjct: 174 AHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 7e-21
Identities = 85/280 (30%), Positives = 125/280 (44%), Gaps = 65/280 (23%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439
G + L DV+ PA+ +I A +G SG GKST++ R D P
Sbjct: 32 GFLALVDVHLKIPAK---KII-------------AFIGPSGCGKSTLLRCFNRMNDLIPG 75
Query: 440 A---GEVLIDGINLKEFQLQWI--RKKIGLVSQEPVLFTGSIKDNIAYGK---------D 485
A G +L N+ + Q+ + R+++G+V Q P F SI +NIA+ D
Sbjct: 76 AKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD 135
Query: 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
+ + +R A + K DKL E GT LSGGQ+QR+ IARAI P +LL
Sbjct: 136 ELVEDSLRRAA-IWEEVK--DKLK--------EKGTALSGGQQQRLCIARAIAMKPDVLL 184
Query: 546 LDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIH---------R 595
+DE SALD S + V+E + T ++V H + R AD A + R
Sbjct: 185 MDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRR 244
Query: 596 GKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
GK+VE ++ P+ KE+ + I G+
Sbjct: 245 GKLVEFSPTEQMFGSPQ------------TKEAREYISGR 272
|
Length = 274 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 1e-20
Identities = 67/229 (29%), Positives = 104/229 (45%), Gaps = 40/229 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL---- 450
++ + + S+S+ SG T AL+G+SG GKST+ L+ P G V G L
Sbjct: 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
Query: 451 ----KEFQ--LQWI----------RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV 494
K F+ +Q + RK + + +EP+ S+ + A E+
Sbjct: 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDK----AERLARASEMLR 136
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A +L +DK P QLSGGQ QR+ +ARA+ +P++L+LDEA S LD
Sbjct: 137 AVDLD--DSVLDKRPP-----------QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
Query: 555 AESEKVVQEALDRIMVNRTT--VIVAHRLSTV-RNADMIAVIHRGKIVE 600
+ V L ++ T + + H L V R + V+ G+IVE
Sbjct: 184 LVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 2e-20
Identities = 94/416 (22%), Positives = 166/416 (39%), Gaps = 48/416 (11%)
Query: 776 LLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRA 835
+LS Q + V G +L I + + + +S+F +G I +R + ++ + A
Sbjct: 211 ILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFST--RRTGEIVSRFTDASSIIDA 268
Query: 836 LVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAK 895
L L+ + GL + L L+ L+ +P+ V + + DA
Sbjct: 269 LASTILSLFLDMWILVIVGLFLVRQNM-LLFLLSLLSIPVYAVIIILFKRTFNKLNHDAM 327
Query: 896 MKYEEASQVANDA----VGSIRTVASFCAEEKVMQL-------YKKKCEAPMKT-GIRQG 943
+A+ V N + + I T+ S +E + Y K K +Q
Sbjct: 328 ----QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQA 383
Query: 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKV-----FFSLTMTAIGISQ 998
+ + + +L + GA LV GK T + +F + I Q
Sbjct: 384 IKAVTKLILNVVIL--------WTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQ 435
Query: 999 SSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES----GTILEDVKGEIELHHVSFKYPS 1054
K AA + E + S+ T L ++ G+I ++ VS+ Y
Sbjct: 436 P----------KLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY 485
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
+ D++L I+ +VG SGSGKST+ LL F+ +G I L+G ++ +
Sbjct: 486 --GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR 543
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
LRQ + + QEP +F+ +I N+ G + ++ EI AA E+A I ++
Sbjct: 544 HTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPL 599
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (229), Expect = 2e-20
Identities = 74/237 (31%), Positives = 108/237 (45%), Gaps = 50/237 (21%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW--------- 457
+ I +G SG GKSTV+ + R D L+ G E + +
Sbjct: 29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMND------LVKGFRF-EGHVHFLGQDVYGKG 81
Query: 458 -----IRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIRVATELANAA---K 503
+R+ IG+V Q+P F+ SI DN+A+G K D RV L AA +
Sbjct: 82 VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGD---RVKHALQGAALWDE 138
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
DKL G LSGGQ+QR+ IARAI +P +LLLDE SALD + + V+E
Sbjct: 139 VKDKLKVS--------GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE 190
Query: 564 ALDRIMVNRTTVIVAHRL-STVRNADMIAVI--------HRGKIVEKGTHSKLVEDP 611
+ + + T +V H + +R AD A G +VE G +++ ++P
Sbjct: 191 LMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247
|
Length = 261 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 91.3 bits (227), Expect = 2e-20
Identities = 52/200 (26%), Positives = 85/200 (42%), Gaps = 41/200 (20%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-------IDGINLKE 452
+ S+++++G AL G SG+GKST++ + Y P +G +L +D
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 453 FQLQWIRKK-IGLVSQ---------------EPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
++ +R+K IG VSQ EP+L G + A + + +
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG-VPREAARARARELLARLNIPE 140
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
L + SGG++QR+ IAR + D ILLLDE T++LDA
Sbjct: 141 RLWHLPP-----------------ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 557 SEKVVQEALDRIMVNRTTVI 576
+ +VV E + +I
Sbjct: 184 NRQVVVELIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-20
Identities = 62/218 (28%), Positives = 116/218 (53%), Gaps = 12/218 (5%)
Query: 393 YPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
+ P E + +G S+ I+ G ++G +G+GKST+++ I P +G++LIDG+++
Sbjct: 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT 71
Query: 452 EFQLQWIR-KKIGLVSQEPVLFTG---SIKDNIAYGKDDATTEEIRVATELANAAKF--- 504
+ R + V Q+P+ T +I++N+A + + A + F
Sbjct: 72 KKS-VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
+ +L G++ + + LSGGQ+Q +++ A L P+ILLLDE T+ALD ++ + V E
Sbjct: 131 LARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 565 LDRIMVNR--TTVIVAHRL-STVRNADMIAVIHRGKIV 599
+I+ TT++V H + + + + ++H GKIV
Sbjct: 191 TAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 2e-20
Identities = 63/230 (27%), Positives = 120/230 (52%), Gaps = 22/230 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I + +V SY + + S+ I G +++G +G+GKST++S++ R +GE+
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGK----DDATTEEIRVATEL 498
IDG+ L + + KK+ ++ QE + + +++D + +G+ T+E R +
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDR---RI 115
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD---- 554
N A I+ L ++ L + +LSGGQ+QR IA + +D +LLDE + LD
Sbjct: 116 INEA--IEYL--HLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHS 171
Query: 555 AESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
+ K+++ D + +T V+V H ++ +D I + GK+V++G+
Sbjct: 172 VQIMKILRRLADEL--GKTIVVVLHDINFASCYSDHIVALKNGKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 3e-20
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G I++ +VSF Y R D V +++NL + + VALVG +GSGKST+ SLL +Y G
Sbjct: 339 GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
I LDG + L LRQ + +V Q+PV+ DT AN+ G+ D +E ++ A E
Sbjct: 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALET 452
|
Length = 592 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 5e-20
Identities = 64/230 (27%), Positives = 119/230 (51%), Gaps = 14/230 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +++ YFS+ ++ ++ S ++ I G+ A+VG +G GK+++IS
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLIS------------A 662
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
++ ++ E IR + V Q +F ++++NI +G D + R A ++
Sbjct: 663 MLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESERYWR-AIDVTALQH 721
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQ 562
+D LP T +GE G +SGGQKQR+++ARA+ + I + D+ SALDA + +V
Sbjct: 722 DLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + +T V+V ++L + D I ++ G I E+GT ++L +
Sbjct: 782 SCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGS 831
|
Length = 1495 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 5e-20
Identities = 67/208 (32%), Positives = 108/208 (51%), Gaps = 34/208 (16%)
Query: 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGE------VLID---GINLKEFQLQWIRK 460
+ G TA + G+SG+GK+++I+ I PQ G VL D GI L + +
Sbjct: 23 AQGITA-IFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK-----R 76
Query: 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ--GIDTLVG 517
+IG V Q+ LF ++ N+ YG + A+F DK+ GI+ L+
Sbjct: 77 RIGYVFQDARLFPHYKVRGNLRYGMAKS------------MVAQF-DKIVALLGIEPLLD 123
Query: 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTV 575
+ LSGG+KQR+AI RA+L P +LL+DE ++LD ++ + L+R+ +N +
Sbjct: 124 RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPIL 183
Query: 576 IVAHRLSTV-RNADMIAVIHRGKIVEKG 602
V+H L + R AD + V+ +GK+ G
Sbjct: 184 YVSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 5e-20
Identities = 61/213 (28%), Positives = 110/213 (51%), Gaps = 22/213 (10%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQ 456
++ G S+SI G A+VG SGSGKST++ L+ +P +GEVL +G +L + +
Sbjct: 19 RVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERA 78
Query: 457 WIR-KKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKLP 509
+R KK+G + Q L + +N+A K +E A + ++K+
Sbjct: 79 KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER--------AYEMLEKV- 129
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
G++ + ++LSGG++QR+AIARA++ P ++L DE T LD + K++ + + +
Sbjct: 130 -GLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELN 188
Query: 570 VNRTT--VIVAHRLSTVRNADMIAVIHRGKIVE 600
T ++V H L + D + + G++
Sbjct: 189 RELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 6e-20
Identities = 38/100 (38%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 1041 GEIELHHVSFKYPSRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
GEIE+ ++S +Y PD+ V ++++ K++AG+ + +VG +G+GKST++ L RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
G I +DG++I + L+ LR + ++ Q+P LF+ TIR+N+
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 6e-20
Identities = 73/245 (29%), Positives = 119/245 (48%), Gaps = 40/245 (16%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKS-TVISLIERFYDPQA----GEVLIDGINL---K 451
+ + S+ I +G T ALVG+SGSGKS T +S++ P G++ G +L
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 452 EFQLQWIR-KKIGLVSQEPVLFTG---SIKDNIA--------YGKDDATTEEI----RVA 495
E L+ +R KI ++ QEP++ +++ + ++ A E + RV
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVG 142
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ AAK + P QLSGG++QR+ IA A+L P +L+ DE T+ALD
Sbjct: 143 --IRQAAKRLTDYPH-----------QLSGGERQRVMIAMALLTRPELLIADEPTTALDV 189
Query: 556 ESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L + +N + + H LS VR AD +AV+ G+ VE+ + L P
Sbjct: 190 SVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAPT 249
Query: 613 GAYSQ 617
Y+Q
Sbjct: 250 HPYTQ 254
|
Length = 529 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 7e-20
Identities = 36/103 (34%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL ++ + R V + ++L +R G+ +A++G SGSGKST++ L+ PD+G +
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
+DG +I L +L LR++MG++ Q LF+ T+ N+A+
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAF 100
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 8e-20
Identities = 72/249 (28%), Positives = 124/249 (49%), Gaps = 26/249 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++R V F+ R N IF S+++ G A++G SG GK+T++ LI P GE+
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 444 LIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA 499
L DG N + +L +RK++ ++ Q LFT ++ DN+AY E ++ L
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY----PLREHTQLPAPLL 120
Query: 500 NAAKFIDKLPQGIDTLVGEHG------TQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
++ + KL VG G ++LSGG +R A+ARAI +P +++ DE
Sbjct: 121 HSTVMM-KLEA-----VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 554 DAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
D + V+ + + + + T V+V+H + V + AD ++ KIV G+ L +
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQAN 234
Query: 611 PEGAYSQLI 619
P+ Q +
Sbjct: 235 PDPRVRQFL 243
|
Length = 269 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 9e-20
Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 23/234 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IEL++V + I S ++ G A+VG +G+GK+T++SL+ + P +G+V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 444 LIDGINLKEFQLQW-IRKKIGLVS---QEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
+ G + + + +RK+IGLVS E +++D + G + T
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 500 -NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
AA+++ +L G L LS G+++R+ IARA++KDP +L+LDE LD +
Sbjct: 149 LAAAQWLLEL-LGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 559 KVVQEALDRIMVNR---TTVIVAHRLSTVRNADMIAVIHR------GKIVEKGT 603
+ + L+ + + + V H ++ G++V +G
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHA-----EEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 1e-19
Identities = 60/223 (26%), Positives = 107/223 (47%), Gaps = 38/223 (17%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460
I G ++ G+ L+G +GSGKST++ L+ P AG V + G++L + +
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 461 KIGLVSQE-----PVLFTGSIKDNIAYGK-------------DDATTEEIRVATELANAA 502
++ LV Q+ P+ +++D +A G+ D A + TEL++ A
Sbjct: 76 RVALVEQDSDTAVPL----TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLA 131
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + TL SGG++QR+ +ARA+ ++P++LLLDE T+ LD ++
Sbjct: 132 D------RDMSTL--------SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 563 EALDRIMVNRTTVIVA-HRLS-TVRNADMIAVIHRGKIVEKGT 603
+ + TV+ A H L+ D + V+ G++V G
Sbjct: 178 ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.7 bits (223), Expect = 1e-19
Identities = 58/234 (24%), Positives = 108/234 (46%), Gaps = 25/234 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I ++ +S R ++ G S+ + G A++G +G+GKST++ + P +GEV
Sbjct: 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKD-----NIAYGKDDATTEEIRVATE 497
++G+ L + + + + ++ Q L F ++++ I + E+ R+A +
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR------AILKDPRILLLDEATS 551
A + L G LSGG++QR+ +AR + R L LDE TS
Sbjct: 119 ALAAT--------DLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170
Query: 552 ALD-AESEKVVQEALDRIMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
ALD A ++ A + V H L+ + AD I ++H+G+++ G+
Sbjct: 171 ALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
|
Length = 259 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 62/237 (26%), Positives = 113/237 (47%), Gaps = 31/237 (13%)
Query: 384 IELRDVYFSYPARPNEQ---IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
I+ ++V + Y + ++ + G ++G++GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 441 GEVLIDGINLKEFQLQW-IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVA 495
G+V +DG++ + + W IR K G+V Q P + +++++A+G ++ EEIR
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 496 TELA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ + ++ P LSGGQKQR+AIA + P ++ DE T+
Sbjct: 125 VDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 552 ALDAESEKVVQEALDRIM-VNR----TTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
LD + E ++ I +N+ T +++ H + AD I V+ GK+V +GT
Sbjct: 174 MLDPSGRR---EVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 41/229 (17%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S ++ G T A++G++GSGKST+ ++ +P +GE+LI+ L + K+I ++
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMI 92
Query: 466 SQE------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL--VG 517
Q+ P L G I D +R+ T+L + Q +TL VG
Sbjct: 93 FQDPNTSLNPRLRIGQILD-----------FPLRLNTDLEPEQ----RRKQIFETLRMVG 137
Query: 518 ---EHGT----QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+H L+ GQKQR+A+ARA++ P+I++ DEA ++LD ++ L +M+
Sbjct: 138 LLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS----MRSQLINLML 193
Query: 571 NR------TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + V + +++ +D + V+H G++VE+G+ + ++ P
Sbjct: 194 ELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPL 242
|
Length = 267 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 3e-19
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 3/83 (3%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
E+ ++SF+Y R +++L ++AG+ VALVG +GSGKST++ + P +G I
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQ 1126
+DG +I KL L+ LR+++G V Q
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 3e-19
Identities = 66/247 (26%), Positives = 109/247 (44%), Gaps = 38/247 (15%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---LIDGINLKEFQ 454
+ S + G +VG+SGSGKST++ + P G + G L+ +Q
Sbjct: 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQ 74
Query: 455 L------QWIRKKIGLVSQEP---VLFTGSIKDNIA----------YGKDDATTEEIRVA 495
L + +R + G V Q P + S NI YG AT ++
Sbjct: 75 LSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEE 134
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ ID LP SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 135 VEIDPTR--IDDLP-----------RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181
Query: 556 ESEKVVQEALDRIMVNR--TTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L ++ + +IV H L R A + V+ +G++VE G ++++DP+
Sbjct: 182 SVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQ 241
Query: 613 GAYSQLI 619
Y+QL+
Sbjct: 242 HPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 26/212 (12%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
++ S+ + G +G +G+GK+T + +I P +GE+ DG + ++
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQK--NIEAL 71
Query: 460 KKIGLVSQEPVLF---TG----SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
++IG + + P + T + + G +E+ L ++AK K
Sbjct: 72 RRIGALIEAPGFYPNLTARENLRLLARL-LGIRKKRIDEVLDVVGLKDSAK--KK----- 123
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
V S G KQR+ IA A+L +P +L+LDE T+ LD + K ++E + +
Sbjct: 124 ---VK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 573 TTVIVA-HRLSTVRN-ADMIAVIHRGKIVEKG 602
TV+++ H LS ++ AD I +I++GK++E+G
Sbjct: 177 ITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 92.2 bits (230), Expect = 4e-19
Identities = 37/107 (34%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123
LN + AG+ +ALVG SG+GK+++++ L F P G + ++G+E+++L + R+ +
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427
Query: 1124 VSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
V Q P L + T+R N+ G DA++ ++Q A E A +F+ L Q
Sbjct: 428 VGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQ 473
|
Length = 588 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 4e-19
Identities = 74/227 (32%), Positives = 120/227 (52%), Gaps = 24/227 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIRKKI 462
S + G T +LVG+SGSGKST + R + Q GE++ +G L +LQ +R+ I
Sbjct: 344 SFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI 403
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN--AAKFIDKLPQGIDTLVGEHG 520
+ Q+P S+ G D+ E +RV L AA + L + + L+ EH
Sbjct: 404 QFIFQDPY---ASLDPRQTVG--DSIMEPLRVHGLLPGKAAAARVAWLLERVG-LLPEHA 457
Query: 521 ----TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQEALDRIMVNRTTV 575
+ SGGQ+QRI IARA+ +P++++ DEA SALD +++ LD + R
Sbjct: 458 WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD---LQRDFG 514
Query: 576 I----VAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
I ++H ++ V R + +AV++ G+IVE G + E+P+ Y++
Sbjct: 515 IAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561
|
Length = 623 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 6e-19
Identities = 56/222 (25%), Positives = 113/222 (50%), Gaps = 17/222 (7%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWI 458
++ + S+ ++SG L+G +G+GK+T +I P +G++L+D ++ + + +
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ--GIDTL 515
R IG + QE +F +++DNI A E + A + +D L + I L
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNI-----MAVLEIREKDLKKAERKEELDALLEEFHITHL 132
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESEKVVQEALDRIMVN 571
LSGG+++R+ IARA+ +P+ +LLDE + +D + +++++ DR
Sbjct: 133 RDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR---G 189
Query: 572 RTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+I H + T+ D +I GK++ +G+ ++V + +
Sbjct: 190 IGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNED 231
|
Length = 243 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 6e-19
Identities = 53/208 (25%), Positives = 98/208 (47%), Gaps = 16/208 (7%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
S S+ G L+G +G+GK+T I +I P +GEVL DG K + R
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG---KPLDIA-AR 69
Query: 460 KKIGLVSQEPVLFTG-SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLV 516
+IG + +E L+ + D + Y EE R +++++L +
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYA 122
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
+ +LS G +Q++ A++ DP +L+LDE S LD + +++++ + + TVI
Sbjct: 123 NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVI 182
Query: 577 -VAHRLSTV-RNADMIAVIHRGKIVEKG 602
H++ V D + ++++G+ V G
Sbjct: 183 LSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 7e-19
Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 10/119 (8%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+E+ +VS Y V D++L + G+ VALVG SG GKST++ ++ P +G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYG---KGGDATEAEIQAAS 1156
+ +DG + G V Q+ L T+ N+A G +G EA +A
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEE 114
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.8 bits (217), Expect = 7e-19
Identities = 62/223 (27%), Positives = 113/223 (50%), Gaps = 7/223 (3%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF 453
+ + S+ + +L+G +GSGK+T + + R D +G+VL+ G ++ +
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 454 Q-LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
+ + R+++G++ Q P F SI DN+ G + +A A L +
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAV 153
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+ + +LSGGQ+Q + +AR + +P +LLLDE TSALD + + ++E + +
Sbjct: 154 KDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRL 213
Query: 573 TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
T +IV H L+ R +D A+ G++VE+G +L P+ A
Sbjct: 214 TVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHA 256
|
Length = 276 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-18
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 1043 IELHHVSFKYP--SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+E+ +VSF+YP P V R+++ I G+++A++G SGSGKST+ L+ P +G
Sbjct: 1 LEVENVSFRYPGAEPP---VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG 57
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+ LDG +I + L +G + Q+ LF+ +I NI
Sbjct: 58 RVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI 96
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 1e-18
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++SF Y +P + DL+ I G+ ++G +GSGKST++ L P +G +
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRANIAYGK---------GGDATEAEI 1152
LDG +I L K L +++ V Q P F T+ + G+ E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 1153 QAASEMANAHKFI 1165
+ A E+
Sbjct: 120 EEALELLGLEHLA 132
|
Length = 258 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 57/186 (30%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ +Y Y +P ++++ SG ++G SG GK+T+++LI F Q G +
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQ-EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+DG ++ + G+V Q E +L +++DN+A+G A E+ L A
Sbjct: 59 TLDGKPVEGPGAER-----GVVFQNEGLLPWRNVQDNVAFGLQLAGVEK---MQRLEIAH 110
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ + K+ G++ + QLSGGQ+QR+ IARA+ +P++LLLDE ALDA + + +Q
Sbjct: 111 QMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ 168
Query: 563 EALDRI 568
L ++
Sbjct: 169 TLLLKL 174
|
Length = 255 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 1e-18
Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 33/222 (14%)
Query: 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445
L V Y R + + + I +G A+VG+SG GKST++ L+ P AGE+L
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 446 DGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYG-----KDDATTEEIRVATELA 499
L E R+ L+ Q+ L + DN+ G +D A + A LA
Sbjct: 72 GTAPLAE-----AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAA--LQALAAVGLA 124
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+ A E LSGGQKQR+A+ARA++ P +LLLDE ALDA +
Sbjct: 125 DRA--------------NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRI 170
Query: 560 VVQEALDRIMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKI 598
+Q+ ++ + T ++V H +S V AD + +I GKI
Sbjct: 171 EMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 61/219 (27%), Positives = 106/219 (48%), Gaps = 33/219 (15%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
F +++ G A++G SG+GKST+++LI F P +G + ++G + R+ + +
Sbjct: 18 FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSM 75
Query: 465 VSQEPVLFTG-SIKDNIAYGKD---------DATTEEI--RVATELANAAKFIDKLPQGI 512
+ QE LF+ ++ NI G + I ++ E + +LP
Sbjct: 76 LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-----DLLARLP--- 127
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
QLSGGQ+QR+A+AR ++++ ILLLDE SALD + + + ++ R
Sbjct: 128 --------GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER 179
Query: 573 --TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLV 608
T ++V+H L R A V+ G+I G +L+
Sbjct: 180 QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
|
Length = 232 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 23/232 (9%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKST---VISLIERFYDPQAG 441
E++D++ ++I G ++++ G A++G +GSGKST I + Y+ G
Sbjct: 5 EIKDLHVE--VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEG 61
Query: 442 EVLIDGINLKEFQL-QWIRKKIGLVSQEPVLFTG-SIKD------NIAYGKDDATTEEIR 493
E+L DG ++ E + R I L Q PV G + D N G E I+
Sbjct: 62 EILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIK 121
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
E A ++ ++ V E SGG+K+R I + +L +P++ +LDE S L
Sbjct: 122 ELKEKAELLGLDEEF---LERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEPDSGL 175
Query: 554 DAESEKVVQEALDRIM-VNRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
D ++ K+V E ++ + R +I+ H RL D + V++ G+IV+ G
Sbjct: 176 DIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (215), Expect = 2e-18
Identities = 68/246 (27%), Positives = 127/246 (51%), Gaps = 32/246 (13%)
Query: 384 IELRDVYFSYPARPNEQIFS----GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
I+ V ++Y +PN S + + G+ AL+G +GSGKST++ + P
Sbjct: 2 IKFEKVNYTY--QPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT 59
Query: 440 AGEVLIDGINL----KEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD---ATTE 490
G+V + I + K+ +++ +RKK+G+V Q P LF ++ ++A+G + +
Sbjct: 60 EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 491 EIRVATE----LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
++A E + A +F +K P +LSGGQ +R+AIA + +P +L+L
Sbjct: 120 AEKIAAEKLEMVGLADEFWEKSP-----------FELSGGQMRRVAIAGILAMEPEVLVL 168
Query: 547 DEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604
DE T+ LD ++ + + + I +T V+V H + V + AD + ++ +G I+ GT
Sbjct: 169 DEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTP 228
Query: 605 SKLVED 610
S + ++
Sbjct: 229 SDVFQE 234
|
Length = 288 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-18
Identities = 64/233 (27%), Positives = 112/233 (48%), Gaps = 33/233 (14%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457
+ + S+++ + L+G +G+GKST++ +I P +GE++ DG W
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPW 64
Query: 458 IRK---KIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKL 508
RK KIG + + P L+ + ++N+ G D+ +E+ +L N K
Sbjct: 65 TRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTN----TGKK 120
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
Q S G KQR+ IA A+L P++L+LDE T+ LD + ++E +
Sbjct: 121 KAK----------QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSF 170
Query: 569 MVNRTTVIV-AHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
TVI+ +H LS V+ AD I +I G + +G +K E+ E + +++
Sbjct: 171 PEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK-SENLEKLFVEVV 222
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 83.2 bits (207), Expect = 3e-18
Identities = 28/103 (27%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S +Y + D++L + G+ L+G +G+GK+T++ ++ PD+G I
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKG 1144
+ G +I+K + +++++G + +EP L+ + T+R N+ G
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEPSLYENLTVRENLKLSGG 99
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-18
Identities = 62/212 (29%), Positives = 99/212 (46%), Gaps = 22/212 (10%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKEFQLQW 457
I G + + G T A+VG SGSGKST+++++ DP +GEV + G L E
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 458 IR-KKIGLVSQEPVLF-TGSIKDNIAYG---KDDATTEEIRVATELANAAKFIDKLPQGI 512
+R + +G V Q L + +N+A + +++ + A L A G+
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAV--------GL 136
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
+ + QLSGG++QR+A+ARA P +L DE T LD + + + L +NR
Sbjct: 137 GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL--FALNR 194
Query: 573 ----TTVIVAHRLSTVRNADMIAVIHRGKIVE 600
T V+V H D + G++VE
Sbjct: 195 ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 3e-18
Identities = 71/235 (30%), Positives = 123/235 (52%), Gaps = 23/235 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L V SY + + +G S +++SG L+G +G+GKST+ +I P AG++
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDN-IAYGKD-DATTEEIR-VATE 497
+ G+ + + + R +IG+V Q L FT +++N + +G+ +T EI V
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFT--VRENLLVFGRYFGMSTREIEAVIPS 155
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L A+ K D V + LSGG K+R+ +ARA++ DP++L+LDE T+ LD +
Sbjct: 156 LLEFARLESK----ADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 207
Query: 558 EKVVQEALDRIMV-NRTTVIVAHRLSTV-RNADMIAVIHRG-KIVEKGTHSKLVE 609
++ E L ++ +T ++ H + R D + V+ G KI E H+ + E
Sbjct: 208 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
|
Length = 340 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 3e-18
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 30/228 (13%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI- 458
Q G S+ + G AL+G++G+GK+T++ I P++G ++ DG ++
Sbjct: 17 QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERA 76
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE-IRVATELANAAKFIDKLPQGIDTLV- 516
R I V + +F T EE + + + ++ + + L
Sbjct: 77 RLGIAYVPEGRRIFP------------RLTVEENLLLGAYARRDKEAQERDLEEVYELFP 124
Query: 517 ------GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-M 569
+ LSGG++Q +AIARA++ P++LLLDE + L + K+V+E + I
Sbjct: 125 RLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIKE 181
Query: 570 VNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + T ++V AD V+ G+IV GT ++L+ DP+
Sbjct: 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229
|
Length = 237 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-18
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 4/90 (4%)
Query: 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+E+ ++S +P+ V+ D++ I+ G+T+ LVGESGSGKST+ + P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEP 1128
I DG ++ KL K R+++ +V Q+P
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 4e-18
Identities = 76/246 (30%), Positives = 111/246 (45%), Gaps = 46/246 (18%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--------LIDGINLKEF 453
S + G +VG+SGSGK+T+++ + P AGEV L D L E
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 454 QLQWI-RKKIGLVSQEP---VLFTGSIKDNIA----------YGKDDATTEEIRVATELA 499
+ + + R + G V Q P + S NI YG AT + E+
Sbjct: 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEID 141
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
A ID LP T SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 142 --AARIDDLP-----------TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS--- 185
Query: 560 VVQ-EALD--RIMVNR---TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
VQ LD R +V VIV H L+ R A + V+ +G++VE G ++++DP+
Sbjct: 186 -VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQ 244
Query: 613 GAYSQL 618
Y+QL
Sbjct: 245 HPYTQL 250
|
Length = 258 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-18
Identities = 59/228 (25%), Positives = 113/228 (49%), Gaps = 27/228 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-Q 456
++ +G S+S+ G L+G +G+GK+T +I P +G++L+DG ++ + + +
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 457 WIRKKIGLVSQEPVLFTG-SIKDNIA-----YGKDDATTEEIRVATELANAAKFIDKLPQ 510
R IG + QE +F ++++NI G EE +++
Sbjct: 72 RARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEE--------LLEEF-- 121
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESEKVVQEALD 566
I L + LSGG+++R+ IARA+ +P+ LLLDE + +D + +K+++ D
Sbjct: 122 HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181
Query: 567 R-IMVNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDPE 612
R I V +I H + T+ D +I+ GK++ +GT ++ +
Sbjct: 182 RGIGV----LITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANEL 225
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 4e-18
Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEF 453
P + + + +I+ G L+G SG GKST++S + Q GE+ ++ L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD-- 70
Query: 454 QLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
L +++IG++ Q+ +LF S+ N+ + R ANAA +++ G+
Sbjct: 71 MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNAR--RNAANAA--LERS--GL 124
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
D + LSGGQ+ R+A+ RA+L P+ LLLDE S LD
Sbjct: 125 DGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 5e-18
Identities = 35/100 (35%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G +EL +++F Y S + + + +L ++ G+ VALVG SGSGKST+ L+ Y P +G
Sbjct: 476 GYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140
I DG+ +++ + L + +V Q+ LF T+R N+
Sbjct: 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT 574
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 5e-18
Identities = 64/198 (32%), Positives = 94/198 (47%), Gaps = 49/198 (24%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--------FQ- 454
G +++I G +L+G SG GKST+++LI P +G V+++G + E FQ
Sbjct: 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQN 62
Query: 455 ---LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD----DATTEE----IRVATELANAAK 503
L W+ ++++NIA D D + E + L +
Sbjct: 63 YSLLPWL----------------TVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTE 106
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
DK P QLSGG KQR+AIARA+ P++LLLDE ALDA + +QE
Sbjct: 107 AADKRP-----------GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE 155
Query: 564 ALDRIMV-NRTTVI-VAH 579
L +I +R TV+ V H
Sbjct: 156 ELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 5e-18
Identities = 66/257 (25%), Positives = 123/257 (47%), Gaps = 28/257 (10%)
Query: 380 IRGDIELR--DVYFSYPARPNEQI--FSGFSISISSGTTAALVGQSGSGKSTVIS----- 430
+ DI LR ++Y + + ++ + S + ++G SGSGKST+++
Sbjct: 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQW-----------IRKKIGLVSQEP--VLFTGSIK 477
+ ++ Q G++ I + +R+++ +V Q P LF +I+
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537
+I +G ++ A +LA +++K+ D+ + LSGGQK+R+AIA +
Sbjct: 136 KDIMFGPVALGVKKSE-AKKLA--KFYLNKMGLD-DSYLERSPFGLSGGQKRRVAIAGIL 191
Query: 538 LKDPRILLLDEATSALDAESEK-VVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR 595
P IL+ DE T+ LD + E ++Q LD N+T ++ H + V AD + V+ +
Sbjct: 192 AIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDK 251
Query: 596 GKIVEKGTHSKLVEDPE 612
GKI++ GT ++ D
Sbjct: 252 GKILKTGTPYEIFTDQH 268
|
Length = 320 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 6e-18
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 25/215 (11%)
Query: 376 ILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF 435
D+ I L ++ P + + S + + G + G+SG+GK++++ +
Sbjct: 385 FDDNADHGITLENLSLRTPD--GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL 442
Query: 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY--GKDDATTEEIR 493
+ +G + + + F + Q P L G++++ + Y D + E+
Sbjct: 443 WPWGSGRISMPADSALLF-----------LPQRPYLPQGTLREALCYPNAAPDFSDAELV 491
Query: 494 VATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
++L + V LSGG++QR+A AR +L P+ + LDEATSA
Sbjct: 492 AVLHKVGLGDLAERLDEEDRWDRV------LSGGEQQRLAFARLLLHKPKWVFLDEATSA 545
Query: 553 LDAESEKVVQEALDRIMVNRTTVI-VAHRLSTVRN 586
LD E+E + + L + TVI V HR T+ N
Sbjct: 546 LDEETEDRLYQLLKE-ELPDATVISVGHR-PTLWN 578
|
Length = 604 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 8e-18
Identities = 40/101 (39%), Positives = 64/101 (63%), Gaps = 3/101 (2%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
EIE VS+ S ++ +D+++K G +VG SG+GKST++ L+ R DP G
Sbjct: 3 EIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
I +DGV+I+ + + LR+++G+V Q+P LF T++ NI YG
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG 100
|
Length = 241 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 8e-18
Identities = 63/188 (33%), Positives = 103/188 (54%), Gaps = 19/188 (10%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN---LKEFQLQ 456
Q G + + G A L G SG+GKST++ LI P AG++ G + LK ++
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 457 WIRKKIGLVSQEP-VLFTGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGID 513
++R++IG++ Q+ +L ++ DN+A A+ ++IR A +DK+ G+
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAA-----LDKV--GLL 128
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD-AESEKVVQ--EALDRIMV 570
QLSGG++QR+ IARA++ P +LL DE T LD A SE +++ E +R+ V
Sbjct: 129 DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV 188
Query: 571 NRTTVIVA 578
TV++A
Sbjct: 189 ---TVLMA 193
|
Length = 222 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 81.7 bits (203), Expect = 1e-17
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
E+ ++S Y R V DL+L I AG+ V ++G +G+GKST++ L P +G I
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQ 1126
LDG ++ L K L +++ V Q
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-17
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 28/217 (12%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-LKEFQLQWIRKKI 462
G S + G L+G +G+GK+T I ++ P +G + G + ++E + +R++I
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE--PREVRRRI 75
Query: 463 GLVSQEPVL---FTGSIKDNIA-----YG-KDDATTEEIRVATELANAAKFIDKLPQGID 513
G+V Q+ + TG +N+ YG E I + + D+L
Sbjct: 76 GIVFQDLSVDDELTG--WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRL----- 128
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VN 571
V + SGG ++R+ IAR+++ P +L LDE T LD ++ V E ++++
Sbjct: 129 --VKTY----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG 182
Query: 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607
T ++ H + D +A+I G+I+ +GT +L
Sbjct: 183 MTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 4e-17
Identities = 68/223 (30%), Positives = 115/223 (51%), Gaps = 12/223 (5%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+EL+D+ SYP+ + ++ G S+ I +G A+VG SGSGKST+++++ P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 443 VLIDGINLKEF---QLQWIRKK-IGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATE 497
+ G ++ L +R++ G + Q L + + N+ A E
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER---KQR 121
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L A + + +L G++ V +QLSGGQ+QR++IARA++ +++L DE T ALD+ S
Sbjct: 122 LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179
Query: 558 EKVVQEALDRIMVNRTTVI-VAHRLSTVRNADMIAVIHRGKIV 599
+ V L ++ TVI V H A+ + I G+IV
Sbjct: 180 GEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 6e-17
Identities = 61/226 (26%), Positives = 104/226 (46%), Gaps = 24/226 (10%)
Query: 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447
D++F Y +E + G ++ S LVG +G GKST+ + PQ G VL G
Sbjct: 6 DLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 448 --INLKEFQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
++ + L +R+++ V Q+P +F I +IA+ + E + + A
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122
Query: 504 FIDKLPQGIDTLVGEHGTQ-----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+D +H LS GQK+R+AIA A++ R LLLDE T+ LD
Sbjct: 123 LVD----------AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
Query: 559 KVVQEALDRIMVN-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ + RI+ +I +H + + +D + V+ +G+I+ G
Sbjct: 173 TQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 7e-17
Identities = 37/100 (37%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VS +Y ++ D+NL I G+ + L+G SGSGK+T + ++ R +P +G I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
+DG +I L LR+++G V Q+ LF + T+ NIA
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT 98
|
Length = 309 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 7e-17
Identities = 72/248 (29%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---LIDGINLKEFQL--- 455
S + G +VG+SGSGK+T++ I P AG V + DG + +
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 456 ---QWIRKKIGLVSQEP---VLFTGSIKDNIA----------YGKDDATTEEI--RVATE 497
+ +R + G V Q P + S NI YG A ++ V +
Sbjct: 82 ERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEID 141
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L ID LP SGG +QR+ IAR ++ PR++ +DE T LD
Sbjct: 142 LDR----IDDLP-----------RTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS- 185
Query: 558 EKVVQEALD--RIMVNR---TTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611
V LD R +V VIV H L+ R AD + V+ +G++VE G ++++DP
Sbjct: 186 --VQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDP 243
Query: 612 EGAYSQLI 619
Y+QL+
Sbjct: 244 HHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 8e-17
Identities = 33/105 (31%), Positives = 60/105 (57%), Gaps = 6/105 (5%)
Query: 1043 IELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
IEL +VS + V D++L+I G+ ++G SG+GKST++ L+ P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1101 HITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
+ +DG ++ L +L+ LRQ++G++ Q L + T+ N+A+
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAF 106
|
Length = 339 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 9e-17
Identities = 69/243 (28%), Positives = 119/243 (48%), Gaps = 43/243 (17%)
Query: 406 SISISSGTTAALVGQSGSGKS-TVISLIERFYDPQAGEVLIDG----------INLKEF- 453
S S+ G T A+VG+SGSGKS T ++L+ R + G V D I L E
Sbjct: 36 SFSLQRGETLAIVGESGSGKSVTALALM-RLLEQAGGLVQCDKMLLRRRSRQVIELSEQS 94
Query: 454 --QLQWIR-KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV------ATELANAAKF 504
Q++ +R + ++ QEP+ S+ G+ A E IR+ + A +
Sbjct: 95 AAQMRHVRGADMAMIFQEPMT---SLNPVFTVGEQIA--ESIRLHQGASREEAMVEAKRM 149
Query: 505 ID--KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE---- 558
+D ++P+ T++ + QLSGG +QR+ IA A+ P +L+ DE T+ALD +
Sbjct: 150 LDQVRIPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQIL 208
Query: 559 ---KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGA 614
KV+Q+ + + + H + V AD + V+++G+ VE G+ ++ P+
Sbjct: 209 QLIKVLQKEMS-----MGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHP 263
Query: 615 YSQ 617
Y++
Sbjct: 264 YTR 266
|
Length = 623 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-16
Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 27/236 (11%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF---QLQWIR 459
S ++ G T LVG+SGSGKST + R + Q GE+ DG L QL +R
Sbjct: 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVR 361
Query: 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA----KFIDKLPQ-GID- 513
+I +V Q+P S+ N E +RV +AA + I + + G+D
Sbjct: 362 HRIQVVFQDP---NSSL--NPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP 416
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE---ALDRIMV 570
+ + SGGQ+QRIAIARA++ P +++LDE TS+LD K VQ AL + +
Sbjct: 417 ETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQILALLKSLQ 472
Query: 571 NR---TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS-QLIRL 621
+ + ++H L VR + V+ +G++VE+G ++ P+ Y+ QL+ L
Sbjct: 473 QKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTRQLLAL 528
|
Length = 529 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-16
Identities = 66/240 (27%), Positives = 116/240 (48%), Gaps = 28/240 (11%)
Query: 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445
LR+V F P R + S++ +G L+G +GSGKST++ ++ R P GE+L+
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 446 DGINLKEFQLQWIRKKIGLVSQE-PVLFTGSIKDNIAYGK----------DDATTEEIRV 494
D L+ + + +K+ + Q+ P ++++ +A G+ A E++
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
A L +L +D+L SGG++QR IA + +D R LLLDE TSALD
Sbjct: 131 AISLVGLKPLAHRL---VDSL--------SGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 555 AESEKVVQEALDRIMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
+ V + R+ R T + V H ++ R D + + G+++ +GT ++L+
Sbjct: 180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
|
Length = 265 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 35/91 (38%), Positives = 58/91 (63%), Gaps = 5/91 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S YP+ + +D++L I G+ VAL+G SG+GKST++ L +P +G +
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 1103 TLDGVEIQKLQLKWLRQ---QMGLVSQEPVL 1130
+DG +I KL+ K LRQ Q+G++ Q+ L
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNL 89
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-16
Identities = 66/229 (28%), Positives = 115/229 (50%), Gaps = 23/229 (10%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-KEFQLQW--IRK 460
G ++ + G T +VG+SG GKST I GEV G +L +W +R
Sbjct: 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRS 98
Query: 461 KIGLVSQEPVLFTG---SIKDNIA-----YGKDDATTEEIRVATELANAAKFIDKLPQGI 512
I ++ Q+P+ +I + IA Y + +E++ + + LP
Sbjct: 99 DIQMIFQDPLASLNPRMTIGEIIAEPLRTY-HPKLSRQEVK--DRVKAMMLKVGLLPN-- 153
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE-KVVQ--EALDRIM 569
L+ + + SGGQ QRI IARA++ +P++++ DE SALD + +VV + L R M
Sbjct: 154 --LINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM 211
Query: 570 VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+ + +AH L+ V++ +D + V++ G VE GT+ ++ +P Y++
Sbjct: 212 -GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
|
Length = 331 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 55/209 (26%), Positives = 94/209 (44%), Gaps = 41/209 (19%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQW 457
+I G +++I G AL+G +GSGKST+ I Y+ GE+L G ++ + +
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEE 73
Query: 458 I-RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
R I L Q P G ++ A L V
Sbjct: 74 RARLGIFLAFQYPPEIPG-----------------VKNADFLRY---------------V 101
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTV 575
E SGG+K+R I + +L +P + +LDE S LD ++ ++V E ++++ ++ +
Sbjct: 102 NE---GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVL 158
Query: 576 IVAH--RLSTVRNADMIAVIHRGKIVEKG 602
I+ H RL D + V++ G+IV+ G
Sbjct: 159 IITHYQRLLDYIKPDRVHVLYDGRIVKSG 187
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-16
Identities = 49/171 (28%), Positives = 82/171 (47%), Gaps = 11/171 (6%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
R +FSG S ++++G + G +GSGK+T++ ++ P AG VL++G L +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
R + L + T S+ +N+ + D + E++ A F D P
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFED-RPVA--- 124
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
QLS GQ++R+A+AR +L + +LDE T+ALD EA+
Sbjct: 125 -------QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 3e-16
Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ V+ + R + ++L + G+ +A++G SGSGKST++ L+ PD G I
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
+DG +I +L +L +R++MG++ Q+ LF+ T+ N+A+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF 108
|
Length = 263 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 84.2 bits (208), Expect = 3e-16
Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 5/130 (3%)
Query: 1040 KGEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098
+G +E + +Y R D+ V R +N+ I G+ V +VG +G+GKS++ L R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 1099 AGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
G I +DG+ I K+ L LR ++ ++ Q+PVLF+ ++R N+ ++ E+ A E+
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNL--DPFSQYSDEEVWWALEL 1397
Query: 1159 ANAHKFICSL 1168
A+ F+ +L
Sbjct: 1398 AHLKTFVSAL 1407
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 67/226 (29%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 402 FSGF------SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLK 451
F GF S S+ G L+G +G+GK+T++ +I PQ GEVL DG L
Sbjct: 15 FGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLP 74
Query: 452 EFQLQWIRKKIGLVSQEPVLFTG-SIKDN--IAYGKDDATTEEIRVATELANAAKFIDKL 508
E ++ R IG Q+P +F ++++N +A +D + + + + L
Sbjct: 75 EHRI--ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELL 132
Query: 509 PQ-GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALD 566
G+ LS GQKQ + I + +DP++LLLDE + + DAE+EK E L
Sbjct: 133 ATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTA-ELLK 191
Query: 567 RIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + ++V H + VR AD + V+H G ++ +G+ ++ DP
Sbjct: 192 SLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 27/232 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ D+ + + G +S+ G+ LVG +G+GK+T++ I P AG V
Sbjct: 4 IDVSDLSVEFGDTT---VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYGK----------DDATTEEI 492
L+ G +++ + +++ V Q+ L F ++ + G+ + +
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A E A+F D + + +L SGG++QR+ +ARA+ + +LLLDE T++
Sbjct: 121 ERAMERTGVAQFAD---RPVTSL--------SGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 553 LDAESEKVVQEALDRIMVNRTTVIVA-HRLS-TVRNADMIAVIHRGKIVEKG 602
LD + E + R++ + T + A H L R D + ++ G++ G
Sbjct: 170 LDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
|
Length = 402 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 4e-16
Identities = 38/120 (31%), Positives = 64/120 (53%), Gaps = 8/120 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +S Y S V+ DL+L + G+ +AL+G SG GK+T++ L+ PD+G I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG--KGGDATEAEIQAASEMA 1159
+DG ++ + + R+ +G+V Q+ LF + T+ NIA+G G E+
Sbjct: 58 LIDGRDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V+ +Y + +LNL+I G+ + L+G SGSGK+T + ++ R +P +G I
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIA 1140
+DG +I++ LR+++G V Q+ LF + T+ NIA
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIA 97
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 4e-16
Identities = 66/228 (28%), Positives = 111/228 (48%), Gaps = 29/228 (12%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-------DGINLKEFQLQWI 458
S+ I G L+G SGSGKST++ + G VL+ D N L+ +
Sbjct: 44 SLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRL 103
Query: 459 R-KKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVATELANAAKFIDKLPQ 510
R ++ +V Q+ L ++++N+A+G + + EL A++ D+ P
Sbjct: 104 RTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKP- 162
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM- 569
GE LSGG +QR+ +ARA + ILL+DE SALD +Q+ L +
Sbjct: 163 ------GE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQS 212
Query: 570 -VNRTTVIVAHRL-STVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ +T V V+H L ++ + IA++ G+I++ GT ++V +P Y
Sbjct: 213 KLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDY 260
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 5e-16
Identities = 35/102 (34%), Positives = 63/102 (61%), Gaps = 3/102 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I++ +VSF YP+ + ++++ +I G+ VA++G +GSGKST+ +L P +G I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+DG+ I K LK +R+++G++ Q P T+ +IA+G
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG 108
|
Length = 271 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 10/116 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++ + V + ++L ++ G+ V ++G SGSGKST++ + +PD+G I
Sbjct: 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 1103 TLDGVEI--QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAE 1151
+DG+++ K + LRQ++G+V Q+ LF + T+ NI KG EAE
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE 113
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 5e-16
Identities = 68/235 (28%), Positives = 112/235 (47%), Gaps = 36/235 (15%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ LR+V +Y + I ++ I G VG SG GKST++ +I D +G+
Sbjct: 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTE--EI--RV--A 495
+ I + + + + +G+V Q L+ S+ +N+++G A + EI RV
Sbjct: 60 LFIGEKRMND--VPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ A +D+ P+ LSGGQ+QR+AI R ++ +P + LLDE S LDA
Sbjct: 118 AEVLQLAHLLDRKPKA-----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 166
Query: 556 ESEKVVQEALDRIMV-------NRTTVIVAH-RLSTVRNADMIAVIHRGKIVEKG 602
VQ RI + RT + V H ++ + AD I V+ G++ + G
Sbjct: 167 ALR--VQM---RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 6e-16
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 33/189 (17%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E +V Y + S I G A+VG +G+GKST++ L+ P +G V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQE--PVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
+ G +K IG Q + ++ + ++ G D +E+R A
Sbjct: 380 KV-GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVR-----AYL 423
Query: 502 AKFIDKLPQGIDTLVGEHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+F GE + LSGG+K R+ +A+ +L+ P +LLLDE T+ LD ES
Sbjct: 424 GRFG---------FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 558 EKVVQEALD 566
+ ++EAL
Sbjct: 475 LEALEEALL 483
|
Length = 530 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (194), Expect = 6e-16
Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 43/227 (18%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
++ I G A++G +G GKST++ + R P G V +DG +++ + + + ++IGL
Sbjct: 26 LTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85
Query: 465 VSQEPVLFTGSI--KDNIAYGK--------------DDATTEEIRVA--TELANAAKFID 506
++Q G I ++ +A G+ ++A T+ ++ T LA+
Sbjct: 86 LAQNATT-PGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLAD------ 138
Query: 507 KLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD 566
Q +DT LSGGQ+QR IA + ++ I+LLDE T+ LD + + E L
Sbjct: 139 ---QSVDT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLS 187
Query: 567 RIMVNR----TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLV 608
+ NR T V H L+ R A + + GKIV +G ++V
Sbjct: 188 EL--NREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIV 232
|
Length = 265 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 7e-16
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 5/103 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE ++SF+YP +D++L+I G+ V L+G +GSGKST++ LL P +G +
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 1103 TLDGVEIQKLQLKW-LRQQMGLVSQEPV--LFNDTIRANIAYG 1142
+DG++ + LRQ++GLV Q P LF T+ +A+G
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG 104
|
Length = 235 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-15
Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
K +E+ +VS + D D++L I+ G+ V L+G SG GK+T++ ++ F P +
Sbjct: 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYGK--GGDATEAEI-QAA 1155
G I LDG +I + + ++ +G+V Q LF + T+ N+A+G +AEI
Sbjct: 60 GEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 1156 SEM 1158
E
Sbjct: 118 EEA 120
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 36/94 (38%), Positives = 58/94 (61%), Gaps = 5/94 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S YP Q +D+NL+I G+ VA++G SG+GKST++ L DP +G I
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND 1133
+GV+I KL +L+ LR+ +G++ Q+ L
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPR 95
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 1e-15
Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 16/220 (7%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-------LIDGINLKEFQLQ 456
S+ + G +VG SG+GK+T+ +I +P +GEV +D
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 457 WIRKKIGLVSQEPVLFT-GSIKDNI--AYGKDDATTEEIRVATELANAAKFIDKLPQGID 513
++ IG++ QE L+ ++ DN+ A G + A F ++ + I
Sbjct: 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEI- 420
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL--DRIMVN 571
+ ++ +LS G++ R+A+A+ ++K+PRI++LDE T +D ++ V ++ R +
Sbjct: 421 --LDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEME 478
Query: 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
+T +IV+H + V + D A++ GKIV+ G ++VE+
Sbjct: 479 QTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 72/272 (26%), Positives = 135/272 (49%), Gaps = 26/272 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L V SY ++ + + S +I+ G L+G +G+GKST+ ++ P G++
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNI-AYGKD-DATTEEIR-VATE 497
+ G + + + R IG+V Q L FT +++N+ +G+ +T EI V
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFT--VRENLLVFGRYFGMSTREIEAVIPS 118
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L A+ K D V LSGG K+R+ +ARA++ DP++L+LDE T+ LD +
Sbjct: 119 LLEFARLESK----ADVRV----ALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHA 170
Query: 558 EKVVQEALDRIMV-NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++ E L ++ +T ++ H + R D + V+ G+ + +G L+++ G
Sbjct: 171 RHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGC- 229
Query: 616 SQLIRLQEANKESEQTIDG--QRKSEISMESL 645
+I + + + + + R+ E+S E+L
Sbjct: 230 -NVIEIYGGDPDELRELIRPYARRIEVSGETL 260
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-15
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 9/122 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +++ KY D ++ ++ G+ L+G +G+GK+T++ +L P +G I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI-----AYGKGGDATEAEIQAAS 1156
+ G ++ K + +R+++G V QEP L+ + T+R N+ YG + E I+
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 1157 EM 1158
E+
Sbjct: 122 EL 123
|
Length = 293 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-15
Identities = 55/181 (30%), Positives = 93/181 (51%), Gaps = 26/181 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L+ V SY Q+ G + ++ G LVG SG GKST++ ++ +GE+
Sbjct: 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELAN 500
I G +N +L+ + I +V Q L+ S+++N+AYG + + +A
Sbjct: 62 WIGGRVVN----ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAE 117
Query: 501 AAK------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554
AA+ +D+ P+ +LSGGQ+QR+A+ RAI+++P + L DE S LD
Sbjct: 118 AARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
Query: 555 A 555
A
Sbjct: 167 A 167
|
Length = 356 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 3e-15
Identities = 68/262 (25%), Positives = 115/262 (43%), Gaps = 49/262 (18%)
Query: 384 IELRDVYFSYPAR-PNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I+++++ + + P E + S+ I+ G A++GQ+GSGK+T I + P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 442 EVLI----DGINLKEFQLQW--------------------IRKKIGLVSQ--EPVLFTGS 475
+ + K + + IR+++G+V Q E LF +
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVG--EHGTQ-----LSGGQK 528
I+ +I +G + + AAK+I+ LVG E Q LSGGQK
Sbjct: 123 IEKDIIFG---PVSMGVSKEEAKKRAAKYIE--------LVGLDESYLQRSPFELSGGQK 171
Query: 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTTVIVAHRLSTV-RN 586
+R+A+A + +P L+ DE T+ LD + K + E D + +T ++V H L V
Sbjct: 172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231
Query: 587 ADMIAVIHRGKIVEKG-THSKL 607
GKI++ G T+ L
Sbjct: 232 TKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 31/216 (14%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIG 463
S + +G LVG +G+GKST+++ + P +G + G L+ + + R +
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 464 LVSQEPVLFTGSIKDNIA-YGKDDATTEEIRVA-TELANAAKFIDKLPQGIDTLVGEHGT 521
L Q+ F + + + D TE + A E+A A DKL + +
Sbjct: 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSV--------N 125
Query: 522 QLSGGQKQRIAIARAILK-DPRI------LLLDEATSALDAESEKVVQE-ALDRIMV--- 570
QLSGG+ QR+ +A +L+ P I LLLDE ++LD V Q+ ALDR++
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSELC 180
Query: 571 --NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
V+ +H L+ T+R+AD + ++ +GK++ G
Sbjct: 181 QQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGR 216
|
Length = 248 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 4e-15
Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 9/118 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++S + D +V + ++L + G+ V ++G SGSGKST++ L +PD+G I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 1103 TLDGVEI-QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQA 1154
T+DG ++ K + LR+++G+V Q+ LF + T+ N+ K EA +A
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA 117
|
Length = 240 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 4e-15
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 76/210 (36%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--------ERF 435
IEL ++ + P + S I G + G SG+GKS++ + R
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 436 YDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVA 495
P+ ++L + Q P L G++++ + Y DD
Sbjct: 59 GMPEGEDLL-------------------FLPQRPYLPLGTLREQLIYPWDDV-------- 91
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
LSGG++QR+A AR +L P+ + LDEATSALD
Sbjct: 92 ---------------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124
Query: 556 ESEK----VVQEALDRIMVNRTTVI-VAHR 580
ESE +++E TVI V HR
Sbjct: 125 ESEDRLYQLLKELG-------ITVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 5e-15
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 12/118 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ VS + V D+NL + G+ VA++G SG GKST++ L+ P +G +
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYG---KGGDATEAEIQAAS 1156
LDG + +G V QE L T+ N+A G +G EA +A
Sbjct: 61 LLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKE 113
|
Length = 248 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 11/125 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE H+VS YP V D++L IR G+ + L G SG+GK+T++ LL P G +
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIAY-----GKGGDATEAEIQ 1153
+ G ++ +L QL LR+++G+V Q+ +L + T+ N+A GK + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1154 AASEM 1158
AA
Sbjct: 120 AALRQ 124
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 70/227 (30%), Positives = 108/227 (47%), Gaps = 33/227 (14%)
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGI 448
A+P + G S+++ G ALVG SGSGKS + AG VL+DG
Sbjct: 13 QAAQP---LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69
Query: 449 NLKEFQLQWIRKKIGLVSQEP--------VLFTGSIKDNIAYGK--DDATTEEIRVATEL 498
+ L+ +KI + Q P + T + + +A GK DDAT A L
Sbjct: 70 PVAPCALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGL 127
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
NAA+ + P ++SGG QR+ IA A+L + ++ DE T+ LD ++
Sbjct: 128 ENAARVLKLYP-----------FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176
Query: 559 KVVQEALDRIMVNRT--TVIVAHRLSTV-RNADMIAVIHRGKIVEKG 602
+ + L+ I+ R ++V H + V R AD +AV+ G+IVE+G
Sbjct: 177 ARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223
|
Length = 254 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 6e-15
Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 50/248 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ R + Y + G ++ +G AL+G +G+GKST++ +I P +G +
Sbjct: 12 LCARSISKQYSGVE---VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 444 LIDGINL------KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVAT 496
I G K QL I LV QEP+LF S+K+NI +G
Sbjct: 69 EIGGNPCARLTPAKAHQL-----GIYLVPQEPLLFPNLSVKENILFG------------- 110
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLS---------GGQKQRIAIARAILKDPRILLLD 547
L + K+ Q L+ G QL +Q + I R +++D RIL+LD
Sbjct: 111 -LPKRQASMQKMKQ----LLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165
Query: 548 EATSALD-AESEKV---VQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
E T++L AE+E++ ++E L + V ++H+L +R AD I+V+ G I G
Sbjct: 166 EPTASLTPAETERLFSRIRELLAQ---GVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222
Query: 603 THSKLVED 610
+ L D
Sbjct: 223 KTADLSTD 230
|
Length = 510 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 6e-15
Identities = 66/236 (27%), Positives = 115/236 (48%), Gaps = 26/236 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+ R+V Y + + G S + G L+G +G+GK+T + ++ P AG +
Sbjct: 8 IDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIA-----YGKDDATTEEIRVA 495
+ G + + + R+++G+V Q L FT +++N+ +G A V
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDFT--VRENLLVFGRYFGLSAAAARA-LVP 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
L A KL D VGE LSGG K+R+ +ARA++ DP +L+LDE T+ LD
Sbjct: 121 PLLEFA-----KLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 556 ESEKVVQEALDRIMVN-RTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
++ ++ E L ++ +T ++ H + R D + VI G+ + +G L+E
Sbjct: 172 QARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227
|
Length = 306 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 7e-15
Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IEL +VS + V +D++L + G+ ++G SG+GKST++ + P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
+ +DG ++ L +L+ R+++G++ Q L + T+ N+A
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL 105
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 7e-15
Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 26/223 (11%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-I 458
I G S+ + G ++G++G GK+T++ + ++G + +DG ++ +
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-- 515
R I V Q +F ++++N+ G LA + K+P I L
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTG--------------LAALPRRSRKIPDEIYELFP 119
Query: 516 -----VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-- 568
+G G LSGGQ+Q++AIARA++ P++LLLDE T + K + + R+
Sbjct: 120 VLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
++V L R AD V+ RG++V G +L ED
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELDED 222
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 8e-15
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I +VS YP + RD++ I G+ V L G SG+GKST++ L+ P G I
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
++G ++ +L ++ +LR+Q+G+V Q+ L D T+ N+A
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102
|
Length = 223 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-15
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 41/189 (21%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI-------DGINLKEF 453
+ S+S+++G L G SGSGKST++ + Y P G++L+ D + +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 454 QLQWIRKK-IGLVSQ---------------EPVLFTGSIKDNIAYGKDDATTEEIRVATE 497
++ +R+ IG VSQ EP+L G + +A K + +
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARG-VPREVARAKAADLLTRLNLPER 144
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L + A SGG++QR+ IAR + D ILLLDE T++LDA +
Sbjct: 145 LWSLAP-----------------ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN 187
Query: 558 EKVVQEALD 566
VV E +
Sbjct: 188 RAVVVELIR 196
|
Length = 235 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 9e-15
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 33/222 (14%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQL 455
+I + S+ + SG A++G SGSGK+T++ I + G++L +G K Q
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE-IRVATELANAAKFIDKLPQGIDT 514
Q K + V Q+ +L G T E + L K D + +
Sbjct: 80 Q---KCVAYVRQDDILLPG------------LTVRETLTYTAILRLPRKSSDAIRKKRVE 124
Query: 515 LVGEHG-----------TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
V +SGG+++R++IA +L DP++L+LDE TS LD+ + +
Sbjct: 125 DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVS 184
Query: 564 ALDRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
L ++ NR ++ H R R D I ++ G+IV G
Sbjct: 185 TLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 9e-15
Identities = 54/212 (25%), Positives = 100/212 (47%), Gaps = 27/212 (12%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
G + + G +G +G+GK+T I ++ P +G + G ++ + + +R+ IG
Sbjct: 11 GVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIG 69
Query: 464 LVSQEPVLFTG-SIKDNIA-----YG--KD--DATTEEIRVATELANAAKFIDKLPQGID 513
+V Q + + ++N+ YG KD + EE+ EL AA D
Sbjct: 70 IVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA----------D 119
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
VG SGG ++R+ IA +++ P +L LDE T+ LD + + + + + +
Sbjct: 120 RPVG----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGV 175
Query: 574 TVIV-AHRLSTVRN-ADMIAVIHRGKIVEKGT 603
T+++ H + D IA+I G+I+ +GT
Sbjct: 176 TILLTTHYMEEADKLCDRIAIIDHGRIIAEGT 207
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
IE+ ++ Y D +D+NL I K AL+G SG GKST++ L R
Sbjct: 1 ETMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 1096 DPD-----AGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
D G + LDG I K+ + LR+++G+V Q+P F +I N+AYG
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG 111
|
Length = 253 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-14
Identities = 32/88 (36%), Positives = 58/88 (65%), Gaps = 5/88 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++S YP+ Q +++NL I G+ VA++G SG+GKST++ + R +P +G I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 1103 TLDGVEIQKLQ---LKWLRQQMGLVSQE 1127
L+G +I KL+ L+ LR+++G++ Q
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQH 87
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 67/230 (29%), Positives = 115/230 (50%), Gaps = 28/230 (12%)
Query: 402 FSGF------SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG---INLKE 452
F GF S+ + G ++G +G+GK+T++ +I P G VL G L E
Sbjct: 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE 71
Query: 453 FQLQWIRKKIGLVSQEPVLFTG-SIKDN--IAYGKDDA--TTEEIRVATELAN----AAK 503
Q+ R IG Q+P +F ++ +N +A +D + + R++ E + +
Sbjct: 72 HQI--ARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE 129
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQ 562
I + D L G LS GQKQ + I +++DP++LLLDE + + D E+EK
Sbjct: 130 TIGLADE-ADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA- 183
Query: 563 EALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
E L + + V+V H + VR+ AD + V+H+G ++ +G+ ++ DP
Sbjct: 184 ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-14
Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 42/224 (18%)
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDG--INLKEFQLQWIRKKIGL 464
G A++G SG+GK+T+++ + F P+ +G VL++G I+ KE +R
Sbjct: 50 PGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKE-----MRAISAY 103
Query: 465 VSQEPVLFTGSI--------------KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
V Q+ LF ++ + + +E+ A L A
Sbjct: 104 VQQDD-LFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCA-------- 154
Query: 511 GIDTLVGEHGTQ--LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
+T +G G LSGG+++R+A A +L DP +L DE TS LD+ V + L +
Sbjct: 155 --NTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGL 212
Query: 569 MVNRTTVIVA-HRLST--VRNADMIAVIHRGKIVEKGTHSKLVE 609
T+I H+ S+ D I ++ G++ G+ + V
Sbjct: 213 AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 12/106 (11%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKST---VVSLLQRFYDPD 1098
IEL +VS Y V+ +D+NL+I AG+ VA+VG SGSGKST ++ L + P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 1099 AGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFND-TIRANI 1139
+G + ++G ++ KL K L R+++G V Q L D T+ N+
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENV 104
|
Length = 226 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 62/215 (28%), Positives = 96/215 (44%), Gaps = 38/215 (17%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
S + G L+G++G+GKST++ L+ Y P +G V + G ++ +
Sbjct: 36 WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG------RVSSL- 88
Query: 460 KKIGL-VSQEPVLFTGSIKDNIA-----YGKD----DATTEEIRVATELANAAKFIDKLP 509
+GL P L TG ++NI G D +EI +EL FID LP
Sbjct: 89 --LGLGGGFNPEL-TG--RENIYLNGRLLGLSRKEIDEKIDEIIEFSELG---DFID-LP 139
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SEKVVQEALDRI 568
V S G K R+A A A +P ILL+DE + DA EK + + +
Sbjct: 140 ------VKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+T ++V+H S+++ D V+ +GKI G
Sbjct: 190 KQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 36/107 (33%), Positives = 60/107 (56%), Gaps = 10/107 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----P 1097
IE+ +++ Y + + +++NL I + AL+G SG GKST++ L R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 1098 DAGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + DG +I +K+ + LR+++G+V Q+P F +I NIAYG
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG 105
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 4e-14
Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I +++V ++ + D++L I++G+ VAL+G SG+GKST++ ++ PDAG
Sbjct: 2 SIRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 1102 ITLDGVEIQKLQLKWLRQ-QMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQA 1154
I L+G + + +R ++G V Q LF + T+ NIA+G + +EAEI+A
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRA 116
|
Length = 345 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 5e-14
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 1043 IELHHVSFKYPSRPDV-QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ + ++S Y +++L+I G+T+ +VGESGSGKST+ LL P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 1102 ITLDGVEIQKLQ-LKWLRQQMGLVSQEP 1128
I LDG + + K + + +V Q+P
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDP 91
|
Length = 252 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 5e-14
Identities = 57/214 (26%), Positives = 101/214 (47%), Gaps = 33/214 (15%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKIG 463
S + +G LVG +G+GKST+++ + +G + G L+ + + R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 464 LVSQEPVLFTGSIKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
L Q+ F + + + D TE + ++A A DKL + + Q
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELL---NDVAGALALDDKLGRSTN--------Q 125
Query: 523 LSGGQKQRIAIARAILK-------DPRILLLDEATSALDAESEKVVQE-ALDRIMVN--- 571
LSGG+ QR+ +A +L+ ++LLLDE ++LD V Q+ ALDR++
Sbjct: 126 LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD-----VAQQSALDRLLSALCQ 180
Query: 572 --RTTVIVAHRLS-TVRNADMIAVIHRGKIVEKG 602
V+ +H L+ T+R+A ++ RGK++ G
Sbjct: 181 QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASG 214
|
Length = 248 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 5e-14
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 15/243 (6%)
Query: 365 PEIDAYDTKGKILDDIR---GDIELRDVYFSYPARPNEQIFS--GFSISISSGTTAALVG 419
PE++ D +L IEL+DV+ + A + F+ + I+ G +VG
Sbjct: 316 PELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVG 375
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
++G GKST+ L Y PQ GE+L+DG + R + + LF I
Sbjct: 376 ENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI--- 432
Query: 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
G D+ + A + + DK+ I+ T LS GQ++R+A+ A L+
Sbjct: 433 ---GPDEGEHASLDNAQQYLQRLEIADKV--KIEDGGFSTTTALSTGQQKRLALICAWLE 487
Query: 540 DPRILLLDEATSALDAESEKVVQEAL--DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597
D ILL DE + D ++ E L D +T +I++H AD I + G
Sbjct: 488 DRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGC 547
Query: 598 IVE 600
IV+
Sbjct: 548 IVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 6e-14
Identities = 42/207 (20%), Positives = 82/207 (39%), Gaps = 50/207 (24%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRK 460
S + +G + G G+G++ + + P +GE+ +DG + IR
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 461 KIGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
I V ++ ++ S+ +NIA L
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA--------------------------LSS------ 103
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
LSGG +Q++ +AR + +DPR+L+LDE T +D ++ + + + V+
Sbjct: 104 -----LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVL 158
Query: 577 VAHRLST-----VRNADMIAVIHRGKI 598
+ +S+ + D I V++ G+I
Sbjct: 159 L---ISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 6e-14
Identities = 44/183 (24%), Positives = 82/183 (44%), Gaps = 27/183 (14%)
Query: 404 GFSISISSGT-----TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
F++ + G+ ++G +G GK+T I ++ P G++ I+ + ++ Q+I
Sbjct: 12 EFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQYI 70
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+ + G+++D + TE+A P I+ ++
Sbjct: 71 KAD----------YEGTVRD-LLSSITKDFYTHPYFKTEIAK--------PLQIEQILDR 111
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN--RTTVI 576
+LSGG+ QR+AIA + KD I LLDE ++ LD E + + + R N +T +
Sbjct: 112 EVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFV 171
Query: 577 VAH 579
V H
Sbjct: 172 VEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 1e-13
Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E+EL +V + +V +D+NL I G+ V L+G SG GKST++ ++ +P +G
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-----KGGDATEAEIQAA 1155
I +DG ++ L + ++ + +V Q L+ + T+ NIA+G + ++
Sbjct: 60 ILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEV 117
Query: 1156 SEM 1158
+++
Sbjct: 118 AKL 120
|
Length = 338 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 1e-13
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIRKK 461
S SI G A+VG SGSGKST++ L+ P +G+V+ +G + + + + +K
Sbjct: 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQK 88
Query: 462 IGLVSQEPVL---FTGSIKDNIAY-----GKDDATTEEIRVATELANAAKFIDKLPQGID 513
+G + Q L FT +N+A K A A E+ A G++
Sbjct: 89 LGFIYQFHHLLPDFTAL--ENVAMPLLIGKKKPAEINS--RALEMLAAV--------GLE 136
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT 573
++LSGG++QR+AIARA++ +PR++L DE T LDA + + + L + +
Sbjct: 137 HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQG 196
Query: 574 T--VIVAHRLS 582
T ++V H L
Sbjct: 197 TAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 55/236 (23%), Positives = 92/236 (38%), Gaps = 54/236 (22%)
Query: 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ- 454
R +FS S ++++G + G +G+GK+T++ ++ P AGEV G ++ +
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE 71
Query: 455 -----LQWIRKKIGLVSQ----EPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI 505
L ++ + G+ ++ E + F I A A
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHFWQRFHG-------SGNAATIWEALAQVGLAGLE 124
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D LP G QLS GQ++R+A+AR L + +LDE +ALD E ++
Sbjct: 125 D-LPVG----------QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL---- 169
Query: 566 DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
T ++ AH +G IV TH L A + + L
Sbjct: 170 -------TALMAAH-------------AAQGGIVLLTTHQPLPIAS--AQIRRLDL 203
|
Length = 209 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-13
Identities = 57/220 (25%), Positives = 117/220 (53%), Gaps = 25/220 (11%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S ++ G T A++G++GSGKST+ ++ +P +GE+LID L + ++I ++
Sbjct: 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMI 92
Query: 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK---FIDKLPQGIDTLVGEHGT- 521
Q+P + S+ + +R+ T+L + I+ L Q L+ +H +
Sbjct: 93 FQDP---STSLNPRQRISQ--ILDFPLRLNTDLEPEQREKQIIETLRQV--GLLPDHASY 145
Query: 522 ---QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR------ 572
L+ GQKQR+ +ARA++ P++++ DEA ++LD ++ L +M+
Sbjct: 146 YPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMS----MRSQLINLMLELQEKQGI 201
Query: 573 TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + V L +++ +D + V+H+G++VE+G+ + ++ P
Sbjct: 202 SYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 50/215 (23%), Positives = 95/215 (44%), Gaps = 21/215 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
S I G +G +G+GKST + ++ P +G+V ++G + + +++R IGLV
Sbjct: 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IGLV 102
Query: 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN--AAKFIDKLPQ-----GIDTLVGE 518
+ D + + V + +F ++L ++ +
Sbjct: 103 MGQ---KLQLWWDL-------PALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIV- 577
+LS GQ+ R +A A+L P++L LDE T LD ++ ++E L R ++
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 578 -AHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610
H + D + +I +G++V GT ++L E
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247
|
Length = 325 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 54/229 (23%), Positives = 93/229 (40%), Gaps = 41/229 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
+R +F G S ++++G + G +G GK+T++ ++ P +GEV +G L E +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV--ATELANAAKFIDKLPQGI 512
+ R + L + S +N+ + + + A F D LP
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFED-LPAA- 126
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572
QLS GQ++R+A+AR L + +LDE T+ALD + +
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDK-------AGVALLA--- 167
Query: 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621
++ AH + RG IV TH L ++ +RL
Sbjct: 168 -GLLRAH-------------LARGGIVLLTTHQDLGLVE----ARELRL 198
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-13
Identities = 40/123 (32%), Positives = 70/123 (56%), Gaps = 11/123 (8%)
Query: 1026 IDPSDESGTILEDVK--------GEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVAL 1076
ID E+ ++E+ + G I+ V +Y RP++ V L+ +I + V +
Sbjct: 1213 IDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGI 1270
Query: 1077 VGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136
VG +G+GKS++++ L R + + G I +DG +I K L LR+ +G++ Q PVLF+ T+R
Sbjct: 1271 VGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR 1330
Query: 1137 ANI 1139
N+
Sbjct: 1331 FNL 1333
|
Length = 1622 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 35/84 (41%), Positives = 57/84 (67%), Gaps = 4/84 (4%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI--QKLQLKWLRQQ 1120
++N++I G+ V L+G +GSGKST++ L P +G I +DGV+I +K++L +R++
Sbjct: 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84
Query: 1121 MGLVSQEP--VLFNDTIRANIAYG 1142
+GLV Q P LF +TI +IA+G
Sbjct: 85 VGLVFQYPEYQLFEETIEKDIAFG 108
|
Length = 287 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 2e-13
Identities = 53/202 (26%), Positives = 102/202 (50%), Gaps = 10/202 (4%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464
+I+ A +G +G+GK+T +S++ P +G VL+ G ++ E L +R+ +G+
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGM 1007
Query: 465 VSQEPVLFTG-SIKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522
Q +LF ++ ++I Y + + E +L A D G+ E
Sbjct: 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWE---EAQLEMEAMLEDT---GLHHKRNEEAQD 1061
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
LSGG ++++++A A + D ++++LDE TS +D S + + + L + RT ++ H +
Sbjct: 1062 LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD 1121
Query: 583 TVRN-ADMIAVIHRGKIVEKGT 603
D IA+I +G++ GT
Sbjct: 1122 EADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 2e-13
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 21/222 (9%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ELR+V F+Y N +++I G L+G +GSGKST+ L+ Y PQ+GE+
Sbjct: 323 LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
L+DG + QL+ RK V + LF + G + + + K
Sbjct: 381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQ--------LIEK 426
Query: 504 FIDKLPQGIDTLVGEHG---TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
++ +L T + + +LS GQK+R+A+ A+L++ IL+LDE + D +
Sbjct: 427 WLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRRE 486
Query: 561 V-QEALDRIMVNRTTVI-VAHRLSTVRNADMIAVIHRGKIVE 600
Q L + T+ ++H +AD + + G++ E
Sbjct: 487 FYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-13
Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 38/232 (16%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
L+ + S I G ++G +G+GKST++ LI Y P +G+V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 444 LIDGINLKEFQLQWIRKKIGL-VSQEPVLFTGSIKDNI---------AYGKDDATTEEIR 493
+ G ++ + I L +P L TG ++NI + D +EI
Sbjct: 85 KVTG------KVAPL---IELGAGFDPEL-TG--RENIYLRGLILGLTRKEIDEKVDEI- 131
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
E A FID Q + T S G R+A + A +P ILLLDE +
Sbjct: 132 --IEFAELGDFID---QPVKTY--------SSGMYARLAFSVATHVEPDILLLDEVLAVG 178
Query: 554 DAE-SEKVVQEALDRIMVNRTTVIVAHRLSTVRNA-DMIAVIHRGKIVEKGT 603
DA EK ++ + + N+T V+V+H L ++ D + G+I +G+
Sbjct: 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 40/107 (37%), Positives = 57/107 (53%), Gaps = 12/107 (11%)
Query: 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKST---VVSLLQRFYDPD 1098
IEL ++S Y + VQ + ++L I G+ VA+VG SGSGKST ++ L R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 1099 AGHITLDGVEIQKLQLKWL----RQQMGLVSQEPVLFND-TIRANIA 1140
+G + +DG +I KL K L R+ +G V Q L D T N+
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVE 104
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 3e-13
Identities = 59/194 (30%), Positives = 94/194 (48%), Gaps = 28/194 (14%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL----KEFQLQ 456
I +G + + G T AL+G+SGSGKST+++++ D +GEV + G L +E + +
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 457 WIRKKIGLVSQEPVLF-TGSIKDNIAY-----GKDDATTEEIRVAT-ELANAAKFIDKLP 509
K +G V Q +L T + +N+ G+ + A E K +D LP
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLP 144
Query: 510 QGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569
QLSGG++QR+A+ARA P +L DE T LD ++ + + L
Sbjct: 145 -----------AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL--FS 191
Query: 570 VNR----TTVIVAH 579
+NR T ++V H
Sbjct: 192 LNREHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 4e-13
Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 5/113 (4%)
Query: 1029 SDESGTILEDVKGEIELHHVSFKYPS--RPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
S S + L + GEI++H + +Y + +P V + + I+ G+ V + G +GSGKS+
Sbjct: 6 SGSSNSGLVGLGGEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSS 62
Query: 1087 VVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+ R D G I +DG++I KL L LR ++ ++ Q+P+LF+ +IR N+
Sbjct: 63 LSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL 115
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116
Q D+NL++ G VAL+G SGSGKST++ ++ PD+G I L+G + ++ +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR- 70
Query: 1117 LRQQMGLVSQEPVLFND-TIRANIAYG 1142
+++G V Q LF T+R NIA+G
Sbjct: 71 -DRKIGFVFQHYALFKHLTVRDNIAFG 96
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-13
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 22/207 (10%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWIR- 459
S+ + +G +L G++G+GKST++ ++ Y P GE++ +G +E Q IR
Sbjct: 23 NVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EELQASNIRD 78
Query: 460 ---KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-- 513
I ++ QE L S+ +NI G + + A K + +L I+
Sbjct: 79 TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPA 138
Query: 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR- 572
T VG G GQ+Q + IA+A+ K R+L+LDE T++L ESE V + R +
Sbjct: 139 TPVGNLG----LGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDLKAHG 193
Query: 573 -TTVIVAHRLSTVRN-ADMIAVIHRGK 597
+ ++H+L+ V+ +D I VI G+
Sbjct: 194 IACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 59/220 (26%), Positives = 97/220 (44%), Gaps = 25/220 (11%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLKEFQLQWI 458
I G ++++ G A++G +GSGKST+ I Y+ +G +L G +L E +
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDER 74
Query: 459 -RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-- 515
R + L Q P G +A R L F+ L + L
Sbjct: 75 ARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSA-RGEEPLD-LLDFLKLLKAKLALLGM 132
Query: 516 ----------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
G SGG+K+R I + L +P++ +LDE S LD ++ K+V E +
Sbjct: 133 DEEFLNRSVNEG-----FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGI 187
Query: 566 DRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
+R+ +R+ +I+ H RL D + V+ G+IV+ G
Sbjct: 188 NRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-13
Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLK 1115
V+ D++ +R G+T+ LVGESGSGKST+ +L P +G I DG ++ +L+
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 1116 WLRQQMGLVSQEP 1128
LR+++ +V Q+P
Sbjct: 364 RLRRRIQMVFQDP 376
|
Length = 539 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 8e-13
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 4/136 (2%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
L + +G + + +V+ P R ++ ++AG+ +A++G SGSGKST+ L+ +
Sbjct: 310 LPEPEGHLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAE-IQA 1154
P +G + LDG ++++ + + +G + Q+ LF T+ NIA + G+ + E I
Sbjct: 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIA--RFGENADPEKIIE 426
Query: 1155 ASEMANAHKFICSLQQ 1170
A+++A H+ I L
Sbjct: 427 AAKLAGVHELILRLPD 442
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 8e-13
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 1043 IELHHVSFKYPSRPDVQVF--RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I + SF + S F +D+NL++ G+ VA+VG GSGKS+++S L + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK 1143
+++ G + VSQEP + N TIR NI +GK
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGK 90
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 8e-13
Identities = 33/103 (32%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V+ YP +N+ I AG+ V LVG SG+GKST++ L+ + P +G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIAY 1141
++G ++ L + +LR+++G+V Q+ +L + + N+A+
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF 101
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 8e-13
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 10/121 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +SF+Y +R D++ +R G+ VAL+G +G+GKST+ SLL R Y G I
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAAS 1156
++ G ++++ L ++G+V Q+P L D ++R N+ Y G A I
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELL 117
Query: 1157 E 1157
Sbjct: 118 A 118
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 8e-13
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 36/226 (15%)
Query: 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458
+ S G +G +G+GKST + +I + P +G V + G ++ + + +
Sbjct: 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-V 73
Query: 459 RKKIG-----------LVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFID 506
++ IG + +E + F I YG K + + EL
Sbjct: 74 QRNIGYLPEHNPLYLDMYVREYLQFIAGI-----YGMKGQLLKQRVEEMIELVG------ 122
Query: 507 KLPQGIDTLVGEHG---TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
L E QLS G +QR+ +A+A++ DP++L+LDE T+ LD ++
Sbjct: 123 --------LRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRN 174
Query: 564 ALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608
+ I ++T ++ H + V D + +I++GKIV +L
Sbjct: 175 VIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 14/99 (14%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
L ++S K+ + + DLNL I GK A++GESGSGKST+++++ D+G + L
Sbjct: 1 LKNISKKFGDK---VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 1105 DGVEIQKL-----------QLKWLRQQMGLVSQEPVLFN 1132
+G E L +L +L Q L+ E V N
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEEN 96
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 39/144 (27%), Positives = 76/144 (52%), Gaps = 2/144 (1%)
Query: 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
P+ L +G + + ++ P + + + ++ ++AG+ + ++G SGSGKST
Sbjct: 319 LPAAAERMPLPAPQGALSVERLTAAPPGQKKP-ILKGISFALQAGEALGIIGPSGSGKST 377
Query: 1087 VVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD 1146
+ LL + P +G + LDG ++++ + L + +G + Q+ LF+ TI NIA G +
Sbjct: 378 LARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIAR-FGEE 436
Query: 1147 ATEAEIQAASEMANAHKFICSLQQ 1170
A ++ A+ +A H+ I L Q
Sbjct: 437 ADPEKVIEAARLAGVHELILRLPQ 460
|
Length = 580 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL +VS Y ++L I+ G+ L+G SG GK+T++ L+ F P +G I
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEIQAAS 1156
LDG +I L ++ + V Q LF T+ NIA+G + + A
Sbjct: 58 LLDGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 1157 EMAN----AHKFICSL---QQVR 1172
++ A++ L QQ R
Sbjct: 116 DLVQLEGYANRKPSQLSGGQQQR 138
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 2e-12
Identities = 81/279 (29%), Positives = 121/279 (43%), Gaps = 69/279 (24%)
Query: 392 SYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
P P ++I S+S G ++G +G+GKST++ ++ AG +D K
Sbjct: 13 VVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---VD----K 56
Query: 452 EFQLQ-WIRK--KIGLVSQEPVL------------FTGSIKD--------NIAYGKDDAT 488
EF + K+G + QEP L IKD + + + DA
Sbjct: 57 EFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDAD 116
Query: 489 TEEIRVATELANAAKFID---------KLPQGIDTLVGEHG----TQLSGGQKQRIAIAR 535
+ + E A + ID KL +D L T+LSGG+++R+A+ R
Sbjct: 117 MDAL--LAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCR 174
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH-R--LSTVRNADMIAV 592
+L P +LLLDE T+ LDAES +++ L T V V H R L V A I
Sbjct: 175 LLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNV--AGWILE 230
Query: 593 IHRGK-IVEKGTHSKLVEDPEGAYSQLIRL-QEANKESE 629
+ RG+ I +G +S +E E RL QE +ES
Sbjct: 231 LDRGRGIPWEGNYSSWLEQKEK------RLEQEEKEESA 263
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 38/241 (15%)
Query: 406 SISISSGTTAALVGQSGSGKS----TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461
S S+ G +VG+SGSGKS ++ LI+ A ++ +G +L+ + R
Sbjct: 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNL 86
Query: 462 IG----LVSQEPVLFTGSIKDNIAYGKDDATTEEIRV---ATELANAAKFIDKLPQGIDT 514
+G ++ Q+P+ S+ N Y E I+V + + ID L
Sbjct: 87 VGAEVAMIFQDPMT---SL--NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLL-----N 136
Query: 515 LVG-----------EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
VG H QLSGG QR+ IA AI P++L+ DE T+ALD + + E
Sbjct: 137 QVGIPDPASRLDVYPH--QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIE 194
Query: 564 ALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ-LI 619
L + N V++ H L+ V A I V++ G++VE G + P Y+Q L+
Sbjct: 195 LLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYTQALL 254
Query: 620 R 620
R
Sbjct: 255 R 255
|
Length = 326 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 36/118 (30%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 1032 SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091
+++ +I++ +++F Y +++NL I + A +G SG GKST++
Sbjct: 3 MMSMVATAPSKIQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59
Query: 1092 QRFYD--PD---AGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
R Y+ P+ G I LDG I K + LR ++G+V Q+P F +I NIA+G
Sbjct: 60 NRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG 117
|
Length = 260 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 10/110 (9%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--P 1097
G+I + + Y D Q + +NL I + AL+G SG GKST + L R D P
Sbjct: 1 MGKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIP 57
Query: 1098 DA---GHITLDGVEIQKLQLKW--LRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + LDG +I K + LR+++G+V Q+P F +I N+AYG
Sbjct: 58 SVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG 107
|
Length = 250 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (173), Expect = 3e-12
Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 32/218 (14%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QW 457
S ++ +G + G G+G++ + + +GE+L+DG K ++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG---KPVRIRSPRDA 331
Query: 458 IRKKIGLVS----QEPVLFTGSIKDNIAYGKDDATTEE--IRVATELANAAKFIDKL--- 508
I+ I V E ++ SI +NI + I E A A ++I +L
Sbjct: 332 IKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIK 391
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD--AESEKVVQEALD 566
+ +G LSGG +Q++ +AR + DP++L+LDE T +D A++E + +
Sbjct: 392 TPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE--IYRLIR 445
Query: 567 RIMVNRTTVIVAHRLST-----VRNADMIAVIHRGKIV 599
+ +++ +S+ + +D I V+ G+IV
Sbjct: 446 ELAAEGKAILM---ISSELPELLGLSDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ ++SF Y ++ DL+L + AG+ +AL G++G+GK+T+ +L +G I
Sbjct: 1 RIENISFSYKKGTEI--LDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG-KGGDATEAEIQAA----- 1155
L+G I+ K R+ +G V Q+ LF D++R + G K DA + +
Sbjct: 59 LNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLD 115
Query: 1156 -SEMANAHKFICS 1167
+ H S
Sbjct: 116 LYALKERHPLSLS 128
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 11/119 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IE+ +VS ++ + D++L I +G+ VAL+G SGSGK+T++ L+ PD+G
Sbjct: 2 SIEVRNVSKRFGDFVAL---DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEIQA 1154
I G + + ++ + +G V Q LF T+ N+A+G + EAEI+A
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA 115
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 12/115 (10%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-- 1119
D++L +R G+ ++G SGSGKST++ + R +P +G + +DG +I + K LR+
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100
Query: 1120 --QMGLVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQV 1171
++ +V Q L + T+ N+A+G E+Q + +L+ V
Sbjct: 101 RKKISMVFQSFALLPHRTVLENVAFG-------LEVQGVPRAEREERAAEALELV 148
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 5e-12
Identities = 34/102 (33%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ + F+Y + + L+L I G AL+G +G+GKST++ L Y P G +
Sbjct: 5 IEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ G E+ KW+R ++GLV Q+P +F+ T+ ++A+G
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG 104
|
Length = 274 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 55/214 (25%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLKEFQLQWIR 459
G S +I G +G +G+GK+T + ++ P +GEV + G+ K+F
Sbjct: 39 GISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKF-----L 93
Query: 460 KKIGLVSQE--------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511
++IG+V + PV+ + + I + + +EL + + +D +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVR- 152
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
QLS GQ+ R IA A+L +P IL LDE T LD +++ ++ L
Sbjct: 153 ----------QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRE 202
Query: 572 R-TTVIV-AHRLSTV-RNADMIAVIHRGKIVEKG 602
R TTV++ +H + + A + VI +G+++ G
Sbjct: 203 RGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 5e-12
Identities = 69/255 (27%), Positives = 117/255 (45%), Gaps = 40/255 (15%)
Query: 408 SISSGTTAALVGQSGSGKS-TVISLIERFYDPQ--AGEVLIDG---INLKEFQLQWIR-K 460
S+ +G T +VG+SGSGKS T +L+ G +G +NL E +L +R +
Sbjct: 38 SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAE 97
Query: 461 KIGLVSQEPVLFTG---SIKDNIA--------YGKDDATTEEIRV--ATELANAAKFIDK 507
+I ++ Q+P+ + + + K +A E +R+ A ++ A K +
Sbjct: 98 QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKM 157
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
P + SGG +QR+ IA A+L P++L+ DE T+ALD + + L+
Sbjct: 158 YPH-----------EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNE 206
Query: 568 IM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ-----LI 619
+ N +++ H L V D + V++ G+ +E G + P YS +
Sbjct: 207 LKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSIGLLNAVP 266
Query: 620 RLQEANKESEQTIDG 634
RL +A ES TI G
Sbjct: 267 RL-DAEGESLLTIPG 280
|
Length = 330 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 6e-12
Identities = 59/269 (21%), Positives = 110/269 (40%), Gaps = 57/269 (21%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVL------------------- 444
S +I G ++G+SG+GKS ++ ++ Y+P +G ++
Sbjct: 20 SFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79
Query: 445 --------------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490
+D NL + + IRK+I ++ Q YG D
Sbjct: 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFAL---------YGDDTVLDN 130
Query: 491 EIRVATELA-NAAKFIDKLPQGIDTLVGEH-----GTQLSGGQKQRIAIARAILKDPRIL 544
+ E+ + + + I+ + H LSGG+KQR+ +AR + K+P +
Sbjct: 131 VLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLF 190
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601
L DE T LD ++ K+V AL+ + + V+ +H + + +D + G+I E+
Sbjct: 191 LADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIKEE 250
Query: 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
GT ++V + + + E E E
Sbjct: 251 GTPDEVVA----VFMEGVSEVEKECEVEV 275
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 6e-12
Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 31/179 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
R +FSG S ++++G L G +GSGK+T++ LI P AG + +DG +
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD----- 65
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAY-GKDDATTEEIRVATELANAAKFIDKLPQGID 513
+P + Y G +A + VA L A F+ I
Sbjct: 66 -----------IDDPDVAE-----ACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIA 109
Query: 514 ---TLVGEHGTQ------LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
VG LS GQK+R+A+AR ++ + I +LDE T+ALDA + + E
Sbjct: 110 AALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-12
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 16/123 (13%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST----VVSLLQRFYDPDAGHIT 1103
V F V RD++ ++ G+ + +VGESGSGKST ++ LL +G +
Sbjct: 13 VEFATDGGR-VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 1104 LDGVEIQKLQLKWLRQQMG----LVSQEPV-LFN------DTIRANIAYGKGGDATEAEI 1152
LDG ++ L + +R+ G ++ Q+P+ N D IR + G EA
Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARK 131
Query: 1153 QAA 1155
+A
Sbjct: 132 RAV 134
|
Length = 539 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 8e-12
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 1043 IELHHVSFKYPSR------PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+E+ ++ +P V+ ++ I+ G+T+ LVGESG GKST+ L+ +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 1097 PDAGHITLDGVEIQKL----QLKWLRQQMGLVS 1125
P +G I +G +I KL + + + + + V
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVG 97
|
Length = 268 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.1 bits (161), Expect = 8e-12
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 25/203 (12%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464
S++++SG L+G +G+GK+T ++ AG ++ID ++ L R+ IG
Sbjct: 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82
Query: 465 VSQEPVLFTG-SIKDNIAYG---KDDATTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH 519
+ QE +F S+ DN+ +DD + E+ A EL +F I+ L
Sbjct: 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELM--EEF------HIEHLRDSM 134
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES----EKVVQEALDR---IMVN- 571
G LSGG+++R+ IARA+ +P+ +LLDE + +D S +++++ D +++
Sbjct: 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITD 194
Query: 572 ---RTTVIVAHRLSTVRNADMIA 591
R T+ V R V +IA
Sbjct: 195 HNVRETLAVCERAYIVSQGHLIA 217
|
Length = 241 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 9e-12
Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 25/148 (16%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106
H+S Y +P D++L I +G+ V ++G SG GK+T+++L+ F P G I L+G
Sbjct: 8 HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 1107 VEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAYG---KG-GDATEAEIQAASEMAN- 1160
I+ + G+V Q L + N+A+G +G A EI A +M
Sbjct: 67 RRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI--AHQMLAL 119
Query: 1161 ------AHKFICSL-----QQVRTSRLL 1177
HK+I L Q+V +R L
Sbjct: 120 VGLEGAEHKYIWQLSGGMRQRVGIARAL 147
|
Length = 259 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 9e-12
Identities = 55/172 (31%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFS-----ISISSGTTAALVGQSGSGKSTVISLIERFYDP 438
+ELR+V F+Y GFS ++I G L+G +GSGKST+ L+ Y P
Sbjct: 323 LELRNVTFAYQDN-------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATEL 498
Q+GE+L+DG + Q + RK V + LF + G + V L
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLL------GPEGKPANPALVEKWL 429
Query: 499 ANAAKFIDKLPQGIDTLVGEH--GTQLSGGQKQRIAIARAILKDPRILLLDE 548
K KL L +LS GQK+R+A+ A+ ++ ILLLDE
Sbjct: 430 ER-LKMAHKL-----ELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 1e-11
Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ- 1110
YP P+V + LN G+ +AL+G +G+GKST++ L P +G + +DG +
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1111 -KLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ L RQ++GLV Q+P LF + ++A+G
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFG 93
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 1e-11
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I L ++S Y RP + +++L + G+ + LVG +G+GKST++ +L +PD+G +
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQAASE 1157
T ++G +SQEP L T+ + G AE++ A
Sbjct: 61 TRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA 106
|
Length = 530 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 1e-11
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 7/79 (8%)
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH-R 580
QLSGG+K R+A+A+ +L++P +LLLDE T+ LD ES + ++EAL T ++V+H R
Sbjct: 70 QLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDR 127
Query: 581 --LSTVRNADMIAVIHRGK 597
L V A I + GK
Sbjct: 128 YFLDQV--ATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (165), Expect = 3e-11
Identities = 61/208 (29%), Positives = 95/208 (45%), Gaps = 39/208 (18%)
Query: 974 DGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAK-------SAAASIFAIIDRESKI 1026
GK DV F ++ + I + +FS DS K S +++ +++ R
Sbjct: 1163 KGKIEIMDV--NFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR---- 1216
Query: 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDL------NLKIRAGKTVALVGES 1080
D+K + HH+ FK D+ +D N+ ++ +L E
Sbjct: 1217 ---------FYDLKND---HHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264
Query: 1081 GSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140
GSG+ + V ++G I LDGV+I LK LR +VSQEP+LFN +I NI
Sbjct: 1265 GSGEDSTVF-------KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIK 1317
Query: 1141 YGKGGDATEAEIQAASEMANAHKFICSL 1168
+GK DAT +++ A + A +FI SL
Sbjct: 1318 FGK-EDATREDVKRACKFAAIDEFIESL 1344
|
Length = 1466 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 3e-11
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL ++ ++ V+ ++L +R G+ AL+GE+G+GKST++ +L Y PD+G I
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 1103 TLDGVEIQ 1110
+DG E+
Sbjct: 58 LVDGKEVS 65
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-11
Identities = 59/226 (26%), Positives = 104/226 (46%), Gaps = 30/226 (13%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456
P + S +G AL+G++G+GKST++ ++ Y P AG +LIDG +E +
Sbjct: 15 PGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRFA 71
Query: 457 WIRKK----IGLVSQE----PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL 508
+ ++ QE P + ++ +N+ G+ + A + ++ L
Sbjct: 72 STTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHL 128
Query: 509 PQGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA-ESE---KVVQ 562
ID T + LS GQ+Q + IA+A+ ++ R++ DE TS+L A E E +V++
Sbjct: 129 GVDIDPDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIR 184
Query: 563 EALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKL 607
E R + V+HR+ + D I V G+ V T +
Sbjct: 185 ELRAE---GRVILYVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 18/206 (8%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
S + G L+G +G+GK+T +I +P GE+ +G L Q I+ +IG
Sbjct: 20 NISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QEIKNRIG 75
Query: 464 LVSQEPVLFTG-SIKDNIAY--GKDDATTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH 519
+ +E L+ +++D + Y EI+ + + K + I L
Sbjct: 76 YLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKEL---- 131
Query: 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA- 578
S G +Q+I A++ +P +L+LDE S LD + +++++A+ + T+I +
Sbjct: 132 ----SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS 187
Query: 579 HRLSTV-RNADMIAVIHRGKIVEKGT 603
HR+ V D + ++ +G+ V GT
Sbjct: 188 HRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 4e-11
Identities = 35/104 (33%), Positives = 63/104 (60%), Gaps = 7/104 (6%)
Query: 1043 IELHHVSFKYP--SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I + H+SF+YP + ++ D++ + G+ VA+VG +GSGKST+ LL P+AG
Sbjct: 6 IRVEHISFRYPDAATYALK---DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
IT+ G+ + + + +R+Q+G+V Q P T++ ++A+G
Sbjct: 63 TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG 106
|
Length = 279 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-11
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +S + V+ ++L +R G+ AL+GE+G+GKST++ +L Y PD+G I
Sbjct: 9 LELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 1103 TLDGVEIQKLQLKWLRQQMG--LVSQEPVLFND-TIRANIAYG 1142
+DG + + G V QE L + ++ NI G
Sbjct: 66 LIDGKPVAFSSPR-DALAAGIATVHQELSLVPNLSVAENIFLG 107
|
Length = 500 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-11
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI-- 1109
D + +++NL I AL+G SG GKST + L R D GHI LDGV+I
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ + LR+++G+V Q+P F +I N+AYG
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYG 107
|
Length = 250 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 34/121 (28%), Positives = 67/121 (55%), Gaps = 9/121 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++ Y S+ VQ RD++ + G+ L+GE+G+GK+T++ ++ PD+G +
Sbjct: 2 LEVTDLTKSYGSK--VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAAS 1156
T+DGV+ + ++R+++G++ E L+ T R N+ Y G +A I S
Sbjct: 60 TIDGVDTVR-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELS 118
Query: 1157 E 1157
+
Sbjct: 119 K 119
|
Length = 245 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 27/83 (32%), Positives = 51/83 (61%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116
D ++ +++L +RAG+ +A+ G SG GKST++ ++ P +G + +G ++ L+ +
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 1117 LRQQMGLVSQEPVLFNDTIRANI 1139
RQQ+ +Q P LF DT+ N+
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNL 97
|
Length = 223 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 55/227 (24%), Positives = 93/227 (40%), Gaps = 45/227 (19%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466
+S G L+G +G+GK+T++ I P G V + G + + + IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 467 QE-------PVLFTGSIKDNIA--------YGKDDATTEEIRVATELANAAKFIDKLPQG 511
Q P+ ++ D +R A + D+ P G
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGLTELADR-PVG 112
Query: 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571
+LSGGQ+QR+ +ARA+ P +LLLDE + LD +++++ E +
Sbjct: 113 ----------ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGA 162
Query: 572 RTTVI-VAHRLSTVRNADMIAVIHR-----GKIVEKGTHSKLVEDPE 612
T ++ H L A +A R G+++ GT +L +DP
Sbjct: 163 GTAILMTTHDL-----AQAMATCDRVVLLNGRVIADGTPQQL-QDPA 203
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 42/128 (32%), Positives = 67/128 (52%), Gaps = 11/128 (8%)
Query: 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I L +VS+ Y + + D+NL I G A +G +GSGKST++ LL + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 1101 HITLDGVEI----QKLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEAE 1151
+ +D I + +K +R+++GLV Q E LF +T+ ++A+G G EAE
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 1152 IQAASEMA 1159
A ++A
Sbjct: 123 ALAREKLA 130
|
Length = 280 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 7e-11
Identities = 61/224 (27%), Positives = 112/224 (50%), Gaps = 25/224 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQL 455
+I G ++SI+ G A++G +GSGKST+ +I Y G++L G ++ + +
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 456 QWIRKKIG--LVSQEPVLFTG-SIKD--NIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
+ R +G L Q P+ G S D +AY + + + EL + +F++ + +
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPGVSNADFLRLAYN----SKRKFQGLPEL-DPLEFLEIINE 132
Query: 511 GIDTLVGEHGTQL--------SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
+ LVG + L SGG+K+R I + L D + +LDE S LD ++ K++
Sbjct: 133 KLK-LVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIA 191
Query: 563 EALDRIM-VNRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGT 603
E ++++M + +++ H RL D + V+ GKI++ G
Sbjct: 192 EGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 7e-11
Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 29/239 (12%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLI----ERFYDPQAGEVLIDGINLKEFQLQWIRKK 461
S++++ G LVG+SGSGKS + I + + A + D I+L + RK
Sbjct: 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKL 86
Query: 462 IG----LVSQEP---VLFTGSIKDNIAYGKDDATTE---------EIRVATELANAAKFI 505
+G ++ QEP + + + + T + R A EL +
Sbjct: 87 VGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIK 146
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
D + +L+ G+ Q++ IA A+ PR+L+ DE T+A++ ++ + L
Sbjct: 147 DH-----KDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLL 201
Query: 566 DRIMVNRTTVI--VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ-LIR 620
R+ N T I ++H L + AD I V++ G+ VE +LV P Y+Q LIR
Sbjct: 202 TRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 8e-11
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-----AGH 1101
VSF + V+ ++ +++ G+ + +VGESGSGKS + + G
Sbjct: 8 SVSFPTDAGV-VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGE 66
Query: 1102 ITLDGVEIQKLQLKWLRQ----QMGLVSQEPVL-FNDTIR 1136
I DG ++ L K LR+ ++ ++ Q+P+ N +
Sbjct: 67 ILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMT 106
|
Length = 316 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-11
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-- 1119
D +L + G+ ++G SGSGKST+V LL R +P G I +DG +I KL LR+
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104
Query: 1120 --QMGLVSQEPVLF-NDTIRANIAYG 1142
++ +V Q L + T+ N+A+G
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFG 130
|
Length = 386 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 9e-11
Identities = 38/100 (38%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 1057 DVQVF-------RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITL 1104
DV VF D++L I A +G SG GKST + L R D G ITL
Sbjct: 24 DVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL 83
Query: 1105 DGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
DG +I +L + LR ++G+V Q+P F +I N+AYG
Sbjct: 84 DGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYG 123
|
Length = 267 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (153), Expect = 1e-10
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 10/108 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA 1099
+I+ V+F Y D + ++++I VA +G SG GKST + L R D P
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 1100 ---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G I +DG I + +Q+ LR+ +G+V Q P F +I N+AYG
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYG 107
|
Length = 250 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA--- 1099
+E HVSF YP D++ I G AL+G +GSGKST+ L+ PD
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
IT+DG+ + + +R+++G+V Q P
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNP 93
|
Length = 282 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-10
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V R ++ +I + V +VG +GSGKST++ R + G I ++G EI L+ LR+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
Q ++ Q+PVLF+ T+R N+ +A+ AE+ AA E+
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNV--DPFLEASSAEVWAALEL 1421
|
Length = 1560 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L +V + + +++ +RAG+ + G SG GKST++ ++ P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
+G +I L+ + RQQ+ +Q P LF DT+ N+ +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF 103
|
Length = 225 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 65/240 (27%), Positives = 99/240 (41%), Gaps = 42/240 (17%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVI-SLIERFYDPQA-------GEVLID 446
AR + I S+ I G AL+G++G+GKST++ +L A G+V ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 447 GINLKEFQ-LQWIRKKIGLVSQEPVLFTGSIKDNIAYG------KDDATTEEIR----VA 495
G L + R + L F S ++ + G + A T A
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA 129
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK---------DPRILLL 546
LA A LVG T LSGG+ R+ AR + + PR LLL
Sbjct: 130 LALAGA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLL 178
Query: 547 DEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
DE T+ALD + + + + R+ N + + H + R+AD IA++ G IV G
Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238
|
Length = 272 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 2e-10
Identities = 46/175 (26%), Positives = 86/175 (49%), Gaps = 16/175 (9%)
Query: 974 DGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033
+ +A F+ + S T+ ++ S +A A S+ ++ + ID E+
Sbjct: 1163 ENQAGFASTMGLLLSYTLNI-----TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEAT 1217
Query: 1034 TILED--------VKGEIELHHVSFKYPSRPDVQ-VFRDLNLKIRAGKTVALVGESGSGK 1084
I+E+ +G I+ V +Y RP + V L+ + + V +VG +G+GK
Sbjct: 1218 AIIENNRPVSGWPSRGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGK 1275
Query: 1085 STVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
S++++ L R + + G I +D ++ K L LR+ + ++ Q PVLF+ T+R NI
Sbjct: 1276 SSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI 1330
|
Length = 1495 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-10
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 6/85 (7%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IE+ +++ Y +RP V D++L + G+ AL+G +G+GKST++ + P +G
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQ 1126
I + G ++K + K LR +G V Q
Sbjct: 61 IKIFGKPVRK-RRKRLR--IGYVPQ 82
|
Length = 254 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 38/119 (31%), Positives = 66/119 (55%), Gaps = 10/119 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +VS + QV +++L I G+ V ++G SGSGKST++ + + + +G +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1103 TLDGVEIQ--KLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG----KGGDATEAEIQA 1154
+DG+++ K+ + +RQ+ G+V Q+ LF T N+ +G +G EAE QA
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQA 117
|
Length = 240 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 21/154 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL +VS + + + DL+ ++ G+ A+VG +G+GK+T++SLL + P +G +
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1103 TLDGVEIQKLQLKW-LRQQMGLVS---QEPVLFNDTIRANIAYGK-------GGDATEAE 1151
TL G K + + LR+++GLVS E +T+R + G D T +
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 1152 IQAASEMAN-------AHKFICSLQQVRTSRLLL 1178
+ AA + A + SL Q R+L+
Sbjct: 149 LAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLI 182
|
Length = 257 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 47/212 (22%), Positives = 86/212 (40%), Gaps = 34/212 (16%)
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTA-----ALVGQSGSGKSTVISLIERFYDPQAG 441
RD YP F + + G ++G +G GK+T + L+ P G
Sbjct: 339 RDTLVEYPDLKKTY--GDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEG 396
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANA 501
++ K Q+I + G+++D + + TE+
Sbjct: 397 SEEDLKVSYKP---QYISPD----------YDGTVEDLL-RSAIRSAFGSSYFKTEIVK- 441
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
P ++ L+ +LSGG+ QR+AIA A+ ++ + LLDE ++ LD E +V
Sbjct: 442 -------PLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 562 QEALDRIMVNR--TTVIVAHRLSTVRNADMIA 591
+ + R + N T ++V H + D ++
Sbjct: 495 AKVIRRFIENNEKTALVVDHDIYM---IDYVS 523
|
Length = 591 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 2e-10
Identities = 58/202 (28%), Positives = 89/202 (44%), Gaps = 62/202 (30%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456
P +QI S+S G ++G +G+GKST++ ++ AG +D KEF+ +
Sbjct: 18 PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---VD----KEFEGE 63
Query: 457 -WIRK--KIGLVSQEPVL---FT---------GSIKD--------NIAYGKDDATTEEIR 493
K+G + QEP L T +K AY + DA + +
Sbjct: 64 ARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDAL- 122
Query: 494 VATELANAAKFID------------------KLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
A E + ID + P D V T+LSGG+++R+A+ R
Sbjct: 123 -AAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPW-DAKV----TKLSGGERRRVALCR 176
Query: 536 AILKDPRILLLDEATSALDAES 557
+L+ P +LLLDE T+ LDAES
Sbjct: 177 LLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-10
Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 17/237 (7%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLI--ERFYDPQAGEVLIDGINLKEFQLQ- 456
I G ++ + G A++G +GSGKST+ + + Y+ G V G +L E +
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPED 74
Query: 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA--NAAKFID------KL 508
+ I + Q PV G + + R L + ++ K+
Sbjct: 75 RAGEGIFMAFQYPVEIPG-VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM 133
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568
P+ D L SGG+K+R I + + +P + +LDE+ S LD ++ K+V + ++ +
Sbjct: 134 PE--DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL 191
Query: 569 M-VNRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
R+ +IV H R+ D + V+++G+IV+ G + + + E Y L Q
Sbjct: 192 RDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ 248
|
Length = 248 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 2e-10
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 15/219 (6%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVI----SLIERFYDPQAGEVLIDGINLKEFQL 455
Q ++I G AL+G SGSGKST++ LI + L+ +E +L
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77
Query: 456 QW-IRK---KIGLVSQEPVLFTG-SIKDNIAYGKDDATT---EEIRVATELANAAKFIDK 507
IRK G + Q+ L S+ +N+ G +T T
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
G+ + + LSGGQ+QR+AIARA+++ +++L DE ++LD ES ++V + L
Sbjct: 138 TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD 197
Query: 568 IMVNR--TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
I N T V+ H++ +R + I + +G + G+
Sbjct: 198 INQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGS 236
|
Length = 262 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 12/113 (10%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
E +E+ +++ Y D Q D++++I + A +G SG GKST++ R D
Sbjct: 22 EQTA--LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76
Query: 1097 P-DA----GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
D G I LDG I +K+ + LR+++G+V Q P F +I N+ YG
Sbjct: 77 LVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYG 129
|
Length = 272 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-10
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 1085 STVVSLLQRFYDPDAGHITLDGVEIQKL-QLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
ST++ L+ P +G I LDG + L K LR+++G+V Q+P LF + T+R N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1143 KGGDATEAEIQAASEMANAHKFI 1165
+A + A E F+
Sbjct: 61 LRDKEADARAEEALERVGLPDFL 83
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-10
Identities = 41/128 (32%), Positives = 67/128 (52%), Gaps = 12/128 (9%)
Query: 1042 EIELHHVSFKY-PSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+I V +Y P + + D+N+ I +G VA++G +GSGKST++ L P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 1100 GHITLDGVEIQ----KLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEA 1150
G +T+ I +LK LR+++G+V Q E LF +T+ +I +G G +A
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 1151 EIQAASEM 1158
+ Q A EM
Sbjct: 122 K-QKAREM 128
|
Length = 290 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-10
Identities = 68/242 (28%), Positives = 107/242 (44%), Gaps = 51/242 (21%)
Query: 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSG 424
PE D + + + I L + SY RP I S ++ G +VG +G+G
Sbjct: 243 PEPDEPSARHALPANE-PRIVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAG 298
Query: 425 KSTVISLIERFYDPQA--------------GEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470
KST++SLI + PQ GE + D I+K IG VS
Sbjct: 299 KSTLLSLITGDH-PQGYSNDLTLFGRRRGSGETIWD-----------IKKHIGYVSSSLH 346
Query: 471 L---FTGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521
L + S+++ I G D A ++ + A +++D L GID +
Sbjct: 347 LDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKL-----AQQWLDIL--GIDKRTADAPF 399
Query: 522 Q-LSGGQKQRIA-IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT--VIV 577
LS GQ QR+A I RA++K P +L+LDE LD + ++V+ +D ++ T + V
Sbjct: 400 HSLSWGQ-QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFV 458
Query: 578 AH 579
+H
Sbjct: 459 SH 460
|
Length = 490 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 4e-10
Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 1043 IELHHVSFKYP-SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IEL ++S +P + +++L I AG+ ++G SG+GKST++ + P +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFN----DTIRANIA 1140
+ +DG ++ L +L+ R+Q+G++ Q FN T+ N+A
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQH---FNLLSSRTVFDNVA 104
|
Length = 343 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 3/107 (2%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G++ + ++ KY + V +++ I G+ V L+G +GSGKST++S R + + G
Sbjct: 1 GQMTVKDLTAKYTEGGNA-VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI-AYGKGGD 1146
I +DGV + L+ R+ G++ Q+ +F+ T R N+ YGK D
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSD 105
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 4e-10
Identities = 33/110 (30%), Positives = 62/110 (56%), Gaps = 11/110 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++ ++P V D++L ++ G+ AL+GE+G+GKST++ +L Y PD+G I
Sbjct: 5 LEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI 61
Query: 1103 TLDGVEIQKLQLK----WLRQQMGLVSQEPVLF-NDTIRANIAYGKGGDA 1147
+DG +++++K +R +G+V Q +L T+ NI G
Sbjct: 62 RVDG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSK 108
|
Length = 501 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 4e-10
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 28/177 (15%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK----EF--Q 454
+FSG S ++++G + G +G+GK++++ ++ P AGEVL G ++ E+
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75
Query: 455 LQWIRKKIG----LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
L ++ + G L + E + F + E + A A F D +P
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHG-------PGDDEALWEALAQVGLAGFED-VPV 127
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
QLS GQ++R+A+AR L + +LDE +A+D + ++ L +
Sbjct: 128 R----------QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 5e-10
Identities = 27/82 (32%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
++++L++ G ++G +GSGKS ++ + F PD+G I L+G +I L ++ +
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT--NLPPEKRDI 73
Query: 1122 GLVSQEPVLF-NDTIRANIAYG 1142
V Q LF + T+ NIAYG
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYG 95
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 5e-10
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E + + YP + + +N K G+ VAL+G +G+GKST+ P +G +
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 1103 TLDGVEIQ--KLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ G I+ K L +R+ +G+V Q P LF T+ ++A+G
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFG 103
|
Length = 275 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 45/253 (17%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLI----ERFYDPQAGEVLIDGINLKEFQL 455
+ S++++ G LVG+SGSGKS + I + + A + D I+L
Sbjct: 21 KAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP 80
Query: 456 QWIRKKIG----LVSQEPV--------------------LFTGSIKDNIAYGKDDATTEE 491
+ RK +G ++ QEP + G + K
Sbjct: 81 RERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRK------- 133
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
R A EL + D ++ + +L+ G+ Q++ IA A+ PR+L+ DE T+
Sbjct: 134 -RRAIELLHRVGIKDH-----KDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTN 187
Query: 552 ALDAESEKVVQEALDRIMVNRTTVI--VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608
+++ ++ + L R+ N T I ++H L + AD I V++ G+ VE +LV
Sbjct: 188 SMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELV 247
Query: 609 EDPEGAYSQ-LIR 620
P Y+Q LIR
Sbjct: 248 TMPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 5e-10
Identities = 62/224 (27%), Positives = 102/224 (45%), Gaps = 28/224 (12%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWIR- 459
G + + G L G++G+GKST++ ++ Y P GE+ G + IR
Sbjct: 19 GIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSG---SPLKASNIRD 74
Query: 460 ---KKIGLVSQEPVLFTG-SIKDNIAYGKD-------DATTEEIRVATELANAAKFIDKL 508
I ++ QE L S+ +NI G + A A L + +D
Sbjct: 75 TERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQ-LDAD 133
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEALDR 567
+ VG++G GGQ+Q + IA+A+ K R+L+LDE +S+L + E+E ++ D
Sbjct: 134 N--VTRPVGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL 187
Query: 568 IMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610
V ++H+L+ V+ D I VI G+ V S + ED
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 50/203 (24%), Positives = 99/203 (48%), Gaps = 25/203 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L +V S+ R ++ S S+ + G L+G +G+GKST++ ++ P G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503
+G + ++ ++ +K+ L + P+ ++ K+D I A + A
Sbjct: 62 KRNG----KLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKED-----ILPALKRVQAGH 112
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
ID Q +LSGG+ QR+ +ARA+L P++L+LDE T +D + + +
Sbjct: 113 LIDAPMQ-----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161
Query: 564 ALDRIM--VNRTTVIVAHRLSTV 584
+D++ ++ ++V+H L V
Sbjct: 162 LIDQLRRELDCAVLMVSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-10
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 25/217 (11%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS--QEPVLFT 473
+L+G +G+GK+TV + + FY P G +L+ G +++ I + G+V Q LF
Sbjct: 35 SLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARM-GVVRTFQHVRLFR 93
Query: 474 G-------------SIKDNIAYG--KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+K + G K A A L AA +++++ G+
Sbjct: 94 EMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANR 149
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD--RIMVNRTTVI 576
L+ GQ++R+ IAR ++ P IL+LDE + L+ + K + E + R N T ++
Sbjct: 150 QAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLL 209
Query: 577 VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ H + V +D I V+++G + GT ++ +P+
Sbjct: 210 IEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNPD 246
|
Length = 255 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 24/249 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK-IGL 464
S ++ G+ AALVG +GSGKST+ + F +G++ I G + Q ++K +
Sbjct: 27 SFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTR----QALQKNLVAY 82
Query: 465 VSQE-------PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVG 517
V Q PVL ++D + G+ +R A + + +D +
Sbjct: 83 VPQSEEVDWSFPVL----VEDVVMMGRY-GHMGWLRRAK--KRDRQIVTAALARVDMVEF 135
Query: 518 EHGT--QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN-RTT 574
H +LSGGQK+R+ +ARAI + +++LLDE + +D ++E + L + +T
Sbjct: 136 RHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTM 195
Query: 575 VIVAHRLSTVRNADMIAVIHRGKIVEKG-THSKLV-EDPEGAYSQLIRLQEANKESEQTI 632
++ H L +V V+ +G ++ G T + E+ E A+S ++R N E I
Sbjct: 196 LVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAENLELAFSGVLRHVALNGSEESII 255
Query: 633 DGQRKSEIS 641
+ IS
Sbjct: 256 TDDERPFIS 264
|
Length = 272 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 7e-10
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA 1099
++E +SF Y D Q D++L+ + AL+G SG GKST + L R D P A
Sbjct: 6 KMEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGA 62
Query: 1100 ---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G I LDG I + + LR+++G+V Q+P F +I N+AYG
Sbjct: 63 RVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYG 110
|
Length = 253 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 7e-10
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +++ Y V DL+L + G+ L+G +G+GK+T + +L P +G
Sbjct: 1 LQIRNLTKTYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131
++G I+ K RQ +G Q LF
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALF 87
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 7e-10
Identities = 57/218 (26%), Positives = 112/218 (51%), Gaps = 20/218 (9%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGINLKEFQLQW 457
Q S+ I+ G L+G +G+GK+T++ + DP+A G ++ DG ++ ++Q
Sbjct: 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTL--CGDPRATSGRIVFDGKDITDWQTAK 76
Query: 458 I-RKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515
I R+ + +V + +F+ ++++N+A G A ++ + + + P+ +
Sbjct: 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIK-----WVYELFPRLHERR 131
Query: 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR--- 572
+ GT +SGG++Q +AI RA++ PR+LLLDE + L + ++Q+ D I R
Sbjct: 132 IQRAGT-MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQG 187
Query: 573 -TTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLV 608
T +V + ++ AD V+ G +V + T L+
Sbjct: 188 MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225
|
Length = 237 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 8e-10
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
E+ ++ Y P V D++ +++ G+ +A+VG +G+GKST++ + P +G I
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 1104 LDGVEIQKLQLKWLRQQMGLVSQ 1126
+ G ++K R+++G V Q
Sbjct: 58 VFGKPLEK-----ERKRIGYVPQ 75
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 8e-10
Identities = 25/86 (29%), Positives = 52/86 (60%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +++FKY + D++ ++ G+ ++++G +GSGKST V L+ + ++G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP 1128
+DG + + + +R ++G+V Q P
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNP 90
|
Length = 279 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---Q 1113
D +V + ++L I G+ VA+VG SGSGKST++ LL +P +G + +G + KL +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 1114 LKWLR-QQMGLVSQ 1126
LR +++G + Q
Sbjct: 77 RAKLRNKKLGFIYQ 90
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 9e-10
Identities = 46/226 (20%), Positives = 93/226 (41%), Gaps = 28/226 (12%)
Query: 393 YPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452
R + S + +G + G +G+G+S ++ I P +G +L++G ++
Sbjct: 266 KDRRGVTAV-KDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLG 324
Query: 453 FQ--LQWIRKKIGLVSQEP-----VLFTGSIKDNIA----YGKDDATTEEIRVATELANA 501
+ R + V ++ VL S+ +N+ K + + A
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVL-DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA 383
Query: 502 AKFIDKL---PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ I++ D LSGG +Q++ +AR + + P +L+ + T LD +
Sbjct: 384 RELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAI 439
Query: 559 KVVQEALDRIMVNRTTVIVAHRLST-----VRNADMIAVIHRGKIV 599
+ + E L + V++ +S + +D IAVI+ G+IV
Sbjct: 440 EFIHERLLELRDAGKAVLL---ISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 9/99 (9%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK 1111
D + +++ I AL+G SG GKST + L R D G + LDG +I +
Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 1112 --LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG--KGGD 1146
+ L LR+++G+V Q P F +IR NI+YG K GD
Sbjct: 117 DGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGD 155
|
Length = 305 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 43/150 (28%), Positives = 73/150 (48%), Gaps = 20/150 (13%)
Query: 1043 IELHHVSFKY-PSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I+ +V + Y P P + + +++ ++ G VALVG +GSGKST++ P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 1101 HITLDGVEIQ----KLQLKWLRQQMGLVSQ--EPVLFNDTIRANIAYGK---GGDATEAE 1151
IT+ G I LK LR+++ LV Q E LF +T+ ++ +G G EA+
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 1152 IQA---------ASEMANAHKFICSLQQVR 1172
+A + ++ + F S Q+R
Sbjct: 123 EKALKWLKKVGLSEDLISKSPFELSGGQMR 152
|
Length = 287 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +V+ ++ + DLNL I G+ V L+G SG GK+T + ++ +P +G I
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
+ G ++ L K + + +V Q L+ + T+ NIA+G
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFG 96
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 34/101 (33%), Positives = 57/101 (56%), Gaps = 6/101 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+EL +S + + +V +L+L I G+ + L+G SG GK+TV+ L+ F PD+G I
Sbjct: 15 VELRGISKSFDGK---EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
LDG +I + + + + V Q LF + T+ N+A+G
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFG 110
|
Length = 375 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-09
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118
+D++L ++ G+ V L+G SG GK+T++ ++ AG I G +I +L + +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--K 75
Query: 1119 QQMGLVSQEPVLF-NDTIRANIAYG---KGGDATEAEIQAASEM 1158
+ G+V Q LF N T+ NIAYG +G E + +E+
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-ERVAEL 118
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
IE+HH+S ++ + + + L ++ G+TVA+VG SGSGKST++++L DP +G
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 1102 ITLDGVEIQKL 1112
+ L G + KL
Sbjct: 67 VRLLGQPLHKL 77
|
Length = 228 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 19/83 (22%)
Query: 1043 IELHHVSFKYPS-------------------RPDVQVFRDLNLKIRAGKTVALVGESGSG 1083
IEL +VS YP+ + +D++ ++ G+ + L+G +G+G
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 1084 KSTVVSLLQRFYDPDAGHITLDG 1106
KST++ LL Y PD+G +T+ G
Sbjct: 61 KSTLLRLLAGIYPPDSGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 2e-09
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 43/216 (19%)
Query: 403 SGFSI----SISSGTTAALVGQSGSGKSTVIS-----LIERFYDPQAGEVLIDGINLKEF 453
+GF + G ++G +G GK+T + LI D + E D + LK F
Sbjct: 86 NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE-EEPSWDEV-LKRF 143
Query: 454 ---QLQ-WIRK----------KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
+LQ + +K K V P +F G +++ + +E E+
Sbjct: 144 RGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLK------KVDERGKLDEV- 196
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+++L G++ ++ ++LSGG+ QR+AIA A+L+D DE TS LD
Sbjct: 197 -----VERL--GLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRL 249
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIA-VIH 594
V + + + ++V H L+ + D +A +H
Sbjct: 250 NVARLIRELAEGKYVLVVEHDLAVL---DYLADNVH 282
|
Length = 590 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWL-R 1118
D +L I G+ ++G SGSGKST V +L R +P AG I +DG I K +L+ + R
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 1119 QQMGLVSQEPVLF-NDTIRANIAYG 1142
+++G+V Q+ LF + TI N + G
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLG 95
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117
+ D++L++R G+ V L+G +G+GK+T+ +L+ FY P +G + G +I L
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-R 75
Query: 1118 RQQMGLV 1124
++G+
Sbjct: 76 IARLGIA 82
|
Length = 250 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 3e-09
Identities = 37/113 (32%), Positives = 56/113 (49%), Gaps = 18/113 (15%)
Query: 1027 DPSDESGTILEDVKGEIELHHVSFKYPS-----RPDVQVFR---DLNLKIRAGKTVALVG 1078
P E +L +V+ + +P R V R ++L +R G+T+ LVG
Sbjct: 267 PPLPEDAPVLLEVED------LRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVG 320
Query: 1079 ESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWLRQQMGLVSQEP 1128
ESGSGKST+ L R G I DG +I L +++ LR++M +V Q+P
Sbjct: 321 ESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
|
Length = 534 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 1046 HHVSFKYPS------RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+S Y V +++L +++G+TVAL+G SG GKST+ LL P
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 1100 GHITLDGVEIQKL---QLKWLRQQMGLVSQEPV-LFN--DTIRANIA 1140
G+++ G + KL Q K R+ + +V Q+ + N T+R I
Sbjct: 67 GNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIR 113
|
Length = 268 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 4e-09
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQLK 1115
Q D+N++I K AL+G SG GKST + R D A G + ++G +++ +
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 1116 WLRQQMGLVSQEPVLFNDTIRANIAYG 1142
LR+ +G+V Q+P +F +I NI+Y
Sbjct: 76 ALRKNVGMVFQQPNVFVKSIYENISYA 102
|
Length = 246 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 27/100 (27%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L +++ +Y + + ++L + G L+G +G+GK+T++ +L P +G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
+DG ++ K Q + LR+++G + QE ++ N T+R + Y
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDY 95
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ VSF +R + +F +++L + GK A++G SG GK+T++ L+ PD G I
Sbjct: 8 VDMRGVSF---TRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY 1141
DG I + +L +R++M ++ Q LF D + N+AY
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY 107
|
Length = 269 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 4e-09
Identities = 43/198 (21%), Positives = 65/198 (32%), Gaps = 60/198 (30%)
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGINLKEFQLQWIRKKIGLVSQEP 469
G +VG GSGK+T+ + R P G V+ IDG ++ E L + I
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII------- 53
Query: 470 VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529
VG SG +
Sbjct: 54 ----------------------------------------------VGGKKASGSGELRL 67
Query: 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV------NRTTVIVAHRLST 583
R+A+A A P +L+LDE TS LDAE E ++ + ++ TVI+
Sbjct: 68 RLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127
Query: 584 VRNADMIAVIHRGKIVEK 601
++ +IV
Sbjct: 128 DLGPALLRRRFDRRIVLL 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 4e-09
Identities = 46/171 (26%), Positives = 86/171 (50%), Gaps = 26/171 (15%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFYDPQ-AGEVLIDGINLKEFQLQWI 458
I +G + S G A++G SGSGKST+++ + R G +L + + I
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQI 138
Query: 459 RKKIGLVSQEPVLFTG-SIKDNIAY----------GKDDATTEEIRVATELANAAKFIDK 507
K+ G V+Q+ +L+ ++++ + + K + V +EL
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------- 190
Query: 508 LPQGIDTLVGEHGTQ-LSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
L + +T++G + +SGG+++R++IA +L +P +L+LDE TS LDA +
Sbjct: 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241
|
Length = 659 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + +VS Y ++ V D++L I G +++G +G+GKST++S++ R D+G I
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQE 1127
T+DG+E+ K L +++ ++ QE
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQE 83
|
Length = 252 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+ +++ Y R +V D++L++ +G+ V L+G +G+GK+T ++ PD+
Sbjct: 2 MSTLVAENLAKSYKKR---KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDS 58
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGL--VSQEPVLFND-TIRANI 1139
G I LD +I KL + R ++G+ + QE +F T+ NI
Sbjct: 59 GKILLDDEDITKLPM-HKRARLGIGYLPQEASIFRKLTVEDNI 100
|
Length = 243 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 7e-09
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 7/103 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ +S +Y V+V + ++ + AG+ AL+G +G+GKST++ ++ PD+G +
Sbjct: 12 LCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 1103 TLDGVEIQKLQLKWLRQQMG--LVSQEPVLF-NDTIRANIAYG 1142
+ G +L Q+G LV QEP+LF N +++ NI +G
Sbjct: 69 EIGGNPCARLT-PAKAHQLGIYLVPQEPLLFPNLSVKENILFG 110
|
Length = 510 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-09
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 36/213 (16%)
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTAA-----LVGQSGSGKSTVISLIERFYDPQAG 441
R+ YP + FS+ + G +VG +G GK+T L+ P G
Sbjct: 337 RETLVEYPDL--TKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG 394
Query: 442 EVLIDGINLK-EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELAN 500
EV + LK ++ Q+I+ + G+++D + DD + + +E+
Sbjct: 395 EVDPE---LKISYKPQYIKPD----------YDGTVEDLLRSITDDLGSSYYK--SEIIK 439
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
P ++ L+ ++ LSGG+ QR+AIA + +D + LLDE ++ LD E
Sbjct: 440 --------PLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLA 491
Query: 561 VQEALDRIMVNR--TTVIVAHRLSTVRNADMIA 591
V +A+ RI R T ++V H + + D I+
Sbjct: 492 VAKAIRRIAEEREATALVVDHDIYMI---DYIS 521
|
Length = 590 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-09
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 10/90 (11%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKS-TVVSLLQRFYDPDAGH----I 1102
V+F V+ + ++ I AG+T+ALVGESGSGKS T +S+L P A H I
Sbjct: 14 VAFHQEGG-TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI 72
Query: 1103 TLDGVEIQKL---QLKWLR-QQMGLVSQEP 1128
DG ++ QL+ +R ++G++ QEP
Sbjct: 73 LFDGEDLLAASERQLRGVRGNKIGMIFQEP 102
|
Length = 534 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 8e-09
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 32/206 (15%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERF--------YDPQAGEVLIDGINLKEFQLQWI 458
+ I G A+VGQSG+GK+T++ +I Y P +G+V + + + +
Sbjct: 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV-----EVPKNTVSAL 458
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
EP +I +++ + T ++ A E+ N A D L
Sbjct: 459 IPG----EYEPEFGEVTILEHLR-----SKTGDLNAAVEILNRAGLSDA------VLYRR 503
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRT-TVIV 577
++LS GQK+R +A+ + + P +LL+DE + LD + V + + T+IV
Sbjct: 504 KFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIV 563
Query: 578 AHRLSTVRNA---DMIAVIHRGKIVE 600
V NA D + ++ GK+
Sbjct: 564 VTHRPEVGNALRPDTLILVGYGKVPV 589
|
Length = 593 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 9e-09
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 10/111 (9%)
Query: 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-- 1096
+K ++E +++ Y + Q D+NL I K AL+G SG GKST + L R D
Sbjct: 1 MKIKMESKNLNLWYGEK---QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 1097 PDA---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ G + LDG I + + + LR+++G+V Q+P F +I N+AYG
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYG 108
|
Length = 251 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 9e-09
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 13/114 (11%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI--------Q 1110
V ++L+++ G+ VA++G SGSGK+T++ + P+AG I + + I Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 1111 KLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQAASEMA 1159
K ++ LRQ +G V Q LF + T+ NI G KG EA +A +A
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLA 130
|
Length = 250 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 70/248 (28%), Positives = 118/248 (47%), Gaps = 31/248 (12%)
Query: 397 PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-----K 451
P + SG ++++ G ALVG++G+GKST++ ++ Y AG +L G + K
Sbjct: 15 PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK 74
Query: 452 EFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATT-EEIRVATELANAAKFIDKL- 508
Q IG++ QE L +I +NI G++ I A A K + +L
Sbjct: 75 SSQEA----GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLN 130
Query: 509 -PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESE---KVVQE 563
D LVGE LS G++Q + IA+ + + +++++DE T AL D E+E +V++E
Sbjct: 131 LRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186
Query: 564 ALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ R V ++HRL + D + V G+ + + + L ED LI +
Sbjct: 187 LKSQ---GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED------SLIEMM 237
Query: 623 EANKESEQ 630
K +Q
Sbjct: 238 VGRKLEDQ 245
|
Length = 501 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 1e-08
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 7/91 (7%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI--QK 1111
Q+ D+NL I + A +G SG GKST + R D P+ G + +DG+++
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR ++G+V Q+P F +I N+AYG
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYG 109
|
Length = 251 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L V F Y P +L + AG+ VA++G SG+GKST+++L+ F P +G I
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
++GV+ + + ++ QE LF T+ NI G
Sbjct: 57 LINGVDH--TASPPAERPVSMLFQENNLFAHLTVAQNIGLG 95
|
Length = 231 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 1e-08
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G++++ ++ KY V +DL+ + G+ V L+G +GSGKST++S L R + G
Sbjct: 1216 GQMDVQGLTAKYTEAGR-AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-G 1273
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
I +DGV + L+ R+ G++ Q+ +F+ T R N+
Sbjct: 1274 EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL 1312
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQL 1114
Q D+N + GK A+VG++GSGKST++ + P G +T+D + I + +
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 1115 KWLRQQMGLVSQ--EPVLFNDTIRANIAYG 1142
+ +R+++G+V Q E LF DT+ I +G
Sbjct: 81 RPVRKRIGMVFQFPESQLFEDTVEREIIFG 110
|
Length = 286 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 23/125 (18%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ H+ Y +P D+NL + +G+ + ++G SG GK+T+++L+ F G I
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-------TIRANIAYG--KGGDATEAEIQ 1153
TLDG ++ G ++ V+F + ++ N+A+G G ++
Sbjct: 59 TLDGKPVE-----------GPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLE 107
Query: 1154 AASEM 1158
A +M
Sbjct: 108 IAHQM 112
|
Length = 255 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 56/209 (26%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTV---------ISLIERFYDPQAGEVLIDGINL 450
Q+ + S + GT AL+G+SG+GK+T+ +I GE+LI+G L
Sbjct: 21 QLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT-------GEILINGRPL 73
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ 510
+ ++ G V Q+ V +R A +
Sbjct: 74 DKN----FQRSTGYVEQQDVHSPNL---------------TVREALRFSAL--------- 105
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI-M 569
L G LS Q++R+ I + P IL LDE TS LD+++ + L ++
Sbjct: 106 ----LRG-----LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD 156
Query: 570 VNRTTVIVAHRLSTV--RNADMIAVIHRG 596
+ + H+ S D + ++ RG
Sbjct: 157 SGQAILCTIHQPSASIFEKFDRLLLLKRG 185
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-08
Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 41/209 (19%)
Query: 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGINLKEF---QLQ 456
I +++ G+ L+G++G+GKST+I L+ P +GE+ L GI L F QL+
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLE 386
Query: 457 WIRKKIG----LVSQEPVLFTGSIKDNI-AYG-KDDATTEEIRVATELANAAKFIDKLPQ 510
++R L P ++D + +G + D TEE R
Sbjct: 387 FLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETR----------------- 429
Query: 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570
+ SGG+K R+ +A + + P +LLLDE T+ LD + + + EAL I
Sbjct: 430 -----------RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDF 476
Query: 571 NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598
V+V+H +R+ D + ++H GK+
Sbjct: 477 EGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
Length = 638 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 34/90 (37%), Positives = 51/90 (56%), Gaps = 6/90 (6%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEI-QKL 1112
Q + +NL I A + AL+G SG GKST++ L R D G +T+DG +I +
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76
Query: 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR ++G+V Q+P F +I N+AYG
Sbjct: 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYG 106
|
Length = 249 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-08
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
D K +EL +V F Y + +NL I+ G+ V L+G +GSGKST+ LL Y P
Sbjct: 319 DWKT-LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASE 1157
+G I LDG + QL+ R+ V + LF+ + G G A+ I+ +
Sbjct: 376 QSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQ 429
Query: 1158 -MANAHK 1163
+ AHK
Sbjct: 430 RLELAHK 436
|
Length = 546 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 53/221 (23%), Positives = 88/221 (39%), Gaps = 31/221 (14%)
Query: 372 TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431
+G + G I+ ++ P + + S + SG + G +G GKS++ +
Sbjct: 441 GRGIVEYQDNG-IKFENIPLVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRI 497
Query: 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY--------- 482
+ + G + + K+ V Q P + G+++D I Y
Sbjct: 498 LGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKR 546
Query: 483 -GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
G D E+I +L + I + G V + LSGG+KQRIA+AR P
Sbjct: 547 RGLSDKDLEQILDNVQLTH----ILEREGGWSA-VQDWMDVLSGGEKQRIAMARLFYHKP 601
Query: 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582
+ +LDE TSA+ + E + T V+HR S
Sbjct: 602 QFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHRKS 640
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 51/197 (25%), Positives = 88/197 (44%), Gaps = 38/197 (19%)
Query: 391 FSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450
F Y +P + S + +G L G +G+GK+T++ LI +P+ GE+L + ++
Sbjct: 9 FDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 451 K------EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE-EIRVATELANAAK 503
K + QL ++ + G+ P L ++++N Y + I L +
Sbjct: 66 KKDLCTYQKQLCFVGHRSGI---NPYL---TLRENCLYDIHFSPGAVGITELCRLFSLEH 119
Query: 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563
ID P G+ LS GQK+++A+ R + ++ LLDE ALD +
Sbjct: 120 LID-YPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALD-------EL 161
Query: 564 ALDRIMVNRTTVIVAHR 580
+L I+ T I HR
Sbjct: 162 SLLTII----TKIQEHR 174
|
Length = 200 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 1063 DLNLKIR---AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQLK 1115
D LKI + + G SG+GKST++ + PD G I L+G + +K+ L
Sbjct: 12 DFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLP 71
Query: 1116 WLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
++++GLV Q+ LF + +R N+A+G
Sbjct: 72 PQQRKIGLVFQQYALFPHLNVRENLAFG 99
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I +VSF+Y S +D++ I G+ ++VG +GSGKST+ L+ +G I
Sbjct: 8 IVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ I + LR+ +G+V Q P ++ ++A+G
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG 108
|
Length = 269 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-08
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ +++ Y ++ + DL+L + GK AL+G +G GKST++ R P +G
Sbjct: 2 TLRTENLTVGYGTKR---ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGT 58
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGK 1143
+ L I L + L +++ L+ Q + T+R +AYG+
Sbjct: 59 VFLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGR 101
|
Length = 255 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 3e-08
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E ++S + R + D++L +R G+ VA++G +G+GKST++ L PD+G +
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 1103 TLDGVEIQKLQLKWLRQQM 1121
L+G + W ++
Sbjct: 60 RLNGRPLA----DWSPAEL 74
|
Length = 258 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 53/233 (22%), Positives = 108/233 (46%), Gaps = 27/233 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGE 442
+E R++ P+ + S S+ G + G G+G++ ++ + Y + G
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQE-------PVLFTGSIKDNIAYGKDDATTEEIR 493
V I+G ++++ Q IR I +V ++ P+L G NI + ++R
Sbjct: 318 VFINGKPVDIRNPA-QAIRAGIAMVPEDRKRHGIVPILGVGK---NITLSVLKSFCFKMR 373
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHG------TQLSGGQKQRIAIARAILKDPRILLLD 547
+ +AA + + I L + +LSGG +Q+ +A+ +L +PR+L+LD
Sbjct: 374 I-----DAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD 428
Query: 548 EATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTVRN-ADMIAVIHRGKI 598
E T +D ++ + + ++++ +IV + L+ V +D + VI GK+
Sbjct: 429 EPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 4e-08
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124
+L + G+ VA++G SG+GKST+++L+ F +P +G I ++ L ++ + ++
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSML 75
Query: 1125 SQEPVLFND-TIRANIAYG 1142
QE LF T+R NI G
Sbjct: 76 FQENNLFAHLTVRQNIGLG 94
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 55.1 bits (134), Expect = 4e-08
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
+ D++ +R G+ L+G +G+GK+T+ +L+ F P +G + DG +I L
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP 68
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-08
Identities = 27/104 (25%), Positives = 58/104 (55%), Gaps = 6/104 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +++ Y + +N+ I+ G+ A++G +G+GKST+ L P +G I
Sbjct: 6 LKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1103 TLDG--VEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
DG ++ + L LR+ +G+V Q+P LF+ ++ ++++G
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFG 107
|
Length = 283 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 4e-08
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IEL ++S Y + + +D++L I G + LVG +G+GKST++ L+ +PD G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 1103 TLD 1105
T
Sbjct: 58 TWG 60
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-08
Identities = 47/217 (21%), Positives = 93/217 (42%), Gaps = 45/217 (20%)
Query: 402 FSGFSISI-SSGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLIDGINLKE 452
F + + G ++G +G GKST + ++ R+ DP + + +I E
Sbjct: 89 FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTE 148
Query: 453 FQLQWIRK----------KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
Q + +K K V P + G + E ++ E
Sbjct: 149 LQ-NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVG------------ELLKKVDERGKFD 195
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE---- 558
+ +++L G++ ++ ++LSGG+ QR+AIA A+L+D + DE +S LD
Sbjct: 196 EVVERL--GLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAA 253
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA-VIH 594
+V++E + + ++V H L+ + D ++ +H
Sbjct: 254 RVIRELAED---GKYVIVVEHDLAVL---DYLSDFVH 284
|
Length = 591 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 5e-08
Identities = 29/103 (28%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + + + V + +NL + G+ AL+GE+G+GKST++ +L ++P G I
Sbjct: 6 ISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI 62
Query: 1103 TLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFND-TIRANIAYGK 1143
T++ + KL K Q +G++ QE + ++ T+ N+ G+
Sbjct: 63 TINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGR 105
|
Length = 510 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (132), Expect = 6e-08
Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 2/102 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ ++ FKY DV ++ I G+ V+++G++GSGKST L+ ++ G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+DG + + LR+++G+V Q P T+ ++A+G
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG 106
|
Length = 277 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 6e-08
Identities = 29/101 (28%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L + F Y +P +L G+ A+VG SGSGKST+++L+ F P +G +
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
++GV++ + + ++ QE LF T+ N+ G
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLG 94
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 6e-08
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +L ++I G A++G +G GKST++ L R P GH+ LDG IQ K + +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1120 QMGLVSQEPVLFND-TIRANIAYGK 1143
++GL++Q D T++ +A G+
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGR 106
|
Length = 265 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 7e-08
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI----QKLQLKWLR 1118
D + + A+ G SGSGK+T++ L+ PD G I L+G + + + L +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 1119 QQMGLVSQEPVLFND-TIRANIAYG 1142
+++G V QE LF ++R N+ YG
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYG 99
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 7e-08
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLN---LKIRAGKTVALVGESGSGKSTVVSLLQRF 1094
D +I L +VS+ Y + + F+ LN L + K ++G +GSGKST++ L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFE-FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL 60
Query: 1095 YDPDAGHITLDGVEI----QKL-QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGK---G 1144
+ G + I +K+ ++K LR+++GLV Q P LF +TI +IA+G G
Sbjct: 61 IISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLG 120
Query: 1145 GDATEA 1150
+ EA
Sbjct: 121 ENKQEA 126
|
Length = 289 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 8e-08
Identities = 53/220 (24%), Positives = 105/220 (47%), Gaps = 28/220 (12%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459
++++ G AL+G++G+GKST++ ++ ++P G + I+ IN + +
Sbjct: 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78
Query: 460 K-KIGLVSQE-PVLFTGSIKDNIAYGK---------DDATTEEIRVATELANAAKFIDK- 507
+ IG++ QE V+ ++ +N+ G+ + E+RV AA + +
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV 133
Query: 508 -LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL-DAESEKVVQEAL 565
L +D V LS KQ + IA+ ++ D +++++DE TS+L + E + + +
Sbjct: 134 GLKVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLF--LI 187
Query: 566 DRIMVNRTTVIV--AHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ T IV +H+L+ +R D V+ G V G
Sbjct: 188 MNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 9e-08
Identities = 53/194 (27%), Positives = 76/194 (39%), Gaps = 49/194 (25%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I D F YP P +F + I + A+VG +G GKST++ LI P +G V
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 444 L--------------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489
+DG++L S P+L+ + K A
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDL---------------SSNPLLYMMRCFPGVPEQKLRAHL 611
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
V LA + LSGGQK R+A A+ K P ILLLDE
Sbjct: 612 GSFGVTGNLALQPMY-----------------TLSGGQKSRVAFAKITFKKPHILLLDEP 654
Query: 550 TSALDAES-EKVVQ 562
++ LD ++ E ++Q
Sbjct: 655 SNHLDLDAVEALIQ 668
|
Length = 718 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 9e-08
Identities = 47/207 (22%), Positives = 88/207 (42%), Gaps = 44/207 (21%)
Query: 411 SGTTAALVGQSGSGKSTVISLIE--------RFYDPQAGEVLID---GINLKEF------ 453
G LVG +G GKST + ++ +F DP + ++D G L+ +
Sbjct: 25 EGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLE 84
Query: 454 -QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512
++ I K V P G + + + + +E+ +D+L +
Sbjct: 85 GDVKVIVKP-QYVDLIPKAVKGKVGELLKKKDERGKLDEL------------VDQL--EL 129
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA----ESEKVVQEALDRI 568
++ + QLSGG+ QR+AIA A+ +D DE +S LD + ++++E
Sbjct: 130 RHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE---LA 186
Query: 569 MVNRTTVIVAHRLSTVRNADMIA-VIH 594
+ ++V H L+ + D ++ IH
Sbjct: 187 EDDNYVLVVEHDLAVL---DYLSDYIH 210
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 1e-07
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQK 1111
V+V +NL+I AL+G SGSGKST++ + R + P+A G + LDG +I K
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFK 74
Query: 1112 LQLKWLRQQMGLVSQEP-VLFNDTIRANIAYG 1142
+ + LR+++ +V Q P + N +I N+A G
Sbjct: 75 MDVIELRRRVQMVFQIPNPIPNLSIFENVALG 106
|
Length = 250 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-07
Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 996 ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE--------IELHH 1047
I + + +S + KAKS + + R ++ P +E + +E +
Sbjct: 267 IRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFEN 326
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107
VS Y + +DL+ +I G +A+VG +G+GKST++ LL P +G + +
Sbjct: 327 VSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-- 382
Query: 1108 EIQKLQLKWLRQ-QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAA 1155
+ +++ + Q + L + VL + + D E E++A
Sbjct: 383 --ETVKIGYFDQHRDELDPDKTVL--EELSEG-----FPDGDEQEVRAY 422
|
Length = 530 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 1e-07
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-K 1115
Q+ ++L + G+ VAL+G +G+GK+T++ + P +G I DG +I L +
Sbjct: 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE 71
Query: 1116 WLRQQMGLVSQEPVLFND-TIRANI---AYGKGGDATEAEIQAASEM 1158
R +G V + +F + T+ N+ AY + +A ++ E+
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYEL 118
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 1e-07
Identities = 35/101 (34%), Positives = 58/101 (57%), Gaps = 6/101 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++ K R QV D++L I +G+ VAL+G SGSGK+T++ ++ +GHI
Sbjct: 3 IEIANIK-KSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
G ++ +L + +++G V Q LF T+ NIA+G
Sbjct: 60 RFHGTDVSRLHAR--DRKVGFVFQHYALFRHMTVFDNIAFG 98
|
Length = 353 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 1043 IELHHVSFKYPS------RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+E+ V+ Y + + V +++L I G+TV L+G SG GKST+ LL
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 1097 PDAGHITLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFN--DTIRANIA 1140
P G ++ G ++ +L Q + R+ + LV Q+ P N T+R I
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIG 112
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 8/76 (10%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-------TLDGVEIQK 1111
V ++++L + AG+ VAL G SG+GKST++ L Y PD+G I +D +
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 1112 LQLKWLRQQ-MGLVSQ 1126
++ +R++ +G VSQ
Sbjct: 82 REVLEVRRKTIGYVSQ 97
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 39/152 (25%), Positives = 74/152 (48%), Gaps = 20/152 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I ++S+ S ++ ++L +R G+ +A++G +G+GKST++ L PD+G +
Sbjct: 2 IRAENLSY---SLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRA-----NIAYGKGGDATEAEIQAAS 1156
TL+GV + + L + ++ Q L F T++ I + G + E E AA
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 1157 EMAN------AHKFICSL-----QQVRTSRLL 1177
+A A + +L Q+V+ +R+L
Sbjct: 119 ALAATDLSGLAGRDYRTLSGGEQQRVQLARVL 150
|
Length = 259 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 1e-07
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++ + ++ Y + +V D++L ++ G+ +G +G+GK+T + ++ PD+G I
Sbjct: 1 LKTNDLTKTYGKK---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
T DG QK +++G + + P + N T R N+
Sbjct: 58 TFDGKSYQKNIEAL--RRIGALIEAPGFYPNLTARENLRL 95
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-07
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
D V ++L +R G V LVG +G+GK+T++ + P AG + + G +++ L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 1114 LKWLRQQMGLVSQEPVL-FNDTIRANIAYGK---------GGDATEAEIQAASEMANAHK 1163
+ +++ V Q+ L F +R + G+ + A ++ A E +
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQ 131
Query: 1164 F----ICSLQQVRTSRLLL 1178
F + SL R+LL
Sbjct: 132 FADRPVTSLSGGERQRVLL 150
|
Length = 402 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 1e-07
Identities = 96/453 (21%), Positives = 165/453 (36%), Gaps = 51/453 (11%)
Query: 708 RRLAYLNKPEIPVILAGTIA-AMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALI 766
+ L + P I A +IA +A G+ + + + + I + L + S F
Sbjct: 6 GEILALLRSPFPAITAFSIALGLAGGLAI----IALLASINNAIHEENFLGQGSLFS--- 58
Query: 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARL 826
+ L + L F A AG +I +R EK++ + D + + L
Sbjct: 59 FGGLCLLALLFRIGADIFPAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLL 116
Query: 827 SADAASVRALVGDALARIVQNISTAAAGLIIAFTA--SWQLALIILVMLPLIGVSGYTQM 884
+ D + A I+ A IA+ A S + I + + +IG + +
Sbjct: 117 THDIDQINAF---LFIFPPIAIALAIFFFCIAYLAYLSVPMFAITISAI-IIGTAAQL-L 171
Query: 885 KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944
FM GF + EE DA +F A+E ++++ + + I++
Sbjct: 172 AFMGGFKFFHAARDEE------DAFNEHTHAIAFGAKE--LKIHGIRRLSFAHGAIQESA 223
Query: 945 VS--------------GGGFGA-SFFLLF--AFYAASFYAGARLVEDGKATFSDVFKVFF 987
+ FG FFLL A +AA+ +A D A + V + +
Sbjct: 224 NNIADLHIIEILIFIAAENFGQLLFFLLIGCALFAAAMFA----SIDAAAISAFVLALLY 279
Query: 988 SLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVK---GEIE 1044
+ +S + + A + E +++ SD +L IE
Sbjct: 280 IKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIE 339
Query: 1045 LHHVSFKYPSRPDVQVFR--DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
L V + + F ++L+I G V +VGE+G GKST+ L Y P G I
Sbjct: 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI 399
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135
LDG + R + + LF+D I
Sbjct: 400 LLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI 432
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 16/64 (25%), Positives = 34/64 (53%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
L ++ + +D++ +I G+ V ++G +G+GKST++ L+ Y P +G +
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 1103 TLDG 1106
+ G
Sbjct: 85 KVTG 88
|
Length = 249 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I L +VS+ YP ++NL I+ G+ + ++G++GSGKST+ L P G +
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1103 TLDGVEIQKL-QLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ G++ +L+ +R+ +G+V Q P T+ ++A+G
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG 102
|
Length = 274 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-07
Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 5/99 (5%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122
D++L I G+ AL+G SG GKST++ +L F P AG I LDGV++ + ++ +
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPIN 94
Query: 1123 LVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA-ASEM 1158
++ Q LF + T+ NIA+G K +AEI + +EM
Sbjct: 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEM 133
|
Length = 377 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI---QKLQLKWLRQQMGLV 1124
+ GKT+A+VGESG GKST+ LL P G + G ++ K LRQ++ +V
Sbjct: 38 LERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIV 97
Query: 1125 SQEP 1128
Q P
Sbjct: 98 FQNP 101
|
Length = 327 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 2e-07
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PD 1098
E+ + +F Y +R V DLNL I+ K A +G SG GKST + L + D
Sbjct: 82 EIRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 1099 AGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G I G +K+ LR ++G+V Q+P F +I N+AYG
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYG 186
|
Length = 329 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ L VS+ R V +++ G L+G +GSGKST++ LL PDAG
Sbjct: 1 GLRLSRVSWSAGGRLIVD---GVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQE-PVLFNDTIRANIAYGK 1143
+ L GV++ L + +++ LV Q+ T+R +A G+
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGR 100
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ ++S +Y R +V ++L ++ G+ V L+G +G+GK+T ++ PD+G I
Sbjct: 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGL--VSQEPVLFND-TIRANI 1139
LDG +I KL + R ++G+ + QE +F T+ NI
Sbjct: 58 LLDGQDITKLPMH-KRARLGIGYLPQEASIFRKLTVEENI 96
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 61/258 (23%), Positives = 98/258 (37%), Gaps = 72/258 (27%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG-- 463
+ I G + G SGSGKS++I + Y A + + + I
Sbjct: 15 DVDIPLGVLTCVTGVSGSGKSSLI--NDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKV 72
Query: 464 -LVSQEPV-------------LFTGSIKD----------------NIAY-GKD-----DA 487
++ Q P+ +F I++ + Y GK D
Sbjct: 73 IVIDQSPIGRTPRSNPATYTGVFD-EIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDM 131
Query: 488 TTEEIRVATELANAAKFIDKLPQ---GIDTLV---------GEHGTQLSGGQKQRIAIAR 535
T EE A +F + +P+ + TL G+ T LSGG+ QRI +A+
Sbjct: 132 TVEE---------ALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAK 182
Query: 536 AILKDPR---ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMIA 591
+ K + +LDE T+ L K + E L R++ TV+V H L ++ AD I
Sbjct: 183 ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWII 242
Query: 592 VI------HRGKIVEKGT 603
+ G++V GT
Sbjct: 243 DLGPEGGDGGGQVVASGT 260
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 1006 SNKAKSAAASIFAIIDRESKIDPSDESGT-ILEDVKGEIELHHVSFKYPSRPDVQVFRDL 1064
+N ++ S +I + D +D SG + IE ++ Y D Q D+
Sbjct: 2 TNNEMTSDESSDGLITTTTATDTTDPSGDPAASSGETVIEARDLNVFYG---DEQALDDV 58
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DA----GHITLDGVEI--QKLQLKWL 1117
++ I + A++G SG GKST + + R D DA G +T G + + L
Sbjct: 59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118
Query: 1118 RQQMGLVSQEPVLFNDTIRANIAYG 1142
R+++G+V Q+P F +I N+AYG
Sbjct: 119 RRRIGMVFQKPNPFPKSIYDNVAYG 143
|
Length = 285 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 3e-07
Identities = 25/106 (23%), Positives = 56/106 (52%), Gaps = 9/106 (8%)
Query: 1042 EIELHHVSFKYPSRP---DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYD 1096
+ +++ S P Q+ ++++ K + G+ A++G SG+GKST+++ L +R
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
+G + ++G + L + R+ +G V Q+ +L T+R + +
Sbjct: 63 GVSGEVLING---RPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF 105
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 3e-07
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104
L +VSF+ P R + L+L AGK L+G +GSGKST++ +L R P G I L
Sbjct: 14 LRNVSFRVPGRTLLH---PLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 1105 DGVEIQKLQLK-WLRQQMGLVSQEPVLFNDTIRANIAYGK 1143
D ++ K + R+ L Q P T+R +A G+
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGR 110
|
Length = 265 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 23/116 (19%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ V+ + D + +++ ++ G+ L+G +G+GK+T ++ +P G I
Sbjct: 3 LEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQA 1154
T +G + + + ++G + +E L+ T+ + Y KG E + +
Sbjct: 60 TWNGGPLSQEI----KNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL 111
|
Length = 300 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI-- 1109
+ +++NL I + A++G SG GKST + L R + G I I
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ ++ LR +G+V Q+P F +I N+ YG
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYG 128
|
Length = 271 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 4e-07
Identities = 37/127 (29%), Positives = 72/127 (56%), Gaps = 11/127 (8%)
Query: 1043 IELHHVSFKY-PSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I+ V++ Y P+ P + D++L+++ G AL+G +GSGKST++ L P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1101 HITLDGVEI----QKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYGK---GGDATEAE 1151
+T+ + + ++ ++K +R+++G+V Q P LF +T+ ++A+G G +AE
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 1152 IQAASEM 1158
AA ++
Sbjct: 122 KIAAEKL 128
|
Length = 288 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106
F+ + VQ ++ ++ G+ L+G +G+GK+T + +L +PDAG T+DG
Sbjct: 8 TKRFRDVKKT-VQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG 66
Query: 1107 VEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEI 1152
++ K + R+++G VS L++ T R N+ Y G GD A +
Sbjct: 67 FDVVKEPAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARL 117
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 11/122 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I HVS Y Q + + +R G+ L G SG+GKST++ L+ P AG I
Sbjct: 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI 59
Query: 1103 TLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQ 1153
G +I +L ++ +LR+Q+G++ Q+ L D T+ N+A G GD +
Sbjct: 60 WFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVS 119
Query: 1154 AA 1155
AA
Sbjct: 120 AA 121
|
Length = 222 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHIT 1103
+ +P V+ D++ RAG+ AL+GE+G+GKST++ +L Y PDAG I
Sbjct: 6 SFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 1104 LDGVEIQ 1110
+DG E++
Sbjct: 63 IDGQEMR 69
|
Length = 501 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 6e-07
Identities = 40/167 (23%), Positives = 68/167 (40%), Gaps = 20/167 (11%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--- 454
+ +F SI+ + G +G GKS+++ +I P +G + N+
Sbjct: 13 QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPY 71
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
+I +GL + V +N+ + EI + E AA KL
Sbjct: 72 CTYIGHNLGLKLEMTVF------ENLKF------WSEIYNSAETLYAAIHYFKL----HD 115
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
L+ E LS G ++ +AIAR I + LLDE + L E+ ++
Sbjct: 116 LLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL 162
|
Length = 195 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK 1111
+ + ++++ K AL+G SGSGKST + L R D G I G++I +
Sbjct: 32 KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINR 91
Query: 1112 --LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ + +R+ +G+V Q P F +I NI +
Sbjct: 92 KEINVYEMRKHIGMVFQRPNPFAKSIYENITFA 124
|
Length = 267 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 9e-07
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVE 1108
S + + ++L + AL+G SG GKST + L R D + G I +G
Sbjct: 13 SYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQN 72
Query: 1109 I--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
I K+ L LR+++G+V Q+P F ++ N+AYG
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYG 108
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 9e-07
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-- 1119
+D +L I G+ ++G SGSGKST+V LL R +P G + +DGV+I K+ LR+
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 1120 --QMGLVSQEPVLF-NDTIRANIAYG 1142
++ +V Q L + T+ N A+G
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFG 130
|
Length = 400 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 9e-07
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA- 1099
G I + H+ Y + V DL+L+I AG+ +AL+G+SG GK+T++ + F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 1100 -GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
G I + ++ ++ + L+ Q LF + + N+A+G
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFG 103
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQ--K 1111
D+ + I + AL+G SG GKST++ R D P G I +G I
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG 79
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR+++G+V Q P F +I N+AYG
Sbjct: 80 ADVVALRRKIGMVFQRPNPFPKSIYENVAYG 110
|
Length = 253 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 10/107 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----P 1097
I L +V+ Y + V +++ I GK AL+G SG GKSTV+ L R D
Sbjct: 14 ISLQNVTISYGTFEAV---KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 1098 DAGHITLDGVEIQKLQLK--WLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + DG ++ ++ +R+++G+V Q+P F +I NIA+G
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG 117
|
Length = 269 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA----GHITLDGVEIQKLQLKWLR 1118
DLNL ++ G+ +ALVGESGSGKS + P G I LDG + L L
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL--LPLSIRG 61
Query: 1119 QQMGLVSQEP 1128
+ + + Q P
Sbjct: 62 RHIATIMQNP 71
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLK 1115
V ++++ +R G+T+ LVGESGSGKST L R G I DG + L QL
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLL 358
Query: 1116 WLRQQMGLVSQEP 1128
+R ++ +V Q+P
Sbjct: 359 PVRHRIQVVFQDP 371
|
Length = 529 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +V+ ++ V D++ + G+ L+G +G+GK+T + ++ PD+G +
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 1103 TLDG 1106
DG
Sbjct: 58 LFDG 61
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+EL + YPS V+V + ++L I AG+ VA+VG SGSGKST++++L P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 1102 ITLDGVEIQKL---QLKWLRQQ 1120
+ G ++ L L LR++
Sbjct: 65 YRVAGQDVATLDADALAQLRRE 86
|
Length = 648 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-------TLDGVEIQKL 1112
V R+++L + AG+ V L G SGSGKST++ L Y PD G I +D V +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 1113 QLKWLRQQ-MGLVSQ 1126
++ +R+ +G VSQ
Sbjct: 86 EVLEVRRTTIGYVSQ 100
|
Length = 235 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 12/73 (16%)
Query: 1042 EIELHHVSFKYPSR-----PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+EL +V+F Y P +NL I+ G+ + L+G +GSGKST+ LL Y
Sbjct: 322 TLELRNVTFAYQDNGFSVGP-------INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 1097 PDAGHITLDGVEI 1109
P +G I LDG +
Sbjct: 375 PQSGEILLDGKPV 387
|
Length = 547 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-06
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 1076 LVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDT 1134
L+G SG GK+T++ LL F PD+G I LDG ++ + + + +V Q LF + T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 1135 IRANIAYG 1142
+ N+A+G
Sbjct: 59 VEENVAFG 66
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 31/108 (28%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD----- 1096
+I++ +++ Y + Q ++++++I AL+G SG GKST + L R D
Sbjct: 12 QIKVENLNLWYGEK---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 1097 PDAGHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G ++++G +I + + LR+ +G+V Q+P F +I N+AYG
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG 116
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L+ ++ Y + Q D+ L G+T+ L+G SG+GKS+++ +L P +G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1103 TLDG------VEIQKLQLKWLRQQMGLVSQE 1127
+ G ++ LR+ +G+V Q+
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
|
Length = 242 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 1020 IDRESKIDPSDESGTILEDVKGE--IELHHVSFKYPSRP--------DVQVFRDLNLKIR 1069
++ +K +P E T+ V GE +++ ++ ++P R +V ++ +
Sbjct: 292 LEHPAKQEPPIEQDTV---VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLW 348
Query: 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL---QLKWLRQQMGLVSQ 1126
G+T++LVGESGSGKST L R + G I +G I L +L+ LR+ + + Q
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408
Query: 1127 EP 1128
+P
Sbjct: 409 DP 410
|
Length = 623 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG-----VEIQKL--- 1112
RD++ + G+ + +VGESGSGK+T+++ L PDAG + ++ L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1113 QLKWL-RQQMGLVSQEP 1128
+ + L R + G V Q P
Sbjct: 82 ERRRLLRTEWGFVHQHP 98
|
Length = 258 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
+N K+R G+ +G +G+GK+T + +L P +G + G ++ + + + +R+ +
Sbjct: 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSI 68
Query: 1122 GLVSQEPVLFND-TIRANIA-----YGKGGDATEAEI 1152
G+V Q + D T R N+ YG D E
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERA 105
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 19/163 (11%)
Query: 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLK------EFQLQWI 458
+ + + AL+G++G+GKST++ + Y +G +L G I+ K E + +
Sbjct: 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78
Query: 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518
+++ LV Q V+ DN+ G+ + + D+L ID
Sbjct: 79 HQELNLVLQRSVM------DNMWLGRYPTKGMFVDQDKMYRDTKAIFDEL--DIDIDPRA 130
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
LS Q Q I IA+A + +I+++DE TS+L +EK V
Sbjct: 131 KVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL---TEKEV 170
|
Length = 491 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KL 1112
S P V+ ++NLK+R AL+GE+G+GKST++ L Y D+G I G EI K
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 1113 QLKWLRQQMGLVSQE 1127
+ L + +V QE
Sbjct: 67 SKEALENGISMVHQE 81
|
Length = 491 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 27/93 (29%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI-- 1109
+ + +++ +KI + A++G SG GK+T++ + R D P G I G +I
Sbjct: 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYD 74
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+L + R+++G+V Q+P F +I N+A+G
Sbjct: 75 PQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFG 107
|
Length = 250 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ---KLQLK 1115
QV D+NL+I G+ V L G SGSGK+T+++L+ G + + G E+ + +L
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 1116 WLRQQMGLVSQ 1126
LR+ +G + Q
Sbjct: 79 QLRRNIGYIFQ 89
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 9/79 (11%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKS-TVVSLLQRFYDPDA----GHITLDGVEIQKLQ 1113
V D++L+I AG+T+ALVGESGSGKS T +S+L+ P G I G +
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 1114 LKWLRQ----QMGLVSQEP 1128
+ LR ++ ++ QEP
Sbjct: 83 EQTLRGVRGNKIAMIFQEP 101
|
Length = 529 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +S Y + RD++ + G+ + +VGESGSGKST++ L PD G
Sbjct: 4 LQVSGLSKSYGGG---KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA 60
Query: 1103 TL---DGVEIQKLQL------KWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
T G E++ QL + +R + G V Q P D +R ++ G
Sbjct: 61 TYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPR---DGLRMRVSAG 106
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-06
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG---VEIQK-LQLKWLR 1118
D N + A AL G SGSGK+++++++ PD G I L+G V+ +K + L +
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 1119 QQMGLVSQEPVLF-NDTIRANIAYG 1142
+++G V Q+ LF + T+R N+ YG
Sbjct: 76 RRIGYVFQDARLFPHYTVRGNLRYG 100
|
Length = 352 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 4e-06
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA- 1099
+E+ +S Y + + D+++ I AL+G SG GKST + + R D P A
Sbjct: 22 LEVKDLSIYYGEK---RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 1100 --GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141
G I +G+ I + + LR+++G+V Q+P F +I NI +
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITH 124
|
Length = 268 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 14/104 (13%)
Query: 1043 IELHHVSFKY---PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
++L +++ Y P R +L + G+ VA++G SG+GKST+++L+ F P +
Sbjct: 2 LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
G +TL+G + R+ + ++ QE LF+ T+ NI G
Sbjct: 54 GSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLG 95
|
Length = 232 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 4e-06
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 12/91 (13%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL------ 1114
RD++ + G+ + +VGESGSGK+T++ + PDAG +T + Q L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 1115 ---KWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR + G V Q P D +R ++ G
Sbjct: 82 ERRRLLRTEWGFVHQNPR---DGLRMQVSAG 109
|
Length = 258 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 4e-06
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-- 1117
RD++ ++RAG+ V + G G+G++ + L P +G ITLDG + + +
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 1118 ---------RQQMGLVSQEPVLFNDTIRA 1137
R++ GLV V N + +
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIALSS 103
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 16/87 (18%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-------- 1110
+V + ++L+ AG ++++G SGSGKST + + P AG I ++G EI+
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 1111 -----KLQLKWLRQQMGLVSQEPVLFN 1132
K QL+ LR ++G+V Q FN
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQH---FN 103
|
Length = 256 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 35/115 (30%), Positives = 61/115 (53%), Gaps = 6/115 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L VS Y + V L+ + +G+ L+G +G+GKST+ ++ PDAG I
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRAN-IAYGKGGDATEAEIQAA 1155
T+ GV + + + R ++G+V Q L + T+R N + +G+ + EI+A
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV 152
|
Length = 340 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 5e-06
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
NL++R + V+L+G +G+GK+TV + L FY P G I L G I+ L
Sbjct: 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL 72
|
Length = 255 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-- 1099
+I++ V+F Y QV +++N+ + A++G SG GKST++ L R D +
Sbjct: 4 KIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 1100 ---GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + LD I L + LR+++G+V Q+P F +I N+A+G
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG 108
|
Length = 251 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 6e-06
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
+ +NL I+ G+ ++L+G SG GKST+++L+ P +G + L+G +I +
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE 51
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 6e-06
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQL 1114
++ + +NL I+ G+ AL+G +GSGKST+ + Y+ G I G +I L
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 1115 KWLRQQMG--LVSQEPV 1129
+ R ++G L Q P
Sbjct: 72 E-ERARLGIFLAFQYPP 87
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 6/92 (6%)
Query: 1043 IELHHVS--FKYPS----RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+E+ ++S F+Y + R V+ + L+ +R G+T+A++GE+GSGKST+ +L +
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
P +G + +D + + Q++ ++ Q+P
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP 96
|
Length = 267 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-06
Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVV 1088
+ + L DVK +L V+F P DV DLN +RAG+T+ +VGESGSGKS
Sbjct: 5 AQQQADALLDVK---DLR-VTFSTPD-GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTA 59
Query: 1089 SLLQRFYDPD---AGHITLDGVEIQKL---QLKWLR-QQMGLVSQEP 1128
L + G T +G EI L +L LR +Q+ ++ Q+P
Sbjct: 60 FALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106
|
Length = 330 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 65/232 (28%)
Query: 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVI----SLIERFYDPQAGEVLI 445
+ + R I FS + G ++G+ GSG ST++ + E + G++
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVE-GDIHY 69
Query: 446 DGINLKEFQLQWIRKKIGLVSQE----PVLFTGSIKDNIAYGKDDATTEE-IRVATELAN 500
+GI KEF ++ + I VS+E P L T E + A
Sbjct: 70 NGIPYKEFAEKYPGEII-YVSEEDVHFPTL----------------TVRETLDFALRC-- 110
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+G + + G +SGG+++R++IA A++ +L D +T LD+ +
Sbjct: 111 ---------KGNEFVRG-----ISGGERKRVSIAEALVSRASVLCWDNSTRGLDSST--- 153
Query: 561 VQEALDRIMVNRTTVIVAHRLSTVRNA-------------DMIAVIHRGKIV 599
AL+ + RT +A L T D + V++ G+ +
Sbjct: 154 ---ALEILKCIRT---MADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Query: 1043 IELHHVSFKYPSRPDVQ---VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
I+ +VS+KY S + D+NL+++ G+ + ++G +GSGKST+ + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 1100 GHITLDGVEIQKLQLKW-LRQQMGLVSQEP 1128
G + +DG++ + W +R + G+V Q P
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNP 94
|
Length = 280 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 7e-06
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KW 1116
+Q R ++L++ G+ VAL+G +G+GK+T++ + P +G I DG +I L +
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHER 75
Query: 1117 LRQQMGLVSQEPVLFND-TIRANIAYG 1142
R + V + +F T+ N+ G
Sbjct: 76 ARLGIAYVPEGRRIFPRLTVEENLLLG 102
|
Length = 237 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 8e-06
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QK 1111
+ + ++L + AL+G SG GKST + L R D P G+++L G I
Sbjct: 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR+Q+G+V Q+P F +I N+ YG
Sbjct: 79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYG 109
|
Length = 252 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-06
Identities = 45/160 (28%), Positives = 86/160 (53%), Gaps = 25/160 (15%)
Query: 412 GTTAALVGQSGSGKSTVIS-LIERFYDP--QAGEVLIDGINLKE-FQLQWIRKKIGLVSQ 467
GT AL+G SG+GK+T+++ L ER G+ L++G L FQ + IG V Q
Sbjct: 789 GTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQ-----RSIGYVQQ 843
Query: 468 EPV-LFTGSIKDNIAYGKDDATTEEIRVATELANAAK--FIDK------LPQGIDTLVGE 518
+ + L T ++++++ + + +R ++ + K ++++ + D +VG
Sbjct: 844 QDLHLPTSTVRESLRF------SAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILL-LDEATSALDAES 557
G L+ Q++R+ I ++ P++LL LDE TS LD+++
Sbjct: 898 PGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQT 937
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE + + Y + ++N +A++G +G+GKST+ P +G +
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG 1142
+ G I K ++ +R+ +GLV Q P +F+ T+ +IA+G
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG 103
|
Length = 277 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 27/103 (26%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 1043 IELHHVS-FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +++ + +Q +++L + AG+ ++G SG+GKST++ + P +G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQE-PVLFNDTIRANIA 1140
+ +DG ++ L +L R+Q+G++ Q +L + T+ N+A
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVA 104
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 16/102 (15%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ V+ ++ + V LN + AG+ VAL+G SGSGKST++ +L D G I
Sbjct: 1 VRFSDVTKRFG---ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQI 57
Query: 1103 TLDGVEIQKLQ-------------LKWLRQQMGLVSQEPVLF 1131
++G ++ + L+ +R ++G+V Q LF
Sbjct: 58 QVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLF 99
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 1e-05
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 1031 ESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSL 1090
E+G EDV ++S Y D + +D+ +KI ++G SGSGKST++ +
Sbjct: 2 EAGKSAEDV------FNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKV 55
Query: 1091 LQRFYDPDAGHITLD------GVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141
L R + I +D G +I ++ LR+++G+V Q+P F + +I NIAY
Sbjct: 56 LNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAY 113
|
Length = 257 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 31/108 (28%), Positives = 62/108 (57%), Gaps = 12/108 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+++++SF Y ++ ++ ++++I K A++G SG GKST + L R + + +
Sbjct: 8 IKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63
Query: 1103 TLDG-VEI-------QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
++G VE +++ L LR+Q+ +V +P LF ++ N+AYG
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYG 111
|
Length = 261 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 66/290 (22%), Positives = 116/290 (40%), Gaps = 30/290 (10%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
+L+D++F + S + G ++G +GSGKST+ +LI P G V
Sbjct: 23 KLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD 82
Query: 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504
I G I GL Q + +K + + E I E A+ KF
Sbjct: 83 IKG------SAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKF 136
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
I Q + T S G K R+ A ++ +P IL++DEA S D K +
Sbjct: 137 IY---QPVKTY--------SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDK 185
Query: 565 LDRIMVN-RTTVIVAHRLSTVRNADMIAV-IHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
++ +T ++H LS V++ A+ +H G++ E G ++V+ Y + L+
Sbjct: 186 MNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH----YDEF--LK 239
Query: 623 EANKESEQTIDGQRKSEISMESLRH---SSHRMSLRRSISRGSSIGNSSR 669
+ N+ S + + + E + +H + R +G +
Sbjct: 240 KYNQMSVE--ERKDFREEQISQFQHGLLQEDQTGRERKRKKGKKTSRKFK 287
|
Length = 549 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 10/70 (14%)
Query: 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR- 567
PQ ID LSGG+ QR+AIA A+L++ L DE ++ LD E A+ R
Sbjct: 67 PQYID---------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL 117
Query: 568 IMVNRTTVIV 577
+ T +V
Sbjct: 118 SEEGKKTALV 127
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 2e-05
Identities = 68/317 (21%), Positives = 129/317 (40%), Gaps = 38/317 (11%)
Query: 841 LARIVQNISTAAAGLIIAFTASWQ-LALIIL----VMLPLIGVSGYTQMKFMKGFSADAK 895
LA + I +A +I+A W L +L VM+ ++ ++ MK K + A
Sbjct: 431 LATYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNAVMAMK-TKTYQV-AH 488
Query: 896 MKYEEAS-QVANDAVGSIRTVASFCAE----EKVMQLYKKKCEAPMKTGIRQGMVSGGGF 950
MK ++ ++ N+ + I+ + + E +KV + +++ + K+ + +
Sbjct: 489 MKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWV 548
Query: 951 GASFFLLFAFYAASFYAGARLVEDGKATFSDV--FKVF-FSLTMTAIGISQSSSFSSDSN 1007
F + +A + D + F + F + F L + + IS S
Sbjct: 549 CTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLK 608
Query: 1008 KAKSAAASIFAIIDRESKIDP-SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNL 1066
+ + I +++P S E TI I +H+ +F + +R +
Sbjct: 609 RLR--------IFLSHEELEPDSIERRTIKPGEGNSITVHNATFTW-ARDLPPTLNGITF 659
Query: 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQ 1126
I G VA+VG+ G GKS+++S L D GH+ + G + V Q
Sbjct: 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-------------SVAYVPQ 706
Query: 1127 EPVLFNDTIRANIAYGK 1143
+ + ND++R NI +GK
Sbjct: 707 QAWIQNDSLRENILFGK 723
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QKLQL 1114
+++ L I + A +G SG GKST++ R D P G +T G + +
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+R+++G+V Q+P F +I NIAYG
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYG 114
|
Length = 264 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +LNL I+ G V L+G SG GK+TV+ L+ P G I +DG ++ ++ ++
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QR 78
Query: 1120 QMGLVSQEPVLF-NDTIRANIAYG 1142
+ +V Q LF + ++ N+ YG
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYG 102
|
Length = 351 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 10/107 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA--- 1099
I++ +SF Y + ++ +++ I K A++G SG GKST + L R + +
Sbjct: 8 IKVKDLSFYYNTSKAIE---GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 1100 --GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
G + G I ++ + LR+Q+G+V Q P F +I N+AYG
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYG 111
|
Length = 259 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-05
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQKLQLKW- 1116
D++LKI A K +A +G SG GKST++ R D P A G + I Q+
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 1117 -LRQQMGLVSQEPVLFNDTIRANIAYG 1142
LR+Q+G+V Q P F +I NIA+
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFA 124
|
Length = 274 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 23/91 (25%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 1042 EIELHHVSFKYPS----RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097
E+ +F+Y + R V+ + ++ +R G+T+A++GE+GSGKST+ +L +P
Sbjct: 6 EVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65
Query: 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
+G I ++ + + +++ ++ Q+P
Sbjct: 66 TSGEILINDHPLHFGDYSFRSKRIRMIFQDP 96
|
Length = 267 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 23/88 (26%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ ++ KY D + R ++ ++R G+ L+G +G+GK+T + +L P +G
Sbjct: 1 IEVENLVKKYG---DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRA 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130
T+ G ++ + + + +R+++G+V Q+ +
Sbjct: 58 TVAGHDVVR-EPREVRRRIGIVFQDLSV 84
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
H K S VQ D++ +I G+ V +G +G+GKST + +L P +G + ++
Sbjct: 28 HFFHRKERSIEAVQ---DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN 84
Query: 1106 GVEIQKLQLKWLRQQMGLV 1124
G + + + ++LR +GLV
Sbjct: 85 GKDPFRRREEYLR-SIGLV 102
|
Length = 325 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 46/171 (26%), Positives = 74/171 (43%), Gaps = 28/171 (16%)
Query: 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454
+R E +F + +G + G +G+GK+T++ ++ ++G++ IDG
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEI---------RVATELANAAKFI 505
+ + + P L K D +T E R A ++ +A I
Sbjct: 80 RS---RFMAYLGHLPGL------------KADLSTLENLHFLCGLHGRRAKQMPGSALAI 124
Query: 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
L DTLV QLS GQK+R+A+AR L + LLDE + LD E
Sbjct: 125 VGLAGYEDTLV----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 3e-05
Identities = 29/82 (35%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEIQK 1111
D Q +++NL ++ G AL+G SG GK+T + + R +D P A G I LDG +I
Sbjct: 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYG 75
Query: 1112 LQLK--WLRQQMGLVSQEPVLF 1131
++ +R+++G+V Q+P F
Sbjct: 76 PRVDPVAMRRRVGMVFQKPNPF 97
|
Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD---AGH 1101
L +VS + P + ++N I G+ V L+G SG GKST++S + G
Sbjct: 5 LKNVSLRLPGSC---LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131
+ L+ + L ++Q+G++ Q+ +LF
Sbjct: 62 LWLNEQRLDMLPAA--QRQIGILFQDALLF 89
|
Length = 213 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
SR + +F L+ + AG+ + + G +G GK+T++ +L PD+G + +G + + +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 1114 LKWLRQ 1119
+ R
Sbjct: 69 DEPHRN 74
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 62/235 (26%), Positives = 110/235 (46%), Gaps = 33/235 (14%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEV 443
E+R++ P P+ + S S+ G + G G+G++ ++ + Y + GE+
Sbjct: 261 EVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEI 320
Query: 444 LIDGINLK-EFQLQWIRKKIGLVSQE-------PVLFTGSIKDNIAYGKDDATTEEIRV- 494
IDG +K Q I + I +V ++ PV+ + NI D T R+
Sbjct: 321 FIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM---GVGKNITLAALDRFTGGSRID 377
Query: 495 -ATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A EL + I +L + T E +LSGG +Q+ +A+ +L +P+IL+LDE T
Sbjct: 378 DAAELKTILESIQRLK--VKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435
Query: 553 LD--AESE------KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598
+D A+ E ++VQ+ + I+ ++ L V +D + V+H GK+
Sbjct: 436 IDVGAKYEIYKLINQLVQQGVAIIV-------ISSELPEVLGLSDRVLVMHEGKL 483
|
Length = 506 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 3e-05
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 8/53 (15%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--------YDPDAGHITL 1104
V R+LNL+I+ G VA+VG+SG+GK+T++ ++ Y PD+G + +
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV 450
|
Length = 593 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-05
Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 501 AAKFIDKLP---QGIDTLV---------GEHGTQLSGGQKQRIAIARAILKD---PRILL 545
A +F + +P + + TL G+ T LSGG+ QRI +A+ + K + +
Sbjct: 796 AYEFFEAVPSISRKLQTLCDVGLGYIRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYI 855
Query: 546 LDEATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTVRNADMIAVI------HRGKI 598
LDE T+ L + K + E L R++ TV+V H L ++ AD I + G +
Sbjct: 856 LDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIEHNLDVIKTADYIIDLGPEGGDGGGTV 915
Query: 599 VEKGT 603
V GT
Sbjct: 916 VASGT 920
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-05
Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 34/122 (27%)
Query: 1000 SSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE----------------- 1042
S FS++++KAK A + R +ID LE+VK
Sbjct: 270 SRFSANASKAKQATS-------RAKQIDK-----IKLEEVKPSSRQNPFIRFEQDKKLHR 317
Query: 1043 --IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+E+ +++ + + P +F++LNL + AG+ +A++GE+G GK+T++ L +PD+G
Sbjct: 318 NALEVENLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG 374
Query: 1101 HI 1102
+
Sbjct: 375 TV 376
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 48/215 (22%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS---QEPVL-F 472
LVG++G+GKST++ ++ GEVL+D + ++ + + I V+ Q+P
Sbjct: 34 LVGRNGAGKSTLMKIL-------NGEVLLD-----DGRIIYEQDLI--VARLQQDPPRNV 79
Query: 473 TGSIKDNIAYG---------------KDDATTEEIRVATELANAAKFID-----KLPQGI 512
G++ D +A G T + ELA + +D +L I
Sbjct: 80 EGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRI 139
Query: 513 DTLVGEHG-------TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
+ ++ + G + LSGG ++ A+ RA++ +P +LLLDE T+ LD E+ + ++ L
Sbjct: 140 NEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFL 199
Query: 566 DRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
+ + ++H S +RN A I + RGK+V
Sbjct: 200 --KTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 70/262 (26%), Positives = 111/262 (42%), Gaps = 48/262 (18%)
Query: 394 PARPNEQIFSGFSISISS--GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451
P N+ F+ IS+ + G LVG +GSGKST+ ++I P G+V +G
Sbjct: 30 PKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG---- 85
Query: 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKL-PQ 510
++ I GL Q TG +NI E ++ + K I + P+
Sbjct: 86 --EVSVIAISAGLSGQ----LTGI--ENI----------EFKMLC-MGFKRKEIKAMTPK 126
Query: 511 GID-TLVGEHGTQ----LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
I+ + +GE Q S G + ++ + I +P IL++DEA S D + Q+ L
Sbjct: 127 IIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCL 183
Query: 566 DRIM----VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI- 619
D+I N+T V+H L VR IA I GK+ + G ++D Y +
Sbjct: 184 DKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGE----LDDVLPKYEAFLN 239
Query: 620 ----RLQEANKESEQTIDGQRK 637
+ + KE +D R
Sbjct: 240 DFKKKSKAEQKEFRNKLDESRF 261
|
Length = 264 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L+ ++ Y + Q D+ L G+T+ L+G SG+GKS+++ +L P +G +
Sbjct: 3 IQLNGINCFYGAH---QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 1103 TLDGVEIQ------KLQLKWLRQQMGLVSQE 1127
+ G ++ LR+ +G+V Q+
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ 90
|
Length = 242 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 1048 VSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
VS +Y R V L+L I AG+ VA+VG SG GKST++ LL P AG +
Sbjct: 18 VSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL 69
|
Length = 257 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 6/115 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L VS Y D V DL+ I G+ L+G +G+GKST+ +L PD G I
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRAN-IAYGKGGDATEAEIQAA 1155
T+ G + + + R +G+V Q L + T+R N + +G+ + EI+A
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAV 115
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+ R ++L++ G+ ++G +G GK+T++ L +G I LDG +I KL
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL 67
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 28/90 (31%), Positives = 53/90 (58%), Gaps = 7/90 (7%)
Query: 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
+E+HH+ K + + + + + L ++ G+T+AL+GESGSGKST++++L D +G
Sbjct: 7 VEVHHLK-KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSG 65
Query: 1101 HITLDGVEIQKL---QLKWLR-QQMGLVSQ 1126
++L G + ++ LR + +G V Q
Sbjct: 66 EVSLVGQPLHQMDEEARAKLRAKHVGFVFQ 95
|
Length = 228 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI-- 1109
D + ++N+KI AL+G SG GKST + L R D G++ +G I
Sbjct: 19 DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYS 78
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR+++G+V Q P F +I NI+YG
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYG 111
|
Length = 254 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA- 1099
I++ ++ Y S V+ D+NL I A +G SG GKSTV+ L R ++ P A
Sbjct: 5 IDVKDLNIYYGSFHAVE---DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 1100 --GHITLDGVEI--QKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
G + LDG ++ + +R+ +G+V Q P F +IR N+ G
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAG 109
|
Length = 258 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-05
Identities = 42/141 (29%), Positives = 66/141 (46%), Gaps = 25/141 (17%)
Query: 500 NAAKF---IDKLPQGIDTLV---------GEHGTQLSGGQKQRIAIARAILK---DPRIL 544
A +F I K+ + + TLV G+ T LSGG+ QR+ +A+ + K +
Sbjct: 788 EALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLY 847
Query: 545 LLDEATSALDAESEKVVQEALDRIMVNRTTVIV-AHRLSTVRNADMIAVI------HRGK 597
+LDE T+ L + K + E L R++ TVIV H L ++ AD I + G+
Sbjct: 848 ILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGE 907
Query: 598 IVEKGTHSKLVEDPE---GAY 615
IV GT ++ + G Y
Sbjct: 908 IVASGTPEEVAKVKASYTGKY 928
|
Length = 935 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 6e-05
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI--QK 1111
+++NL I + A++G SG GKST + L P+ G + +G I K
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ L LR+ +G+V Q+ F +I N+AYG
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQSIFDNVAYG 116
|
Length = 259 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 6e-05
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 5/98 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+ +V +Y D V L+ ++ G+ L+G +G+GK+T + +L PDAG I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI 1139
+L G + + + RQ++G+V Q L D T+R N+
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDPDFTVRENL 101
|
Length = 306 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 6e-05
Identities = 32/119 (26%), Positives = 59/119 (49%), Gaps = 10/119 (8%)
Query: 1050 FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
F+ RP V LN+ + A +G +G+GK+T +S+L P +G + + G +I
Sbjct: 938 FEPSGRPAVD---RLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFND-TIRANIAY-----GKGGDATEAEIQAASEMANAH 1162
+ L +RQ +G+ Q +LF+ T+ +I + G+ + + E++A E H
Sbjct: 995 ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLH 1052
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 7e-05
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 15/110 (13%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEI--QKLQL 1114
RD ++ IR + +G SG GKSTV+ L R D GH+ G ++ + +
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYG------KG--GDATEAEIQAAS 1156
+R+ +G+V Q+P F+ +I N+A+G KG GD + +Q A+
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAA 134
|
Length = 261 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 8e-05
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 9/78 (11%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKST----VVSLLQRFYDPDAGHITLDGVEIQKLQL 1114
+V D++L + +G+ V L+G +G+GK+T VV ++ R DAG+I +D +I L L
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR----DAGNIIIDDEDISLLPL 72
Query: 1115 -KWLRQQMGLVSQEPVLF 1131
R+ +G + QE +F
Sbjct: 73 HARARRGIGYLPQEASIF 90
|
Length = 241 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 9e-05
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDA 1099
EI+ HV ++ + +NL ++ G+ A++G +GSGKST+ + Y+
Sbjct: 5 EIKDLHVE----VEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTE 60
Query: 1100 GHITLDGVEI 1109
G I DG +I
Sbjct: 61 GEILFDGEDI 70
|
Length = 251 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 1e-04
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 28/116 (24%)
Query: 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD------- 1096
E++ ++F Y Q +++N+ + + AL+G SG GKST + R +D
Sbjct: 18 EVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 1097 -------PDAGHI---TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
PD +I +D +E+ R ++ +V Q+P F +I N+AYG
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEV--------RMRISMVFQKPNPFPKSIFENVAYG 122
|
Length = 265 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK-- 1111
R + +F DL+ + AG+ + + G +G+GK+T++ +L PDAG + G IQ
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 1112 ----LQLKWLRQQMGL 1123
L +L Q G+
Sbjct: 71 ESYHQALLYLGHQPGI 86
|
Length = 209 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
R +F L+ + AG+ + L G +GSGK+T++ L+ P AG I LDG +I
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDI 66
|
Length = 207 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 22/222 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID---GINLKEFQLQWIRKKI 462
S+++++G + A VG +GSGKS + + +GE L QLQ
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQ------ 76
Query: 463 GLVSQEPVLFTGSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQ--GIDTLVGE 518
LVS E + + D ++ G+DD TT EI + E+ + A+ ++L Q GI L+
Sbjct: 77 KLVSDE---WQRNNTDMLSPGEDDTGRTTAEI-IQDEVKDPAR-CEQLAQQFGITALLDR 131
Query: 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT-VIV 577
LS G+ ++ + +A++ +P +L+LDE LD S + + E L + + T V+V
Sbjct: 132 RFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLV 191
Query: 578 AHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
+R + + V+ + E G ++++ + +QL
Sbjct: 192 LNRFDEIPDFVQFAGVLADCTLAETGEREEILQ--QALVAQL 231
|
Length = 490 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-04
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 1054 SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109
+ P V+ L + G+ +ALVGE+G+GKST++ +L Y DAG I G E+
Sbjct: 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEV 68
|
Length = 501 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 89/368 (24%), Positives = 146/368 (39%), Gaps = 78/368 (21%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
DI + + S R + I S++++ G LVG++G+GK+T + R+ A
Sbjct: 177 DIHMENFSISVGGR--DLIVDA-SVTLAFGRHYGLVGRNGTGKTTFL----RYMAMHA-- 227
Query: 443 VLIDGI-------------------------NLKEFQLQWIRKKIGLVSQ------EPVL 471
IDGI N + Q + ++ LV+Q E
Sbjct: 228 --IDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETET 285
Query: 472 FTGSIKDNIAYGKDDATT--EEIRVATEL-------ANAAKFIDKLPQGIDTLVGEHGTQ 522
G + KD + EEI EL A AA + L + V T
Sbjct: 286 GKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKT- 344
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR-- 580
SGG + RIA+ARA+ +P +LLLDE T+ LD + ++ L + +T ++V+H
Sbjct: 345 FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSHARE 402
Query: 581 -LSTVRNADMIAVIHRGKIVE-KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKS 638
L+TV I +H K+V KG + E + E+N+ S +
Sbjct: 403 FLNTV--VTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHM------ 454
Query: 639 EISMESLRHSSHRMSLRRS-------ISRGSSIGNSSRHSISVSF-----GLPSGQFADT 686
+ ++ R+++ R SL +S + ++ N + G P F+D
Sbjct: 455 QAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPIISFSDA 514
Query: 687 ALGEPAGP 694
+ G P GP
Sbjct: 515 SFGYPGGP 522
|
Length = 718 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-04
Identities = 51/203 (25%), Positives = 95/203 (46%), Gaps = 36/203 (17%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISL---------IERFYDPQAGEVLIDGINL 450
Q+ + + G AL+G SG+GK+T++ + IE G++ I G
Sbjct: 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE-------GDIRISGFPK 946
Query: 451 KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAK--FIDK 507
K+ I G Q + ++++++ Y + +R+ E++ K F+D+
Sbjct: 947 KQETFARIS---GYCEQNDIHSPQVTVRESLIY------SAFLRLPKEVSKEEKMMFVDE 997
Query: 508 LPQGI------DTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
+ + + D +VG G T LS Q++R+ IA ++ +P I+ +DE TS LDA + +
Sbjct: 998 VMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1057
Query: 561 VQEAL-DRIMVNRTTVIVAHRLS 582
V + + + RT V H+ S
Sbjct: 1058 VMRTVRNTVDTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 44/200 (22%), Positives = 78/200 (39%), Gaps = 39/200 (19%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
I S T +VGQ+G+GK+T +I+ + G
Sbjct: 17 EIEFFSPLTL-IVGQNGAGKTT----------------IIEALKYALTGEL-PPNSKGGA 58
Query: 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA--NAAKFIDKLPQG-IDTLVGEHGTQ 522
++ G ++ + ++A ++ + LA F QG + + + +
Sbjct: 59 HDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFC---HQGESNWPLLDMRGR 115
Query: 523 LSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM------V 570
SGG+K R+A+A + IL LDE T+ LD E+ ++E+L I+
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIEERKSQK 172
Query: 571 NRTTVIVAHRLSTVRNADMI 590
N +++ H V AD I
Sbjct: 173 NFQLIVITHDEELVDAADHI 192
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 1053 PSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-- 1110
R V +D++ ++RAG+ V + G +G+G+S +V + P +G I L+G ++
Sbjct: 266 KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325
Query: 1111 ----KLQLKWL------RQQMGLVSQEPVLFN 1132
+ + L R GLV + N
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAEN 357
|
Length = 501 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+ L+L+I G V ++G +G+GKST+++ + P +G I +DGV++ K
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
|
Length = 263 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-04
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV------- 1107
+ + R+L+ ++ G+T+A+VGESGSGKS L R + G + D +
Sbjct: 26 QQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSR 85
Query: 1108 ------EIQKLQLKWLR-QQMGLVSQEPV 1129
E Q++ +R M ++ QEP+
Sbjct: 86 QVIELSEQSAAQMRHVRGADMAMIFQEPM 114
|
Length = 623 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E ++S ++ + V +++L + L+G +G+GKST++ ++ P +G I
Sbjct: 1 LETKNLSKRFGKQTAVN---NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI 1139
DG + L ++G + + P L+ + T R N+
Sbjct: 58 IFDGHPWTRKDLH----KIGSLIESPPLYENLTARENL 91
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-04
Identities = 36/145 (24%), Positives = 72/145 (49%), Gaps = 31/145 (21%)
Query: 1042 EIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
+I++ ++ + + +++ +++++I G+ +A++G++GSGK+T + L PD
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 1100 GHI------------------TLDGVEIQKL------QLKWLRQQMGLVSQ--EPVLFND 1133
G I L+ + IQK ++K +R+++G+V Q E LF
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 1134 TIRANIAYGK---GGDATEAEIQAA 1155
TI +I +G G EA+ +AA
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAA 146
|
Length = 305 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 16/114 (14%)
Query: 504 FIDKLPQGID------TLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDA 555
FID+L ID TL + T LSGG+ QR+ +A + +P + +LDE ++ L
Sbjct: 64 FIDQLQFLIDVGLGYLTLGQKLST-LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122
Query: 556 ESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMI------AVIHRGKIVEKG 602
+ + E + ++ TVI+ H L + +AD I + GK+V G
Sbjct: 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI-- 1109
+ + + +N I + A++G SG GKST + + R D P G + DG +I
Sbjct: 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYG 110
Query: 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
+ LR+++G+V Q+P F +I NIAYG
Sbjct: 111 KFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYG 143
|
Length = 286 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L +VS + R +V D++L+++ GK + L+G +G+GKST+V ++ PD G I
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 1103 TLD-----GVEIQKLQL 1114
+ G QKL L
Sbjct: 62 KRNGKLRIGYVPQKLYL 78
|
Length = 251 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQE 1127
I G+ V LVG++G GKST+++LL+ D G T G QL W+ Q+ + Q
Sbjct: 24 INPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAWVNQETPALPQ- 78
Query: 1128 PVLFNDTIRANIAYGKGGD----ATEAEIQAASEMANAH 1162
+ Y GD EA++ A+E + H
Sbjct: 79 ---------PALEYVIDGDREYRQLEAQLHDANERNDGH 108
|
Length = 638 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 522 QLSGGQKQRIAIARAI---LKDPRIL-LLDEATSALDAESEKVVQEALDRIMVNRTTVIV 577
QLSGG+K+ A+A + PR L +LDE LD + + EA+ +V VIV
Sbjct: 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIV 136
Query: 578 A-HRLSTVRNADMIAVIHRGKIVEKGTH 604
H AD +IH K++
Sbjct: 137 ITHLPELAELAD--KLIHIKKVITGVYK 162
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108
S +V+ + ++ I G+ V +G +G+GK+T + +L P +G + + G+
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV 84
Query: 1109 IQKLQLKWLRQQMGLV 1124
K + K+LR ++G+V
Sbjct: 85 PWKRRKKFLR-RIGVV 99
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------Q 1113
+F L+ + AG+ V + G +G+GK++++ +L PDAG + G I++
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75
Query: 1114 LKWLRQQMGL 1123
L +L Q G+
Sbjct: 76 LLYLGHQPGI 85
|
Length = 204 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 19/195 (9%)
Query: 400 QIFSGFSISISSGTTAALVGQSGSGKST----VISLIERFYDPQAGEVLIDGINLKEFQL 455
I I G ++G+ GSG ST + S + F+ G + DGI +E +
Sbjct: 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKK 134
Query: 456 QWIRKKIGLVSQE----PVLFTGSIKDNIAYGKDDAT-----TEEIRVATELANAAKFID 506
+ R + ++ P L G D A K + E A +A+
Sbjct: 135 HY-RGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEY-AKHIADVYMATY 192
Query: 507 KLPQGIDTLVGEHGTQ-LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEAL 565
L +T VG + +SGG+++R++IA A L +I D AT LD+ + AL
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 566 DRIMVN--RTTVIVA 578
+ N TT +VA
Sbjct: 253 -KTSANILDTTPLVA 266
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 1050 FKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG--V 1107
F+Y D V + LNL LVG +G GKST+ L P G + G +
Sbjct: 9 FRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 1108 EIQKLQLKWLRQQMGLVSQEP--VLFNDTIRANIAYG-KGGDATEAEI 1152
+ K L LRQQ+ V Q+P +F I ++IA+ + EAEI
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEI 113
|
Length = 271 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ VS Y +Q +++L I G+ V L+G +G+GK+T++ L +G I
Sbjct: 6 LSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 1103 TLDGVEIQKLQL-KWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
DG +I Q K +R+ + +V + +F+ T+ N+A G
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMG 104
|
Length = 237 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 43/219 (19%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQ------LQW 457
S ++ G + G G+G++ ++ ++ +G V +DG + + Q + +
Sbjct: 272 SFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVY 331
Query: 458 I---RKKIGLVSQEPVLFTGSIKDNI---AYGKDDATTEEIRVATELANAAKFID----K 507
I RK+ GLV S+K+N+ A ++ A E + FI K
Sbjct: 332 ISEDRKRDGLV------LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK 385
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV------ 561
P ++ +G LSGG +Q++AIAR ++ P++L+LDE T +D ++K +
Sbjct: 386 TP-SMEQAIGL----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ 440
Query: 562 --QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
E L I+V+ V + +D I V+H G+I
Sbjct: 441 FKAEGLSIILVSSEMPEV------LGMSDRILVMHEGRI 473
|
Length = 501 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
H ++F SR + VF L+ + AG+ + + G++G+GK+T++ +L ++G I +D
Sbjct: 15 HALAF---SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQID 71
Query: 1106 G 1106
G
Sbjct: 72 G 72
|
Length = 214 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PD---AGHITLDGVEI--QKLQL 1114
++L + AL+G SGSGKST++ + R D P+ G I +G I +
Sbjct: 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81
Query: 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
LR+++G+V Q+P F +I N+ YG
Sbjct: 82 VDLRKEIGMVFQQPNPFPMSIYENVVYG 109
|
Length = 252 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 7e-04
Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 12/100 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I + + F + S+ D+NL+I G VA+VG +G GK++++S + + H
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML----GELSHA 670
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142
V I R + V Q +FN T+R NI +G
Sbjct: 671 ETSSVVI--------RGSVAYVPQVSWIFNATVRENILFG 702
|
Length = 1495 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-04
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 16/89 (17%)
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVV-SLLQRFYDPDAGHITLDGVEIQ 1110
+ P V + RD+++ + GK ++G +GSGKST++ SLL +F EI
Sbjct: 668 FELEPKV-LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-------------EIS 713
Query: 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+ ++ W + + V Q+ + N T+R NI
Sbjct: 714 EGRV-WAERSIAYVPQQAWIMNATVRGNI 741
|
Length = 1560 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 7e-04
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 13/81 (16%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-------- 1110
+V + ++L+ AG ++++G SGSGKST + + P G I ++G I
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 1111 -----KLQLKWLRQQMGLVSQ 1126
K QL+ LR ++ +V Q
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQ 99
|
Length = 257 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-04
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQKL 1112
D ++ + +NL ++ G+ A++G +GSGKST+ + Y+ +G I G ++ +L
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGH-ITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129
G+ + +VG GSGK+T+ L R P G I +DG +I + L L + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61
Query: 1130 LFNDTIR 1136
+R
Sbjct: 62 SGELRLR 68
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 18/78 (23%), Positives = 39/78 (50%), Gaps = 7/78 (8%)
Query: 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQK 1111
++ D++L + +G+ +A++G SGSGK+T++ + + G I +G +
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP 76
Query: 1112 LQLK----WLRQQMGLVS 1125
Q + ++RQ L+
Sbjct: 77 DQFQKCVAYVRQDDILLP 94
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLK 1115
V +++ I G+ +A+VG SGSGKST++ LL P +G + +G + KL + +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 1116 WLRQQMGLVSQEPVLFND-TIRANIAYGK--GGDATEAEIQAASEMANA 1161
Q++G + Q L D T N+A G A EM A
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAA 132
|
Length = 233 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-04
Identities = 59/212 (27%), Positives = 94/212 (44%), Gaps = 25/212 (11%)
Query: 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG--INLKEFQLQWIRKKI 462
S S+ +G L G G+G+S ++ L+ AG+V +DG I+++ + IR I
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPR-DAIRAGI 330
Query: 463 GLV----SQEPVLFTGSIKDNI---AYGKDDATTEEIRVATELANAAKFIDKL---PQGI 512
L E ++ S+ DNI A I E NA +FI L
Sbjct: 331 MLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD--AESE--KVVQEALDRI 568
+ L+ LSGG +Q+ + R + +D +++LLDE T +D A+ E V+ E +
Sbjct: 391 EQLIM----NLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ- 445
Query: 569 MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
+ V+ L V AD I V+ G+I
Sbjct: 446 --GVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
|
Length = 501 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QK 1111
V + ++LKI AL+G SG GKST++ R + +A G + L G I
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 1112 LQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
+ +R+++G+V Q P F + TI N+A G
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIG 109
|
Length = 253 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 18/91 (19%)
Query: 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKL 1112
V+ +++LK+RAG+ V+L GE+G+GKST++ +L Y P G I +G ++L
Sbjct: 16 GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EEL 71
Query: 1113 QLKWLR-----------QQMGLVSQEPVLFN 1132
Q +R Q++ LV + VL N
Sbjct: 72 QASNIRDTERAGIAIIHQELALVKELSVLEN 102
|
Length = 506 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 19/57 (33%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
LSGG+K R+ + +++ P +L++DE T+ +D ES + + AL+ T + V+H
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE--KYEGTLIFVSH 493
|
Length = 530 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 17/62 (27%), Positives = 38/62 (61%), Gaps = 5/62 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAG 1100
IE+ +++ K+ +V ++++ I G+ + ++G SG+GKS ++ +L+ Y+P +G
Sbjct: 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 1101 HI 1102
I
Sbjct: 58 RI 59
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 40/220 (18%)
Query: 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGINLKEFQLQWI 458
F S+ + +G L G G+G++ L E Y + G ++++G +
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRT---ELAETLYGLRPARGGRIMLNGKEINALSTA-Q 334
Query: 459 RKKIGLV-----SQEPVLF--------TGSIKDN-----IAYGKDDATTEEIRVATELAN 500
R GLV Q L+ ++ N I +++A E R A +
Sbjct: 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNI-- 392
Query: 501 AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560
KF Q TL SGG +Q++ IA+ + P++L++DE T +D +
Sbjct: 393 --KFNH-AEQAARTL--------SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARND 441
Query: 561 VQEALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKI 598
+ + + I V+ ++ L + AD + V+H+G+I
Sbjct: 442 IYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
|
Length = 510 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 44/189 (23%), Positives = 84/189 (44%), Gaps = 30/189 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE ++ + + + S + G ++G +G+GKST+ +I P +G +
Sbjct: 323 IEAENLSKGFGDKL---LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 444 LI-DGINLKEFQLQWIRKKIGLVSQEPVLFTG--SIKDNIAYGKDDATTEEIRVATELAN 500
I + + K+ V Q ++ + I+ G D I++
Sbjct: 380 KIGETV------------KLAYVDQSRDALDPNKTVWEEISGGLD-----IIQLGKREVP 422
Query: 501 AAKFIDKLP-QGID--TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ ++ + +G D VG QLSGG++ R+ +A+ + +LLLDE T+ LD E+
Sbjct: 423 SRAYVGRFNFKGSDQQKKVG----QLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
Query: 558 EKVVQEALD 566
+ ++EAL
Sbjct: 479 LRALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 51/225 (22%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERF-YDPQA-GEVLIDGINLK-EFQLQWIRKKI 462
S S+ G G GSG++ +++ + F D +A GE+ ++G ++ L ++K +
Sbjct: 283 SFSVCRGEILGFAGLVGSGRTELMNCL--FGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340
Query: 463 GLVSQ---EPVLFTG-SIKDNIAY------GKDDATTEEIRVATELANAAKFIDKLPQGI 512
+++ + F SI N+A G E A + L
Sbjct: 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400
Query: 513 DTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD----AESEKVVQEALDRI 568
+ V ++ T+LSGG +Q++ I++ + P +++ DE T +D AE KV+++ D
Sbjct: 401 HS-VNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD- 458
Query: 569 MVNRTTVIVAHRLSTVRNA-DMIAVIHRGKIVEKGTHSKLVEDPE 612
+ ++V+ L + D IAV G++ + T+ + + E
Sbjct: 459 --GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEE 501
|
Length = 510 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579
LSGG++ R+ +AR LK +L+LDE T+ LD E+ ++++E LD T ++V+H
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS--YQGTVLLVSH 495
|
Length = 635 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 13/83 (15%)
Query: 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119
V +++NLKI G+ +A+ G +GSGK++++ L+ +P G I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 1120 QMGLVSQEPVLFNDTIRANIAYG 1142
++ SQ + TI+ NI +G
Sbjct: 99 RISFSSQFSWIMPGTIKENIIFG 121
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--PDA---GHITLDGVEI--QKLQL 1114
+D+++ A++G SG GKSTV+ + R +D P A G I LD +I + +
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 1115 KWLRQQMGLVSQEPVLF 1131
+R+++G+V Q+P F
Sbjct: 81 VSIRRRVGMVFQKPNPF 97
|
Length = 252 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD---- 1098
IEL +++ ++P V ++L ++ G+ +ALVG SGSGKS +
Sbjct: 5 IELRNIAL-QAAQPLV---HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 1099 AGHITLDGVEIQKLQLK 1115
AG + LDG + L+
Sbjct: 61 AGRVLLDGKPVAPCALR 77
|
Length = 254 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 48/179 (26%), Positives = 78/179 (43%), Gaps = 48/179 (26%)
Query: 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465
+ +I+ G LVG++G GKST+++L++ G G +QL W V
Sbjct: 21 TATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAW-------V 69
Query: 466 SQE-PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE------ 518
+QE P L +++ I D E ++ +L +A + D I T+ G+
Sbjct: 70 NQETPALPQPALEYVI-----DGDREYRQLEAQLHDANERNDG--HAIATIHGKLDAIDA 122
Query: 519 -----------HG-----TQL-------SGGQKQRIAIARAILKDPRILLLDEATSALD 554
HG QL SGG + R+ +A+A++ +LLLDE T+ LD
Sbjct: 123 WTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
IEL ++S P + +DL+ +I+ G + + G SG+GKS+
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSS 42
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.004
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
FR+++L++RAG+ + L G G+G++ + L G I L+G EI L R
Sbjct: 279 FRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA-QRLA 337
Query: 1121 MGLV 1124
GLV
Sbjct: 338 RGLV 341
|
Length = 510 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQ 1113
V+ ++L++R G+ V L GE+G+GKST++ +L Y P G I G ++
Sbjct: 13 GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASN 71
Query: 1114 LKWL-RQQMGLVSQEPVLFND-TIRANIAYG 1142
++ R + ++ QE L + ++ NI G
Sbjct: 72 IRDTERAGIVIIHQELTLVPELSVAENIFLG 102
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1178 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.98 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.98 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.98 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.98 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.97 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.96 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.95 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.94 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.94 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.94 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.93 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.92 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.92 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.92 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.91 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.91 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.9 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.9 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.9 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.89 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.89 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.89 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.89 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.89 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.88 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.88 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.88 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.88 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.88 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.87 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.87 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.87 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.87 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.87 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.86 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.86 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.86 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.86 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.86 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.86 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.86 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.86 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.85 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.85 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.85 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.85 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.85 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.85 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.85 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.84 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.84 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.84 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.84 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.84 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.84 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.84 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.84 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.83 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.83 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.83 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.83 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.83 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.83 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.83 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.83 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.83 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.82 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.82 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.82 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.82 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.82 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.82 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.82 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.82 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.82 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.81 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.81 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.81 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.81 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.81 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.81 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.81 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.81 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.81 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.81 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.81 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.81 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.81 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.81 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.81 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.81 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.81 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-177 Score=1608.08 Aligned_cols=1109 Identities=56% Similarity=0.915 Sum_probs=1008.4
Q ss_pred cchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1178)
..+++++|+|..+.++.+++++++++++.++++|++.+++|++++.+...+.. ...+....++++++++|++.++..|+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~lg~~~~~~~~~ 90 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-IASSEVSKVALYFVYLGVGVFISGFI 90 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999999999999999999999999999999999988765432 33345667888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
+..||.+.+.|...++|..++++++|++++|||.. .+|++.+++++|++.|++.+++.+..+++.+.++++.+++.|+.
T Consensus 91 q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985 77999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
.|+++++++.+.|++.+....+.+.+.+...+.++.++++.+...|++.++|||.+|+.|+.+.++|.+.+....+...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
..++.++..++..++.++.+++.+|+|+.++..+..++|.+++++..++.....+++..|++..+..+..++.++++.++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999888898899999999999999999999999999999
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
..|+..+....+......+|.|+|+||+|+||+|++.++|+|+||+|++||+++|||||||||||++++|.|+|+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 98877655433334455689999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.|||.|+++++.+|+|++||.|.|+|.||++||+|||.||.|+++.+++.++|+++++++++..+|+|++|.+||+|.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
|||||||||||||||+++|+||||||||||||+++++.++++|++..+|||+|+||||++++++||+|+||++|+|+|.|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCC
Q 001041 603 THSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQ 682 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1178)
+|+||++.+ |.|.++++.|+.....++ .++.+ +. .+....+. + ... +... .. +.. ... . .
T Consensus 570 ~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~-~~~~~--~~-~~~~~~s~-~--~s~--~~~~---~~-~~~-~~~-~----~ 629 (1228)
T KOG0055|consen 570 THDELIALG-GIYSSLVRLQELEKAAED-EEEEE--SL-KEERSRSL-K--SSS--SSPS---LS-RGS-NRS-N----L 629 (1228)
T ss_pred CHHHHHhcc-chHHHHHHHHhhhhhhhc-ccccc--ch-hhhhhhcc-c--ccc--cccc---cc-CCc-ccc-c----c
Confidence 999999995 999999999876554332 01000 00 00000000 0 000 0000 00 000 000 0 0
Q ss_pred CCcccCCCCCCCCCCCCCCCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc-hhhhhhH
Q 001041 683 FADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH-ELKKDSR 761 (1178)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 761 (1178)
.......+...... ........+++++.+.+|.|++++++++++++.++..|++++.++.++..+...++ .......
T Consensus 630 ~~~~~~~e~~~~~~--~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~ 707 (1228)
T KOG0055|consen 630 LSVKPEGEDPEEPV--SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVR 707 (1228)
T ss_pred cccccccccccccc--ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 00000000000000 11114566888999999999999999999999999999999999999998875443 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHH
Q 001041 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1178)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l 841 (1178)
.|.++|++++++..++.+++.+++..++++++.++|.++|+++++++++|||.++|+ |.|.+|+.+|...++..+.+.+
T Consensus 708 ~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl 786 (1228)
T KOG0055|consen 708 AWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRL 786 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999898 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccch
Q 001041 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE 921 (1178)
Q Consensus 842 ~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e 921 (1178)
..+++++..++.++++.|+++|+|+++++++.|++++..+.+.+++....++.++...+.+....|++++++||++|++|
T Consensus 787 ~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e 866 (1228)
T KOG0055|consen 787 SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAE 866 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 001041 922 EKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSS 1001 (1178)
Q Consensus 922 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~ 1001 (1178)
+++.+.|.+.++...+...|...+.+..+++++++.++.+++++|+|++++.+|.+++.+++.++..+.+....+++...
T Consensus 867 ~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s 946 (1228)
T KOG0055|consen 867 EKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASS 946 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCC
Q 001041 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081 (1178)
Q Consensus 1002 ~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SG 1081 (1178)
+.+++.++..++.++++++|.+|.+++..+.+...++.+|+|+|+||+|+||+||+.+||+|+||+|++||+||||||||
T Consensus 947 ~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 947 YAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred hCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCC
Confidence 99999999999999999999998776654344445668999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCc
Q 001041 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161 (1178)
Q Consensus 1082 SGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~ 1161 (1178)
|||||++.||.|||||++|.|.|||+||+++++++||++|++|.|||.||++||||||.||.. ++|++||.+|||.||+
T Consensus 1027 sGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~-~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSE-EVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCC-CCCHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999943 5999999999999999
Q ss_pred hHHHhhcccccccccc
Q 001041 1162 HKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1162 ~dfI~~LP~gldT~v~ 1177 (1178)
|+||.+||+||||+||
T Consensus 1106 H~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1106 HNFISSLPQGYDTRVG 1121 (1228)
T ss_pred HHHHhcCcCcccCccC
Confidence 9999999999999997
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-144 Score=1419.96 Aligned_cols=1120 Identities=28% Similarity=0.462 Sum_probs=912.1
Q ss_pred ccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1178)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1178)
.++++..+|+|..+.++.+++++++++++.+++.|+++++++.+++.+.... ....+++.+++++++.+++.|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~-------~~~~~~~~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE-------NVNDIIFSLVLIGIFQFILSF 115 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999754211 122334556677888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
++.+++.+.+.+...++|.+++++++++|++|||.. +.|++++++++|++.++..+...+..++..+..+++.++++++
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999975 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 001041 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1178)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1178)
++|.+++++++++|+++++..++.+..++..+..++..++..+.+.|.++|+++||+|+.|+.+.++|.+......+...
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~ 274 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888888888888999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEE--------GYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1178)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1178)
+.....++..++..++..+.+++.+|+|++++..+ .++++.+++++...+.....+..+.+.+..+..+..+
T Consensus 275 k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a 354 (1466)
T PTZ00265 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEA 354 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777777777888889999999988875 4778888877766666666667778888999999999
Q ss_pred HHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
+.|+++.++.+++.+... .+...+. .+.|+++||+|+|+++++.++|+|+||+|++||+++||||||||||||+++|+
T Consensus 355 ~~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 355 TNSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999998876643211 1111122 24799999999998655557999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEE-CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC---------------------------
Q 001041 434 RFYDPQAGEVLI-DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--------------------------- 485 (1178)
Q Consensus 434 g~~~~~~G~i~i-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--------------------------- 485 (1178)
|+|+|++|+|.+ ||+++++++..++|++|+||+|+|.+|++||+|||.+|.+
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 6799999999999999999999999999999999999742
Q ss_pred ------------------------------CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 486 ------------------------------DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 486 ------------------------------~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+.++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 24568899999999999999999999999999999999999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCC-----------------
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRG----------------- 596 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G----------------- 596 (1178)
|++++|+|||||||||+||+++++.+++.++++. +++|+|+||||++++..||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999886 479999999999999999999999986
Q ss_pred ------------------------------EEEEecChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhh
Q 001041 597 ------------------------------KIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLR 646 (1178)
Q Consensus 597 ------------------------------~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (1178)
+|+|+|+|+||++..++.|+.+++.|........................
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYK 752 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccc
Confidence 59999999999986689999999876543211100000000000000000
Q ss_pred cccccccccccccCCCCCCCCCCcccccccCCCCCCCCcccCCCCCCCCCCCC----CCCCcchhHhhhhhcCChhHHHH
Q 001041 647 HSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTE----EVAPEVPTRRLAYLNKPEIPVIL 722 (1178)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 722 (1178)
.................. .. +...............+.....+.....+ ........++++.+.+++++.++
T Consensus 753 ~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1466)
T PTZ00265 753 DSERGYDPDEMNGNSKHE-NE---SASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVT 828 (1466)
T ss_pred cccccccccccccccccc-cc---ccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHH
Confidence 000000000000000000 00 00000000000000000000000000000 00011123334444555666688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 723 AGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFE 802 (1178)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 802 (1178)
++++++++.+++.|+++++++.+++.++.. .........|.+++++++++..++.+++.++..+++.++..++|.++|+
T Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~ 907 (1466)
T PTZ00265 829 IIALSILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFE 907 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999877532 1112224456777777888888999999999999999999999999999
Q ss_pred HHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001041 803 KVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882 (1178)
Q Consensus 803 ~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~ 882 (1178)
+++++|++|||++++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++......
T Consensus 908 ~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 987 (1466)
T PTZ00265 908 NILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAI 987 (1466)
T ss_pred HHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999656899999999999999999999999999999999999999999999999988876555444333222
Q ss_pred HHHHHhhhH-H--------------HHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 001041 883 QMKFMKGFS-A--------------DAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1178)
Q Consensus 883 ~~~~~~~~~-~--------------~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1178)
..+...... + ..++..++.+..++|++.|+++||+|+.|+++.++|.+..+...+...+.....+
T Consensus 988 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1466)
T PTZ00265 988 RARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNS 1067 (1466)
T ss_pred HHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111000 0 0123356678899999999999999999999999999999999999999999889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCC
Q 001041 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1178)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 1027 (1178)
...++..++..+..++++|+|++++..|.+++|++++++.+..+...++..+.++...++++..+++|++++++.+++.+
T Consensus 1068 ~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~ 1147 (1466)
T PTZ00265 1068 MLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNID 1147 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC
Confidence 99999999888889999999999999999999999998877777667788899999999999999999999999876442
Q ss_pred CCCCCCCc---ccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-------
Q 001041 1028 PSDESGTI---LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP------- 1097 (1178)
Q Consensus 1028 ~~~~~~~~---~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p------- 1097 (1178)
..+..... ++...|+|+|+||+|+||++++.+||+|+||+|+|||+|||||+||||||||++||+|||||
T Consensus 1148 ~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~ 1227 (1466)
T PTZ00265 1148 VRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIV 1227 (1466)
T ss_pred CCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccc
Confidence 21111111 12346889999999999876666899999999999999999999999999999999999999
Q ss_pred -----------------------------------------------CCCeEEECCcccCCCChHHHHHhcccccccccc
Q 001041 1098 -----------------------------------------------DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1178)
Q Consensus 1098 -----------------------------------------------~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~L 1130 (1178)
++|+|+|||+||+++++++||++|++|||||+|
T Consensus 1228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1228 FKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcc
Confidence 699999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1131 F~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|||||||+||+ +++|||||++|||.|++||||++||+||||.|+
T Consensus 1308 F~gTIreNI~~g~-~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VG 1353 (1466)
T PTZ00265 1308 FNMSIYENIKFGK-EDATREDVKRACKFAAIDEFIESLPNKYDTNVG 1353 (1466)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCccccCCccC
Confidence 9999999999996 479999999999999999999999999999986
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-144 Score=1352.62 Aligned_cols=995 Identities=22% Similarity=0.267 Sum_probs=763.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhc---cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 127 WMITGERQATRIRGLYLKTILRQDVAFFDN---ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1178)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~il~~~~~~f~~---~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1178)
+.+...+.+.++|..+...++++.+..-.. ..+.|+|+|.|++|++++++........+...+..+++...+...++
T Consensus 262 ~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w~~Plqi~~~l~lLy~~LG 341 (1381)
T KOG0054|consen 262 YFFVSFRVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLWSAPLQIILALYLLYGLLG 341 (1381)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344567899999998887777776543221 23799999999999999999887666666666666666656666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
|. +++.++++.+++.+..++.+.+++.+.+.++..++|.+.++|.++|||+||+|+||+.|.++..+.++++.+..++.
T Consensus 342 ~s-a~~G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~ 420 (1381)
T KOG0054|consen 342 PS-ALAGVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKS 420 (1381)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 63 44555566667777888889999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKL-ILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
.+..++......+...+..++ .++.+. ...+.+++..+|+.+..+-.+..++..++..+..+.++.++.+|+.+++.
T Consensus 421 ~~~~~~~~~~~~~~p~lv~~~--tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~ 498 (1381)
T KOG0054|consen 421 AYLSALNSFLNFFSPVLVSVV--TFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLL 498 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888777665443333222222 222222 33556788788887777777778888877789999999999999999997
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.++. ++......+..+.+..|+++|.+|+|+.....+.|+||||+|++|+++||||++|||||||+++|+|+++..+|+
T Consensus 499 ~~e~-~~~~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~ 577 (1381)
T KOG0054|consen 499 SEEL-DPDSVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGS 577 (1381)
T ss_pred Cccc-CccccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccce
Confidence 7543 222211112223344699999999998644456999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.++| .+|||||+||+|+|||||||+||.| +++++++++.+.|+|++|++.||.||.|+|||+|.|
T Consensus 578 v~v~g-------------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGin 643 (1381)
T KOG0054|consen 578 VAVNG-------------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPFGDLTEIGERGIN 643 (1381)
T ss_pred EEEcC-------------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccC
Confidence 99999 7999999999999999999999987 789999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHH-HHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV-VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~-i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1178)
|||||||||+||||+|+|+||||||||+||||+|+.++ +.+||+.++++||+|+|||+++++++||+|++|++|+|.+.
T Consensus 644 LSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 644 LSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred CcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecc
Confidence 99999999999999999999999999999999998764 56889999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCC
Q 001041 602 GTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSG 681 (1178)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1178)
|+|+||++. +..|.++....+.+.+.+......+ . .+..... ..+........ . . .
T Consensus 724 Gty~el~~~-~~~~~~l~~~~~~~~~~~~~~~~~~--~--~~~~~~~-----~~~~~~~~~~~--------~-----~-~ 779 (1381)
T KOG0054|consen 724 GTYEELLKS-GGDFAELAHEEESEQEEEASEKDLE--S--GESSRES-----ESRSLESLSSE--------E-----E-K 779 (1381)
T ss_pred cCHHHHHhc-chhHHHHhhccchhhcccccccccc--c--cccccch-----hhhhhhhhccc--------c-----c-c
Confidence 999999976 6777777332221111100000000 0 0000000 00000000000 0 0 0
Q ss_pred CCCcccCCCCCCCCCCCCCCCCcchhHhhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhh
Q 001041 682 QFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKP--EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKD 759 (1178)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 759 (1178)
... ......+..+.++...+...++.++.|.+. .+...+..+++.+...++.....+|+++|.+........ ...
T Consensus 780 ~~~--~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~-~~~ 856 (1381)
T KOG0054|consen 780 SKD--EKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT-TVS 856 (1381)
T ss_pred ccc--ccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-CCC
Confidence 000 000000000001112233344444444333 222222233444445555556667777776643221100 023
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHH
Q 001041 760 SRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD 839 (1178)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~ 839 (1178)
...+..+|.+++++..++..++.+.+...+.++++.||++|+++++|+||+||| .+|+|+|+|||++|++.+|..+|.
T Consensus 857 ~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFd--tTP~GRILNRFSkD~~~vD~~Lp~ 934 (1381)
T KOG0054|consen 857 TSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFD--TTPTGRILNRFSKDIDTVDVLLPF 934 (1381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcC--CCCccchhhhcccchHHHHHhhHH
Confidence 557889999999999999999999999999999999999999999999999999 599999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH----HHHHHHHHHhchhHHH
Q 001041 840 ALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYE----EASQVANDAVGSIRTV 915 (1178)
Q Consensus 840 ~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~E~l~gi~tI 915 (1178)
.+..++.+++.+++.++++.+..|++. ++++|+.+++ +++++++.+.+|+.++..+ ...+|++|+++|+.||
T Consensus 935 ~~~~~~~~~~~~l~~~~vi~~~~P~fl---i~~~pl~v~~-~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTI 1010 (1381)
T KOG0054|consen 935 TLEFFLQSLLNVLGILVVISYVTPWFL---IAIIPLGVIY-YFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTI 1010 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHHHH---HHHHHHHHHH-HHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCccee
Confidence 999999999999999999999888654 3444554443 4455555666777776544 4578999999999999
Q ss_pred HHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Q 001041 916 ASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS-FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAI 994 (1178)
Q Consensus 916 raf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~ 994 (1178)
|||++|++|.+++.+..|.+.+..+-..... .|.++. .++..+....+..+. .+...+..+.|..-..+.|...+..
T Consensus 1011 RAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~-RWla~Rle~ig~~~v~~~al~~-vl~~~~~~~~g~vGLslsyal~lt~ 1088 (1381)
T KOG0054|consen 1011 RAFGKEERFIQENDELIDENSRAFFLSISAN-RWLAVRLELLGNLVVLIAALFA-VLLPSGLISPGLVGLSLSYALQLTG 1088 (1381)
T ss_pred eeccccHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999988765433322 222222 222222222222222 2222222556777777788888888
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCC
Q 001041 995 GISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGK 1072 (1178)
Q Consensus 995 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge 1072 (1178)
.+..+.....+.++.+.|+||+.++.+.|+|.+...+. +++.+|.+|+|+|+|++.+|.++ .++|||||||+|+|||
T Consensus 1089 ~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~e 1167 (1381)
T KOG0054|consen 1089 LLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGE 1167 (1381)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCc
Confidence 88899999999999999999999999987762221111 34456789999999999999754 3579999999999999
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHH
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei 1152 (1178)
|||||||||||||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|||||+||+||+|+||+. .+++||+||
T Consensus 1168 KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDP--f~e~sD~~I 1245 (1381)
T KOG0054|consen 1168 KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDP--FDEYSDDEI 1245 (1381)
T ss_pred eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCc--ccccCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999954 568999999
Q ss_pred HHHHHHcCchHHHhhcccccccccc
Q 001041 1153 QAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1153 ~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+|+++++++|+++|+|||++|.
T Consensus 1246 W~ALe~~~Lk~~v~~~p~~Ld~~v~ 1270 (1381)
T KOG0054|consen 1246 WEALERCQLKDVVSSLPGGLDSEVS 1270 (1381)
T ss_pred HHHHHHhChHHHHhhCCcCCCceec
Confidence 9999999999999999999999873
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-131 Score=1308.35 Aligned_cols=984 Identities=17% Similarity=0.219 Sum_probs=714.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHH
Q 001041 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA-FIKGWLLT 207 (1178)
Q Consensus 129 ~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 207 (1178)
..+.++...++..+++++++.+...+++ .++|+++|++++|++.+++.+.. +..++...+.++..++++ ..++|. +
T Consensus 367 ~~~~~ir~~L~~~i~~k~L~l~~~~~~~-~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~~-~ 443 (1622)
T PLN03130 367 RVGFRLRSTLVAAVFRKSLRLTHEGRKK-FTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGVA-S 443 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCC-CCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4555566666668889999999988876 48999999999999999998743 333333333333322222 222332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1178)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1178)
++.++++.+++++..++.+..++..++.++..+++.+.+.|.++|+++||+|+||+.+.+++.+.++++.+...+.....
T Consensus 444 l~g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~ 523 (1622)
T PLN03130 444 LIGSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLS 523 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222333444445566777778888888899999999999999999999999999999999999888877766665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001041 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1178)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1178)
++...+..... ..+..+++|.+++..+.++++.+++++.++.....++..++..+..+..+..+.+|+.++++.+++.
T Consensus 524 ~~~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~ 601 (1622)
T PLN03130 524 AFNSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV 601 (1622)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 44333222211 1233455677777788999999998877777777788887778999999999999999999765432
Q ss_pred CcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-CcEEEC
Q 001041 368 DAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLID 446 (1178)
Q Consensus 368 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-G~i~i~ 446 (1178)
.... .+..+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+ |+|.+.
T Consensus 602 ~~~~---~~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~ 678 (1622)
T PLN03130 602 LLPN---PPLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR 678 (1622)
T ss_pred cccC---CcccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc
Confidence 1111 111112346999999999986545679999999999999999999999999999999999999999 999865
Q ss_pred CeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
| +|+||||+||+|++||||||+||.| +++++++++++.|+++++++.||+|++|.+||+|.+||||
T Consensus 679 ~-------------~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGG 744 (1622)
T PLN03130 679 G-------------TVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744 (1622)
T ss_pred C-------------eEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHH
Confidence 4 8999999999999999999999987 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
|||||+||||+|++|+||||||||||||+++++++ .+++++.++++|+|+|||+++.+..||+|++|++|+|+++|+|+
T Consensus 745 QKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~ 824 (1622)
T PLN03130 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYE 824 (1622)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999998866 56788778899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCCCc
Q 001041 606 KLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFAD 685 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (1178)
|++++ ++.|.++...+....+..+.... +. .. + .. ... .... .. ....... . ....
T Consensus 825 eL~~~-~~~~~~l~~~~~~~~~~~~~~~~-~~-~~--~---~~-----~~~-~~~~-~~-----~~~~~~~--~--~~~~ 880 (1622)
T PLN03130 825 ELSNN-GPLFQKLMENAGKMEEYVEENGE-EE-DD--Q---TS-----SKP-VANG-NA-----NNLKKDS--S--SKKK 880 (1622)
T ss_pred HHHhc-chhHHHHHHhccccccccccccc-cc-cc--c---cc-----ccc-cccc-cc-----ccccccc--c--cccc
Confidence 99976 67788777543211110000000 00 00 0 00 000 0000 00 0000000 0 0000
Q ss_pred ccCCCCCCCCCCCCCCCCcchhHhhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH
Q 001041 686 TALGEPAGPSQPTEEVAPEVPTRRLAYLNKP--EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW 763 (1178)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 763 (1178)
...........+++..+...+..+.+|.+. ..+.+++.+++.++..++....++|++.|.+..... ......|
T Consensus 881 -~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~----~~~~~~~ 955 (1622)
T PLN03130 881 -SKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPK----THGPLFY 955 (1622)
T ss_pred -ccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CCchhHH
Confidence 000000000001111122234434433322 222222333333333444445556677666543211 1123456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHH
Q 001041 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALAR 843 (1178)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~ 843 (1178)
+++|++++++..++.+++.+++...+.++.+++|.+++++++++|++||| ++|+|+|+|||++|++.++..++..+..
T Consensus 956 ~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~ 1033 (1622)
T PLN03130 956 NLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNM 1033 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888889999999999999999999999999999999999999 5999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccc
Q 001041 844 IVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY---TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCA 920 (1178)
Q Consensus 844 ~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~ 920 (1178)
++..++.+++.++++++++|...+ +++|+.+++.. ++.+..++..+......+...+++.|+++|++|||+|+.
T Consensus 1034 ~~~~~~~~i~~~i~i~~~~~~~~~---~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~ 1110 (1622)
T PLN03130 1034 FLGQIFQLLSTFVLIGIVSTISLW---AIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKA 1110 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcH
Confidence 999999999999988888874332 23333322222 222222223333334445678899999999999999999
Q ss_pred hHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHH
Q 001041 921 EEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGK---------ATFSDVFKVFFSLTM 991 (1178)
Q Consensus 921 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~---------~t~g~l~~~~~~~~~ 991 (1178)
++++.+++.+..+...+.................+ +..+++++.+...+..+. .++|.+++ +...
T Consensus 1111 ~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~~---~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls---~~~~ 1184 (1622)
T PLN03130 1111 YDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLET---LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLS---YALN 1184 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHH---HHHH
Confidence 99888877777766655433222111111111111 111122222333333321 23344333 4445
Q ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCcccCccccEEEeeeEEeCCCCCCccccccceEEee
Q 001041 992 TAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDE--SGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIR 1069 (1178)
Q Consensus 992 ~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~--~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~ 1069 (1178)
+..++..+.......+..+.+++|+.++++.++|.+...+ .++..++.+|.|+|+||+|+|+++ .++||+||||+|+
T Consensus 1185 ~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~ 1263 (1622)
T PLN03130 1185 ITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEIS 1263 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEc
Confidence 5556666666677889999999999999987766432111 111123457899999999999643 3479999999999
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCH
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE 1149 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asd 1149 (1178)
|||+||||||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||+++. ++||
T Consensus 1264 ~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~--~~td 1341 (1622)
T PLN03130 1264 PSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN--EHND 1341 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC--CCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999984 6899
Q ss_pred HHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1150 AEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1150 eei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|+||+.|+++|||.+||+||||+|+
T Consensus 1342 eei~~Al~~a~l~~~I~~lp~GLdt~Vg 1369 (1622)
T PLN03130 1342 ADLWESLERAHLKDVIRRNSLGLDAEVS 1369 (1622)
T ss_pred HHHHHHHHHcCcHHHHHhCccccCcccc
Confidence 9999999999999999999999999985
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-129 Score=1296.30 Aligned_cols=984 Identities=18% Similarity=0.225 Sum_probs=716.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1178)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (1178)
...+.++...++..+++++++.+...+++. ++|+++|++++|++.+++... .+..++...+.++..+++ +.+.+.
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~---l~~~lg 440 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVL---LYQQLG 440 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHh
Confidence 345566666666788999999999888764 899999999999999999753 333333332222222221 112222
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 208 LVML---SSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1178)
Q Consensus 208 l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1178)
+..+ +++.+++++..++.+..++..++.++..+++.+.++|.++|+++||+|+||+.+.+++.+.++++.+...+..
T Consensus 441 ~~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~ 520 (1495)
T PLN03232 441 VASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQ 520 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 1222233345566777888888888999999999999999999999999999999999999988887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001041 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1178)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1178)
...++...+.... ...+..+++|.+++..+.++++.+++++.++.....++..++..+..+..+..+.+|+.++++.+
T Consensus 521 ~~~~~~~~~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~ 598 (1495)
T PLN03232 521 LLSAFNSFILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSE 598 (1495)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 5555433222111 11223456677777788899999999887777777788888888899999999999999999765
Q ss_pred CCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
++..... ....+..+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|.+|.+.
T Consensus 599 ~~~~~~~---~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~ 675 (1495)
T PLN03232 599 ERILAQN---PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV 675 (1495)
T ss_pred ccccccc---CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE
Confidence 4322111 1111123469999999999864456899999999999999999999999999999999999999998763
Q ss_pred ECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 445 i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
.+|++|+||||+||+|++||||||.||.+ +++++++++++.|+++++++.+|+||+|.|||+|.+||
T Consensus 676 ------------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LS 742 (1495)
T PLN03232 676 ------------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNIS 742 (1495)
T ss_pred ------------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccC
Confidence 24669999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
|||||||+||||+|++|+||||||||||||+++++.+ .++++...+++|+|+||||++.++.||+|++|++|+|++.|+
T Consensus 743 GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt 822 (1495)
T PLN03232 743 GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGT 822 (1495)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999998876 456777778999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCC
Q 001041 604 HSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQF 683 (1178)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (1178)
|+|++++ ++.|.++.+.+....+..+ .. +..+ ..... ....... .. . .. .. ..
T Consensus 823 ~~eL~~~-~~~~~~l~~~~~~~~~~~~-~~--~~~~----~~~~~------~~~~~~~-~~--~-~~-~~--------~~ 875 (1495)
T PLN03232 823 FAELSKS-GSLFKKLMENAGKMDATQE-VN--TNDE----NILKL------GPTVTID-VS--E-RN-LG--------ST 875 (1495)
T ss_pred HHHHHhc-chhHHHHHHhccccccccc-cc--cccc----ccccc------ccccccc-cc--c-cc-cc--------cc
Confidence 9999976 6778887764432111100 00 0000 00000 0000000 00 0 00 00 00
Q ss_pred CcccCCCCCCCCCCCCCCCCcchhHhhhhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhH
Q 001041 684 ADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPE--IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSR 761 (1178)
Q Consensus 684 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 761 (1178)
.. ...........++...+...++.+.+|.+.. ++.+.+.+++.++..+......+|++.|.+.... ......
T Consensus 876 ~~-~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~----~~~~~~ 950 (1495)
T PLN03232 876 KQ-GKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTP----KSYSPG 950 (1495)
T ss_pred cc-cccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC----CCCCcc
Confidence 00 0000000000011111223344444443332 2222222223333333333344555555432110 011234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHH
Q 001041 762 FWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDAL 841 (1178)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l 841 (1178)
.|+.+|++++++..++.+++.+++...+.++++++|++++++++++|++||+ ++++|+|+||+++|++.++..++..+
T Consensus 951 ~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~ 1028 (1495)
T PLN03232 951 FYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLM 1028 (1495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHH
Confidence 6788888888888899999999999999999999999999999999999999 59999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHc
Q 001041 842 ARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT---QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF 918 (1178)
Q Consensus 842 ~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf 918 (1178)
..++..++.++++++++++++|...+ +++|+.+++... ..+..+...+......+...+++.|+++|++|||+|
T Consensus 1029 ~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf 1105 (1495)
T PLN03232 1029 NMFMNQLWQLLSTFALIGTVSTISLW---AIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAY 1105 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcC
Confidence 99999999888888888777754332 223333322222 222223333344445567789999999999999999
Q ss_pred cchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC----CHHHHH-HHHHHHHHH
Q 001041 919 CAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVE-DGKA----TFSDVF-KVFFSLTMT 992 (1178)
Q Consensus 919 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~-~g~~----t~g~l~-~~~~~~~~~ 992 (1178)
++++++.+++.+..+...+......... .+..... ..+..+++++.+...+. .|.+ .++.++ .++.+...+
T Consensus 1106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~wl~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~ 1182 (1495)
T PLN03232 1106 KAYDRMAKINGKSMDNNIRFTLANTSSN-RWLTIRL--ETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNI 1182 (1495)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 9999888888877776665544322211 1111111 11111222222333333 2322 112222 345566667
Q ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeC
Q 001041 993 AIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRA 1070 (1178)
Q Consensus 993 ~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~ 1070 (1178)
..++..+......++.++.+++|+.++++.++|.+..... ++..++.+|+|+|+||+|+|+++ .++||+||||+|+|
T Consensus 1183 ~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~ 1261 (1495)
T PLN03232 1183 TTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSP 1261 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcC
Confidence 7788888888899999999999999999877664321111 11123457899999999999643 34799999999999
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHH
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEA 1150 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asde 1150 (1178)
|||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||++++ ++|||
T Consensus 1262 GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~--~~sde 1339 (1495)
T PLN03232 1262 SEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS--EHNDA 1339 (1495)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC--CCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999974 69999
Q ss_pred HHHHHHHHcCchHHHhhcccccccccc
Q 001041 1151 EIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1151 ei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+|++.|+++|||++||+||||+|+
T Consensus 1340 ei~~al~~a~l~~~I~~lp~GLdt~v~ 1366 (1495)
T PLN03232 1340 DLWEALERAHIKDVIDRNPFGLDAEVS 1366 (1495)
T ss_pred HHHHHHHHcCCHHHHHhCcCCCCceec
Confidence 999999999999999999999999985
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-125 Score=1260.22 Aligned_cols=1020 Identities=17% Similarity=0.196 Sum_probs=743.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhHH
Q 001041 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAF-IKGWL 205 (1178)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 205 (1178)
....+.++...++..+++++++.+...+++. ++|+++|++++|++++.+.... +..++...+.++..+++++ ..+|
T Consensus 382 ~~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~~~-~~~~~~~~~~i~~~~~ll~~~~g~- 458 (1522)
T TIGR00957 382 CFVSGMRIKTAVMGAVYRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLATY-INMIWSAPLQVILALYFLWLNLGP- 458 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhH-
Confidence 4445677777788889999999999988864 8999999999999999886532 3333333333332222222 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
.+++.++++++++++..++.+..++..++.++..+++.+.+.|.++|+++||+|+||+.+.+++.+.+.++.+...+...
T Consensus 459 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~ 538 (1522)
T TIGR00957 459 SVLAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAY 538 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445556666667777888888888899999999999999999999999999999999999999888777665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLIL--EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1178)
...+.......... .+..+.++.+.+. .+.++.+.+++.+.++.....++..+...+..+..+..+..|+.++++.
T Consensus 539 ~~~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 616 (1522)
T TIGR00957 539 LHAVGTFTWVCTPF--LVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616 (1522)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 54443222111111 1112223334443 2457788888776555556678888888899999999999999999976
Q ss_pred CCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
+++.+.............+.|+++|++|+|+.+ ++++|+|+||++++||+++|+||+|||||||+++|+|+++|.+|+|
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 617 EELEPDSIERRTIKPGEGNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred cccccccccccccCCCCCCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 543221100001001112369999999999743 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
.++| +|+||||+||+|++||||||.||.+ .++++++++++.|++.+++..+|+|++|.+|++|.+|
T Consensus 696 ~~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~L 761 (1522)
T TIGR00957 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNL 761 (1522)
T ss_pred EECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCC
Confidence 9998 6999999999999999999999876 5678889999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHH---HHhcCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
||||||||+||||+|++|+|+|||||||+||+++++.+.+.+. +..+++|+|+|||+++.+..||+|++|++|+|++
T Consensus 762 SGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~ 841 (1522)
T TIGR00957 762 SGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISE 841 (1522)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEe
Confidence 9999999999999999999999999999999999999988875 3457899999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHhhcccchhcccc-ccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCC
Q 001041 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDG-QRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLP 679 (1178)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (1178)
.|+++++.++ ++.|.++...+..+.+.+...+. .............................................
T Consensus 842 ~g~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1522)
T TIGR00957 842 MGSYQELLQR-DGAFAEFLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRH 920 (1522)
T ss_pred eCCHHHHHhc-chhHHHHHHhhccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence 9999999876 56777776543221111000000 000000000000000000000000000000000000000000000
Q ss_pred -CCCCCcccCCCCCCCCC--CCC-CCCCcchhHhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Q 001041 680 -SGQFADTALGEPAGPSQ--PTE-EVAPEVPTRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPH 754 (1178)
Q Consensus 680 -~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 754 (1178)
.+............... .++ ...+...+..+++|.+ .++...++.+++.++..++....++|++.|.+.......
T Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~ 1000 (1522)
T TIGR00957 921 HGSSAELQKAEAKEETWKLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGT 1000 (1522)
T ss_pred ccccccccccccccchhhhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 00000000000000000 000 1111222333333322 223333333333344444555666777777764321100
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHH
Q 001041 755 ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVR 834 (1178)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~ 834 (1178)
......|..+|++++++..++.++..++....+.++.+++|++++++++++|++||| ++++|+|+|||++|++.+|
T Consensus 1001 --~~~~~~~~~iy~~l~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id 1076 (1522)
T TIGR00957 1001 --QNNTSLRLSVYGALGILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVD 1076 (1522)
T ss_pred --CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHH
Confidence 111234566788888888888888889999999999999999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHH
Q 001041 835 ALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRT 914 (1178)
Q Consensus 835 ~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~t 914 (1178)
..++..+..++..++.+++.++++++.+|++++++++++++++++..++.+..+...+......+...+++.|+++|++|
T Consensus 1077 ~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~t 1156 (1522)
T TIGR00957 1077 SMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSV 1156 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHH
Confidence 99999999999999999999999998888877666555555544444444444444444555667788999999999999
Q ss_pred HHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHH
Q 001041 915 VASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV-EDGKATFSDVFKVFFSLTMTA 993 (1178)
Q Consensus 915 Iraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~-~~g~~t~g~l~~~~~~~~~~~ 993 (1178)
||+|++|+++.+++.+..+...+..+..............++.. +++++.+...+ ..|.++.|.+..++.+...+.
T Consensus 1157 Iraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~ 1233 (1522)
T TIGR00957 1157 IRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVT 1233 (1522)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998888766544443333333222222 22333444444 357899999999999999999
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC--CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCC
Q 001041 994 IGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES--GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAG 1071 (1178)
Q Consensus 994 ~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~G 1071 (1178)
.++..+......++.++.+++|+.++++.+++.+...+. ++..++.+|+|+|+||+|+|+++ .++||+||||+|+||
T Consensus 1234 ~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~G 1312 (1522)
T TIGR00957 1234 FYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGG 1312 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCC
Confidence 999999999999999999999999999877654211111 11123467899999999999754 246999999999999
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHH
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAE 1151 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdee 1151 (1178)
||||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+|||||||++. +++||||
T Consensus 1313 ekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~--~~~sdee 1390 (1522)
T TIGR00957 1313 EKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF--SQYSDEE 1390 (1522)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc--cCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999853 2699999
Q ss_pred HHHHHHHcCchHHHhhcccccccccc
Q 001041 1152 IQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1152 i~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|++.|+++|||.+||+||||+|+
T Consensus 1391 i~~al~~a~l~~~I~~lp~GLdt~v~ 1416 (1522)
T TIGR00957 1391 VWWALELAHLKTFVSALPDKLDHECA 1416 (1522)
T ss_pred HHHHHHHcCcHHHHhhCccCCCceec
Confidence 99999999999999999999999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-120 Score=1201.81 Aligned_cols=1060 Identities=17% Similarity=0.179 Sum_probs=745.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143 (1178)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 143 (1178)
.+++.++..++....|++++.+++.+... +. .......++..+++..++.+++...+.+.....+.++...+...++
T Consensus 249 ~~~~~l~~~~~~l~~P~ll~~~v~~l~~~-~~--~~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~if 325 (1560)
T PTZ00243 249 QIPFKLLSDVCTLTLPVLLKYFVKFLDAD-NA--TWGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNALIF 325 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555677777764322 11 1111111111222222233333322233333344444455555677
Q ss_pred HHHHhCChhhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 144 KTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1178)
Q Consensus 144 ~~il~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 222 (1178)
+++++.+...+.. ..++|+++|++++|++.+.+++......+...+..+++.+++...++| .+++.++++++++++..
T Consensus 326 ~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~l~~~Pl~li~~~~lL~~~lG~-~al~gv~vl~v~~pl~~ 404 (1560)
T PTZ00243 326 EKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMYLWSSPMVLLLSILLLSRLVGW-CALMAVAVLLVTLPLNG 404 (1560)
T ss_pred HHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 7777777655531 136899999999999999999866554444444444444555555566 56666667777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1178)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1178)
++.+...+.+++..+..+++.+.++|.++|||+||+++||+.+.+++.+.++++.+..++......+...+......+.
T Consensus 405 ~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~l~- 483 (1560)
T PTZ00243 405 AIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPTLM- 483 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888888888899999999999999999999999999999999999999999988887776666655443332222222
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC----cC-C------
Q 001041 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID----AY-D------ 371 (1178)
Q Consensus 303 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~----~~-~------ 371 (1178)
..+.++.+.+..+.++++.+|+.+.++.....++..++..+..+.++.++..|+.+++..++... +. +
T Consensus 484 -~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~~~~ 562 (1560)
T PTZ00243 484 -IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWREQR 562 (1560)
T ss_pred -HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhccccc
Confidence 22234556667788999999998877777778888888889999999999999999997643100 00 0
Q ss_pred ---C--C--------------C---c------------------------ccCCCcccEEEEeEEEECCCC---------
Q 001041 372 ---T--K--------------G---K------------------------ILDDIRGDIELRDVYFSYPAR--------- 396 (1178)
Q Consensus 372 ---~--~--------------~---~------------------------~~~~~~~~i~~~~~~~~y~~~--------- 396 (1178)
. . + + ......+.+.++|++|.|+..
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1560)
T PTZ00243 563 EHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIVEGG 642 (1560)
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccccccccccccccccccccccc
Confidence 0 0 0 0 000011346777877765410
Q ss_pred ----------------------------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe
Q 001041 397 ----------------------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1178)
Q Consensus 397 ----------------------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~ 448 (1178)
.++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~- 721 (1560)
T PTZ00243 643 TGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAER- 721 (1560)
T ss_pred ccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-
Confidence 124589999999999999999999999999999999999999999998753
Q ss_pred ecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 449 ~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
+|+||||+||+|++||+|||.|+.+ .+.+++.++++.|+++++++.+|+|++|.+|++|.+||||||
T Consensus 722 ------------~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQk 788 (1560)
T PTZ00243 722 ------------SIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQK 788 (1560)
T ss_pred ------------eEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHH
Confidence 7999999999999999999999865 456778889999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQ-EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~-~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|||+||||+|++|+|||||||||+||+++.+.+. +++....+++|+|+|||+++.+..||+|++|++|++++.|+++++
T Consensus 789 qRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~~~l 868 (1560)
T PTZ00243 789 ARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSADF 868 (1560)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999877665 455556678999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCCCCCCCcccccccCCCCCCCCccc
Q 001041 608 VEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLPSGQFADTA 687 (1178)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (1178)
.+. +.|..+........+..+.....+... .+.. .. . ........ .. +. ...........
T Consensus 869 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~--~--~~~~~~~~-~~--------~~--~~~~~~~~~~~ 928 (1560)
T PTZ00243 869 MRT--SLYATLAAELKENKDSKEGDADAEVAE--VDAA-PG--G--AVDHEPPV-AK--------QE--GNAEGGDGAAL 928 (1560)
T ss_pred HhC--hHHHHHHHhhccccccccccccccccc--cccc-cc--c--cccccccc-cc--------cc--ccccccccccc
Confidence 874 456666543211111000000000000 0000 00 0 00000000 00 00 00000000000
Q ss_pred CCCCCCCCCCCCCCCCcchhHhhhhhcCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHH
Q 001041 688 LGEPAGPSQPTEEVAPEVPTRRLAYLNKPE--IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWAL 765 (1178)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 765 (1178)
..........+++..+...++.+..|.+.. +...+..+++.++..++.....+|++.|.+.... .....|+.
T Consensus 929 ~~~~~~l~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~~~------~~~~~~l~ 1002 (1560)
T PTZ00243 929 DAAAGRLMTREEKASGSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRSFK------LSAATYLY 1002 (1560)
T ss_pred ccccchhhhHHHHhcCcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC------CCcccHHH
Confidence 000000000001111223343333333221 1111111122222223333344455554432111 11234566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHH
Q 001041 766 IYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIV 845 (1178)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~ 845 (1178)
+|+++.++..++.+++.+.....+.+..+++|.+++++++++|++||| ++++|+|+|||++|++.++..++..+..++
T Consensus 1003 ~y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~~~~ 1080 (1560)
T PTZ00243 1003 VYLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYLL 1080 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 666666666666666777777778888899999999999999999999 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchH
Q 001041 846 QNISTAAAGLIIAFTASWQLALIILVMLPLIGVS---GYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE 922 (1178)
Q Consensus 846 ~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~ 922 (1178)
..++.+++.++++++.+|.+.++ ++|+.+++ ..++.+..+...+......+.+.+++.|+++|+++||+|++++
T Consensus 1081 ~~~~~~i~~li~~~~~~p~~~~~---~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~ 1157 (1560)
T PTZ00243 1081 QCLFSICSSILVTSASQPFVLVA---LVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAH 1157 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHH
Confidence 99999999999999888854433 33333332 2223333333333334455667899999999999999999999
Q ss_pred HHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 001041 923 KVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGAR--LVEDGKATFSDVFKVFFSLTMTAIGISQSS 1000 (1178)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~ 1000 (1178)
++.++|.+..+.+.+..+..............++..+..+++.+++.. +...+.+++|.+..++.+...+..++..+.
T Consensus 1158 ~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~ 1237 (1560)
T PTZ00243 1158 LVMQEALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLV 1237 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888777665554444444444444443333333333 333455788988888888889999999999
Q ss_pred hchhhHHHHHHHHHHHHHHhcCCCCCC-CC-------------------------CCCCC---cccCccccEEEeeeEEe
Q 001041 1001 SFSSDSNKAKSAAASIFAIIDRESKID-PS-------------------------DESGT---ILEDVKGEIELHHVSFK 1051 (1178)
Q Consensus 1001 ~~~~~~~~~~~s~~ri~~~l~~~~~~~-~~-------------------------~~~~~---~~~~~~g~I~f~nVsf~ 1051 (1178)
.....++.++.+++|+.++++.+++.+ +. +..++ +.++..|.|+|+||+|+
T Consensus 1238 ~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~ 1317 (1560)
T PTZ00243 1238 RQVATVEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMR 1317 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEE
Confidence 999999999999999999996433211 00 00000 11224689999999999
Q ss_pred CCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1052 Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
|+++ .++||+||||+|+||||||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||
T Consensus 1318 Y~~~-~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF 1396 (1560)
T PTZ00243 1318 YREG-LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLF 1396 (1560)
T ss_pred eCCC-CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccc
Confidence 9753 346999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1132 NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1132 ~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|||||||+++ +++||+|||+||++|+++|||.+||+||||+|+
T Consensus 1397 ~gTIreNIdp~--~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vg 1440 (1560)
T PTZ00243 1397 DGTVRQNVDPF--LEASSAEVWAALELVGLRERVASESEGIDSRVL 1440 (1560)
T ss_pred cccHHHHhCcc--cCCCHHHHHHHHHHCCChHHHhhCccccccccc
Confidence 99999999875 379999999999999999999999999999985
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-117 Score=1175.37 Aligned_cols=1011 Identities=17% Similarity=0.202 Sum_probs=705.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 001041 130 TGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLV 209 (1178)
Q Consensus 130 ~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 209 (1178)
.+.++-..+...+++++++.+...+++ .++|+++|++++|++++.+.+......+...+..+++.+++...++| .+++
T Consensus 149 ~~~~~r~~L~~~iy~K~L~l~~~~~~~-~~~g~i~nl~s~Dv~~i~~~~~~~~~~~~~pi~i~~~~~lL~~~~G~-~~l~ 226 (1490)
T TIGR01271 149 LGMQMRIALFSLIYKKTLKLSSRVLDK-ISTGQLVSLLSNNLNKFDEGLALAHFVWIAPLQVILLMGLIWELLEV-NGFC 226 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhcC-CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 344444444445589999999888886 48999999999999999998766544444334344444444455555 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 210 MLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGI 289 (1178)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (1178)
.++++++++++..++.+.+.+.+++.++..+++.+.++|.++||++||+|+||+.+.+++.+.+.++.+...+......+
T Consensus 227 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~ 306 (1490)
T TIGR01271 227 GLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYF 306 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888888999999999999999999999999999999999999999999999999999888877766655433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001041 290 GLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLG-EASPCLSAFGAGQAAAFKMFETINRKPEID 368 (1178)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 368 (1178)
......... ..+..+.++.+.+. +..+.+.+|+++.++.....++. .++..+..+..+.++..|+.+++..++...
T Consensus 307 ~~~~~~~~~--~~~~~~~f~~y~~~-~~~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~ 383 (1490)
T TIGR01271 307 YSSAFFFSG--FFVVFLSVVPYALI-KGIILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKT 383 (1490)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 332222111 12223334444443 33577777777655555545553 455667888899999999999997644311
Q ss_pred cCCCCCcccCCCcccEEEEeEEEECCCCC-------------------------------CCccccceeEEEeCCCEEEE
Q 001041 369 AYDTKGKILDDIRGDIELRDVYFSYPARP-------------------------------NEQIFSGFSISISSGTTAAL 417 (1178)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~-------------------------------~~~~l~~i~l~i~~g~~~~i 417 (1178)
.. . ......++++|++|.|+... .+++|+|+||+|++||+++|
T Consensus 384 -~~---~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I 457 (1490)
T TIGR01271 384 -LE---Y--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAV 457 (1490)
T ss_pred -cc---c--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEE
Confidence 11 0 01123589999999995310 13689999999999999999
Q ss_pred EcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHH
Q 001041 418 VGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATE 497 (1178)
Q Consensus 418 vG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~ 497 (1178)
+||+|||||||+++|+|+++|.+|+|.++| +|+||+|+||+|++||+|||.||.+ ++++++.++++
T Consensus 458 ~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~ 523 (1490)
T TIGR01271 458 AGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIK 523 (1490)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHH
Confidence 999999999999999999999999999998 6999999999999999999999865 56677888899
Q ss_pred HhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHH-HHHHHhcCCeEEE
Q 001041 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE-ALDRIMVNRTTVI 576 (1178)
Q Consensus 498 ~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~-~i~~~~~~~t~i~ 576 (1178)
.|++.+++..+|+|++|.+|++|.+|||||||||+||||+|++|+|||||||||+||+++++.+.+ ++.++.+++|+|+
T Consensus 524 ~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvil 603 (1490)
T TIGR01271 524 ACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603 (1490)
T ss_pred HHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999999999999999999999999999999999999999999998886 5777778999999
Q ss_pred EecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhhccc----c------h-------h-cc-----c
Q 001041 577 VAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKE----S------E-------Q-TI-----D 633 (1178)
Q Consensus 577 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~----~------~-------~-~~-----~ 633 (1178)
|||+++.+..||+|++|++|++++.|+++++.+. ++.|.......+...+ . + + .. +
T Consensus 604 vtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (1490)
T TIGR01271 604 VTSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGP 682 (1490)
T ss_pred EeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999875 4556555421100000 0 0 0 00 0
Q ss_pred ccccc---chhhh--hhhc-c-------------------------cccccccccc-------cCCCCCC-CCCCccc--
Q 001041 634 GQRKS---EISME--SLRH-S-------------------------SHRMSLRRSI-------SRGSSIG-NSSRHSI-- 672 (1178)
Q Consensus 634 ~~~~~---~~~~~--~~~~-~-------------------------~~~~~~~~~~-------~~~~~~~-~~~~~~~-- 672 (1178)
+.... .+..+ ..+. . .......+.. ...+..+ ...+...
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (1490)
T TIGR01271 683 ETIKQSFKQPPPEFAEKRKQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYH 762 (1490)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccc
Confidence 00000 00000 0000 0 0000000000 0000000 0000000
Q ss_pred ---cc--ccCC-----CCCC--------------------CC------ccc---CC-CCC------CC---CC-----CC
Q 001041 673 ---SV--SFGL-----PSGQ--------------------FA------DTA---LG-EPA------GP---SQ-----PT 698 (1178)
Q Consensus 673 ---~~--~~~~-----~~~~--------------------~~------~~~---~~-~~~------~~---~~-----~~ 698 (1178)
+. .... ..+. .+ ..+ .. ... +. .. .+
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (1490)
T TIGR01271 763 HGLQHQAQRRQSVLQLMTHSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFAD 842 (1490)
T ss_pred cccccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhH
Confidence 00 0000 0000 00 000 00 000 00 00 00
Q ss_pred -CC-CCCcchhHhhhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--c---CCCch-h---------hhh
Q 001041 699 -EE-VAPEVPTRRLAYLNKP--EIPVILAGTIAAMANGVILPIYGLLISSVIETF--F---KPPHE-L---------KKD 759 (1178)
Q Consensus 699 -~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~-~---------~~~ 759 (1178)
++ ..+...++.+++|.+. .+..+++.+++.++..++..+..+|+..|.... + ..... . ...
T Consensus 843 ~e~~~~g~v~~~vY~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1490)
T TIGR01271 843 ERENVFETTTWNTYLRYITTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPT 922 (1490)
T ss_pred HHHhhcCcccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCc
Confidence 00 0112233333333322 122222222333333344444455555443210 0 00000 0 001
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHH
Q 001041 760 SRFW-ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVG 838 (1178)
Q Consensus 760 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~ 838 (1178)
..+| +.+|++++++..++.+++.+++...+.++++++|.+++++++++|++||+ ++++|+++|||++|++.+++.++
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnRfs~Di~~id~~l~ 1000 (1490)
T TIGR01271 923 SAYYIFYIYVGTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLN--TMKAGRILNRFTKDMAIIDDMLP 1000 (1490)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHH
Confidence 1122 34444555555667778888899999999999999999999999999999 59999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHc
Q 001041 839 DALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASF 918 (1178)
Q Consensus 839 ~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf 918 (1178)
..+..++..++.+++.++++++++|++++++++++.+++++..++.+..+...+......+...+++.|+++|+.|||+|
T Consensus 1001 ~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf 1080 (1490)
T TIGR01271 1001 LTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAF 1080 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHh
Confidence 99999999999999999999999998765443333333322233333333333344445566789999999999999999
Q ss_pred cchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q 001041 919 CAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY--AASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGI 996 (1178)
Q Consensus 919 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l 996 (1178)
++++++.++|.+..+...+..+..............++..+.. ++.++++.. .++.|.+..++.+...+..++
T Consensus 1081 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l 1155 (1490)
T TIGR01271 1081 GRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTL 1155 (1490)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHH
Confidence 9999999999999987665544332222222111111111111 112222222 233444444455666667777
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC----------------CCcccCccccEEEeeeEEeCCCCCCccc
Q 001041 997 SQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDES----------------GTILEDVKGEIELHHVSFKYPSRPDVQV 1060 (1178)
Q Consensus 997 ~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~----------------~~~~~~~~g~I~f~nVsf~Y~~~~~~~v 1060 (1178)
..+......++..+.+++|+.++++.+++.....+. .++.+|..|.|+|+||+|+|+++ .++|
T Consensus 1156 ~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~v 1234 (1490)
T TIGR01271 1156 QWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAV 1234 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-Ccce
Confidence 888888888999999999999999876653211100 01123456899999999999753 4579
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHh
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1178)
|+||||+|+||||||||||||||||||+++|+|+|+ ++|+|+|||+||+++++++||++|++|||||+||+||||+||+
T Consensus 1235 L~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLd 1313 (1490)
T TIGR01271 1235 LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLD 1313 (1490)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhC
Confidence 999999999999999999999999999999999998 7999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1141 YGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1141 ~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+. .+++|+|+|+|++.++++++|.++|+||||+|+
T Consensus 1314 p~--~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~ 1348 (1490)
T TIGR01271 1314 PY--EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348 (1490)
T ss_pred cc--cCCCHHHHHHHHHHCCCHHHHHhCccccccccc
Confidence 75 368999999999999999999999999999985
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-100 Score=884.38 Aligned_cols=576 Identities=39% Similarity=0.644 Sum_probs=530.5
Q ss_pred chHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1178)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1178)
..+++++.|+++. +..+..+.++.++......+.|++.|+++|.+...... .......++.+..+.++.+++.+++
T Consensus 133 ~~~~rl~~l~~~~-~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~---~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 133 TLLKRLLGLLKPE-WKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS---ADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred hHHHHHHHHhchh-HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899988765 44445555555566666777888999999987651111 2333344556667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1178)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1178)
.+++.+.+.++..++|.++|+++++++++|||. +.+|++++|++.|++.+.+.++..+...+..+...++.+.++++++
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~-nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDE-NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc-CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 999999999999999999999999999999998 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
|.++++.++.+|+++++..++++++++..++.|+..++.++...|.+++|||||+|+.|+.+.++|.+..++..+...+.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1178)
....++......+...+..+.++++|++++..+.++.|.+.++++|......++..+...+..+.++..|++|+||+++.
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 88888888888888888888999999999999999999999999888888888889999999999999999999999999
Q ss_pred CCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
+|..+... . ..+...+|.|+|+||+|+||.+++.++|+|+||+|+|||.||+|||||+||||++++|+++|+|++|+|
T Consensus 448 ~P~i~~~G-~-~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 448 KPRIPLTG-T-LAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCCC-c-cccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 99876542 1 122257899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
.+||+|+++++++++|++||+|.|||.||++||+|||.||.++.++|+++.++++++.++||..+|+||+|.|||+|.+|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
||||||||||||||++||.||||||+|||||+++|..+++++.+..+++|||+|+||++++++||+|+|+++|+++|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHhhcc
Q 001041 604 HSKLVEDPEGAYSQLIRLQEANK 626 (1178)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~~~~ 626 (1178)
|+||++.+++.|+++++.|....
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~~~ 708 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLDSG 708 (716)
T ss_pred HHHHhhCcccHHHHHHHHhcccC
Confidence 99999998899999998775433
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-96 Score=892.36 Aligned_cols=579 Identities=46% Similarity=0.781 Sum_probs=542.4
Q ss_pred ccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1178)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1178)
.+.++++++++.++ +|+.++++++++++.++..|++.+.+++.+..+...+. +........|+++++++|+...++.+
T Consensus 648 ~~~s~~~i~k~~~p-e~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~-~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKP-EWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDD-DELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccHHHHHHhccc-hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46779999998766 78899999999999999999999999999998764322 22222333478888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
++++++.+.++++..|+|..+|++++++++.|||....+|.+.+|+++|...++..+.+.+..+++.+..++..+++.|+
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~ 805 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997655699999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 001041 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1178)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1178)
++|.+++++++..|++++..+...+.+.....+..+..++..+...|++.+||||++|+.|+++.+.|.+...+..+...
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~ 885 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSF 885 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETI 361 (1178)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 361 (1178)
+..++.++..++.+.+.++.+++.+|+|.+++..+.+++..++.++.........+++.....+.+..+..|+.++++.+
T Consensus 886 ~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~ 965 (1228)
T KOG0055|consen 886 KRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEIL 965 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888777778888888889999999999999999999
Q ss_pred ccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 362 NRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
+++|++++.++.+...++.+|.|+++||+|+||.||+.++|+|+||+|++||.+||||||||||||++.+|.|+|+|.+|
T Consensus 966 dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G 1045 (1228)
T KOG0055|consen 966 DRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG 1045 (1228)
T ss_pred cCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 99987766543333445678999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCC
Q 001041 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGT 521 (1178)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~ 521 (1178)
.|.|||.|++++++++||++||.|+|+|.||++||||||+||.+..+++++.+|++.+++|+||.+||+||||.|||+|.
T Consensus 1046 ~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1046 KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred eEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 99999999999999999999999999999999999999999966689999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 001041 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1178)
+||||||||||||||++|||+||||||+|||||.++|+.+|+++++...+||+|+|+||++++++||.|.|+++|+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCchHHHHHHHHh
Q 001041 602 GTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 602 g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
|+|++|++. +|.|.+|++.|.
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhcc
Confidence 999999995 899999987653
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-85 Score=795.88 Aligned_cols=550 Identities=32% Similarity=0.517 Sum_probs=499.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 61 MIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRG 140 (1178)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 140 (1178)
+++..++..+.+++.|+ +...++|......+. +.+....+.++..++..+++.+++.+...+++.|....+-.
T Consensus 159 v~~~sl~l~i~~l~~p~---~~q~viD~Vl~~~~~----~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~ 231 (709)
T COG2274 159 VLLASLLLQLLALATPL---FSQIVIDKVLPDASR----STLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSG 231 (709)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHhhhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444444455555555 556678877654332 33445566677778888899999999999999999999999
Q ss_pred HHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 001041 141 LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMS 220 (1178)
Q Consensus 141 ~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 220 (1178)
.+++|++++|++||+++ ++|++++|++ |.+.|.+++.......+.++.+++..++++++++|.++++.++.+|++++.
T Consensus 232 ~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~ 309 (709)
T COG2274 232 RFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLI 309 (709)
T ss_pred HHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999975 9999999996 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 221 GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFC 300 (1178)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1178)
..++.+..++..++..+..++..+.+.|++.|+++||+.+.|.++..+|++...+..+...+.............++...
T Consensus 310 ~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 389 (709)
T COG2274 310 TLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQL 389 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888888888777777777788888
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCC
Q 001041 301 SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDI 380 (1178)
Q Consensus 301 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 380 (1178)
+.++.+|+|+.++..+.+|.|.++++.+..-....++..+......+.....+.+|+.+.++.++|.+.... ....+..
T Consensus 390 ~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-~~~~~~~ 468 (709)
T COG2274 390 SSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-LIHLPKL 468 (709)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-ccccccc
Confidence 888999999999999999999998877666666778888899999999999999999999999887443221 2344567
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
+|+|+++||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|.+||.|+++++++++|+
T Consensus 469 ~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 469 QGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred CceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 8999999999999765 357999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|+||+||+.+|+|||||||+++.|+.++|+++++|+.++++++|+++|.||+|.+||+|.+|||||||||+||||++++
T Consensus 548 ~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~ 627 (709)
T COG2274 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSK 627 (709)
T ss_pred heeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1178)
|+||||||||||||+++|+.|.+.+.+..++||+|+||||++++++||+|+|||+|+|+|+|+|+||++. ++.|.++++
T Consensus 628 P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~ 706 (709)
T COG2274 628 PKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQ 706 (709)
T ss_pred CCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 899999886
Q ss_pred HH
Q 001041 621 LQ 622 (1178)
Q Consensus 621 ~~ 622 (1178)
.|
T Consensus 707 ~q 708 (709)
T COG2274 707 QQ 708 (709)
T ss_pred cc
Confidence 44
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-84 Score=815.02 Aligned_cols=571 Identities=22% Similarity=0.330 Sum_probs=485.3
Q ss_pred cccccchHHHHhHhhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHH
Q 001041 39 EKTESVPFYKLFTFADS-ADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSG 117 (1178)
Q Consensus 39 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (1178)
++.+.+++..|..|.+. ..+...++.+++.++..++.....+|+.+|.+.-...... . .....+.+.|.+++++.+
T Consensus 796 ~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~--~-~~~~~~~~vY~~l~~~~~ 872 (1381)
T KOG0054|consen 796 RETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTT--T-VSTSFYLGVYALLGVASS 872 (1381)
T ss_pred HhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--C-CCcchHHHHHHHHHHHHH
Confidence 35567777777777765 3444444455666666677777778887777653221110 0 012235566778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 118 IASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFL 197 (1178)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~ 197 (1178)
++.+++.+.+.+.+.++++.+|..++++++|.||+|||+ ||+|+|+||||+|++.+|+.++..+..+++.++.+++.++
T Consensus 873 ~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdt-TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~ 951 (1381)
T KOG0054|consen 873 LLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDT-TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV 951 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCC-CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997 6999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHH
Q 001041 198 IAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAY 277 (1178)
Q Consensus 198 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~ 277 (1178)
++.+..|+..++++++..+++.+..++.+..+...+.....+++..+|++|+++|+.|||+|+.|++|.+++....+...
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 99999998888877777778878888888888887777888999999999999999999999999999999988877765
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 278 KS---GVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354 (1178)
Q Consensus 278 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 354 (1178)
+. .....+|.++++.+...+..+..++...+. ..+..++|.+--.+.+.++....+++.......+...+.++
T Consensus 1032 ~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~----~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SV 1107 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL----PSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSV 1107 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 54 344566667766655433333322222211 12224566666666777888888889999999999999999
Q ss_pred HHHHHHhccCCCCCcCC---CCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 001041 355 FKMFETINRKPEIDAYD---TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1178)
Q Consensus 355 ~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~ 431 (1178)
+|+.|+.+.++| ++.+ ..+++.||.+|+|+|+|++.+|... .++|||||||+|+|||+|||||++|||||||+++
T Consensus 1108 ERv~eY~~~~~E-~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~a 1185 (1381)
T KOG0054|consen 1108 ERVLEYTDIPSE-APLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILA 1185 (1381)
T ss_pred hHHHHHhcCCCC-CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHH
Confidence 999999987666 2221 1135568889999999999999643 5789999999999999999999999999999999
Q ss_pred HhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 001041 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1178)
Q Consensus 432 l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 511 (1178)
|+|+.+|.+|+|.|||+|++++++++||++++++||||.||+||+|.||+ +..+++|+++|+|++.|++.+.++++|+|
T Consensus 1186 LFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLD-Pf~e~sD~~IW~ALe~~~Lk~~v~~~p~~ 1264 (1381)
T KOG0054|consen 1186 LFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLD-PFDEYSDDEIWEALERCQLKDVVSSLPGG 1264 (1381)
T ss_pred HHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccC-cccccCHHHHHHHHHHhChHHHHhhCCcC
Confidence 99999999999999999999999999999999999999999999999999 56789999999999999999999999999
Q ss_pred ccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEE
Q 001041 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 512 ~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
+|+.|.|+|.|||-||||.+||||||+++++||+|||+||++|++|+..||++|++.+++||||.|+||++++.+||||+
T Consensus 1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVl 1344 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVL 1344 (1381)
T ss_pred CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001041 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 592 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1178)
|||+|+|+|+|+|++|++++++.|+.+..
T Consensus 1345 Vld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1345 VLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred EeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999998888875554
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-80 Score=769.45 Aligned_cols=567 Identities=22% Similarity=0.297 Sum_probs=461.8
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.+++|.++.++ .+++++++.++..++....|++++.++|........ ......+...++++.++..++.+++.+
T Consensus 10 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (588)
T PRK11174 10 TRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP---REALLPPFILLILLFVLRALLAWLRER 85 (588)
T ss_pred hHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666665443 344566666666777777888888988865321111 011222233344445566677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
...+.+.+...++|..+++++++.|.++|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.
T Consensus 86 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 164 (588)
T PRK11174 86 VGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWA 164 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999874 99999999999999999999888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK11174 165 AGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLR 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888899999999999999999999999999999999888877766655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQV---------VNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFK 356 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r 356 (1178)
..+....+..++..+..++.+++++... .+.++.|.+ +..+.+......++..+......+..+..+.+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~r 323 (588)
T PRK11174 245 MAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAES 323 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443333333333333323323333322 255555532 111122223345677777778888999999999
Q ss_pred HHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 357 MFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+.++++.+++.+... ....+....+.|+++||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|++
T Consensus 324 i~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 324 LVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 999997754322111 11111112356999999987763 357999999999999999999999999999999999999
Q ss_pred CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh
Q 001041 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516 (1178)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~ 516 (1178)
|++|+|.+||+|+++++.+++|++|+||||+|++|++||||||.+|.|++++++++++|+.|+++++++.+|+|+||.+
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCC
Q 001041 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1178)
Q Consensus 517 ~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1178)
||+|.+|||||||||+||||++++|+||||||||||||+++++.+++.+++..+++|+|+||||++++..||+|++|++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEEEecChhHHhcCCCchHHHHHHHHh
Q 001041 597 KIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
+|+|.|+|+||+++ ++.|++++..|+
T Consensus 560 ~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 560 QIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred eEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 99999999999987 678999887554
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-80 Score=776.08 Aligned_cols=565 Identities=36% Similarity=0.558 Sum_probs=485.0
Q ss_pred cchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1178)
...++++++++++. +..+++.+++.++..++....|++.+.++|......+.. ......+.++++.++..++.++
T Consensus 146 ~~~~~~l~~~~~~~-~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l 220 (711)
T TIGR00958 146 ADLLFRLLGLSGRD-WPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPP----ALASAIFFMCLLSIASSVSAGL 220 (711)
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777776543 334455566666666777777888999998765332211 1222223344455556677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
+.++..+...++..++|..++++++++|+.+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 221 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~ 299 (711)
T TIGR00958 221 RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWL 299 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999974 99999999999999999999998899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
+|.+++++++.+|+.+++...+.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 300 s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 379 (711)
T TIGR00958 300 SPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888999998888888889999999999999999999999999999999999998887777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
.....+.......++..+..++.+++|.+++..+.++.|.+++++.+......++..+......+..+..+.+|++++++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 459 (711)
T TIGR00958 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLD 459 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65555544444444555555666778888899999999999888888877788888888899999999999999999998
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.+++.+... ...+.+..+.|+++||+|+||+++++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|+
T Consensus 460 ~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 460 RKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred CCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 766533211 112223456799999999998765578999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.+||+|+++++.+++|++|+||||+|++|++||||||.+|.++.++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 538 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred EEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
|||||||||+||||++++|+|||||||||+||+++++.+++ ....+++|+|+||||++++..||+|++|++|+|+|.|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999998 3335789999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHH
Q 001041 603 THSKLVEDPEGAYSQL 618 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~ 618 (1178)
+|+||+++ ++.|+++
T Consensus 696 t~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 696 THKQLMED-QGCYKHL 710 (711)
T ss_pred CHHHHHhC-CCchHhc
Confidence 99999987 5677765
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-80 Score=812.52 Aligned_cols=570 Identities=29% Similarity=0.467 Sum_probs=477.2
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
+..++++..+..+ .++++++++++.+++.|+++++++.+++.+..... .......+++++++++++.+++.+++.+
T Consensus 813 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~l~~~~~~i~~~~~~~l~~~ 888 (1466)
T PTZ00265 813 LRIVYREIFSYKK-DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN---LEANSNKYSLYILVIAIAMFISETLKNY 888 (1466)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554433322 35667778888889999999999999986643211 1122334556666777888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1178)
+..+.+.++..++|..++++++++|++||++ .+++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 889 ~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~ 968 (1466)
T PTZ00265 889 YNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCP 968 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999985 347999999999999999999998899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHH
Q 001041 205 LLTLVMLSSIPLLAMSGGVMAIMISKMS-SR-----------------GQGAYAKAASVVEQTIGSIRTVASFTGEKQAM 266 (1178)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~ 266 (1178)
.++++++++++++ ...+.+..+... ++ .++..++....+.|.+.|+++||+|+.|+.+.
T Consensus 969 ~l~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 1045 (1466)
T PTZ00265 969 IVAAVLTGTYFIF---MRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFC 1045 (1466)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHH
Confidence 8877665433333 333333222111 11 12335566889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1178)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 346 (1178)
++|.+......+...+.....++..++..++..+..++.+|+|+.++..+.++.+.++.++.+++....++..+......
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~ 1125 (1466)
T PTZ00265 1046 NLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998887777777777777777777777777788899999999999999999887665544444455667777888
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcCCCCCcc---cCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 001041 347 FGAGQAAAFKMFETINRKPEIDAYDTKGKI---LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1178)
Q Consensus 347 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1178)
+..+..+++|+++.++.+++.+..+..... +++..|.|+|+||+|+||++++.++|+|+||+|+||+++||||||||
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGs 1205 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCC
Confidence 999999999999999876543221111111 12345789999999999876666899999999999999999999999
Q ss_pred cHHHHHHHHhccCCC------------------------------------------------------CCCcEEECCee
Q 001041 424 GKSTVISLIERFYDP------------------------------------------------------QAGEVLIDGIN 449 (1178)
Q Consensus 424 GKStl~~~l~g~~~~------------------------------------------------------~~G~i~i~g~~ 449 (1178)
|||||+++|+|+|+| ++|+|++||+|
T Consensus 1206 GKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~d 1285 (1466)
T PTZ00265 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVD 1285 (1466)
T ss_pred CHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEE
Confidence 999999999999998 59999999999
Q ss_pred cCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 450 LKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 450 ~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
+++++.+++|++|+||||+|+||+|||||||.+|.|+++++++++||+.++++++|.+||+|+||.|||+|.+|||||||
T Consensus 1286 i~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQ 1365 (1466)
T PTZ00265 1286 ICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQ 1365 (1466)
T ss_pred HHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeC----CEEE-Eec
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHR----GKIV-EKG 602 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~----G~i~-~~g 602 (1178)
||||||||+++|+||||||||||||+++++.|+++|.+.. +++|+|+||||+++++.||+|+||++ |+++ |+|
T Consensus 1366 RIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1366 RIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEec
Confidence 9999999999999999999999999999999999999874 68999999999999999999999999 9955 899
Q ss_pred ChhHHhcCCCchHHHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~~ 622 (1178)
+|+||++..++.|+++++.+
T Consensus 1446 th~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1446 THEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred CHHHHHhcCCChHHHHHhhc
Confidence 99999985478999998754
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-79 Score=751.32 Aligned_cols=551 Identities=34% Similarity=0.591 Sum_probs=478.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIR 139 (1178)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr 139 (1178)
.+.++.++.++........+++++.+++.... .. .....+...++++.++..++.++..+...+.+.+...++|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~lr 88 (567)
T COG1132 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALLA--DL----GELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLR 88 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666777788888887651 11 1222233334444456667777777777777799999999
Q ss_pred HHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 001041 140 GLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAM 219 (1178)
Q Consensus 140 ~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 219 (1178)
..+++++++.|+.+|++ +++|++++|+++|++.++..+......+...+..+++.+++++..+|.+++++++..|++.+
T Consensus 89 ~~~~~~l~~~~~~~~~~-~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 167 (567)
T COG1132 89 RDLFEKLLRLPLSFFDK-AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLAL 167 (567)
T ss_pred HHHHHHHHhCCHHHhCc-CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 99999999999999997 48999999999999999999988755555567888888999999999999999998999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 220 SGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299 (1178)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1178)
...++.++.++..+..++..++..+.+.|.++|+++||+|+.++...+++.+..++..+...+.....+........+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (567)
T COG1132 168 VLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888877788888888899999999999999999999999999998888888877777766666666665556666667
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCC
Q 001041 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDD 379 (1178)
Q Consensus 300 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 379 (1178)
+...+.+++|...+..+.++.|.+..++.+......++..+......+..+..+++|+++.++.+++....+. ....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~---~~~~ 324 (567)
T COG1132 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPD---PLKD 324 (567)
T ss_pred HHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCC---CCCC
Confidence 7777778888888888889999988887777777778888888889999999999999999998665332221 1233
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHh
Q 001041 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 380 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
..+.|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++..++|
T Consensus 325 ~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr 402 (567)
T COG1132 325 TIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLR 402 (567)
T ss_pred CCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHH
Confidence 4577999999999974 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
++|+||||||++|++||+|||.+|.|++++++++++|+.++++|+++++|+|+||.+||+|.+||||||||||||||+++
T Consensus 403 ~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 403 KRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+|+|||||||||+||+++|+.+++.+.+..++||+++||||++++++||+|+|||+|+|+|.|+|+||+++ ++.|++++
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~ 561 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLY 561 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHH
Confidence 99999999999999999999999999988889999999999999999999999999999999999999998 89999999
Q ss_pred HHHh
Q 001041 620 RLQE 623 (1178)
Q Consensus 620 ~~~~ 623 (1178)
+.+.
T Consensus 562 ~~~~ 565 (567)
T COG1132 562 QAQG 565 (567)
T ss_pred HHhh
Confidence 7653
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-80 Score=717.78 Aligned_cols=466 Identities=33% Similarity=0.518 Sum_probs=436.8
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
.+++++.+.+++++++..++++.++......+.|++.+.++|........ .........++.++.++.+++.+++.+++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~-~~~~~~~~~~l~~l~~~~a~~~~~r~~~~ 212 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS-ADALKRACTILLGLFLIGALANAIRGGLL 212 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999999999999999998999999999999988651111 11222345556677788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
..++.++..++|..+|+++++++++||| ++.+|+|++|++.|+..+.+.++..+...+.++++.++++++|+++||+|
T Consensus 213 ~~a~~rv~~rlR~~lF~sil~QdiaFFD--~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 213 QYAGERVVARLRTDLFRSLLRQDIAFFD--ENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhc--cCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 9999999999999999999999999999 58899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
+++.++.+|+++++..++.+++++.+++.|++.++++....|.+.+++|||+|+.|+++.+||.+..++..+...|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
.+.+.....+..++....++++|++++..|.+|.|++.+|++|......++..+..+..++.++..+.+|++|++|.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
.++. +...+....|.|+|+||+|+||.||+.+||||+||+|+|||+||+||||||||||+++||+|||||++|+|++|
T Consensus 451 i~~~--G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllD 528 (716)
T KOG0058|consen 451 IPLT--GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLD 528 (716)
T ss_pred CCCC--CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEEC
Confidence 7654 22222257899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+||++++.++||++||+|.|||+||+|||+|||+||.. ++|||||++|||+||+||||+++|+||||.|+
T Consensus 529 G~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG 599 (716)
T KOG0058|consen 529 GVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVG 599 (716)
T ss_pred CeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 999999999999999999999999999999999999965 89999999999999999999999999999986
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-78 Score=758.83 Aligned_cols=563 Identities=27% Similarity=0.359 Sum_probs=477.0
Q ss_pred chHHHHhHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTF-ADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 44 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1178)
..+++++++ .++.+ ..+...++++++..+.....|++++.++|.+...... ......++.++++.++..++.++
T Consensus 121 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~ 195 (686)
T TIGR03797 121 LGLRDLLRFALRGAR-RDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR----SLLVQIALALLAAAVGAAAFQLA 195 (686)
T ss_pred ccHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666665 23222 2223333344444444445556777888876533211 22233344444555666778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
+.+.....+.++..++|..+++++++.|+.+|++. ++|++++|++ |++.+++.+...+...+..+..+++.+++++++
T Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (686)
T TIGR03797 196 QSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYY 273 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999875 9999999997 899999998887777777777777788888999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
+|.+++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+...+..+...+
T Consensus 274 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 353 (686)
T TIGR03797 274 SWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELS 353 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888899999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
......+...+..++..+..++.+++|++++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++
T Consensus 354 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 433 (686)
T TIGR03797 354 AQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILE 433 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77666665555556666666777888999999999999999888777777777888888889999999999999999987
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.++|.+... ..+.+..+.|+++||+|+|++. ++++|+|+||+|+|||+++|||+||||||||+++|+|+|+|++|+
T Consensus 434 ~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 434 ALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred CCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 765432111 1122235679999999999743 367999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.+||+|+++++.+++|++|+||||||++|+|||||||.++.| .++++++++++.++++++++.+|+|+||.+||+|.+
T Consensus 510 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~ 588 (686)
T TIGR03797 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588 (686)
T ss_pred EEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 9999999999999999999999999999999999999999988 899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
|||||||||+||||++++|+|||||||||+||+++++.+.+.+++. ++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999886 68999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|+||+++ ++.|++++..
T Consensus 667 ~~~~Ll~~-~~~y~~l~~~ 684 (686)
T TIGR03797 667 TYDELMAR-EGLFAQLARR 684 (686)
T ss_pred CHHHHHhC-CcHHHHHHHh
Confidence 99999986 6889988763
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-78 Score=806.99 Aligned_cols=569 Identities=21% Similarity=0.288 Sum_probs=456.5
Q ss_pred ccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 42 ESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1178)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1178)
+.+++..|..|.+...+...++.+++.++..++..+.++|++.|.+......... ....+...|++++++..++.+
T Consensus 948 g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~----~~~~~~~iy~~l~i~~~~~~~ 1023 (1522)
T TIGR00957 948 GQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQN----NTSLRLSVYGALGILQGFAVF 1023 (1522)
T ss_pred CcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC----CcchHHHHHHHHHHHHHHHHH
Confidence 3444555555554433333333333333444444555667777665321110110 011223356667777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
+..++..+.+.+++.++|..++++++++|++||++ +++|+++||+++|++.+++.++..+..++..++.+++.++++++
T Consensus 1024 ~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~ 1102 (1522)
T TIGR00957 1024 GYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFER-TPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILL 1102 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhcc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87788888899999999999999999999999997 59999999999999999999999999999999888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 001041 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1178)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1178)
.+|++++++++++++++++..++.+..++..+......++..+++.|+++|+++||+|++|+.+.+++.+..+...+...
T Consensus 1103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~ 1182 (1522)
T TIGR00957 1103 ATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYY 1182 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 88877666666666666666666666666666667778889999999999999999999999999999888877766654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL-EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFET 360 (1178)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~ 360 (1178)
.......+......++..+ +.++.+...+. .+.++.|.+..++.+.+....++..+...+..+..++.+++|+.++
T Consensus 1183 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~ 1259 (1522)
T TIGR00957 1183 PSIVANRWLAVRLECVGNC---IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEY 1259 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333332222121111111 11222222232 4568888887777777777788888888999999999999999999
Q ss_pred hccCCCCCcC--CCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 361 INRKPEIDAY--DTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 361 ~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
++.++|.+.. ....++.++.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++|+|+++|
T Consensus 1260 ~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~ 1338 (1522)
T TIGR00957 1260 SETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES 1338 (1522)
T ss_pred hcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC
Confidence 9776553211 11112224567899999999999754 24799999999999999999999999999999999999999
Q ss_pred CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 001041 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1178)
Q Consensus 439 ~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~ 518 (1178)
++|+|.|||+|+++++++++|++|+||||||.+|+|||||||+.. .++++++++++++.|++++++.++|+|+||.+||
T Consensus 1339 ~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~-~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e 1417 (1522)
T TIGR00957 1339 AEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHECAE 1417 (1522)
T ss_pred CCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcc-cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecC
Confidence 999999999999999999999999999999999999999999943 3689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||+|+|||+|+|
T Consensus 1418 ~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1418 GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhHHhcCCCchHHHHHHH
Q 001041 599 VEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|.|+|+||+++ ++.|+++++.
T Consensus 1498 vE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1498 AEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred EEECCHHHHHhC-CCHHHHHHHH
Confidence 999999999987 6899998863
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-77 Score=754.81 Aligned_cols=565 Identities=28% Similarity=0.408 Sum_probs=476.5
Q ss_pred chHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1178)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1178)
.++..++.+.++.++. ++..++++++..++....|++++.++|.+...... +........++++.++..++.+++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 216 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM----GTLGIISIGLIIAYIIQQILSYIQ 216 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666665543332 23333444444445555666888888876543211 122223333344455566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1178)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1178)
.++..+.+.++..++|..+++++++.|+.+|++. ++|++++|++ |++.+.+.+.......+..+..++..++++++++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (708)
T TIGR01193 217 IFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQN 294 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888889999999999999999999999999874 9999999998 8999999888777777777777777778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||++|+|+.+.+++.+...+..+...+.
T Consensus 295 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 374 (708)
T TIGR01193 295 MLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKY 374 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999999999988999999999999999999999999999999999998888777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1178)
....+....+..++..+..++.+++|+.++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 375 QKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 66555554444555555666778889999999999999998887777777778888888899999999999999999887
Q ss_pred CCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
++|.+.... ....++..+.|+++||+|+|++ ++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++|+|
T Consensus 455 ~~e~~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 455 DSEFINKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred CCccccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 655322111 1112334578999999999973 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
++||+|+++++.+++|++|+||||+|++|+|||||||.++ .++.++++++++++.+++++++..+|+|+||.+||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9999999999999999999999999999999999999998 577899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
|||||||||+||||++++|+|||||||||+||+++++.+.+.+++. +++|+|+||||++++..||+|++|++|+++|.|
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1178)
+|+||++. ++.|+++++
T Consensus 691 ~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 691 SHDELLDR-NGFYASLIH 707 (708)
T ss_pred CHHHHHhc-CCcHHHHhh
Confidence 99999987 678888763
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-77 Score=756.07 Aligned_cols=563 Identities=25% Similarity=0.344 Sum_probs=473.8
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.++++.++.+. .+...++++++..+.....|++.+.++|........ .........++++.++..++.+++.+
T Consensus 142 ~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~ 216 (710)
T TIGR03796 142 LRALWRRLRGSRG-ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ----DWLRPLLLGMGLTALLQGVLTWLQLY 216 (710)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445444443322 122222333333333344455777778865433211 11222333344445566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
.....+.++..++|..+++++++.|+++|++. ++|++++|+++| +.+.+.+...+...+..+..+++.++++++++|.
T Consensus 217 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 294 (710)
T TIGR03796 217 YLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPV 294 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999875 999999999988 6899998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+...+..++.++..++..+.+.|.++|+++||++++|+.+.++|.+...+..+...+...
T Consensus 295 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 374 (710)
T TIGR03796 295 LTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGV 374 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888889999999999999999999999999999999888887777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
...+...+..++..+..++.+++|++++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.++
T Consensus 375 ~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 454 (710)
T TIGR03796 375 LTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPV 454 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66665555556666666777888999999999999999888777777777888888889999999999999999998765
Q ss_pred CCCcCC----CCCccc-CCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001041 366 EIDAYD----TKGKIL-DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1178)
Q Consensus 366 ~~~~~~----~~~~~~-~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~ 440 (1178)
+.+... ...... +...+.|+++||+|+|++. ++++|+|+||+|+|||+++||||||||||||+++|+|+|+|++
T Consensus 455 e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 455 DPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred ccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 532211 000111 2335689999999999853 3579999999999999999999999999999999999999999
Q ss_pred CcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC
Q 001041 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1178)
Q Consensus 441 G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g 520 (1178)
|+|.+||+|+++++.+++|++|+||||+|++|+|||||||.++.|+.++++++++++.+++++++.++|+|++|.+||+|
T Consensus 534 G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G 613 (710)
T TIGR03796 534 GEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGG 613 (710)
T ss_pred cEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCC
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
.+|||||||||+||||++++|+|||||||||+||+++++.+.+.+++ .++|+|+||||++++..||+|++|++|+|++
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~ 691 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQ 691 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999987 5899999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001041 601 KGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~ 619 (1178)
.|+|+||++. ++.|++++
T Consensus 692 ~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 692 RGTHEELWAV-GGAYARLI 709 (710)
T ss_pred ecCHHHHHHc-CCcHHHHh
Confidence 9999999987 67788765
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-77 Score=676.10 Aligned_cols=549 Identities=27% Similarity=0.412 Sum_probs=462.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 67 GAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTI 146 (1178)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~i 146 (1178)
++.+.++......+++...++.+..... ...+..+...++++.++..++.+.+.......+.++...+|..+++++
T Consensus 8 l~~l~~i~~i~qa~llA~~l~~l~~~~~----~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~l 83 (559)
T COG4988 8 LAVLSGIAIIAQAALLADILTKLIEGQL----FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKL 83 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445555555555443211 122333444455556667778888777777788888899999999999
Q ss_pred HhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 147 LRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAI 226 (1178)
Q Consensus 147 l~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~ 226 (1178)
.+.++.+-+. +++|+..+.+..-++.++..+...++..+.+.+..+..++.+++++|..++++++.+|++.++...+++
T Consensus 84 ~~~gp~~~~~-~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilvg~ 162 (559)
T COG4988 84 AKLGPAFIAQ-KPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILVGL 162 (559)
T ss_pred HhCChhhhcC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998876 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 001041 227 MISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALS- 305 (1178)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 305 (1178)
..++..++....+....+++.+.++|+.|+|.|+..+...+++.+...+.++..++......+...+.-++.....++.
T Consensus 163 ~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAlvA 242 (559)
T COG4988 163 AAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIALVA 242 (559)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888888887776666665555555555544444
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEE
Q 001041 306 VWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIE 385 (1178)
Q Consensus 306 ~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 385 (1178)
++.|-.++..|.++....+.++...--...++..+...++.-..+..++++++.+++.+++...........+..+.+++
T Consensus 243 v~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ei~ 322 (559)
T COG4988 243 VYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEIS 322 (559)
T ss_pred HHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCceee
Confidence 33344443325666655544444444445688888888888888888888888888776553322211112222234466
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
.+|++|+||+. +++++|+||+++||++++|||+||||||||+++|+|+++|++|+|.+||++..+++.+.+|++++||
T Consensus 323 ~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 323 LENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred ecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 67999999854 3899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 001041 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1178)
Q Consensus 466 ~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1178)
||+|++|.||+||||.+++++.++++++++++.+++.+++.. |+|+||.+||+|.+|||||+||++||||++++++++|
T Consensus 401 ~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~l 479 (559)
T COG4988 401 SQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLL 479 (559)
T ss_pred CCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEE
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhh
Q 001041 546 LDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1178)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1178)
||||||+||.++|+.|.+.|.++.+++|+|+||||++.+.+||+|+|||+|+++|.|+|++|.++ ++.|++|+..|+.
T Consensus 480 lDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~~ 557 (559)
T COG4988 480 LDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQEG 557 (559)
T ss_pred ecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999987 7899999986653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-77 Score=795.63 Aligned_cols=571 Identities=19% Similarity=0.263 Sum_probs=429.6
Q ss_pred cccchHHHHhHhhchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001041 41 TESVPFYKLFTFADSADT-ALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119 (1178)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (1178)
.+.+++..|.+|.+.... .++++.+++.++..++....++|++.|.+....... ....+...|++++++..++
T Consensus 896 ~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~------~~~~~~~i~~~l~~~~~i~ 969 (1622)
T PLN03130 896 TGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTH------GPLFYNLIYALLSFGQVLV 969 (1622)
T ss_pred cCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC------chhHHHHHHHHHHHHHHHH
Confidence 345566666666544221 122222233333334444455666666654221111 1122344566677777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA 199 (1178)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1178)
.+++.++..+.+.+++.++|.+++++++++|++||++ +++|+|+||+++|++.+++.++..+..++..+..+++.++++
T Consensus 970 ~~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~-~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i 1048 (1622)
T PLN03130 970 TLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHT-NPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLI 1048 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhcc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999999999999999997 599999999999999999999998888888888888887777
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHH
Q 001041 200 FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKS 279 (1178)
Q Consensus 200 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 279 (1178)
+++.|...+++++++.+++.+..++.+..++..+......++..+++.|+++|+++||+|++++.+.+.+.+..+...+.
T Consensus 1049 ~~~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~ 1128 (1622)
T PLN03130 1049 GIVSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRF 1128 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence 77776433332222222222333344444444455556677889999999999999999999998887777666655444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 280 GVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEG-YN-----GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1178)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1178)
.........+......++.. ++.++.+...+..+. .. .+.+..++.+.+.....+..+......+.....+
T Consensus 1129 ~~~~~~~~~wl~~~l~~~~~---~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~s 1205 (1622)
T PLN03130 1129 TLVNMSSNRWLAIRLETLGG---LMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNA 1205 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222111111111111111 111111112222221 10 1222222223333444555556666777889999
Q ss_pred HHHHHHHhccCCCCCcCCC--CCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 001041 354 AFKMFETINRKPEIDAYDT--KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1178)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~ 431 (1178)
.+|+.++++.++|.+.... ..++.++.+|.|+|+||+|+|+++ .+++|+|+||+|+|||++|||||||||||||+++
T Consensus 1206 veRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~l 1284 (1622)
T PLN03130 1206 VERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNA 1284 (1622)
T ss_pred HHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 9999999987665432111 112234556889999999999643 3579999999999999999999999999999999
Q ss_pred HhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 001041 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1178)
Q Consensus 432 l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 511 (1178)
|+|+++|++|+|.|||+|+++++++++|++|++|||||.+|+|||||||+++. .+++++++++++.+++++++.++|+|
T Consensus 1285 L~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~G 1363 (1622)
T PLN03130 1285 LFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLG 1363 (1622)
T ss_pred HhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999876 57999999999999999999999999
Q ss_pred ccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEE
Q 001041 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 512 ~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
+||.+||+|.+||||||||||||||++++|+|||||||||+||++|++.|++.|++.+++||+|+||||++++.+||+|+
T Consensus 1364 Ldt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIl 1443 (1622)
T PLN03130 1364 LDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 1443 (1622)
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhcCCCchHHHHHHHHh
Q 001041 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 592 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
||++|+|+|.|+|++|++++++.|+++++...
T Consensus 1444 VLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1444 VLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999999876789999987543
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-76 Score=726.73 Aligned_cols=566 Identities=22% Similarity=0.322 Sum_probs=466.0
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSE-TVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1178)
+++++++.++.++ .+++++++.++..++....++++++++|.......... ..... .....+++++++..++.+++.
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 81 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYM-LPAAGVRGAAIGRTAGRYGER 81 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH-hHHHHHHHHHHHHHHHHHHHH
Confidence 3345555544332 33344555555555555566677888875431111000 00111 112233345566777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001041 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1178)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1178)
++....+.+...++|.++++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (574)
T PRK11160 82 LVSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDL 160 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999999999999999999999974 9999999999999999999998888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 205 LLTLVMLSSIPLLAMS-GGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 205 ~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
.+++++++.+|+++++ ..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.
T Consensus 161 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (574)
T PRK11160 161 TLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQ 240 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999887777766543 455667777777788888899999999999999999999999999999999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLT-GSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
....+....+..++..+..++.+++|..+ ..+.++.|.+++++.+... ...++..+......+..+..+.+|+.++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~ 319 (574)
T PRK11160 241 ANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITE 319 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666665555556666667778776 4677888887665544322 223455556667788889999999999998
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.+++.+.... ....+..+.|+++||+|+|++. ++++|+|+||+++|||+++||||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 320 QKPEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred CCCCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 7655322111 1112234679999999999753 347999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++++.++++++++. |+|+||.+||+|.+
T Consensus 397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~ 475 (574)
T PRK11160 397 ILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQ 475 (574)
T ss_pred EEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCC
Confidence 99999999999999999999999999999999999999999988999999999999999999999 99999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
||||||||++||||++++|+|||||||||+||+++++.+.+.+.+..+++|+|+||||++++..||+|++|++|+++|.|
T Consensus 476 LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQG 555 (574)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1178)
+|+||+++ ++.|+++++
T Consensus 556 ~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 556 THQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred CHHHHHhc-CcHHHHHHh
Confidence 99999987 788998875
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-76 Score=746.72 Aligned_cols=555 Identities=25% Similarity=0.378 Sum_probs=470.4
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.++.+.++.+. .+...++++++..++....|++++.++|......+. .......+.++++.++..++.+++.+
T Consensus 135 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~ 209 (694)
T TIGR03375 135 KHWFWSTLKESWP-LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF----ETLWVLAIGVALAIVFDFVLKTLRSY 209 (694)
T ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433222 222333344444444555566777888875533221 11222233333445556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
+..+.+.++..++|..+++++++.|+.+ ++ .++|++++|+ +|++.+++.+...+...+..+..++..++++++++|.
T Consensus 210 ~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~-~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (694)
T TIGR03375 210 FLDVAGKKADLILSAKLFERVLGLRMEA-RP-ASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGP 286 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccc-CC-CChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 8888999999999999999999999998 55 4899999999 7999999998877777777777777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
++++.++.+|+++++..++.+..++..++..+..++..+.+.|.++|+++||.|++|+.+.++|.+...+..+...+...
T Consensus 287 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 366 (694)
T TIGR03375 287 LVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRF 366 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888999999998888899999999999999999999999999999999999999888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
.......+..++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+.....+.+|+.++++.++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~ 446 (694)
T TIGR03375 367 LSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPV 446 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77666656666666666677888999999999999999888777777777888888888999999999999999998766
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+... .....++..+.|+++||+|+|++. ++++|+|+||+|+|||+++|||+||||||||+++|+|+|+|++|+|.+
T Consensus 447 e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~i 524 (694)
T TIGR03375 447 ERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLL 524 (694)
T ss_pred CCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 532211 111122335679999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||+|+++++.+++|++|+||||+|++|+|||+|||.++.|++++++++++++.++++++++.+|+|++|.+||+|.+|||
T Consensus 525 dg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSg 604 (694)
T TIGR03375 525 DGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSG 604 (694)
T ss_pred CCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||||+||||++++|+|+|||||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 605 GQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~ 684 (694)
T TIGR03375 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKD 684 (694)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcC
Q 001041 606 KLVED 610 (1178)
Q Consensus 606 ~l~~~ 610 (1178)
||++.
T Consensus 685 eLl~~ 689 (694)
T TIGR03375 685 QVLEA 689 (694)
T ss_pred HHHHH
Confidence 99864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-76 Score=730.76 Aligned_cols=563 Identities=31% Similarity=0.524 Sum_probs=473.2
Q ss_pred HhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1178)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1178)
++++.++..+. +++.+++.++..++....++++..+++........ .......+.+++++++..++.++..++..
T Consensus 16 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 90 (582)
T PRK11176 16 LWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR----SVLKWMPLVVIGLMILRGITSFISSYCIS 90 (582)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433332 23333444444445555566777777754432111 11112222233455566677777777778
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1178)
Q Consensus 129 ~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 208 (1178)
+.+.+....+|..+++++++.|..+|++. ++|++++|+++|++.+.+.+...+..++..+..+++.++++++++|.+++
T Consensus 91 ~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 169 (582)
T PRK11176 91 WVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999875 99999999999999999999888888888888889888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAG 288 (1178)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1178)
++++.+|+.+++..++.+..++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+......
T Consensus 170 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T PRK11176 170 ILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888889999999999999999999999999999999998888877777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001041 289 IGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID 368 (1178)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 368 (1178)
+......++..+..++.+++|+..+..+.++.|.++.++.+......++..+......+..+..+.+|+.+.++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 329 (582)
T PRK11176 250 ISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 55555555555555666777888888899999998877777777777888888888899999999999999887654422
Q ss_pred cCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe
Q 001041 369 AYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1178)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~ 448 (1178)
... ...++..+.|+++||+|+|++. ++++|+|+||+|++||+++|||+||||||||+++|+|+++|++|+|.+||+
T Consensus 330 ~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 330 EGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 111 1122234579999999999753 367999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 449 ~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
|+++++.+++|++|+||||+|++|++||||||.++.++ +++++++++++.++++++++++|+|+||.+|++|.+|||||
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGq 485 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQ 485 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHH
Confidence 99999999999999999999999999999999998764 79999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||||+||||++++|+|||||||||+||+++++.+.+.+.+..+++|+|+||||++.++.||+|++|++|+|+|.|+|+++
T Consensus 486 rQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l 565 (582)
T PRK11176 486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAEL 565 (582)
T ss_pred HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHH
Q 001041 608 VEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 608 ~~~~~~~~~~~~~~~ 622 (1178)
++. ++.|++++..+
T Consensus 566 ~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 566 LAQ-NGVYAQLHKMQ 579 (582)
T ss_pred HhC-CChHHHHHHHH
Confidence 987 67899988644
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-75 Score=723.81 Aligned_cols=564 Identities=25% Similarity=0.354 Sum_probs=461.4
Q ss_pred HHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 48 KLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCW 127 (1178)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (1178)
.++.|..+.++ .+++.+++.++..++....|++++.++|......... . .....+++.++++.++..++.++..+..
T Consensus 13 ~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (592)
T PRK10790 13 RLLAYGSPWRK-PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP-L-GLVAGLAAAYVGLQLLAAGLHYAQSLLF 89 (592)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333 2334555556666666777778888888754322111 1 1111122233344455666777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1178)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (1178)
...+.+...++|..+++++++.|.++|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.++
T Consensus 90 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 168 (592)
T PRK10790 90 NRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMA 168 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999975 9999999999999999999998888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1178)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1178)
+++++.+|+.+++..+..+..++..++.++..++..+.+.|.+.|+++||.|+.|+.+.+++.+...+..+...+.....
T Consensus 169 li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (592)
T PRK10790 169 LVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLD 248 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777777777777777777788888999999999999999999999999999988777666655544443
Q ss_pred HHH-HHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 288 GIG-LGMVMLIVFC-SYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 288 ~~~-~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
++. ..+..++... ..+++++.| . +..+.++.|.++.++.+......++..+......+..+..+++|+.++++.++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 249 GFLLRPLLSLFSALILCGLLMLFG-F-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 332 1112122211 222223333 3 46788999988887777767777888888889999999999999999987654
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+... . ...+...+.|+++|++|+|++ ++++|+|+||++++||+++|||+||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~-~---~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 400 (592)
T PRK10790 327 QQYG-N---DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRL 400 (592)
T ss_pred ccCC-C---CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEE
Confidence 3211 1 111223467999999999974 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||+|+++++.+++|++|+||||+|++|++||||||.++. +.++++++++++.++++++++.+|+|+||.+|++|.+|||
T Consensus 401 dg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSG 479 (592)
T PRK10790 401 DGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSV 479 (592)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCH
Confidence 999999999999999999999999999999999999997 5899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 480 GqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~ 559 (592)
T PRK10790 480 GQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQ 559 (592)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHhhc
Q 001041 606 KLVEDPEGAYSQLIRLQEAN 625 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~~~~ 625 (1178)
||++. ++.|+++++.+...
T Consensus 560 ~L~~~-~~~y~~l~~~~~~~ 578 (592)
T PRK10790 560 QLLAA-QGRYWQMYQLQLAG 578 (592)
T ss_pred HHHhC-CCHHHHHHHHHhhh
Confidence 99987 68999998766433
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-76 Score=781.26 Aligned_cols=511 Identities=20% Similarity=0.279 Sum_probs=411.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 109 FVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQL 188 (1178)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~ 188 (1178)
|++++++..++.++..+.....+.+.+.++|..+++++++.|+.|||+ +++|+++||+++|++.+++.++..+..++..
T Consensus 1004 y~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~-~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~ 1082 (1560)
T PTZ00243 1004 YLGIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDT-TPLGRILNRFSRDIDILDNTLPMSYLYLLQC 1082 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccC-CCccHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555667788899999999999999999997 5999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHH
Q 001041 189 MATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSN 268 (1178)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 268 (1178)
++.+++.++++++.+|.+++++++++.+++.+..++.+..++..+......++..+++.|++.|+++||+|++++.+.++
T Consensus 1083 ~~~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~ 1162 (1560)
T PTZ00243 1083 LFSICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQE 1162 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHH
Confidence 88888888888888875444433333333444445555556666666677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 269 YKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGG--KLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSA 346 (1178)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 346 (1178)
+.+..+...+..........+......++..+..++..+++. .+...+..+.+.+..++.+......++..+...+..
T Consensus 1163 ~~~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~ 1242 (1560)
T PTZ00243 1163 ALRRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVAT 1242 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988887776655543333322222222222222112222222 122233456666655555556666778888888889
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcC--------------------------CCCCc---ccCCCcccEEEEeEEEECCCCC
Q 001041 347 FGAGQAAAFKMFETINRKPEIDAY--------------------------DTKGK---ILDDIRGDIELRDVYFSYPARP 397 (1178)
Q Consensus 347 ~~~~~~~~~r~~~~~~~~~~~~~~--------------------------~~~~~---~~~~~~~~i~~~~~~~~y~~~~ 397 (1178)
+..++.+.+|+.++++..++.+.. ....+ +.++..|.|+|+||+|+|++.
T Consensus 1243 le~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~- 1321 (1560)
T PTZ00243 1243 VEADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG- 1321 (1560)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-
Confidence 999999999999998643321100 00000 112235789999999999753
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHH
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1178)
.+++|+|+||+|+|||++||||+||||||||+++|+|+++|++|+|.|||+|+++++++++|++|+||||||.||+||||
T Consensus 1322 ~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIr 1401 (1560)
T PTZ00243 1322 LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVR 1401 (1560)
T ss_pred CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHH
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC-CCEEEEeCCCCCCCHH
Q 001041 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD-PRILLLDEATSALDAE 556 (1178)
Q Consensus 478 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~-~~illlDe~ts~lD~~ 556 (1178)
|||+.+ .++++++++++++.+++++++..+|+|+||.+||+|.|||||||||||||||++++ |+|||||||||+||++
T Consensus 1402 eNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~ 1480 (1560)
T PTZ00243 1402 QNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPA 1480 (1560)
T ss_pred HHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHH
Confidence 999964 46899999999999999999999999999999999999999999999999999996 8999999999999999
Q ss_pred hHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHH
Q 001041 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 557 ~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1178)
+++.|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1481 te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1481 LDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999987688999998754
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-76 Score=785.73 Aligned_cols=570 Identities=19% Similarity=0.260 Sum_probs=428.0
Q ss_pred cccchHHHHhHhhchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 001041 41 TESVPFYKLFTFADSAD-TALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119 (1178)
Q Consensus 41 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 119 (1178)
.+.+++..|.+|.+... +.++++.+++.++..+......+|+..|.+..... . .....+...|++++++..++
T Consensus 893 ~g~v~~~vy~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~--~----~~~~~~l~~y~~l~~~~~~~ 966 (1495)
T PLN03232 893 TGIISWNVLMRYNKAVGGLWVVMILLVCYLTTEVLRVSSSTWLSIWTDQSTPK--S----YSPGFYIVVYALLGFGQVAV 966 (1495)
T ss_pred cCcccHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--C----CCcchHHHHHHHHHHHHHHH
Confidence 34556666666665432 22222222333333333334445555554421100 0 00123445566777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA 199 (1178)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (1178)
.+++.++..+.+.+++.++|.+++++++++|++||++ +++|+++||+++|++.+++.++..+..++..++.+++.++++
T Consensus 967 ~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~-~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~ 1045 (1495)
T PLN03232 967 TFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHT-NPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALI 1045 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCc-CCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999999999999999999999997 599999999999999999999998888888888777777776
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHH
Q 001041 200 FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKS 279 (1178)
Q Consensus 200 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 279 (1178)
+.+.+...++++++..++++...++.+..++..+......++..+++.|+++|+++||+|++++.+.+++.+..+...+.
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~ 1125 (1495)
T PLN03232 1046 GTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRF 1125 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHH
Confidence 66665333222222222222222333334445555566778889999999999999999999998888777766655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC----C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 280 GVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE-EGY----N-GGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1178)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~----~-~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1178)
.........+.......+ ..++.++.+...+.. +.. . .+.+..++.+......++.++...+..+..+..+
T Consensus 1126 ~~~~~~~~~wl~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 1202 (1495)
T PLN03232 1126 TLANTSSNRWLTIRLETL---GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNS 1202 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222211111111111 111111112222221 211 1 1111112233333444666777788889999999
Q ss_pred HHHHHHHhccCCCCCcCCCC--CcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 001041 354 AFKMFETINRKPEIDAYDTK--GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431 (1178)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~ 431 (1178)
.+|+.++++.++|.+..... .++.++.+|.|+|+||+|+|+.+ .+++|+|+||+|+|||++|||||||||||||+++
T Consensus 1203 ~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~l 1281 (1495)
T PLN03232 1203 VERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNA 1281 (1495)
T ss_pred HHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 99999999876653321111 12224556889999999999643 3579999999999999999999999999999999
Q ss_pred HhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCC
Q 001041 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQG 511 (1178)
Q Consensus 432 l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g 511 (1178)
|+|+++|++|+|.|||+|+++++++++|++|+||||||.+|+|||||||+++. ++++++++++++.++++++++++|+|
T Consensus 1282 L~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~G 1360 (1495)
T PLN03232 1282 LFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFG 1360 (1495)
T ss_pred HhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCC
Confidence 99999999999999999999999999999999999999999999999999875 68999999999999999999999999
Q ss_pred ccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEE
Q 001041 512 IDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 512 ~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
+||.+||+|.+||||||||+|||||++++|+|||||||||+||++|++.|++.|++.++++|+|+||||++++.+||+|+
T Consensus 1361 Ldt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIl 1440 (1495)
T PLN03232 1361 LDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKIL 1440 (1495)
T ss_pred CCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEecChhHHhcCCCchHHHHHHHH
Q 001041 592 VIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 592 ~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1178)
||++|+|+|.|+|+||++++++.|+++++.+
T Consensus 1441 VL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1441 VLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 9999999999999999998667999998754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-75 Score=718.74 Aligned_cols=562 Identities=33% Similarity=0.529 Sum_probs=487.3
Q ss_pred HhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1178)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1178)
++++.++. +..+++++++.++.+++.+..+++++.+++........ .........++++.++..++.++..+...
T Consensus 5 l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (571)
T TIGR02203 5 LWSYVRPY-KAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDR----SVLWWVPLVVIGLAVLRGICSFVSTYLLS 79 (571)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444332 33455666677777777888888888888754432211 12222233444556667778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1178)
Q Consensus 129 ~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 208 (1178)
+.+.++..++|..+++++++.|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++
T Consensus 80 ~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~ 158 (571)
T TIGR02203 80 WVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTL 158 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 89999999999999999999999999874 89999999999999999999988999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 209 VMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAG 288 (1178)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (1178)
++++.+|+++++..++.+..++..++..+..++..+.+.|.++|+++||.++.++.+.+++.+..++..+...+.....+
T Consensus 159 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 159 IVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999998888888899999999999999999999999999999999999988888877777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC
Q 001041 289 IGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEID 368 (1178)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 368 (1178)
....+..++..+..++.+++|+.++..+.++.|.++++..++.....++..+......+..++.+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 66555556666666777788888888999999999888877777788888888889999999999999999997755432
Q ss_pred cCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe
Q 001041 369 AYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI 448 (1178)
Q Consensus 369 ~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~ 448 (1178)
... ....+..+.|+++||+|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 319 ~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 211 1112234579999999999754 357999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 449 NLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 449 ~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
++++++.+++|++++||||+|++|+||+||||.++.+ +.++++++++++.+++++++.++|+|+||.+|++|.+|||||
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 9999999999999999999999999999999999986 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|+++
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHH
Q 001041 608 VEDPEGAYSQLIRL 621 (1178)
Q Consensus 608 ~~~~~~~~~~~~~~ 621 (1178)
++. ++.|++++..
T Consensus 555 ~~~-~~~~~~~~~~ 567 (571)
T TIGR02203 555 LAR-NGLYAQLHNM 567 (571)
T ss_pred HHc-CCHHHHHHHH
Confidence 987 5778877653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-74 Score=728.73 Aligned_cols=567 Identities=28% Similarity=0.408 Sum_probs=478.2
Q ss_pred hHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1178)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1178)
.+..++++.++.+. .+...++++++..+.....|++++.++|......+. .......+.++++.++..++.+++.
T Consensus 126 ~~~~~~~~~~~~~~-~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~----~~l~~l~~~~~~~~~~~~~~~~l~~ 200 (694)
T TIGR01846 126 GFSWFIPAIIRYRK-QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL----STLSVLALAMLAVAIFEPALGGLRT 200 (694)
T ss_pred cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544433222 222233333333344445556777888876532211 1222333444455556677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001041 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1178)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1178)
+.....+.+...++|..+++++++.|+.+|++. ++|++++|+ +|++.+++.+...+...+..+.+++..++++++++|
T Consensus 201 ~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 278 (694)
T TIGR01846 201 YLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSP 278 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999975 999999999 699999999887777777666666666788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1178)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1178)
.+++++++.+|+++++..++.+..++..++..+..++..+.+.|.++|+++||++|.|+.+.++|.+...+..+...+..
T Consensus 279 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 358 (694)
T TIGR01846 279 TLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVT 358 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988899988888888888888888888888899999999999999999999999999999999888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001041 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1178)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1178)
...+.......++..+..++.+++|.+++..+.++.|.++++..+......++..+......+..+..+.+|+.++++.+
T Consensus 359 ~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 438 (694)
T TIGR01846 359 NLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSP 438 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 76666655556666666777788999999999999999988777777777788888888999999999999999999776
Q ss_pred CCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 365 PEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
++.... .....+...+.|+++||+|+|++. ++++|+|+||+|+|||+++|||+||||||||+++|+|+++|++|+|.
T Consensus 439 ~e~~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~ 515 (694)
T TIGR01846 439 TEPRSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515 (694)
T ss_pred CCccCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 543221 111122335679999999999743 35799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 445 i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
+||+|+++++.+++|++|+||||+|++|++||+|||.++.|+.++++++++|+.+++++++..+|+|+||.+|++|.+||
T Consensus 516 idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LS 595 (694)
T TIGR01846 516 VDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLS 595 (694)
T ss_pred ECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCC
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
||||||++||||++++|+|||||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 596 gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~ 675 (694)
T TIGR01846 596 GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRH 675 (694)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHH
Q 001041 605 SKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1178)
++++++ ++.|+++++.+
T Consensus 676 ~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 676 EELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHc-CChHHHHHHhh
Confidence 999987 68899988643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-75 Score=647.56 Aligned_cols=551 Identities=27% Similarity=0.395 Sum_probs=441.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 65 SIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLK 144 (1178)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 144 (1178)
+++.+.+.+..-..|..+...++..................+..|.+..++..++..++...+.+..++.....-++++.
T Consensus 36 l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~ 115 (591)
T KOG0057|consen 36 LGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFR 115 (591)
T ss_pred HHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555556667777777553111111122223344556677778888999999999999999999999999999
Q ss_pred HHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001041 145 TILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLG-GFLIAFIKGWLLTLVMLSSIPLLAMSGGV 223 (1178)
Q Consensus 145 ~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 223 (1178)
+.++.++++|-+. .+|.+.+.+.+-...|...+.-.+..++..++.+.. ...+..-.+...+++++..+..+..+...
T Consensus 116 ~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~ 194 (591)
T KOG0057|consen 116 HLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIV 194 (591)
T ss_pred HHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEe
Confidence 9999999999875 899999999999999888877666666555443322 22334445555566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 224 MAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA 303 (1178)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1178)
...+..+..++..++.++..+.+-+.|.|-.+||.||-|+.+.++|.....+..+...+.....++....-..+..+..+
T Consensus 195 ~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~ 274 (591)
T KOG0057|consen 195 VTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALT 274 (591)
T ss_pred ehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHH
Confidence 66777777788888999999999999999999999999999999999999888887766655544433222233333334
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCccc
Q 001041 304 LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGD 383 (1178)
Q Consensus 304 ~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (1178)
...+.+..-+.++.++.+.++.+.....++..++..+......+.++..-+...+........+ .....+....++.
T Consensus 275 ~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i---~~~~~~i~~~~~~ 351 (591)
T KOG0057|consen 275 FIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDI---QEAALPIELFGGS 351 (591)
T ss_pred HHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhh---hhccCCcccCCCc
Confidence 4444555556677889888877666666777777776666666666666555554433221111 1111223334567
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+|+||+|+|+. ++++|+++||+|++||+|||||+|||||||++++|+|+++ ++|+|+|||+|+++++++.+|+.||
T Consensus 352 I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 999999999973 4579999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|||||..||++||-+||.+|.+.++++++.++|+.++++|.+.++|+|++|.+||+|..|||||||||+||||+++||+|
T Consensus 429 ~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~I 508 (591)
T KOG0057|consen 429 VVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPI 508 (591)
T ss_pred EeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHh
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
+++|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++|+|++.|.|+|+||++ +.+.|+.++..|.
T Consensus 509 l~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 509 LLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred EEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 999999999999999999999999889999999999999999999999999999999999999999 5889999886543
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=706.84 Aligned_cols=564 Identities=29% Similarity=0.416 Sum_probs=461.9
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
+++++++.++.. ..+.+.+++.++..++....+++++.++|...... . .....+.+++++++..+..++...
T Consensus 7 ~~~l~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~ 78 (588)
T PRK13657 7 YARVLQYLGAEK-RLGILLAVANVLLAAATFAEPILFGRIIDAISGKG---D----IFPLLAAWAGFGLFNIIAGVLVAR 78 (588)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---c----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554332 23334444445555555566667888888654321 1 111112222223333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
...+...+...+++..+++++++.|..+|++. ++|++++|+++|++.+.+.+...+..++..+..+++.++++++++|.
T Consensus 79 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (588)
T PRK13657 79 HADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWR 157 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666677799999999999999874 99999999999999998887777777777777777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++++|+.+++..++.+..++..++..+..++..+.+.|.+.|+++||.|+.++.+.+++.+...+..+...+...
T Consensus 158 l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (588)
T PRK13657 158 LSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLS 237 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888888889999999999999999999999999999999988887777666665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++...+..++.....++.+++|.+++..+.++.|.+++++.++.....++..+...+..+..+..+..|+.+.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~ 317 (588)
T PRK13657 238 WWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVP 317 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 55555545555555556667778888899999999999888777777777888888888888889999999998887654
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+... ......+..+.|+++||+|+|+++ +++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i 394 (588)
T PRK13657 318 DVRDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILI 394 (588)
T ss_pred ccCCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 322111 111112234579999999999742 46999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||.|+++++.+++|++|+||||+|++|++||||||.++.|+.++++++.+++.+++++++.++|+|+||.+|++|.+|||
T Consensus 395 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 395 DGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred CCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||||+||||++++|+|+|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999887899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 001041 606 KLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1178)
++++. ++.|.+++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (588)
T PRK13657 555 ELVAR-GGRFAALLRAQ 570 (588)
T ss_pred HHHHC-CChHHHHHHHh
Confidence 99977 68899888654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-74 Score=706.36 Aligned_cols=524 Identities=23% Similarity=0.328 Sum_probs=431.0
Q ss_pred HhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 49 LFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWM 128 (1178)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 128 (1178)
++++.++.++ .+++.+++.++..++....|+++++++|....... .. ........++++.++..++.++..++..
T Consensus 4 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02868 4 ILPLLQPRTR-RLVVAILLGALALGSAVALLGVSAWLISRAAEMPP---VL-YLSVAAVAVRAFGIGRAVFRYLERLVGH 78 (529)
T ss_pred HHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch---hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443332 23344444555555555666778888886542211 00 0111111122344556677778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 129 ITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTL 208 (1178)
Q Consensus 129 ~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 208 (1178)
..+.++..++|.++++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.+++
T Consensus 79 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 79 DAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88899999999999999999999999874 99999999999999999999888888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 209 VMLSSIPLLAMSGGVMAIM-ISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1178)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1178)
++++.+|++.++...+.+. .++..++.++..++..+.+.|.++|+++||+|++|+.+.+++.+...+..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777776655444433 455556667778899999999999999999999999999999999888888777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001041 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1178)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1178)
+....+..++..+..++.+++|++++..+.++.+.+++++.+......++..+......+..+..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 66666666666666667778888888899999998888776666666777777778888999999999999999776543
Q ss_pred CcCCCC-CcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC
Q 001041 368 DAYDTK-GKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1178)
Q Consensus 368 ~~~~~~-~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1178)
+..+.. ....++..+.|+++||+|+|+++ +++|+|+||+|+|||+++||||||||||||+++|+|+++|++|+|.+|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 221110 11112234579999999999753 369999999999999999999999999999999999999999999999
Q ss_pred CeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 447 GINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 447 g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
|+|++++ .+++|++|+||||+|++|++||||||.+|.|+.++++++++++.+++++++.++|+|+||.+||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCc
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~ 581 (1178)
||||||||||++++|+|||||||||+||+++++.+++.+++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-77 Score=649.36 Aligned_cols=505 Identities=29% Similarity=0.420 Sum_probs=427.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 116 SGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGG 195 (1178)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~ 195 (1178)
.+++.-++++.|.....-+.+++-..+++|+.+.+++|+-++ .+|+++.-+.+-.+.+. .+...+..+.-.+.-+...
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va 349 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVA 349 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhh
Confidence 345566677778778888888999999999999999999875 89999999988777765 4444444444444443333
Q ss_pred HHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHH
Q 001041 196 FLI-AFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLV 274 (1178)
Q Consensus 196 ~~~-~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~ 274 (1178)
++. ...++|+.++++++++.++..+...+.....+.+++....+.+....-.+++-+..|||-|++|+.+.++|++...
T Consensus 350 ~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil 429 (790)
T KOG0056|consen 350 MVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAIL 429 (790)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHH
Confidence 322 3346677888777777666655555555566666676777777788888999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 275 TAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354 (1178)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 354 (1178)
+..+..++......+...+-+.+.....+...++..+.+..+..+.|..+.+..+.+++..++++.......++.+..-.
T Consensus 430 ~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDm 509 (790)
T KOG0056|consen 430 KYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDM 509 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhH
Confidence 88877766554433333232333333333334444566667788999887777888888889999888899999999999
Q ss_pred HHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 355 FKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 355 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++.+.+++|..+.+. .++....+|.|+|+||+|.|+ +++|+|+||||+++||+.+|+|||||+||||++++|+|
T Consensus 510 Enmfdllkee~eVvd~P~-a~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfR 586 (790)
T KOG0056|consen 510 ENMFDLLKEEPEVVDLPG-APPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFR 586 (790)
T ss_pred HHHHHHhhcCchhhcCCC-CCCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHH
Confidence 999999998887654332 234445679999999999996 46799999999999999999999999999999999999
Q ss_pred cCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 001041 435 FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514 (1178)
Q Consensus 435 ~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t 514 (1178)
+++.++|+|.|||+|++.++.+.+|++||+||||..+||+||.+||.+++|.+++|++.++++++++||.|..+|+|++|
T Consensus 587 ffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t 666 (790)
T KOG0056|consen 587 FFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNT 666 (790)
T ss_pred HhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEe
Q 001041 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1178)
Q Consensus 515 ~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1178)
.|||+|-.||||+|||+|+||+++++|.|++|||+|||||.+||+.||.++.++.++||.|+|+||++++-+||.|+|++
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS 746 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEecChhHHhcCCCchHHHHHHHHhhc
Q 001041 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEAN 625 (1178)
Q Consensus 595 ~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~ 625 (1178)
+|+|+|.|+|+||+.+.+|.|++|++.|...
T Consensus 747 ~G~IvErG~HeeLl~rdgG~Ya~MWq~qqa~ 777 (790)
T KOG0056|consen 747 NGRIVERGRHEELLKRDGGAYADMWQAQQAM 777 (790)
T ss_pred CCeEeecCcHHHHHhccCCcHHHHHHHHHhc
Confidence 9999999999999999899999999866543
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-73 Score=707.39 Aligned_cols=567 Identities=34% Similarity=0.556 Sum_probs=470.8
Q ss_pred HHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 48 KLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCW 127 (1178)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 127 (1178)
.++++.++..+ .+.+.+++.++..++....|++++.++|......+. .........++++.++..++.+++.+..
T Consensus 8 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (576)
T TIGR02204 8 ALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS----GLLNRYFAFLLVVALVLALGTAARFYLV 82 (576)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443322 233444455555666666777888888864322111 1122222223333444556667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 128 MITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLT 207 (1178)
Q Consensus 128 ~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (1178)
...+.+....+|..+++++++.|.++|++. +.|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.++
T Consensus 83 ~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (576)
T TIGR02204 83 TWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLT 161 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 888899999999999999999999999874 8999999999999999999888888888888888888888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 208 LVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAA 287 (1178)
Q Consensus 208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1178)
+++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||.+++|+.+..++.+..++......+.....
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (576)
T TIGR02204 162 SLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTR 241 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888999999999999999999999999999999988887766655555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 001041 288 GIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEI 367 (1178)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 367 (1178)
.+......++..+..++.+++|++++..+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 321 (576)
T TIGR02204 242 ALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDI 321 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 44333333344455556677888888899999999888777777777788888889999999999999999998765542
Q ss_pred CcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 368 DAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 368 ~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
+..........+..+.|+++||+|+||++.++++|+|+||+++|||+++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 322 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 322 KAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred CCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 21111111112234579999999999864336799999999999999999999999999999999999999999999999
Q ss_pred eecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 448 INLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 448 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
+|+.+++.+++|++++|+||+|++|++||||||.++.|+.++++++++++.+++.+++..+|+|++|.+|++|.+|||||
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq 481 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|||++||||++++|++||||||||+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|+++
T Consensus 482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l 561 (576)
T TIGR02204 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAEL 561 (576)
T ss_pred HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCchHHHHHHH
Q 001041 608 VEDPEGAYSQLIRL 621 (1178)
Q Consensus 608 ~~~~~~~~~~~~~~ 621 (1178)
.++ ++.|++++..
T Consensus 562 ~~~-~~~~~~l~~~ 574 (576)
T TIGR02204 562 IAK-GGLYARLARL 574 (576)
T ss_pred HHc-CChHHHHHhh
Confidence 886 6788887653
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=702.49 Aligned_cols=540 Identities=25% Similarity=0.374 Sum_probs=454.6
Q ss_pred HHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhh
Q 001041 76 PLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFD 155 (1178)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~ 155 (1178)
...|++++.++|........ ......+...++++.++..++.++..+.....+.+...++|..+++++++.|+++|+
T Consensus 12 ~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~ 88 (569)
T PRK10789 12 LIPPKVVGIIVDGVTEQHMT---TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL 88 (569)
T ss_pred HHHHHHHHHHHHHhccCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc
Confidence 34455777778865422111 111222233333344455666777777777788999999999999999999999998
Q ss_pred ccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 156 NETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIA-FIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR 234 (1178)
Q Consensus 156 ~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (1178)
+. ++|++++|+++|++.+...+...+..++..+..+++.++++ ++++|.+++++++.+|+++++...+.+...+..++
T Consensus 89 ~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 167 (569)
T PRK10789 89 RH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKL 167 (569)
T ss_pred CC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 99999999999999999877777777777655555554444 58999999988888899888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 235 GQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLIL 314 (1178)
Q Consensus 235 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 314 (1178)
.++..++..+.+.|.++|+++||+|++|+.+.+++.+...+..+...+.....+........+..+..++.+++|.+++.
T Consensus 168 ~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~ 247 (569)
T PRK10789 168 AQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247 (569)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999998887777766666555554444444444555566778888888
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECC
Q 001041 315 EEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYP 394 (1178)
Q Consensus 315 ~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~ 394 (1178)
.+.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.+... ...++..+.|+++|++|+|+
T Consensus 248 ~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~ 324 (569)
T PRK10789 248 NGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYP 324 (569)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECC
Confidence 999999999888777777777888888888899999999999999987755422111 11122346799999999997
Q ss_pred CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcc
Q 001041 395 ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1178)
Q Consensus 395 ~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 474 (1178)
.. ++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++++++.+++|++++||||+|++|++
T Consensus 325 ~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ 403 (569)
T PRK10789 325 QT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD 403 (569)
T ss_pred CC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc
Confidence 53 35799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1178)
|++|||.++.++.++++++.+++.+++++++.++|+|++|.+|++|.+||||||||++||||++++|+|+|||||||+||
T Consensus 404 ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 404 TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 99999999988889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhh
Q 001041 555 AESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1178)
Q Consensus 555 ~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1178)
+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|++++++ ++.|++++..++.
T Consensus 484 ~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 99999999999988889999999999999999999999999999999999999987 6889998876543
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=638.10 Aligned_cols=505 Identities=23% Similarity=0.363 Sum_probs=423.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 109 FVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQL 188 (1178)
Q Consensus 109 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~ 188 (1178)
.=++|+...+..|+.....+-...++...+|.++|+++...+..-.... .+|+++||+..|++.+|+.+-..+.+++..
T Consensus 64 VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a 142 (573)
T COG4987 64 VRGLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVA 142 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHH
Confidence 3367888889999999988888899999999999999999888877764 899999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHH
Q 001041 189 MATFLGGFLIAFIKGWLLTLVMLSSIPLL-AMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMS 267 (1178)
Q Consensus 189 ~~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~ 267 (1178)
+..+.+..+...+++|.+++.+...+.+. +++...+.+.-++..++....++...+++.|.++|....+.||.++.+..
T Consensus 143 ~~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~ 222 (573)
T COG4987 143 LVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRT 222 (573)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHH
Confidence 87777777777778888776555444433 33444455556666667777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 001041 268 NYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYA-LSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEAS-PCLS 345 (1178)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~~ 345 (1178)
.+.+......+...+...+.++......++.....+ ..+|.+.. ...|..+.......++.++....++..+. ..+.
T Consensus 223 ~l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~-~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~ 301 (573)
T COG4987 223 ALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQ-VGAGALAQPGAALALLVIFAALEAFEPLAPGAFQ 301 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 999988888888777777777766665554444333 44555432 22334442222222222233333333333 3457
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcH
Q 001041 346 AFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGK 425 (1178)
Q Consensus 346 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGK 425 (1178)
...+...++.|+.+..+++++...++. +.+...+ .++++||+|+||++ ++++|+|+||++++||++||+|+|||||
T Consensus 302 ~lgq~~~Sa~Rl~~i~~q~~e~~~~~~--~~~~~~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGK 377 (573)
T COG4987 302 HLGQVIASARRLNDILDQKPEVTFPDE--QTATTGQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGK 377 (573)
T ss_pred HhhHHHHHHHHHhhhccCCcccCCCcc--ccCCccc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCH
Confidence 778888999999999988877544311 1111112 69999999999875 4689999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH
Q 001041 426 STVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI 505 (1178)
Q Consensus 426 Stl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i 505 (1178)
|||+++|.|.++|++|+|.++|.++..++.+.+|+.|++++|.+++|++|+|||+.+++|+++||+++++++.+++++.+
T Consensus 378 STllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~ 457 (573)
T COG4987 378 STLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLL 457 (573)
T ss_pred HHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh
Q 001041 506 DKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 506 ~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~ 585 (1178)
++.|+|++|.+||+|.+||||||||++|||++++|++++||||||.+||+.||+++.+.+.+..++||+|+||||+..++
T Consensus 458 ~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le 537 (573)
T COG4987 458 ESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE 537 (573)
T ss_pred HhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001041 586 NADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 586 ~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1178)
.||+|+|||+|+++|+|+|.+|+++ ++.|.++++
T Consensus 538 ~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q 571 (573)
T COG4987 538 RMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQ 571 (573)
T ss_pred hcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHhc
Confidence 9999999999999999999999996 788988865
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-72 Score=694.54 Aligned_cols=564 Identities=27% Similarity=0.388 Sum_probs=463.7
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++++++|.++.++ .+++.+++.++..++....|++++.++|....... . . .....+++++++..+..++...
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~---~---~-~~~~~~~~~~~~~~~~~~~~~~ 78 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKSD---V---L-PTLALWAGFGVFNTIAYVLVAR 78 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---H---H-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455565554333 34455666666667777788899999987543211 0 1 1111112222333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
.......+...++|.+++++++++|+++|++. ++|++++|+++|++.+...+...+...+..+..+++.+++++.++|.
T Consensus 79 ~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 79 EADRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666677799999999999999974 89999999999999999888877777777777777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++++|+++++..++.+..++..++..+..++..+.+.|.++|+++||+|+.|+.+.+++.+...+..+...+...
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999888888888888888888888888999999999999999999999999999999888777666655555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++...+..++.....++.+++|.+++..+.++.|.+++++.+......++..+......+..+..+.+|+.+.++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 55554444444555555666778888888999999998887766666667777777888888889999999999887654
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+..... .....++..+.|+++||+|+|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 318 QREEPA-DAPELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccCCc-cCCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 322111 111112234579999999999743 46899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||.++.+++.+++|++++||||+|++|++|++|||.++.++.++++++.+++.+++++++.++|+|++|.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
|||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++.+..||+|++|++|++++.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 001041 606 KLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1178)
+++++ ++.|++++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99987 68899888754
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-73 Score=759.82 Aligned_cols=500 Identities=19% Similarity=0.288 Sum_probs=407.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 114 IGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFL 193 (1178)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~ 193 (1178)
++..++.+++.+++.+.+.+++.++|.++++++++.|++||++ +++|+++||+++|++.+++.++..+..++..+..++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~-~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i 1014 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVL 1014 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566667777788889999999999999999999999997 599999999999999999999999999999988888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHH
Q 001041 194 GGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFL 273 (1178)
Q Consensus 194 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~ 273 (1178)
+.++++++++|++++++++++.+++++..++.+..++..+......++..+++.|++.|+.+||+|++++.+.+++.+..
T Consensus 1015 ~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~ 1094 (1490)
T TIGR01271 1015 GAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKAL 1094 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHH
Confidence 88888888888765544444444444455555555556666677788899999999999999999999999999999887
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 274 VTAYKSGVQEGL---AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAG 350 (1178)
Q Consensus 274 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~ 350 (1178)
+...+....... +..........+..+ .++.++++.. ....+.+..++.+.+....++..+...+..+...
T Consensus 1095 ~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~-~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~ 1168 (1490)
T TIGR01271 1095 NLHTANWFLYLSTLRWFQMRIDIIFVFFFI-AVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGL 1168 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 755443332222 222222221111111 1111222221 1233333333334444555666777778888899
Q ss_pred HHHHHHHHHHhccCCCCCcCCC----------------CCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCE
Q 001041 351 QAAAFKMFETINRKPEIDAYDT----------------KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTT 414 (1178)
Q Consensus 351 ~~~~~r~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~ 414 (1178)
+.+.+|+.++++.++|...... ..++.|+..|.|+|+||+|+|+.. .+++|+|+||+|+|||+
T Consensus 1169 ~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~Gek 1247 (1490)
T TIGR01271 1169 MRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQR 1247 (1490)
T ss_pred HHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCE
Confidence 9999999999876655321100 011124556889999999999753 46899999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHH
Q 001041 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRV 494 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~ 494 (1178)
+||||+||||||||+++|+|+++ .+|+|.|||+|+++++++++|++|+||||+|.+|+||||+||+.. ..++++++++
T Consensus 1248 vaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~-~~~tdeei~~ 1325 (1490)
T TIGR01271 1248 VGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY-EQWSDEEIWK 1325 (1490)
T ss_pred EEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc-cCCCHHHHHH
Confidence 99999999999999999999997 789999999999999999999999999999999999999999864 4579999999
Q ss_pred HHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeE
Q 001041 495 ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574 (1178)
Q Consensus 495 ~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~ 574 (1178)
+++.+++++++..+|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++.++++|+
T Consensus 1326 aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~Tv 1405 (1490)
T TIGR01271 1326 VAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTV 1405 (1490)
T ss_pred HHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhh
Q 001041 575 VIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1178)
Q Consensus 575 i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1178)
|+||||++++.+||+|+||++|+|+|.|+|++|+++ ++.|+++++....
T Consensus 1406 I~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1406 ILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred EEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 999999999999999999999999999999999975 7899999875543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-72 Score=685.94 Aligned_cols=524 Identities=24% Similarity=0.341 Sum_probs=438.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1178)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1178)
++++++.++.+++.+..|++.++++|........ ......+...+++++++..++.+++.+...+.+.+...++|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 82 (529)
T TIGR02857 6 ALLGLLGALGALLIIAQAWLLARVIDGLISAGEP---LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRER 82 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666667777788888988876311111 1222333444555666677888888888889999999999999
Q ss_pred HHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001041 142 YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221 (1178)
Q Consensus 142 ~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (1178)
+++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++.+|+..++.
T Consensus 83 l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~~~ 161 (529)
T TIGR02857 83 LLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPIFM 161 (529)
T ss_pred HHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999874 999999999999999999988888888888888888888889999999998888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301 (1178)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1178)
.++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+.............++....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (529)
T TIGR02857 162 ILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFATLS 241 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778777777888888889999999999999999999999999999998887776666555554444333333333333
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCc
Q 001041 302 YALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIR 381 (1178)
Q Consensus 302 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (1178)
.++.+.+++..+..+.++.+.++.++.+......++..+...+..+..+..+.+|+.+.++.+++... . .....+..
T Consensus 242 ~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~--~~~~~~~~ 318 (529)
T TIGR02857 242 VALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-K--APVTAAPA 318 (529)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-C--cCCCCCCC
Confidence 33333344555567889999888776666666677777778888999999999999999875433211 1 11111123
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++||+|+||+. ++++|+|+||+|+|||+++||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++
T Consensus 319 ~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhh
Confidence 579999999999854 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
++||||+|++|++||||||.++.++.++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||++++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEE
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
+|+|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|
T Consensus 478 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 478 PLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-70 Score=670.51 Aligned_cols=530 Identities=21% Similarity=0.288 Sum_probs=438.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYL 143 (1178)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 143 (1178)
.+++.++..++....|++++.++|......+. .....+.+.++++.++..++.+++.++....+.+...++|.+++
T Consensus 11 ~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 86 (544)
T TIGR01842 11 VGLFSFVINILMLAPPLYMLQVYDRVLTSGSV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQPIF 86 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555666888888865432211 12222333344445556677788888888889999999999999
Q ss_pred HHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 144 KTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGG 222 (1178)
Q Consensus 144 ~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 222 (1178)
+++++.|+. ..+...+++.+|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|+++++..
T Consensus 87 ~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~i~~ 159 (544)
T TIGR01842 87 AASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVGLAL 159 (544)
T ss_pred HHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 999999983 2356688899999999988766 4444555444444 3456788899998888887888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 223 VMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302 (1178)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1178)
+..+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+.....+....+..++.....
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (544)
T TIGR01842 160 LNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRIVLQ 239 (544)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777888888999999999999999999999999999999998888777666665555555444444444455
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcc
Q 001041 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRG 382 (1178)
Q Consensus 303 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (1178)
++.+++|..++..+.++.|.+++++.+......++..+......+..+..+.+|+.++++.+++.... ...+...+
T Consensus 240 ~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~~~~ 315 (544)
T TIGR01842 240 SLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPEPEG 315 (544)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCCCCC
Confidence 56677888888999999999988877777777788888888899999999999999999765542211 11122345
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++|+|++. ++++|+|+||+++|||+++|+||||||||||+++|+|+++|++|+|.+||+++.+++.+.+|+++
T Consensus 316 ~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i 394 (544)
T TIGR01842 316 HLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394 (544)
T ss_pred eEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhhe
Confidence 79999999999743 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+||||+|++|++|++|||.++.++.++++++++++.++++++++++|+|++|.+|++|.+||||||||++||||++++|+
T Consensus 395 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 395 GYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred EEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998777789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhc
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+||||||||+||+++++.+.+.++++. +++|+|+||||++.+..||+|++|++|++++.|+|+++++
T Consensus 475 ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 475 LVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999998875 6799999999999999999999999999999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-70 Score=589.09 Aligned_cols=489 Identities=31% Similarity=0.440 Sum_probs=414.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHH
Q 001041 127 WMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATF-LGGFLIAFIKGWL 205 (1178)
Q Consensus 127 ~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 205 (1178)
+...+..+...+--..|.|+.++++.|+-++ .+|.+...+..-...|+..+...+...+-.++-+ +..++....++|+
T Consensus 6 fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~ 84 (497)
T COG5265 6 FSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWW 84 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccH
Confidence 3344555556666678899999999998765 7887777776666666666665555555554443 3445566678899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
.+++.++.+.++.++............+...++.++......++|-+..++|.||.|+.+..+|...++.+.+...+...
T Consensus 85 f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~ 164 (497)
T COG5265 85 FALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHV 164 (497)
T ss_pred HHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHH
Confidence 99888888888777766666666666677777888899999999999999999999999999999999988888777655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++....-..+...........+...+..+.+|.|.++..-.+.++.+.++..+......+.++..-.+++++.+..+.
T Consensus 165 Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~ 244 (497)
T COG5265 165 SLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEA 244 (497)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccch
Confidence 44433222223333333344455566677889999998877777778788888777788899999999999999988776
Q ss_pred CCCcCCCCCcccC-CCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 366 EIDAYDTKGKILD-DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 366 ~~~~~~~~~~~~~-~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
+..+.. +.++.+ ...|.+.|+||+|.|.. .+++|+++||++++|++++|||++|+||||++++|.|+|++++|.|.
T Consensus 245 ~v~d~p-da~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~ 321 (497)
T COG5265 245 EVSDAP-DAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321 (497)
T ss_pred hhccCC-CCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEE
Confidence 654332 223333 34678999999999964 56899999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 445 IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 445 i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
+||.|+++...+.+|+.||.||||..||++|+..||.+|.|..++++++.+++.++++++++.+|+|++|.|||+|-.||
T Consensus 322 id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklS 401 (497)
T COG5265 322 IDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401 (497)
T ss_pred EcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
||||||+|+||+++++|+||+|||+|||||.+||+.||..+++..+++|.++|+||++++.+||.|+||++|+|+|.|+|
T Consensus 402 ggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h 481 (497)
T COG5265 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTH 481 (497)
T ss_pred CchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHH
Q 001041 605 SKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~~ 620 (1178)
++|++. +|.|++|+.
T Consensus 482 ~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 482 EELLAA-GGLYAEMWR 496 (497)
T ss_pred HHHHHc-CChHHHHhc
Confidence 999998 899999874
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-66 Score=633.98 Aligned_cols=535 Identities=17% Similarity=0.138 Sum_probs=418.9
Q ss_pred hHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1178)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1178)
..++++++++...+..+++++++.++.+++....+++++.+++.... .. . .. .+.++++.++..++.++..
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~--~~-~--~~----~~~~~~~~~~~~~~~~~~~ 74 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENF--LG-Q--GS----LFSFGGLCLLALLFRIGAD 74 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--cc-c--hH----HHHHHHHHHHHHHHHHHHH
Confidence 35666676661233444455555555555556666666666553110 00 0 01 1113334445567778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001041 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1178)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1178)
++....+.+...++|..+++++++.|+.+|++. ++|++++|+++|++.+++.+.. +..++..+..+++.++++++++|
T Consensus 75 ~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ 152 (555)
T TIGR01194 75 IFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSV 152 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhH
Confidence 888889999999999999999999999999974 9999999999999999998864 66677777777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH--HHHHHHHHHHHHHHHHHHH
Q 001041 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK--QAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~~~~ 282 (1178)
.+++++++.+|+.+++..+..++.++...+.++..++..+.+.|.+.|++++|+|+.++ ...+++.+...+..+...+
T Consensus 153 ~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
T TIGR01194 153 PMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHII 232 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999888888877777777677777777777888899999999999999999999954 4566677766666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
..........+..++..+...++++++... +.++.|.+++++.+......++..+...+..+..+..+.+|+.+.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~ 309 (555)
T TIGR01194 233 EILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGE 309 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 443333322222233333333334444332 57888888888777777778888888999999999999999999875
Q ss_pred cCCC--CCcC-CC-CCc---ccCCCcccEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 363 RKPE--IDAY-DT-KGK---ILDDIRGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 363 ~~~~--~~~~-~~-~~~---~~~~~~~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
.+++ .... .. ... +.....+.|+++||+|+|++++ .+++|+|+||++++||+++||||||||||||+++|+
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~ 389 (555)
T TIGR01194 310 RFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFC 389 (555)
T ss_pred hhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 3211 1100 00 000 1112246799999999997532 236999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 001041 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513 (1178)
Q Consensus 434 g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 513 (1178)
|+++|++|+|.+||+|+++++.+++|++++||+|+|++|++|+++|+ .++.++++++++++.+++++++..+|+|++
T Consensus 390 g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~ 466 (555)
T TIGR01194 390 GLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDGGFS 466 (555)
T ss_pred CCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhcccccccC
Confidence 99999999999999999999999999999999999999999999995 356788999999999999999999999999
Q ss_pred chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHH-HH-hcCCeEEEEecCcchhhccCEEE
Q 001041 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALD-RI-MVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 514 t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~-~~-~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
|. .+||||||||++||||++++|+|+|||||||+||+++++.+.+.+. .. .+++|+|+||||++++..||+|+
T Consensus 467 t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~ 541 (555)
T TIGR01194 467 TT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQII 541 (555)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 94 7899999999999999999999999999999999999999988764 33 36899999999999999999999
Q ss_pred EEeCCEEEEe
Q 001041 592 VIHRGKIVEK 601 (1178)
Q Consensus 592 ~l~~G~i~~~ 601 (1178)
+|++|+++|.
T Consensus 542 ~l~~G~i~~~ 551 (555)
T TIGR01194 542 KLAAGCIVKD 551 (555)
T ss_pred EEECCEEEEe
Confidence 9999999874
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-66 Score=626.30 Aligned_cols=464 Identities=25% Similarity=0.360 Sum_probs=422.8
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
...+++....+++..++-.++.+++..++..+.|++...++|.+..... ........+.++++++...++.+++.+++
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~--~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDAS--RSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556667777777777777777777788888888888764322 22233445556667788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++-.++|+|++++|++||+ ++++|++++|+. |++.|+++++..+...+.++.++++.+++|++++|+|
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 589999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++.+|++++...+..+++++..++.-...++.++.+.|++.|++|||+.+.|.++..+|++...++.+...+....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
......+..++..+..++++|+|++++.+|.+|+|.+++|.++...+..|+.++.+++.++++...+.+|+.++++.|+|
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
.+.+.. ....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||+|||||+||||||||+++|.|+|+|++|+|++|
T Consensus 456 ~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 456 QEGDKT-LIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred cccccc-cccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 543321 22345578999999999999865 3479999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+.++++++||++|++||||++||+|||||||++++ +++++||+++||+.|++||||++||+||||+|+
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~-p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGN-PEATDEEIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhcccccccccc
Confidence 99999999999999999999999999999999999996 589999999999999999999999999999985
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=559.81 Aligned_cols=519 Identities=22% Similarity=0.307 Sum_probs=426.1
Q ss_pred HHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc
Q 001041 77 LMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDN 156 (1178)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~ 156 (1178)
..+.++-++-|....+.+. ..+....+..+++-++.+++-+++.....+.+.++-.++...++.+.++.+...-
T Consensus 41 ~~~lyMLQVyDRVL~S~s~----~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~~~-- 114 (580)
T COG4618 41 TGPLYMLQVYDRVLPSRSV----PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLLRR-- 114 (580)
T ss_pred hhhHHHHHHHhhhccCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHhhc--
Confidence 3344555666766654332 1222222233334445667788888888888999999999999998887776532
Q ss_pred cCCccHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 157 ETNTGEVVGRMSGDTVLIQDAMGE-KVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRG 235 (1178)
Q Consensus 157 ~~~~G~i~~r~s~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1178)
..|+=..-+ +|.+.++.+++. ....++...|+.+ .+.++|.+++++.++.++...+++.+..+-....++-.++.
T Consensus 115 --~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~-yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p~~eA 190 (580)
T COG4618 115 --GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPL-YLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKPLKEA 190 (580)
T ss_pred --CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 334333333 599999999885 5566666666544 45677888888888887777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 236 QGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILE 315 (1178)
Q Consensus 236 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 315 (1178)
.+...+++.+...+..|..+|++.|+.....++|.+.............-..+......-.+-.+.....+..|++++..
T Consensus 191 ~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~Lvi~ 270 (580)
T COG4618 191 SEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAWLVIK 270 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcceeeEEc
Confidence 88888899999999999999999999999999999888777666555554444444455555556666777789999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCC
Q 001041 316 EGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPA 395 (1178)
Q Consensus 316 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~ 395 (1178)
+.+|+|.+++.....-....++......+.++..++.+..|+.+.+.+.|+..+ ..+.+..+|.+.++++++.-|+
T Consensus 271 ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~~PPg 346 (580)
T COG4618 271 GEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTAAPPG 346 (580)
T ss_pred CcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeeecCCC
Confidence 999999887654444344457777788888999999999999999987665321 2344455789999999998765
Q ss_pred CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCccc
Q 001041 396 RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475 (1178)
Q Consensus 396 ~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~t 475 (1178)
. ++|+|+++||++++||-++||||||||||||.++|.|..+|.+|.|++||.|++..+.+.+-++|||.||+-.||+||
T Consensus 347 ~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GT 425 (580)
T COG4618 347 Q-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGT 425 (580)
T ss_pred C-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCc
Confidence 4 578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 476 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
|+|||+-..++.+++.+.++.+.++.||.|.++|+||||.||+.|.+|||||||||+||||+|.+|.+++||||-|+||.
T Consensus 426 IaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~ 505 (580)
T COG4618 426 IAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDS 505 (580)
T ss_pred HHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcch
Confidence 99999976678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+.|..+.++|.... +++|+|+||||++.+..+|+|++|++|++..+|+-+|.+++
T Consensus 506 ~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 506 EGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred hHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999997765 68999999999999999999999999999999999998764
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-62 Score=595.00 Aligned_cols=464 Identities=19% Similarity=0.200 Sum_probs=358.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 117 GIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGF 196 (1178)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~ 196 (1178)
.++.++..++..+.+.+...++|.++++++++.|+++|++. ++|++++|+++|++.+...+. .+..++..++.+++.+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~ 139 (547)
T PRK10522 62 MAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSA 139 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44566777778888899999999999999999999999974 999999999999999998665 4666777777888888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcH---HHHHHHHHHHH
Q 001041 197 LIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGE---KQAMSNYKKFL 273 (1178)
Q Consensus 197 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~ 273 (1178)
+++++++|.+++++++.+|+.+++..++.+..++..++.++..++..+.+.|.++|+++++ ++.+ +.+.+++.+..
T Consensus 140 ~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~ 218 (547)
T PRK10522 140 AYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDA 218 (547)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHH
Confidence 8899999999999998899888888888888888888888889999999999999999996 4433 35566777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 274 VTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAA 353 (1178)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~ 353 (1178)
++..+...+.............++..+...++++.+.... ..+.+.+..+..+.+....++..+...+..+..+..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a 295 (547)
T PRK10522 219 QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFYMANSLG---WADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVA 295 (547)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555444433333222222211222222222333333211 1122222222222233345777778888889999999
Q ss_pred HHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 354 AFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 354 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
.+|+.++.+.+++.+..+ ..+. +..+.|+++|++|+|++ ++++|+|+||+++|||+++|+||||||||||+++|+
T Consensus 296 ~~ri~~l~~~~~~~~~~~--~~~~-~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~ 370 (547)
T PRK10522 296 FNKLNKLALAPYKAEFPR--PQAF-PDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLT 370 (547)
T ss_pred HHHHHHHhcccccccccc--cccc-CcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999875433211111 1111 11357999999999974 246999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 001041 434 RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID 513 (1178)
Q Consensus 434 g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~ 513 (1178)
|+++|++|+|.+||+|+++++.+++|++++||||+|++|++|+++| + +..++++++++++.+++.+++. .|+|.
T Consensus 371 g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~- 444 (547)
T PRK10522 371 GLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR- 444 (547)
T ss_pred CCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-
Confidence 9999999999999999999999999999999999999999999999 2 3456666666666655544432 12221
Q ss_pred chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEE
Q 001041 514 TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 514 t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
.+|.+||||||||++||||++++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||++.+..||+|+
T Consensus 445 ----~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~ 520 (547)
T PRK10522 445 ----ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLL 520 (547)
T ss_pred ----CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEE
Confidence 1378999999999999999999999999999999999999999999987654 4799999999999999999999
Q ss_pred EEeCCEEEEe
Q 001041 592 VIHRGKIVEK 601 (1178)
Q Consensus 592 ~l~~G~i~~~ 601 (1178)
+|++|+++|.
T Consensus 521 ~l~~G~i~e~ 530 (547)
T PRK10522 521 EMRNGQLSEL 530 (547)
T ss_pred EEECCEEEEe
Confidence 9999999976
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-62 Score=601.84 Aligned_cols=458 Identities=20% Similarity=0.234 Sum_probs=394.1
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW--ALIYLALGAGSFLLSPAQSYFFAV 787 (1178)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1178)
++.+.+++++.++.++++.++..++....+++++.++|....... ....+ ...++++.++..++.++..++.+.
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777778888888888886543211 11111 111223455667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1178)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l 867 (1178)
.+.++..++|.++|+|++++|.+||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 868 IILVMLPLIGVSGYTQM-KFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 868 ~~l~~~pl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
++++.+|++.++...+. +..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|++..++..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888766654444 44456667777888999999999999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
+...++..++..+..++++++|++++.+|.+++|.++++..+...+..|+..+......++++..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCCCC-CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1027 DPSDES-GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1027 ~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
+..... .....+..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+||
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 221111 11112234679999999999743 369999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|++++ .+++|++|++|||||+||+|||||||+||+ ++++|||+++|++.|+++|||.+||+||||+|+
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 465 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGR-PDATDEELWAALERVGLADWLRSLPDGLDTVLG 465 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhc
Confidence 9999999 999999999999999999999999999995 479999999999999999999999999999985
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-61 Score=606.25 Aligned_cols=465 Identities=28% Similarity=0.388 Sum_probs=412.1
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
..++++.+.++.++.+..++++.++..++....+++++.++|....... .......+++++++.++..++.+++.+++
T Consensus 148 ~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 225 (711)
T TIGR00958 148 LLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGSF 225 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777777888888888888888888888889999999987753221 11122233344455566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++.+++.+++.+++++.++|++
T Consensus 226 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l 303 (711)
T TIGR00958 226 NYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRL 303 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++.+|+.+++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+....
T Consensus 304 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 383 (711)
T TIGR00958 304 TMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALA 383 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
.+........+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++++..+.+|++++++.+++
T Consensus 384 ~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 463 (711)
T TIGR00958 384 YAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPN 463 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 76666666666677777888999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
.++.. ...+.+..|.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 464 ~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 541 (711)
T TIGR00958 464 IPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLD 541 (711)
T ss_pred CCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEEC
Confidence 43211 1112234678999999999986555689999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+++++.+++|++|++|||||+||+|||||||+||. ++++|||+++|++.|++++||++||+||||.++
T Consensus 542 g~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ig 612 (711)
T TIGR00958 542 GVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVG 612 (711)
T ss_pred CEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCccc
Confidence 99999999999999999999999999999999999995 478999999999999999999999999999875
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-61 Score=590.56 Aligned_cols=448 Identities=30% Similarity=0.473 Sum_probs=400.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRI 796 (1178)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 796 (1178)
++ .+..+.++.++...+....++++..+++..... ......+...++++.++..++.++..++..+.+.+...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD----LGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 666777777777777788888888888876511 1122233444555555677788888888888889999999
Q ss_pred HHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 001041 797 RSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLI 876 (1178)
Q Consensus 797 r~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~ 876 (1178)
|.+++++++++|++||+ ++++|++++|+++|++.++..+.+....+...++.+++.+++++..+|++++++++.+|++
T Consensus 88 r~~~~~~l~~~~~~~~~--~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 88 RRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHhCCHHHhC--cCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999 5889999999999999999999999766776888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHH
Q 001041 877 GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFL 956 (1178)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (1178)
.+...+..++.++..+..++..++.++.+.|+++|+++||+|+.++.+.++|.+..+...+...+.....+...++...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888899999999999999999999999999999999999999999999999999888888888888889999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcc
Q 001041 957 LFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTIL 1036 (1178)
Q Consensus 957 ~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~ 1036 (1178)
..+...+++++|.+++..+.+++|.+++++.+...+..|+..+......++.+..+.+|++++++.+++..+.+.. .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~ 322 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---L 322 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999987654332211 2
Q ss_pred cCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH
Q 001041 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1178)
Q Consensus 1037 ~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~ 1116 (1178)
....|+|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|||||++|+|+|||+||+++++++
T Consensus 323 ~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 323 KDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred CCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHH
Confidence 334678999999999973 457999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1117 LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||++|++|||||+||+|||+|||+||++ ++|||||++|||.|++||||++||+||||.|+
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vg 460 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRP-DATDEEIEEALKLANAHEFIANLPDGYDTIVG 460 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCC-CCCHHHHHHHHHHhChHHHHHhCcccccceec
Confidence 9999999999999999999999999964 79999999999999999999999999999986
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-60 Score=592.11 Aligned_cols=462 Identities=19% Similarity=0.215 Sum_probs=392.1
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.+++++.+++++++.++..++....++++..++|....+... ......+..+++++.++..++.+++.++.+
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888899999999988888888888999999999876421111 111223344455566677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++.+.+..++..++.+++.++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++++|+.+++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888999999999999999999999999999999999999999998888877776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH---------HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV---------FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIF 1017 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~ 1017 (1178)
....++...+..+..+++++++++.+. |.+|+|.+ +.++.+...+..|+..+......++++..+.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555455455554443 77776654 23335556678899999999999999999999999
Q ss_pred HHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC
Q 001041 1018 AIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1178)
Q Consensus 1018 ~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p 1097 (1178)
++++.+++.+... ....+.+..++|+|+||+|.|++ +++||+|+||+|+|||++||||+||||||||+++|+|+| |
T Consensus 326 ~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 326 TFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 9998765322111 11111123457999999998863 346999999999999999999999999999999999999 9
Q ss_pred CCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1098 DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1098 ~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
++|+|++||+|+++++.+++|++|++|||||+||+|||||||+||+ +++||||+++||+.|++||||++||+||||.|+
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vg 480 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999999999995 479999999999999999999999999999985
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-60 Score=597.47 Aligned_cols=463 Identities=19% Similarity=0.265 Sum_probs=406.5
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.+++++.+...++++++..++....++++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (708)
T TIGR01193 144 LLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGTLGIISIGLIIAYIIQQILSYIQIFLLN 221 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777777777777778888899999987754321 112222333444555667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++||+ ++++|++++|++ |.+.+.+++...+..++..++.+++.++++++++|+++
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 298 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLF 298 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999 589999999998 99999999998888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++.+|+++++.+++.++.++..++.++..++.++.+.|+++|+++||+||.|+.+.++|.+..++..+...+.....
T Consensus 299 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (708)
T TIGR01193 299 LLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKAD 378 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888877
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 379 ~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 458 (708)
T TIGR01193 379 QGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEF 458 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777777888999999999999999999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
+.... ....++..|+|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 459 ~~~~~-~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg 535 (708)
T TIGR01193 459 INKKK-RTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNG 535 (708)
T ss_pred ccccc-ccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECC
Confidence 32211 0112334678999999999973 34799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||+||+|||||||++|..++++|||+++|++.|+++|||++||+||||.|+
T Consensus 536 ~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~ 606 (708)
T TIGR01193 536 FSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELS 606 (708)
T ss_pred EEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEec
Confidence 99999999999999999999999999999999999843479999999999999999999999999999885
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=590.15 Aligned_cols=453 Identities=20% Similarity=0.211 Sum_probs=402.5
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 714 NKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLI 793 (1178)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1178)
.++.++.+...++++++..++....++++..++|....... ......+++.++++.++..++.+++.++....+.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (686)
T TIGR03797 131 LRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMD 208 (686)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777778888888888887753211 1122333444555666778889999999999999999
Q ss_pred HHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 001041 794 QRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVML 873 (1178)
Q Consensus 794 ~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~ 873 (1178)
.++|.++|+|++++|++||+ ++++|++++|++ |++.+++++...+...+...+.+++.++++++++|++++++++++
T Consensus 209 ~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~ 285 (686)
T TIGR03797 209 ASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALA 285 (686)
T ss_pred HHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 589999999998 899999999998888888888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHH
Q 001041 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1178)
Q Consensus 874 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1178)
|+.+++.++..++.++..++.++..++.++.+.|+++|+++||+|+.|+++.++|.+..++..+...+..........+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (686)
T TIGR03797 286 LVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFN 365 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999988999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001041 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1178)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 1033 (1178)
.++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+.+....++.+..+.+|+.++++.+++.+...
T Consensus 366 ~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~--- 442 (686)
T TIGR03797 366 AVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK--- 442 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc---
Confidence 88888888899999999999999999999999999999999999999999999999999999999998765532211
Q ss_pred CcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 001041 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1178)
Q Consensus 1034 ~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~ 1113 (1178)
..+.+..|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||+|+++++
T Consensus 443 ~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~ 521 (686)
T TIGR03797 443 TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLD 521 (686)
T ss_pred CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCC
Confidence 1122345789999999999743 357999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
.+++|++|++|||||+||+|||||||++|+ + ++|||+++|++.|+++|+|++||+||||.++
T Consensus 522 ~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~-~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ig 583 (686)
T TIGR03797 522 VQAVRRQLGVVLQNGRLMSGSIFENIAGGA-P-LTLDEAWEAARMAGLAEDIRAMPMGMHTVIS 583 (686)
T ss_pred HHHHHhccEEEccCCccCcccHHHHHhcCC-C-CCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 999999999999999999999999999995 3 8999999999999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-59 Score=573.88 Aligned_cols=461 Identities=18% Similarity=0.174 Sum_probs=394.3
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 709 RLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE--LKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+++++.+++++++.++..++....+++++++++........ .......+...+++++++..++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677778788888888888888788888888888865321110 0001111222344456677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++.++.+.+..++..++.+++.++++++++|+++
T Consensus 86 ~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 86 DATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 867 LIILVMLPLIGV-SGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 867 l~~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
+++++++|++++ ..+++.++.++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..+++.+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888887655 3466677778888888899999999999999999999999999999999999999999999999888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTM-TAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1178)
.+...++..++..+..++++++|+++ .+|.+++|.++++..+... ...++..+......++++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888888888888888888999988 4889999999998877644 345777788888899999999999999998776
Q ss_pred CCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 001041 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1025 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I 1104 (1178)
+.+..+. ....+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 323 ~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i 399 (574)
T PRK11160 323 EVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILL 399 (574)
T ss_pred CCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 5322111 1112245789999999999753 346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|+++++.+++|++|++|||||+||+|||+|||++++ ++++|||+++|++.+++++||++ |+||||.|+
T Consensus 400 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vg 470 (574)
T PRK11160 400 NGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAA-PNASDEALIEVLQQVGLEKLLED-DKGLNAWLG 470 (574)
T ss_pred CCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCC-CccCHHHHHHHHHHcCCHHHHcC-ccccCchhc
Confidence 999999999999999999999999999999999999996 47999999999999999999999 999999875
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=572.64 Aligned_cols=530 Identities=14% Similarity=0.122 Sum_probs=415.1
Q ss_pred HHHHhHhhchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSAD----TALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASF 121 (1178)
Q Consensus 46 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 121 (1178)
+.++++|+.+.. +..+++.+++.++..++....+++.+.+++..... +...+......+.+.++++.++..+..|
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~-~~~~f~~~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR-SPRNFAWILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666665543 23566666677777777888888999999876532 1112222222223333344445555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 122 LQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 122 ~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
+..++......++...+|..++++....++.+||+ ++|++.+|+++|++.+.+.+...+..++..++.+++..+.++.
T Consensus 158 ~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 158 LLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677777888888888777778888874 6899999999999999999999999999999888877776665
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Q 001041 202 -KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSG 280 (1178)
Q Consensus 202 -~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~ 280 (1178)
.+|.+++++++.+|+.+++..++.+...+...+.++..++..+.+.|.++|+++||+|+.|+.+.+++.+...+..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-h----cCCCHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 001041 281 VQEGLAAGIGLGMVMLIVF--CSYALSVWYGGKLIL-E----EGYNGGQVVNVMVA----VLTGSMSLGEASPCLSAFGA 349 (1178)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~-~----~~~~~~~~~~~~~~----~l~~~~~l~~~~~~~~~~~~ 349 (1178)
.+...+.+....+..++.. ...+++++.|..... . +.++.+.++..+.. +.....++..+......+..
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766666655544444432 122223333332332 2 56777765542222 23445677778888889999
Q ss_pred HHHHHHHHHHHhccCCCCCcC-------CC--CC-------------cccCCCcccEEEEeEEEECCCCCCCccccceeE
Q 001041 350 GQAAAFKMFETINRKPEIDAY-------DT--KG-------------KILDDIRGDIELRDVYFSYPARPNEQIFSGFSI 407 (1178)
Q Consensus 350 ~~~~~~r~~~~~~~~~~~~~~-------~~--~~-------------~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l 407 (1178)
+..+..|++++++.+++.... .. .. .......+.|+++|++|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 999999999998754332100 00 00 001112356999999999974 2469999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC---
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--- 484 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~--- 484 (1178)
++++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999875 56899999999999999999999874
Q ss_pred ----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHH
Q 001041 485 ----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1178)
Q Consensus 485 ----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1178)
+..++++++++++.+++++++.. |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 33567889999999999998877 999999876 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 561 VQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 561 i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+.+.+++. ++|+|+||||++.+..||+|++|++
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99998773 8999999999999999999999973
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-59 Score=586.98 Aligned_cols=462 Identities=23% Similarity=0.327 Sum_probs=405.8
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
.++++.+.+++++.+...++++++..++....|+++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556677777777777777777778888888888887653221 111222333444455667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++| + ++++|++++|+ +|++.+++++...+...+..++.+++.++++++++|+++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 288 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999998 5 47899999999 799999999999988888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
++.++.+|+.+++.+++.++.++..++..+..++..+.+.|+++|+++||+|+.|+.+.++|++..++..+...+.....
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.....+...+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999887653
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
+... .....+...|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 449 ~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 449 PEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 2211 111122345789999999999743 35799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++++++|++|++|||||+||+|||||||++++ ++++|||+++|++.++++|||++||+||||.++
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~ 596 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGA-PYADDEEILRAAELAGVTEFVRRHPDGLDMQIG 596 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCC-CCCCHHHHHHHHHHcChHHHHHhCcccccceec
Confidence 9999999999999999999999999999999999995 479999999999999999999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-59 Score=588.42 Aligned_cols=465 Identities=17% Similarity=0.170 Sum_probs=407.3
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
.+++++.+.+++++.+...++++++..++....|+++..++|....... ......+.+.++++.++..++.+++.++.
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566667667777777777777777788888888887653221 11122234445555666778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++|.++|+|++++|++||+ ++++|++++|+++| +.+++++...+..++.+++.+++.++++++++|++
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 295 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVL 295 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 58999999999988 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++.+|+.+++.++..++.++..++.++..++..+.+.|+++|+++||++|.|+.+.++|.+...+..+...+....
T Consensus 296 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 375 (710)
T TIGR03796 296 TLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVL 375 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888899999999999999999999999999999999999999999988888888
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
......+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+......++.+..+.+|+.++++.+++
T Consensus 376 ~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 455 (710)
T TIGR03796 376 TQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999987765
Q ss_pred CCCCCC---C-CCcc-cCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 001041 1026 IDPSDE---S-GTIL-EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1178)
Q Consensus 1026 ~~~~~~---~-~~~~-~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G 1100 (1178)
.+.... . ...+ +...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 456 PLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred cccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 432110 0 0111 2346789999999999853 35799999999999999999999999999999999999999999
Q ss_pred eEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1101 ~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|++||+|+++++.+++|++|++|||||+||+|||||||+++. ++++|+++++|++.++++|||.+||+||||.++
T Consensus 535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~ 610 (710)
T TIGR03796 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELA 610 (710)
T ss_pred EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceec
Confidence 9999999999999999999999999999999999999999985 479999999999999999999999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-61 Score=521.87 Aligned_cols=446 Identities=22% Similarity=0.297 Sum_probs=370.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 001041 721 ILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGA------GSFLLSPAQSYFFAVAGNKLIQ 794 (1178)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 794 (1178)
.+.+.++.++.-+.....+.+..++++....+ .... ......++++.+ .+.++.-++.++...+.+...+
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap-~~~~---~~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR 292 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAP-DTFQ---YSLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTR 292 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCc-chhh---HHHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHH
Confidence 34444444444455555566666666665532 1111 111222222222 2345666777777888999999
Q ss_pred HHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Q 001041 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVML 873 (1178)
Q Consensus 795 ~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~-~~~~~~l~l~~l~~~ 873 (1178)
.+-.++|+|+..+++.|+- .+++|+++.-+.+..+.+. ++...+.++...+.-+.+++++. ...+|+++++++++.
T Consensus 293 ~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m 369 (790)
T KOG0056|consen 293 EIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMM 369 (790)
T ss_pred HHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHH
Confidence 9999999999999999998 4889999999998888887 77777777777777777777654 457999999999988
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHH
Q 001041 874 PLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1178)
Q Consensus 874 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1178)
.+.+...........+..|++..+..+..+...+++-+.+|||-||+|+++.++|.+...++.+..++.........-..
T Consensus 370 ~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Q 449 (790)
T KOG0056|consen 370 LLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQ 449 (790)
T ss_pred HHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88887777777777778888888888899999999999999999999999999999999999998887665555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 001041 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESG 1033 (1178)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~ 1033 (1178)
..+..+..++.-.+.++++..+..|+|+++.|.+|+..+..|+...+.....+|+...-+|+++++++++++..+.+. .
T Consensus 450 n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~-a 528 (790)
T KOG0056|consen 450 NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPG-A 528 (790)
T ss_pred hhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCC-C
Confidence 455555555555667778889999999999999999999999999999999999999999999999998888754432 2
Q ss_pred CcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 001041 1034 TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1178)
Q Consensus 1034 ~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~ 1113 (1178)
++....+|.|+|+||+|+|+ |++|||+||||+++||+++|+|||||+|||||+++|+||||.++|+|+|||+||+++.
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt 606 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVT 606 (790)
T ss_pred CCccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHH
Confidence 33444689999999999996 4678999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1114 LKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1114 l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
.++||++||+||||.+||++||.+||+||++ .|+||||.+|||+|++||-|.++|+||+|+||
T Consensus 607 ~~SLRs~IGVVPQDtvLFNdTI~yNIryak~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VG 669 (790)
T KOG0056|consen 607 QSSLRSSIGVVPQDTVLFNDTILYNIRYAKP-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVG 669 (790)
T ss_pred HHHHHHhcCcccCcceeecceeeeheeecCC-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhh
Confidence 9999999999999999999999999999975 89999999999999999999999999999986
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-58 Score=560.86 Aligned_cols=452 Identities=20% Similarity=0.212 Sum_probs=391.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 718 IPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIR 797 (1178)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 797 (1178)
++.+..+++++++.+++.+..++++++++|........ ......+.++++++.++..++.+++.+..+..+.++..++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 2 RRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777788888899999999876421111 12233445555666777888899999999999999999999
Q ss_pred HHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001041 798 SMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIG 877 (1178)
Q Consensus 798 ~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~ 877 (1178)
.++|++++++|..||+ ++++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+++++++.+|+..
T Consensus 81 ~~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~ 158 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIP 158 (529)
T ss_pred HHHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999 58999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHH
Q 001041 878 VSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLL 957 (1178)
Q Consensus 878 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1178)
++.+...++.++..++.++..++..+.+.|+++|+++||+|+.|+++.++|++..++..+...+..+.......+..++.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02857 159 IFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFA 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888999999999999999999999999999999999999999888887777766666666666
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccc
Q 001041 958 FAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILE 1037 (1178)
Q Consensus 958 ~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 1037 (1178)
.+...+++.++++.+.+|.+|+|.++++..+...+..|+..+......++++..+.+|+.++++.+++..+. ...+.
T Consensus 239 ~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~---~~~~~ 315 (529)
T TIGR02857 239 TLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGK---APVTA 315 (529)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCC---cCCCC
Confidence 666666566677777799999999999999999999999999999999999999999999999854322111 11111
Q ss_pred CccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 001041 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1038 ~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L 1117 (1178)
+..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123679999999999854 3479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|++|++|||||++|+|||||||++|. ++++|+++++|++.++++|||++||+||||.++
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~ 453 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLAR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIG 453 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhc
Confidence 99999999999999999999999985 478999999999999999999999999999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-57 Score=573.29 Aligned_cols=462 Identities=21% Similarity=0.285 Sum_probs=404.7
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.++++..+...++++++..++....++++..++|....... ......+.++++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666666667777777777788888888887753221 112233344455566677888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
..+.++..++|.++|+|++++|++||+ ++++|++++|+ +|++.+++++...+..++..++.+++.++++++++|+++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 58999999999 699999999998888888888877778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++.+|+++++.++..++.++..++..+..++.++.+.|+++|+++||+||.|+.+.++|++..++..+...+..+..
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888889999999999999999999999999999999999999999999988888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999877653
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
+.. .....+...|.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 442 ~~~--~~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 442 RSA--GLAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred cCC--CCCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 221 111122345789999999999743 34699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||+||+|||||||+++. ++++++++++|++.++++|+|++||+||||.++
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~-~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~ 588 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCN-PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVG 588 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCC-CCCCHHHHHHHHHHcChHHHHHhCcCccCcEec
Confidence 9999999999999999999999999999999999985 479999999999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-57 Score=561.32 Aligned_cols=462 Identities=28% Similarity=0.399 Sum_probs=400.0
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1178)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1178)
++++.+.+++++.++..+++.++..+.....++++..+++....... ........+.++++.++..++.+++.++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 91 (582)
T PRK11176 14 RRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSVLKWMPLVVIGLMILRGITSFISSYCISW 91 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666677778877776553211 1111122223344566677888888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1178)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l 867 (1178)
.+.++..++|.++++++++.|.++|+ +..+|++++|+++|++.+++.+.+.+..++.+++.+++.++++++++|++++
T Consensus 92 ~~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 169 (582)
T PRK11176 92 VSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSL 169 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 5889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 001041 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1178)
Q Consensus 868 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1178)
++++++|+.+++.+...+++++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+......
T Consensus 170 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T PRK11176 170 ILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888999999988899999999999999999999999999999999999999999999999998888887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCC
Q 001041 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1178)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 1027 (1178)
....+..++..+...+++++|++++.+|.+++|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 329 (582)
T PRK11176 250 ISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998665422
Q ss_pred CCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc
Q 001041 1028 PSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1178)
Q Consensus 1028 ~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~ 1107 (1178)
... ...++..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 330 ~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 330 EGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 111 1122334679999999999753 357999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1108 dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+++++.+++|++|++|||||+||+|||||||++|++++++|+|+++|++.+++++||++||+||||.++
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig 475 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIG 475 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeC
Confidence 9999999999999999999999999999999999965458999999999999999999999999999875
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-57 Score=556.64 Aligned_cols=460 Identities=27% Similarity=0.411 Sum_probs=409.9
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 710 LAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAG 789 (1178)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1178)
++.+.++.++.+++++++.++.+++.+..++++..+++....... ......+..+++++.++..++.+++.++.+..+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667778888888888888888888888888886553221 111222344556667777888899999999999
Q ss_pred HHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 001041 790 NKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALII 869 (1178)
Q Consensus 790 ~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~ 869 (1178)
.++...+|..+++++++.|.++|+ +.++|++++|+++|++.+++++.+.+..++.+++.+++.++++++++|++++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFD--RQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999999 588999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhH
Q 001041 870 LVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGG 949 (1178)
Q Consensus 870 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 949 (1178)
++..|+.+++.++..++.++..++.++..++..+.+.|.++|+++||+++.++++.++|.+..++..+...+.....+..
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCC
Q 001041 950 FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPS 1029 (1178)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~ 1029 (1178)
..+...+..+..++++++|++++.+|.+|+|.++++..+...+..|+..+......++++..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999876543211
Q ss_pred CCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1030 ~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
. ....+..++|+|+||+|+|+++ +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 321 ~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 321 T---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred C---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 1 1112235689999999999754 35799999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1110 QKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1110 ~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
++++.+++|++|++|||||+||+|||||||.++++++++|+|+++|++.+++++++.+||+||||+|+
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~ 464 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIG 464 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceec
Confidence 99999999999999999999999999999999863379999999999999999999999999999875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-57 Score=557.53 Aligned_cols=459 Identities=21% Similarity=0.261 Sum_probs=383.9
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1178)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1178)
+++..+.+++++.+...+++.++..++....++++..++|...............++++++++.++..++.+++.+..+.
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (592)
T PRK10790 12 KRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNR 91 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555667777777777777778888888889998887653211100011112233444455677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1178)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l 867 (1178)
.+.+...++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++.++..+++.++++++++|++++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 001041 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1178)
Q Consensus 868 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1178)
++++++|+.++......++.++..++.++..++.+..+.|.++|+++||+|+.|+++.++|.+..++..+...+.....+
T Consensus 170 i~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (592)
T PRK10790 170 VAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDG 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888888888888888888999999999999999999999999999999998888887776666554
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 948 GG-FGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 948 ~~-~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.. ..+..++..+...+++++++. +..|.+++|.++++..+...+..|+..+......++++..+.+|+.++++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 250 FLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 33 223333333332333333333 5789999999999999999999999999999999999999999999999865432
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
.. . . ..+...++|+|+||+|+|++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 329 ~~-~--~-~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 329 YG-N--D-DRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred CC-C--C-ccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 11 1 1 11223578999999999974 34699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||+||+|||||||++|+ +++|+|+++|++.++++++|.+||+||||.++
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~--~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~ 471 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR--DISEEQVWQALETVQLAELARSLPDGLYTPLG 471 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC--CCCHHHHHHHHHHcCcHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999874
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=544.73 Aligned_cols=465 Identities=29% Similarity=0.441 Sum_probs=398.8
Q ss_pred HhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAV 787 (1178)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1178)
+.++.+.++.++.+.+.+++.++..++....++++..++|..+.... ......+..+++++.++..++.+++.++...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (576)
T TIGR02204 7 AALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTW 84 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667777777777888888888889988887543211 1112223333444555566777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 001041 788 AGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLAL 867 (1178)
Q Consensus 788 ~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l 867 (1178)
.+.++..++|..++++++++|.++|+ +.++|++++|+++|++.+++++...+..++..++.+++.++++++++|++++
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 162 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFD--KNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTS 162 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHc--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHh
Q 001041 868 IILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947 (1178)
Q Consensus 868 ~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 947 (1178)
++++.+|+.+++.+++.++.++..++.++..++..+.+.|.++|+++||+|+.|+++.++|++..++..+...+......
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (576)
T TIGR02204 163 LVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRA 242 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999999999999999999999999999999999999999988888777777666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCC
Q 001041 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID 1027 (1178)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 1027 (1178)
....+..++.....++++++|++++.+|.+|+|.++++..+...+..|+..+......++.+..+.+|+.++++.+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 322 (576)
T TIGR02204 243 LLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIK 322 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 66666666666667778889999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc
Q 001041 1028 PSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1178)
Q Consensus 1028 ~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~ 1107 (1178)
..........+..+.|+|+||+|+|++++++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 323 ~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 323 APAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred CCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 11111111112346799999999998543357999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1108 EIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1108 dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+++++.+++|++|++|||||++|+|||||||.+|. ++++|++++++++.+++++++.++|+|+||+++
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~ 471 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLG 471 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccccHHHHHhcCC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeC
Confidence 999999999999999999999999999999999985 468999999999999999999999999999875
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=540.89 Aligned_cols=460 Identities=21% Similarity=0.265 Sum_probs=394.5
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.+++++.++.++++.++..++....+++++.++|....... ...+.+.++++.++..+..++..++..
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667778888888888888888888899999999987653211 111222222333444555556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
....++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+.+.+..++..++.+++.+++++.++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~--~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQ--QRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888999999999999999 588999999999999999999999999988888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++++|+.+++...+.++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.+++.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888889999999999999999999999999999999999999888888877777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
+....+...+..+..++++++|++++.+|.+++|.++++..++..+..|+..+.+....++.+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 77777777777777788889999999999999999999999999999999999999999999999999999999866543
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
++... ....+...+.|+|+||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 320 EEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred cCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 21111 11112235679999999999742 3599999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|+++++|||||++|++||+|||+++. ++++|+|+++|++.+++++++.++|+|+||.++
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~ 466 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGR-EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG 466 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhccccccchhc
Confidence 9999999999999999999999999999999999985 478999999999999999999999999999864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-55 Score=498.85 Aligned_cols=446 Identities=22% Similarity=0.262 Sum_probs=395.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 724 GTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEK 803 (1178)
Q Consensus 724 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ 803 (1178)
..++..+.+++.....+++...++..+.... ......++..+++..+++.++.+.+......++.++..+||.+++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL--FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666667777777776654321 23344566667777888999999999999999999999999999999
Q ss_pred HHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 001041 804 VIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883 (1178)
Q Consensus 804 ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~ 883 (1178)
+.+++..|-. ..|+|+..+.++..++.++.++...++.++.+.+.++..++.+++.+|.-++++++.+|++.++++.+
T Consensus 83 l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 58999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHH
Q 001041 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAA 963 (1178)
Q Consensus 884 ~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1178)
....++.+++.-.....+++++.|.++|+.|+|+|++.+...++..+..+++++..++..+..-....+..++.++..++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888888888888888
Q ss_pred HHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCcccc
Q 001041 964 SFYAGARLVED-GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE 1042 (1178)
Q Consensus 964 ~~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~ 1042 (1178)
+..+.+..... |.+++...+.++....-++.|+..+.+.++.-..+.++.+.++.+++.|.+..+.............+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 77666666666 89999999999999999999999999999999999999999999998776543322111111112345
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++|++|+|+++ +++++|+||+++||+++||||+||||||||+++|+||.+|++|+|++||+|+++++.++||++++
T Consensus 321 i~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 6667999999864 37999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|||+|+||+|||||||+++++ ++|||||++|++.+++.||+.. |+|+||+++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~-~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ig 451 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARP-DASDEEIIAALDQAGLLEFVPK-PDGLDTVIG 451 (559)
T ss_pred eeCCCCccccccHHHHhhccCC-cCCHHHHHHHHHHhcHHHhhcC-CCcccchhc
Confidence 9999999999999999999964 7999999999999999999999 999999985
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=540.40 Aligned_cols=438 Identities=21% Similarity=0.338 Sum_probs=379.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 001041 732 GVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSW 811 (1178)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~f 811 (1178)
.++....+++++.++|........ ......|+++++++.++..++.++..++.+..+.+...++|.++|+|++++|++|
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~ 86 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEF 86 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 334455677778888865432111 1122334455555566677788888889999999999999999999999999999
Q ss_pred ccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001041 812 FDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FTASWQLALIILVMLPLIGVSGYTQMKFMKGF 890 (1178)
Q Consensus 812 Fd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~-~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~ 890 (1178)
|+ ++++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|++++++++++|+.+++.+.+.++.++.
T Consensus 87 ~~--~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~ 164 (569)
T PRK10789 87 YL--RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHER 164 (569)
T ss_pred Hc--CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 5899999999999999999888888888888877766666655 58999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 001041 891 SADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGAR 970 (1178)
Q Consensus 891 ~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 970 (1178)
.++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+.....+...++...+..+..++++++|++
T Consensus 165 ~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 244 (569)
T PRK10789 165 FKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSW 244 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999888888887777777777777777788899999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEE
Q 001041 971 LVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSF 1050 (1178)
Q Consensus 971 l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf 1050 (1178)
++.+|.+|+|.++++..+...+..|+..+.+....++.+..+.+|+.++++.+++.+... ...++..++|+|+||+|
T Consensus 245 lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~ 321 (569)
T PRK10789 245 MVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQF 321 (569)
T ss_pred HHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEE
Confidence 999999999999999999999999999999999999999999999999998765432111 11122356899999999
Q ss_pred eCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccccc
Q 001041 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVL 1130 (1178)
Q Consensus 1051 ~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~L 1130 (1178)
+|+.+ +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|++|||||+|
T Consensus 322 ~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l 400 (569)
T PRK10789 322 TYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL 400 (569)
T ss_pred ECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee
Confidence 99743 35799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1131 FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1131 F~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|||||||++|+ ++++|+++++|++.++++++|.+||+||||.++
T Consensus 401 f~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~ 446 (569)
T PRK10789 401 FSDTVANNIALGR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVG 446 (569)
T ss_pred ccccHHHHHhcCC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceec
Confidence 9999999999995 478999999999999999999999999999874
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=493.60 Aligned_cols=444 Identities=22% Similarity=0.302 Sum_probs=370.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc--CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 725 TIAAMANGVILPIYGLLISSVIETFF--KPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFE 802 (1178)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 802 (1178)
+.+.+.+-......+.++...++..- ...+.........+..|.+..+.+.+|..++.+.+.++.+++.++.-.++|+
T Consensus 36 l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~ 115 (591)
T KOG0057|consen 36 LGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFR 115 (591)
T ss_pred HHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345566667777887777652 1111011111234566777888899999999999999999999999999999
Q ss_pred HHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 803 KVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLI-IAFTASWQLALIILVMLPLIGVSGY 881 (1178)
Q Consensus 803 ~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii-~~~~~~~~l~l~~l~~~pl~~~~~~ 881 (1178)
+++.++++||. +..+|.|.+++.+-...|..++...+..++..++-+..... +-.-..+..+++.+..+..+..+..
T Consensus 116 ~~~~ld~~~~~--~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti 193 (591)
T KOG0057|consen 116 HLMSLDLSFFL--SRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTI 193 (591)
T ss_pred HHHhhhHHhhc--CCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEE
Confidence 99999999999 47899999999999999999999998888888776655553 3344677777777777777777777
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHH
Q 001041 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY 961 (1178)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1178)
...++..+..+++..+...++..+.|++.|..+||+||.|+++.++|+..+.++.+...+.....+...-....+.....
T Consensus 194 ~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~ 273 (591)
T KOG0057|consen 194 VVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVAL 273 (591)
T ss_pred eehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHH
Confidence 77777778888899999999999999999999999999999999999999999999888877766665555555555666
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccc
Q 001041 962 AASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKG 1041 (1178)
Q Consensus 962 ~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g 1041 (1178)
+.+.+.|..-+.+|.+|+|+++.+..++..+..|+..+.....++.++..-+..++...+....+.. .+.+....+|
T Consensus 274 ~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~---~~~~i~~~~~ 350 (591)
T KOG0057|consen 274 TFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQE---AALPIELFGG 350 (591)
T ss_pred HHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhh---ccCCcccCCC
Confidence 6677778777889999999999999999999999999999988888888877777665443322211 1112233467
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+|+||+|+|+ |+++||+|+||+|++||||||||++||||||++++|+||+| ++|+|+|||+||++++++++|+.|
T Consensus 351 ~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~I 427 (591)
T KOG0057|consen 351 SIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSI 427 (591)
T ss_pred cEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhe
Confidence 899999999997 35569999999999999999999999999999999999999 999999999999999999999999
Q ss_pred cccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1122 GLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+||||..||++||.+||.||++ .+|+||+.++||+|++||-|.+||+||+|.|+
T Consensus 428 g~VPQd~~LFndTIl~NI~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 428 GVVPQDSVLFNDTILYNIKYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eEeCCcccccchhHHHHhhcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHh
Confidence 99999999999999999999964 89999999999999999999999999999986
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=538.04 Aligned_cols=460 Identities=22% Similarity=0.273 Sum_probs=389.7
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
++++..+.++++..+.+.+++.++..++....++++..++|...... ......++++++.++..+..++..++..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-----DIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666677777777777777777888888888888765321 1111223333333444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
....++..+++.++|+|++++|..+|+ +.++|++++|+++|++.+...+...+..++..++.+++.++++++++|+++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666667778999999999999999 589999999999999999999888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++++|+.+++.++..++.++..++.++..++..+.+.|.++|+++||+|+.++.+.++|.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888888888888888999999999999999999999999999999999999999888887777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
.....+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998865542
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
+... .....++..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|+|||
T Consensus 320 ~~~~-~~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g 396 (588)
T PRK13657 320 RDPP-GAIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396 (588)
T ss_pred CCCC-CCCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 2111 111112234679999999999742 4699999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||+||+|||||||++++ ++++|+|+++|++.++++++|.+||+|+||.++
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~-~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~ 466 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR-PDATDEEMRAAAERAQAHDFIERKPDGYDTVVG 466 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCC-CCCCHHHHHHHHHHhCHHHHHHhCcccccchhc
Confidence 9999999999999999999999999999999999995 478999999999999999999999999999874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-54 Score=478.72 Aligned_cols=452 Identities=21% Similarity=0.191 Sum_probs=362.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 717 EIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA--LIYLALGAGSFLLSPAQSYFFAVAGNKLIQ 794 (1178)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1178)
+++.+.++++++++..........+-++++......+.. ....+++ ...=.+++.+.+..|...+..|.+..++..
T Consensus 14 ~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~--~~f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~ 91 (573)
T COG4987 14 HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA--YIFNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLS 91 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 555666666666655544444444444444432211110 1111111 122246788889999999999999999999
Q ss_pred HHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001041 795 RIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1178)
Q Consensus 795 ~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~p 874 (1178)
++|.++|+++...+..-.. +.++||++||++.|++.+|+.+-..+.+.+..++..++..+.+.+++|.+++.+..++.
T Consensus 92 ~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll 169 (573)
T COG4987 92 ALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILL 169 (573)
T ss_pred HHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999998888 58899999999999999999999999999999999999999999999999887765555
Q ss_pred HH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHH
Q 001041 875 LI-GVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGAS 953 (1178)
Q Consensus 875 l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1178)
+. +++...+.++-++..++.+...+...+++.|.+.|....+.||+++.+.+.+.+..+.+.+...+...+......+.
T Consensus 170 ~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~ 249 (573)
T COG4987 170 LLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAIL 249 (573)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 45566777777888889999999999999999999999999999999999999999999998888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 001041 954 FFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSS-SFSSDSNKAKSAAASIFAIIDRESKIDPSDES 1032 (1178)
Q Consensus 954 ~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~ 1032 (1178)
.++..+..+..+.+.+..+..|..+.-....+.+.......++.-+. ..+....+...|+.|+.++++.+++...+. .
T Consensus 250 ~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~-~ 328 (573)
T COG4987 250 LLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD-E 328 (573)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCc-c
Confidence 77766666644444555566666653333333333233344444444 566788999999999999999887765431 1
Q ss_pred CCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1033 GTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1033 ~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
..+.. .. .++++||+|+||++ +++||+|+||++++||||||||||||||||++++|.|-|||++|+|+++|.|++.+
T Consensus 329 ~~~~~-~~-~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l 405 (573)
T COG4987 329 QTATT-GQ-ALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASL 405 (573)
T ss_pred ccCCc-cc-eeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhC
Confidence 11111 12 79999999999864 55799999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1113 ~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+.+++|+.|++++|.++||+||+||||+++++ ++||||+|+|++++++++++++.|+||||.++
T Consensus 406 ~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lg 469 (573)
T COG4987 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLG 469 (573)
T ss_pred ChhhHHHHHhhhccchHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhc
Confidence 99999999999999999999999999999964 89999999999999999999999999999885
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=522.07 Aligned_cols=453 Identities=15% Similarity=0.123 Sum_probs=372.3
Q ss_pred hHhhhhhcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNK-PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 707 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
.++++.+.+ ++++.++++++++++.++.....+++++.+++...... .. ....++++.++..++.++..++.
T Consensus 5 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~ 77 (555)
T TIGR01194 5 IGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLG----QG---SLFSFGGLCLLALLFRIGADIFP 77 (555)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----ch---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667 88888888888888888877777788877765321100 00 11123344556667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
+..+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++.. +..++..++.++++++++++++|.+
T Consensus 78 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L 154 (555)
T TIGR01194 78 AYAGMHIIANLRIALCEKILGAPIEEID--RRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPM 154 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHH--hcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 589999999999999999999864 7788888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchH--HHHHHHHHHhhhHHHhhhHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEE--KVMQLYKKKCEAPMKTGIRQG 943 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~--~~~~~~~~~~~~~~~~~~~~~ 943 (1178)
++++++++|+.+++..+..++.++..++.++..++.++.+.|.+.|+++||+|+.++ .+.++|.+..++..+...+..
T Consensus 155 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T TIGR01194 155 FAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEI 234 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999988888877777777788888888999999999999999999999954 567888888888888777666
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCC
Q 001041 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRE 1023 (1178)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 1023 (1178)
.......++..++..+...+.++++++. |.+|+|.++++..++..+..|+..+.+....++++..+.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~ 311 (555)
T TIGR01194 235 LIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERF 311 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5555444444444444444445555443 7899999999999999999999999999999999999999999997642
Q ss_pred CCCCCC---CCCCC----cccCccccEEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1024 SKIDPS---DESGT----ILEDVKGEIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1024 ~~~~~~---~~~~~----~~~~~~g~I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.+.++. ++... .+....++|+|+||+|+|++.+ ++++|+|+||+|++||++|||||||||||||+++|+|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 312 NEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred ccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 211110 00000 1112246899999999997431 23699999999999999999999999999999999999
Q ss_pred cCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccc
Q 001041 1095 YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTS 1174 (1178)
Q Consensus 1095 y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT 1174 (1178)
|+|++|+|++||+|+++++.+++|+++++|+|||+||++|+++|+ . +++++++++++++.++++++++++|+||||
T Consensus 392 ~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~--~--~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t 467 (555)
T TIGR01194 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE--G--EHASLDNAQQYLQRLEIADKVKIEDGGFST 467 (555)
T ss_pred CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc--c--cchhHHHHHHHHHHcCCchhhcccccccCC
Confidence 999999999999999999999999999999999999999999996 2 368999999999999999999999999998
Q ss_pred cc
Q 001041 1175 RL 1176 (1178)
Q Consensus 1175 ~v 1176 (1178)
..
T Consensus 468 ~~ 469 (555)
T TIGR01194 468 TT 469 (555)
T ss_pred cc
Confidence 63
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-53 Score=517.09 Aligned_cols=446 Identities=16% Similarity=0.193 Sum_probs=379.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 716 PEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQR 795 (1178)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1178)
++++.++..+++.++..++....++++..++|....... ......+.++++++.++..++.+++.++.+..+.++..+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (544)
T TIGR01842 3 KNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGA 80 (544)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677777777777888889999987653211 112233444555566677788889999999999999999
Q ss_pred HHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 001041 796 IRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGD-ALARIVQNISTAAAGLIIAFTASWQLALIILVMLP 874 (1178)
Q Consensus 796 lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~-~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~p 874 (1178)
+|.++|+|++++|+.. .|...+++++|++.+++.+.. .+..++..++.++ .++++++++|++++++++.+|
T Consensus 81 lr~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~ 152 (544)
T TIGR01842 81 LNQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAV 152 (544)
T ss_pred HHHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999843 256789999999999998887 4555555555444 446788999999999998888
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHH
Q 001041 875 LIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASF 954 (1178)
Q Consensus 875 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (1178)
+++++.++..++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|++..++..+...+.....+....+..
T Consensus 153 l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (544)
T TIGR01842 153 VLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSK 232 (544)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777778888888888888999999999999999999999999999999999999999888888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 001041 955 FLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGT 1034 (1178)
Q Consensus 955 ~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~ 1034 (1178)
.+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+......++.+..+.+|+.++++.+++.++. .
T Consensus 233 ~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~ 308 (544)
T TIGR01842 233 YFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----M 308 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----C
Confidence 777777788889999999999999999999999999999999999999999999999999999999866543211 1
Q ss_pred cccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh
Q 001041 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114 (1178)
Q Consensus 1035 ~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l 1114 (1178)
..++..+.|+|+||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.
T Consensus 309 ~~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 309 PLPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred CCCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 112234679999999999743 3479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1115 ~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+++|+++++|||||++|++||||||++++ ++++++++++|++.+++++++++||+|+||.++
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~ 449 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFG-ENADPEKIIEAAKLAGVHELILRLPDGYDTVIG 449 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCccccccccC
Confidence 99999999999999999999999999874 468999999999999999999999999999874
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=460.51 Aligned_cols=391 Identities=26% Similarity=0.344 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 001041 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIA-FT 860 (1178)
Q Consensus 782 ~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~-~~ 860 (1178)
..++..+++.+.+.+--+.|.|++++++.|+- ++.+|.+...+..-...|+..+...+..++..++-+....+++ ..
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl--~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~ 80 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHL--ERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRV 80 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhh--hcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 34566778888888999999999999999999 5789999999999999999999999999888888777666655 45
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhh
Q 001041 861 ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGI 940 (1178)
Q Consensus 861 ~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~ 940 (1178)
++|+.+++.++++.+++++.....-......+++.++.+++++...+++-+-+|+|.||.|+++..+|.+.++.+.++..
T Consensus 81 ~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~ 160 (497)
T COG5265 81 YGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAI 160 (497)
T ss_pred cccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHH
Confidence 79999999999999998888777777777888999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHh
Q 001041 941 RQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAII 1020 (1178)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 1020 (1178)
+.....+........+...........+...+..|.+|+|+++....++.....|+..++....++.++...++++++++
T Consensus 161 k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl 240 (497)
T COG5265 161 KVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLL 240 (497)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhh
Confidence 87766665555555556666666777888889999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 001041 1021 DRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1178)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G 1100 (1178)
+.+.+....+..++..+...|.|.|+||+|.|. |..|+|+|+||++++|+++||||+||+|||||.++|+||||+++|
T Consensus 241 ~~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 241 DVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred ccchhhccCCCCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 988776543332222224568999999999996 456899999999999999999999999999999999999999999
Q ss_pred eEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1101 ~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|.|||+||+++..++||+.||+||||.+||++||..||+||++ ++|+||+++|+|.|++|+||++||+||||.|+
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~-~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vg 394 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRP-DATAEEVGAAAEAAQIHDFIQSLPEGYDTGVG 394 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCc-cccHHHHHHHHHHhhhhHHHHhCchhhhcccc
Confidence 99999999999999999999999999999999999999999964 89999999999999999999999999999997
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=467.26 Aligned_cols=228 Identities=28% Similarity=0.474 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC----CCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ----AGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~----~G~i~i~g~~~~~~~~~~ 457 (1178)
-++++|++..|..... ..+++|+||++.+||.+||||+|||||||++++|+|++++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 5899999999975532 25999999999999999999999999999999999999887 799999999999988765
Q ss_pred H---h-cceEEEcCCCC-CCc--ccHHHHH----hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 458 I---R-KKIGLVSQEPV-LFT--GSIKDNI----AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ~---r-~~i~~v~Q~~~-l~~--~ti~~ni----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
. | ++|+||+|+|+ .+| -||.+-| ....+...++...++.+ +.+.+ .+|+.... ....+.||||
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~e---lL~~V-gl~~~~~~--~~yPheLSGG 158 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE---LLEQV-GLPDPERR--DRYPHQLSGG 158 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHH---HHHHc-CCCChhhh--ccCCcccCch
Confidence 5 3 57999999995 343 3444443 32221112222222222 22222 33433222 5578999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||+.||+||..+|++||+||||.+||+.++++|.+.|+++. .+.++|+|||++..+.. ||||+||++|+++|.|+
T Consensus 159 ~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 159 MRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 9999999999999999999999999999999999999999876 47899999999999876 99999999999999999
Q ss_pred hhHHhcCCCchHH
Q 001041 604 HSKLVEDPEGAYS 616 (1178)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1178)
.+++++++...|.
T Consensus 239 ~~~i~~~p~hpYT 251 (539)
T COG1123 239 TEEILSNPQHPYT 251 (539)
T ss_pred HHHHHhccCCccc
Confidence 9999887554444
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-51 Score=492.74 Aligned_cols=212 Identities=25% Similarity=0.435 Sum_probs=176.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHH-Hh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~-~r 459 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999986 7999999999998776554 46
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
++++||+|+|.++. .|++||+.++... .+.++... .+.+.++.+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 78999999998875 6999999986431 12222111 122334444 45444566677899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
|||++.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 227 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPA 227 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeeccc
Confidence 999999999999999999999999999999998864 46899999999999865 999999999999876653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=488.83 Aligned_cols=214 Identities=24% Similarity=0.424 Sum_probs=177.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1178)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... +.+
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776543 467
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDA---------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
++||+|++.++. .|++||+.++.... +.++... .+.+.++.+ |+.........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 999999998775 59999998753210 1111111 122333333 454445566678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
+||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999998864 46899999999999865 99999999999987776544
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=497.20 Aligned_cols=221 Identities=28% Similarity=0.436 Sum_probs=177.4
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC----------
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK---------- 451 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~---------- 451 (1178)
.|+++|++++|+... ..++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 599999999996422 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEcCCC--CCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCc---cchhcC
Q 001041 452 EFQLQ---WIR-KKIGLVSQEP--VLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGI---DTLVGE 518 (1178)
Q Consensus 452 ~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~---~t~~~~ 518 (1178)
+.+.. .+| ++|+||+|+| .++. .||+||+.++.. ..+.++..+ .+.+.++.+ |+ +.....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~ 164 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV-----EAKRMLDQV--RIPEAQTILSR 164 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChhhHHhC
Confidence 22222 333 4799999998 4664 699999987521 112222111 112233333 44 234566
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeC
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1178)
...+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++
T Consensus 165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~ 244 (623)
T PRK10261 165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQ 244 (623)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeC
Confidence 7789999999999999999999999999999999999999999999988753 7899999999999865 999999999
Q ss_pred CEEEEecChhHHhcC
Q 001041 596 GKIVEKGTHSKLVED 610 (1178)
Q Consensus 596 G~i~~~g~~~~l~~~ 610 (1178)
|++++.|+++++...
T Consensus 245 G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 245 GEAVETGSVEQIFHA 259 (623)
T ss_pred CeecccCCHHHhhcC
Confidence 999999998887543
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=485.24 Aligned_cols=218 Identities=30% Similarity=0.472 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~ 456 (1178)
.++++|++++|+.. ...++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999632 124699999999999999999999999999999999999986 699999999999877654
Q ss_pred H---Hh-cceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccc---hhcCCCCCC
Q 001041 457 W---IR-KKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDT---LVGEHGTQL 523 (1178)
Q Consensus 457 ~---~r-~~i~~v~Q~~~--l~-~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t---~~~~~g~~l 523 (1178)
. .| ++++|++|+|. ++ ..|+++|+.++. ...+.++... .+.+.++.+ |++. .......+|
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~~L 157 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRV--GIRQAAKRLTDYPHQL 157 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC--CCCChHHHHhhCCccc
Confidence 3 33 57999999985 44 368999986421 1112221111 112223333 3321 245567789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. .++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 158 SgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~ 237 (529)
T PRK15134 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVE 237 (529)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998864 36899999999998865 99999999999998
Q ss_pred ecChhHH
Q 001041 601 KGTHSKL 607 (1178)
Q Consensus 601 ~g~~~~l 607 (1178)
.|+++++
T Consensus 238 ~g~~~~~ 244 (529)
T PRK15134 238 QNRAATL 244 (529)
T ss_pred eCCHHHH
Confidence 8877654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-47 Score=496.83 Aligned_cols=220 Identities=23% Similarity=0.447 Sum_probs=187.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|+++.|++. ++++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 369999999999532 3569999999999999999999999999999999999999999999999999865 45667889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++||||++.+|. .|++|||.|+.. ..+.++.++ .+.+.++.+ |++........+||||||||++||||++
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999998885 699999987421 112222211 122334443 5666667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+|+++|||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||||++|++|++++.|++++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999988778999999999999865 999999999999999999998653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-49 Score=479.41 Aligned_cols=212 Identities=24% Similarity=0.404 Sum_probs=174.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 46999999999999999999999999999999999999999999999999987665444 3568
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
++|++|++.++. .|++||+.++... .+.++.++ .+.+.++.+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 999999998775 6999999986421 11221111 122334443 444444556678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
|||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREV 225 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCc
Confidence 99999999999999999999999999999988764 46899999999999865 999999999999876543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-49 Score=478.92 Aligned_cols=209 Identities=25% Similarity=0.445 Sum_probs=170.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHH-Hhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQW-IRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~-~r~ 460 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|+|.++|.++...+... .|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 689999999963 4699999999999999999999999999999999999987 7999999999998776544 456
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCChHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~~lSgGqkqri~ 532 (1178)
+++||+|+|.++. .|++||+.++... ...++... .+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 7999999998775 6999999876421 11121111 122334443 333222 2345689999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 9999999999999999999999999999999998764 46899999999999865 9999999999987644
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-49 Score=481.58 Aligned_cols=211 Identities=26% Similarity=0.498 Sum_probs=167.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEEC---------------
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLID--------------- 446 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~--------------- 446 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 468999999963 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CCC---HHHHhcceEEEcCC-CCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHH
Q 001041 447 --------GINLK-------EFQ---LQWIRKKIGLVSQE-PVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKF 504 (1178)
Q Consensus 447 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~ 504 (1178)
|.++. ..+ ...+|+.++|++|+ +.+|. .|++||+.++... ...++.+. .+.+.
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~ 152 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDL 152 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHH
Confidence 32221 111 13457789999998 56665 6999999874321 12222111 12233
Q ss_pred HHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcc
Q 001041 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1178)
Q Consensus 505 i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~ 582 (1178)
++.+ |++........+||||||||++||||++.+|++|||||||++||+++.+.+.+.++++.+ ++|+|+|||+++
T Consensus 153 l~~~--gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~ 230 (520)
T TIGR03269 153 IEMV--QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPE 230 (520)
T ss_pred HHHc--CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence 3333 555555666789999999999999999999999999999999999999999999988743 689999999999
Q ss_pred hhhc-cCEEEEEeCCEEEEecCh
Q 001041 583 TVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 583 ~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
.+.. ||+|++|++|++++.|++
T Consensus 231 ~~~~~~d~i~~l~~G~i~~~g~~ 253 (520)
T TIGR03269 231 VIEDLSDKAIWLENGEIKEEGTP 253 (520)
T ss_pred HHHHhcCEEEEEeCCEEeeecCH
Confidence 9865 999999999998765543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=471.57 Aligned_cols=210 Identities=19% Similarity=0.296 Sum_probs=175.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+++.+
T Consensus 3 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i 79 (490)
T PRK10938 3 SLQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLV 79 (490)
T ss_pred eEEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHh
Confidence 3889999999963 3599999999999999999999999999999999999999999999999888777766777789
Q ss_pred EEEcCCCCC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 463 GLVSQEPVL--F-------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 463 ~~v~Q~~~l--~-------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+|++|++.+ + ..|+++|+.++. ...+++.++++.. |++.........||||||||++|
T Consensus 80 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~l 146 (490)
T PRK10938 80 SDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQF-----------GITALLDRRFKYLSTGETRKTLL 146 (490)
T ss_pred ceeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHc-----------CCHhhhhCCcccCCHHHHHHHHH
Confidence 999998742 2 458999987531 1123333333333 44444455667899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 147 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 147 CQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999988643 6899999999998865 9999999999999888766543
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=417.16 Aligned_cols=434 Identities=19% Similarity=0.202 Sum_probs=370.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Q 001041 729 MANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHME 808 (1178)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p 808 (1178)
.+..++....+..+-++.|.+..+..- .......++.+.+.++..++.+++...+.+++.++...|+.++|....++|
T Consensus 33 ~~INiL~L~~~lyMLQVyDRVL~S~s~--~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~ 110 (580)
T COG4618 33 AVINLLALTGPLYMLQVYDRVLPSRSV--PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAP 110 (580)
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhH
Confidence 333444455566666777877654221 112222333444556677888899999999999999999999999998887
Q ss_pred cccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 809 VSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMK 888 (1178)
Q Consensus 809 ~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~ 888 (1178)
..--. .|+=..- -+|.++++.+++..-+..+.+.-..-+.+.++|.++++++++.++...+++.+.++-.+..+
T Consensus 111 l~~~~-----~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~ 184 (580)
T COG4618 111 LLRRG-----SGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATR 184 (580)
T ss_pred HhhcC-----CCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 76533 2322222 24999999999886666666666666677788899999999999999999999998888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 001041 889 GFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAG 968 (1178)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 968 (1178)
+..++..+.....+....-+..|.++|++.|......++|.+....+.....+..-..+.+.+++..+-++....++.+|
T Consensus 185 ~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~G 264 (580)
T COG4618 185 KPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLG 264 (580)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888899999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeee
Q 001041 969 ARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHV 1048 (1178)
Q Consensus 969 ~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nV 1048 (1178)
+|++..|++|.|.+++....+.....|+-.+...+..+..+..+..|+.+++...|...+ .-+.|..+|.+..++|
T Consensus 265 A~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l 340 (580)
T COG4618 265 AWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERL 340 (580)
T ss_pred eeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeee
Confidence 999999999999999999999999999999999999999999999999999987665432 2233445799999999
Q ss_pred EEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1049 sf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
++.=|+. ++|+|+||||+++|||-+|||||||||||||+++|.+.|.|.+|+|++||-|+++++.+.|=++|||.|||.
T Consensus 341 ~~~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdV 419 (580)
T COG4618 341 TAAPPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDV 419 (580)
T ss_pred eecCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccc
Confidence 9976644 568999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccHHHHHh-cCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1129 VLFNDTIRANIA-YGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1129 ~LF~gTIreNI~-~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
.||+|||+|||+ |+ +++++|.|.+|++.|++||.|.+||+||||.|+
T Consensus 420 eLF~GTIaeNIaRf~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG 467 (580)
T COG4618 420 ELFDGTIAENIARFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIG 467 (580)
T ss_pred eecCCcHHHHHHhcc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccC
Confidence 999999999996 54 378999999999999999999999999999986
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=472.35 Aligned_cols=209 Identities=25% Similarity=0.428 Sum_probs=173.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 369999999999999999999999999999999999999999999999999875543 356788
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
|+|++|+|.++. .|++||+.++... .+..+..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 999999998886 5999999986321 11221111 122334444 4444445566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1178)
|++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 9999999999999999999999999999998764 46899999999998865 999999999998753
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=468.78 Aligned_cols=213 Identities=27% Similarity=0.458 Sum_probs=178.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHh-cc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1178)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+....+ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999877766554 56
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
++|++|++.++. .|++||+.++.... .+.++ .+.+.++.+ |++........+||||||||++|||||+.+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~aL~~~ 158 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL--GCQLDLDSSAGSLEVADRQIVEILRGLMRD 158 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc--CCCccccCChhhCCHHHHHHHHHHHHHHcC
Confidence 999999998775 59999999864321 11111 112233333 444445566678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 159 SRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 99999999999999999999999998864 46899999999998865 999999999999988887664
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=431.96 Aligned_cols=236 Identities=28% Similarity=0.507 Sum_probs=219.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
|.|+++|++++|+.. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++ .+|+|.+||+++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999743 3569999999999999999999999999999999999997 78999999999999999999999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+||||+|++|++|+++|+.+.. ..++++++++++.+++.+.+..+|+|+++.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG-KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc-CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999997432 35678899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHH
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|+||||||++||+++.+.+++.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|++|+++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999988778999999999999989999999999999999999999986 5777777753
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=501.37 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=165.6
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~- 473 (1178)
+++|+|+|+.+++||+++|+||||||||||+++|.|.. .|.+|+|.++|.++.+.. ...|+.++||+|++.++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46999999999999999999999999999999999986 468999999999876543 345678999999987774
Q ss_pred ccHHHHHhcCC----C-----CCCHHHHHH-HHHHhcHHHHHHhCCCCccchhcC-CCCCCChHHHHHHHHHHHhccCCC
Q 001041 474 GSIKDNIAYGK----D-----DATTEEIRV-ATELANAAKFIDKLPQGIDTLVGE-HGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 474 ~ti~~ni~~~~----~-----~~~~~~~~~-~~~~~~~~~~i~~~~~g~~t~~~~-~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
.||+||+.|+. | ..+.++..+ ..+. +.+.+ .+.+-.+|.+|+ ....||||||||++||||++.+|+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l-gL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADV--YMATY-GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH--HHHHc-CcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 69999998852 1 122222211 1110 11111 233345677765 456799999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcc-hh-hccCEEEEEeCCEEEEecChhHHh
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS-TV-RNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~-~~-~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++|||||++||+.+...+.+.|+++.+ ++|+|+++|++. .+ ..+|+|++|++|++++.|+++++.
T Consensus 230 vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 230 IQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999998753 789999999974 44 559999999999999999998873
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-48 Score=470.79 Aligned_cols=209 Identities=22% Similarity=0.372 Sum_probs=173.3
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcceEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGL 464 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i~~ 464 (1178)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 3689999963 469999999999999999999999999999999999999999999999999876654 345678999
Q ss_pred EcCCCCCC-cccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 465 VSQEPVLF-TGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 465 v~Q~~~l~-~~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++|++.++ ..|++||+.++... .+.++.++ .+.+.++.+ |++........+||||||||++||||++
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 99999776 56999999976321 12222111 123344444 5555556677889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 218 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPL 218 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecCh
Confidence 9999999999999999999999999998864 46899999999998865 999999999999876654
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=457.16 Aligned_cols=433 Identities=17% Similarity=0.155 Sum_probs=331.4
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 713 LNKPEIPVILAGTIAAMANGVILPI-YGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNK 791 (1178)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1178)
+.+++++.++.++++.++..++... ++++...+++..... .. . ...++++.++..++.+++.++....+.+
T Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~----~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 7 VWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS----LL--V--LPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----ch--H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655544 355666666643210 00 0 1111222233345667888889999999
Q ss_pred HHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001041 792 LIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILV 871 (1178)
Q Consensus 792 ~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~ 871 (1178)
+..++|.+++++++++|++||+ ++++|++++|+++|++.+...+. .++.++.+++.+++.++++++++|++++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999 58999999999999999998776 47788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccch---HHHHHHHHHHhhhHHHhhhHHHHHHhh
Q 001041 872 MLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAE---EKVMQLYKKKCEAPMKTGIRQGMVSGG 948 (1178)
Q Consensus 872 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 948 (1178)
++|+.+++.++..++.++..++.++..++.++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+.......
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLS 234 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 999998888888888888888888999999999999999999995 5544 456788888888887776665554443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCC
Q 001041 949 GFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDP 1028 (1178)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 1028 (1178)
...+...+......+.++++..+ +..+.+.+..+..+......|+..+......++.+..+.+|+.++++.+++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 235 AVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 33333222222222233333322 112333344444444456689999999999999999999999998765432211
Q ss_pred CCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 001041 1029 SDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1178)
Q Consensus 1029 ~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~d 1108 (1178)
.+ .. ..+..+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 312 ~~--~~-~~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 312 PR--PQ-AFPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred cc--cc-ccCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 11 11 1111357999999999974 2469999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccc
Q 001041 1109 IQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1109 I~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~g 1171 (1178)
+++++.+++|++|++|||||+||+||+++| + + ++++++++++++.+++++++.. |+|
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~-~~~~~~~~~~~~~~~l~~~~~~-~~~ 443 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-K-PANPALVEKWLERLKMAHKLEL-EDG 443 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHHHhhccc---c-C-chHHHHHHHHHHHcCCchhhhc-ccc
Confidence 999999999999999999999999999999 4 2 6889999999999999988763 554
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-49 Score=391.20 Aligned_cols=217 Identities=31% Similarity=0.548 Sum_probs=187.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC-CCCHHHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 461 (1178)
.|+++|++.+|+. ..+|+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 4899999999963 46999999999999999999999999999999999999999999999998774 3378899999
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCC---CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKD---DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~---~~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+|+|+|+..|| .-|+-||+.++.- ..+.++ -.+.++++ |+.........+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V-----------GL~~ka~~yP~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV-----------GLADKADAYPAQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc-----------CchhhhhhCccccCcHHHHHHHH
Confidence 99999999999 5899999998631 112222 22233333 44445555668999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
||||..+|+++|+|||||||||+....+.+.++++. .|.|.|+|||.+.+.+. ||||+.||+|+|+|.|+|+++..++
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 999999999999999999999999999999998876 46899999999999987 8999999999999999999999875
Q ss_pred Cc
Q 001041 612 EG 613 (1178)
Q Consensus 612 ~~ 613 (1178)
..
T Consensus 228 ~~ 229 (240)
T COG1126 228 KS 229 (240)
T ss_pred CC
Confidence 43
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=464.73 Aligned_cols=208 Identities=24% Similarity=0.430 Sum_probs=167.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999872 3699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhcHHHHHHhCCCCcc
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDA----------------TTE---EIRVA----------TELANAAKFIDKLPQGID 513 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~~~~g~~ 513 (1178)
|++|++.++. .|++||+.++.... ..+ .+.+. -....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 9999997774 69999998753100 000 00000 0011233344444 454
Q ss_pred chh-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEE
Q 001041 514 TLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA 591 (1178)
Q Consensus 514 t~~-~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~ 591 (1178)
... .....+||||||||++||||++.+|++|||||||++||+++...+.+.|.+ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 322 345678999999999999999999999999999999999999999999875 47899999999999865 99999
Q ss_pred EEeCCEEE-EecChhHHhc
Q 001041 592 VIHRGKIV-EKGTHSKLVE 609 (1178)
Q Consensus 592 ~l~~G~i~-~~g~~~~l~~ 609 (1178)
+|++|+++ +.|+++++++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999994 7888887654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-46 Score=457.47 Aligned_cols=209 Identities=29% Similarity=0.407 Sum_probs=167.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 5899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC----------------CH----------HHHHHHHH-------HhcHHHHHHhC
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDA----------------TT----------EEIRVATE-------LANAAKFIDKL 508 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~----------------~~----------~~~~~~~~-------~~~~~~~i~~~ 508 (1178)
+||+|+|.++. .|++||+.++.... .. .++.+.++ ...+.+.++.+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 99999999885 59999998753100 00 00011111 01122233333
Q ss_pred CCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-c
Q 001041 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1178)
Q Consensus 509 ~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1178)
|++ .......+||||||||++||||++.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 235566789999999999999999999999999999999999999999999876 3699999999999875 9
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 001041 588 DMIAVIHRGKIV-EKGTHSKLVE 609 (1178)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~ 609 (1178)
|+|++|++|+++ +.|+++++.+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7788776643
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=455.02 Aligned_cols=453 Identities=11% Similarity=0.065 Sum_probs=371.9
Q ss_pred hHhhhhhcCChhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhhHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIP-----VILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDSRFWALIYLALGAGSFLLSPA 780 (1178)
Q Consensus 707 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1178)
+++++.+.+|++. .+++.+++.++...+....+++.+.+++........ .......++++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666667665 566677777777888888899999999876533211 1111223444455566677778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 781 QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT 860 (1178)
Q Consensus 781 ~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~ 860 (1178)
..++......++..++|++.+++....++.||| +++|++++|+++|++.+.+.+...+..++..++.+++.+++++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d---~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLD---SRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCC---CCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999 36899999999999999999999999999999999988888876
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhh
Q 001041 861 -ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTG 939 (1178)
Q Consensus 861 -~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~ 939 (1178)
++|.+++++++.+|+.+++..++.+++.+..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHh-c----CCCCHHHHHH-HHHH---HHHHHHHHHHHhhchhhHHH
Q 001041 940 IRQGMVSGGGFGASFFLLFA--FYAASFYAGARLVE-D----GKATFSDVFK-VFFS---LTMTAIGISQSSSFSSDSNK 1008 (1178)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~l~~-~----g~~t~g~l~~-~~~~---~~~~~~~l~~~~~~~~~~~~ 1008 (1178)
.+.....+...++..++... ..++.++.|...+. . |.+|.|.+++ ++.+ +..+..|+..+......+++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777543 22233333442332 2 7889888776 4444 56668999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCC------C--C-CCC-------------CcccCccccEEEeeeEEeCCCCCCccccccceE
Q 001041 1009 AKSAAASIFAIIDRESKIDP------S--D-ESG-------------TILEDVKGEIELHHVSFKYPSRPDVQVFRDLNL 1066 (1178)
Q Consensus 1009 ~~~s~~ri~~~l~~~~~~~~------~--~-~~~-------------~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf 1066 (1178)
+.++.+|++++++.+++... . + ... .......+.|+|+||+|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 99999999999976433210 0 0 000 001113467999999999974 2369999999
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCC--
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-- 1144 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-- 1144 (1178)
+|++||++|||||||||||||+++|+|+|+|++|+|.+|+ |++|++|||+|++|++|++|||.++..
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 678999999999999999999998731
Q ss_pred ----CCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1145 ----GDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1145 ----~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++.++++++++++.+++++++.+ |.||||..
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~ 577 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQ 577 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCccccc
Confidence 24678999999999999999988 99999874
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-46 Score=452.98 Aligned_cols=209 Identities=29% Similarity=0.424 Sum_probs=168.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC-----------------CCH---------HHHHHHHHHhcH-------HHHHHhC
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD-----------------ATT---------EEIRVATELANA-------AKFIDKL 508 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~-----------------~~~---------~~~~~~~~~~~~-------~~~i~~~ 508 (1178)
+||+|+|+++. .|++||+.++... ..+ .++.++++.++. .+.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999885 6999999875311 001 112222222221 2223333
Q ss_pred CCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-c
Q 001041 509 PQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1178)
Q Consensus 509 ~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1178)
|++ .......+||||||||++||||++.+|++|||||||++||+++...+.+.|++. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 135566789999999999999999999999999999999999999999999875 3699999999999876 8
Q ss_pred CEEEEEeCCEEE-EecChhHHhc
Q 001041 588 DMIAVIHRGKIV-EKGTHSKLVE 609 (1178)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l~~ 609 (1178)
|+|++|++|+++ ..|+++++.+
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 6788777653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=400.40 Aligned_cols=229 Identities=29% Similarity=0.481 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~ 456 (1178)
-+.++|++..|... ....++++|||+|++||.+|+||+||||||-..+.++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 37889998888532 245799999999999999999999999999999999999965 368999999999999888
Q ss_pred HHh----cceEEEcCCCCC-Cc------ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 457 WIR----KKIGLVSQEPVL-FT------GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 457 ~~r----~~i~~v~Q~~~l-~~------~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
.+| .+|++++|+|.- .| .-|.|-|..... ....++..+.++.+++.+ -...+....+.
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~--------p~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE--------PEKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc--------hhhhhhhCCcc
Confidence 776 389999999952 11 134555554322 112234444444444322 13345667789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
||||||||+.||.||..+|++||-||||.|||.....+|.+.++++.+ +-.+++|||++..+++ ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999988753 6799999999999986 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 001041 600 EKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~ 619 (1178)
|.|+.+++.+++...|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH
Confidence 99999999988777777654
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=376.76 Aligned_cols=220 Identities=34% Similarity=0.528 Sum_probs=199.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-----CcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-----GEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-----G~i~i~g~~~~~--~~ 454 (1178)
..++++|+++.|+ ++.+|+|||++|++++++|++||||||||||++++.|+.+..+ |+|.++|+|+-+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999997 3469999999999999999999999999999999999988865 999999999965 57
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
...+|++||+|+|.|.-|..||.||+.||..- .-++.++.+++.+.|++.++. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 89999999999999999999999999998421 124668889999999988743 46678889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||+||||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||+++...+ +|+...+..|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999889999999999998766 899999999999999999999
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
..++
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 8775
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-46 Score=425.12 Aligned_cols=227 Identities=30% Similarity=0.491 Sum_probs=198.4
Q ss_pred CCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecC-
Q 001041 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLK- 451 (1178)
Q Consensus 378 ~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~- 451 (1178)
++..+.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |.+|+|.+||+++.
T Consensus 75 ~~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 75 FNHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 4455789999999999643 3579999999999999999999999999999999999996 56999999999997
Q ss_pred -CCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHHH-----HHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 452 -EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEEI-----RVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 452 -~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~-----~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
+.+...+|++++||||+||+|++|++|||.|+.. ..++++. ..+++.++ +++++++.+++++.+|
T Consensus 154 ~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~~l~~~~~~~~~~L 226 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWDEVKDDLDKAGNAL 226 (329)
T ss_pred cccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------CcchhhhhhhCCcccC
Confidence 4556788999999999999999999999998632 1333333 33344443 3445678899999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|||||||+|||||++++|+||||||||++||+++.+.++++|+++.+++|+|+|||+++++.. ||+|++|++|+|++.|
T Consensus 227 SgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g 306 (329)
T PRK14257 227 SGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306 (329)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999998888999999999999987 9999999999999999
Q ss_pred ChhHHhcCCC
Q 001041 603 THSKLVEDPE 612 (1178)
Q Consensus 603 ~~~~l~~~~~ 612 (1178)
+++++...+.
T Consensus 307 ~~~~l~~~~~ 316 (329)
T PRK14257 307 ETKTIFIHPK 316 (329)
T ss_pred CHHHHhcCCC
Confidence 9999987643
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=384.25 Aligned_cols=222 Identities=35% Similarity=0.578 Sum_probs=190.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+|+|||++|. ++.+++|+||+|++||+++++|||||||||++++|.|+++|++|+|++||.++++++...||.+||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc--chhcCCCCCCChHHHHHHHHHHHh
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~--t~~~~~g~~lSgGqkqri~lARal 537 (1178)
||-|..-|| +-||.|||.+- |. .+.+++.+- . ++.+..+ |++ ....+..+.|||||+|||.+||||
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r--~---~ELl~lv--gL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKR--A---DELLDLV--GLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHH--H---HHHHHHh--CCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 999999999 68999999863 32 223332221 1 1212111 443 234566789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhHHhcCCCch
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPEGA 614 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 614 (1178)
..+|+|+|+|||++||||-+.+.+|+-+.++.+ ++|+|+|||+++.. +.+|||.+|++|+|++.|+|++++.++...
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~ 230 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAND 230 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHH
Confidence 999999999999999999999999998877653 79999999999975 569999999999999999999999987655
Q ss_pred HH
Q 001041 615 YS 616 (1178)
Q Consensus 615 ~~ 616 (1178)
|-
T Consensus 231 FV 232 (309)
T COG1125 231 FV 232 (309)
T ss_pred HH
Confidence 54
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-47 Score=396.02 Aligned_cols=223 Identities=35% Similarity=0.581 Sum_probs=189.3
Q ss_pred EEEEeEEEECCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HH
Q 001041 384 IELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1178)
Q Consensus 384 i~~~~~~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1178)
|+++||++.|+.. ....+|+|+||+|++||+.||+|+||+|||||++++.++-.|++|+|.+||.|+..++.. .+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 124699999999999999999999999999999999999999999999999998887754 55
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
|++||+++|++.|++ -||.+|++|+.+- .+.+++. .+...+.+.+ |+....+....+||||||||++|||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~--~RV~elLelV-----gL~dk~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK--QRVAELLELV-----GLSDKADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHH--HHHHHHHHHc-----CChhhhccCchhcCcchhhHHHHHH
Confidence 789999999999996 8999999997542 2222221 1112222222 5555566777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||..+|+|||.|||||||||+|.+.|.+.+++.. -+-|+++|||.++.+++ ||||.||++|+++|.|+..++..++.
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk 234 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPK 234 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcc
Confidence 9999999999999999999999999999987764 37899999999999987 99999999999999999999998864
Q ss_pred c
Q 001041 613 G 613 (1178)
Q Consensus 613 ~ 613 (1178)
.
T Consensus 235 ~ 235 (339)
T COG1135 235 H 235 (339)
T ss_pred h
Confidence 3
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=475.06 Aligned_cols=207 Identities=26% Similarity=0.391 Sum_probs=166.0
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cc
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TG 474 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ 474 (1178)
..+|+|+|+.++|||+++|+||||||||||+++|.|.++|. +|+|.+||+++.+... |+.++||+|++.++ ..
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 9999999998866542 67899999998766 57
Q ss_pred cHHHHHhcCCCC------------CCHHH----------H---HHHHHHh------cHHHHHHh--CCCCccchhcCC-C
Q 001041 475 SIKDNIAYGKDD------------ATTEE----------I---RVATELA------NAAKFIDK--LPQGIDTLVGEH-G 520 (1178)
Q Consensus 475 ti~~ni~~~~~~------------~~~~~----------~---~~~~~~~------~~~~~i~~--~~~g~~t~~~~~-g 520 (1178)
||+||+.|+..- .+.++ + .+++... ..++.++. +.+-.+|.+|+. .
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 999999985210 01111 1 0110000 01223333 333446778654 3
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcc--hhhccCEEEEEeCC
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLS--TVRNADMIAVIHRG 596 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~--~~~~~d~i~~l~~G 596 (1178)
..||||||||++|||+++.+|++++|||||++||+.+...+.+.++++. .++|+|+++|++. ....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 6799999999999999999999999999999999999999999998875 3789999999973 44669999999999
Q ss_pred EEEEecChhHHh
Q 001041 597 KIVEKGTHSKLV 608 (1178)
Q Consensus 597 ~i~~~g~~~~l~ 608 (1178)
++++.|+.+++.
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999875
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-44 Score=440.59 Aligned_cols=207 Identities=22% Similarity=0.342 Sum_probs=159.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999998832 589
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCC---C-----------HHHHHHHHH----------HhcHHHHHHhCCCCcc-chhcC
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDA---T-----------TEEIRVATE----------LANAAKFIDKLPQGID-TLVGE 518 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~---~-----------~~~~~~~~~----------~~~~~~~i~~~~~g~~-t~~~~ 518 (1178)
|++|++..+..|+.+.+.-+.... + ...+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 999976545556655543211000 0 000000000 01122334443 443 23455
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
...+||||||||++|||||+.+|++|||||||++||+.+..++.+.+++. +.|+|+|||+.+++.. ||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 66789999999999999999999999999999999999999999998775 5799999999999875 99999999999
Q ss_pred EE-EecChhHHh
Q 001041 598 IV-EKGTHSKLV 608 (1178)
Q Consensus 598 i~-~~g~~~~l~ 608 (1178)
+. ..|++++..
T Consensus 224 i~~~~g~~~~~~ 235 (638)
T PRK10636 224 LFEYTGNYSSFE 235 (638)
T ss_pred EEEecCCHHHHH
Confidence 97 467766553
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=391.48 Aligned_cols=234 Identities=49% Similarity=0.807 Sum_probs=212.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 356999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|++++|+.|++||+.++.+....+++...++..++.+.+..+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999986554455666777777888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++..+ .+.|..+.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~ 234 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHH
Confidence 9999999999999999999999988778999999999999988999999999999999999998876 45565544
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-43 Score=434.50 Aligned_cols=207 Identities=24% Similarity=0.435 Sum_probs=159.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|. ..+
T Consensus 3 ~l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-----------~~~ 68 (635)
T PRK11147 3 LISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-----------LIV 68 (635)
T ss_pred EEEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC-----------CEE
Confidence 3889999999963 46999999999999999999999999999999999999999999999872 147
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCC------------------CCHHHHHHHHH-------------HhcHHHHHHhCCC
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDD------------------ATTEEIRVATE-------------LANAAKFIDKLPQ 510 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~------------------~~~~~~~~~~~-------------~~~~~~~i~~~~~ 510 (1178)
+|++|++.. ..+++.+++..+... ...+.+..... ...+.+.++.+
T Consensus 69 ~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-- 146 (635)
T PRK11147 69 ARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL-- 146 (635)
T ss_pred EEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--
Confidence 889987643 236777765322100 00010000000 01122333333
Q ss_pred CccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCE
Q 001041 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADM 589 (1178)
Q Consensus 511 g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~ 589 (1178)
|+. .......||||||||++|||||+.+|++|||||||++||+++..++.+.|+++ +.|+|+|||+..++.. ||+
T Consensus 147 gl~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 147 GLD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred CCC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCe
Confidence 332 24456789999999999999999999999999999999999999999999876 3699999999999875 999
Q ss_pred EEEEeCCEEEE-ecChhHHhc
Q 001041 590 IAVIHRGKIVE-KGTHSKLVE 609 (1178)
Q Consensus 590 i~~l~~G~i~~-~g~~~~l~~ 609 (1178)
|++|++|+++. .|++++.+.
T Consensus 223 i~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 223 IVDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEEECCEEEEecCCHHHHHH
Confidence 99999999984 577766543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=391.00 Aligned_cols=239 Identities=32% Similarity=0.596 Sum_probs=217.7
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHh
Q 001041 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 380 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
..+.|+++|++++|+.. .+.+|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999743 24699999999999999999999999999999999999999999999999999988888889
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+.++|++|+|++|++|+++|+.+.. ....++++.+++..++.+.+..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC-KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC-CCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999997542 234566777888888999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+|+++||||||++||+++...+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|..++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999887778999999999999988999999999999999999999877566666655
Q ss_pred H
Q 001041 620 R 620 (1178)
Q Consensus 620 ~ 620 (1178)
.
T Consensus 254 ~ 254 (257)
T cd03288 254 R 254 (257)
T ss_pred h
Confidence 3
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=377.10 Aligned_cols=214 Identities=33% Similarity=0.526 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++|+|+ ++++|+|+||++++||+++|+||||||||||+++|.|+++|.+|+|.+||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999997 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 463 GLVSQEP-VLFTGSIKDNIAYGKDDA----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 463 ~~v~Q~~-~l~~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
|||||++ .-|.-||+|-+.+|+-.+ +.+.+.++++.+++.++ ..+.-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-----------a~r~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-----------ADRPVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-----------hcCcccccChhHHHHH
Confidence 9999997 456789999999986321 22345566666665554 3344567999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
.|||||.++|+||+||||||+||....-.+.+.++++. +++|+|+|.|+++.. +.||++++|++|+++..|+|+|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999998876 369999999999986 569999999999999999999887
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 64
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=389.63 Aligned_cols=217 Identities=32% Similarity=0.552 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++.+|++. . +++|+||+|+.||+++++|||||||||||++|.|+.+|++|+|.|||.+++++++.+ +.|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999642 2 999999999999999999999999999999999999999999999999999999885 579
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
|+|+|+.-|| +.||+|||.|+..... ++++.++++..++.+ .+..+..+||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~-----------lL~r~P~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEH-----------LLNRKPLQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChh-----------HHhcCcccCChhhHHHHHHHH
Confidence 9999999999 5799999999865321 345555555554444 455566889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||.++|+++|||||+|+||++....+...|+++.+ +.|+|.|||+...+. .+|||.||++|+|.+.|+|.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999888888877643 579999999988765 599999999999999999999998765
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 227 n~f 229 (338)
T COG3839 227 NLF 229 (338)
T ss_pred chh
Confidence 444
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=380.85 Aligned_cols=227 Identities=50% Similarity=0.857 Sum_probs=209.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++|++++|+. .+++++|+||++++||+++|+||||||||||+++|+|+++|.+|+|.++|.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 35899999999963 2369999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
++|++|++++|.+|++||+.++.+....+++..+++.+++.+.++.+|.|+++.++....+||||||||++||||++++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999876655667777888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999887678999999999999888999999999999999998887653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-43 Score=357.88 Aligned_cols=222 Identities=34% Similarity=0.537 Sum_probs=188.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HH
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1178)
..|++++|+++|++ +.+++|+||+|++||.++|+|+||||||||+++|.|++.|++|+|.++|.|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 35999999999964 4699999999999999999999999999999999999999999999999999988764 56
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCC---CHHHHHH----HHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHH
Q 001041 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDA---TTEEIRV----ATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQ 529 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~---~~~~~~~----~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkq 529 (1178)
|+++|+++|.--||+ -||+||+.|...++ +++.+++ .+++++ +... ...-...||||++.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VG-----------L~~~~~~~~PsELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVG-----------LRGAAADLYPSELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcC-----------CChhhhhhCchhhcchHHH
Confidence 899999999999995 69999999864332 3333332 333343 3333 22334789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|+|||||+..||+|+++|||||+|||.+...+.+.|+++.+ +.|+++|||+++++.. ||+|+++.+|+|+..|+++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999888877653 6899999999998865 89999999999999999999
Q ss_pred HhcCCCchHHH
Q 001041 607 LVEDPEGAYSQ 617 (1178)
Q Consensus 607 l~~~~~~~~~~ 617 (1178)
+.+.++...++
T Consensus 233 l~~sd~P~v~q 243 (263)
T COG1127 233 LLASDDPWVRQ 243 (263)
T ss_pred HHhCCCHHHHH
Confidence 99874433333
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=381.55 Aligned_cols=226 Identities=55% Similarity=0.908 Sum_probs=208.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4689999999643 236999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|++|..|++||+.++......+++...++..++.+.++.+|.|+++..+....+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556667777788888999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 226 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ 226 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc
Confidence 9999999999999999999999988778999999999999988999999999999999999988765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=381.16 Aligned_cols=231 Identities=50% Similarity=0.808 Sum_probs=210.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 468999999963 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|++|+.|++||+.++.+..+++++...++.+++.+.+..+|.|+++.+..+..+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987665566677778888888899999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
+||||||++||+++...+.+.+.++.+++|+|++||+++.+..||++++|++|++++.|+.+++... ...|..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~ 231 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAE 231 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHH
Confidence 9999999999999999999999887668899999999999988999999999999999999888764 344443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=381.53 Aligned_cols=227 Identities=63% Similarity=1.044 Sum_probs=207.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|+...+.++|+|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|.++...+....+++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997533356999999999999999999999999999999999999999999999999998877777788899
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|+++..|++||+.++.+....++....++..++.+.+..+|.|+++..+....+||||||||++||||++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999987655556667777777888888999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999887678899999999999988999999999999999999888754
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=403.25 Aligned_cols=208 Identities=32% Similarity=0.493 Sum_probs=165.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+ ++++|+|+||++.+|+++||||+||||||||+++|.|..+|++|+|..++. -++
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 488999999996 357999999999999999999999999999999999999999999998752 279
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCCH--HHHHHHHH------------------H-------hcHHHHHHhCCCCccc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDATT--EEIRVATE------------------L-------ANAAKFIDKLPQGIDT 514 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~~--~~~~~~~~------------------~-------~~~~~~i~~~~~g~~t 514 (1178)
+|++|+|.... .||++.+..+...... .+++.+.. . ..+...+..+ |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 99999999885 4999999876532111 11111100 0 1122222222 2333
Q ss_pred hhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEE
Q 001041 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVI 593 (1178)
Q Consensus 515 ~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l 593 (1178)
. ...-.+||||||-|++|||||+.+||+|||||||++||.++..++.+.+.+. ++ |+|+|||+.+++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 2 4455689999999999999999999999999999999999999999999864 45 99999999999987 9999999
Q ss_pred eCCEEE-EecChhHHhc
Q 001041 594 HRGKIV-EKGTHSKLVE 609 (1178)
Q Consensus 594 ~~G~i~-~~g~~~~l~~ 609 (1178)
+.|++. +.|+|+..++
T Consensus 224 d~g~l~~y~Gny~~~~~ 240 (530)
T COG0488 224 DRGKLTPYKGNYSSYLE 240 (530)
T ss_pred cCCceeEecCCHHHHHH
Confidence 999887 5566655443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=364.15 Aligned_cols=195 Identities=35% Similarity=0.510 Sum_probs=167.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.+++++++.+|+. ..+|+|+||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.++..-. ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4789999999974 56999999999999999999999999999999999999999999999998874433 479
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++-||. -||+||+.++.+... .++..+.++.+++.++ -+....+||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~-----------~~~~P~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGF-----------EDKYPHQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcch-----------hhcCccccChHHHHHHHHHH
Confidence 99999999997 799999999865321 2234444555544444 44556799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1178)
||..+|++||||||++|||+.|...+++.+.++.+ ++|+++|||+.+..- .+|||++|.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999998887764 589999999999865 59999999983
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=347.93 Aligned_cols=467 Identities=20% Similarity=0.228 Sum_probs=335.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 001041 112 LGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMAT 191 (1178)
Q Consensus 112 l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~ 191 (1178)
+.+...+...+........++..-.++|..+.++++..|+..+++. .+++++.++++|+..|. +-...+..+.+....
T Consensus 57 llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il 134 (546)
T COG4615 57 LLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELVQAIIL 134 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHHHHHHH
Confidence 3333344444555566677888999999999999999999999975 99999999999999998 434556778888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHH--HHH
Q 001041 192 FLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAM--SNY 269 (1178)
Q Consensus 192 ~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~--~~~ 269 (1178)
++++.....++++.+.++.++.+.+.++...+...+..+......+..++..+..+..+.|.|.++...-..+.. +.+
T Consensus 135 ~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~ 214 (546)
T COG4615 135 TLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLY 214 (546)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhc
Confidence 999999999999988877777777777777776666666666777788889999999999999998764322211 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 001041 270 KKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVN-VMVAVLTGSMSLGEASPCLSAFG 348 (1178)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~~~~~~~~~~~ 348 (1178)
...-+...+.......+.-......+++..+.....+|.... ..+...++.. .....+....++..+...++.+.
T Consensus 215 ~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~----~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~ 290 (546)
T COG4615 215 IPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALS----LGWASTNVAATIVLVLLFLRTPLLSAVGILPTLL 290 (546)
T ss_pred CcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh----hccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHH
Confidence 111111111111111111011111222222223333333221 1222112222 22223333456777777778888
Q ss_pred HHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHH
Q 001041 349 AGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTV 428 (1178)
Q Consensus 349 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl 428 (1178)
.+.+|..++.+.-..++...... +++.++++ .|+++||.|+|+.. ..-+.-||++|++||+|-|+|.+||||||+
T Consensus 291 ~AqvA~~kiakle~~~~~a~~~~--~q~~p~~~-~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~ 365 (546)
T COG4615 291 TAQVAFNKIAKLELAPYKADFPR--PQAFPDWK-TLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTL 365 (546)
T ss_pred HHHHHHHHHHHhhcCCccccCCC--CCcCCccc-ceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHH
Confidence 88999988877654332211111 12223343 59999999999743 367888999999999999999999999999
Q ss_pred HHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHh
Q 001041 429 ISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDK 507 (1178)
Q Consensus 429 ~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~ 507 (1178)
+++|.|+|.|++|+|++||.+++.-++++.|+-++-|+-|-|+|+.++ |.+. ++++.+..-++.-.+.... +
T Consensus 366 ~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~kt-s 438 (546)
T COG4615 366 AMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAHKT-S 438 (546)
T ss_pred HHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhhhh-c
Confidence 999999999999999999999999999999999999999999998765 3333 5666666666555443332 2
Q ss_pred CCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh
Q 001041 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 508 ~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~ 585 (1178)
+.+|--+ ...||-|||.|+|+--|++-+.||++|||=-+--||.-++.+.+.+...+ +|||++.|||+-.+..
T Consensus 439 l~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~ 513 (546)
T COG4615 439 LNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI 513 (546)
T ss_pred ccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh
Confidence 2222111 13589999999999999999999999999999999999999887765544 5899999999999999
Q ss_pred ccCEEEEEeCCEEEEe
Q 001041 586 NADMIAVIHRGKIVEK 601 (1178)
Q Consensus 586 ~~d~i~~l~~G~i~~~ 601 (1178)
+|||++.|++|+++|.
T Consensus 514 ~ADrll~~~~G~~~e~ 529 (546)
T COG4615 514 HADRLLEMRNGQLSEL 529 (546)
T ss_pred hHHHHHHHhcCceeec
Confidence 9999999999999975
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=374.78 Aligned_cols=220 Identities=35% Similarity=0.653 Sum_probs=204.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
|.++++|++++|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999743 2469999999999999999999999999999999999999999999999999988888888899
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
++|++|+|.++.+|++||+.+... ...+++.++++..++.+.+..+|.|+++..++.+.+||||||||++||||++++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999986543 5667788888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999998877789999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=424.81 Aligned_cols=219 Identities=23% Similarity=0.312 Sum_probs=159.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC---CCCCCcEEECCeecCC--CCH-
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLIDGINLKE--FQL- 455 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~---~~~~G~i~i~g~~~~~--~~~- 455 (1178)
..|+++|++++|++ .++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+.++++.. .+.
T Consensus 176 ~~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~ 252 (718)
T PLN03073 176 KDIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTAL 252 (718)
T ss_pred eeEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHH
Confidence 35999999999963 35999999999999999999999999999999999864 4788999754433211 111
Q ss_pred -----------HHHhcceEEEcCCCCCCcccHHHHHhcCCC-CCCH----HHHHHHHHHhc----------HHHHHHhCC
Q 001041 456 -----------QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATT----EEIRVATELAN----------AAKFIDKLP 509 (1178)
Q Consensus 456 -----------~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~----~~~~~~~~~~~----------~~~~i~~~~ 509 (1178)
..++..+++++|+|-+...+..+|...... ..+. +++.++.+..+ +.+.+..+
T Consensus 253 ~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l- 331 (718)
T PLN03073 253 QCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL- 331 (718)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC-
Confidence 112455889999886544454455422110 0111 22222222221 11223332
Q ss_pred CCcc-chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-c
Q 001041 510 QGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1178)
Q Consensus 510 ~g~~-t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1178)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. |
T Consensus 332 -gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~ 408 (718)
T PLN03073 332 -SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVV 408 (718)
T ss_pred -CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhC
Confidence 332 2234445789999999999999999999999999999999999999999999886 6899999999999876 9
Q ss_pred CEEEEEeCCEEE-EecChhHH
Q 001041 588 DMIAVIHRGKIV-EKGTHSKL 607 (1178)
Q Consensus 588 d~i~~l~~G~i~-~~g~~~~l 607 (1178)
|+|++|++|++. ..|++++.
T Consensus 409 d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 409 TDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred CEEEEEECCEEEEeCCCHHHH
Confidence 999999999996 56776654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=356.43 Aligned_cols=227 Identities=30% Similarity=0.484 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC-HHHHhc
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~ 460 (1178)
.++++|+++.|+.+. ..++|+||||+|.+||+++|||+||||||||+++|.|+.+|++|+|.++|.++.... ....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999997532 125999999999999999999999999999999999999999999999997765543 335678
Q ss_pred ceEEEcCCCCC-C--cccHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVL-F--TGSIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l-~--~~ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
.|-+|+|||.- + .-||++-|.=+.. ....++++++++.+++.+. ........|||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~----------~l~R~P~eLSGGQ~QRiaI 152 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPS----------FLDRRPHELSGGQRQRIAI 152 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHH----------HHhcCchhcChhHHHHHHH
Confidence 89999999952 2 3467666642211 1223446666666655332 2345667899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCC--eEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~--t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||.-+|++||||||||+||+.....|.+.+.++.+++ |.|+|||++..+.+ ||||+||++|+++|.++.+++...
T Consensus 153 ARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~ 232 (252)
T COG1124 153 ARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232 (252)
T ss_pred HHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcC
Confidence 999999999999999999999999999999998877655 99999999999987 999999999999999999999887
Q ss_pred CCchHHHHH
Q 001041 611 PEGAYSQLI 619 (1178)
Q Consensus 611 ~~~~~~~~~ 619 (1178)
+...|.+..
T Consensus 233 ~~h~ytr~L 241 (252)
T COG1124 233 PSHPYTREL 241 (252)
T ss_pred CccHHHHHH
Confidence 556666543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=392.80 Aligned_cols=225 Identities=31% Similarity=0.531 Sum_probs=187.4
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1178)
|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++..++..+ .|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999998887654 47
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
++|+|++|++.+|. .|++||+.++.. ..+.++.++. ..+.++.+ |+..........||||||||++||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~-----v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRK-----VTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 89999999999984 799999997532 1222222111 11222222 44444556678899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1178)
|+.+|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++..
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~ 234 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKT 234 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCc
Confidence 9999999999999999999999999999988754 7899999999999865 999999999999999999999876544
Q ss_pred hH
Q 001041 614 AY 615 (1178)
Q Consensus 614 ~~ 615 (1178)
.+
T Consensus 235 ~~ 236 (343)
T TIGR02314 235 PL 236 (343)
T ss_pred HH
Confidence 33
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=364.75 Aligned_cols=210 Identities=29% Similarity=0.495 Sum_probs=182.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+++|+|+++|.+|+|.+.|.+.++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999642 59999999999999999999999999999999999999999999999987665433 4589
Q ss_pred EEEcCCC---CCCcccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 463 GLVSQEP---VLFTGSIKDNIAYGKDDA----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 463 ~~v~Q~~---~l~~~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
|||||.. |-|..||+|-+.+|.... +.+++.++++.+++.+.. ...-..|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-----------~r~i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-----------DRQIGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-----------CCcccccCcHHHH
Confidence 9999965 779999999999984321 247778888888776543 3344569999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|+.|||||.++|++|+|||||+++|+.++..+.+.|+++.+ ++||++|||+++.+.. +|+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999988864 8999999999999865 9999999 5788999999998
Q ss_pred hcC
Q 001041 608 VED 610 (1178)
Q Consensus 608 ~~~ 610 (1178)
...
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 764
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=387.90 Aligned_cols=219 Identities=33% Similarity=0.563 Sum_probs=191.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|++.+|+ +..+++|+||+|++||++++.|||||||||+|++|.|+..|++|+|.+||.++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3589999999996 35799999999999999999999999999999999999999999999999999999987 468
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
|++|+|+.-|| +.||+|||.||... ..+ +++.++++.+++.++- .++...|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~-----------~R~p~qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFA-----------DRKPHQLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhh-----------hhChhhhChHHHHHHHH
Confidence 99999999999 68999999999751 122 3566666666665543 45567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||..+|++||||||+||||.+-...++.-++++. .+.|.|+|||+.+.. ..+|||.||++|+|.+.|+|+|+...
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 999999999999999999999999998888887664 378999999998875 56999999999999999999999988
Q ss_pred CCchHH
Q 001041 611 PEGAYS 616 (1178)
Q Consensus 611 ~~~~~~ 616 (1178)
+...|-
T Consensus 228 P~~~fV 233 (352)
T COG3842 228 PATRFV 233 (352)
T ss_pred cchHHH
Confidence 755443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=369.52 Aligned_cols=215 Identities=38% Similarity=0.639 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC-CCCHHHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK-EFQLQWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~-~~~~~~~r~~ 461 (1178)
.++++|++|+|+++ .++|+++||+|++||.++|+|+||||||||++++.|+++|++|.|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999865 57999999999999999999999999999999999999999999999999998 4888899999
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCCC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 462 IGLVSQEP--VLFTGSIKDNIAYGKDDA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~ni~~~~~~~--~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+|||+|+| ++|..||.|.++||..+. +. +++.++++.+++.+ .......+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~-----------~~~r~p~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEE-----------LLDRPPFNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchh-----------hccCCccccCCcceeeHHh
Confidence 99999999 899999999999986542 33 33445555554443 3455668999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|.+|..+|++||||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+++.+|+|+++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999998864 4799999999999876 999999999999999999998765
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=333.89 Aligned_cols=209 Identities=33% Similarity=0.569 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|.+++|.|+|...+ -..+++|++||++||+||||||||||+++|.|+..|.+|+|.|+|+|....++.+ +-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChh
Confidence 56789999996432 2678999999999999999999999999999999999999999999998887764 4599
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+++|+.-|| .-||++||.+|... ...+++..++..+++..+.+++| ..||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 999999999 58999999998532 23467788888899988888887 4799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++++.+|++||||+|||||.-...+...+.++. ++.|+++|||+++.+.. +|+++++++|+|.++|+.+++.+.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999998888877777665 46799999999998865 999999999999999999998875
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=370.19 Aligned_cols=219 Identities=42% Similarity=0.738 Sum_probs=200.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|+++.|+.. ..++|+|+||++++|++++|+||||||||||+++|.|+.+|.+|+|.++|.++...+....|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 24699999999999999999999999999999999999999999999999998877777778899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+|++|+|++|..|++||+.++.+....+++.+.++..++.+.+..+|.|++|.+.+...+||||||||++||||++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 99999999998999999988655445667778888889988899999999999998889999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
++||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999876668999999999988789999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-42 Score=356.52 Aligned_cols=205 Identities=34% Similarity=0.515 Sum_probs=171.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1178)
++++|++..|.... ...+|+++||+|++||+++|+|||||||||||++|-|+..|++|.|.++|.|+..++.+ .+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996432 24699999999999999999999999999999999999999999999999999998854 344
Q ss_pred -cceEEEcCCCCCC-cccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhc-CCCCCCChHHHHH
Q 001041 460 -KKIGLVSQEPVLF-TGSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVG-EHGTQLSGGQKQR 530 (1178)
Q Consensus 460 -~~i~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~-~~g~~lSgGqkqr 530 (1178)
++||||+|+..|. +.|++|||.++.. .... ++....++.. |+..... ....+||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l-----------gl~~~~~~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL-----------GLEDRLLKKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc-----------CChhhhccCCchhcCHHHHHH
Confidence 6799999999887 5799999996321 1111 1222222222 4443333 5578999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEE
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1178)
+||||||+.+|+|++.||||++||.++.+.|.+.++++. .++|+|+|||+......|||++.|.+|++.
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 999999999999999999999999999999999998874 368999999999999999999999999954
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=386.20 Aligned_cols=222 Identities=26% Similarity=0.476 Sum_probs=188.2
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC------
Q 001041 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF------ 453 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~------ 453 (1178)
..|+++|++|+|+... +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3589999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcC
Q 001041 454 ----------QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGE 518 (1178)
Q Consensus 454 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~ 518 (1178)
+...+|++|+||+|+| ++|+.|++|||.|+... .+.++... ...+.++.+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKK-----LAKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHH-----HHHHHHHHc--CCChhHhcC
Confidence 3456788999999998 78999999999986321 23332221 112344444 564 45778
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCC
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1178)
.+.+||||||||++|||||+++|++|||||||++||+.+.+.+.+.+.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998764 5789999999999875 59999999999
Q ss_pred EEEEecChhHHhcC
Q 001041 597 KIVEKGTHSKLVED 610 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~ 610 (1178)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998764
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=337.25 Aligned_cols=206 Identities=30% Similarity=0.498 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1178)
|+|+||+.+|+.. +++|+|+||+|++||++.|+||||||||||+++|+++..|+.|+|.++|.|++.+... -+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999864 6799999999999999999999999999999999999999999999999999887644 5899
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+||+|+||-.|. .-||.||++|+..- .-.+++.++++.++|.+....+| ..|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 999999999876 67999999986431 11356677888888877777776 5799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhcc-CEEEEEeCCEEEEec
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA-DMIAVIHRGKIVEKG 602 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~-d~i~~l~~G~i~~~g 602 (1178)
|||+..+|++||-||||.+|||.+...|.+.+.++- .|.||++.||+.+.+..+ .|++.+++|+++...
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 999999999999999999999999999999988764 588999999999999874 689999999998643
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=346.41 Aligned_cols=216 Identities=32% Similarity=0.561 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC---HHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r 459 (1178)
.|+++|++.+||+ ++.+|+||||+|++||+++|+|+||||||||+++|.|+.+|++|+|.++|.++.... +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 467999999999999999999999999999999999999999999999999998877 55678
Q ss_pred cceEEEcCCCCCC-cccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 460 KKIGLVSQEPVLF-TGSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
+++||++|++-|. ..|+-+|++.|.-.+ +.++...+++ .++.+ |+....-.+..+|||||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~------aLerv--gi~~~A~qra~~LSGGQ 152 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALD------ALERV--GILDKAYQRASTLSGGQ 152 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHH------HHHHc--CcHHHHHHHhccCCcch
Confidence 8999999999887 579999999885432 2333322222 22222 44444455667999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
+||++|||||+++|+|+|-|||+|+|||.+.+.+.+.+++.. .+.|+|+.-|.+++.+. ||||+-|++|+|+..|++
T Consensus 153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999998765 47899999999999864 999999999999999999
Q ss_pred hHHh
Q 001041 605 SKLV 608 (1178)
Q Consensus 605 ~~l~ 608 (1178)
+|+-
T Consensus 233 ~el~ 236 (258)
T COG3638 233 SELT 236 (258)
T ss_pred hhhh
Confidence 9864
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=369.78 Aligned_cols=220 Identities=50% Similarity=0.832 Sum_probs=197.1
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH
Q 001041 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 379 ~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
...+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+....
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34577999999999975433469999999999999999999999999999999999999999999999999887777777
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+++++|++|+|.+|..|++||+.++.......++....+...+.+.++.+|.|+++.+.+...+||||||||++||||++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999875544444445555556677889999989999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
++|+++||||||++||+++...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999987777899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=413.60 Aligned_cols=193 Identities=23% Similarity=0.371 Sum_probs=154.9
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE-----------ECCeecCCCCH
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-----------i~g~~~~~~~~ 455 (1178)
++++++|+. ...+|++++ .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 358899963 236899999 8999999999999999999999999999999999997 88988765432
Q ss_pred H--HHhcc----eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 456 Q--WIRKK----IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 456 ~--~~r~~----i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
. ..+.+ +.|++|.|.+|.+|++||+... ...+++.++++.. |++........+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~---~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV---DERGKLDEVVERL-----------GLENILDRDISELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh---hHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHH
Confidence 1 11123 4455667788889999999742 1122333333332 4444455666789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
|++||||++++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|+++
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999887668899999999999875 9999999753
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=359.72 Aligned_cols=217 Identities=32% Similarity=0.532 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe---ecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~---~~~~~~~~~~r 459 (1178)
.|+++|++..|+. .++++|||++|+.||.+|+.|||||||||||++|.|+..|++|+|.++|. |.++...+ .
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 4788999999964 46899999999999999999999999999999999999999999999999 66664433 3
Q ss_pred cceEEEcCCCCCC-cccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 460 KKIGLVSQEPVLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~-~~ti~~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
++||+|+|+.-+| ..||.+||.||.+- ....++.+.+++|+|...-+ ....+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~-----------ryP~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD-----------RYPAQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhh-----------cCchhcChHHHHH
Confidence 5799999999888 69999999999721 12345555566666554433 3457899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchh-hccCEEEEEeCCEEEEecChhHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
+||||||..+|++||||||++|||++..+.+++-+++... +.|+++|||+.+.. +.||||++|++|+|.+.|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999888887776643 68999999999986 55999999999999999999999
Q ss_pred hcCCCchH
Q 001041 608 VEDPEGAY 615 (1178)
Q Consensus 608 ~~~~~~~~ 615 (1178)
...++..|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 88766544
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=363.57 Aligned_cols=208 Identities=29% Similarity=0.518 Sum_probs=176.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.+++++++..|| ...+++||||++++||+.|+.|+||+|||||+++|.|+|+|++|+|.+||++++--++ +.+|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 489999999997 3468999999999999999999999999999999999999999999999999986655 567889
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
||+|.|++.|+ +-|+.|||.+|.+.. +..+.++ .+.+..+++ |++-...+....||-|||||+.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 99999999998 579999999998642 2222211 122222332 5555556666789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
|||++|++||||||||-|-|.....+++.++.+. .|+|+|+|||+++.+.. |||+-||.+|+++.
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 9999999999999999999998888888888775 58999999999999876 99999999999763
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=367.47 Aligned_cols=210 Identities=38% Similarity=0.610 Sum_probs=177.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCCcEEECCeecCCCC--HH
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLIDGINLKEFQ--LQ 456 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~-----~~~~G~i~i~g~~~~~~~--~~ 456 (1178)
|+++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|++ +|.+|+|.++|.++...+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999964 36999999999999999999999999999999999999 999999999999988776 56
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCCC---C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCC--CCCCChHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---T----TEEIRVATELANAAKFIDKLPQGIDTLVGEH--GTQLSGGQ 527 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~--g~~lSgGq 527 (1178)
.+|++++|++|++.+|..|++||+.++.... . ++++.++++.. |++...... +.+|||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~~LSgG~ 146 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA-----------ALWDEVKDRLHALGLSGGQ 146 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc-----------CCChHHhccCCcccCCHHH
Confidence 6788999999999988889999998753211 1 12223333333 333333333 47899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 147 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCccc
Confidence 9999999999999999999999999999999999999998765589999999999876 499999999999999998765
Q ss_pred H
Q 001041 607 L 607 (1178)
Q Consensus 607 l 607 (1178)
+
T Consensus 227 ~ 227 (227)
T cd03260 227 I 227 (227)
T ss_pred C
Confidence 3
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=361.41 Aligned_cols=467 Identities=16% Similarity=0.155 Sum_probs=321.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCcc------HHHHHHHhHHHHHHHHHHHH
Q 001041 108 KFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTG------EVVGRMSGDTVLIQDAMGEK 181 (1178)
Q Consensus 108 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G------~i~~r~s~D~~~i~~~~~~~ 181 (1178)
.|..++.+...+...+.+....+..+.-.-+-..++++-++....++-. ..| ..=+|+..|+..+.+...+.
T Consensus 91 ~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~~l 168 (604)
T COG4178 91 VFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTLDL 168 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHHHH
Confidence 3333444444444445554444444444444455566655555333221 333 23379999999988877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-----------HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 182 VGKFLQLMATFLGGFLIAFIKG-----------WL----LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVV 246 (1178)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~-----------~~----l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (1178)
...++..+.+++....+..-.+ +. +..++++.+++-.++..++++...+......+..+.....+
T Consensus 169 ~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~L 248 (604)
T COG4178 169 SFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSL 248 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHH
Confidence 7777777666555444433111 11 11122222333333444555555555555555556666777
Q ss_pred HHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Q 001041 247 EQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNV 326 (1178)
Q Consensus 247 ~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 326 (1178)
...-.+...|-.|+.|+.+.++..+..........+...+..-...+......++.++.+..++.....|.++.|.+...
T Consensus 249 vrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa 328 (604)
T COG4178 249 VRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQA 328 (604)
T ss_pred HHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHH
Confidence 77778889999999999888777765554443322221111111111111222222333344455567788898888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CCCcCCCCCcc--cCCCcccEEEEeEEEECCCCCCC
Q 001041 327 MVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP-----EIDAYDTKGKI--LDDIRGDIELRDVYFSYPARPNE 399 (1178)
Q Consensus 327 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~i~~~~~~~~y~~~~~~ 399 (1178)
...+.+...+++++......+..-++...|+.++....+ +.......... ....+..|+++|++..-|+. .
T Consensus 329 ~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~ 406 (604)
T COG4178 329 VGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--Q 406 (604)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--C
Confidence 777777777888888888888888888888877653221 10111100000 01114679999999998753 4
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
+.+++++|.+++||.+.|.|+||||||||+++|.|+.|--+|+|.... -..+-|+||.|.+-.||+||-
T Consensus 407 ~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~ 475 (604)
T COG4178 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLREA 475 (604)
T ss_pred eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHHH
Confidence 799999999999999999999999999999999999999999997752 136999999999999999999
Q ss_pred HhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHh
Q 001041 480 IAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1178)
Q Consensus 480 i~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~ 557 (1178)
|+++... .+|+++.+++.+|+|.+.++++.+- .+-..-||+|||||+++||.++++|++++|||+|||||+++
T Consensus 476 l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-----~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~ 550 (604)
T COG4178 476 LCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-----DRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550 (604)
T ss_pred HhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-----CcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHH
Confidence 9998765 7899999999999999999887432 22345799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEe
Q 001041 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1178)
Q Consensus 558 ~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1178)
+..+.+.+++.+.+.|+|-|.||.......++.+-++
T Consensus 551 e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 551 EDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999998887777666554
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-41 Score=368.45 Aligned_cols=218 Identities=31% Similarity=0.473 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCcEEECCeecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
.|+++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.+.+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999984 6899999999999888877888
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 460 KKIGLVSQEPVLFTGSIKDNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
++++|+||+|.+|..|++||+.++.... .++++...++.+++.+++ .+...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV-------KDKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh-------hHHhcCCcccCCHHHHHHH
Confidence 8999999999999999999998753110 111233333333332222 2345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+||||++++|+++||||||++||+.+...+.+.+.++.+++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999988777899999999999886 5999999999999999999998764
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=383.95 Aligned_cols=207 Identities=33% Similarity=0.538 Sum_probs=179.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH----hcceEEEcCCCCCCc-
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT- 473 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~- 473 (1178)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ |++++||+|++++|+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 468999999999999999999999999999999999999999999999999999988877 789999999999996
Q ss_pred ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001041 474 GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1178)
Q Consensus 474 ~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlD 547 (1178)
.||+|||.|+... .+. +++.++++.+ |++...++...+||||||||++|||||+++|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v-----------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLV-----------GLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------CCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 6999999986432 112 2222333332 5555667777899999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 548 EATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
||||+||+.+.+.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998764 3789999999999865 5999999999999999999999887554443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=364.74 Aligned_cols=217 Identities=35% Similarity=0.567 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH---HHHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 468999999963 469999999999999999999999999999999999999999999999999887664 56788
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 461 KIGLVSQEPVLFTG-SIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
.++|++|++.+|.. |++||+.++.. ..+.++.... +.+.++.+ |+.........+||||||||++||||
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~a 150 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARA 150 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 99999999998875 99999987532 1222222211 11223332 44444555667899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999988753 7899999999998865 999999999999999999988754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=373.36 Aligned_cols=217 Identities=32% Similarity=0.542 Sum_probs=186.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999743224699999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+|. ++..||+|||.|+... .+. +++.++++.. |++........+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV-----------GMQDFKEREPARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999984 5678999999986422 222 2233333333 444445556679999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999988753 7899999999999888999999999999999999988764
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=382.57 Aligned_cols=218 Identities=29% Similarity=0.512 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4889999999942 24699999999999999999999999999999999999999999999999999887765 3689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++.+|. .||+|||.|+... .+. +++.++++.. |++........+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARIL-----------ELEPLLDRKPRELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc-----------CChhHhhCChhhCCHHHHHHHHHHH
Confidence 99999999994 7999999987431 122 2233333333 4444455666799999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||+++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999988754 689999999999775 599999999999999999999988755
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 444
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=381.67 Aligned_cols=217 Identities=30% Similarity=0.545 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4689999999999999999999999999999999999999999999999999877654 4689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++.+|. .|++|||.|+... .+.+ ++.++++.. |+..........||||||||++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~-----------gl~~~~~r~~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV-----------DLAGFEDRYVDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 99999999995 6999999987431 1222 233333333 3444455667889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||+++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+.+.+. .||+|++|++|+|++.|+++++.+++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999988754 689999999999875 599999999999999999999988765
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 230 ~~~ 232 (351)
T PRK11432 230 SRF 232 (351)
T ss_pred chH
Confidence 443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=375.83 Aligned_cols=209 Identities=31% Similarity=0.488 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
-++++|++.+|+. .++|+|+||++.+||+++++|.||||||||+|.|.|.|+|++|+|.+||....-.++.+ ....
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4789999999973 57999999999999999999999999999999999999999999999999998777665 4567
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
|+.|.|++-|+ +-||.|||-+|.+... ..+..+..+ +.+..+ |++........+||+||||.|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 99999999988 6899999988875432 233333222 223333 221113334457999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1178)
||+..+++|+|||||||+|+.+..+.+++.++++. +|.++|+||||++.+.. ||||.||.||+.+..
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeee
Confidence 99999999999999999999998888889998876 68999999999999865 999999999998753
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=355.38 Aligned_cols=204 Identities=34% Similarity=0.600 Sum_probs=180.5
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.+.++++|++++|+.. ..++++|+||++++||+++|+|++|||||||+++|+|+++|.+|+|.++|.++...+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4579999999999743 246999999999999999999999999999999999999999999999999998888888888
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
.|+|++|+|.+|++|++||+.+..+ .+++++.++++ +++....|||||+||++||||++.+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~ 143 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKR 143 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence 9999999999999999999986432 33333322221 3456789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 144 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 144 PRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999987778999999999999888999999999999988764
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=372.19 Aligned_cols=220 Identities=33% Similarity=0.583 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC--HHHHh
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--~~~~r 459 (1178)
|+++|++++|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999997754 45678
Q ss_pred cceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc--chhcCCCCCCChHHHHHHHH
Q 001041 460 KKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID--TLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 460 ~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~--t~~~~~g~~lSgGqkqri~l 533 (1178)
.+|+||||+| .+|+.|++|||.|+... .+.++..+.. .+.++.+ |++ +........||||||||++|
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gL~~~~~~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-----KRAMNIV--GLDYEDYKDKSPFELSGGQKRRVAI 155 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH-----HHHHHHc--CCCchhhccCCcccCCHHHHHHHHH
Confidence 8999999998 67889999999976321 2333222111 1222222 443 44667778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999885 5999999999999999999998654
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=380.52 Aligned_cols=225 Identities=34% Similarity=0.564 Sum_probs=188.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1178)
|+++|++++|+... +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997311 356999999999999999999999999999999999999999999999999998877654 47
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
++|+|++|++.+|. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999885 7999999875321 22222211 122334433 55555666778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1178)
|+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+..
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999999999999999999999988753 7899999999999875 999999999999999999999876443
Q ss_pred hH
Q 001041 614 AY 615 (1178)
Q Consensus 614 ~~ 615 (1178)
.+
T Consensus 235 ~~ 236 (343)
T PRK11153 235 PL 236 (343)
T ss_pred HH
Confidence 33
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=362.18 Aligned_cols=221 Identities=34% Similarity=0.631 Sum_probs=187.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4889999999963 3699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|+|.+|..|++||+.++..... .+++... ++.+ |++ ........+||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYY---------LSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHH---------HHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999987532111 1222222 3332 333 23455678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...+.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999988753 7899999999999865 999999999999999999998865443444
Q ss_pred H
Q 001041 617 Q 617 (1178)
Q Consensus 617 ~ 617 (1178)
.
T Consensus 229 ~ 229 (241)
T PRK14250 229 K 229 (241)
T ss_pred H
Confidence 3
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=381.14 Aligned_cols=221 Identities=30% Similarity=0.492 Sum_probs=188.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4589999999999999999999999999999999999999999999999999887764 5689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .|++||+.|+... .+.++.. ..+.+.++.+ |++........+||||||||++|||||++
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~ 151 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALAT 151 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999995 7999999987432 1222211 1223334444 56666677888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+|+++|||||||+||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 152 SPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 9999999999999999999999999988754 689999999999875 599999999999999999999998765444
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=371.70 Aligned_cols=220 Identities=28% Similarity=0.533 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----CCHHH
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~ 457 (1178)
|+++|++|+|+... .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHH
Q 001041 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~ 532 (1178)
+|++++||+|+| .+|..|+.||+.|+... .+.++.... +.+.++.+ |+. ........+||||||||++
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~~LSgGqkqrva 154 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKI-----AAEKLEMV--GLADEFWEKSPFELSGGQMRRVA 154 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhccCCcccCCHHHHHHHH
Confidence 788999999998 78899999999986432 222222211 11223332 443 2345677899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|||||+.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998765 4789999999999885 5999999999999999999998654
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=363.87 Aligned_cols=222 Identities=28% Similarity=0.509 Sum_probs=185.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1178)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 469999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEI-------RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|+||++.+|.+ |++||+.++........+ ........+.+.++.+ |++.........||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999998875 999999876422110000 0001111233445554 666667778889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++.+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999998865 57899999999999865 999999999999999999988653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=364.36 Aligned_cols=223 Identities=31% Similarity=0.465 Sum_probs=185.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999963 3599999999999999999999999999999999999987 48999999998753 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|++++|++|++.+|..|++|||.++... ... +++..+++.+++.+. +.........+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNE-------VKDKLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchh-------hHHHHhCCcccCCHHHH
Confidence 5678899999999999999999999876321 111 223333333333211 12234456788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999755 999999999999999999999
Q ss_pred hcCCCchH
Q 001041 608 VEDPEGAY 615 (1178)
Q Consensus 608 ~~~~~~~~ 615 (1178)
.+++...|
T Consensus 237 ~~~~~~~~ 244 (254)
T PRK14273 237 FFNPKNTK 244 (254)
T ss_pred HhCCCChH
Confidence 86644433
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=365.51 Aligned_cols=219 Identities=32% Similarity=0.524 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 369999999999999999999999999999999999874 589999999999865 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|++++|++|++.+|..|++||+.++... . . .+++..+++.+++.+.+ ....+....+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV-------KDRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCHHHH
Confidence 5678899999999999989999999875311 1 1 12333334443332221 2345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998866789999999999985 4999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
.+.+
T Consensus 236 ~~~~ 239 (253)
T PRK14242 236 FTRP 239 (253)
T ss_pred HcCC
Confidence 7653
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=364.34 Aligned_cols=221 Identities=33% Similarity=0.530 Sum_probs=186.3
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--C
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--F 453 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~ 453 (1178)
.+.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 356999999999963 369999999999999999999999999999999999986 479999999999853 4
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
+...+|++++|++|+|.+|..|++||+.++... .+.+ +++++++..++.+ ++.....+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN-------EVKDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh-------hhHHHHhcCCCCCCHH
Confidence 556778899999999999999999999875321 2222 2333333333211 2234566778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877789999999999886 49999999999999999999
Q ss_pred HHhcCC
Q 001041 606 KLVEDP 611 (1178)
Q Consensus 606 ~l~~~~ 611 (1178)
++...+
T Consensus 241 ~~~~~~ 246 (260)
T PRK10744 241 TIFTKP 246 (260)
T ss_pred HHHhCC
Confidence 987653
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=370.23 Aligned_cols=221 Identities=31% Similarity=0.553 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHH
Q 001041 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~ 456 (1178)
.++++|++++|+... .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996422 24699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHH
Q 001041 457 WIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri 531 (1178)
.+|++|+||||+| .+|..|++|||.|+... .+.++.... +.+.++.+ |+++ .......+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHH
Confidence 6788999999998 68888999999986321 233322221 22334443 6763 45677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+|||||+.+|+++||||||++||+.+...+.+.++++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998874 3789999999999875 59999999999999999999887
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
+.
T Consensus 235 ~~ 236 (286)
T PRK13646 235 KD 236 (286)
T ss_pred hC
Confidence 64
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=362.44 Aligned_cols=218 Identities=32% Similarity=0.511 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCcEEECCeecCCC--CHH
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKEF--QLQ 456 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~~--~~~ 456 (1178)
++++|++++|++ .++++|+||+|++||+++|+|+||||||||+++|.|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998763 355
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
..|++++|+||++.+|..|++||+.++... .+.+ ++..+++..++.+.+ .........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV-------KDRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch-------hhHhhCCcccCCHHHHH
Confidence 667899999999999999999999875321 1122 222222222222111 14456677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998776789999999999886 49999999999999999999987
Q ss_pred cCC
Q 001041 609 EDP 611 (1178)
Q Consensus 609 ~~~ 611 (1178)
.++
T Consensus 232 ~~~ 234 (247)
T TIGR00972 232 TNP 234 (247)
T ss_pred hCC
Confidence 653
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=365.46 Aligned_cols=220 Identities=33% Similarity=0.513 Sum_probs=185.0
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--C
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~ 453 (1178)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~--~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
+...+|++++|++|+|.+|..|++||+.++... . .. +++.++++..++.+.+ .........+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV-------KDRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh-------hHHhhCCcccCCH
Confidence 456678899999999999988999999875310 0 11 2233333333332211 2345667789999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecCh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~ 604 (1178)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999999855 899999999999999999
Q ss_pred hHHhcC
Q 001041 605 SKLVED 610 (1178)
Q Consensus 605 ~~l~~~ 610 (1178)
+++..+
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 998754
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=359.76 Aligned_cols=216 Identities=34% Similarity=0.541 Sum_probs=181.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i 76 (239)
T cd03296 2 SIEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNV 76 (239)
T ss_pred EEEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccce
Confidence 3789999999964 469999999999999999999999999999999999999999999999999876543 25689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+|++|+|.+|. .|++||+.++.... +.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 77 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~ 149 (239)
T cd03296 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA-----KVHELLKLV--QLDWLADRYPAQLSGGQRQRVALAR 149 (239)
T ss_pred EEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 99999998885 69999999764211 1111111 122333333 4555556667889999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|++.+|++|||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 150 ALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999999999988753 6899999999998754 999999999999999999998754
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=369.40 Aligned_cols=220 Identities=31% Similarity=0.552 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----CCHHH
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~ 457 (1178)
++++|++++|+... ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996432 1469999999999999999999999999999999999999999999999999863 34556
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHH
Q 001041 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~ 532 (1178)
.|++|+||+|+| .+|+.|++|||.|+... .+.++.++. +.+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV--GLPEELLARSPFELSGGQMRRVA 155 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCChhhhhCCcccCCHHHHHHHH
Confidence 778999999998 68889999999986321 233322211 12223332 443 2335667889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|||||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 235 (290)
T PRK13634 156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235 (290)
T ss_pred HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999885 599999999999999999999875
Q ss_pred C
Q 001041 610 D 610 (1178)
Q Consensus 610 ~ 610 (1178)
.
T Consensus 236 ~ 236 (290)
T PRK13634 236 D 236 (290)
T ss_pred C
Confidence 4
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=377.23 Aligned_cols=217 Identities=32% Similarity=0.549 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.+
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999963 4589999999999999999999999999999999999999999999999999877665 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++.+|. .||+|||.|+... .+.+ ++.++++.. |++........+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMV-----------QLEEFAQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHHHHH
Confidence 99999999995 5999999987431 1222 233333333 4444455566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988764 789999999999865 599999999999999999999988765
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 444
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=357.15 Aligned_cols=217 Identities=26% Similarity=0.471 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 369999999999999999999999999999999999999999999999999988776554 5679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|+||++.+|.. |++||+.++.......+.... +.+.++.++ +++........+||||||||++||||++.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998875 999999876432211111111 111222221 2334455667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999998875 47899999999998765 99999999999999999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=375.18 Aligned_cols=221 Identities=32% Similarity=0.536 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 469999999999999999999999999999999999999999999999999987654 35689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+||+|++.+|. .|++||+.|+... .+.++..+ .+.+.++.+ |++.........||||||||++|||
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAr 149 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALAR 149 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 6999999987431 12222111 112223332 4444556667899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
||+++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 150 AL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~ 229 (353)
T PRK10851 150 ALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPA 229 (353)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999988764 6899999999998765 99999999999999999999987754
Q ss_pred chH
Q 001041 613 GAY 615 (1178)
Q Consensus 613 ~~~ 615 (1178)
..|
T Consensus 230 ~~~ 232 (353)
T PRK10851 230 TRF 232 (353)
T ss_pred chH
Confidence 444
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=366.08 Aligned_cols=212 Identities=31% Similarity=0.557 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.+...+++++
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 24699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+| .++..|++||+.|+... .+. +++..+++.+++ ..........||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L-----------~~~~~~~~~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRM-----------WDFRDKPPYHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HHHhcCChhhCCHHHHHHHHHH
Confidence 9999998 67889999999986321 222 223333333333 3334445568999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999998875 4789999999999985 5999999999999999998764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=376.91 Aligned_cols=223 Identities=30% Similarity=0.490 Sum_probs=187.7
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC--CcEEECCeecCCCCHHHH
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~--G~i~i~g~~~~~~~~~~~ 458 (1178)
.+.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.++|.++.+.+..
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~-- 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHH--
Confidence 367999999999963 369999999999999999999999999999999999999999 9999999999876653
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
++.|+||+|++.+|. .||+|||.|+... .+.++... .+.+.++.+ |++........+||||||||++|||
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLAR 150 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIAR 150 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHH
Confidence 468999999999995 5999999986421 22222221 112233333 5555566777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc---CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 151 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p 230 (362)
T TIGR03258 151 AIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230 (362)
T ss_pred HHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 99999999999999999999999999999987654 689999999999875 49999999999999999999998875
Q ss_pred CchH
Q 001041 612 EGAY 615 (1178)
Q Consensus 612 ~~~~ 615 (1178)
...|
T Consensus 231 ~~~~ 234 (362)
T TIGR03258 231 ADGF 234 (362)
T ss_pred CcHH
Confidence 4443
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=366.46 Aligned_cols=216 Identities=31% Similarity=0.562 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 48999999999642 34699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+| .++..|++|||.++... .+.+ ++.++++.. |++..+......||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQV-----------GMEDFLNREPHRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHc-----------CChhhhhCCcccCCHHHHHHHHHH
Confidence 9999998 46688999999875321 1222 233333333 344444555678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999988764 6899999999999988999999999999999999988754
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=358.57 Aligned_cols=213 Identities=29% Similarity=0.490 Sum_probs=190.5
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH
Q 001041 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 379 ~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
...+.|+++|+++.+ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|.+|+|.++|
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 344569999999962 3599999999999999999999999999999999999999999999998
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|+|++|++++++.|++||+.++.. ....++...++.+++.+.+..+|.+.++.+++.+.+||||||||++||||++
T Consensus 99 --~i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~ 175 (282)
T cd03291 99 --RISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVY 175 (282)
T ss_pred --EEEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 5999999999999999999998643 2344556667777888889999999999999999999999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHH-HHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++|++|||||||++||+.+...+.+. ++.+.+++|+|++||+++.+..||++++|++|++++.|+++++.+.
T Consensus 176 ~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 248 (282)
T cd03291 176 KDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL 248 (282)
T ss_pred cCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999998888765 4555567899999999999988999999999999999999998764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=350.35 Aligned_cols=200 Identities=34% Similarity=0.553 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
++++|++++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999965311 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+|++|+|++|+.|++||+.++.. ..+++.+++++.+++.+++..+|.|+++.+++.+.+||||||||++||||++.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998643 4456677788888888999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHH-HHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 542 RILLLDEATSALDAESEKVVQE-ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~-~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
+++||||||++||+++.+.+.+ .++... +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999887776 455553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=359.79 Aligned_cols=218 Identities=34% Similarity=0.573 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999741 46999999999999999999999999999999999999999999999999998888777888999
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccc--hhcCCCCCCChHHHHHHHHHHHhc
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDT--LVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t--~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
|+||+|.+|. .|++||+.++... .+.++.. ..+.+.++.+ |+.. ...+...+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999998885 7999999875211 1111111 1122334443 4443 456677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999988753 789999999999875 5999999999999999999988654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=360.52 Aligned_cols=215 Identities=33% Similarity=0.572 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC---HHHHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r~ 460 (1178)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 468999999964 146999999999999999999999999999999999999999999999999988776 456788
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
.++|+||++.+|. .|++||+.++.... .++.. ..+.+.++.+ |+.......+.+||||||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 150 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEK------QRALAALERV--GLLDKAYQRADQLSGGQQ 150 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHH------HHHHHHHHHc--CChhhhCCCcccCCHHHH
Confidence 9999999998876 79999998753210 11111 1122333333 455556677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++++|++|||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 230 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPA 230 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHH
Confidence 99999999999999999999999999999999999998875 3789999999999987 59999999999999999998
Q ss_pred HHh
Q 001041 606 KLV 608 (1178)
Q Consensus 606 ~l~ 608 (1178)
++.
T Consensus 231 ~~~ 233 (241)
T cd03256 231 ELT 233 (241)
T ss_pred Hhh
Confidence 863
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=368.48 Aligned_cols=220 Identities=29% Similarity=0.493 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC---------
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--------- 452 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--------- 452 (1178)
|+++|++++|++.. ..++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.+...
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1369999999999999999999999999999999999999999999999877532
Q ss_pred ---------------CCHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc
Q 001041 453 ---------------FQLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID 513 (1178)
Q Consensus 453 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~ 513 (1178)
.+...+|++|+||+|+| .+|..||+|||.|+... .+.++..+. +.+.++.+ |++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~ 155 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV--GLD 155 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCC
Confidence 13456788999999987 67888999999986422 223222211 11223332 453
Q ss_pred -chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEE
Q 001041 514 -TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMI 590 (1178)
Q Consensus 514 -t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i 590 (1178)
........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+. .||+|
T Consensus 156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv 235 (305)
T PRK13651 156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235 (305)
T ss_pred hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEE
Confidence 34567778999999999999999999999999999999999999999999998764 4789999999999875 59999
Q ss_pred EEEeCCEEEEecChhHHhcC
Q 001041 591 AVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 591 ~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++|++|++++.|+++++.++
T Consensus 236 ~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 236 IFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred EEEECCEEEEECCHHHHhcC
Confidence 99999999999999998764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=332.24 Aligned_cols=220 Identities=26% Similarity=0.439 Sum_probs=191.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1178)
.++++|++..|+. ..+|+++||++++||+++++||||+|||||+++|+|+.++.+|+|.++|.|+...+++.. |..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 4789999999964 469999999999999999999999999999999999999999999999999999988764 678
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||||.-.+| +-||+||+.+|.....+++.+. ..+++..+-+| -+....+.++.+|||||+|.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhccccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 99999999999 5799999998743322211111 11334455666 467778889999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|++|+|||||.+|-|.-.+.|.+.|+++.+ +-||++|.++..... -+||.+||++|+|+..|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999874 459999999999865 5999999999999999999999876
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=357.81 Aligned_cols=220 Identities=33% Similarity=0.543 Sum_probs=183.5
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1178)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996431 12699999999999999999999999999999999999999999999999998876544 347
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+.++|+||+|.+|. .|++||+.++... .+..+.. ..+.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHH
Confidence 78999999999986 6999999875321 1111111 1122344444 55555666778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999988753 7899999999999865 999999999999999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=356.13 Aligned_cols=203 Identities=30% Similarity=0.512 Sum_probs=169.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1178)
++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 24699999999999999999999999999999999999999999999999998776543 3678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+++|++|+|.+|. .|++||+.++... .. ++++.++++..+ +.........+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVG-----------LEGKAHALPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHHHHHH
Confidence 8999999998885 6999999875211 11 223333343333 3333445556899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
|||++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998764 37899999999999875 999999999975
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=365.52 Aligned_cols=218 Identities=33% Similarity=0.524 Sum_probs=180.0
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH----hc
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RK 460 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~ 460 (1178)
.++|+++.|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 468999999999999999999999999999999999999999999999999987765443 35
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLF-TGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+++|+||++.+| ..|++||+.++... ... +++.++++.. |++..+.....+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV-----------GLEGWEHKYPDELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCCcccCCHHHHHHHHH
Confidence 799999999988 57999999875311 111 2223333333 44444455567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999875 4999999999999999999999765
Q ss_pred CCchHH
Q 001041 611 PEGAYS 616 (1178)
Q Consensus 611 ~~~~~~ 616 (1178)
+...|.
T Consensus 252 ~~~~~~ 257 (269)
T cd03294 252 PANDYV 257 (269)
T ss_pred cCcHHH
Confidence 444333
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=355.69 Aligned_cols=215 Identities=23% Similarity=0.471 Sum_probs=178.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|+++.|+.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 4789999999642 146999999999999999999999999999999999999999999999999987543 56677899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.++ ..|++||+.++.. ....++..+ .+.+.++.+ |+.........+||||||||++||||++.+
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGG 151 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcC
Confidence 999999888 6899999986421 112211111 112223322 333334455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 152 PSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999988777999999999999865 999999999999999998765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=359.26 Aligned_cols=220 Identities=30% Similarity=0.523 Sum_probs=180.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH---HHHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1178)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 679999999962 2469999999999999999999999999999999999999999999999999877654 34678
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCCCH--HHH---HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDATT--EEI---RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~--~~~---~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+++|+||++.+|. .|++||+.++...... ... ........+.+.++.+ |++........+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 8999999998885 6999999875321100 000 0000011122333333 555556677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHh
Confidence 999999999999999999999999999999988753 689999999999985 5999999999999999999886
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=365.46 Aligned_cols=219 Identities=26% Similarity=0.525 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1178)
.|+++|++++|+. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 246999999999999999999999999999999999999999999999999984 344567888
Q ss_pred ceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 461 KIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 461 ~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+++|+||+| .++..|++||+.++... .+.++.++. +.+.++.+ |+.........+||||||||++||||
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC--CChhhhhCCcccCCHHHHHHHHHHHH
Confidence 999999998 57889999999875321 222222111 11222222 45555567788999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999988764 789999999999987 5999999999999999999998764
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=376.20 Aligned_cols=214 Identities=25% Similarity=0.468 Sum_probs=186.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|.+|+|.++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999963 4699999999999999999999999999999999999999999999999999999988899999
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
+||+|++.+ ++.|++||+.++...+ . .++++++++..+ +.........+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vg-----------l~~~~~~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTG-----------VAQFADRPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHH
Confidence 999999987 5889999999874211 1 123344444443 33334455678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+|||||+++|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+. .||++++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999998875 4789999999999985 599999999999999999999876
Q ss_pred C
Q 001041 610 D 610 (1178)
Q Consensus 610 ~ 610 (1178)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=361.52 Aligned_cols=219 Identities=31% Similarity=0.478 Sum_probs=182.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecC--CCCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK--EFQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~--~~~~ 455 (1178)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++| ++|+|.++|.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4889999999963 3699999999999999999999999999999999999987 4999999999987 4555
Q ss_pred HHHhcceEEEcCCCCCCcc-cHHHHHhcCCCC----CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDD----ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~----~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
..+|++++|++|++.+|.. |++||+.++... ...+ ++..+++..++.+ .+.........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWD-------EVKDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCcc-------chhhhhccChhhCCHH
Confidence 6678899999999999864 999999875311 0122 2222222222211 1123456677899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999999765 9999999999999999999
Q ss_pred HHhcCC
Q 001041 606 KLVEDP 611 (1178)
Q Consensus 606 ~l~~~~ 611 (1178)
++.+.+
T Consensus 234 ~~~~~~ 239 (253)
T PRK14267 234 KVFENP 239 (253)
T ss_pred HHHhCC
Confidence 987653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=361.12 Aligned_cols=220 Identities=35% Similarity=0.502 Sum_probs=184.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1178)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 469999999999999999999999999999999999987 589999999998863 45
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
...+|++++|++|+|.+|..|++||+.++... .. ++++.++++..++ ..+++........+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAV-------WDECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCC-------cchhhhhhCCCcccCCHHHHH
Confidence 66778899999999999988999999976421 11 1222333333322 123344556677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeC-----------CE
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHR-----------GK 597 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~-----------G~ 597 (1178)
|++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 99999999999999999999999999999999999998876789999999999886 4999999996 67
Q ss_pred EEEecChhHHhcCC
Q 001041 598 IVEKGTHSKLVEDP 611 (1178)
Q Consensus 598 i~~~g~~~~l~~~~ 611 (1178)
+++.|+++++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999987653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=368.87 Aligned_cols=229 Identities=28% Similarity=0.430 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCC----------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC
Q 001041 383 DIELRDVYFSYPARP----------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~----------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1178)
-++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996421 2468999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcceEEEcCCC--CCC-cccHHHHHhcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCC
Q 001041 453 FQLQW---IRKKIGLVSQEP--VLF-TGSIKDNIAYGK----DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGT 521 (1178)
Q Consensus 453 ~~~~~---~r~~i~~v~Q~~--~l~-~~ti~~ni~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~ 521 (1178)
++... +|++|+||+|+| .++ ..||.|||.++. +..+.++..+.. .+.++.+ |++ ........
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v--gl~~~~~~~~p~ 160 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV--GLLPNLINRYPH 160 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc--CCChHHhcCCcc
Confidence 87543 577899999999 466 589999997532 112333322211 1222222 332 23566778
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+||||||||++|||||+.+|++||+||||++||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|+|
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999988754 7899999999999975 999999999999
Q ss_pred EEecChhHHhcCCCchHHHH
Q 001041 599 VEKGTHSKLVEDPEGAYSQL 618 (1178)
Q Consensus 599 ~~~g~~~~l~~~~~~~~~~~ 618 (1178)
+|.|+++++..++...|.+.
T Consensus 241 ve~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 241 VELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred EEEcCHHHHHcCCCCHHHHH
Confidence 99999999988766667653
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=376.60 Aligned_cols=221 Identities=29% Similarity=0.483 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4889999999963 4599999999999999999999999999999999999999999999999999876653 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .|++||+.|+... .+.++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~ 150 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999985 6999999986431 12221111 112223333 45555566667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++...+...|
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 789999999999875 499999999999999999999987654333
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=356.83 Aligned_cols=216 Identities=29% Similarity=0.533 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 678999999963 46999999999999999999999999999999999999999999999999988766544 45899
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVL-FTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l-~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.+ +..|++||+.++... ...++... .+.+.++.+ |++........+||||||||++||||++++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999987 468999999865321 12221111 123344444 666667778889999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999998875 37899999999999988999999999999999999888754
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=360.09 Aligned_cols=220 Identities=30% Similarity=0.476 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|+++.|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 369999999999999999999999999999999999987 3 58999999999863 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CHHHH----HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTEEI----RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~~~~----~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|+.++|+||+|.+|..|++||+.++.... .+++. ..+++..++.+ .+.........+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWD-------EVKDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhhhhCCcccCCHHHH
Confidence 56788999999999999899999998753211 12221 22222222211 112345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999988778899999999998864 999999999999999999998
Q ss_pred hcCCC
Q 001041 608 VEDPE 612 (1178)
Q Consensus 608 ~~~~~ 612 (1178)
.+++.
T Consensus 242 ~~~~~ 246 (259)
T PRK14274 242 FSNPD 246 (259)
T ss_pred hhCCC
Confidence 76543
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=358.74 Aligned_cols=220 Identities=32% Similarity=0.498 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~~~~ 457 (1178)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4889999999963 3699999999999999999999999999999999999974 6999999999998888778
Q ss_pred HhcceEEEcCCCCCC-cccHHHHHhcCCCCC----CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 458 IRKKIGLVSQEPVLF-TGSIKDNIAYGKDDA----TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~----~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
+|+.|+|++|+|.++ ..|++||+.++.... .. +++.++++..++.+ .++........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWD-------EVKDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCCcccCCHHHH
Confidence 889999999999755 689999998753211 11 22233333333211 112334566678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999988777899999999999885 5999999999999999999998
Q ss_pred hcCCC
Q 001041 608 VEDPE 612 (1178)
Q Consensus 608 ~~~~~ 612 (1178)
.+.+.
T Consensus 233 ~~~~~ 237 (250)
T PRK14247 233 FTNPR 237 (250)
T ss_pred HcCCc
Confidence 76543
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=355.95 Aligned_cols=216 Identities=25% Similarity=0.475 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i 462 (1178)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .+..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 468999999963 46999999999999999999999999999999999999999999999999988776654 35679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|++.+|.+ |++||+.++.+. ...++... .+.+.++.+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999998875 999999875321 11111111 123344444 66666777788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998775 47899999999987755 99999999999999999988754
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=362.79 Aligned_cols=217 Identities=31% Similarity=0.514 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.....++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|..+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743334699999999999999999999999999999999999999999999999999887777888899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCC--CCCHHHH----HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEPV--LFTGSIKDNIAYGKD--DATTEEI----RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~~----~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+|. ++..|+.|||.++.. ....++. ..+++.+ |+..........||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV-----------NMLDFKTREPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHHHHHH
Confidence 99999983 678899999987532 1233322 2333333 333334456678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988754 7899999999999988999999999999999999998764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=359.53 Aligned_cols=223 Identities=33% Similarity=0.505 Sum_probs=183.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|+. .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999998854 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|+.++|++|++.+|..|++||+.++.... ..+ ++..+++..++++ ...........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK-------ETKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc-------chHHHhccChhhCCHHHH
Confidence 56788899999999999999999998753211 111 2222222222211 112234567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999999765 999999999999999999998
Q ss_pred hcCCCchH
Q 001041 608 VEDPEGAY 615 (1178)
Q Consensus 608 ~~~~~~~~ 615 (1178)
...+...|
T Consensus 234 ~~~~~~~~ 241 (251)
T PRK14251 234 FIAPKKQI 241 (251)
T ss_pred HhCCCCHH
Confidence 76544333
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=361.55 Aligned_cols=220 Identities=30% Similarity=0.595 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 58999999999632 35699999999999999999999999999999999999999999999999999877777888899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|+| .++..|++||+.++... .+.++.+. .+.+.++.+ |++........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLA 158 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHH
Confidence 9999998 45678999999875321 22332221 112233333 4555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 159 ~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 159 LNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 4899999999999888999999999999999999888654
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=354.34 Aligned_cols=214 Identities=26% Similarity=0.456 Sum_probs=178.5
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---H
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~ 458 (1178)
.++++|++++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 489999999997432 146999999999999999999999999999999999999999999999999998887643 3
Q ss_pred h-cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 459 R-KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 459 r-~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
| +.++|++|+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV--GLEHRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHH
Confidence 3 67999999998886 499999987421 112221111 112333333 555566677789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
||++.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+..+|++++|++|++++.|+
T Consensus 158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999998874 3789999999999998889999999999998775
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=360.76 Aligned_cols=220 Identities=33% Similarity=0.502 Sum_probs=185.4
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--C
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--F 453 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~ 453 (1178)
.+.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| .+|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 456999999999963 3699999999999999999999999999999999999874 79999999999864 3
Q ss_pred CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 454 QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 454 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
+...+|++++|++|++.+|..|++||+.++.... .. +++.++++..++.+ .+.+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD-------EVKDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCh-------hHHHHhhCCcccCCHH
Confidence 4567788999999999999889999998753211 11 22333333333222 2234567778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 99999999999999999999999999999999999999998877889999999999876 59999999999999999999
Q ss_pred HHhcC
Q 001041 606 KLVED 610 (1178)
Q Consensus 606 ~l~~~ 610 (1178)
++.++
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 98765
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=351.65 Aligned_cols=207 Identities=36% Similarity=0.607 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999963 469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||+|.++. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~ 148 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALARE 148 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998875 6999999875321 12211111 112233333 455555666678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 149 PSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999988753 7899999999998765 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=359.66 Aligned_cols=219 Identities=30% Similarity=0.471 Sum_probs=184.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1178)
..|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|.|+++ |++|+|.++|.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999996 479999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...+|+.++|++|++.+|..|++||+.++... ... +++.++++..++.+ +.+...+....+|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD-------QVKDDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc-------hhhhhhcCCcccCCHHH
Confidence 55678899999999999989999999875321 111 22233333333322 22345667788999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|||++||||++++|+++||||||++||+.+.+.+.+.|+++.++.|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999998877789999999999885 599999999999999999999
Q ss_pred HhcC
Q 001041 607 LVED 610 (1178)
Q Consensus 607 l~~~ 610 (1178)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 8764
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=352.07 Aligned_cols=211 Identities=27% Similarity=0.524 Sum_probs=175.6
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
++++|++++|+.... .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974311 269999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|+|.+|. .|++||+.+.... ...++... .+.+.++.+ |++........+||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~ 153 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVH 153 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhc
Confidence 99999999887 5999999764221 12222111 112333333 55556667778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
+|+++||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 154 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 154 DPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999998874 47899999999998765 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=356.50 Aligned_cols=220 Identities=35% Similarity=0.537 Sum_probs=183.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~ 454 (1178)
+.|+++|+++.|++ .++++|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 3699999999999999999999999999999999998763 68999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...+|++++|++|+|.+|..|+++|+.++... ... +++.++++..++.+ ++.........+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD-------EVKDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhHHHHhcCCCCCCHHH
Confidence 55678899999999999999999999875321 111 22222333332211 22334566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|||++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999888778899999999998765 99999999999999999998
Q ss_pred HhcCC
Q 001041 607 LVEDP 611 (1178)
Q Consensus 607 l~~~~ 611 (1178)
+..++
T Consensus 232 ~~~~~ 236 (250)
T PRK14240 232 LFTNP 236 (250)
T ss_pred HHhCC
Confidence 87543
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=372.85 Aligned_cols=223 Identities=32% Similarity=0.537 Sum_probs=186.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+.+|++|+|.++|.++.+.+. .++.
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 469999999999999999999999999999999999999999999999999987765 3568
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
|+||+|++.+|. .|++|||.|+... .+..+..+ .+.+.++.+ |+.........+||||||||++|||||+
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~ 165 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLA 165 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999999995 5999999987431 22222211 112223333 4555556667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
++|++||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++...|
T Consensus 166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 166 KRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 99999999999999999999999888877643 689999999999865 599999999999999999999988765444
Q ss_pred H
Q 001041 616 S 616 (1178)
Q Consensus 616 ~ 616 (1178)
.
T Consensus 246 ~ 246 (377)
T PRK11607 246 S 246 (377)
T ss_pred H
Confidence 3
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=366.90 Aligned_cols=217 Identities=24% Similarity=0.456 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5899999999963 46999999999999999999999999999999999999999999999999987654 3568899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
||+||+|.++. .|++||+.+.... .+..+.... +.+.++.+ |+.........+||||||||++|||||+.
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~ 155 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVN 155 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence 99999998885 7999999863221 122222211 11222222 33333344446899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|++|+|||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 156 DPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 999999999999999999999999998875 47899999999999865 999999999999999999998654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=339.37 Aligned_cols=178 Identities=34% Similarity=0.670 Sum_probs=164.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+.. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999743 24699999999999999999999999999999999999999999999999988766 566788999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|++|+.|++||+ ..+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 468999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
+||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998877789999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=353.65 Aligned_cols=208 Identities=36% Similarity=0.533 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH----H
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW----I 458 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~----~ 458 (1178)
++++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 46899999996421 146999999999999999999999999999999999999999999999999988776432 4
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 459 RKKIGLVSQEPVLFTG-SIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+++++|++|+|.+|.. |++||+.++.... ..++.. ..+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5689999999998875 9999998754211 111111 1123344444 5665666777899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
|++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999988764 7899999999998888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=355.75 Aligned_cols=219 Identities=31% Similarity=0.523 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|. +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999987 6999999998864 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|+.++|++|+|.+|..|++||+.++... . ..++ +..+++..++. +++.......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALW-------DEVKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCc-------hhhhhHhhCCcccCCHHHH
Confidence 5678899999999999989999999875321 1 1111 22222222222 2233456778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999887667899999999999876 899999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14249 234 FSRP 237 (251)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=358.45 Aligned_cols=219 Identities=35% Similarity=0.511 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc---CCC--CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDP--QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~---~~~--~~G~i~i~g~~~~~~--~~ 455 (1178)
.++++|+++.|+. +++|+|+||++++||+++|+|+||||||||+++|.|+ ++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4889999999963 4699999999999999999999999999999999997 454 489999999998754 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|++++|+||+|.+|..|++||+.++... . ..+ +++++++.+++ ++.+++.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAAL-------WDEVKDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCC-------CcchhhhhhCCcccCCHHHH
Confidence 5678899999999999989999999875321 1 111 22222222222 22223455677889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 4999999999999999999999
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
.+++
T Consensus 233 ~~~~ 236 (250)
T PRK14245 233 FTNP 236 (250)
T ss_pred hcCC
Confidence 7653
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=360.51 Aligned_cols=219 Identities=28% Similarity=0.472 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1178)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998776543 356
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
++++|++|++.+|.. |++||+.++... .+.++... .+.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrv~lar 156 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAV--GLRGAAKLMPSELSGGMARRAALAR 156 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 789999999999875 999999864211 12211111 111223332 4444455566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 157 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 157 AIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCC
Confidence 99999999999999999999999999999988753 6899999999998865 9999999999999999999987653
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=358.15 Aligned_cols=221 Identities=32% Similarity=0.492 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4699999999999999999999999999999999999975 799999999988643 23
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
..+|+.++|++|++.+|..|++||+.++... .+.++ +.++++.+++.+ ...........+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD-------ETSDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc-------chhhhhcCChhhCCHHHHH
Confidence 4567889999999999999999999875321 12222 222232222211 1123445667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999987667999999999999865 9999999999999999999987
Q ss_pred cCCCc
Q 001041 609 EDPEG 613 (1178)
Q Consensus 609 ~~~~~ 613 (1178)
+++..
T Consensus 242 ~~~~~ 246 (258)
T PRK14268 242 HNPRE 246 (258)
T ss_pred cCCCC
Confidence 65433
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=359.92 Aligned_cols=218 Identities=33% Similarity=0.588 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC-HHHHhcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~r~~i 462 (1178)
++++|++++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 246999999999999999999999999999999999999999999999999998765 35678899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|+|. ++..|++|||.++... .+.++..+. +.+.++.+ |++.........||||||||++||||++
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence 99999985 5678999999876321 122222111 11223333 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999998765 47899999999999988999999999999999999988654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=353.47 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
.++++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 4889999999963 46999999999999999999999999999999999999999999999999998877654 5778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
++|++|++.+|. .|++||+.++......++....+ .+.++.++ +++.........||||||||++||||++++
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 999999999887 59999998754322222222111 11222221 122223446678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|+|+||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999998765 4789999999999765 599999999999999999999864
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=358.00 Aligned_cols=219 Identities=31% Similarity=0.480 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999963 469999999999999999999999999999999999864 689999999999864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..++++++|++|++.+|.+|++||+.++.... .. +.+..+++..++. .++.........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALW-------DEVKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCC-------cchHHHHhcCcccCCHHHH
Confidence 56778999999999999999999998753211 11 1122222222221 1122345677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998876789999999999876 5999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
..++
T Consensus 251 ~~~~ 254 (268)
T PRK14248 251 FTSP 254 (268)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=363.67 Aligned_cols=223 Identities=28% Similarity=0.495 Sum_probs=182.4
Q ss_pred cccEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----C-
Q 001041 381 RGDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----F- 453 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~- 453 (1178)
.+.|+++|++++|+++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35699999999997432 1359999999999999999999999999999999999999999999999998752 2
Q ss_pred CHHHHhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 001041 454 QLQWIRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1178)
Q Consensus 454 ~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqk 528 (1178)
+...+|++|+|++|+| .+|..|++||+.++... ...++....+ .+.++.+ |+. ........+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3456788999999998 46788999999875321 2222222111 1222222 332 234566788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999988753 789999999999875 59999999999999999999
Q ss_pred HHhcC
Q 001041 606 KLVED 610 (1178)
Q Consensus 606 ~l~~~ 610 (1178)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 88654
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=357.15 Aligned_cols=219 Identities=29% Similarity=0.454 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CC---CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DP---QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~---~~G~i~i~g~~~~~~--~~ 455 (1178)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ .| ++|+|.++|.++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 36999999999999999999999999999999999985 36 489999999998643 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC---CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD---DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~---~~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|+.++|+||+|.+|+.|++||+.++.. ....+ ++..+++.+++.+ ++.+..+....+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD-------EVKDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch-------hHHHHHhcCcccCCHHHH
Confidence 567788999999999999999999986521 11111 2222233322211 223455677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988776789999999999875 4999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
.+.+
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 7653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=349.00 Aligned_cols=198 Identities=29% Similarity=0.519 Sum_probs=167.6
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|+
T Consensus 2 ~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~ 76 (205)
T cd03226 2 IENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYV 76 (205)
T ss_pred cccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEE
Confidence 67999999641 469999999999999999999999999999999999999999999999998754 4566789999
Q ss_pred cCCC--CCCcccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 466 SQEP--VLFTGSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 466 ~Q~~--~l~~~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|+| .++..|++||+.++.+... .+++.++++..++. .........||||||||++||||++.+|
T Consensus 77 ~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~laral~~~p 145 (205)
T cd03226 77 MQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLY-----------ALKERHPLSLSGGQKQRLAIAAALLSGK 145 (205)
T ss_pred ecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-----------hhcCCCchhCCHHHHHHHHHHHHHHhCC
Confidence 9998 4678899999987643222 23444444444433 3334455689999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 146 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 146 DLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999998874 57899999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=358.94 Aligned_cols=220 Identities=27% Similarity=0.490 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999743 24699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|+|. ++..|+++|+.++... ...++..+. +.+.++.+ |+.........+||||||||++||||++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~ 158 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV--DMLERADYEPNALSGGQKQRVAIAGVLA 158 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 99999995 4567899999876322 122222111 11122222 3333445566789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 159 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 159 LNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999999988753 6899999999999888999999999999999999988654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=348.93 Aligned_cols=203 Identities=27% Similarity=0.501 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ .++++|+||++++| +++|+||||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 478999999963 36999999999999 99999999999999999999999999999999999988766 66788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKD--DAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~--~~~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|+|.+|.. |++||+.+... ..+ .+++.++++..++. ........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-----------DRAKKKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-----------HHHhCchhhCCHHHHHHHHHHHH
Confidence 99999998875 99999986321 111 12233334443333 22334556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998877799999999999986 49999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=361.31 Aligned_cols=217 Identities=26% Similarity=0.488 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCC---CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC-HHHH
Q 001041 383 DIELRDVYFSYPARP---NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-LQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~---~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-~~~~ 458 (1178)
.++++|++++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987654 3557
Q ss_pred hcceEEEcCCCC--CCcccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
|++++|+||+|. ++..|+.+|+.|+... .+. +++..+++.+ |++........+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKV-----------GMYEYRRHAPHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHC-----------CCHhHhhCCcccCCHHHHHH
Confidence 889999999984 6777999999986321 122 2233333333 44444555667999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHh
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
++||||++++|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999998889999999999999999999987
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
..
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 54
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=350.87 Aligned_cols=209 Identities=29% Similarity=0.523 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1178)
++++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996422 246999999999999999999999999999999999999999999999999998876544 33
Q ss_pred -cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 460 -~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
++++|++|+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999998884 699999987421 112111111 112333333 5555566677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1178)
|++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999988753 68999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=351.90 Aligned_cols=217 Identities=31% Similarity=0.551 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC--CHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF--QLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~--~~~~~r~~ 461 (1178)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4699999999999999999999999999999999999999999999999998764 33566788
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|++.++. .|++||+.++.. ..+.++..+ .+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998885 699999987531 112222111 122344443 666666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+++|+++||||||++||+++...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998765 47899999999999865 999999999999999999988764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=355.51 Aligned_cols=222 Identities=29% Similarity=0.474 Sum_probs=183.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCcEEECCeecCCC--C
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKEF--Q 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~~--~ 454 (1178)
+.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 469999999999999999999999999999999999986 3 589999999998643 4
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
...+|++++|+||++.+|. .|++||+.++... .+. +++.+.++..++.+.+ ....+....+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV-------KDRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hHHhhCCcCcCCHH
Confidence 4567889999999999887 6999999864211 111 2223333333322211 22345667889999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||||++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998877789999999999985 59999999999999999999
Q ss_pred HHhcCCCc
Q 001041 606 KLVEDPEG 613 (1178)
Q Consensus 606 ~l~~~~~~ 613 (1178)
++...+..
T Consensus 233 ~~~~~~~~ 240 (252)
T PRK14256 233 KIFTTPEK 240 (252)
T ss_pred HHHhCCCc
Confidence 98765443
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=356.24 Aligned_cols=220 Identities=31% Similarity=0.461 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 369999999999999999999999999999999999976 378999999998853 455
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC--C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
..+|++++|++|++.+|+.|++||+.++.... . ++++..+++.+++.+++ +......+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV-------KDKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhH-------HHHhcCCcccCCHHHHHH
Confidence 67788999999999999889999998754211 1 12233344444443332 223466778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEe---------CCEEEE
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH---------RGKIVE 600 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~---------~G~i~~ 600 (1178)
++||||++++|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999988777899999999998765 99999998 899999
Q ss_pred ecChhHHhcCCC
Q 001041 601 KGTHSKLVEDPE 612 (1178)
Q Consensus 601 ~g~~~~l~~~~~ 612 (1178)
.|+++++.+.+.
T Consensus 240 ~~~~~~~~~~~~ 251 (264)
T PRK14243 240 FDRTEKIFNSPQ 251 (264)
T ss_pred eCCHHHHHhCCC
Confidence 999999976543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=360.28 Aligned_cols=217 Identities=31% Similarity=0.556 Sum_probs=185.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---CcEEECCeecCCCCHHHH
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---GEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~---G~i~i~g~~~~~~~~~~~ 458 (1178)
+.|+++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 358999999999643 2469999999999999999999999999999999999999987 899999999987777778
Q ss_pred hcceEEEcCCCC--CCcccHHHHHhcCCCC--CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 459 RKKIGLVSQEPV--LFTGSIKDNIAYGKDD--ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 459 r~~i~~v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
+++++|++|+|. ++..|++|||.++... .+.++ +..+++.+ |++........+||||||||
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LS~G~~qr 151 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV-----------GMLDYIDSEPANLSGGQKQR 151 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHH
Confidence 889999999994 6689999999876322 22322 23333333 44444566668999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHh
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
++||||++.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999999889999999999999999999886
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
..
T Consensus 232 ~~ 233 (282)
T PRK13640 232 SK 233 (282)
T ss_pred cC
Confidence 54
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=352.16 Aligned_cols=214 Identities=25% Similarity=0.496 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i 462 (1178)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+... .+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 468999999963 36999999999999999999999999999999999999999999999999998877654 46689
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|++|++.+|.. |++||+.++.......+... ..+.++.+ ++++........+||||||||++||||++++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~------~~~~l~~~-~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 150 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKI------PDEIYELF-PVLKEMLGRRGGDLSGGQQQQLAIARALVTRP 150 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHH------HHHHHHHH-HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 999999998875 99999987543221110000 01111111 12334456667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
+++||||||++||+.+.+.+.+.+.+..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 151 ~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 151 KLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 99999999999999999999999988754 6899999999999875 999999999999999999887
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=371.63 Aligned_cols=209 Identities=34% Similarity=0.560 Sum_probs=174.1
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH----hcceEEEcCCCCCCc-c
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI----RKKIGLVSQEPVLFT-G 474 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~-~ 474 (1178)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+...+ |++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988876553 357999999999885 6
Q ss_pred cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 001041 475 SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1178)
Q Consensus 475 ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1178)
|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.+|++|||||||++
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999999976321 12211111 112223332 444455566679999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
||+.+.+.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++..++...|
T Consensus 195 LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 195 LDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 99999999999998874 3789999999999875 599999999999999999999987654444
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=361.45 Aligned_cols=221 Identities=29% Similarity=0.548 Sum_probs=183.0
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHH
Q 001041 383 DIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~ 456 (1178)
.|+++|++++|+... .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhcceEEEcCCC--CCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 001041 457 WIRKKIGLVSQEP--VLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri 531 (1178)
..+..++|++|+| .+|..|++|||.++.. ....++... .+.+.++.+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6678899999998 5778899999987532 122222211 112333333 554 345667789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+||||++.+|++|||||||++||+.+.+.+.+.++++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998875 4789999999999886 599999999999999999998865
Q ss_pred C
Q 001041 610 D 610 (1178)
Q Consensus 610 ~ 610 (1178)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 3
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=355.73 Aligned_cols=219 Identities=32% Similarity=0.540 Sum_probs=183.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC---------
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--------- 454 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--------- 454 (1178)
|+++|++++|+. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 46999999999999999999999999999999999999999999999999887543
Q ss_pred ----HHHHhcceEEEcCCCCCC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 455 ----LQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 455 ----~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
...+|+.++|++|++.+| ..|++||+.++.. ....++... .+.+.++.+ |++........+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 235678899999999888 4899999987421 112221111 123344444 5565667777899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++++|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 789999999999985 599999999999999999
Q ss_pred hhHHhcCCC
Q 001041 604 HSKLVEDPE 612 (1178)
Q Consensus 604 ~~~l~~~~~ 612 (1178)
++++.+.+.
T Consensus 231 ~~~~~~~~~ 239 (252)
T TIGR03005 231 PDEIFRQPK 239 (252)
T ss_pred HHHHhcCCC
Confidence 999876543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=357.91 Aligned_cols=220 Identities=31% Similarity=0.475 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH
Q 001041 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
|+++|+++.|+.. .++++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 1357999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHH
Q 001041 458 ---IRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQ 527 (1178)
Q Consensus 458 ---~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGq 527 (1178)
+|+.|+|++|+|. ++ ..|++||+.++.. ....++.. ..+.+.++.+ |++ ........+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQK-----ARIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999983 44 4799999975321 11111111 1122334443 554 34566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~ 604 (1178)
|||++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 789999999999987 4999999999999999999
Q ss_pred hHHhcC
Q 001041 605 SKLVED 610 (1178)
Q Consensus 605 ~~l~~~ 610 (1178)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=355.95 Aligned_cols=219 Identities=33% Similarity=0.567 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC--------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-------- 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-------- 454 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (250)
T PRK11264 3 AIEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGL 79 (250)
T ss_pred cEEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhH
Confidence 3889999999963 36999999999999999999999999999999999999999999999999986542
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
...+|++++|+||++.+|. .|++||+.++. .....++..+ .+.+.++.+ |++........+||||||||
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qr 152 (250)
T PRK11264 80 IRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV--GLAGKETSYPRRLSGGQQQR 152 (250)
T ss_pred HHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCcchhhCChhhCChHHHHH
Confidence 3456788999999998885 79999998642 1112221111 122334443 55555667778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 153 VAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988754 7899999999999865 9999999999999999999987
Q ss_pred cCC
Q 001041 609 EDP 611 (1178)
Q Consensus 609 ~~~ 611 (1178)
+.+
T Consensus 233 ~~~ 235 (250)
T PRK11264 233 ADP 235 (250)
T ss_pred cCC
Confidence 653
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=357.87 Aligned_cols=220 Identities=31% Similarity=0.528 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCCCC--HH
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEFQ--LQ 456 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~~--~~ 456 (1178)
-+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |.+|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999963 469999999999999999999999999999999999986 46999999999886543 34
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DA--TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~--~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
.+|++++|++|++.+|.+|++||+.++.. .. .. +++..+++..++.+. +.+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE-------LGDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch-------hhhHhhcChhhCCHHHH
Confidence 56889999999999998999999987521 11 11 112222222222111 12345667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888778999999999999865 999999999999999999998
Q ss_pred hcCCCc
Q 001041 608 VEDPEG 613 (1178)
Q Consensus 608 ~~~~~~ 613 (1178)
.+.+..
T Consensus 236 ~~~~~~ 241 (251)
T PRK14244 236 FKNPQS 241 (251)
T ss_pred hcCCCC
Confidence 766433
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-39 Score=355.08 Aligned_cols=219 Identities=29% Similarity=0.490 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+.+| ++|+|.++|.++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4699999999999999999999999999999999998753 489999999998765 45
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
...|+.++|++|+|.+|+.|++||+.++.... ... ++.++++..+ +.+++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAA-------LWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhc-------CchhhHHHhhcChhhCCHHHH
Confidence 66788899999999999899999999763211 111 1222222222 222334556778889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999986 4999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
..++
T Consensus 236 ~~~~ 239 (253)
T PRK14261 236 FENP 239 (253)
T ss_pred HhCC
Confidence 7653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=358.30 Aligned_cols=213 Identities=28% Similarity=0.472 Sum_probs=182.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 3699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCC----------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDA----------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~----------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
+|++|++.++. .|++||+.++.... .++++..+++.+++ +........+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL-----------KPLAHRLVDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC-----------HHHhcCCcccCCHHHHHHH
Confidence 99999987654 59999998753210 11233344444433 3334445568999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 789999999999986 59999999999999999998875
Q ss_pred c
Q 001041 609 E 609 (1178)
Q Consensus 609 ~ 609 (1178)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 4
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=356.33 Aligned_cols=219 Identities=31% Similarity=0.545 Sum_probs=182.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC--------
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-------- 453 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-------- 453 (1178)
+.++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 56999999999963 4699999999999999999999999999999999999999999999999988642
Q ss_pred -----CHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCC
Q 001041 454 -----QLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQL 523 (1178)
Q Consensus 454 -----~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~~l 523 (1178)
....+|++++|+||++.++. .|++||+.++.. .....+... .+.+.++.+ |+.... ......|
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~L 153 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV--GIDERAQGKYPVHL 153 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc--CCChhhhhCCcccC
Confidence 13456789999999999986 599999986421 111111111 112333333 454443 5667899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1178)
|||||||++||||++++|+++||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 233 (257)
T PRK10619 154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEE 233 (257)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999998875 47999999999999885 999999999999999
Q ss_pred cChhHHhcC
Q 001041 602 GTHSKLVED 610 (1178)
Q Consensus 602 g~~~~l~~~ 610 (1178)
|+++++.+.
T Consensus 234 ~~~~~~~~~ 242 (257)
T PRK10619 234 GAPEQLFGN 242 (257)
T ss_pred CCHHHhhhC
Confidence 999998754
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=355.40 Aligned_cols=219 Identities=33% Similarity=0.525 Sum_probs=182.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 4889999999963 4699999999999999999999999999999999999874 899999999988653 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+++.++|++|+|.+|..|++||+.++... ...++ +..+++..++.+. ++........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE-------VKSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCch-------hHHHHhCChhhcCHHHH
Confidence 4567889999999999999999999875311 11111 2223333222211 12345677789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999998877889999999999875 5999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14262 233 VERP 236 (250)
T ss_pred HhCC
Confidence 7653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=346.48 Aligned_cols=203 Identities=26% Similarity=0.458 Sum_probs=173.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++... ...+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 468999999963 4699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||++.++ ..|++||+.++.. ..+++++.++++..++. .........||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-----------DSAKKKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-----------HHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 999999887 5799999987532 12344455555554443 334455678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998765 47899999999999865 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=360.99 Aligned_cols=220 Identities=33% Similarity=0.576 Sum_probs=182.9
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHHH
Q 001041 384 IELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~ 457 (1178)
++++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997432 13699999999999999999999999999999999999999999999999998754 3456
Q ss_pred HhcceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHH
Q 001041 458 IRKKIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 458 ~r~~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~ 532 (1178)
+|+.|+|++|+| .+|..|++||+.++... .+.++.... +.+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 67889999999875321 223222211 12223332 454 2346667889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999988753 7899999999998864 999999999999999999988654
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=357.01 Aligned_cols=222 Identities=27% Similarity=0.469 Sum_probs=184.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 359999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHH-HHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTE-EIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~-~~~~~~~~~~~~~~i~~~--~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
..++++++|++|+|.+|..|++||+.++.. ...++ ..... +.+.++.+ .+++.......+.+||||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEI-----VEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 567889999999999998999999987532 11111 11111 11111111 1234445677788999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
++||||++++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 255 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFS 255 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 99999999999999999999999999999999999888778999999999999865 99999999999999999999876
Q ss_pred CCC
Q 001041 610 DPE 612 (1178)
Q Consensus 610 ~~~ 612 (1178)
++.
T Consensus 256 ~~~ 258 (271)
T PRK14238 256 NPS 258 (271)
T ss_pred CCC
Confidence 543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=354.45 Aligned_cols=219 Identities=32% Similarity=0.488 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5889999999963 4699999999999999999999999999999999999875 789999999998653 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC---CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA---TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~---~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
...|++++|+||++.+|..|++||+.++.... +. +++.++++.+++.+ ++..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD-------EVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHHH
Confidence 56688899999999999999999998753211 11 12233333333221 223345567789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988777899999999998865 999999999999999999998
Q ss_pred hcCC
Q 001041 608 VEDP 611 (1178)
Q Consensus 608 ~~~~ 611 (1178)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14270 234 FLEP 237 (251)
T ss_pred hcCC
Confidence 7653
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=349.28 Aligned_cols=209 Identities=25% Similarity=0.431 Sum_probs=175.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999988653 345677899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|++.++. .|++||+.++... .+. +++.+.++.. |++........+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV-----------GLLEAADRLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHhhCChhhCCHHHHHHHHHHHH
Confidence 9999998886 5999999864211 111 2223333333 33333444557899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
++.+|+++||||||++||+++...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988653 6899999999999865 999999999999999988764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=368.60 Aligned_cols=212 Identities=28% Similarity=0.458 Sum_probs=174.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe----ecCCCCHHHH---h-cceEEEcCCCC
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI----NLKEFQLQWI---R-KKIGLVSQEPV 470 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 470 (1178)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 45899999999999999999999999999999999999999999999996 5666665544 3 57999999999
Q ss_pred CCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001041 471 LFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLD 547 (1178)
Q Consensus 471 l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlD 547 (1178)
+|+ .|++||+.++... .+.++... .+.+.++.+ |++........+||||||||++|||||+.+|+|||||
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~-----~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRK-----RVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 996 7999999986421 12221111 112223332 4444455566789999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 548 EATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
||||+||+.+.+.+++.+.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 99999999999999999988754 789999999999874 59999999999999999999998765444443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=358.29 Aligned_cols=215 Identities=31% Similarity=0.532 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+.+ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 3 ~l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 80 (277)
T PRK13652 3 LIETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFV 80 (277)
T ss_pred eEEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 37899999999632 3599999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEcCCC--CCCcccHHHHHhcCCC--CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEP--VLFTGSIKDNIAYGKD--DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~--~l~~~ti~~ni~~~~~--~~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+| .++..|++||+.++.. ..+.+ ++..+++.. |+..........||||||||++||
T Consensus 81 ~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 81 GLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML-----------GLEELRDRVPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC-----------CChhHhcCCcccCCHHHHHHHHHH
Confidence 9999998 3678899999986532 12222 223333333 333344555678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999988753 789999999999985 5999999999999999999998754
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=363.54 Aligned_cols=230 Identities=31% Similarity=0.483 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCC-------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH
Q 001041 383 DIELRDVYFSYPARP-------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~ 455 (1178)
.|+++|++++|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996421 2469999999999999999999999999999999999999999999999999988865
Q ss_pred H---HHhcceEEEcCCCC--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCCh
Q 001041 456 Q---WIRKKIGLVSQEPV--LFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1178)
Q Consensus 456 ~---~~r~~i~~v~Q~~~--l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSg 525 (1178)
. .+|++|+||+|+|. ++. .|+.+|+..+. .....++.. ..+.+.++.+ |++ .........|||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~p~~LSg 157 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR-----EKALAMMAKV--GLRPEHYDRYPHMFSG 157 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHC--CCChHHhcCCCccCCH
Confidence 3 46788999999993 443 58988886321 111221111 1112233332 332 233556678999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|||||++|||||+.+|++||+||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|
T Consensus 158 Gq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 158 GQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988754 7899999999999975 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHH
Q 001041 603 THSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~ 619 (1178)
+.+++.+++...|.+.+
T Consensus 238 ~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 238 TKEQIFNNPRHPYTQAL 254 (327)
T ss_pred CHHHHhcCCCCHHHHHH
Confidence 99999987666676543
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=352.77 Aligned_cols=221 Identities=25% Similarity=0.455 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1178)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... +..+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 369999999999999999999999999999999999999999999999999887776543 4579
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDDATT--EE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~~~~--~~---~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+|++|++.+|.+ |++||+.++...... .. .........+.+.++.+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999975 999999875321000 00 00001111233444444 56666677778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999988777899999999999875 99999999999999999988864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-39 Score=345.94 Aligned_cols=210 Identities=31% Similarity=0.481 Sum_probs=184.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH----HHHhc
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRK 460 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~ 460 (1178)
.+.|++|+|+.+ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|.
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467899999743 469999999999999999999999999999999999999999999999998876542 23567
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
.++|++|+|.+|+.|++||+.++.+ ...++..++++.+++.+.+..+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999999999999998653 345566778888888888888999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHH--HHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 541 PRILLLDEATSALDAESEKVVQE--ALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~--~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
|+++||||||++||+.+...+.+ .++.+. ++.|+|++||+.+.+..||++++|++|.
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999887776 444433 3689999999999998899999999873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=364.91 Aligned_cols=229 Identities=25% Similarity=0.345 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~ 457 (1178)
.++++|++++|+.+.. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+++.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999975322 3599999999999999999999999999999999999974 8999999999999888766
Q ss_pred Hh----cceEEEcCCCC--CC-cccHHHHHhcC---CCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 458 IR----KKIGLVSQEPV--LF-TGSIKDNIAYG---KDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 458 ~r----~~i~~v~Q~~~--l~-~~ti~~ni~~~---~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
++ +.|+||+|+|. +. .-|+.+++... ...... +++.+.++..++.+ ..........+|
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~--------~~~~l~~~p~~L 154 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD--------PASRLDVYPHQL 154 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hHHHHhCCchhC
Confidence 54 36999999995 33 24565554321 111121 22223333322211 013456778899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEE
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVE 600 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~ 600 (1178)
|||||||++|||||+.+|++||+||||++||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|+|+|
T Consensus 155 SgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive 234 (326)
T PRK11022 155 SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVE 234 (326)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 789999999999985 599999999999999
Q ss_pred ecChhHHhcCCCchHHHHH
Q 001041 601 KGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~ 619 (1178)
.|+++++.+++...|.+.+
T Consensus 235 ~g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 235 TGKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred ECCHHHHhhCCCChHHHHH
Confidence 9999999987777776543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=365.13 Aligned_cols=232 Identities=22% Similarity=0.391 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCCHHHH
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~ 458 (1178)
.++++|++++|+.+. ...+++|+||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|.++..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996432 246999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----cceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHH-HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 459 R----KKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEI-RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 459 r----~~i~~v~Q~~~--l~-~~ti~~ni~~~~---~~~~~~~~-~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
+ ++|+||+|+|. ++ ..|+.+|+.... ...+.++. ..+.+. .+.+ .+|++. ..++....+|||||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~---L~~v-gL~~~~-~~~~~~p~~LSgG~ 166 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM---LDAV-KMPEAR-KRMKMYPHEFSGGM 166 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH---HHHc-CCCChH-HHhcCCcccCCHHH
Confidence 3 47999999993 44 357777765321 11222222 222211 1221 344332 33677889999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~ 604 (1178)
|||++||||++.+|++||+||||++||+.+...+.+.++++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.|++
T Consensus 167 ~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~ 246 (330)
T PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNA 246 (330)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988754 789999999999986 4999999999999999999
Q ss_pred hHHhcCCCchHHHHH
Q 001041 605 SKLVEDPEGAYSQLI 619 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~ 619 (1178)
+++.+++...|.+.+
T Consensus 247 ~~i~~~p~~pyt~~l 261 (330)
T PRK09473 247 RDVFYQPSHPYSIGL 261 (330)
T ss_pred HHHHhCCCCHHHHHH
Confidence 999988777777643
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=351.78 Aligned_cols=217 Identities=23% Similarity=0.455 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|++
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (241)
T PRK10895 3 TLTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRG 79 (241)
T ss_pred eEEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhC
Confidence 3789999999963 46999999999999999999999999999999999999999999999999998777644 5678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|++.++. .|++||+.++... .+.++.+ ..+.+.++.+ |++.........||||||||++||||+
T Consensus 80 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 80 IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred eEEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHH
Confidence 999999998886 5999999875321 1122111 1223445554 566666777789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+++|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 226 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQ 226 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhc
Confidence 99999999999999999999999998888765 4789999999998775 599999999999999999998865
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=340.23 Aligned_cols=224 Identities=34% Similarity=0.566 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCC---------------------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 383 DIELRDVYFSYPARPN---------------------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~---------------------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
.|+++||+.-++.++. .--++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888887764321 1236899999999999999999999999999999999999999
Q ss_pred cEEECCeecCCCCHHHHh----cceEEEcCCCCCC-cccHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCC
Q 001041 442 EVLIDGINLKEFQLQWIR----KKIGLVSQEPVLF-TGSIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQ 510 (1178)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r----~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~ 510 (1178)
+|.++|.|+..++.++|| +++++|+|+--|+ .-||.||..||.+-. ..++..++++.++|+++-.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~---- 159 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYAD---- 159 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhh----
Confidence 999999999999987764 6899999999887 589999999996521 1233445556666555544
Q ss_pred CccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchh-hcc
Q 001041 511 GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNA 587 (1178)
Q Consensus 511 g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~-~~~ 587 (1178)
.....||||+|||+.|||||..+|+|||+|||+|||||--...+|+.+.++.+ +||+++|||+++.. +-.
T Consensus 160 -------~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 160 -------KYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -------cCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 34468999999999999999999999999999999999999999988866543 69999999999985 559
Q ss_pred CEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 588 DMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 588 d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
|||..|++|+|++.|+|+|++.++...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999987766644
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=352.53 Aligned_cols=218 Identities=30% Similarity=0.489 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecC-CCCHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK-EFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~-~~~~~ 456 (1178)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++| .+|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999963 4699999999999999999999999999999999999986 5899999999885 34566
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
.+|+.++|++|+|.+|..|++||+.++... . ..+ ++.++++..++. +++.........+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALW-------DEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCc-------hhhhHHhhcCcccCCHHHHH
Confidence 778899999999999999999999875321 1 111 122223322222 22234556677899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988777899999999999876 9999999999999999998886
Q ss_pred cC
Q 001041 609 ED 610 (1178)
Q Consensus 609 ~~ 610 (1178)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-39 Score=356.01 Aligned_cols=221 Identities=27% Similarity=0.501 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCCC-HH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEFQ-LQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~~-~~ 456 (1178)
.++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 6999999999987653 34
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCCCCCCChHHHHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDK--LPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~--~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
.+|.+++|++|+|.+|..|+++|+.++... .++++..... .+.++. ++..+.+.+.....+||||||||+
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl 172 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWDAVKDRLSDSPFRLSGGQQQLL 172 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCchhhhHhhCCcccCCHHHHHHH
Confidence 678899999999999999999999875321 2333332211 112222 222223456677889999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 173 ~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 173 CLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252 (276)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999887667899999999998765 999999999999999999999765
Q ss_pred C
Q 001041 611 P 611 (1178)
Q Consensus 611 ~ 611 (1178)
+
T Consensus 253 ~ 253 (276)
T PRK14271 253 P 253 (276)
T ss_pred c
Confidence 3
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=351.23 Aligned_cols=204 Identities=32% Similarity=0.447 Sum_probs=174.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 4999999999963 46999999999999999999999999999999999999999999999997653 457789
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|++|++.+|. .|++||+.++.....++++.++++.. |++........+||||||||++||||++++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV-----------GLADRANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999998886 79999999764221123333333333 4444456667899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999999999999998864 3689999999999875 49999999999999988764
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=332.68 Aligned_cols=172 Identities=39% Similarity=0.705 Sum_probs=161.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++. ..++++++||++++||+++|+||+|||||||+++|+|+++|++|+|.++|.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4689999999743 246999999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|++|..|++||+ ||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
+||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||+|++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999998875 47899999999999888999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=346.23 Aligned_cols=207 Identities=31% Similarity=0.545 Sum_probs=172.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 468999999964 3699999999999999999999999999999999999999999999999998765543 46799
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~ 148 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDE-----RVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVRE 148 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999885 6999999875221 12222111 112223333 455556666788999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 149 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 149 PKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999988753 7899999999998865 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=348.35 Aligned_cols=209 Identities=35% Similarity=0.518 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
|+++|++++|+.... +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 468999999964211 469999999999999999999999999999999999999999999999998763 35689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|+|.+|. .|++||+.++... ...++.. ..+.+.++.+ |++........+||||||||++||||+++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~ 148 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAV 148 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 99999999886 7999999875321 1111111 1112233333 44444555667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEe--CCEEEEecCh
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH--RGKIVEKGTH 604 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 604 (1178)
+|+++||||||++||+.+...+.+.++++. .++|+|++||+++.+. .||++++|+ +|++++.++.
T Consensus 149 ~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 149 DPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999998874 3789999999999875 599999999 7999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=362.98 Aligned_cols=217 Identities=25% Similarity=0.453 Sum_probs=180.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998654 35568899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||++.++ ..|++||+.+... ..+.++....+ .+.++.+ |+.........+||||||||++||||++.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999999888 4799999975221 12222222211 1122222 34444455567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998874 47899999999999865 999999999999999999998653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=351.67 Aligned_cols=222 Identities=30% Similarity=0.511 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~~ 455 (1178)
.++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 3899999999998653 45
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+|++++|+||+|++|..|++||+.++... .+. +++.++++.+++.+++. ...++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK-------DKLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH-------HHHhCCcccCCHHHH
Confidence 6778899999999999999999999875321 112 22334455554443332 234566789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778899999999998876 899999999999999999998
Q ss_pred hcCCCch
Q 001041 608 VEDPEGA 614 (1178)
Q Consensus 608 ~~~~~~~ 614 (1178)
...+...
T Consensus 233 ~~~~~~~ 239 (250)
T PRK14266 233 FINPKDK 239 (250)
T ss_pred HhCCCCh
Confidence 7654433
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-39 Score=354.41 Aligned_cols=220 Identities=32% Similarity=0.496 Sum_probs=184.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~ 454 (1178)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 3599999999999999999999999999999999999985 48999999998854 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...++.+++|++|+|.+|..|++||+.++... ..+ +.+.++++.+++.+.+ .......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV-------KDKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh-------hhHhcCCcccCCHHH
Confidence 56678899999999999999999999875311 111 2233444444433222 233456778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEe-----CCEEEEe
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-----RGKIVEK 601 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-----~G~i~~~ 601 (1178)
|||++||||++++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999988777899999999999865 99999997 5999999
Q ss_pred cChhHHhcCC
Q 001041 602 GTHSKLVEDP 611 (1178)
Q Consensus 602 g~~~~l~~~~ 611 (1178)
|+++++.+.+
T Consensus 236 ~~~~~~~~~~ 245 (259)
T PRK14260 236 GVTTQIFSNP 245 (259)
T ss_pred CCHHHHhcCC
Confidence 9999987653
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-39 Score=353.63 Aligned_cols=212 Identities=26% Similarity=0.492 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888778888899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC-------CCH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDD-------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~-------~~~---~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
|++|++.++.+ |+.||+.++... ... +++..+++.. |++.........||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT-----------RINHLADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc-----------CCHHHHcCCcccCCHHHHHHHH
Confidence 99999988865 999999976321 011 1222333332 3444455667889999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
||||++.+|++|||||||++||+++...+.+.++++. +++|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998865 4789999999999886 499999999999999999988754
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=355.56 Aligned_cols=219 Identities=34% Similarity=0.521 Sum_probs=182.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~--~~ 454 (1178)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999963 469999999999999999999999999999999999987 689999999999864 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
...+|++++|++|++.+|..|++||+.++... .. +++++.+++..++.+ .+.....+...+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWD-------EVKDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCc-------hhHHHHhCCcccCCHHHHH
Confidence 55678899999999999988999999874211 11 222333333332211 1123456777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEE-EEeCCEEEEecChhHH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIA-VIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~-~l~~G~i~~~g~~~~l 607 (1178)
|++||||++++|+||||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999988767899999999999875 99975 5799999999999988
Q ss_pred hcC
Q 001041 608 VED 610 (1178)
Q Consensus 608 ~~~ 610 (1178)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 654
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=348.81 Aligned_cols=217 Identities=29% Similarity=0.502 Sum_probs=181.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC------CCCHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK------EFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~------~~~~~ 456 (1178)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 3789999999963 36999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
..|++++|+||+|.+|. .|++||+.++.. ....++.. ..+.+.++.+ |++..+.....+||||||||++
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 151 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL--RLKPYADRFPLHLSGGQQQRVA 151 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CChhhhhCChhhCCHHHHHHHH
Confidence 67789999999999886 599999974211 11222211 1223444444 6666677777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
||||++++|+++||||||++||+++...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998875 37899999999999865 99999999999999999988754
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=353.97 Aligned_cols=221 Identities=31% Similarity=0.470 Sum_probs=185.9
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecC----
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLK---- 451 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~---- 451 (1178)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456999999999963 3699999999999999999999999999999999999875 7999999998774
Q ss_pred CCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--CC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--AT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~~-----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
..+...+++.++|++|++.+|.+|++||+.++... .. ++++..+++.+++.+ ++....+....+||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 23455678899999999999999999999875311 11 123333443333222 33455677788999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
||||||++||||++++|+++||||||++||+.+.+.+.+.++++.+++|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999988776789999999999986 599999999999999999
Q ss_pred hhHHhcCC
Q 001041 604 HSKLVEDP 611 (1178)
Q Consensus 604 ~~~l~~~~ 611 (1178)
++++..++
T Consensus 244 ~~~~~~~~ 251 (265)
T PRK14252 244 TDTIFIKP 251 (265)
T ss_pred HHHHHhCC
Confidence 99987653
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=349.22 Aligned_cols=212 Identities=34% Similarity=0.527 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH---HHHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r 459 (1178)
|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996421 1269999999999999999999999999999999999999999999999999987763 5678
Q ss_pred cceEEEcCCCC--CC-cccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 001041 460 KKIGLVSQEPV--LF-TGSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 460 ~~i~~v~Q~~~--l~-~~ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri 531 (1178)
++++|++|+|. ++ ..|++||+.++... ..++....+ ..+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-----VLLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHH-----HHHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 89999999993 44 57999999764211 111111111 01233333 443 456677789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
+||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999988764 789999999999987 59999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=355.71 Aligned_cols=217 Identities=28% Similarity=0.465 Sum_probs=178.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~~ 461 (1178)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 3344567789
Q ss_pred eEEEcCCCC--CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPV--LFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~--l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|+|. ++..|+.+|+.++.. ..+.++.... +.+.++.+ |++........+||||||||++||||+
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL 151 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGAL 151 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHH
Confidence 999999985 567889999987421 1122222111 11222222 333334456678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 152 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 152 VLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999998875 47899999999999854 999999999999999999888654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=345.66 Aligned_cols=205 Identities=37% Similarity=0.654 Sum_probs=171.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999642 2469999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcCCCC--CCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 465 VSQEPV--LFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 465 v~Q~~~--l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
++|+|. ++..|++||+.++... .+..+... .+.+.++.+ |++.........||||||||++||||++++
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999983 6788999999875321 12221111 112233333 455555666789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999988754 7899999999999877 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=346.05 Aligned_cols=213 Identities=25% Similarity=0.447 Sum_probs=179.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|+++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++.++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999888887788899
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+|++|++.+|..|++||+.++.......... ..+.+.++.+ |+. +.......+||||||||++||||++++|
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p 156 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-----AIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMP 156 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHH-----HHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999998642100000000 1112334444 453 4567778899999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEe-CCEEEEecChh
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIH-RGKIVEKGTHS 605 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~-~G~i~~~g~~~ 605 (1178)
+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||++++|+ ++..+++|+|+
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 157 KVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999988753 789999999999998899999995 66677788875
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=364.06 Aligned_cols=217 Identities=27% Similarity=0.494 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...|++|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||++.++ ..|++||+.+.... .+.++..+.+ .+.++.+ |+.........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 9999999886 67999999853211 1222222211 1122221 33333444556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999998875 47899999999999865 999999999999999999998654
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=352.55 Aligned_cols=223 Identities=22% Similarity=0.433 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+.... +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCCCCCCH----------HHH--HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 462 IGLVSQEPVLFTG-SIKDNIAYGKDDATT----------EEI--RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~----------~~~--~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
++|++|+|.+|.. |++||+.++...... ... ..........+.++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999874 999999975311000 000 0000111223344444 666777888889999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988753 6899999999999865 9999999999999999998
Q ss_pred HHhcC
Q 001041 606 KLVED 610 (1178)
Q Consensus 606 ~l~~~ 610 (1178)
++...
T Consensus 240 ~~~~~ 244 (255)
T PRK11300 240 EIRNN 244 (255)
T ss_pred HHhhC
Confidence 87643
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=355.76 Aligned_cols=218 Identities=33% Similarity=0.558 Sum_probs=180.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC--CCHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~ 461 (1178)
++++|++++|+. ..++++|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.++|.++.. .+...++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2469999999999999999999999999999999999999999999999999852 234467889
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
|+|++|+| .++..|++||+.++... .+.++.... +.+.++.+ |++........+||||||||++||||+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral 152 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR-----VKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGIL 152 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHH
Confidence 99999998 57888999999875321 122221111 11222222 343344455678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+.+|+++||||||++||+.+.+.+.+.+.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 153 ~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 153 AMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999988753 789999999999987 5999999999999999999998754
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=345.87 Aligned_cols=201 Identities=30% Similarity=0.491 Sum_probs=168.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r~ 460 (1178)
++++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999999999999877643 4677
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--AT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
.++|++|+|.+|. .|++||+.++... .. ++++++.++..++ .........+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGL-----------EHKADAFPEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHHHHH
Confidence 8999999999885 7999999875211 11 1233334443333 323344456899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
|||++++|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998865 47899999999999875 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=350.92 Aligned_cols=213 Identities=27% Similarity=0.481 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++++
T Consensus 2 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i 78 (258)
T PRK13548 2 MLEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRR 78 (258)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhhe
Confidence 3789999999963 4699999999999999999999999999999999999999999999999999888777778899
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDDA--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+|++|++.+ +..|++||+.++.... . ++++..+++.. |++.........||||||||++|||
T Consensus 79 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGe~qrv~la~ 147 (258)
T PRK13548 79 AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQV-----------DLAHLAGRDYPQLSGGEQQRVQLAR 147 (258)
T ss_pred EEEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHc-----------CCHhHhcCCcccCCHHHHHHHHHHH
Confidence 999999987 5789999998753211 1 11222233332 4444455667899999999999999
Q ss_pred Hhc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 536 AIL------KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 536 al~------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|++ .+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 148 al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (258)
T PRK13548 148 VLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAE 227 (258)
T ss_pred HHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHH
Confidence 999 5999999999999999999999999998875 4789999999999886 599999999999999999988
Q ss_pred Hhc
Q 001041 607 LVE 609 (1178)
Q Consensus 607 l~~ 609 (1178)
+..
T Consensus 228 ~~~ 230 (258)
T PRK13548 228 VLT 230 (258)
T ss_pred HhC
Confidence 764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=351.61 Aligned_cols=225 Identities=30% Similarity=0.481 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++|. +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999874 8999999999865 344
Q ss_pred HHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC--C-CHHHHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--A-TTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~-~~~~~~~~~~~~~~~~~i~~~--~~g~~t~~~~~g~~lSgGqkq 529 (1178)
..+|+.++|++|+|.+|. .|++||+.++... . .+++..+.+. +.++.+ ..++.........+|||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 155 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE-----RSLRGAALWDEVKDRLKTPATGLSGGQQQ 155 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHH-----HHHHHcCcchhhhhhhcCCcccCCHHHHH
Confidence 567889999999999887 5999999864321 1 2222222111 111111 111222334556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
|++||||++++|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999887777999999999999875 9999999999999999999987
Q ss_pred cCCCchH
Q 001041 609 EDPEGAY 615 (1178)
Q Consensus 609 ~~~~~~~ 615 (1178)
..+...+
T Consensus 236 ~~~~~~~ 242 (252)
T PRK14272 236 TNPRDER 242 (252)
T ss_pred hCcCcHH
Confidence 6544333
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=360.02 Aligned_cols=216 Identities=22% Similarity=0.440 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||+|.++.. |++||+.+.... ...++... ...+.++.+ |++........+||||||||++||||++++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999998865 999999763211 12221111 122334444 566666777789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999988778999999999998875 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=350.91 Aligned_cols=220 Identities=31% Similarity=0.445 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|.|+++| .+|+|.++|.++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999963 3699999999999999999999999999999999999863 58999999999864 344
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
..+|++++|++|++.+|..|+.||+.++.... .++.+..+++.+++.+. +..........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEE-------VKDKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchh-------hHHHhcCCcccCCHHHHHH
Confidence 56788999999999999889999998753211 12223334444443222 2234556778899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEe---------CCEEEE
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH---------RGKIVE 600 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~---------~G~i~~ 600 (1178)
++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 9999999999999999999999999999999999998877789999999999886 499999997 899999
Q ss_pred ecChhHHhcCCC
Q 001041 601 KGTHSKLVEDPE 612 (1178)
Q Consensus 601 ~g~~~~l~~~~~ 612 (1178)
.|+++++..++.
T Consensus 250 ~g~~~~~~~~~~ 261 (274)
T PRK14265 250 FSPTEQMFGSPQ 261 (274)
T ss_pred eCCHHHHHhCCC
Confidence 999999876543
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=351.81 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=183.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++..
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 469999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCC-CC------CCH---HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGK-DD------ATT---EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~-~~------~~~---~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
++|++|++.+| ..|++||+.++. +. ..+ +++..+++.. |++........+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT-----------GITHLADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc-----------CCHHHhcCCcccCChHHHHH
Confidence 99999999877 579999998752 11 011 1223333333 44444556778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
++||||++++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 6899999999998754 999999999999999999887
Q ss_pred hc
Q 001041 608 VE 609 (1178)
Q Consensus 608 ~~ 609 (1178)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=354.61 Aligned_cols=221 Identities=30% Similarity=0.462 Sum_probs=182.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCCC--C
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~ 454 (1178)
..|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 359999999999999999999999999999999999864 4899999999988643 3
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD--A-TT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~--~-~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...+|++++|++|+|.+|..|++||+.++... . +. +++.++++..++.+ ++..........|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD-------EVSDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc-------chhhHhhCChhhCCHHH
Confidence 34568899999999999988999999975321 1 11 12222333322211 12233456678899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|||++||||++.+|++|||||||++||+++...+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999887767899999999999865 99999999999999999999
Q ss_pred HhcCCC
Q 001041 607 LVEDPE 612 (1178)
Q Consensus 607 l~~~~~ 612 (1178)
+.+++.
T Consensus 268 ~~~~~~ 273 (286)
T PRK14275 268 LFTNPK 273 (286)
T ss_pred HHhCCC
Confidence 876543
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=345.22 Aligned_cols=197 Identities=31% Similarity=0.516 Sum_probs=164.3
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++++|+
T Consensus 2 ~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v 73 (213)
T cd03235 2 VEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYV 73 (213)
T ss_pred cccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEe
Confidence 6799999963 36999999999999999999999999999999999999999999999998764 457789999
Q ss_pred cCCCCC---CcccHHHHHhcCCCCC-------C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 466 SQEPVL---FTGSIKDNIAYGKDDA-------T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 466 ~Q~~~l---~~~ti~~ni~~~~~~~-------~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
+|+|.+ ++.|++||+.++.... . .+++.++++.. |++........+||||||||++
T Consensus 74 ~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~ 142 (213)
T cd03235 74 PQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV-----------GLSELADRQIGELSGGQQQRVL 142 (213)
T ss_pred ccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc-----------CCHHHHhCCcccCCHHHHHHHH
Confidence 999976 5689999998754311 1 12233333333 3333444566789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
||||++.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 9999999999999999999999999999999998865 57899999999999865 8999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=349.93 Aligned_cols=219 Identities=30% Similarity=0.417 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCCC--CH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKEF--QL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~~--~~ 455 (1178)
.+.+++.+++|+. .++|+|+||++++||+++|+|+||||||||+++|.|+++| .+|+|.++|.++... ..
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4788999999953 4699999999999999999999999999999999999986 799999999998643 34
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
..+|+.++|++|+|++|..|++||+.++.... ..+++.++++..++.+.+ ....++...+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV-------KDKLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHHHH
Confidence 46678899999999999999999998763211 123344455544443322 223456778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEe--------CCEEEEe
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH--------RGKIVEK 601 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~--------~G~i~~~ 601 (1178)
++||||++++|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999988777899999999998765 99999996 8999999
Q ss_pred cChhHHhcCC
Q 001041 602 GTHSKLVEDP 611 (1178)
Q Consensus 602 g~~~~l~~~~ 611 (1178)
|+++++.+++
T Consensus 238 g~~~~~~~~~ 247 (261)
T PRK14263 238 GPTAQIFQNP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999987653
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=350.21 Aligned_cols=224 Identities=29% Similarity=0.471 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee-----cCCCCHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-----~~~~~~~~ 457 (1178)
.++++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 469999999999999999999999999999999999999999999999998 77666544
Q ss_pred ----HhcceEEEcCCCC--CC-cccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChH
Q 001041 458 ----IRKKIGLVSQEPV--LF-TGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ----~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgG 526 (1178)
.++.++|++|++. ++ ..|+.+|+.+.. ......+... ...+.++.+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 458888886421 1111122111 234555555 343 4667888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999987654 789999999999997 499999999999999999
Q ss_pred hhHHhcCCCchHH
Q 001041 604 HSKLVEDPEGAYS 616 (1178)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1178)
++++..++...|.
T Consensus 236 ~~~~~~~~~~~~~ 248 (258)
T PRK11701 236 TDQVLDDPQHPYT 248 (258)
T ss_pred HHHHhcCCCCHHH
Confidence 9998765444443
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=356.81 Aligned_cols=219 Identities=30% Similarity=0.526 Sum_probs=184.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-----CCCCcEEECCeecCCC--C
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-----PQAGEVLIDGINLKEF--Q 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-----~~~G~i~i~g~~~~~~--~ 454 (1178)
..|+++|++++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999964 469999999999999999999999999999999999986 6899999999998653 3
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC--------------C-----HHHHHHHHHHhcHHHHHHhCCCCccch
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA--------------T-----TEEIRVATELANAAKFIDKLPQGIDTL 515 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~--------------~-----~~~~~~~~~~~~~~~~i~~~~~g~~t~ 515 (1178)
...+|++++|++|++.+|+.|++||+.++.... . ++++..+++.++ ++.++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------l~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAA-------LWDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcC-------CchhhhHH
Confidence 556788999999999999999999999753210 0 111222222222 23344566
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEE-EEE
Q 001041 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMI-AVI 593 (1178)
Q Consensus 516 ~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i-~~l 593 (1178)
......+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 77888999999999999999999999999999999999999999999999988777899999999999865 9997 567
Q ss_pred eCCEEEEecChhHHhcC
Q 001041 594 HRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 594 ~~G~i~~~g~~~~l~~~ 610 (1178)
++|++++.|+++++.+.
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999988754
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=351.19 Aligned_cols=221 Identities=25% Similarity=0.439 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEcCCCC-CCcccHHHHHhcCCCCCCHH-HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 464 LVSQEPV-LFTGSIKDNIAYGKDDATTE-EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 464 ~v~Q~~~-l~~~ti~~ni~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|++|++. .+..|++||+.++....... ..........+.+.++.+ |+..........||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999985 45789999998753210000 000000011122333333 3444456667889999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+++||||||++||+.+...+.+.++++.+ +.|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999988753 689999999999995 599999999999999999988754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=343.71 Aligned_cols=206 Identities=33% Similarity=0.536 Sum_probs=169.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH---HHHhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL---QWIRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~---~~~r~ 460 (1178)
++++|++++|+.. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999642 469999999999999999999999999999999999999999999999999887654 34677
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
.++|++|+|.+|. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++||||+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 151 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRK-----RVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAI 151 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence 8999999998886 5999999875321 12221111 112223332 444444555678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+++|+++||||||++||+++.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999998874 47899999999999875 899999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=350.40 Aligned_cols=218 Identities=32% Similarity=0.492 Sum_probs=180.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-----CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-----QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-----~~G~i~i~g~~~~~--~~~ 455 (1178)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 3699999999999999999999999999999999999974 69999999998853 345
Q ss_pred HHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC---CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 456 QWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD---ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
..+|+.++|++|++.+|. .|++||+.++... .+.+ ++.++++..++.+ +..........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWN-------EVKDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch-------hhhhHhhCCcccCCHHH
Confidence 567889999999998886 6999999865321 1111 2222233332211 12344566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEe------CCEEEE
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIH------RGKIVE 600 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~------~G~i~~ 600 (1178)
|||++||||++.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999988866789999999999885 599999997 899999
Q ss_pred ecChhHHhcC
Q 001041 601 KGTHSKLVED 610 (1178)
Q Consensus 601 ~g~~~~l~~~ 610 (1178)
.|+++++...
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=340.05 Aligned_cols=201 Identities=31% Similarity=0.531 Sum_probs=168.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 1 i~~~~l~~~~~~~---~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGEQ---P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCCE---e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 4689999999632 2 39999999999999999999999999999999999999999999999876654 356899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC-CC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKD-DA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~-~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|+|.+|. .|++||+.++.. .. .++++.++++..++. ........+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-----------GLEKRLPGELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-----------HHHhCCcccCCHHHHHHHHHHHH
Confidence 9999999986 499999987532 11 122344444444443 33344556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
++++|+++||||||++||+++...+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999988753 7899999999999865 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=350.40 Aligned_cols=221 Identities=25% Similarity=0.380 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--------CCcEEECCeecCCCCH
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--------AGEVLIDGINLKEFQL 455 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~--------~G~i~i~g~~~~~~~~ 455 (1178)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|.|+++|. +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999963 46999999999999999999999999999999999999998 9999999999988887
Q ss_pred HHHhcceEEEcCCCC-CCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 456 QWIRKKIGLVSQEPV-LFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~-l~~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
..+++.++|+||++. +|..|++||+.++.... ...............+.++.+ |+++..+....+||||||||++|
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~l 156 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA--GATALVGRDVTTLSGGELARVQF 156 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHH
Confidence 788888999999985 57889999998753111 000000000001122333333 66666777888999999999999
Q ss_pred HHHhc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEe
Q 001041 534 ARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1178)
Q Consensus 534 ARal~---------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~ 601 (1178)
|||++ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||++++|++|++++.
T Consensus 157 aral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~ 236 (272)
T PRK13547 157 ARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAH 236 (272)
T ss_pred HHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEe
Confidence 99999 59999999999999999999999999988754 689999999999986 5999999999999999
Q ss_pred cChhHHhc
Q 001041 602 GTHSKLVE 609 (1178)
Q Consensus 602 g~~~~l~~ 609 (1178)
|+++++..
T Consensus 237 g~~~~~~~ 244 (272)
T PRK13547 237 GAPADVLT 244 (272)
T ss_pred cCHHHHcC
Confidence 99988754
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=344.72 Aligned_cols=215 Identities=36% Similarity=0.552 Sum_probs=179.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+. +++++|+||++++||+++|+|+||||||||+++|+|+++|.+|+|.++|+++...+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 468999999963 3699999999999999999999999999999999999999999999999998876543 57899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.+|. .|++||+.++... .+...... .+.+.++.+ |++........+||||||||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKE-----RVAEALDLV--QLEGYANRKPSQLSGGQQQRVAIARALVNE 148 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999999986 4999999865321 11111111 111222222 445455566679999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 149 PKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 999999999999999999999999988754 7899999999999865 999999999999999999888754
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=350.33 Aligned_cols=221 Identities=31% Similarity=0.506 Sum_probs=183.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-----CCcEEECCeecCC--CC
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-----AGEVLIDGINLKE--FQ 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-----~G~i~i~g~~~~~--~~ 454 (1178)
+.|+++|++++|++ ..+|+|+||++++||+++|+|+||||||||+++|.|+++|+ +|+|.++|.++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35999999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---CCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 455 LQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---ATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
...+|+.++|++|++.+|..|++||+.++... .+. +++..+++..++.++ ++...++....|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDE-------IKHKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcch-------hhhHhcCCcccCCHHH
Confidence 45678899999999999999999999864211 111 223333333333222 2234566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC-----CEEE
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR-----GKIV 599 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~-----G~i~ 599 (1178)
|||++||||++++|++|||||||++||+.+.+.+.+.++++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999998754 47899999999999865 999999999 9999
Q ss_pred EecChhHHhcCCC
Q 001041 600 EKGTHSKLVEDPE 612 (1178)
Q Consensus 600 ~~g~~~~l~~~~~ 612 (1178)
+.|+++++..++.
T Consensus 236 ~~~~~~~~~~~~~ 248 (261)
T PRK14258 236 EFGLTKKIFNSPH 248 (261)
T ss_pred EeCCHHHHHhCCC
Confidence 9999999976543
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=360.52 Aligned_cols=229 Identities=24% Similarity=0.380 Sum_probs=184.3
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC----CCCCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD----PQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~----~~~G~i~i~g~~~~~~~~~~ 457 (1178)
.++++|++++|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++...+...
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 378999999996432 2469999999999999999999999999999999999986 58899999999998887665
Q ss_pred Hh----cceEEEcCCCCC--C-cccHHHHHhcCCC---CC-----CHHHHHHHHHHhcHHHHHHhCCCCcc---chhcCC
Q 001041 458 IR----KKIGLVSQEPVL--F-TGSIKDNIAYGKD---DA-----TTEEIRVATELANAAKFIDKLPQGID---TLVGEH 519 (1178)
Q Consensus 458 ~r----~~i~~v~Q~~~l--~-~~ti~~ni~~~~~---~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~---t~~~~~ 519 (1178)
++ +.|+||+|+|.. . ..||.+|+..... .. ...+.. ..+.+.++.+ |++ ......
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~~~~~ 155 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRK-----RRAIELLHRV--GIKDHKDAMRSF 155 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHH-----HHHHHHHHHC--CCCChHHHHhCC
Confidence 43 479999999963 2 4689999864211 00 101110 1112233333 332 234566
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 520 g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 789999999999999999999999999999999999999999999988754 7899999999999965 9999999999
Q ss_pred EEEEecChhHHhcCCCchHHHH
Q 001041 597 KIVEKGTHSKLVEDPEGAYSQL 618 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~~~~~~~~~ 618 (1178)
+|+|.|+.+++..++...|.+.
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHH
Confidence 9999999999988766677653
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=349.21 Aligned_cols=224 Identities=29% Similarity=0.481 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC------eecCCCCHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG------INLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g------~~~~~~~~~ 456 (1178)
.+.++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++| +++...+..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5899999999964 4699999999999999999999999999999999999999987766665 666666777
Q ss_pred HHhcceEEEcCCCCCCcc-cHHHHHhcCCCC--C-CHHHH----HHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 457 WIRKKIGLVSQEPVLFTG-SIKDNIAYGKDD--A-TTEEI----RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~--~-~~~~~----~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
.+|.+++|++|+|.+|.+ |++||+.++... . .+++. ..+++..++.+.+ ....++.+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHHH
Confidence 788999999999998865 999999975321 1 22222 2222222221111 1234567788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++.+|+++||||||++||+.+.+.+.+.+.++.+++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999988777799999999999985 5999999999999999999999
Q ss_pred hcCCCchHH
Q 001041 608 VEDPEGAYS 616 (1178)
Q Consensus 608 ~~~~~~~~~ 616 (1178)
.+++...+.
T Consensus 240 ~~~~~~~~~ 248 (257)
T PRK14246 240 FTSPKNELT 248 (257)
T ss_pred HhCCCcHHH
Confidence 876544443
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=344.68 Aligned_cols=215 Identities=33% Similarity=0.542 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 468999999963 369999999999999999999999999999999999999999999999999876553 367899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||+|.+|.+ |++||+.++... .+..... ..+.+.++.+ |+.........+|||||+||++||||++++
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~ 148 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVE 148 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999999964 999999875421 1111111 1223444444 333344556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+++||||||++||+++.+.+.+.+++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 149 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 149 PQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999988654 6899999999998765 999999999999999999998764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=349.28 Aligned_cols=220 Identities=30% Similarity=0.464 Sum_probs=181.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--C---CCCcEEECCeecCC--CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--P---QAGEVLIDGINLKE--FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~---~~G~i~i~g~~~~~--~~~ 455 (1178)
.|+++|++++|+. +++|+|+||++++||+++|+|+||||||||+++|.|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999865 4 58999999998864 334
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCC--C-CCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--D-ATTE----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~-~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..+++.++|++|+|.+|..|+++|+.++.. . ...+ ++...++..++. .++.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIW-------DEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCc-------cchhhHHhcCcccCCHHHH
Confidence 566789999999999999999999987521 1 1111 122222222221 1233445667789999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
||++||||++++|++|||||||++||+++.+.+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|++.++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999888767899999999999865 999999999999999999988
Q ss_pred hcCCC
Q 001041 608 VEDPE 612 (1178)
Q Consensus 608 ~~~~~ 612 (1178)
..++.
T Consensus 235 ~~~~~ 239 (252)
T PRK14255 235 FLNPK 239 (252)
T ss_pred hcCCC
Confidence 76543
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=305.65 Aligned_cols=192 Identities=29% Similarity=0.535 Sum_probs=168.6
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHH
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1178)
+.++|+++||++.+||+++|+||||||||||++.++-+.+|++|.+++.|.+++.++++.+|.+|+||.|.|-||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 001041 478 DNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1178)
Q Consensus 478 ~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1178)
||+.|+.. ..+.... .+++.++. -.++.+..+..+||||+|||+||+|-|---|+|||||||||||
T Consensus 95 DNlifP~~~r~rr~dr~aa---------~~llar~~-l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAA---------LDLLARFA-LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred hccccchHHhccCCChHHH---------HHHHHHcC-CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 99998631 1111211 23333332 2356677888899999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh--cCCeEEEEecCcch-hhccCEEEEEeCCEEE
Q 001041 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLST-VRNADMIAVIHRGKIV 599 (1178)
Q Consensus 554 D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~-~~~~d~i~~l~~G~i~ 599 (1178)
|+.+.+.|.+.|..+. ++..++.|||+.+. ++++|+++-+..|++-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 9999999999998876 46799999999988 7889999999998864
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=342.69 Aligned_cols=209 Identities=29% Similarity=0.503 Sum_probs=176.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. .+ .|+||++++||+++|+||||||||||+++|+|+++|.+|+|.++|.++...+.. +.+++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 22 399999999999999999999999999999999999999999999998766543 56899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC-CC--C---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKD-DA--T---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~-~~--~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|++.+|. .|++||+.++.. .. . ++++.++++..+ ++..+......||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMG-----------IEDLLARLPGQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcC-----------cHHHHhCCcccCCHHHHHHHHHHHH
Confidence 9999999887 499999987531 11 1 223334444443 4444455556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988753 7899999999999865 999999999999999999988754
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=343.27 Aligned_cols=208 Identities=27% Similarity=0.405 Sum_probs=173.0
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---H
Q 001041 383 DIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---I 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~ 458 (1178)
.|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974321 35999999999999999999999999999999999999999999999999998876543 2
Q ss_pred -hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 459 -r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
+.+++|++|+|.++. .|++||+.++.. .... +++.+.++.. |++.........||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL-----------GLGKRLDHLPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCHhHhhCChhhCCHHHHHH
Confidence 357999999998886 599999986421 1111 2233333333 33333445567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1178)
++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 6899999999999888999999999999763
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=342.03 Aligned_cols=205 Identities=26% Similarity=0.492 Sum_probs=171.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 468999999963 469999999999999999999999999999999999999999999999987753 4567899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.++. .|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 5999999864211 1111111 1223344444 555566677789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998764 46899999999998865 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=362.87 Aligned_cols=212 Identities=28% Similarity=0.481 Sum_probs=179.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHHHHh
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~~r 459 (1178)
|++ |++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+. .....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 566 89999963 2 23 99999999999999999999999999999999999999999999988653 233457
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++++|++|++.+|. .|++||+.++......+++.+.++.. |++........+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL-----------GIEPLLDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc-----------CCchhhhCCcccCCHHHHHHHHHHHHHH
Confidence 78999999999985 69999999875433333444444433 4444455666899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~ 612 (1178)
++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999988754 6899999999998765 99999999999999999999987754
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=341.78 Aligned_cols=207 Identities=28% Similarity=0.477 Sum_probs=171.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hhc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IRK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r~ 460 (1178)
|+++|++++|+. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999942 246999999999999999999999999999999999999999999999999998776443 678
Q ss_pred ceEEEcCCCCC-CcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 461 KIGLVSQEPVL-FTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 461 ~i~~v~Q~~~l-~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
.++|++|+|.+ +..|++||+.++.. ..+.++....+ .+.++.+ |++........+||||||||++||||+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral 152 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAV 152 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH-----HHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHH
Confidence 99999999986 47899999987521 12222222111 1222222 344444556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 99999999999999999999999999998874 46899999999999876 8999999999986
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=341.21 Aligned_cols=205 Identities=32% Similarity=0.566 Sum_probs=171.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC--CCHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~ 461 (1178)
++++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+....+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 468999999964 469999999999999999999999999999999999999999999999998853 344567789
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|+|.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++..+.....+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999885 799999987531 122222111 122334443 555566677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999988754 6899999999999865 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-38 Score=342.74 Aligned_cols=214 Identities=27% Similarity=0.443 Sum_probs=170.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCcEEECCeecCCCCHHHHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
+.++||+++|++.+ .+++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|.++. ....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 56899999997542 3679999999999999999999999999999999999999 89999999999875 34567
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHH-HHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAK-FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++++|++|++.+|.+ |++||+.++...................+ .++.+ |+.....+...+||||||||++||||+
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999876 99999987422110000000000001111 22222 444444556678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCc-chh-hccCEEEEEeCCEEEEec
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRL-STV-RNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~-~~~-~~~d~i~~l~~G~i~~~g 602 (1178)
+++|+++||||||++||+.+.+.+.+.+++.. +++|+|++||++ ..+ ..||+|++|++|++++.|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998765 468999999998 354 569999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=346.36 Aligned_cols=215 Identities=25% Similarity=0.391 Sum_probs=174.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEECCeecCCCCHHHH-hc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWI-RK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1178)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 468999999963 46999999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCC-CCChHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA---------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGT-QLSGGQK 528 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~-~lSgGqk 528 (1178)
.++|++|+|.+|. .|++||+.+..... +.++.. ..+.+.++.+ |++. ....... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 6999999998886 48999997642110 111111 1122233332 3432 2233333 5999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999998875 46899999999999875 7999999999999999987
Q ss_pred HHh
Q 001041 606 KLV 608 (1178)
Q Consensus 606 ~l~ 608 (1178)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=347.72 Aligned_cols=219 Identities=24% Similarity=0.432 Sum_probs=179.1
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1178)
.|+++|++++|+.+ .+.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999632 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 457 WIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~~---~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
..+++++|+||+|. ++ ..|+.+|+.++.. .... +++.++++.+++. .........+||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL----------PDHASYYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHHhcCchhcCHH
Confidence 66678999999985 34 3489999875311 1111 2233333333331 11223345689999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999988753 7899999999999876 99999999999999999
Q ss_pred hhHHhcCC
Q 001041 604 HSKLVEDP 611 (1178)
Q Consensus 604 ~~~l~~~~ 611 (1178)
++++.+.+
T Consensus 234 ~~~~~~~~ 241 (267)
T PRK15112 234 TADVLASP 241 (267)
T ss_pred HHHHhcCC
Confidence 99987754
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=346.92 Aligned_cols=220 Identities=24% Similarity=0.395 Sum_probs=179.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCC-----C
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEF-----Q 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~-----~ 454 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999886 49999999988653 2
Q ss_pred HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCH--HH---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 455 LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATT--EE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 455 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~--~~---~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
...++.+++|+||++.+|. .|++||+.++...... .. .........+.+.++.+ |++........+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV--GMVHFAHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc--CCHHHHhCCccccCHHHH
Confidence 3456788999999998886 6999999875321100 00 00000011122334333 454455667788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~ 238 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999988753 789999999999865 59999999999999999999
Q ss_pred HH
Q 001041 606 KL 607 (1178)
Q Consensus 606 ~l 607 (1178)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 86
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=336.66 Aligned_cols=228 Identities=29% Similarity=0.502 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-C----CCCcEEECCeecCCCCHHH
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-P----QAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~----~~G~i~i~g~~~~~~~~~~ 457 (1178)
++++|++.+|.... ...+++|+||++++||++||||+|||||||+.++|+|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997542 2469999999999999999999999999999999999997 3 5799999999999999875
Q ss_pred ---Hh-cceEEEcCCCCC-Cc--cc----HHHHHhcCCCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 458 ---IR-KKIGLVSQEPVL-FT--GS----IKDNIAYGKDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 458 ---~r-~~i~~v~Q~~~l-~~--~t----i~~ni~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
+| +.|++|+|||.- +| -| +.|-+.......+. ++..+.++.+++ |+ -+..+....++
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi-------~~-~~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGI-------PD-PERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCC-------CC-HHHHHhhCCcc
Confidence 44 579999999942 22 23 44444421111011 122233333322 21 12355677899
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
||||||||+.||-|+..+|++||-||||+|||..++++|.+.++++.+ +.|+|+|||++..+.. ||||+||..|+|+
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999988764 7899999999998865 9999999999999
Q ss_pred EecChhHHhcCCCchHHHHH
Q 001041 600 EKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 600 ~~g~~~~l~~~~~~~~~~~~ 619 (1178)
|.|+.+++..++...|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999999888888764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=335.62 Aligned_cols=202 Identities=31% Similarity=0.500 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ..++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999952 468999999999999999999999999999999999999999999999987643 3567899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCC-CCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGK-DDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~-~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
|++|+|.+|. .|++||+.++. +.. .++++.++++..++ +........+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGI-----------ADYLDRLPEQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCc-----------HHHhhCCcccCCHHHHHHHHHHHH
Confidence 9999999886 59999998642 111 12233334444443 333445556899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999988753 6899999999998864 99999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=340.18 Aligned_cols=214 Identities=30% Similarity=0.557 Sum_probs=178.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+. ++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+.. ++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~--~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChh--HcCEE
Confidence 468999999962 279999999999999999999999999999999999999999999999998876543 67899
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCC--CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDDA--TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.+| ..|++||+.++.... +..+... .+.+.++.+ |+...+.....+||||||||++||||++++
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~ 147 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIER-----KVLEIAEML--GIDHLLNRKPETLSGGEQQRVAIARALVVN 147 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHHhcCcccCCHHHHHHHHHHHHHHcC
Confidence 999999988 479999998753221 1111111 111222222 444445556678999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|++++|||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 148 PKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 999999999999999999999999988653 7899999999999875 999999999999999999988765
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=355.91 Aligned_cols=204 Identities=22% Similarity=0.425 Sum_probs=170.6
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1178)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++++|+||++.++. .|++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 34566889999999998886 5999
Q ss_pred HHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 478 DNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 478 ~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
||+.+.... .+..+... ...+.++.+ |+.........+||||||||++||||++++|++|||||||++||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEE-----RAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred HHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 999874211 11111111 112233333 444445566678999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 99999999998875 47899999999999865 999999999999999999998653
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=311.09 Aligned_cols=219 Identities=27% Similarity=0.476 Sum_probs=182.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+++.+++.+|++ ...+++|+||+++.||+++|.|+|||||||+|+.|..++.|++|.|++||.|+...+ ...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p-~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDP-SFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccCh-HHHhhhcc
Confidence 678899999975 234899999999999999999999999999999999999999999999999987654 45688999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+++-+.-++ ..|+||||.|...-+.-.+.+...+...+.+.+ +++..+..+..+||-|+|||++|||||.++|+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l-----~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~ 153 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-----QLLEYLDRRVGEFSTGMKQKVAIARALVHDPS 153 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----ChHHHHHHHHhhhchhhHHHHHHHHHHhcCCC
Confidence 999766666 689999999853222222222222333333322 45555566667899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+++||||||+||..+.+.+++.+..+.. ++++|+.||.++.++ -||+|+++++|+++..|+++++.+.
T Consensus 154 i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 154 ILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred eEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999988765 899999999999998 5999999999999999999988654
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=344.88 Aligned_cols=226 Identities=27% Similarity=0.432 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1178)
.|+++|+++.|+.. .++++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+..
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 37899999999631 125799999999999999999999999999999999999999999999999998877653
Q ss_pred ---HHhcceEEEcCCCC--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChH
Q 001041 457 ---WIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGG 526 (1178)
Q Consensus 457 ---~~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgG 526 (1178)
.+|+.++|++|++. ++ ..|+++|+.+... ..+.++ ....+.+.+..+ |+++ ........||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G 155 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGG 155 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChH
Confidence 46788999999983 33 4799999865311 111111 111233445444 6653 557778899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 235 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQP 235 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 99999999999999999
Q ss_pred hhHHhcCCCchHH
Q 001041 604 HSKLVEDPEGAYS 616 (1178)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1178)
++++... .+.|.
T Consensus 236 ~~~~~~~-~~~~~ 247 (268)
T PRK10419 236 VGDKLTF-SSPAG 247 (268)
T ss_pred hhhccCC-CCHHH
Confidence 9998754 44444
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=358.72 Aligned_cols=233 Identities=31% Similarity=0.505 Sum_probs=188.8
Q ss_pred ccEEEEeEEEECCCCC--------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee--cC
Q 001041 382 GDIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN--LK 451 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~--~~ 451 (1178)
.-++++|++.+|..++ ...+++|+||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| .+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 3478999999997421 2468999999999999999999999999999999999999999999999977 33
Q ss_pred CCCHHHHhcceEEEcCCCCCC---cccHHHHHhcCCCCCCH--HHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCCh
Q 001041 452 EFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYGKDDATT--EEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSG 525 (1178)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~---~~ti~~ni~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSg 525 (1178)
.-+....|+++-+|+|||.-. ..||+++|.-....+.. ...++ .+...+.+.+ |+.. ........|||
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~-~rv~~ll~~V-----gL~~~~l~ryP~elSG 432 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERR-ARVAELLELV-----GLPPEFLDRYPHELSG 432 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHH-HHHHHHHHHc-----CCCHHHHhcCchhcCc
Confidence 333556788999999999642 57999998743211110 01111 1122222222 3333 46778899999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
|||||+||||||..+|+++++|||||+||+-+...+.+.++++.+ +.|.|+|||++..++. ||||+||++|+|+|.|
T Consensus 433 GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999988764 6899999999999987 9999999999999999
Q ss_pred ChhHHhcCCCchHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~ 620 (1178)
+.+++.+.+...|.+..-
T Consensus 513 ~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 513 PTEKVFENPQHPYTRKLL 530 (539)
T ss_pred CHHHHhcCCCChHHHHHH
Confidence 999999988888887653
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-38 Score=348.85 Aligned_cols=214 Identities=31% Similarity=0.537 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++.+|+. +..+|+|+||+|++||++|++||||||||||+++|+|++.|++|+|.++|.+...- ....|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999963 24699999999999999999999999999999999999999999999999988765 66788899
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDD------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
||+||+|.++ .-|++||+.|...- ..++++.+.++..++.+ ........||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-----------~~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-----------KANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-----------hhCcchhhcCHHHHHHHHHHH
Confidence 9999999877 57999999984321 12344555555544332 124456789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-C-CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||+.+|++|||||||++|||.+.+.+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+++++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999998875 4 699999999999977 999999999999999999987653
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=358.04 Aligned_cols=215 Identities=33% Similarity=0.517 Sum_probs=179.4
Q ss_pred eEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHHhcceE
Q 001041 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWIRKKIG 463 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~r~~i~ 463 (1178)
|++++|++ . .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....|++++
T Consensus 4 ~l~~~~~~---~-~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---F-SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---E-EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 78999963 2 34 999999999999999999999999999999999999999999999986532 234577899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
|++|++.+|. .|++||+.|+.......+.. ..+.+.++.+ |++........+||||||||++||||++.+|+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~l~~~--gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~ 151 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERR-----ISFERVIELL--GIGHLLGRLPGRLSGGEKQRVAIGRALLSSPR 151 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHH-----HHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999986 59999999865432221111 1122334443 66666777788999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCch
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGA 614 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~ 614 (1178)
+|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...
T Consensus 152 lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 226 (354)
T TIGR02142 152 LLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLP 226 (354)
T ss_pred EEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcc
Confidence 9999999999999999999999988754 6899999999998865 9999999999999999999998765433
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=342.71 Aligned_cols=207 Identities=28% Similarity=0.469 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999963 4699999999999999999999999999999999999999999999999987642 24699
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.++. .|++||+.++... ....+.. ..+.+.++.+ |++........+||||||||++||||++.+
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--gl~~~~~~~~~~LSgGq~qrl~laral~~~ 146 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKV--GLEGAEKRYIWQLSGGQRQRVGIARALAAN 146 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 6999999875321 1221111 1122334443 455455566789999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEe--CCEEEEecChh
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH--RGKIVEKGTHS 605 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~--~G~i~~~g~~~ 605 (1178)
|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|+ +|++++.++.+
T Consensus 147 p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 147 PQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999998864 37899999999998865 99999998 59999987653
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=321.63 Aligned_cols=171 Identities=53% Similarity=0.927 Sum_probs=160.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++. ..++++|+||++++||+++|+||||||||||+++|.|+++|.+|+|.++|.++...+...+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4689999999743 236999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|+|.+|+.|+.||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
+||||||++||+.+...+.+.++++.+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999988877789999999999998899999999984
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=312.36 Aligned_cols=224 Identities=24% Similarity=0.449 Sum_probs=186.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRK 460 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~ 460 (1178)
+.+..+|+..+|.. +++++++||++++||+|++.||+|+||||...++.|+.+|++|+|.+||.|++.++.+. -|-
T Consensus 3 ~~L~a~~l~K~y~k---r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYKK---RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhCC---eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 35788999999964 46999999999999999999999999999999999999999999999999999999875 356
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
.|+|+||+|-+|. -||+|||..-.+. .+...+...+...+++.++.+ ++.......+..||||||.|+-|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~-~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEI-REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhh-hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 7999999999995 6999999864332 111111122222333344444 56777788899999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcc-hhhccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
+|+.+|||||+|++||.+...|++.|+.+.. +--+++.-|+.. ++.-|||.+++.+|+|...|+|+|+.+++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 9999999999999999999999999988754 445555558865 67889999999999999999999998863
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=330.37 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=163.0
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCcEEECCeecCCCCHHHH
Q 001041 383 DIELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
.+.++|++|.|+.. .++++|+|+||++++||+++|+||||||||||+++|.|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999854 35679999999999999999999999999999999999999 89999999999987764 356
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+++++|++|++.+|. .|++||+.++... . ..+....||||||||++||||+
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------~----------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC------K----------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh------c----------------------cccchhhCCHHHHHHHHHHHHH
Confidence 778999999998886 5999999864210 0 2234467999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecC-cchh-hccCEEEEEeCCEEEEec
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHR-LSTV-RNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~-~~~~-~~~d~i~~l~~G~i~~~g 602 (1178)
+++|+++||||||++||+++.+.+.+.++++.+ +.|+|+++|+ .+.+ ..||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998754 4576776654 5665 469999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=341.99 Aligned_cols=224 Identities=27% Similarity=0.440 Sum_probs=182.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee-----cCCCCHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-----LKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-----~~~~~~~~ 457 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999987 66666543
Q ss_pred ----HhcceEEEcCCCC--C-CcccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChH
Q 001041 458 ----IRKKIGLVSQEPV--L-FTGSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ----~r~~i~~v~Q~~~--l-~~~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgG 526 (1178)
.++.++|++|+|. + +..|+.+|+.+.. ......+. ...+.+.++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 2467999999984 2 3458888885321 10111111 12334556666 444 5677788899999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++.+|++|||||||++||+.+.+.+.+.+++..+ +.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999987643 7899999999999875 99999999999999999
Q ss_pred hhHHhcCCCchHH
Q 001041 604 HSKLVEDPEGAYS 616 (1178)
Q Consensus 604 ~~~l~~~~~~~~~ 616 (1178)
++++..++...|.
T Consensus 233 ~~~~~~~~~~~~~ 245 (253)
T TIGR02323 233 TDQVLDDPQHPYT 245 (253)
T ss_pred HHHHhcCCCCHHH
Confidence 9998765444444
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=336.38 Aligned_cols=208 Identities=30% Similarity=0.474 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HHh
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WIR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~r 459 (1178)
++++|+++.|+... ..++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 68999999996421 25699999999999999999999999999999999999999999999999999876643 457
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+.++|++|+|.+|. .|+.||+.++.. ..+.++... .+.+.++.+ |++........+||||||||++|||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrv~lar 154 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV--GLGDHLDYYPHNLSGGQKQRVAIAR 154 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHH
Confidence 88999999998886 799999987532 122222221 122334444 5555566667899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKI 598 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i 598 (1178)
|++++|+++||||||++||+++.+.+.+.++++.+ ++|+|++||+++....||+|++|++|++
T Consensus 155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999988763 7999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=322.25 Aligned_cols=170 Identities=34% Similarity=0.640 Sum_probs=156.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+ ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 468999999963 36999999999999999999999999999999999999999999999999987665 56778999
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
|++|+|.+|.+ |++||+. ||||||||++||||++.+|+
T Consensus 77 ~~~q~~~~~~~~tv~~~~~-----------------------------------------LS~G~~qrv~laral~~~p~ 115 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK-----------------------------------------LSGGMKQRLALAQALLHDPE 115 (173)
T ss_pred EEecCCccccCCcHHHHhh-----------------------------------------cCHHHHHHHHHHHHHHcCCC
Confidence 99999998875 9999984 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEE
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i 598 (1178)
++||||||++||+.+.+.+.+.++++. ++.|+|++||+.+.+. .||++++|++|++
T Consensus 116 illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 116 LLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999998875 4589999999999887 5999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=340.62 Aligned_cols=216 Identities=29% Similarity=0.426 Sum_probs=176.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCcEEECCeecCCCCHHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~ 458 (1178)
.++++|++++| + +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 48999999999 2 3599999999999999999999999999999999999999 999999999988632 222
Q ss_pred hcceEEEcCCCC-CCc--ccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 459 RKKIGLVSQEPV-LFT--GSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 459 r~~i~~v~Q~~~-l~~--~ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
++.++|++|+|. .|. .|+.+|+.+. .....++++++.++..++.+ .++.++....+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLEN--------AARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCC--------hhhhhhcCCcccCHHHHHHH
Confidence 457999999984 343 5888887532 11112233444444333211 12246777789999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 689999999999986 59999999999999999999987
Q ss_pred cCCC
Q 001041 609 EDPE 612 (1178)
Q Consensus 609 ~~~~ 612 (1178)
+++.
T Consensus 230 ~~~~ 233 (254)
T PRK10418 230 NAPK 233 (254)
T ss_pred hCCC
Confidence 6543
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=316.92 Aligned_cols=163 Identities=30% Similarity=0.493 Sum_probs=150.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+.. +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~~--~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPDG--RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCCC--CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 4689999999632 46999999999999999999999999999999999999999999999873 5899
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++|++.+++.|++||+.++ ....||||||||++||||++++|++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~-----------------------------------~~~~LS~G~~~rv~laral~~~p~~ 112 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP-----------------------------------WDDVLSGGEQQRLAFARLLLHKPKF 112 (166)
T ss_pred EECCCCccccccHHHHhhcc-----------------------------------CCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999863 2468999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCC
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1178)
+||||||++||+++.+.+.+.++++ ++|+|++||+++....||++++|++|
T Consensus 113 lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 113 VFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred EEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999999999999999999876 58999999999988889999999876
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=322.01 Aligned_cols=172 Identities=42% Similarity=0.678 Sum_probs=158.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC--HHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ--LQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~--~~~~r~~ 461 (1178)
|+++|++++|+. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ....++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 468999999963 46999999999999999999999999999999999999999999999999998775 5567889
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
++|++|+|.+|. .|++||+.+. ||||||||++||||++++
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~---------------------------------------lS~G~~qr~~la~al~~~ 118 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG---------------------------------------LSGGQQQRVALARALAMD 118 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec---------------------------------------CCHHHHHHHHHHHHHHCC
Confidence 999999998885 5999999753 999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCE
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGK 597 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~ 597 (1178)
|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||++++|++|+
T Consensus 119 p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 119 PDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999988764 589999999999998 499999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=330.48 Aligned_cols=202 Identities=33% Similarity=0.517 Sum_probs=168.7
Q ss_pred eEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHHhcceE
Q 001041 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWIRKKIG 463 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~r~~i~ 463 (1178)
|++++|++ ..+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.... ....+++++
T Consensus 5 ~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 89999964 234 99999999 999999999999999999999999999999999999886432 334677899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
|++|++.+|. .|++||+.++......+.. ...+.+.++.+ |++........+||||||||++||||++.+|+
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 151 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAAQPE 151 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHH-----HHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999885 6999999875432222111 11223444444 56666677888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 152 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 152 LLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999988753 689999999999986 59999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=324.98 Aligned_cols=183 Identities=29% Similarity=0.500 Sum_probs=161.1
Q ss_pred cEEEEeEEEECCCC---CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEECCeecCCCCHHH
Q 001041 383 DIELRDVYFSYPAR---PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~---~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
.|+++|++++|+.. .++++|+|+||++++||+++|+||+|||||||+++|+|++ +|.+|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48899999999742 0256999999999999999999999999999999999999 9999999999998864 35
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
.+++++|++|++.+|. .|++||+.++.. +. .||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~-------------------~~---------------~LS~G~~qrv~lara 125 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK-------------------LR---------------GLSGGERKRVSIALE 125 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH-------------------hc---------------cCCHHHHHHHHHHHH
Confidence 6788999999998886 599999975310 00 799999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcc-hhh-ccCEEEEEeCCEEEEec
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~~~-~~d~i~~l~~G~i~~~g 602 (1178)
++++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++ .+. .||++++|++|++++.|
T Consensus 126 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 126 LVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999998875 4789999999997 454 59999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-37 Score=332.90 Aligned_cols=205 Identities=26% Similarity=0.437 Sum_probs=172.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... +..++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 468999999963 46999999999999999999999999999999999999999999999998875322 24799
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|+||++.++. .|++||+.++.. ..+++++...++..+ ++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVD-----------LTNTGKKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcC-----------CcHHHhhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998875 699999986421 123344444444443 33334445578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999998875 4789999999999985 599999999999999998764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=316.52 Aligned_cols=220 Identities=28% Similarity=0.499 Sum_probs=188.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~i 462 (1178)
++.++++.+|+. -.+++|+||++++||+++|+|||||||||+.++|.|+|+|++|+|.++|.|+..++++.+ |..|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 568999999963 469999999999999999999999999999999999999999999999999999998875 5679
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCCC------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDDA------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~~------------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
+--+|.+.+| +.||-||+..+.... ..++-+...+ +.+.++.+ |+...-.+...+||+||+.
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~---A~~~Le~v--gL~~~a~~~A~~LsyG~qR 156 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER---ARELLEFV--GLGELADRPAGNLSYGQQR 156 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH---HHHHHHHc--CCchhhcchhhcCChhHhH
Confidence 9999999999 569999999863211 0111111112 22333333 7888888888899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|+.|||||..+|++||||||.+++.+.-...+.+.|+++.+ +.|+++|.|+++.+.. ||||+||+.|+++.+|+|+|
T Consensus 157 ~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 157 RLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred HHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHH
Confidence 99999999999999999999999999998899999998875 4899999999999865 99999999999999999999
Q ss_pred HhcCC
Q 001041 607 LVEDP 611 (1178)
Q Consensus 607 l~~~~ 611 (1178)
..+++
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 98763
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=321.30 Aligned_cols=172 Identities=24% Similarity=0.459 Sum_probs=156.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.++++|++++| +|+++||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++...+. ...|++
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 48899999988 7999999999999999999999999999999999999999999999999988764 456788
Q ss_pred eEEEcCCC----CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~----~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|++|++ .++..|++||+.++.. ||||||||++||||+
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~~-------------------------------------LS~G~~qrl~la~al 119 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSSL-------------------------------------LSGGNQQKVVLARWL 119 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHhh-------------------------------------cCHHHHHHHHHHHHH
Confidence 99999995 3446899999986421 999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+.+|+++||||||++||+++.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 120 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 120 ARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred ccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999998875 47899999999998876 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=323.60 Aligned_cols=182 Identities=26% Similarity=0.442 Sum_probs=159.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEECCeecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
.|+++|+++.|++.. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 488999999997421 256999999999999999999999999999999999986 489999999999875 4567
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++++|++|+|.++. .|++||+.++.. ++ +||||||||++||||++
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~~------------------------~LSgGe~qrv~la~al~ 124 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------LR------------------------GLSVEQRKRLTIGVELA 124 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------Hh------------------------cCCHHHhHHHHHHHHHh
Confidence 78999999998876 599999985310 00 89999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch--hhccCEEEEEeC-CEEEEec
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHR-GKIVEKG 602 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~-G~i~~~g 602 (1178)
++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++. ...||+|++|++ |++++.|
T Consensus 125 ~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 125 AKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred cCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999998865 37899999999984 456999999999 9999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=326.06 Aligned_cols=227 Identities=30% Similarity=0.479 Sum_probs=188.1
Q ss_pred cccEEEEeEEEECCCCCC--------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC
Q 001041 381 RGDIELRDVYFSYPARPN--------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~--------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1178)
..-++.+|+...||-+.. ..+++++||++++||.++|||+||||||||-.+|+|++++. |+|.++|.++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 345888999999975422 34789999999999999999999999999999999999776 999999999998
Q ss_pred CCHHH---HhcceEEEcCCCC--C-CcccHHHHHhcC----CCCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcC
Q 001041 453 FQLQW---IRKKIGLVSQEPV--L-FTGSIKDNIAYG----KDDATT----EEIRVATELANAAKFIDKLPQGIDTLVGE 518 (1178)
Q Consensus 453 ~~~~~---~r~~i~~v~Q~~~--l-~~~ti~~ni~~~----~~~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~ 518 (1178)
.+.+. +|+++-+|+|||+ | -..||.+-|.=| .|..+. +++.++++.++++. .....
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp----------~~r~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDP----------ATRNR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCCh----------hHhhc
Confidence 88765 5789999999996 2 245776666544 233332 34444444444332 23467
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeC
Q 001041 519 HGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1178)
Q Consensus 519 ~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1178)
..+.+|||||||||||||+.-+|++++|||||||||.....+|.+.++++.+ +-+-++|+|++..++. ||+|+||.+
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 7789999999999999999999999999999999999999999999988754 5588999999999976 999999999
Q ss_pred CEEEEecChhHHhcCCCchHHHH
Q 001041 596 GKIVEKGTHSKLVEDPEGAYSQL 618 (1178)
Q Consensus 596 G~i~~~g~~~~l~~~~~~~~~~~ 618 (1178)
|+|||+|+.+++.+++...|.+-
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHHH
Confidence 99999999999999988888754
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=322.37 Aligned_cols=185 Identities=29% Similarity=0.499 Sum_probs=161.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHHH-hc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-RK 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r~ 460 (1178)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|.|+ ++|++|+|.+||.++.+.+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 468999999963 4699999999999999999999999999999999999 58999999999999988876554 55
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+++|+||+|.++.+ ++++|+ .. ...+||||||||++||||+++
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l-------------------------~~-----------~~~~LS~G~~qrv~laral~~ 121 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL-------------------------RY-----------VNEGFSGGEKKRNEILQLLLL 121 (200)
T ss_pred cEEEeecChhhccCccHHHHH-------------------------hh-----------ccccCCHHHHHHHHHHHHHhc
Confidence 69999999988865 555554 00 114799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh--ccCEEEEEeCCEEEEecChhHHh
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR--NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~--~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.| +.++.
T Consensus 122 ~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 122 EPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 9999999999999999999999999988754 789999999999987 69999999999999998 44453
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.96 Aligned_cols=210 Identities=25% Similarity=0.406 Sum_probs=171.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+..+
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i 80 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLV 80 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceE
Confidence 4899999999963 2469999999999999999999999999999999999999999999999988742 1123469
Q ss_pred EEEcCCCCC---CcccHHHHHhcCCCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 463 GLVSQEPVL---FTGSIKDNIAYGKDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 463 ~~v~Q~~~l---~~~ti~~ni~~~~~~-------~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
+|+||+|.+ +..++++|+.++... .. .+++..+++.. |+.........+|||||||
T Consensus 81 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~q 149 (272)
T PRK15056 81 AYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV-----------DMVEFRHRQIGELSGGQKK 149 (272)
T ss_pred EEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHH
Confidence 999999864 456899998754210 01 12223333333 3333344556789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+++++ +|++++.|+++++
T Consensus 150 rv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~ 228 (272)
T PRK15056 150 RVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETT 228 (272)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhc
Confidence 9999999999999999999999999999999999998875 4789999999999875 59999777 8999999999987
Q ss_pred hc
Q 001041 608 VE 609 (1178)
Q Consensus 608 ~~ 609 (1178)
..
T Consensus 229 ~~ 230 (272)
T PRK15056 229 FT 230 (272)
T ss_pred cC
Confidence 54
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=328.51 Aligned_cols=198 Identities=29% Similarity=0.504 Sum_probs=161.9
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH----HHHhcc
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRKK 461 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~~ 461 (1178)
++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...+++
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4689999963 469999999999999999999999999999999999999999999999999765432 235678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++|++|+|.+|. .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++||||++
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~lS~G~~qr~~laral~ 150 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKRE-----KKKEALEKV--GLNLKLKQKIYELSGGEQQRVALARAIL 150 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999999886 7999999874321 11111111 112223332 4444456667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhccCEEEEE
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|
T Consensus 151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 151 KDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999988753 78999999999988889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=333.98 Aligned_cols=218 Identities=24% Similarity=0.417 Sum_probs=175.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.++++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|.|+ ++|++|+|.++|.++...+....+.
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999963 3699999999999999999999999999999999998 6899999999999998887666554
Q ss_pred -ceEEEcCCCCCCcc-cHHHHHhcCCCCC------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCC-CCChHHHHH
Q 001041 461 -KIGLVSQEPVLFTG-SIKDNIAYGKDDA------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGT-QLSGGQKQR 530 (1178)
Q Consensus 461 -~i~~v~Q~~~l~~~-ti~~ni~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~-~lSgGqkqr 530 (1178)
.++|++|++.++.+ |+++|+.++.... .+....+.. ..+.+.++.+ |+. +..+.... .||||||||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~l~~~~~~~~~~~~LSgG~~qr 159 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKLV--GMDPSFLSRNVNEGFSGGEKKR 159 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHHc--CCchhhhccccccCCCHHHHHH
Confidence 58999999998864 7999987642100 000000000 1112223332 333 33445544 599999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 607 (1178)
++||||++++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++.+
T Consensus 160 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 160 NEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChhhh
Confidence 999999999999999999999999999999999998875 47899999999998875 899999999999999998743
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=333.61 Aligned_cols=219 Identities=25% Similarity=0.369 Sum_probs=168.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCCCcEEECCeecCCCCHHHHh-c
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIR-K 460 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r-~ 460 (1178)
|+++|+++.|++ .++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.++...+....+ .
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999963 36999999999999999999999999999999999994 69999999999999887766554 5
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCCCCC---CHHH-HHHHHHHhcHHHHHH--hCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLFTG-SIKDNIAYGKDDA---TTEE-IRVATELANAAKFID--KLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~~~~---~~~~-~~~~~~~~~~~~~i~--~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
.++|++|+|.++.. |..+++.+..... ...+ .........+.+.++ .+|+++.+... ..+||||||||++|
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~--~~~LS~G~~qrv~l 156 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV--NVGFSGGEKKRNDI 156 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC--CCCCCHHHHHHHHH
Confidence 79999999987653 5555543211100 0000 000000001112222 23333333211 13799999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhHH
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|||++++|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. +|+|++|++|++++.|+++..
T Consensus 157 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~ 233 (248)
T PRK09580 157 LQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLV 233 (248)
T ss_pred HHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999887654 6899999999999876 899999999999999988754
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=294.06 Aligned_cols=216 Identities=31% Similarity=0.524 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~---------- 452 (1178)
.++++|+..+|+. ..+|+++||+.++|+.+.|+|.|||||||++++|.=+-.|+.|.|.++|..++-
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5889999999974 359999999999999999999999999999999999999999999999987632
Q ss_pred ---CCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCC-----CCHHHHH---HHHHHhcHHHHHHhCCCCccchhcCCC
Q 001041 453 ---FQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDD-----ATTEEIR---VATELANAAKFIDKLPQGIDTLVGEHG 520 (1178)
Q Consensus 453 ---~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~-----~~~~~~~---~~~~~~~~~~~i~~~~~g~~t~~~~~g 520 (1178)
-..+.+|.++++|+|+-.|. ..|+-||+.- .|- ...+.++ ..+.++ |+........
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViE-aPvhVLg~~k~ea~e~Ae~~L~kV-----------Gi~ek~~~YP 150 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIE-APVHVLGVSKAEAIERAEKYLAKV-----------GIAEKADAYP 150 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHh-cchHhhcCCHHHHHHHHHHHHHHh-----------CchhhhhcCc
Confidence 12456889999999998887 4799999873 231 1122222 223333 5555555667
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
..|||||+||++|||||..+|+++|+|||||||||+-.-.+.+.++++. .++|.++|||-+.+.++ +.+|+.|++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 8999999999999999999999999999999999998888888888775 58999999999999987 799999999999
Q ss_pred EEecChhHHhcCCCc
Q 001041 599 VEKGTHSKLVEDPEG 613 (1178)
Q Consensus 599 ~~~g~~~~l~~~~~~ 613 (1178)
-|+|+|+++..++..
T Consensus 231 EE~G~P~qvf~nP~S 245 (256)
T COG4598 231 EEEGPPEQVFGNPQS 245 (256)
T ss_pred cccCChHHHhcCCCC
Confidence 999999999987654
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=329.05 Aligned_cols=207 Identities=29% Similarity=0.452 Sum_probs=166.0
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCcEEECCeecCCCCHHHHhcceEEEcCCCC-CCc--
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LFT-- 473 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~-l~~-- 473 (1178)
+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... ...+++++|++|+|. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988654 223468999999995 343
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCcc---chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeC
Q 001041 474 GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGID---TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548 (1178)
Q Consensus 474 ~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~---t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe 548 (1178)
.|+.+|+.+.... ...++.. ..+.+.++.+ |++ +.......+||||||||++||||++++|+++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQAR-----ALILEALEAV--GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHH-----HHHHHHHHHc--CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 5899998653211 1111110 0112223332 332 45667778999999999999999999999999999
Q ss_pred CCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 549 ATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 549 ~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 222 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHH
Confidence 9999999999999999988753 689999999999986 5999999999999999999999765444333
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=330.70 Aligned_cols=210 Identities=25% Similarity=0.435 Sum_probs=174.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
+++|+++. .+|+|+||++++||+++|+|+||||||||+++|.|++++ +|+|.++|.++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEE
Confidence 46677764 279999999999999999999999999999999999864 8999999999988888888888999
Q ss_pred EcCCCC-CCcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc---
Q 001041 465 VSQEPV-LFTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK--- 539 (1178)
Q Consensus 465 v~Q~~~-l~~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~--- 539 (1178)
++|++. ++..|+++|+.++.+.. ..++.. ..+.+.++.+ |++.........||||||||++||||++.
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~ 146 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVA-----SALNEVAEAL--GLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWP 146 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHH-----HHHHHHHHHc--CCHhHhcCCcccCCHHHHHHHHHHHHHhcccc
Confidence 999985 45789999999864321 111111 1122334443 55555566778999999999999999997
Q ss_pred ----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 540 ----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 540 ----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
+|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 147 ~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 147 DINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 679999999999999999999999998875 4789999999999775 599999999999999999988754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=372.60 Aligned_cols=228 Identities=28% Similarity=0.453 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCC--------CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC
Q 001041 383 DIELRDVYFSYPARP--------NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~--------~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1178)
.++++|+++.|+.+. ...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996321 236999999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhcceEEEcCCCC--CC-cccHHHHHhcCCC--C-CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCC
Q 001041 455 LQ---WIRKKIGLVSQEPV--LF-TGSIKDNIAYGKD--D-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLS 524 (1178)
Q Consensus 455 ~~---~~r~~i~~v~Q~~~--l~-~~ti~~ni~~~~~--~-~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lS 524 (1178)
.. .+|++|+||+|+|. ++ ..||.+|+.++.. . ...++.. ..+.+.++.+ |++ ........+||
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~L~~~--gL~~~~~~~~~~~LS 465 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----ARVAWLLERV--GLLPEHAWRYPHEFS 465 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHHHc--CCCHHHhhCCcccCC
Confidence 43 35678999999983 55 4699999976421 1 1111111 1112333333 453 34456677899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEe
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~ 601 (1178)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 466 gGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~ 545 (623)
T PRK10261 466 GGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEI 545 (623)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999988753 6899999999999865 999999999999999
Q ss_pred cChhHHhcCCCchHHH
Q 001041 602 GTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 602 g~~~~l~~~~~~~~~~ 617 (1178)
|+++++..++...|.+
T Consensus 546 g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 546 GPRRAVFENPQHPYTR 561 (623)
T ss_pred cCHHHHhcCCCCHHHH
Confidence 9999998766666654
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=329.09 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 4889999999963 4699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEcCCCCCCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~---~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|+|.++. .|+++|+.+. +...++++..+++..++.+. .......||||||||++||||++.
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq~qrv~laral~~ 137 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHL-----------IDAPMQKLSGGETQRVLLARALLN 137 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHH-----------HhCChhhCCHHHHHHHHHHHHHhc
Confidence 99999997764 4899998753 23345566666666655443 334457899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||+|++|++ ++++.|+++++... ..+.
T Consensus 138 ~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~--~~~~ 214 (251)
T PRK09544 138 RPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLH--PEFI 214 (251)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCC--HHHH
Confidence 9999999999999999999999999987753 789999999999985 4999999965 79999999998653 3344
Q ss_pred HHH
Q 001041 617 QLI 619 (1178)
Q Consensus 617 ~~~ 619 (1178)
+++
T Consensus 215 ~~~ 217 (251)
T PRK09544 215 SMF 217 (251)
T ss_pred HHh
Confidence 443
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=316.48 Aligned_cols=177 Identities=34% Similarity=0.592 Sum_probs=157.1
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+...++..++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 46899999963 469999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001041 465 VSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1178)
Q Consensus 465 v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~il 544 (1178)
++| +++..++.++ +.....+||||||||++||||++++|+++
T Consensus 78 ~~q---------------------------~l~~~gl~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ll 119 (180)
T cd03214 78 VPQ---------------------------ALELLGLAHL-----------ADRPFNELSGGERQRVLLARALAQEPPIL 119 (180)
T ss_pred HHH---------------------------HHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999 3444444333 33456789999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 545 LLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
||||||++||+++...+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 120 llDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999988754 689999999999985 59999999999998654
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=299.05 Aligned_cols=213 Identities=25% Similarity=0.477 Sum_probs=181.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+.+|++++-. ++.+|+++||+++|||.++|+||||+|||||+++|.|++.|.+|++.++|+++++.+..++-++-+
T Consensus 2 i~a~nls~~~~---Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLA---GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEee---cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 67889998875 356999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCCC----C--HHH--HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 464 LVSQEPVL-FTGSIKDNIAYGKDDA----T--TEE--IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 464 ~v~Q~~~l-~~~ti~~ni~~~~~~~----~--~~~--~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+.||+..+ |.-|++|-+.+|.-.. . +++ ..+++..+++. .+ -++.-..||||||||+.||
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~----~l-------a~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLS----GL-------AGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChh----hh-------hccchhhcCchHHHHHHHH
Confidence 99999875 8999999999986322 1 111 23444444332 22 2344467999999999999
Q ss_pred HHhcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhH
Q 001041 535 RAILK------DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 535 Ral~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
|.|.+ ++++|+||||||+||....+.+.+..+++. .+..|+.|-|+++... .||||++|.+||++..|+|++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99986 456999999999999999999998888875 4689999999999875 599999999999999999999
Q ss_pred HhcC
Q 001041 607 LVED 610 (1178)
Q Consensus 607 l~~~ 610 (1178)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=318.59 Aligned_cols=195 Identities=25% Similarity=0.375 Sum_probs=165.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 468999999963 46999999999999999999999999999999999999999999999999886543 45778999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
|++|++.++ ..|++||+.+..+...++++.++++..++.+. ......+||||||||++||||++++|+
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~laral~~~p~ 145 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF-----------EDRPVAQLSAGQQRRVALARLLLSGRP 145 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh-----------hcCchhhCCHHHHHHHHHHHHHhcCCC
Confidence 999999876 68999999876543445555555555554332 233456899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchh-hccCEEEEE
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV-RNADMIAVI 593 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~-~~~d~i~~l 593 (1178)
++||||||++||+.+.+.+.+.+++.. +++|+|++||+...+ ..+|+++++
T Consensus 146 llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 146 LWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999998764 478999999987765 458998877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=288.82 Aligned_cols=210 Identities=28% Similarity=0.418 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH---HH
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ---WI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~---~~ 458 (1178)
-|++++++.+-+... .-.+|++++|.|++||.++||||||||||||+..+.|+-+|++|+|.+.|+++.+++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 367778877765432 34699999999999999999999999999999999999999999999999999999865 45
Q ss_pred h-cceEEEcCCCCCC-cccHHHHHhcCCCCCC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 459 R-KKIGLVSQEPVLF-TGSIKDNIAYGKDDAT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 459 r-~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
| +++++|+|.-+|. +.|--||+..+..-.. .+.... ..+.++.. |+...+.....+||||++||+||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~------A~~lL~~v--GLg~Rl~HyP~qLSGGEQQRVAi 157 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAG------AKALLEAV--GLGKRLTHYPAQLSGGEQQRVAL 157 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHH------HHHHHHHh--CcccccccCccccCchHHHHHHH
Confidence 5 6799999999876 7899999987543211 111111 12223332 77777777888999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
|||+...|+||+-||||-+||..|.+.|.+.+-.+. .+.|.++|||++....+|||++.|.+|++++
T Consensus 158 ARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 158 ARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999988875543 4679999999999999999999999999975
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=306.11 Aligned_cols=159 Identities=33% Similarity=0.582 Sum_probs=147.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcce
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i 462 (1178)
|+++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 468999999964 369999999999999999999999999999999999999999999999999988775 4467789
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+|++| ||||||||++||||++++|+
T Consensus 78 ~~~~q-------------------------------------------------------LS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 78 AMVYQ-------------------------------------------------------LSVGERQMVEIARALARNAR 102 (163)
T ss_pred EEEEe-------------------------------------------------------cCHHHHHHHHHHHHHhcCCC
Confidence 99999 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
++||||||++||+++.+.+.+.++++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999998874 47899999999998765 99999999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=325.19 Aligned_cols=194 Identities=32% Similarity=0.478 Sum_probs=160.8
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHHHHH
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNI 480 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni 480 (1178)
|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|+|.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876543 2489999998886 6999999
Q ss_pred hcCC----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 001041 481 AYGK----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 481 ~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1178)
.++. +..++++... .+.+.++.+ |++........+||||||||++||||++++|+++||||||++||+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALV--GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHc--CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 8742 1222222111 112233333 4454555667789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 557 SEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 557 ~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
+.+.+.+.+.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 99999999988653 6899999999998765 999999999999998876655
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-36 Score=327.99 Aligned_cols=196 Identities=26% Similarity=0.440 Sum_probs=158.7
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEc-CCCCCC-cccH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-QEPVLF-TGSI 476 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~-Q~~~l~-~~ti 476 (1178)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ....+++++|++ |++.++ ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999886543 345677899997 566665 6799
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 001041 477 KDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1178)
Q Consensus 477 ~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1178)
+||+.+... ....++..+.. .+.++.+ |++.........||||||||++||||++.+|+++||||||++||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 185 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRL-----DELSELL--DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLD 185 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 999976422 12222222211 1222222 34333444556899999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 555 AESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 555 ~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 186 VVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999988753 6899999999998865 9999999999998764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=292.86 Aligned_cols=210 Identities=29% Similarity=0.481 Sum_probs=169.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+..++++.+|+..+ .++|+|+|++|.+||++++.||||||||||++++.|+++|..|+|.+||..+..-.. .=|
T Consensus 4 l~~~~~sl~y~g~~-~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCcc-hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 56788999998654 569999999999999999999999999999999999999999999999988765543 358
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
.|+|++-|+. -++.||+.||..-.. +.++.+....++.+... |++..-......||||||||+.|||||..+|+
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l~G---i~k~~R~~~a~q~l~~V--gL~~~~~~~i~qLSGGmrQRvGiARALa~eP~ 152 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALV--GLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ 152 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHh--CcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence 9999998886 799999999854211 11111112222222221 44333345567899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEe--CCEEEEecCh
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIH--RGKIVEKGTH 604 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~--~G~i~~~g~~ 604 (1178)
.|+||||++|||+-|.+++|+.+.++. .++.+++|||+++..- .+++++||+ .|+|++.=++
T Consensus 153 ~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 153 LLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred eEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999999999999987765 4789999999999865 599999997 5799876443
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=313.72 Aligned_cols=198 Identities=32% Similarity=0.512 Sum_probs=169.1
Q ss_pred cEEEEeEEEECCCCCC------CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH
Q 001041 383 DIELRDVYFSYPARPN------EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~------~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~ 456 (1178)
-++++|++..|+.... ..+++||||+|++||.++|||+|||||||+.++|+|+++|++|+|.++|.|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 3788999999975321 36899999999999999999999999999999999999999999999998876655
Q ss_pred HHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 457 WIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
.....+++.+.++.+++.+. ......+.||||||||++||||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~----------~~~ryPhelSGGQrQRi~IARA 123 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEE----------FLYRYPHELSGGQRQRIGIARA 123 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHH----------HhhcCCcccCchhhhhHHHHHH
Confidence 11123456666665554332 3456668999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1178)
|.-+|+++++|||+|+||.-.+.++.+.+.++. .+-|.++|||+++.+++ ||||.||..|+|+|.|+.+++..++..
T Consensus 124 Lal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~H 203 (268)
T COG4608 124 LALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLH 203 (268)
T ss_pred HhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCC
Confidence 999999999999999999999999999987765 36799999999999987 999999999999999999999999888
Q ss_pred hHHHHHH
Q 001041 614 AYSQLIR 620 (1178)
Q Consensus 614 ~~~~~~~ 620 (1178)
.|.+..-
T Consensus 204 pYTk~Ll 210 (268)
T COG4608 204 PYTKALL 210 (268)
T ss_pred HHHHHHH
Confidence 8887653
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=315.73 Aligned_cols=193 Identities=22% Similarity=0.374 Sum_probs=160.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 469999999999999999999999999999999999999999999999998865 3456778999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|++|++.++ ..|++||+.++... ..+.++ .+.++.+ |+.........+||||||||++||||++++|
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~---------~~~l~~~--~l~~~~~~~~~~LS~G~~~rv~laral~~~p 146 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGI---------TELCRLF--SLEHLIDYPCGLLSSGQKRQVALLRLWMSKA 146 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHH---------HHHHHHc--CCchhhhCChhhcCHHHHHHHHHHHHHhcCC
Confidence 999999886 58999999975311 111222 2333333 2222334445679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEE
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
++|||||||++||+.+...+.+.++++. +++|+|++||+.+.+..||.-.
T Consensus 147 ~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 147 KLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred CEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 9999999999999999999999998864 4789999999999999998644
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=316.24 Aligned_cols=195 Identities=22% Similarity=0.333 Sum_probs=163.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 688999999963 36999999999999999999999999999999999999999999999999987654 34567899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|++|++.++. .|++||+.++.+. ..++++..+++..++. .........||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-----------GFEDVPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-----------HHhhCChhhcCHHHHHHHHHHHHHhc
Confidence 9999998875 6999999875432 1233444444444443 23344567899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEE
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVI 593 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l 593 (1178)
+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998764 46899999999999965 4677776
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=296.10 Aligned_cols=213 Identities=28% Similarity=0.485 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++||+.+|++ +.+++++|++|++|.+++++||+|+|||||+..+.|++++++|+|.+||.++.+.+.+.|.++++
T Consensus 2 I~i~nv~K~y~~---~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYGT---KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhCC---EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 788999999963 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCCCH--------HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDDATT--------EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~~~--------~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+..|+.++- .-||||=+.||+-.++. ..+.++++-.+ +...-++.-..||||||||.-+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~-----------L~~l~dryLd~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLH-----------LEDLSDRYLDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhc-----------ccchHHHhHHhcccchhhhhhhh
Confidence 999999876 67999999999744432 22223332222 23333344457999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
..++++.|.++||||+.+||.+....+.+.++++.. +||+++|-|+.++... +|+|+-|++|+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~ 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH
Confidence 999999999999999999999998888888877643 7999999999999875 899999999999999999999874
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=310.51 Aligned_cols=416 Identities=16% Similarity=0.219 Sum_probs=259.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 165 GRMSGDTVLIQDAMGEKVGKFLQLMATFLGG-FLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAA 243 (1178)
Q Consensus 165 ~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (1178)
.|++.|+++.-..+.+.....+...+.++.. +-+.-..+|+-...++..+.+-.++...+.+.+.+...++++...+..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 5888999888777664444444433333222 222223334333333333333333344444444455545555555555
Q ss_pred HHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHhc
Q 001041 244 SVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ---EGLAAGIGLGMV-MLIVFCSYAL---SVWYGGKLILEE 316 (1178)
Q Consensus 244 ~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~---~~~~g~~~~~~~ 316 (1178)
-.-.+...|...|..|+.++.+........+........ ..++.++..... .+..++.+++ .++.| + .-.
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~-h--~y~ 342 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSG-H--VYD 342 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecc-c--ccC
Confidence 555566678888999998877665554443333322221 122222211111 1111111110 01111 0 112
Q ss_pred CCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CC----------CCCcCC-------C
Q 001041 317 GYNGGQVVNVM----VAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR---KP----------EIDAYD-------T 372 (1178)
Q Consensus 317 ~~~~~~~~~~~----~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~---~~----------~~~~~~-------~ 372 (1178)
.+++..+...+ .+++.+...++.+......+.+-..-..|+-|+.+. .. ++..+. .
T Consensus 343 ~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~ 422 (659)
T KOG0060|consen 343 DLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPP 422 (659)
T ss_pred CcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCC
Confidence 33444443322 112222223333322222233333334444433221 00 000000 0
Q ss_pred CCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC
Q 001041 373 KGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1178)
Q Consensus 373 ~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1178)
......+.+..|++++|++.-|++ +..+.+|+||+|+.|+.+.|+||||||||+|++.+.|+.+..+|++.-....-
T Consensus 423 G~~~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-- 499 (659)
T KOG0060|consen 423 GSGKAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-- 499 (659)
T ss_pred CCcccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--
Confidence 001112234679999999998875 45677889999999999999999999999999999999999999997643210
Q ss_pred CCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCC
Q 001041 453 FQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-------DDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLS 524 (1178)
Q Consensus 453 ~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~~lS 524 (1178)
-+.+-|+||.|.+-.||+||-+.++. ...+++++.+.++.+++...++. .+|+|+++ -+-...||
T Consensus 500 ------~~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 500 ------PKDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLS 572 (659)
T ss_pred ------CCceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcC
Confidence 03599999999999999999999972 23678999999999999886655 46888665 45567899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+||+||+|.||-+|.+|++-+|||+|||||.+.|..+.+.+++. +-|.|.|.||.+..+.=|.++-|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999999999999999999999999888775 7899999999999999999999976
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=359.97 Aligned_cols=222 Identities=28% Similarity=0.491 Sum_probs=181.0
Q ss_pred cEEEEeEEEECCCC--------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC
Q 001041 383 DIELRDVYFSYPAR--------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~--------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1178)
.|+++|+++.|+.. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++ .+|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 48999999999621 12469999999999999999999999999999999999984 8999999999987766
Q ss_pred HHH---HhcceEEEcCCC--CCCc-ccHHHHHhcCCCC----CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCC
Q 001041 455 LQW---IRKKIGLVSQEP--VLFT-GSIKDNIAYGKDD----ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQL 523 (1178)
Q Consensus 455 ~~~---~r~~i~~v~Q~~--~l~~-~ti~~ni~~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~l 523 (1178)
... +|.+++|++|+| .++. .|++||+.++... ....+.. ..+.+.++.+ |+. ........+|
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~L 426 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVMEEV--GLDPETRHRYPAEF 426 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHHHHc--CCCHHHHhcCCccC
Confidence 443 467899999998 3554 6999999875210 1111111 1122334443 453 2356677899
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
|||||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 427 SgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 6899999999998865 99999999999999
Q ss_pred ecChhHHhcCCC
Q 001041 601 KGTHSKLVEDPE 612 (1178)
Q Consensus 601 ~g~~~~l~~~~~ 612 (1178)
.|+++++...+.
T Consensus 507 ~~~~~~~~~~~~ 518 (529)
T PRK15134 507 QGDCERVFAAPQ 518 (529)
T ss_pred EcCHHHHhcCCC
Confidence 999999876543
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=312.56 Aligned_cols=196 Identities=20% Similarity=0.292 Sum_probs=162.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++++++||++++||+++|+|+||||||||+++|.|+++|++|+|.++|.++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999963 3599999999999999999999999999999999999999999999999988652 335679
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCCC--CC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKDD--AT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~~--~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|++.++.. |++||+.++... .. ++.....++ .+ |+.........+||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~---------~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALA---------IV--GLAGYEDTLVRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHH---------Hc--CChhhccCChhhCCHHHHHHHHHHHHHh
Confidence 999999988875 999999764321 11 122222222 22 3333345556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHR 595 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~ 595 (1178)
++|+++||||||++||+++.+.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998754 46899999999999865 899999864
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=310.73 Aligned_cols=193 Identities=23% Similarity=0.315 Sum_probs=158.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 468999999963 46999999999999999999999999999999999999999999999999987765 35577899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
|++|++.++. .|++||+.+..+... ++++.++++..++.+ .......+||||||||++||||++++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrv~la~al~~~ 145 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG-----------FEDLPAAQLSAGQQRRLALARLWLSR 145 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH-----------HhcCChhhcCHHHHHHHHHHHHHhcC
Confidence 9999998875 799999986532211 223444555444433 23445568999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEE
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAV 592 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~ 592 (1178)
|+++||||||++||+.+.+.+.+.++++. +++|+|++||+...+. +++++.
T Consensus 146 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 146 APLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 99999999999999999999999998763 5789999999985443 366554
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=365.17 Aligned_cols=203 Identities=24% Similarity=0.385 Sum_probs=171.9
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT- 473 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~- 473 (1178)
++++|+|+|+++++||+++|+||||||||||+++|.|..+|. +|+|.+||.++. ...+|+.++||+|+++++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 467999999999999999999999999999999999998874 799999999875 3567889999999999984
Q ss_pred ccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC--CCCCChHHHHHHHHHHHhccCCCEE
Q 001041 474 GSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH--GTQLSGGQKQRIAIARAILKDPRIL 544 (1178)
Q Consensus 474 ~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~--~~~g~~t~~~~~--g~~lSgGqkqri~lARal~~~~~il 544 (1178)
.||+|||.|+... .+.++. ...+++.++. +++..||.+|+. +..||||||||++|||||+.+|+++
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vl 188 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKEK-----RERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLL 188 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHHH-----HHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEE
Confidence 6999999985321 122211 1122333444 445678999984 4789999999999999999999999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcc-h-hhccCEEEEEeCCEEEEecChhHHh
Q 001041 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-T-VRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~-~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+||||||+||+.+...+.+.++++. +++|+|+++|+++ . ...+|++++|++|++++.|+++++.
T Consensus 189 llDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 189 FCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred EeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 9999999999999999999998875 4799999999996 3 5679999999999999999999885
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-35 Score=320.31 Aligned_cols=208 Identities=24% Similarity=0.345 Sum_probs=169.3
Q ss_pred cEEEEeEEEECCCC-----------------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 383 DIELRDVYFSYPAR-----------------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~-----------------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
.|+++|++..|... ...++|+|+||+|++||+++|+||||||||||+++|+|+++|.+|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 46777777666431 1246899999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
+| .+++++|++.++ ..|+++|+.++. ...+.++...... +.+..+ |++..+.....+
T Consensus 84 ~g-------------~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~-----~~l~~~--~l~~~~~~~~~~ 143 (264)
T PRK13546 84 NG-------------EVSVIAISAGLSGQLTGIENIEFKMLCMGFKRKEIKAMTP-----KIIEFS--ELGEFIYQPVKK 143 (264)
T ss_pred CC-------------EEeEEecccCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhcCCccc
Confidence 98 367888998776 469999997632 1223333322111 111111 445556667789
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
||||||||++||||++++|++|||||||++||+.+.+.+.+.+.++. .++|+|++||+++.+.. ||+|++|++|++++
T Consensus 144 LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~ 223 (264)
T PRK13546 144 YSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223 (264)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999887764 47899999999999865 99999999999999
Q ss_pred ecChhHHhcC
Q 001041 601 KGTHSKLVED 610 (1178)
Q Consensus 601 ~g~~~~l~~~ 610 (1178)
.|+++++.+.
T Consensus 224 ~g~~~~~~~~ 233 (264)
T PRK13546 224 YGELDDVLPK 233 (264)
T ss_pred eCCHHHHHHH
Confidence 9999998875
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=276.10 Aligned_cols=219 Identities=28% Similarity=0.466 Sum_probs=176.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe--ecCCCC----HH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEFQ----LQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~--~~~~~~----~~ 456 (1178)
.|++++++|.|+. ..+|.||+|+.+.||.+.+.||||+|||||++.|.=+--|.+|+..|.|. |.+..+ ..
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 4889999999974 35999999999999999999999999999999998888899999999764 444333 35
Q ss_pred HHhcceEEEcCCCCCC-cccHHHHHhcCCCC----CCH-HH---HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 457 WIRKKIGLVSQEPVLF-TGSIKDNIAYGKDD----ATT-EE---IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~----~~~-~~---~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
++|+.+|+|+|.-++. ..||.||+.- .|. .++ +. ..+.++..++.++-. +-.-.|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enlie-ap~kv~gl~~~qa~~~a~ellkrlrl~~~ad-----------r~plhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIE-APCRVLGLSKDQALARAEKLLKRLRLKPYAD-----------RYPLHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHh-hhHHHhCCCHHHHHHHHHHHHHHhccccccc-----------cCceecccch
Confidence 7899999999999888 5799999973 231 112 21 222333333333333 3346799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
+||++|||||+.+|++|++||||+||||+-..++.+.|+++.. |-|-++|||..+..+. |.+|+.|++|+|+|.|+++
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999998899999998764 6799999999999876 9999999999999999988
Q ss_pred HHhcCCCchHH
Q 001041 606 KLVEDPEGAYS 616 (1178)
Q Consensus 606 ~l~~~~~~~~~ 616 (1178)
..-+...+.|.
T Consensus 227 ~ft~p~te~f~ 237 (242)
T COG4161 227 CFTEPQTEAFK 237 (242)
T ss_pred hccCccHHHHH
Confidence 76544333333
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=310.36 Aligned_cols=195 Identities=24% Similarity=0.351 Sum_probs=162.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|+++.|+. ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. .|.++
T Consensus 2 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~ 75 (207)
T PRK13539 2 MLEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEAC 75 (207)
T ss_pred EEEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhc
Confidence 3789999999963 359999999999999999999999999999999999999999999999998652 22 77889
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|++.++ ..|++||+.+... ...++++.++++..++.+ .......+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 76 HYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-----------LAHLPFGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred EEecCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-----------HHcCChhhcCHHHHHHHHHHHHHhc
Confidence 9999988765 6899999976432 122344445555444433 2233446899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. |+++.++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999998753 57899999999999988 99988854
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=333.61 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=167.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++|+|+....+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58899999999764445799999999999999999999999999999999999999999999999641
Q ss_pred EEEcCCCCCC-cccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
++.+.+.++ ..|++||+.++. ...+.++..+.+ .+.++.+ |++.........||||||||++||||++.
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i-----~elLe~l--gL~~~ld~~~~~LSGGQrQRVaLArAL~~ 160 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII-----PEIIEFA--DIGKFIYQPVKTYSSGMKSRLGFAISVHI 160 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHH-----HHHHHHc--CChhHhhCCcccCCHHHHHHHHHHHHHHh
Confidence 233344444 369999998642 122333322211 1122222 34444556678899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 161 ~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~ 233 (549)
T PRK13545 161 NPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH 233 (549)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 999999999999999999999999998764 47899999999999865 999999999999999999998764
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=357.44 Aligned_cols=202 Identities=28% Similarity=0.450 Sum_probs=168.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC--CCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-cc
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ--AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GS 475 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~--~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~t 475 (1178)
+.+|+|+|+++++||+++|+||||||||||+++|.|..+|. +|+|.+||.++.. ..+++++||+|++.++. .|
T Consensus 81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccccCCcCC
Confidence 56999999999999999999999999999999999999885 8999999998742 34567999999999885 69
Q ss_pred HHHHHhcCC----C-CCCHHHHHHHHHHhcHHHHHHh--CCCCccchhcCC-CCCCChHHHHHHHHHHHhccCCCEEEEe
Q 001041 476 IKDNIAYGK----D-DATTEEIRVATELANAAKFIDK--LPQGIDTLVGEH-GTQLSGGQKQRIAIARAILKDPRILLLD 547 (1178)
Q Consensus 476 i~~ni~~~~----~-~~~~~~~~~~~~~~~~~~~i~~--~~~g~~t~~~~~-g~~lSgGqkqri~lARal~~~~~illlD 547 (1178)
|+||+.|.. + ..++++..+. +++.++. +++..+|.+|+. ...||||||||++|||||+++|+||+||
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLD 231 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILD 231 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEe
Confidence 999998752 2 1233322211 1223333 333447888754 6789999999999999999999999999
Q ss_pred CCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch-h-hccCEEEEEeCCEEEEecChhHHhc
Q 001041 548 EATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST-V-RNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 548 e~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|||++||+.+...+.+.++++. +++|+|+++|+++. + ..+|+|++|++|++++.|+++++.+
T Consensus 232 EPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 232 EPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 9999999999999999998875 58999999999984 4 5699999999999999999998853
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=314.46 Aligned_cols=203 Identities=29% Similarity=0.395 Sum_probs=160.3
Q ss_pred EEEEeEEEECCCC---C-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC--Ce--ecCCCCH
Q 001041 384 IELRDVYFSYPAR---P-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--GI--NLKEFQL 455 (1178)
Q Consensus 384 i~~~~~~~~y~~~---~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~--g~--~~~~~~~ 455 (1178)
|+++|++++|+.. . ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++...+.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 2469999999999999999999999999999999999999999999998 42 6655554
Q ss_pred HH---H-hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHH
Q 001041 456 QW---I-RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQ 527 (1178)
Q Consensus 456 ~~---~-r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGq 527 (1178)
.. + +++++|++|+|.++. .|++||+.++.. ....++..+ .+.+.++.+ |++.. ....+.+|||||
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G~ 154 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL--NIPERLWHLPPATFSGGE 154 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhhCCcccCCHHH
Confidence 43 3 457999999998775 699999976321 112111111 112233333 33322 244677899999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEE
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVI 593 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l 593 (1178)
|||++||||++++|+++||||||++||+++.+.+.+.++++. +++|+|++||+++.+. .||+|+.+
T Consensus 155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999999999999999999999998865 4789999999999886 59999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=352.26 Aligned_cols=218 Identities=23% Similarity=0.383 Sum_probs=177.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCcEEECCeecCCCCH-HHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQL-QWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~g~~~~~~~~-~~~r~ 460 (1178)
.|+++|+++.|+...+.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+. +..+.
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223469999999999999999999999999999999999998 599999999998865543 34567
Q ss_pred ceEEEcCCC---CCC-cccHHHHHhcCCC-CC------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHH
Q 001041 461 KIGLVSQEP---VLF-TGSIKDNIAYGKD-DA------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQK 528 (1178)
Q Consensus 461 ~i~~v~Q~~---~l~-~~ti~~ni~~~~~-~~------~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqk 528 (1178)
+++|++|+| .++ ..|+.||+.++.. .. +.++ ....+.+.++.+ |++. ........||||||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~k 411 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA-----ELKTILESIQRL--KVKTASPELAIARLSGGNQ 411 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH-----HHHHHHHHHHhc--CccCCCcccccccCCHHHH
Confidence 899999996 355 5699999987531 00 1111 111233445554 4432 34566778999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||++++|++|+++..|++++
T Consensus 412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998764 47899999999998865 99999999999999998876
Q ss_pred H
Q 001041 607 L 607 (1178)
Q Consensus 607 l 607 (1178)
+
T Consensus 492 ~ 492 (506)
T PRK13549 492 L 492 (506)
T ss_pred C
Confidence 5
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=352.96 Aligned_cols=220 Identities=28% Similarity=0.470 Sum_probs=176.2
Q ss_pred cEEEEeEEEECCC--CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC-Cee---cCCCC--
Q 001041 383 DIELRDVYFSYPA--RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-GIN---LKEFQ-- 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~--~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~-g~~---~~~~~-- 454 (1178)
.++++|++++|++ +...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999963 122469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhcceEEEcCCCCCCc-ccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccc-----hhcCCCCCCChH
Q 001041 455 -LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDT-----LVGEHGTQLSGG 526 (1178)
Q Consensus 455 -~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-----~~~~~g~~lSgG 526 (1178)
...+|++++|+||++.+|. .|++||+.++.. ....++.. ..+.+.++.+ |+.. .......+||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~~~~~LSgG 431 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV--GFDEEKAEEILDKYPDELSEG 431 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC--CCCCccchhhhhCChhhCCHH
Confidence 2345678999999998775 699999986321 11111111 1122333333 3322 345667789999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 432 q~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~ 511 (520)
T TIGR03269 432 ERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGD 511 (520)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988753 6899999999999865 99999999999999999
Q ss_pred hhHHhc
Q 001041 604 HSKLVE 609 (1178)
Q Consensus 604 ~~~l~~ 609 (1178)
++++.+
T Consensus 512 ~~~~~~ 517 (520)
T TIGR03269 512 PEEIVE 517 (520)
T ss_pred HHHHHh
Confidence 888754
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=299.97 Aligned_cols=197 Identities=29% Similarity=0.491 Sum_probs=169.2
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----CCHHHHhcceEEEcCCCCCC-cccHHH
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE----FQLQWIRKKIGLVSQEPVLF-TGSIKD 478 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~----~~~~~~r~~i~~v~Q~~~l~-~~ti~~ 478 (1178)
+++|..+.-.++||-|+||||||||+++|.|+..|++|.|.+||.-+.+ +.+.--+++||||+||.-|| .-|||-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5788887768999999999999999999999999999999999986643 33334467899999999999 589999
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1178)
|+.||....+.++...++++-++... +.....+||||+|||+||+|||+.+|++|++|||+|+||-...
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hL-----------L~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK 164 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHL-----------LDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHH-----------HhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchh
Confidence 99999876666667666666555444 4455578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 559 KVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 559 ~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
+.+.-.++.+.+ +--++.|||.++.+.+ ||+|++|++|++...|..++..+.+
T Consensus 165 ~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 165 REILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred hHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 988888877764 3578999999998755 9999999999999999999998763
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=306.43 Aligned_cols=178 Identities=33% Similarity=0.528 Sum_probs=144.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC--CCHHHHhcceEEEcCCC--CCCcc
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRKKIGLVSQEP--VLFTG 474 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~~i~~v~Q~~--~l~~~ 474 (1178)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|++|+| .+|..
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 84 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAA 84 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccc
Confidence 469999999999999999999999999999999999999999999999998852 23445678899999998 47788
Q ss_pred cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 001041 475 SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1178)
Q Consensus 475 ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1178)
|++||+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++||||++++|+++||||||++
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 157 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERR-----VREALTAV--GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAG 157 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 99999987521 1222222111 11222222 344444556678999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHh-cCCeEEEEecCcch
Q 001041 553 LDAESEKVVQEALDRIM-VNRTTVIVAHRLST 583 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~ 583 (1178)
||+.+.+.+.+.++++. +++|+|++||+++.
T Consensus 158 LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 158 LDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999998774 47899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=312.12 Aligned_cols=187 Identities=27% Similarity=0.469 Sum_probs=154.9
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCC---CcccHHHHHhcC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIAYG 483 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l---~~~ti~~ni~~~ 483 (1178)
|++++||+++|+|+||||||||+++|.|+++|++|+|.+||.++. ..+++++|++|+|.+ ++.|+++|+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 346789999999965 457999999875
Q ss_pred CCC-------CC---HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCC
Q 001041 484 KDD-------AT---TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553 (1178)
Q Consensus 484 ~~~-------~~---~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~l 553 (1178)
... .. ++++..+++.. |++........+||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRV-----------GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHh-----------CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 210 11 12233333333 3333344556679999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 554 DAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 554 D~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|+++ +|++++.|+++++..+
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~ 202 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP 202 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh
Confidence 9999999999998875 47899999999998864 9999999 7999999999988653
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=312.37 Aligned_cols=197 Identities=24% Similarity=0.325 Sum_probs=154.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+.++|++..|+. +++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------- 89 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------- 89 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh----------
Confidence 567788888853 4699999999999999999999999999999999999999999999999875311
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 464 LVSQEPVL-FTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 464 ~v~Q~~~l-~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
.+.+.+ .+.|++||+.++... .+.++..+. ..+.++.+ |++........+||||||||++||||++++
T Consensus 90 --~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 160 (224)
T cd03220 90 --GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK-----IDEIIEFS--ELGDFIDLPVKTYSSGMKARLAFAIATALE 160 (224)
T ss_pred --cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 111222 357999999865321 122222111 11122221 344444555578999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 161 p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 161 PDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999998764 3589999999999886 49999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=304.63 Aligned_cols=189 Identities=20% Similarity=0.359 Sum_probs=156.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|++++|+. +.++ ++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999953 3355 599999999999999999999999999999999999999999999876542 34699
Q ss_pred EEcCCCCC-CcccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 464 LVSQEPVL-FTGSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 464 ~v~Q~~~l-~~~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|++|++.+ +..|++||+.++.... ..++++.+++..++ +....+.+.+||||||||++||||++++|
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~~rl~la~al~~~p 142 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKL-----------HDLLDEKCYSLSSGMQKIVAIARLIACQS 142 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHcCC-----------HhhhccChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999854 6789999998754322 23344444444443 33345567889999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHH-hcCCeEEEEecCcchhhccCEEE
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
+++||||||++||+.+.+.+.+.++.. .+++|+|++||+++.++.+|.|.
T Consensus 143 ~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 143 DLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 999999999999999999999998754 35789999999999999999763
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=355.36 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH---
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI--- 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~--- 458 (1178)
.++++|++++|+... .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.+.+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 489999999996422 2469999999999999999999999999999999999999999999999999998886653
Q ss_pred -hcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 459 -RKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 459 -r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
|+.++|++|+|.+|. .|+.||+.++... ...++. .....+.++.+ |++..+.....+||||||||++||
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~-----~~~~~~~l~~l--gl~~~~~~~~~~LS~Gq~qrv~LA 156 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR-----LLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIA 156 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHC--CChhhhcCCcccCCHHHHHHHHHH
Confidence 578999999999985 6999999864211 111111 11223445554 667777777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHh
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
||++++|+++||||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||++++|++|++++.|+.++..
T Consensus 157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 99999999999999999999999999999998875 478999999999999889999999999999999999875
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=362.21 Aligned_cols=220 Identities=19% Similarity=0.345 Sum_probs=183.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.. +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~~-~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSGT-SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECCC-CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 359999999999642 2569999999999999999999999999999999999999999999999999865 45567888
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
||||||++.++. .|++||+.+... ....++..+. ..+.++.+ |++.........||||||||++||||++
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~l--gL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSL--GLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence 999999998874 699999986311 1122222211 11223333 4554556667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+|+|++|||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHH
Confidence 9999999999999999999999999998864 57899999999999875 999999999999999999998654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=345.67 Aligned_cols=216 Identities=23% Similarity=0.332 Sum_probs=173.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEEECCeecCCCCH-HHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQL-QWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~~~~-~~~r~ 460 (1178)
.++++|++++|+...+..+|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999998432124699999999999999999999999999999999999985 89999999999865443 45678
Q ss_pred ceEEEcCCC---CCC-cccHHHHHhcCCCC-C------CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHH
Q 001041 461 KIGLVSQEP---VLF-TGSIKDNIAYGKDD-A------TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQK 528 (1178)
Q Consensus 461 ~i~~v~Q~~---~l~-~~ti~~ni~~~~~~-~------~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqk 528 (1178)
+++|++|++ .++ ..|+++|+.++... . ..++ ....+.+.++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAA-----ELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHH-----HHHHHHHHHHhc--CccCCCccCccccCCHHHH
Confidence 899999996 355 46999999875310 0 1111 111223344444 3432 24555678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|++|||||||++||+.+...+.+.++++. ++.|+|+|||+++.+.. ||++++|++|+++..++.+
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNH 488 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999888764 47899999999999865 9999999999999766543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-31 Score=281.59 Aligned_cols=375 Identities=21% Similarity=0.232 Sum_probs=286.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001041 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQ 846 (1178)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~ 846 (1178)
++++.++..+.+.+........++++..++|.++.++++..|+.-++ +..+++++.++++|+..|. +-...++.+.+
T Consensus 54 f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerie--r~~~~rlla~L~~Dvr~IS-f~~s~lp~~~q 130 (546)
T COG4615 54 FLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIE--RLGSARLLAGLTSDVRNIS-FAFSRLPELVQ 130 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH--Hhcccchhhhhccccccee-ehHhhhHHHHH
Confidence 34444444555666777888899999999999999999999999999 5889999999999999998 55566788999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHH--
Q 001041 847 NISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKV-- 924 (1178)
Q Consensus 847 ~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~-- 924 (1178)
+...+++++.++++.|+++.+++++++.+.++..++.+.+..+..+..++...++.+..+..++|-+..+....-.+.
T Consensus 131 a~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h 210 (546)
T COG4615 131 AIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVH 210 (546)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHH
Confidence 999999999999999999999999999999999999999888889999999999999999999999998876432221
Q ss_pred HHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchh
Q 001041 925 MQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSS 1004 (1178)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~ 1004 (1178)
.+.|....+...+...+..........+.+++....+.+++|+.... +.-+.....++.+.+.++-.|+.+.....+
T Consensus 211 ~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgilP 287 (546)
T COG4615 211 NNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGILP 287 (546)
T ss_pred hhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhhh
Confidence 12222222222221111111111223334444444555555554333 233334445566666778889999999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCH
Q 001041 1005 DSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGK 1084 (1178)
Q Consensus 1005 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGK 1084 (1178)
.+..+.++.+++.++-..|+..+-. .+...+..+ .||++||.|+|++.. --+..||++|+.||.|=|+|.+||||
T Consensus 288 ~l~~AqvA~~kiakle~~~~~a~~~--~~q~~p~~~-~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~NGsGK 362 (546)
T COG4615 288 TLLTAQVAFNKIAKLELAPYKADFP--RPQAFPDWK-TLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGNGSGK 362 (546)
T ss_pred HHHHHHHHHHHHHHhhcCCccccCC--CCCcCCccc-ceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCCCCcH
Confidence 9999999999999886544322111 111122233 599999999997432 45889999999999999999999999
Q ss_pred HHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHH
Q 001041 1085 STVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158 (1178)
Q Consensus 1085 STL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~ 1158 (1178)
||+++||.|+|.|++|+|++||.+++.=++++.|+-+|-|+-|-+||+.++ |+...++.+.|..-++.
T Consensus 363 ST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~Lqr 430 (546)
T COG4615 363 STLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQR 430 (546)
T ss_pred HHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999764 54433777766554443
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=322.91 Aligned_cols=190 Identities=33% Similarity=0.558 Sum_probs=156.8
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHH
Q 001041 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIR 493 (1178)
Q Consensus 417 ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~ 493 (1178)
|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++|++|++.+|. .|++||+.|+... .+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999977664 3568999999999986 5999999986421 1222211
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--C
Q 001041 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--N 571 (1178)
Q Consensus 494 ~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~ 571 (1178)
. .+.+.++.+ |++........+||||||||++|||||+++|+++||||||++||+.+...+.+.++++.+ +
T Consensus 79 ~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g 151 (325)
T TIGR01187 79 P-----RVLEALRLV--QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG 151 (325)
T ss_pred H-----HHHHHHHHc--CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence 1 112233333 455556666788999999999999999999999999999999999999999999988753 7
Q ss_pred CeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 572 RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 572 ~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+|+|+|||+++.+.. ||+|++|++|++++.|+++++...+...+
T Consensus 152 ~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 152 ITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 899999999998764 99999999999999999999987654433
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=343.82 Aligned_cols=210 Identities=20% Similarity=0.332 Sum_probs=172.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.++++|+++.|. .+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 599999998762 38999999999999999999999999999999999999999999999998866543 456778
Q ss_pred eEEEcCCC---CCCc-ccHHHHHhcCCCCC-----------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCCh
Q 001041 462 IGLVSQEP---VLFT-GSIKDNIAYGKDDA-----------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSG 525 (1178)
Q Consensus 462 i~~v~Q~~---~l~~-~ti~~ni~~~~~~~-----------~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSg 525 (1178)
++|+||++ .++. .|++||+.++.... ...+. ...+.+.++.+ |+. .........|||
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSg 412 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE-----QRTAENQRELL--ALKCHSVNQNITELSG 412 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHH-----HHHHHHHHHhc--CCCCCCccCccccCCh
Confidence 99999984 4664 69999998753210 11111 11223444444 453 345666678999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
|||||++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.++
T Consensus 413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~ 492 (510)
T PRK09700 413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILT 492 (510)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998764 4789999999999876 499999999999998876
Q ss_pred h
Q 001041 604 H 604 (1178)
Q Consensus 604 ~ 604 (1178)
.
T Consensus 493 ~ 493 (510)
T PRK09700 493 N 493 (510)
T ss_pred C
Confidence 5
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=342.71 Aligned_cols=210 Identities=21% Similarity=0.349 Sum_probs=173.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 488999873 37999999999999999999999999999999999999999999999999877664 346778
Q ss_pred eEEEcCCC---CCC-cccHHHHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 001041 462 IGLVSQEP---VLF-TGSIKDNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1178)
Q Consensus 462 i~~v~Q~~---~l~-~~ti~~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqk 528 (1178)
++|+||+| .++ ..|++||+.++... .+.++. ...+.+.++.+ |+. .........||||||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGek 401 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQ 401 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc--CCCCCCccCchhhCCHHHH
Confidence 99999997 344 57999999874210 011111 11223444444 442 345667788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..|++++
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999998875 47899999999998865 99999999999999998776
Q ss_pred H
Q 001041 607 L 607 (1178)
Q Consensus 607 l 607 (1178)
+
T Consensus 482 ~ 482 (501)
T PRK10762 482 A 482 (501)
T ss_pred C
Confidence 4
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=306.11 Aligned_cols=193 Identities=24% Similarity=0.408 Sum_probs=155.8
Q ss_pred EECCCCCCCccccceeEEEe-----CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 391 FSYPARPNEQIFSGFSISIS-----SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 391 ~~y~~~~~~~~l~~i~l~i~-----~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
|+|+.. .+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. +|+|+
T Consensus 1 ~~y~~~--~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCccc--ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 568643 358889999887 69999999999999999999999999999999999984 69999
Q ss_pred cCCCC-CCcccHHHHHhcCCCCC-C-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 466 SQEPV-LFTGSIKDNIAYGKDDA-T-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 466 ~Q~~~-l~~~ti~~ni~~~~~~~-~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
||++. .+..|++||+.+..... . .+...+++ +.+ |++........+||||||||++|||||+++|+
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l---------~~l--~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~ 135 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIA---------KPL--QIEQILDREVPELSGGELQRVAIAACLSKDAD 135 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhccccHHHHHHHH---------HHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99996 46899999997543211 1 11122222 222 45545566677899999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEE--EecChhHHh
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKGTHSKLV 608 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g~~~~l~ 608 (1178)
++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|+++..+ ..++|.++.
T Consensus 136 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 136 IYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 9999999999999999999999988753 7899999999999875 9999999765443 455666554
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=341.12 Aligned_cols=212 Identities=24% Similarity=0.345 Sum_probs=173.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~ 461 (1178)
.++++|+++. .+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... +..|..
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4889999732 38999999999999999999999999999999999999999999999998865433 455678
Q ss_pred eEEEcCCCC---CC-cccHHHHHhcCCCCC--------CHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 001041 462 IGLVSQEPV---LF-TGSIKDNIAYGKDDA--------TTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1178)
Q Consensus 462 i~~v~Q~~~---l~-~~ti~~ni~~~~~~~--------~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqk 528 (1178)
++|+||+|. +| ..|+.||+.++.... ...+. ...+.+.++.+ |++ ........+||||||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 402 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL--NIKTPSREQLIMNLSGGNQ 402 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc--CcccCCccCccccCCHHHH
Confidence 999999973 55 589999998753211 11111 11123344444 442 334566678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhH
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~ 606 (1178)
||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+.. ||++++|++|++++.|++++
T Consensus 403 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~ 482 (501)
T PRK11288 403 QKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482 (501)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998865 37899999999999864 99999999999999998876
Q ss_pred Hh
Q 001041 607 LV 608 (1178)
Q Consensus 607 l~ 608 (1178)
..
T Consensus 483 ~~ 484 (501)
T PRK11288 483 AT 484 (501)
T ss_pred CC
Confidence 54
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=278.95 Aligned_cols=143 Identities=38% Similarity=0.598 Sum_probs=133.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++|+++.|++ .++++++||++++||+++|+|+||||||||+++|.|+++|++|+|.++|. ..++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 468999999964 36999999999999999999999999999999999999999999999984 4799
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
|++| ||+||+||++||||++++|++
T Consensus 67 ~~~~-------------------------------------------------------lS~G~~~rv~laral~~~p~i 91 (144)
T cd03221 67 YFEQ-------------------------------------------------------LSGGEKMRLALAKLLLENPNL 91 (144)
T ss_pred EEcc-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 9999 999999999999999999999
Q ss_pred EEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 544 LLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 544 lllDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
+||||||++||+.+...+.+.++++ ++|++++||+++.+.. ||++++|++|+
T Consensus 92 lllDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 92 LLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999876 4799999999999865 89999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=371.90 Aligned_cols=213 Identities=22% Similarity=0.423 Sum_probs=178.8
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC---CCCCcEEECCeecCCCCHHHH
Q 001041 383 DIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD---PQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~---~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
.++++|++++|+.++ ++++|+|+|+++++||+++|+||||||||||+++|.|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 378999999996322 3579999999999999999999999999999999999997 68899999999874 246
Q ss_pred hcceEEEcCCCC-CCcccHHHHHhcCC----C-CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 459 RKKIGLVSQEPV-LFTGSIKDNIAYGK----D-DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 459 r~~i~~v~Q~~~-l~~~ti~~ni~~~~----~-~~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
|+.++||+|++. ++..|||||+.|+. | ..++++ +.++++..+ +.+-.|+.+|+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~-------L~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLE-------MESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhCCCeeCCCCCCCCHHHh
Confidence 889999999875 55789999999752 2 123322 233333333 333468889988889999999
Q ss_pred HHHHHHHHhccCCC-EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchh--hccCEEEEEeCC-EEEEecC
Q 001041 529 QRIAIARAILKDPR-ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV--RNADMIAVIHRG-KIVEKGT 603 (1178)
Q Consensus 529 qri~lARal~~~~~-illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~--~~~d~i~~l~~G-~i~~~g~ 603 (1178)
||++|||||+.+|+ ||+||||||+||+.+...+.+.++++. +++|+|+++|+++.. ..+|++++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999998874 579999999999963 579999999987 9999999
Q ss_pred hhH
Q 001041 604 HSK 606 (1178)
Q Consensus 604 ~~~ 606 (1178)
+.+
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 754
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=278.50 Aligned_cols=202 Identities=28% Similarity=0.477 Sum_probs=172.5
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCC--CC-cc
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LF-TG 474 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~--l~-~~ 474 (1178)
++++|+++|++|+.|+++-|+|.+|||||||+++|.|.+.|++|+|.|||+|+...+.+..-..++-|+|||- .| +-
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4689999999999999999999999999999999999999999999999999999999988888999999995 33 67
Q ss_pred cHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 001041 475 SIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1178)
Q Consensus 475 ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1178)
||.||+.+.... .+.. ...-+.....+.+..+|.|++..++.+..-|||||||-++|+.|.++.|+||+|||-
T Consensus 98 TieENl~la~~Rg~~rgl~~~--ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSA--LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cHHHHHHHHHhcCcccccchh--hhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 999999875321 1111 111122333456888999999999999889999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchh-hccCEEEEEeCCEEEEe
Q 001041 550 TSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~-~~~d~i~~l~~G~i~~~ 601 (1178)
|+||||.+...+.+.-.+.- .+-|.++|||+++.. ...+|.++|++|+|+-.
T Consensus 176 TAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 176 TAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 99999999998877665543 245999999999875 56799999999999953
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=338.04 Aligned_cols=202 Identities=21% Similarity=0.363 Sum_probs=168.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +.++
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------NANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------ceEE
Confidence 5999999999963 3599999999999999999999999999999999999999999999988 3479
Q ss_pred EEEcCCCC--CC-cccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEPV--LF-TGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~~--l~-~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|++. ++ ..|+++|+.+.. +...++++...++..++. .........+||||||||++||||++
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgGq~qrv~la~al~ 454 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFS----------QDDIKKSVKVLSGGEKGRMLFGKLMM 454 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCC----------hhHhcCcccccCHHHHHHHHHHHHHh
Confidence 99999984 44 369999997532 112233344444333221 12345667889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 610 (1178)
.+|++|||||||++||+.+...+.+.++++ +.|+|+|||+++.+.. ||+|++|++|+++ +.|+++++++.
T Consensus 455 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 455 QKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 999999999999999999999999999876 4699999999999875 9999999999998 78998887654
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=305.24 Aligned_cols=201 Identities=22% Similarity=0.362 Sum_probs=158.1
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE-----------ECCeecCCCCH
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-----------IDGINLKEFQL 455 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-----------i~g~~~~~~~~ 455 (1178)
.|++++|+. ..++|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.+...
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 478899963 2359999995 999999999999999999999999999999999996 78888766543
Q ss_pred HHHhc--ceEEEcCCCCCCcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 456 QWIRK--KIGLVSQEPVLFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 456 ~~~r~--~i~~v~Q~~~l~~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
...|. .++|++|++.++..++.+|+.+...... +++.. +.++.+ |++........+||||||||++
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~---------~~l~~~--gl~~~~~~~~~~LS~G~~qrv~ 149 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLD---------ELVDQL--ELRHVLDRNIDQLSGGELQRVA 149 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhchhHHHHHHH---------HHHHHc--CCchhhcCChhhCCHHHHHHHH
Confidence 33332 4789999887766566666553211111 12222 233333 5555667777899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
||||++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||+|++|+ |++.+.|
T Consensus 150 laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 150 IAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999999999987754 6899999999999875 99999995 6666543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=335.75 Aligned_cols=211 Identities=18% Similarity=0.350 Sum_probs=172.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-Hhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~ 461 (1178)
.++++|++. .+|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++...+... .|.+
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 488999972 1699999999999999999999999999999999999999999999999988776554 4568
Q ss_pred eEEEcCCCC---CCc-ccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHH
Q 001041 462 IGLVSQEPV---LFT-GSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 462 i~~v~Q~~~---l~~-~ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri 531 (1178)
++|+||++. +|. .|+.+|+.... +. ....+.+ ..+.+.++.+ |+. .........||||||||+
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl 412 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN-----AVLERYRRAL--NIKFNHAEQAARTLSGGNQQKV 412 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH-----HHHHHHHHHc--CCCCCCccCccccCCcHHHHHH
Confidence 999999862 554 59999986321 10 0111111 1223444544 454 345666788999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 491 (510)
T PRK15439 413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAIN 491 (510)
T ss_pred HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCC
Confidence 99999999999999999999999999999999998864 47899999999999865 9999999999999999887664
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=293.84 Aligned_cols=185 Identities=16% Similarity=0.233 Sum_probs=149.4
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE-ECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL-IDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKD 478 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~-i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ 478 (1178)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|. .|++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777432 2345677776 49999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 001041 479 NIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 479 ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1178)
|+.+... ..+.++....+ .+ ...++...++ ....||||||||++||||++.+|+++||||||+++|+.
T Consensus 69 nl~~~~~~~~~~~~~~~~~~-----~~-~~~l~~~~~~----~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~ 138 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFC-----YQ-LTQLEQCYTD----RVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNA 138 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHH-----HH-HhChhHHhhc----hHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHH
Confidence 9987432 12233322211 11 1223333333 34569999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 557 ~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+.++..
T Consensus 139 ~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 191 (213)
T PRK15177 139 TQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQAT 191 (213)
T ss_pred HHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHH
Confidence 99999988866566789999999999986 59999999999999999888764
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=265.37 Aligned_cols=219 Identities=25% Similarity=0.452 Sum_probs=171.3
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH
Q 001041 384 IELRDVYFSYPAR------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 384 i~~~~~~~~y~~~------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
++++|++.++..+ ....+.+.+||++++|+.+||+|.+|||||||.++|.|.++|++|+|.+||+++.--+-..
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4556665444222 1234789999999999999999999999999999999999999999999999887666666
Q ss_pred HhcceEEEcCCCC-CCc----------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 458 IRKKIGLVSQEPV-LFT----------GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~-l~~----------~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
..++|-+++|||- -|| +.++-|-.+ .+....+++.+.++.+++ +|+--+. ....||.|
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~-~~~~R~~~i~~TL~~VGL------~Pdhan~----~~~~la~~ 153 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDL-EPEQRRKQIFETLRMVGL------LPDHANY----YPHMLAPG 153 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccC-ChHHHHHHHHHHHHHhcc------Ccccccc----chhhcCch
Confidence 6678999999993 232 222222221 122334555566666554 4432222 34679999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
||||+||||||.-+|+|+|-||+.++||.....++.+...++. .|-.-|.|+.++..+++ +|+|+||++|+++|.|+
T Consensus 154 QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~ 233 (267)
T COG4167 154 QKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGS 233 (267)
T ss_pred hHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCC
Confidence 9999999999999999999999999999999888887776553 36788999999999998 99999999999999999
Q ss_pred hhHHhcCCCc
Q 001041 604 HSKLVEDPEG 613 (1178)
Q Consensus 604 ~~~l~~~~~~ 613 (1178)
+.++++.+..
T Consensus 234 t~~v~a~P~~ 243 (267)
T COG4167 234 TADVLASPLH 243 (267)
T ss_pred hhhhhcCCcc
Confidence 9999987643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.4e-32 Score=327.83 Aligned_cols=211 Identities=19% Similarity=0.336 Sum_probs=168.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH-HHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 461 (1178)
.|+++|+++.| +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. .++..
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 58999999874 2489999999999999999999999999999999999999999999999999876654 45677
Q ss_pred eEEEcCCCC---CCc-ccHHHH-----HhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHH
Q 001041 462 IGLVSQEPV---LFT-GSIKDN-----IAYGKDD---ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQK 528 (1178)
Q Consensus 462 i~~v~Q~~~---l~~-~ti~~n-----i~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqk 528 (1178)
++|+||++. +|. .|+.+| +.+.... .+..+.. ....+.++.+ |+. ........+||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 453 577666 3321111 1111111 1122344444 332 234666788999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChh
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~ 605 (1178)
||++||||++.+|+||||||||++||+.+...+.+.++++. +++|+|+|||+++.+.. ||++++|++|+++..++.+
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~ 476 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTK 476 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccc
Confidence 99999999999999999999999999999999999997764 47899999999998864 9999999999999877654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3e-32 Score=330.29 Aligned_cols=208 Identities=27% Similarity=0.370 Sum_probs=164.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEEECCeecCC-CCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKE-FQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~-~~~~~~r~ 460 (1178)
.++++|+++.|++ ..+|+|+||++++||+++|+||||||||||+++|+|+.++ ++|+|.++|.++.. ......|.
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 5999999999963 3599999999999999999999999999999999998876 69999999987632 23344677
Q ss_pred ceEEEcCCCCCC---cccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHH
Q 001041 461 KIGLVSQEPVLF---TGSIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 461 ~i~~v~Q~~~l~---~~ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkq 529 (1178)
+++|++|++.++ ..++++++.++... ...+. . ..+.+.++.+ |+.. .......+|||||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~q 408 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQ-Q-----KLAQQWLDIL--GIDKRTADAPFHSLSWGQQR 408 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHH-H-----HHHHHHHHHc--CCchhhccCchhhCCHHHHH
Confidence 899999998654 24777777543110 11111 1 0112233333 4444 445566789999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-C-CeEEEEecCcchhhc--cCEEEEEeCCEEEEe
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-N-RTTVIVAHRLSTVRN--ADMIAVIHRGKIVEK 601 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~-~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~ 601 (1178)
|++||||++.+|++|||||||++||+++.+.+.+.|+++.+ + .|+|+|||+++.+.. ||++++|++|+|++.
T Consensus 409 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 409 LALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 99999999999999999999999999999999999988753 3 469999999999864 799999999999864
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=331.68 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=161.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|+++.|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+
T Consensus 507 ~~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ 573 (718)
T PLN03073 507 PIISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVR 573 (718)
T ss_pred ceEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------cee
Confidence 35999999999963 23599999999999999999999999999999999999999999999876 347
Q ss_pred eEEEcCCCCCCcccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
|+|++|++. ...++.+|..+. .+...++++..+++..++.+ .........||||||||++||||+
T Consensus 574 igyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~----------~~~~~~~~~LSgGqkqRvaLAraL 642 (718)
T PLN03073 574 MAVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTG----------NLALQPMYTLSGGQKSRVAFAKIT 642 (718)
T ss_pred EEEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCCh----------HHhcCCccccCHHHHHHHHHHHHH
Confidence 999999873 233455553211 12234455555554444321 123445678999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhHH
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKL 607 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l 607 (1178)
+.+|++|||||||++||+.+...+.+.+... + .|+|+|||+++.+.. ||+|++|++|+++ ..|+++++
T Consensus 643 ~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 643 FKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999988888888765 3 599999999999875 9999999999998 67877664
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.7e-32 Score=277.54 Aligned_cols=151 Identities=27% Similarity=0.356 Sum_probs=133.8
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEc
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS 466 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~ 466 (1178)
.|++++|++ .+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 588999963 468888 4999999999999999999999999999999999999999995 489999
Q ss_pred CCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 001041 467 QEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546 (1178)
Q Consensus 467 Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illl 546 (1178)
|++. ||||||||++||||++.+|++++|
T Consensus 68 q~~~----------------------------------------------------LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 68 QYID----------------------------------------------------LSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ccCC----------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9763 999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHh-cC-CeEEEEecCcchhhc-cCEEEEEeCCEEEEe--cChh
Q 001041 547 DEATSALDAESEKVVQEALDRIM-VN-RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK--GTHS 605 (1178)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~-~~-~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~--g~~~ 605 (1178)
||||++||+++.+.+.+.+++.. ++ +|+|++||+++.+.. ||++++|+++-.+.. |.|.
T Consensus 96 DEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCc
Confidence 99999999999999999998865 33 899999999999875 999999998755532 5544
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=251.91 Aligned_cols=195 Identities=28% Similarity=0.431 Sum_probs=157.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~~~~~r 459 (1178)
.+.++||+.+-++ .-.|.|+||+|.+||++-+.||||||||||+.-+.|.+.+. +|++.+|++++..++.+ +
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 4678999988764 45899999999999999999999999999999999999874 79999999999988876 4
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCCCCHH-----HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDDATTE-----EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~-----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+++|+.+||||+|. -+|-+||.|..|..-.. ....+++.. |++-.-.....+||||||.||+|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~-----------gL~g~f~~dP~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERS-----------GLDGAFHQDPATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHh-----------ccchhhhcChhhcCcchHHHHHH
Confidence 68999999999995 79999999987643222 222333333 44444455567899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHH--hcCCeEEEEecCcchhhccCEEEEE
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~--~~~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
-|+|+..|+.++||||+|.||..-..++.+-+-.. ..+--+++|||+.+-++...||+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999998776666554322 2367889999999988755555544
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-32 Score=275.45 Aligned_cols=214 Identities=24% Similarity=0.460 Sum_probs=183.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.+++++|+.+|+ +..+++|+||.++||++.+++|+||+||||.+++|+|+++|++|+|.++|.+++.. .+.+|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhc
Confidence 478999999996 35699999999999999999999999999999999999999999999999887653 45689
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
||.|.+--|+ ..||.|-|.|... .....++.. .+..|++++. +--....+...||-|.+|+|-+--|+++
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~~--i~~~~~~kIk~LSKGnqQKIQfisaviH 147 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERLE--IVGKKTKKIKELSKGNQQKIQFISAVIH 147 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhcc--ccccccchHHHhhhhhhHHHHHHHHHhc
Confidence 9999999988 5899999998432 233444433 2345666653 2233445667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|+++|||||+|+|||-+.+.+.+.+.++. +|.|+|+.|||++.+.. ||+++.|++|+.|-.|+.+++.+.
T Consensus 148 ePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 148 EPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRS 220 (300)
T ss_pred CCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHh
Confidence 999999999999999999999999998775 58999999999999976 999999999999999999988764
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-31 Score=330.92 Aligned_cols=199 Identities=27% Similarity=0.405 Sum_probs=162.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999741 269
Q ss_pred EEEcCCC--CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEP--VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~--~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+|++|++ .+. ..|+.+++....+....+++...++.. |+. .........||||||||++||||++
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-----------~l~~~~~~~~~~~LSgGekqRl~La~~l~ 446 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGF-----------GFQGDKVTEETRRFSGGEKARLVLALIVW 446 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHc-----------CCChhHhcCchhhCCHHHHHHHHHHHHHh
Confidence 9999985 343 347888874212222223333333332 332 2344556789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhHHh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLV 608 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 608 (1178)
.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+++++.. ||+|++|++|+++ ..|+++++.
T Consensus 447 ~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999886 3599999999999875 9999999999997 788887763
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=271.88 Aligned_cols=154 Identities=41% Similarity=0.689 Sum_probs=143.3
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
++|+++.|+. .++++++||++++|++++|+|+||||||||+++|.|+++|.+|+|+++|.++........+..++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999964 3699999999999999999999999999999999999999999999999998887777778899999
Q ss_pred cCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 001041 466 SQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1178)
Q Consensus 466 ~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1178)
+| ||||||||++||||++.+|++++
T Consensus 79 ~q-------------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~i 103 (157)
T cd00267 79 PQ-------------------------------------------------------LSGGQRQRVALARALLLNPDLLL 103 (157)
T ss_pred ee-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEE
Confidence 99 99999999999999999999999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
|||||++||+++...+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 104 lDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 104 LDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999987654 4899999999999987 69999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=326.53 Aligned_cols=202 Identities=24% Similarity=0.380 Sum_probs=164.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + .+
T Consensus 323 ~~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~ 388 (556)
T PRK11819 323 KVIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VK 388 (556)
T ss_pred eEEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eE
Confidence 35999999999963 3699999999999999999999999999999999999999999999954 1 16
Q ss_pred eEEEcCCC-CCC-cccHHHHHhcCCCCC----CHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEP-VLF-TGSIKDNIAYGKDDA----TTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~-~l~-~~ti~~ni~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lA 534 (1178)
|+|+||++ .++ ..|++||+.++.... .+.+.. +.+..+ |+.. .......+||||||||++||
T Consensus 389 i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 389 LAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR---------AYVGRF--NFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred EEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH---------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHH
Confidence 99999997 555 469999998754211 111111 123333 3432 24556678999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeC-CEEE-EecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIV-EKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~~~ 610 (1178)
||++.+|++|||||||++||+.+...+.+.|.++ + .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.++
T Consensus 458 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 458 KTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 9999999999999999999999999999999886 3 489999999998865 999999986 7887 47777776543
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=271.81 Aligned_cols=211 Identities=28% Similarity=0.445 Sum_probs=174.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRK 460 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~ 460 (1178)
.-|+++||++.|. ++++|+|||++|++||..+|+||||||||||++++.|+++|++|.+.+-|+.....+. .++|+
T Consensus 30 ~li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 30 PLIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred ceEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 3599999999996 4579999999999999999999999999999999999999999999999999988887 89999
Q ss_pred ceEEEcCCCC---CCcccHHHHHhcCC------C--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 461 KIGLVSQEPV---LFTGSIKDNIAYGK------D--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 461 ~i~~v~Q~~~---l~~~ti~~ni~~~~------~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
+||+|+-.-. .-+.+++|-++=|. . .+++++..++-. .++.+ |.....++.-..||-||||
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~------lle~~--g~~~la~r~~~~LS~Ge~r 178 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW------LLELL--GAKHLADRPFGSLSQGEQR 178 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHH------HHHHc--chhhhccCchhhcCHhHHH
Confidence 9999985432 22567787776442 1 344444333222 12222 5555566667889999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc---CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
|+-||||++.+|++||||||+++||....+.+.+.+.++.. ..|+|+|||+.+.+.. .++++.+++|+++.+|.
T Consensus 179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999988888887753 4689999999998865 69999999999998763
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=325.60 Aligned_cols=199 Identities=24% Similarity=0.372 Sum_probs=163.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ + .+|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 5999999999963 3699999999999999999999999999999999999999999999954 1 169
Q ss_pred EEEcCCC-CCC-cccHHHHHhcCCCCC--C--HHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEP-VLF-TGSIKDNIAYGKDDA--T--TEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~-~l~-~~ti~~ni~~~~~~~--~--~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lAR 535 (1178)
+|++|++ .++ ..|++||+.++.... . +.+.. +.+..+ |+.. .......+||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR---------AYVGRF--NFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH---------HHHHhC--CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 9999997 355 469999999864311 1 11111 233333 4432 245566789999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeC-CEEE-EecChhHHh
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHR-GKIV-EKGTHSKLV 608 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~-G~i~-~~g~~~~l~ 608 (1178)
|++.+|++|||||||++||+.+...+.+.|+++ . .|+|+|||+++.+.. ||+|++|++ |++. ..|+++++.
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~ 530 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-A-GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYE 530 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC-C-CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHH
Confidence 999999999999999999999999999999886 3 489999999999875 999999996 5876 457776554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=289.37 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=142.8
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE--CCeecCCCCHHHHh
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI--DGINLKEFQLQWIR 459 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i--~g~~~~~~~~~~~r 459 (1178)
..|.++|++++|++ .++++|..|++.+|++++|+|++||||||+|++|.|--.|..-++-+ -..++..-....++
T Consensus 74 ~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~ 150 (614)
T KOG0927|consen 74 RDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQ 150 (614)
T ss_pred ccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHH
Confidence 35899999999964 46999999999999999999999999999999999876665433321 11111111111111
Q ss_pred cceEEEcCCCCCCcccHH-------HHHhcCCCCCCHH---HHHHHHHHh-------cHHHHHHhCCCCccchhcCCCCC
Q 001041 460 KKIGLVSQEPVLFTGSIK-------DNIAYGKDDATTE---EIRVATELA-------NAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~-------~ni~~~~~~~~~~---~~~~~~~~~-------~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
.-+ .+..+.+ |++.-..++...+ .++.-+... .+...+..+- -+.......-.+
T Consensus 151 ~v~--------~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glg-f~~~m~~k~~~~ 221 (614)
T KOG0927|consen 151 AVV--------METDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLG-FLSEMQDKKVKD 221 (614)
T ss_pred HHh--------hhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcC-CCHhHHHHHhhc
Confidence 000 0111111 1111110110101 111111100 1111111110 122344556678
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCE-EEE
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGK-IVE 600 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~-i~~ 600 (1178)
||||||-|++|||||+.+|++|||||||++||.++..++.+.+.+.-.. ++++++|.-+++.. |.+|+.|++++ +.+
T Consensus 222 ~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 222 LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeee
Confidence 9999999999999999999999999999999999999999999876322 89999999999986 99999999999 668
Q ss_pred ecChhHHhc
Q 001041 601 KGTHSKLVE 609 (1178)
Q Consensus 601 ~g~~~~l~~ 609 (1178)
.|+++.++.
T Consensus 301 ~Gnydqy~~ 309 (614)
T KOG0927|consen 301 EGNYDQYVK 309 (614)
T ss_pred cCCHHHHhh
Confidence 888887754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=271.34 Aligned_cols=154 Identities=24% Similarity=0.431 Sum_probs=128.3
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
.++|+|+||++++|++++|+||||||||||++++++ .+|++.++|.. ... .+.+++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~-~~~----~~~~~~~~~q----------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFL-PKF----SRNKLIFIDQ----------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCcc-ccc----ccccEEEEhH-----------
Confidence 568999999999999999999999999999999963 68999998752 111 1345888887
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHHHHhccC--CCEEEEeCCCCCCCH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKD--PRILLLDEATSALDA 555 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lARal~~~--~~illlDe~ts~lD~ 555 (1178)
. +.++.+ |+.. ...+...+||||||||++||||++++ |+++||||||++||+
T Consensus 68 --------------~---------~~l~~~--~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~ 122 (176)
T cd03238 68 --------------L---------QFLIDV--GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ 122 (176)
T ss_pred --------------H---------HHHHHc--CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH
Confidence 1 123333 3332 25667789999999999999999999 999999999999999
Q ss_pred HhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 556 ESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
++.+.+.+.++++. .++|+|+|||+++.+..||++++|++|+
T Consensus 123 ~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 123 QDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999999998865 4799999999999988899999996643
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-31 Score=328.16 Aligned_cols=202 Identities=26% Similarity=0.421 Sum_probs=161.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 46999999999999999999999999999999999999999999998 4321 69
Q ss_pred EEEcCCC-CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEP-VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~-~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|++|++ .++ +.|+.||+.++.+......... .+.+.+..+ |+. .........||||||||++||||++.
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~~ 457 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPR-----HVLGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFLK 457 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHH-----HHHHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHhc
Confidence 9999986 355 4599999987543211000000 112223332 232 22344556899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEe-CCEEEE-ecChhHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIH-RGKIVE-KGTHSKL 607 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~-~G~i~~-~g~~~~l 607 (1178)
+|++|||||||++||+.+...+.+.++++ +.|+|+|||+.+++.. ||+|++|+ +|++.+ .|+|++.
T Consensus 458 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y 526 (635)
T PRK11147 458 PSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDA 526 (635)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHH
Confidence 99999999999999999999999999875 4699999999999865 99999998 899985 5666655
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-31 Score=259.76 Aligned_cols=222 Identities=27% Similarity=0.488 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC-eecCCCCHHHH-hc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-INLKEFQLQWI-RK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g-~~~~~~~~~~~-r~ 460 (1178)
.++++|++.++++ -.+|+++||++.+||.-+|+||||+||||++-.|.|-.+|+.|+++++| .|+..++.+.+ |.
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4788999999963 4699999999999999999999999999999999999999999999999 99999998876 56
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHH-------HHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 461 KIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRV-------ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
.|+-=+|.|..| +-||+||+....... ..+|. ..+..++++.+... |+..........||-||||++-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~--k~v~a~L~~r~~~~e~~ride~La~i--gL~~~~~~~A~~LSHGqKQwLE 157 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRD--KSVFASLFARLRAEERRRIDELLATI--GLGDERDRLAALLSHGQKQWLE 157 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCC--cchHHHhhhhcChhHHHHHHHHHHHc--ccchhhhhhhhhhccchhhhhh
Confidence 799999999998 579999998753211 11111 11111222222222 5555556666789999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|+.-+.++|++|+||||++++-.+.....-+.++.+...+++++|.|++.+++. ||+|-||..|.+...|+.+++.+++
T Consensus 158 IGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 158 IGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred hheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCc
Confidence 999999999999999999999554444566677777788999999999999986 9999999999999999999987653
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=320.76 Aligned_cols=192 Identities=27% Similarity=0.371 Sum_probs=160.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|.|+++|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999953 25999999999999999999999999999999999999999999886 169
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|+||++.+ ++.|++||+.++..... ..... +.++.+ |++........+||||||||++|||||+++
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~---------~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~ 471 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKS---------EIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRD 471 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHH---------HHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999864 57899999987532222 12222 233333 444445666778999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++ ++...|+
T Consensus 472 p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999999999999988753 6899999999998865 999999964 8877776
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=343.95 Aligned_cols=215 Identities=24% Similarity=0.394 Sum_probs=174.8
Q ss_pred ccEEEEeEEEECCCC----------CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCee
Q 001041 382 GDIELRDVYFSYPAR----------PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGIN 449 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~----------~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~ 449 (1178)
..+.++||++..+.+ ....+|+|+|++++||++++|+||||||||||+++|.|..++ .+|+|.++|.+
T Consensus 866 ~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 866 LAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP 945 (1470)
T ss_pred ceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc
Confidence 368999999998532 123699999999999999999999999999999999998763 68999999987
Q ss_pred cCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCC----C-CCCHH----HHHHHHHHhcHHHHHHhCCCCccchhcCC
Q 001041 450 LKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGK----D-DATTE----EIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1178)
Q Consensus 450 ~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~----~-~~~~~----~~~~~~~~~~~~~~i~~~~~g~~t~~~~~ 519 (1178)
.. ....|+.++||+|++.++ ..||+|||.|+. | ..+.+ .+.++++..++.+ -.++.+|..
T Consensus 946 ~~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~-------~~~~~vg~~ 1015 (1470)
T PLN03140 946 KK---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN-------LKDAIVGLP 1015 (1470)
T ss_pred CC---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh-------HhCCccCCC
Confidence 54 244667899999998766 579999998742 2 12222 2334444444332 236777755
Q ss_pred C-CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch--hhccCEEEEEeC
Q 001041 520 G-TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHR 595 (1178)
Q Consensus 520 g-~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~ 595 (1178)
+ ..||||||||++|||||+.+|+||+||||||+||+.+...+.+.++++. +++|+|+++|+++. ...+|++++|++
T Consensus 1016 ~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~ 1095 (1470)
T PLN03140 1016 GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKR 1095 (1470)
T ss_pred CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcC
Confidence 4 5799999999999999999999999999999999999999999998875 47899999999984 467999999996
Q ss_pred -CEEEEecChhH
Q 001041 596 -GKIVEKGTHSK 606 (1178)
Q Consensus 596 -G~i~~~g~~~~ 606 (1178)
|++++.|+..+
T Consensus 1096 gG~~v~~G~~~~ 1107 (1470)
T PLN03140 1096 GGQVIYSGPLGR 1107 (1470)
T ss_pred CCEEEEECCccc
Confidence 89999998754
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=301.86 Aligned_cols=207 Identities=24% Similarity=0.371 Sum_probs=165.8
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cc
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TG 474 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~---~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ 474 (1178)
..+|+|++.-++||+.+.+.||.|||||||+++|.|..+- ..|+|..||.+.++.-. ++.++|++|+.+-+ ..
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 4699999999999999999999999999999999997754 35799999999988776 67899999988655 68
Q ss_pred cHHHHHhcCC----C--CCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCC-CCChHHHHHHHHHHHhccCCCEEEE
Q 001041 475 SIKDNIAYGK----D--DAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLL 546 (1178)
Q Consensus 475 ti~~ni~~~~----~--~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~-~lSgGqkqri~lARal~~~~~illl 546 (1178)
||||-|.|.. + .++ -++.+..+......-.+-.|....||.||.+.. ..|||||.|+++|-++..+++++..
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 9999999852 1 011 112221111111111233556678899998764 5999999999999999999999999
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcc--hhhccCEEEEEeCCEEEEecChhHHh
Q 001041 547 DEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLS--TVRNADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~--~~~~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
||+|.+||+.|.-++.++++++.+ +.|.++.=|+.+ .....|+|++|.+|+++.+|+.++.+
T Consensus 285 De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred ecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999988643 567666667654 56779999999999999999998875
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=257.23 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHH-Hh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQW-IR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~-~r 459 (1178)
.++++|++.+-.++ +++|+++||+|++||+.+|.||||||||||.++|+|. |++++|+|.+||.|+.++++++ -|
T Consensus 3 ~L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr 80 (251)
T COG0396 3 MLEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERAR 80 (251)
T ss_pred eeEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHh
Confidence 47899999987532 4799999999999999999999999999999999995 6889999999999999999876 46
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 460 KKIGLVSQEPVLFTG-SIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
..|...+|.|.=+.| |+.+-+..+... ...+++.++++..++++.. ++..++ ..+|||+|.
T Consensus 81 ~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~------l~R~vN---~GFSGGEkK 151 (251)
T COG0396 81 AGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF------LERYVN---EGFSGGEKK 151 (251)
T ss_pred cCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHH------hhcccC---CCcCcchHH
Confidence 779999999987765 666665532111 1123334444444433311 222333 359999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhcc--CEEEEEeCCEEEEecChhH
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA--DMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~--d~i~~l~~G~i~~~g~~~~ 606 (1178)
|.-|+.+++.+|++.|||||-|+||..+-+.|.+.+..+. +++++++|||.-..+... |+|.||-+|+|+..|.+ +
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-e 230 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-E 230 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-H
Confidence 9999999999999999999999999999999999998876 478999999999888764 99999999999999999 6
Q ss_pred Hhc
Q 001041 607 LVE 609 (1178)
Q Consensus 607 l~~ 609 (1178)
|..
T Consensus 231 l~~ 233 (251)
T COG0396 231 LAE 233 (251)
T ss_pred HHH
Confidence 654
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=259.23 Aligned_cols=187 Identities=28% Similarity=0.422 Sum_probs=154.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC--cccH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF--TGSI 476 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~--~~ti 476 (1178)
.++|+||||++++||.+||+|+||||||||+++|.|.++|++|+|.++| +|++.----.=| ..|-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccch
Confidence 4699999999999999999999999999999999999999999999999 455433333223 4589
Q ss_pred HHHHhcCC--CCCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 001041 477 KDNIAYGK--DDATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1178)
Q Consensus 477 ~~ni~~~~--~~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1178)
||||.+-. ...+. +.+.+..+-++|.+++ .....+.|.|++.|++.|-|.-.+|||||+||.+
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi-----------~~PvktYSSGM~aRLaFsia~~~~pdILllDEvl 175 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFI-----------DQPVKTYSSGMYARLAFSVATHVEPDILLLDEVL 175 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh-----------hCchhhccHHHHHHHHHhhhhhcCCCEEEEehhh
Confidence 99997621 11233 3334444445555543 3344689999999999999999999999999999
Q ss_pred CCCCHHhHHHHHHHHHHH-hcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 551 SALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 551 s~lD~~~~~~i~~~i~~~-~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|..|+.=.+.-.+.+.++ .+++|+|+|+|+++.+++ ||++++|++|+|...|++++..+
T Consensus 176 avGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 176 AVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 999999887777777777 678999999999999976 99999999999999999999865
|
|
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-25 Score=248.78 Aligned_cols=194 Identities=23% Similarity=0.392 Sum_probs=164.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|.++|+-.--|+. ..+...++|.|++|-.+.|.||+|||||+|.+.|.|+.|...|...+.- +.+|
T Consensus 481 gI~lenIpvItP~~--~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~m 547 (728)
T KOG0064|consen 481 GIILENIPVITPAG--DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNI 547 (728)
T ss_pred ceEEecCceeccCc--ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------Ccce
Confidence 48899988777653 3588999999999999999999999999999999999999999877653 3469
Q ss_pred EEEcCCCCCCcccHHHHHhcCC-------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGK-------DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
-|+||.|..--||+||-|.++. ..++|.+++..++.++++..+ +-..|.|.... --.-||||+|||+++||
T Consensus 548 FYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~-qr~~g~da~~d-Wkd~LsgGekQR~~mAR 625 (728)
T KOG0064|consen 548 FYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHIL-QREGGWDAVRD-WKDVLSGGEKQRMGMAR 625 (728)
T ss_pred EeccCCCccCcCcccceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHH-HhccChhhhcc-HHhhccchHHHHHHHHH
Confidence 9999999988999999999864 246788899999999987654 44567776543 33469999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEE
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
..|++|+.-+|||+|||+-.+.|..+.++.++. |-+.|-||||++..+.-.+.+-.
T Consensus 626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred HHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 999999999999999999999999999998875 68999999999988764444444
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=237.89 Aligned_cols=228 Identities=27% Similarity=0.454 Sum_probs=178.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC-----eecCCCCHHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG-----INLKEFQLQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g-----~~~~~~~~~~ 457 (1178)
-++++++|..|... .--+|+||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++- .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 47788999999754 367999999999999999999999999999999999999999998854 2333344333
Q ss_pred ----HhcceEEEcCCCC--C-C----cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH
Q 001041 458 ----IRKKIGLVSQEPV--L-F----TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG 526 (1178)
Q Consensus 458 ----~r~~i~~v~Q~~~--l-~----~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG 526 (1178)
+|..-++|.|+|- + . .+.|-|-+. .-..-.+..++. ...+|++...- +.+.+.+....+|||
T Consensus 83 RR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlm-a~G~RHYG~iR~-----~a~~WL~~VEI-~~~RiDD~PrtFSGG 155 (258)
T COG4107 83 RRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNIRA-----EAQDWLEEVEI-DLDRIDDLPRTFSGG 155 (258)
T ss_pred HHHHhhhccceeecCccccceeeeccCCccchhHH-hhhhhhhhhHHH-----HHHHHHHhccc-CcccccCcccccchH
Confidence 3456899999993 1 1 123333322 111111112221 12355555432 345677888999999
Q ss_pred HHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecC
Q 001041 527 QKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 527 qkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~ 603 (1178)
++||+-|||-|...|+++++||||.+||......+.+.++.+.. +-.+++|||++...+. +||.+||++|+++|.|-
T Consensus 156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GL 235 (258)
T COG4107 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGL 235 (258)
T ss_pred HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecccc
Confidence 99999999999999999999999999999999999999888753 5689999999999875 99999999999999999
Q ss_pred hhHHhcCCCchHHHHHH
Q 001041 604 HSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 604 ~~~l~~~~~~~~~~~~~ 620 (1178)
.+..+.++...|.++.-
T Consensus 236 TDrvLDDP~hPYTQLLV 252 (258)
T COG4107 236 TDRVLDDPHHPYTQLLV 252 (258)
T ss_pred ccccccCCCCchHHHHH
Confidence 99999998889988753
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-29 Score=255.60 Aligned_cols=202 Identities=25% Similarity=0.391 Sum_probs=158.9
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEc-CC---CCCCc-
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVS-QE---PVLFT- 473 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~-Q~---~~l~~- 473 (1178)
-++.+||||+|++|++++.+|+||+||||++|+|.|.+.|++|.|.++|.+.-+-..+.+|+ +++|. |. -|-.+
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~-~~~v~gqk~ql~Wdlp~ 115 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IGLVMGQKLQLWWDLPA 115 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHH-HHHHhhhhheeeeechh
Confidence 35899999999999999999999999999999999999999999999998776655555554 44432 22 23222
Q ss_pred -ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 001041 474 -GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1178)
Q Consensus 474 -~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1178)
.|.+=|=... +..+.++.+- ...+.+ -| +++..+......||-|||-|.-||.||+++|+||+|||||=+
T Consensus 116 ~ds~~v~~~Iy--~Ipd~~F~~r--~~~l~e---iL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 116 LDSLEVLKLIY--EIPDDEFAER--LDFLTE---IL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhhHHHHHHHH--hCCHHHHHHH--HHHHHH---Hh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 2322222211 2344444432 222223 22 566777777789999999999999999999999999999999
Q ss_pred CCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 553 LDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||..+...+.+.+++.. .++||++.||.++-+.. ||||++|+.|+++..|+.++|.++
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~ 247 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ 247 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH
Confidence 99999999999998764 47899999999998865 999999999999999999988764
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=299.63 Aligned_cols=220 Identities=31% Similarity=0.487 Sum_probs=179.2
Q ss_pred ccEEEEeEEEECCCCC--CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC---CCCcEEECCeecCCCCHH
Q 001041 382 GDIELRDVYFSYPARP--NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP---QAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~--~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~---~~G~i~i~g~~~~~~~~~ 456 (1178)
-.+.++|++..-++.. .+.+|+|||.+++|||+.||.||||||||||+++|.|-.+. .+|+|.+||+ ..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cCchh
Confidence 3578999998876542 46799999999999999999999999999999999998874 6899999993 45566
Q ss_pred HHhcceEEEcCCCCCC-cccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCC--ccchhcCC-CCCCChHH
Q 001041 457 WIRKKIGLVSQEPVLF-TGSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQG--IDTLVGEH-GTQLSGGQ 527 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~~~~g--~~t~~~~~-g~~lSgGq 527 (1178)
.+++..|||+||..++ +-||+|++.|.. |. .+.++..+ ..++.+.+|..- -||.+|.. ...+||||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~-----~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRE-----RVEEVISELGLEKCADTLIGNPGIRGLSGGE 175 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCChhhccceecCCCCCccccch
Confidence 7888999999999987 579999998742 21 12222221 112233333211 45777643 35799999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch--hhccCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
|+|+++|.-++.||.||+||||||+||+.+...+.+.++++. +|||||+.=|+++. ....|++++|.+|++++.|++
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~ 255 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSP 255 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCH
Confidence 999999999999999999999999999999999999998875 58999999999975 466999999999999999999
Q ss_pred hHHhc
Q 001041 605 SKLVE 609 (1178)
Q Consensus 605 ~~l~~ 609 (1178)
+++.+
T Consensus 256 ~~~~~ 260 (613)
T KOG0061|consen 256 RELLE 260 (613)
T ss_pred HHHHH
Confidence 88753
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-29 Score=247.88 Aligned_cols=136 Identities=38% Similarity=0.727 Sum_probs=121.6
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcc-cHHHHH
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNI 480 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni 480 (1178)
|+|+||++++|++++|+|++|||||||+++|+|.++|.+|+|.++|.++...+....|+.++|++|+++++.+ |+++|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 6899999999999999999999999999999999999999999999999998889999999999999998865 59999
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1178)
..+++++++++..++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 80 ------~~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23456666666665433 34677888889999999999999999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-27 Score=280.49 Aligned_cols=203 Identities=29% Similarity=0.391 Sum_probs=171.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|+++.|++. +++++++||.|.+|+++||+||||+|||||+++|.|...|.+|+|.++- .-+
T Consensus 320 ~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~-----------~v~ 386 (530)
T COG0488 320 LVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-----------TVK 386 (530)
T ss_pred eeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC-----------ceE
Confidence 458999999999643 5799999999999999999999999999999999999999999998864 127
Q ss_pred eEEEcCCC-CC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 462 IGLVSQEP-VL-FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 462 i~~v~Q~~-~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||.+|+- .+ -+.|+-|++.-..|...+.+++..+...++...- +......||||||.|+.||+.++.
T Consensus 387 igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~----------~~~~v~~LSGGEk~Rl~La~ll~~ 456 (530)
T COG0488 387 IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGED----------QEKPVGVLSGGEKARLLLAKLLLQ 456 (530)
T ss_pred EEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHH----------HhCchhhcCHhHHHHHHHHHHhcc
Confidence 99999998 33 3558999998666555567777776665443221 234456799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEEe-cChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEK-GTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~-g~~~~l~~~ 610 (1178)
+|.+|||||||.+||.++...+.++|..+ ..|+|+|||+.+++.. |++|+.+++ ++.+. |++++..+.
T Consensus 457 ~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 457 PPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999999999999999999999886 4699999999999987 999999998 77765 888877653
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=254.77 Aligned_cols=193 Identities=24% Similarity=0.339 Sum_probs=127.8
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC-C------eecCCC---CHHHHhc-ceEEEc
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID-G------INLKEF---QLQWIRK-KIGLVS 466 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~-g------~~~~~~---~~~~~r~-~i~~v~ 466 (1178)
+.++|+++||++++||+++|+|+||||||||+..+.- .+|++.+. + ..+..+ +...++. ..++..
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAI 82 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEEe
Confidence 3469999999999999999999999999999632221 12433211 0 000000 0111221 234444
Q ss_pred CCCCC-Cc-----ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 467 QEPVL-FT-----GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 467 Q~~~l-~~-----~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|++.. ++ +++.+...+.......+..... .+.++.+ |+.. .......+||||||||++||||++.
T Consensus 83 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~laral~~ 154 (226)
T cd03270 83 DQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRER------LGFLVDV--GLGYLTLSRSAPTLSGGEAQRIRLATQIGS 154 (226)
T ss_pred cCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHH------HHHHHHC--CCCcccccCccCcCCHHHHHHHHHHHHHHh
Confidence 54431 11 1222222110000011111111 1233333 4443 3567788999999999999999999
Q ss_pred CC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eCCEEEEec
Q 001041 540 DP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKG 602 (1178)
Q Consensus 540 ~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g 602 (1178)
+| +++||||||++||+.+...+.+.++++. ++.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 155 ~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 155 GLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 98 5999999999999999999999998764 478999999999998889999999 999999976
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.6e-24 Score=246.86 Aligned_cols=391 Identities=12% Similarity=0.129 Sum_probs=300.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChh------hHHHHHhhhHHHHHHHH
Q 001041 764 ALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSG------AIGARLSADAASVRALV 837 (1178)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G------~i~~r~s~D~~~i~~~l 837 (1178)
+.+|..++.+..++...+.|+......++-.-|-+.+.++-+...-.|+. ...| ..=.|+..|+...-+.-
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l---~~~~~~~~~dNpDQRi~eDi~~~t~~t 165 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRL---AQAGGIGLIDNPDQRIQEDIRNFTETT 165 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH---HhcccccCCCChHHhHHHHHHHHHhhH
Confidence 44455555556666667778887888888888888888888887754544 2333 23479999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001041 838 GDALARIVQNISTAAAGLIIAF---------------TASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1178)
Q Consensus 838 ~~~l~~~~~~~~~~i~~ii~~~---------------~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1178)
......++.++++++...+++. -+...+.+++++.+++..++...+.|.+.+.+-+.++..++..
T Consensus 166 ~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR 245 (604)
T COG4178 166 LDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFR 245 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHH
Confidence 7777888888777776666665 3455666777777888888888899999999999999999998
Q ss_pred HHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 001041 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV 982 (1178)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l 982 (1178)
..+.-.-++...|-.|+.|+.+.++.+...+...+...+.......+..+......+..++-+..++-....|.+++|++
T Consensus 246 ~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~l 325 (604)
T COG4178 246 YSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGL 325 (604)
T ss_pred HHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHH
Confidence 88888899999999999999999988888777776655554444444444444444444444455666678899999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCC--CCCCCCCCC--Ccc---cCccccEEEeeeEEeCCCC
Q 001041 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES--KIDPSDESG--TIL---EDVKGEIELHHVSFKYPSR 1055 (1178)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~--~~~~~~~~~--~~~---~~~~g~I~f~nVsf~Y~~~ 1055 (1178)
+....+.......++......+.+..-.+...|+.++.+.-. +.++..... ... ...+..|+|+|++..-|++
T Consensus 326 mqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~ 405 (604)
T COG4178 326 MQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC
Confidence 999999999999999999888999999999999988753221 000000000 000 0014679999999999854
Q ss_pred CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccH
Q 001041 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135 (1178)
Q Consensus 1056 ~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTI 1135 (1178)
.+.|+++||.|+|||.+-|.|+||||||||+++|.|+|+..+|+|.+=.. +.+-++||.|++=.||+
T Consensus 406 --~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~-----------~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 406 --QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPAD-----------SALLFLPQRPYLPQGTL 472 (604)
T ss_pred --CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCC-----------CceEEecCCCCCCCccH
Confidence 36899999999999999999999999999999999999999999876411 23589999999999999
Q ss_pred HHHHhcCCCC-CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1136 RANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1136 reNI~~g~~~-~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
||=|.|-..+ +.+|+|+.+++.++++.+++.+|.+
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~ 508 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE 508 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc
Confidence 9999995433 3899999999999999999999743
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-27 Score=231.04 Aligned_cols=188 Identities=22% Similarity=0.377 Sum_probs=155.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++.+|++..- .+..++.++||++.+||.+-|.||||||||||+++|.|+++|.+|+|.++|.++...... .+...-
T Consensus 3 L~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~-~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRES-YHQALL 78 (209)
T ss_pred chhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhh-HHHHHH
Confidence 3456666554 345799999999999999999999999999999999999999999999999888765432 356788
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCC---CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDD---ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|+.-.|-+= .-|+.||+.|-... .+.+.++++++.+++... +.+| ..+||.|||.|+||||-+++
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp----------~~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP----------VGQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc----------hhhcchhHHHHHHHHHHHcC
Confidence 888888765 57999999986442 346889999998887653 3333 35799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~ 586 (1178)
.+++.|||||+++||.+....+-..+.... ++.-||+.||..-.+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 999999999999999999999988887665 56788889998765543
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=253.91 Aligned_cols=193 Identities=25% Similarity=0.408 Sum_probs=139.8
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-----ccC-----CCCCC-----------cEEECCeecCCCC---H-
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIE-----RFY-----DPQAG-----------EVLIDGINLKEFQ---L- 455 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-----g~~-----~~~~G-----------~i~i~g~~~~~~~---~- 455 (1178)
.|+|++++||.|++++|+|+||||||||++.++ +.+ .|..+ -|.+|..++..-+ +
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 699999999999999999999999999998663 111 12222 2455555543211 0
Q ss_pred ------HHHhc----------------ceEEEcCCCC-CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCc
Q 001041 456 ------QWIRK----------------KIGLVSQEPV-LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGI 512 (1178)
Q Consensus 456 ------~~~r~----------------~i~~v~Q~~~-l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 512 (1178)
+.+|+ .+.|..++.. +.+.|+.||+.|...... +.+ ..+.++.+ |+
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~---~~~------~~~~L~~v--gL 158 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPK---IAR------KLQTLCDV--GL 158 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhh---HHH------HHHHHHHc--CC
Confidence 11111 1334444442 235567777665422111 111 12233333 66
Q ss_pred cc-hhcCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhcc
Q 001041 513 DT-LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNA 587 (1178)
Q Consensus 513 ~t-~~~~~g~~lSgGqkqri~lARal~~~---~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~ 587 (1178)
+. ..++...+||||||||++|||||.++ |+++||||||++||++....+.+.++++. ++.|+|+|+|+++.+..|
T Consensus 159 ~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~~a 238 (261)
T cd03271 159 GYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCA 238 (261)
T ss_pred chhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhC
Confidence 65 46888899999999999999999996 79999999999999999999999998765 478999999999999999
Q ss_pred CEEEEE------eCCEEEEecCh
Q 001041 588 DMIAVI------HRGKIVEKGTH 604 (1178)
Q Consensus 588 d~i~~l------~~G~i~~~g~~ 604 (1178)
|+|++| ++|+|+++|++
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCCC
Confidence 999999 89999999975
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-26 Score=295.09 Aligned_cols=210 Identities=27% Similarity=0.375 Sum_probs=149.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHH---------HHhccCCCCC----Cc----EEE
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS---------LIERFYDPQA----GE----VLI 445 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~---------~l~g~~~~~~----G~----i~i 445 (1178)
.++++|++. ..|+|+|++|++||+++|+|+||||||||++ .|.|...+.. +. |.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 478887751 2699999999999999999999999999999 4555432211 11 344
Q ss_pred CCeecCCC----CH------HHHh---------c-----ceEEEcCC------------------CC-------------
Q 001041 446 DGINLKEF----QL------QWIR---------K-----KIGLVSQE------------------PV------------- 470 (1178)
Q Consensus 446 ~g~~~~~~----~~------~~~r---------~-----~i~~v~Q~------------------~~------------- 470 (1178)
|-.++..- +. +++| + ...+.+|. |.
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 44433221 01 1333 1 12223332 10
Q ss_pred -------CC-cccHHHHHhcCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHHHHHH
Q 001041 471 -------LF-TGSIKDNIAYGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 471 -------l~-~~ti~~ni~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lARa 536 (1178)
.+ .-||.||+.++..++ +.+++.+.+ +.++.+ |++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l------~~L~~v--GL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI------HALCSL--GLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH------HHHHHc--CCcchhhcCccccCCHHHHHHHHHHHH
Confidence 12 237888888763211 112222222 123333 67665 688889999999999999999
Q ss_pred hc---cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEe------CCEEEEecChhH
Q 001041 537 IL---KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIH------RGKIVEKGTHSK 606 (1178)
Q Consensus 537 l~---~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~------~G~i~~~g~~~~ 606 (1178)
|+ .+|++|||||||++||+.+.+.+.+.++++. ++.|+|+|+|+++.+..||+|++|+ +|+++..|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 5999999999999999999999999998875 4789999999999998899999996 789999999887
Q ss_pred Hh
Q 001041 607 LV 608 (1178)
Q Consensus 607 l~ 608 (1178)
+.
T Consensus 904 l~ 905 (1809)
T PRK00635 904 LI 905 (1809)
T ss_pred HH
Confidence 64
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=243.78 Aligned_cols=164 Identities=23% Similarity=0.297 Sum_probs=130.7
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC---------CcEEECCeecCCCCHHHHhcceEEEcCCCCCCc
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA---------GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~---------G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 473 (1178)
+++++++++| +++|+||||||||||+++|.|++++.. |++.++|.+.... ..+.+|+|++|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 6789999999 999999999999999999999986653 4677777766432 2357899999999877
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCC
Q 001041 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEA 549 (1178)
Q Consensus 474 ~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~----~~~~illlDe~ 549 (1178)
|+.. ..+++.++++. ++- .......||||||||++|||++. ++|++++||||
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~~~----~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP 144 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------PGK----KVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEV 144 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------CCc----cccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCC
Confidence 2211 12333333322 211 23445679999999999999986 57799999999
Q ss_pred CCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
|++||+.....+.+.++++.++.|+|+|||+++.+..||+++.+..
T Consensus 145 ~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 145 DAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred cccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999988778899999999999888999999863
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=255.84 Aligned_cols=132 Identities=27% Similarity=0.452 Sum_probs=122.5
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+|+|+||+++|++. +.++|+||||+|++||++||||+||||||||+++|+|+++ .+|+|+|||+|+.+++..++|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999742 3469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|+++|+++.. ..++++++++++.+++++++.++|+||||.+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~--~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~ 132 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYG--KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVL 132 (275)
T ss_pred EEEECCCcccchhhHHHHhhhcc--CCCHHHHHHHHHHcCCHHHHHhCccccccee
Confidence 99999999999999999997431 3678999999999999999999999999987
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=247.37 Aligned_cols=196 Identities=28% Similarity=0.348 Sum_probs=134.5
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
.+|...+.+.+|++ +.+|++-++++..|..+|+|||||+|||||+++|.. |.|.+-.++ +++|.-
T Consensus 79 ~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~ 143 (582)
T KOG0062|consen 79 KDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGD 143 (582)
T ss_pred cceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheecc
Confidence 46889999999974 469999999999999999999999999999999997 444322211 000000
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCC----CHHHHHH-HHHHhcHHHHHHhCCCCccchhcCC-CCCCChHHHHHHHHHH
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDA----TTEEIRV-ATELANAAKFIDKLPQGIDTLVGEH-GTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~----~~~~~~~-~~~~~~~~~~i~~~~~g~~t~~~~~-g~~lSgGqkqri~lAR 535 (1178)
-....| ..+-.++-|.-+..-.+.. +.+++.. ++.-. |...+.-.+ -..||||=|=|++|||
T Consensus 144 ~t~~~~-~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl-----------GFt~emq~~pt~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 144 DTEALQ-SVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL-----------GFTPEMQLQPTKSLSGGWRMRLALAR 211 (582)
T ss_pred chHHHh-hhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC-----------CCCHHHHhccccccCcchhhHHHHHH
Confidence 000001 0223344444443211100 1122222 22222 333333332 2579999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhH
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSK 606 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~ 606 (1178)
|+..+||||||||||..||..+..++.+.+.++ ..|+|+|+|+-+++.. |..|+.+++-++- +.|++++
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 999999999999999999999999999998875 3899999999999986 8888898875553 3444433
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-25 Score=212.77 Aligned_cols=202 Identities=28% Similarity=0.373 Sum_probs=143.2
Q ss_pred EEEEeEEEECC----CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC--C--eecCCCCH
Q 001041 384 IELRDVYFSYP----ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID--G--INLKEFQL 455 (1178)
Q Consensus 384 i~~~~~~~~y~----~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~--g--~~~~~~~~ 455 (1178)
+..+|++.++- +.-.-|+++|+||+++.||++++-||||+|||||+++|-+-|.|++|+|.+. | +|+....+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 55667765552 1112479999999999999999999999999999999999999999999884 2 34444444
Q ss_pred HH----HhcceEEEcCCCC-CCccc----HHHHHh-cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 456 QW----IRKKIGLVSQEPV-LFTGS----IKDNIA-YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 456 ~~----~r~~i~~v~Q~~~-l~~~t----i~~ni~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
.. .|+.||||+|--- +-.-+ +.|-+. .|-+ .+....++. .+... -++|..+... ...++||
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~--~~~a~~~a~---~Ll~r-LnlperLW~L---aPaTFSG 155 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP--REVARAKAA---DLLTR-LNLPERLWSL---APATFSG 155 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC--HHHHHHHHH---HHHHH-cCCCHHHhcC---CCcccCC
Confidence 32 3567999999532 11211 233222 1211 111111111 11111 1344444332 3478999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEe
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1178)
|++||+.|||.+.-+-+||+|||||++||+.+.+.+.+.|.+.. +|+.+|=|=|+-+.=.. |||++-|.
T Consensus 156 GEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 156 GEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred chheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 99999999999999999999999999999999999999997654 67888889999776544 89988774
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.4e-25 Score=278.65 Aligned_cols=216 Identities=22% Similarity=0.417 Sum_probs=182.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC-CHHHHhc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRK 460 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~ 460 (1178)
..+..+|++..|+.+.. +.+++|+.+++||+.|+-|+|||||||+++++.|+..|++|++.++|.++..- +....++
T Consensus 563 ~~~~~~~L~k~y~~~~~--Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG--AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchhh--hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 35888999999976532 89999999999999999999999999999999999999999999999999765 4456899
Q ss_pred ceEEEcCCCCCC-cccHHHHHhcCC-----CCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLF-TGSIKDNIAYGK-----DDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~-~~ti~~ni~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
.+|||||+..++ .-|.||.+.+.. +..+ .+.++..++..++.+. ......++|||+|.|+++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~-----------~~~~~~~ySgG~kRkLs~ 709 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPY-----------ANKQVRTYSGGNKRRLSF 709 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhh-----------hccchhhCCCcchhhHHH
Confidence 999999998887 579999998732 2111 1223444444443332 222346899999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCC-eEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~-t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|-|++.+|++++|||||+++||.+++.+.+.|.+..++. .+|+.||.++..+. |||+.+|.+|++...|++++|..+
T Consensus 710 aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKsr 788 (885)
T KOG0059|consen 710 AIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKSR 788 (885)
T ss_pred HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHhh
Confidence 999999999999999999999999999999999988754 99999999999986 999999999999999999999754
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-22 Score=220.91 Aligned_cols=273 Identities=21% Similarity=0.342 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 722 LAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCF 801 (1178)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 801 (1178)
++++++.++.++..+..+++++.+++...............+...++++.++...+.....+...+.+.++..++|.+++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 81 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRLF 81 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666777777778889999998754332211111122222233334444455555566678999999999999999
Q ss_pred HHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 001041 802 EKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGY 881 (1178)
Q Consensus 802 ~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~ 881 (1178)
+|+++.|.+||+ ++++|++++|+++|++.+++.+.+.+..++..+..+++.+++++.++|+++++++++.|+..++..
T Consensus 82 ~~~~~~~~~~~~--~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~ 159 (275)
T PF00664_consen 82 EKLLRLPYSYFD--KNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISF 159 (275)
T ss_dssp HHHHHSHHHHHH--HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhh--hhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhh
Confidence 999999999999 599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHH
Q 001041 882 TQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFY 961 (1178)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1178)
...++.++..++.++..++..+.+.|.++|+++||+||.|+++.++|++..++..+...+.........+....+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T PF00664_consen 160 IFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSI 239 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHH
Q 001041 962 AASFYAGARL-VEDGKATFSDVFKVFFSLTMTAIGI 996 (1178)
Q Consensus 962 ~~~~~~g~~l-~~~g~~t~g~l~~~~~~~~~~~~~l 996 (1178)
++++++|+++ +.+|.+++|+++++..+...+..|+
T Consensus 240 ~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 240 VLILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 9999999999 9999999999999999998888775
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=233.69 Aligned_cols=192 Identities=19% Similarity=0.192 Sum_probs=138.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEe-CCCEEEEEcCCCCcHHHHHHHHhc-cCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISIS-SGTTAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~-~g~~~~ivG~~GsGKStl~~~l~g-~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.|+++|+. +|.++ ++++|+.. +|++++|+||||||||||+++|.+ ++.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 47888888 66432 46677644 589999999999999999999995 555554544433 1112223334466
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCC-CccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQ-GIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
.|++++|++...-...| ++ ..+.++..+... ++. ++++.+...+.+||||||||++||||++.
T Consensus 77 ~v~~~f~~~~~~~~~~r----~~--gl~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~ 140 (213)
T cd03279 77 EVSFTFQLGGKKYRVER----SR--GLDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLALAL 140 (213)
T ss_pred EEEEEEEECCeEEEEEE----ec--CCCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHHHHh
Confidence 79999999843222222 11 233333332210 112 35666677888999999999999999974
Q ss_pred ----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCEE
Q 001041 540 ----------DPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGKI 598 (1178)
Q Consensus 540 ----------~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i 598 (1178)
+|+++||||||++||+.+...+.+.++++.+ ++|+|+|||+++.+.. +|+++++++|.+
T Consensus 141 ~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 141 SEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 6789999999999999999999999988765 7899999999998866 899999998853
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-25 Score=212.19 Aligned_cols=208 Identities=25% Similarity=0.402 Sum_probs=171.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+.++||+..- -|-.+|..+..||.+-+|||+|||||||+..+.|+. |-+|+|.++|.++.....+++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 4566665432 356788899999999999999999999999999987 67899999999999999999988888
Q ss_pred EEcCCC-CCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc--
Q 001041 464 LVSQEP-VLFTGSIKDNIAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-- 539 (1178)
Q Consensus 464 ~v~Q~~-~l~~~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~-- 539 (1178)
|..|+. ..|...|..-+.+..|..+. +++..+|++- +++..+++.-..||||+-||+-||-.+++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L-----------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~ 144 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhh-----------cccchhhhhhhhcCcccceeeEEeEEEEEec
Confidence 988865 57888899988887774111 2222333222 55666777788999999999999988876
Q ss_pred -----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcc-hhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 -----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 -----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~-~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
..++||+|||.++||...+..+...+..++ +|.++|+..|+++ ++++||++..+..|++..+|..+|.+..
T Consensus 145 Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred CCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 357999999999999998888887777765 5899999999997 6899999999999999999999988754
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-24 Score=238.21 Aligned_cols=191 Identities=25% Similarity=0.340 Sum_probs=129.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----------------CCCCC------
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY----------------DPQAG------ 441 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~----------------~~~~G------ 441 (1178)
|+++|.. +|. +..++.+++ |++++|+||||||||||+++|.+.+ .+.+|
T Consensus 4 i~~~nfk-sy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~ 74 (243)
T cd03272 4 VIIQGFK-SYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSA 74 (243)
T ss_pred EEEeCcc-Ccc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceE
Confidence 5566532 353 234677776 8899999999999999999998443 33344
Q ss_pred --cEEECCeecC-CC--CHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHH--HhCCCC---
Q 001041 442 --EVLIDGINLK-EF--QLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFI--DKLPQG--- 511 (1178)
Q Consensus 442 --~i~i~g~~~~-~~--~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~g--- 511 (1178)
+|.+++.+-. .. +...++++++++||++.++.. ..+.++++..++..++...- ..+|+|
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~ 143 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKIN 143 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchH
Confidence 4444442211 00 122345567777777665431 12334444444433322100 001111
Q ss_pred ----ccchhcCCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 512 ----IDTLVGEHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 512 ----~~t~~~~~g~~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
+.....+.+.+||||||||++||||++ ++|+++||||||++||+.+.+.+.+.++++.+++|+|+++|+.+.
T Consensus 144 ~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~ 223 (243)
T cd03272 144 SLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPEL 223 (243)
T ss_pred HhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 122345677899999999999999996 468999999999999999999999999888777888889999887
Q ss_pred hhccCEEEEEe
Q 001041 584 VRNADMIAVIH 594 (1178)
Q Consensus 584 ~~~~d~i~~l~ 594 (1178)
...||++++|+
T Consensus 224 ~~~~d~i~~l~ 234 (243)
T cd03272 224 LEVADKFYGVK 234 (243)
T ss_pred HhhCCEEEEEE
Confidence 78899999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-24 Score=241.59 Aligned_cols=197 Identities=29% Similarity=0.413 Sum_probs=164.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|.++|++|.|++.+ .++++++|-|.+++.+++|||||||||||++++.|.+.|..|.|.-.-+ .++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-----------~~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-----------NKL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------ccc
Confidence 589999999997543 7999999999999999999999999999999999999999999966543 256
Q ss_pred EEEcCCC---CCCcccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 GLVSQEP---VLFTGSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~~v~Q~~---~l~~~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++-.|+- .-...+.-++..--.++ -..+++...+..+++..+.+..| -.+||+|||.||+.||.++
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p----------~~~LS~Gqr~rVlFa~l~~ 525 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP----------MSQLSDGQRRRVLFARLAV 525 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc----------hhhcccccchhHHHHHHHh
Confidence 6666654 23567788887754453 45677888888888875544333 2589999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEE-ecCh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE-KGTH 604 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~-~g~~ 604 (1178)
..|.+|+|||||++||.++...+.++|.+. ..++|+|+|+...+.+ +++|.+.++|.+.. .|.+
T Consensus 526 kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 526 KQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred cCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999885 4689999999999987 89999999998874 4443
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-24 Score=210.08 Aligned_cols=128 Identities=28% Similarity=0.441 Sum_probs=113.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1178)
|+|+||+.+|+.+ +++|+||||+|++||.+=++|||||||||+++||++-..|++|+|.++|.|+..+.- --||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 8999999999864 569999999999999999999999999999999999999999999999999988864 45999
Q ss_pred hccccccccccc-cccHHHHHhcC-----CCCCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1120 QMGLVSQEPVLF-NDTIRANIAYG-----KGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF-~gTIreNI~~g-----~~~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+||+|+||--|. +-|+.||++|. .++..=.+++.++++.+++.+-...||..+
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~L 138 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQL 138 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcccc
Confidence 999999999765 77999999974 222223456789999999999999999865
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.6e-23 Score=236.78 Aligned_cols=212 Identities=23% Similarity=0.373 Sum_probs=167.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH-HHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 461 (1178)
.++++|++.. ..++|+||++++||+++|.|-.|||+|=|+++|+|.-++.+|+|.+||+++.-.++. .++..
T Consensus 263 ~l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 263 VLEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred EEEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 3667776532 157899999999999999999999999999999998888999999999998877654 78889
Q ss_pred eEEEcCCCC----CCcccHHHHHhcCC-CCCCHH-HHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEPV----LFTGSIKDNIAYGK-DDATTE-EIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~~----l~~~ti~~ni~~~~-~~~~~~-~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lA 534 (1178)
|+|||.|-- +...+|++|+.+.. ...... -+....+.....++++.|. ..+. ......+||||-+|++.||
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~--Ik~~s~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLR--IKTPSPEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcC--cccCCccchhhcCCchhhhhHHHH
Confidence 999999863 44789999998761 111100 1222333333445555542 1111 1233457999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
|.|+.+|+||||||||-++|.-+...|.+.|+++. +|+++|+||..+..+. .||||+||.+|+|+..=+
T Consensus 414 rwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 414 RWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred HHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999876 5799999999998775 699999999999986433
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-24 Score=224.05 Aligned_cols=163 Identities=24% Similarity=0.294 Sum_probs=127.4
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHh----ccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCC-----CCCc-c
Q 001041 405 FSISISSGTTAALVGQSGSGKSTVISLIE----RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-----VLFT-G 474 (1178)
Q Consensus 405 i~l~i~~g~~~~ivG~~GsGKStl~~~l~----g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-----~l~~-~ 474 (1178)
.++++.+| +++|+||||||||||+.+|. |...|..|.+..+...+. ....+..|++++|++ .++. -
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~---~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIR---EGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHh---CCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 988888776652221111 123456899999998 2332 3
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHH------HHHHHHhccCCCEEEEeC
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR------IAIARAILKDPRILLLDE 548 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr------i~lARal~~~~~illlDe 548 (1178)
|+.+|+.++. .+++. +.+ .+...+||+||||| ++||||+..+|++++|||
T Consensus 92 ~~~~~~~~~~----~~~~~---------~~~-----------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDE 147 (204)
T cd03240 92 AILENVIFCH----QGESN---------WPL-----------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDE 147 (204)
T ss_pred hHhhceeeec----hHHHH---------HHH-----------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcC
Confidence 9999998642 22221 111 45567899999996 799999999999999999
Q ss_pred CCCCCCHHhHH-HHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeC
Q 001041 549 ATSALDAESEK-VVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 549 ~ts~lD~~~~~-~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
||++||+++.. .+.+.++++.+ ++|+|++||+++.+..||+|++|++
T Consensus 148 P~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 148 PTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred CccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 99999999998 99999988765 6799999999998888999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=215.05 Aligned_cols=127 Identities=29% Similarity=0.452 Sum_probs=112.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+|+|||++|. ++.+++|+||+|++||.+.+||||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 79999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-cccHHHHHhcCCC-CCCC----HHHHHHHHHHcCch--HHHhhccccc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKG-GDAT----EAEIQAASEMANAH--KFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~as----deei~~Al~~A~~~--dfI~~LP~gl 1172 (1178)
||-|..-|| +-||.|||++-+. ...+ ++.+.+.++..++. +|-.+.|..+
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eL 136 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHEL 136 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhc
Confidence 999999999 7899999986421 1223 44567788899996 5888877644
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-23 Score=208.62 Aligned_cols=122 Identities=32% Similarity=0.487 Sum_probs=109.0
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC-----CeEEECCcccCC--CCh
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-----GHITLDGVEIQK--LQL 1114 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~-----G~I~IDG~dI~~--i~l 1114 (1178)
.++++|+++.|. +..+|+|||++|++++.+|++|||||||||+++.|-|+.|... |+|.+||+||.+ ++.
T Consensus 7 ~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 589999999996 3459999999999999999999999999999999999999976 999999999976 579
Q ss_pred HHHHHhccccccccccccccHHHHHhcCCCC-C----CCHHHHHHHHHHcCchHHHh
Q 001041 1115 KWLRQQMGLVSQEPVLFNDTIRANIAYGKGG-D----ATEAEIQAASEMANAHKFIC 1166 (1178)
Q Consensus 1115 ~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~-~----asdeei~~Al~~A~~~dfI~ 1166 (1178)
-.||++||+|+|.|.-|..||+||++||..- . .-||-++++++.|.+||-+.
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVK 140 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK 140 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhH
Confidence 9999999999999999999999999999431 1 22455788999999999774
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=221.90 Aligned_cols=133 Identities=33% Similarity=0.573 Sum_probs=122.4
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|.|+++|++++|+.. +.++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 469999999999742 2469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++++||+|.+|++|++|||.+.. ..+.+++.++++..++.+++.+||.|++|.+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~ 133 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFG--EYSDEELWQALERVGLKEFVESLPGGLDTVV 133 (221)
T ss_pred EEEECCCCccccchHHHHhCcCC--CCCHHHHHHHHHHhCcHHHHHhccccccccc
Confidence 99999999999999999998753 3577889999999999999999999998864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-23 Score=234.62 Aligned_cols=125 Identities=30% Similarity=0.493 Sum_probs=106.0
Q ss_pred CccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-----CCCCeEEECCcccC--
Q 001041 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-----PDAGHITLDGVEIQ-- 1110 (1178)
Q Consensus 1038 ~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-----p~~G~I~IDG~dI~-- 1110 (1178)
+..+.|+|+||+|+|++. ..++|+||||+|++||++|||||||||||||+++|+|+++ |++|+|.|||+|++
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 445789999999999642 3469999999999999999999999999999999999997 57999999999997
Q ss_pred CCChHHHHHhccccccccccccccHHHHHhcCCC-CCCCHHH-----HHHHHHHcCchH
Q 001041 1111 KLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG-GDATEAE-----IQAASEMANAHK 1163 (1178)
Q Consensus 1111 ~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~-~~asdee-----i~~Al~~A~~~d 1163 (1178)
++++..+|+++++|||+|.+|++||+|||.|++. ...++++ +.++++.+++++
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~ 213 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD 213 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc
Confidence 5567889999999999999999999999998742 1245544 455677777644
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-23 Score=227.12 Aligned_cols=182 Identities=19% Similarity=0.221 Sum_probs=132.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC-CCcEEECCe-ecCCCC-H-HHHhcceEEEcCCCCC----------CcccHH
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGI-NLKEFQ-L-QWIRKKIGLVSQEPVL----------FTGSIK 477 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~-~~~~~~-~-~~~r~~i~~v~Q~~~l----------~~~ti~ 477 (1178)
..+++||||||||||||+.+|.+.+.+. .|++...|. ++-... . ...+.++++++|+|-. ..-||+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 5699999999999999999999999876 468888776 432111 1 1124589999999621 145778
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhcHHH----------HHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc-
Q 001041 478 DNIAYGKDD--------ATTEEIRVATELANAAK----------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL- 538 (1178)
Q Consensus 478 ~ni~~~~~~--------~~~~~~~~~~~~~~~~~----------~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~- 538 (1178)
+|+..+... ...+++.+.++.+++.- .+..+-+. .........+||||||||++||||++
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 777654321 12344555555544320 00000000 02345667889999999999999997
Q ss_pred ---cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEe
Q 001041 539 ---KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594 (1178)
Q Consensus 539 ---~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~ 594 (1178)
.+|+++||||||++||+.....+.+.++++.++.|+|+|||+.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 57899999999999999999999999998877889999999988888999998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-23 Score=256.73 Aligned_cols=199 Identities=25% Similarity=0.428 Sum_probs=166.2
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--CCCCcEEECCeecCCCCHHHHhcceEEEcCCC-CCCcc
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLFTG 474 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~~ 474 (1178)
.+.+|+|++=-++||.++|++|+|||||||||+.|.|=.. ..+|+|+|+|.+..+ +..++.+|||.|++ ++-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 3579999999999999999999999999999999998532 257899999987654 66788999999987 67788
Q ss_pred cHHHHHhcCC----C-CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC-CEE
Q 001041 475 SIKDNIAYGK----D-DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP-RIL 544 (1178)
Q Consensus 475 ti~~ni~~~~----~-~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~-~il 544 (1178)
||||-+.|.. | +.++ +.++++.+..++.+. -|..||.-|..||..||.|+.||=-|..|| .||
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~il 952 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRLTIGVELVANPSSIL 952 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhceeeEEEEEecCCceeE
Confidence 9999998852 1 2232 234444444444332 367799999999999999999999999999 899
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcch--hhccCEEEEEe-CCEEEEecChhH
Q 001041 545 LLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLST--VRNADMIAVIH-RGKIVEKGTHSK 606 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~--~~~~d~i~~l~-~G~i~~~g~~~~ 606 (1178)
.||||||+||++++..|.+.++++. .|+|+++.=|+++- .+..|+++.|+ +|+.++.|+..+
T Consensus 953 FLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 953 FLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred EecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 9999999999999999999999875 68999999999984 57799999996 689999998754
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-22 Score=250.22 Aligned_cols=102 Identities=31% Similarity=0.537 Sum_probs=92.9
Q ss_pred Cccc-hhcCCCCCCChHHHHHHHHHHHhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh
Q 001041 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 511 g~~t-~~~~~g~~lSgGqkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~ 585 (1178)
|++. .++....+||||||||++|||+|+++| +++||||||++||++....+.+.++++. +++|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5554 368888999999999999999999999 9999999999999999999999998875 5789999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChhHHhcCCC
Q 001041 586 NADMIAVI------HRGKIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 586 ~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 612 (1178)
.||+|++| ++|+|++.|+++++.+++.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999999 7999999999999987644
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-23 Score=221.34 Aligned_cols=184 Identities=21% Similarity=0.274 Sum_probs=133.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHh-cc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1178)
.|+++|.. +|. +..+++++++ ++++|+|||||||||++++|. .++|.+. ...| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~-----~~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRA-----SKMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCH-----HHhhhhh
Confidence 36777765 664 3458888887 899999999999999999997 2334332 1223 57
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHH-----HH-HH----HhcHHHHHHhCCCCccchhcCCCCCCChHHHHH
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIR-----VA-TE----LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~-----~~-~~----~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqr 530 (1178)
+++++|+..++. .|.++++.+.......+..+ .. .. ...+ ..+..+|++.++.+ ..||+|||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~~~~~~~----~~lS~G~~~r 135 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPKKSWKNI----SNLSGGEKTL 135 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeeccccccccch----hhcCHHHHHH
Confidence 999999987654 46777766543211111000 00 00 0111 12344566665544 4799999999
Q ss_pred HHHHHHhcc----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 531 IAIARAILK----DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 531 i~lARal~~----~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
++||||++. +|++++|||||++||+.+...+.+.++++.++.|+|+|||+.+....||+|++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999963 58999999999999999999999999988778899999999887788999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=214.96 Aligned_cols=190 Identities=28% Similarity=0.417 Sum_probs=134.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc---CCCCCCcEEECCeecCCCCHHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF---YDPQAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~---~~~~~G~i~i~g~~~~~~~~~~~r 459 (1178)
.|.++|.+.+-. ++..+.|-||.|-.|..+++|||+|-|||||++-|.-- ++|. |
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn---I---------------- 321 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN---I---------------- 321 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---C----------------
Confidence 377888777653 34588999999999999999999999999999988742 2332 1
Q ss_pred cceEEEcCCCCCCcccHHHHHhcCC-------------------CCCC-HHHHHHH---HHH-------hcHHHHHHhCC
Q 001041 460 KKIGLVSQEPVLFTGSIKDNIAYGK-------------------DDAT-TEEIRVA---TEL-------ANAAKFIDKLP 509 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~ti~~ni~~~~-------------------~~~~-~~~~~~~---~~~-------~~~~~~i~~~~ 509 (1178)
-+-+|-|+..--+.|--+-++-.. .+.+ .+++.++ ++. +.+...+..|
T Consensus 322 -DvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGL- 399 (807)
T KOG0066|consen 322 -DVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGL- 399 (807)
T ss_pred -ceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhc-
Confidence 256666665443333222222110 0000 1112111 111 1122223333
Q ss_pred CCccchhcCCCC-CCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-c
Q 001041 510 QGIDTLVGEHGT-QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-A 587 (1178)
Q Consensus 510 ~g~~t~~~~~g~-~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~ 587 (1178)
|.+-.+-++.. .+|||=|-||+|||||+..|-+|+|||||.+||-...-++-+.+..+ .+|.++|+|+-.++.. |
T Consensus 400 -GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VC 476 (807)
T KOG0066|consen 400 -GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVC 476 (807)
T ss_pred -CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHH
Confidence 66777767665 49999999999999999999999999999999999888888888776 4899999999999976 8
Q ss_pred CEEEEEeCCEEE
Q 001041 588 DMIAVIHRGKIV 599 (1178)
Q Consensus 588 d~i~~l~~G~i~ 599 (1178)
..|+.||+-++.
T Consensus 477 tdIIHLD~qkLh 488 (807)
T KOG0066|consen 477 TDIIHLDNQKLH 488 (807)
T ss_pred HHHhhhhhhhhh
Confidence 999999876654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.7e-23 Score=204.83 Aligned_cols=127 Identities=28% Similarity=0.424 Sum_probs=110.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCChHHHHHhc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQM 1121 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~-~i~l~~LR~~I 1121 (1178)
|+++||+.+|.+ ..||+|||++|++||+++|+||||||||||++.|.++-+|++|+|.|||.++. +.++..+|+++
T Consensus 3 i~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 3 IEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 899999999963 35999999999999999999999999999999999999999999999998773 34899999999
Q ss_pred cccccccccc-cccHHHHHhcCCC--CCCCHH----HHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLF-NDTIRANIAYGKG--GDATEA----EIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF-~gTIreNI~~g~~--~~asde----ei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|+|+|...|| +-|+.||+.+++- ..-+.+ .-.+.++++++.|-..+.|..|
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qL 137 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQL 137 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCcccc
Confidence 9999999999 6799999998742 122333 3455678999999999988765
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-22 Score=223.25 Aligned_cols=135 Identities=30% Similarity=0.513 Sum_probs=122.8
Q ss_pred ccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
..|.|+++||+++|+.. +.++|+|+||+|+|||.+||+|++|||||||+++|+|+++|++|+|++||.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 46789999999999742 24699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++|++|+|+|.+|++|+++|+.+.. ...+++++++++.+++++++..+|.|++|.+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~ 150 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPEC--KCTDDRLWEALEIAQLKNMVKSLPGGLDAVV 150 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCC--CCCHHHHHHHHHHhCcHHHHhhcccccCcEe
Confidence 9999999999999999999997642 2356778999999999999999999999864
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-22 Score=216.77 Aligned_cols=137 Identities=42% Similarity=0.750 Sum_probs=120.7
Q ss_pred CccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 001041 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1038 ~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L 1117 (1178)
...|.|+++|++++|+++.+.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++...+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34578999999999975322469999999999999999999999999999999999999999999999999988888888
Q ss_pred HHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
|+++++|||++.+|.+|++||+.++.. ..+.+++++.++...+++++..+|.|+++.
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~ 143 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQ-SCSFECVKEAAQKAHAHSFISELASGYDTE 143 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccC-CCCHHHHHHHHHHcCcHHHHHhccccccch
Confidence 999999999999999999999998743 345566777777788999999999888764
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-22 Score=217.36 Aligned_cols=132 Identities=42% Similarity=0.748 Sum_probs=120.5
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+|+++|++++|++ ..++|+|+||+|++||.++|+||+|||||||+++|.|++.|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 46999999999963 2359999999999999999999999999999999999999999999999999999888899999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
++++||++.+|++|++||+.++.. ...++++.++++..++.++++.+|.|+++.
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 132 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTV 132 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCC-CCCHHHHHHHHHHhChHHHHHhCcccccCH
Confidence 999999999999999999998743 456778888999999999999999998765
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-22 Score=218.14 Aligned_cols=131 Identities=39% Similarity=0.698 Sum_probs=118.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|+.+ ..++|+|+||+|++||.+||+|++|||||||+++|.|++.|++|+|++||.|+...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5799999999642 346999999999999999999999999999999999999999999999999999888888999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
++||++.+|+.|++|||.++.. ..+.+++.++++..++++++..+|.|+++.
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 131 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADP-GMSMERVIEAAKLAGAHDFISELPEGYDTI 131 (237)
T ss_pred EEcCCchhccchHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhCcccccch
Confidence 9999999999999999998643 456677888889999999999999988764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=242.53 Aligned_cols=97 Identities=34% Similarity=0.571 Sum_probs=88.4
Q ss_pred Cccc-hhcCCCCCCChHHHHHHHHHHHhcc---CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh
Q 001041 511 GIDT-LVGEHGTQLSGGQKQRIAIARAILK---DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 511 g~~t-~~~~~g~~lSgGqkqri~lARal~~---~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~ 585 (1178)
|++. .+++...+||||||||++|||+|.+ +|++|||||||++||+...+.+.+.++++. ++.|+|+|+|+++.+.
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5654 4688889999999999999999997 599999999999999999999999998875 4789999999999998
Q ss_pred ccCEEEEE------eCCEEEEecChhHH
Q 001041 586 NADMIAVI------HRGKIVEKGTHSKL 607 (1178)
Q Consensus 586 ~~d~i~~l------~~G~i~~~g~~~~l 607 (1178)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999876
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-18 Score=194.81 Aligned_cols=269 Identities=19% Similarity=0.319 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 62 IIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGL 141 (1178)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~ 141 (1178)
++++++.++.++..+..|++++.+++........ ...........++++.++...+.....+...+.+.+...++|.+
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD--NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKR 79 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777788899998875433222 11112222222222333334444444444567788999999999
Q ss_pred HHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 001041 142 YLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSG 221 (1178)
Q Consensus 142 ~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 221 (1178)
+++++++.|..+|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++..|+..++.
T Consensus 80 ~~~~~~~~~~~~~~~~-~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~ 158 (275)
T PF00664_consen 80 LFEKLLRLPYSYFDKN-SSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLIS 158 (275)
T ss_dssp HHHHHHHSHHHHHHHS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhh-cccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhh
Confidence 9999999999999974 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 222 GVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCS 301 (1178)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1178)
..+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+.....++.......+....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 159 FIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988888888888777777777777777
Q ss_pred HHHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHH
Q 001041 302 YALSVWYGGKL-ILEEGYNGGQVVNVMVAVLTG 333 (1178)
Q Consensus 302 ~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~ 333 (1178)
.++.+++|..+ +..+.++.|.++.++.+....
T Consensus 239 ~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~ 271 (275)
T PF00664_consen 239 IVLILIFGAYLSVINGQISIGTLVAFLSLSSQL 271 (275)
T ss_dssp HHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHH
Confidence 77888889988 889999999887766555443
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-21 Score=214.39 Aligned_cols=214 Identities=22% Similarity=0.410 Sum_probs=173.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeec-CCCCHHHHh-
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL-KEFQLQWIR- 459 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~-~~~~~~~~r- 459 (1178)
..++++|++..-+ + +.+.++++||++++||+++|.|-.|-|-+-|+.+|.|+..|.+|+|.++|+|+ ...+....|
T Consensus 256 ~vL~V~~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~ 333 (501)
T COG3845 256 VVLEVEDLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRR 333 (501)
T ss_pred eEEEEeeeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHh
Confidence 4589999998743 2 34689999999999999999999999999999999999999999999999997 667777666
Q ss_pred cceEEEcCCCC----CCcccHHHHHhcCCCC---------CCHHHHHHHHHHhcHHHHHHhC---CCCccchhcCCCCCC
Q 001041 460 KKIGLVSQEPV----LFTGSIKDNIAYGKDD---------ATTEEIRVATELANAAKFIDKL---PQGIDTLVGEHGTQL 523 (1178)
Q Consensus 460 ~~i~~v~Q~~~----l~~~ti~~ni~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~---~~g~~t~~~~~g~~l 523 (1178)
..++|||.|.+ ....|+.||+.++.-. .+..++.... .+.++.+ +.+.++. ..+|
T Consensus 334 ~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~fdVr~~~~~~~----a~~L 404 (501)
T COG3845 334 LGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEEFDVRAPSPDAP----ARSL 404 (501)
T ss_pred cCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHHcCccCCCCCcc----hhhc
Confidence 56999999984 5678999999986432 1122332222 2233333 2333333 3579
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEe
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEK 601 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~ 601 (1178)
|||+.||+-+||-+.++|++||...||-+||..+...|.+.|.+.. +|+.|++|+-+++.+- .||||.||.+|+|+..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999999988887665 6889999999999875 5999999999999987
Q ss_pred cChhH
Q 001041 602 GTHSK 606 (1178)
Q Consensus 602 g~~~~ 606 (1178)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 76654
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-22 Score=218.87 Aligned_cols=126 Identities=27% Similarity=0.461 Sum_probs=113.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+.+|.+. .||+||||+|+.||.++|||||||||||++++|+||.+|++|+|+|||.|++++++++ |.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999632 2999999999999999999999999999999999999999999999999999999876 899
Q ss_pred ccccccccccc-ccHHHHHhcCCCC-----CCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLFN-DTIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~~-----~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|+|+.-||. .|++|||+|+... +--++++.++++.-++.+.+++.|..+
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 99999999995 5999999998431 123667899999999999999998765
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=215.03 Aligned_cols=131 Identities=44% Similarity=0.713 Sum_probs=120.0
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ +.++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 578999999963 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++||++.+|++|++||+.++.. ..+++++.++++..++.+.+..+|.|+++.+
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 131 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIV 131 (236)
T ss_pred EECCCChhhcchHHHHHhhcCC-CCCHHHHHHHHHHcCcHHHHHhccccccchh
Confidence 9999999999999999998743 4677888899999999999999999988753
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=215.10 Aligned_cols=132 Identities=61% Similarity=0.989 Sum_probs=118.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++|++++|++..+.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 57899999997432346999999999999999999999999999999999999999999999999998888888889999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
++||++.+|+.|++||+.++.. ..+.+++.++++..++.+++..+|.|+++.
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 132 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKP-DATDEEVEEAAKKANIHDFIMSLPDGYDTL 132 (238)
T ss_pred EECCchhhhhhhHHHHhhccCC-CCCHHHHHHHHHHcChHHHHHhhcccccee
Confidence 9999999999999999998743 446677888888889999999999988764
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-21 Score=210.94 Aligned_cols=134 Identities=37% Similarity=0.659 Sum_probs=120.5
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+|+++|++++|+++ ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.++|.++..++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 469999999999642 2469999999999999999999999999999999999999999999999999988888888999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++++||++.+|..|++||+.++.. ..+.+++.++++..++.+.+.++|.|++|.+
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~ 134 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAP-LADDERILRAAELAGVTDFVNKHPNGLDLQI 134 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCC-CCCHHHHHHHHHHcCcHHHHHhcccccccee
Confidence 999999999999999999988642 3456778889999999999999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-21 Score=209.81 Aligned_cols=190 Identities=31% Similarity=0.446 Sum_probs=147.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.+-++||+|.||+ .+|.+++++|-|.--..++||||+|.|||||+++|.|.++|++|+.+-+- |-+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4678999999986 45899999999999999999999999999999999999999999876543 4479
Q ss_pred EEEcCCCC--C-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPV--L-FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~--l-~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|+..|+.- | ...|-.|-+.-++ +...++.+.++...++..- -+|. ....||||||.|++||-..++
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeLal~ 721 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAELALG 721 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHHhcC
Confidence 99988762 2 2345555554322 3445555555555444321 1222 235799999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCE-EEEEeCCEE
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADM-IAVIHRGKI 598 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~-i~~l~~G~i 598 (1178)
.||||||||||.+||.++...+-++|.++ +..||+|+|+-..+...|. .+|+++-.|
T Consensus 722 ~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 722 GPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred CCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCCh
Confidence 99999999999999999999999999887 3579999999998877554 344454433
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-22 Score=218.31 Aligned_cols=183 Identities=18% Similarity=0.174 Sum_probs=129.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee-c------CCCCHHHHhcceEEEcCCCC--CCcccHHHHHh--
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN-L------KEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIA-- 481 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~-~------~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~ni~-- 481 (1178)
.+++|+||||||||||+.+|.+.+.+..|++..++.+ + ...+.....-.+.+..|++. ++..+++++-.
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999988777777654321 1 01111122334556556542 34444444321
Q ss_pred -cCCCCCCHHHHHHHHHHhcHHHHHHh--CCCCccchhcC---------CCCCCChHHHHHHHHHHHhcc----CCCEEE
Q 001041 482 -YGKDDATTEEIRVATELANAAKFIDK--LPQGIDTLVGE---------HGTQLSGGQKQRIAIARAILK----DPRILL 545 (1178)
Q Consensus 482 -~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~g~~t~~~~---------~g~~lSgGqkqri~lARal~~----~~~ill 545 (1178)
+.....+.+++.+.++.+++..+... +++|.-+.+.+ ...+||||||||++||||++. +|+++|
T Consensus 103 ~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~ll 182 (247)
T cd03275 103 RINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFV 182 (247)
T ss_pred EECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEE
Confidence 11223556777777777776422111 23343333322 236899999999999999975 489999
Q ss_pred EeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhccCEEEEEeC
Q 001041 546 LDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 546 lDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
|||||++||+.....+.+.++++.+ +.|+|+|||+.+.+..||++++|..
T Consensus 183 lDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 183 LDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 9999999999999999999988765 7899999999998889999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=212.96 Aligned_cols=131 Identities=50% Similarity=0.819 Sum_probs=118.6
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++|++++|++. +.++|+|+||++++||.+||+|++|||||||+++|.|++.|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999643 236999999999999999999999999999999999999999999999999999888889999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
++||++.+|+.|++||+.++.. ..+.+++.++++..++++++..+|.|+++.
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 131 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRP-GATREEVEEAARAANAHEFIMELPEGYDTV 131 (234)
T ss_pred EeCCCCeeccccHHHHhhccCC-CCCHHHHHHHHHHcCcHHHHHhcccCccee
Confidence 9999999999999999998743 456677888889999999999999888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=217.16 Aligned_cols=126 Identities=29% Similarity=0.524 Sum_probs=112.6
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+|+||+-+|. +..+|+||||+|++||.++++|||||||||++++|+||.+|++|+|.|||.||.+++.+ +|.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 34699999999999999999999999999999999999999999999999999998876 6899
Q ss_pred cccccccccc-cccHHHHHhcCCC--CCCCH----HHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLF-NDTIRANIAYGKG--GDATE----AEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF-~gTIreNI~~g~~--~~asd----eei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|+|+--|| +-||+|||+||.. ....+ +.+.++++.+++.+|-.+.|..+
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qL 137 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhh
Confidence 9999999999 7899999999953 11232 36899999999999988887654
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-21 Score=206.41 Aligned_cols=130 Identities=27% Similarity=0.433 Sum_probs=110.0
Q ss_pred EEEeeeEEeCCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHH
Q 001041 1043 IELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWL 1117 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~--~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~---l~~L 1117 (1178)
|+|+|||..|+.. ....+|+||||+|++||..||||+||||||||++++-|+-+|++|+|.+||+|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 8999999999852 1235999999999999999999999999999999999999999999999998887776 5556
Q ss_pred HHhcccccccccccc-ccHHHHHhcCCC-CCCCHH----HHHHHHHHcCchHHHhhccccc
Q 001041 1118 RQQMGLVSQEPVLFN-DTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~asde----ei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|++|+|++.|++ .|+.+|++|.-. ...+.+ .+.+.++.+++.|.-.+-|..|
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qL 142 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQL 142 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhc
Confidence 789999999999997 999999998421 123343 4677899999999888877554
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-21 Score=214.11 Aligned_cols=194 Identities=27% Similarity=0.368 Sum_probs=161.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
.-+++.+|+|.|+.. +.+.+.++++.++.-+++++||++|+||||+++++.+...|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 358999999999643 23799999999999999999999999999999999999999999998887 678
Q ss_pred eEEEcCCCCCC-cccH--HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCC-CCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVLF-TGSI--KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEH-GTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti--~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~-g~~lSgGqkqri~lARal 537 (1178)
|+|-.|...=+ +-.+ -|-..=..|..+++++++.|...++...+ .-. ...||||||-|+++|-+.
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~l-----------a~~si~~LSGGQKsrvafA~~~ 497 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGEL-----------ALQSIASLSGGQKSRVAFAACT 497 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchh-----------hhccccccCCcchhHHHHHHHh
Confidence 99999987422 2222 22222123455789999988877655444 222 256999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
+.+|.+|+|||||..||.++-..+-++|+.. +..||+|||+.+++.. |+.+.+.++|++..
T Consensus 498 ~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 498 WNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999998888899876 3579999999999986 99999999999985
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-19 Score=199.67 Aligned_cols=341 Identities=13% Similarity=0.118 Sum_probs=219.3
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001041 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFT-ASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1178)
Q Consensus 824 ~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~-~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1178)
.|+++|++..-..+......++...+.++....-++. ..|.-...++..+.+..++...+++.+.+...+.++..++..
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 4899999888887777766666666655554444443 345544555555555566666666666666777777777777
Q ss_pred HHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH----hcCCCC
Q 001041 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLV----EDGKAT 978 (1178)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~----~~g~~t 978 (1178)
-.-++...+.+.|.-|+.++.+..+-+...++..+...+.....-...-+..++-++..++...+.+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 6677788888899999998877766555555544433222211111111111222222222211111111 233556
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCC-------------CC-------CCCCC
Q 001041 979 FSDVFKVFFS----LTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKID-------------PS-------DESGT 1034 (1178)
Q Consensus 979 ~g~l~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~-------------~~-------~~~~~ 1034 (1178)
..++...+.. ...+...++.+.....++.+......|+.++.+.-.+.. .+ .++..
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 6666554432 223344455555555566666666777776654211110 00 00001
Q ss_pred cccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE--CCcccCCC
Q 001041 1035 ILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL--DGVEIQKL 1112 (1178)
Q Consensus 1035 ~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I--DG~dI~~i 1112 (1178)
...+..-.|+|++|++.=|++ +....+|+||+|+.|+.+-|+||||||||+|++.|.++|+..+|+|.- ||-+
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~---- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP---- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC----
Confidence 111223469999999999875 434667899999999999999999999999999999999999999875 4433
Q ss_pred ChHHHHHhccccccccccccccHHHHHhcC------CCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1113 QLKWLRQQMGLVSQEPVLFNDTIRANIAYG------KGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1113 ~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g------~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+.+=+|||-|++=.||+||-+-|- ....++|++|.+-++.+++.+.++. .+|+|+++
T Consensus 501 ------~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~ 563 (659)
T KOG0060|consen 501 ------KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQV 563 (659)
T ss_pred ------CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchh
Confidence 346899999999999999999873 1135899999999999999887766 48898764
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=206.74 Aligned_cols=119 Identities=30% Similarity=0.451 Sum_probs=106.8
Q ss_pred EEEeeeEEeCCCCCC--ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1043 IELHHVSFKYPSRPD--VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~--~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+++||+++|++..+ +++|+|+||+|++||.++|+|++|||||||+++|+|+++|++|+|++|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 579999999964311 3699999999999999999999999999999999999999999999999 6
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|++||+.++. ..++++++++++.+++.+++..+|.|++|.+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 121 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGK--PFDEERYEKVIKACALEPDLEILPDGDLTEI 121 (204)
T ss_pred EEEEecCchhccCcHHHHhccCC--CcCHHHHHHHHHHcCcHHHHHhccCccccee
Confidence 99999999999999999999863 3456778899999999999999999988754
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-21 Score=195.59 Aligned_cols=123 Identities=34% Similarity=0.534 Sum_probs=107.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLR 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~---l~~LR 1118 (1178)
-|+++||+-.||+ ++.+|+||||+|++||.|||||+||||||||++.|.|+.||++|+|.++|.++..++ +..+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 457999999999999999999999999999999999999999999999999999988 77788
Q ss_pred Hhcccccccccccc-ccHHHHHhcCCCCC----------CC---HHHHHHHHHHcCchHHHh
Q 001041 1119 QQMGLVSQEPVLFN-DTIRANIAYGKGGD----------AT---EAEIQAASEMANAHKFIC 1166 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~~~----------as---deei~~Al~~A~~~dfI~ 1166 (1178)
++||+|+|++-|-. -|+.+|+..|+.+. .+ ..+..+|++..++.|+.-
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~ 142 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAY 142 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHH
Confidence 99999999999875 58999998775321 22 345678899999988763
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=205.92 Aligned_cols=122 Identities=28% Similarity=0.475 Sum_probs=110.0
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
++.+|++|+|+ ++++|+|+||+|++||.++|+||+|||||||+++|.|+..|.+|+|++||.||.+++..++-++++
T Consensus 3 L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia 79 (258)
T COG1120 3 LEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLA 79 (258)
T ss_pred eEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEE
Confidence 78999999996 346999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc-ccccccHHHHHhcCCCCC---------CCHHHHHHHHHHcCchHHHhh
Q 001041 1123 LVSQEP-VLFNDTIRANIAYGKGGD---------ATEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1123 iV~Qdp-~LF~gTIreNI~~g~~~~---------asdeei~~Al~~A~~~dfI~~ 1167 (1178)
||||++ .-|.-|++|=+.+|+.+. .+++.+.+|++..++.+|..+
T Consensus 80 ~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r 134 (258)
T COG1120 80 YVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR 134 (258)
T ss_pred EeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC
Confidence 999996 568889999999997541 123358889999999998765
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-21 Score=187.51 Aligned_cols=226 Identities=24% Similarity=0.371 Sum_probs=172.7
Q ss_pred EEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC----CCCcEEECCeecCCCCHHHHh
Q 001041 385 ELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP----QAGEVLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 385 ~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~----~~G~i~i~g~~~~~~~~~~~r 459 (1178)
.++|++..+.... ...+++++|+++..||+-++||+||||||-+.++|+|...- +.-+..+|++|+-.+++...|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 3455555443221 24588999999999999999999999999999999997643 455678899999999988877
Q ss_pred c----ceEEEcCCCCCC---ccc----HHHHHhcCCCCC---------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCC
Q 001041 460 K----KIGLVSQEPVLF---TGS----IKDNIAYGKDDA---------TTEEIRVATELANAAKFIDKLPQGIDTLVGEH 519 (1178)
Q Consensus 460 ~----~i~~v~Q~~~l~---~~t----i~~ni~~~~~~~---------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~ 519 (1178)
+ .|++++|+|.-+ +.+ +-+||-+- ... ...+..+.+..++++|- .......
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~w-TfkgrWWq~F~WrKrrAIeLLHrVGIKdH--------kDIM~SY 155 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAW-TYKGRWWQRFGWRKRRAIELLHRVGIKDH--------KDIMRSY 155 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccc-cccchHhhhhchhHHHHHHHHHHhccccH--------HHHHHhC
Confidence 4 688999999754 223 34455321 110 12233344445554331 0112344
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 520 GTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 520 g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
...|--|+-|++.||-|+..+|++||-||||.++|+.|..+|++.+..+. ++.|+++++|++..+.. ||+|-||.-|
T Consensus 156 P~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCG 235 (330)
T COG4170 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCG 235 (330)
T ss_pred cchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEec
Confidence 45678899999999999999999999999999999999999999987765 46788999999999976 9999999999
Q ss_pred EEEEecChhHHhcCCCchHHHHH
Q 001041 597 KIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+-+|.++.+++++.+...|.+-.
T Consensus 236 Q~~ESa~~e~l~~~PhHPYTqAL 258 (330)
T COG4170 236 QTVESAPSEELVTMPHHPYTQAL 258 (330)
T ss_pred ccccccchhHHhcCCCCchHHHH
Confidence 99999999999999888887643
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-21 Score=214.85 Aligned_cols=131 Identities=24% Similarity=0.480 Sum_probs=112.2
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999632123599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|||+| .++..|++|||.++... ..+ ++++.++++..++.++..+.|..|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 9999998 46778999999986321 122 356788999999999887776543
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.5e-21 Score=204.70 Aligned_cols=127 Identities=34% Similarity=0.603 Sum_probs=113.2
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCChHHHHHh
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQLKWLRQQ 1120 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~-~i~l~~LR~~ 1120 (1178)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.+++.|++|.|.+||.|++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48999999999855 57999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred cccccccc--ccccccHHHHHhcCCCC-CCCHHH----HHHHHHHcCchHHHhhccc
Q 001041 1121 MGLVSQEP--VLFNDTIRANIAYGKGG-DATEAE----IQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1121 IsiV~Qdp--~LF~gTIreNI~~g~~~-~asdee----i~~Al~~A~~~dfI~~LP~ 1170 (1178)
+++|+|+| .+|..||.|.++||+.+ ..+.+| +.+|++.++++++-..-|.
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~ 137 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPF 137 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcc
Confidence 99999999 89999999999999542 244444 6778999999887666554
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-21 Score=207.46 Aligned_cols=127 Identities=32% Similarity=0.590 Sum_probs=109.1
Q ss_pred cccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
.+.|+++|++++|+.. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4679999999999742 236999999999999999999999999999999999999999999999999999999989999
Q ss_pred hccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|++|||+|.+|++|+++||.+.. ..+++++.++++ ++..+..|+.|-
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~--~~~~~~~~~~l~---~~~~~~~LS~G~ 130 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR---VSEGGLNLSQGQ 130 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccC--CCCHHHHHHHhh---ccCCCCcCCHHH
Confidence 999999999999999999998753 356677777776 344445555543
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-21 Score=207.74 Aligned_cols=128 Identities=30% Similarity=0.483 Sum_probs=108.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1178)
|+++||+++|++. ..++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 7899999999632 23699999999999999999999999999999999999999999999999999877543 4788
Q ss_pred hcccccccccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcCchHHHhhcccc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~-----~~~asdeei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++++|||++.+|. .|++||+.++. .....++++.++++..++.++..+.|..
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999999986 59999998741 1112356788999999998887666543
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-21 Score=217.95 Aligned_cols=130 Identities=21% Similarity=0.357 Sum_probs=109.9
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR 1118 (1178)
|+|+||+++|+++. ..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 79999999996321 246999999999999999999999999999999999999999999999999999887655 57
Q ss_pred Hhcccccccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|++|||++.||. .|++||++++.. ...+ ++++.++++..++.++..+.|..|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~L 141 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNL 141 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 89999999999995 799999997521 1122 345788999999988887766544
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-21 Score=186.23 Aligned_cols=123 Identities=29% Similarity=0.485 Sum_probs=108.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|.+++|.|+|..-+ =.++++|++||+|||+||||||||||++|+.||..|++|+|+|+|+|....++. ++-+|
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56889999996432 367999999999999999999999999999999999999999999999887764 57899
Q ss_pred ccccccccc-cccHHHHHhcCCCCC-----CCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~-----asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+++||..|| +=||++||.+|..|. ...+.+..|+.++++.+|..+||..+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 999999999 569999999996542 23567899999999999999999765
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-21 Score=194.80 Aligned_cols=125 Identities=28% Similarity=0.452 Sum_probs=105.2
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~---~LR 1118 (1178)
-|++++|+++|.+ +.||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+|+|.||.+++-+ .+|
T Consensus 8 ~I~vr~v~~~fG~---~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGD---RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCC---EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999999764 569
Q ss_pred Hhccccccccccccc-cHHHHHhcCCC--CCCCHHHHHH----HHHHcCchHH-Hhhcc
Q 001041 1119 QQMGLVSQEPVLFND-TIRANIAYGKG--GDATEAEIQA----ASEMANAHKF-ICSLQ 1169 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~~--~~asdeei~~----Al~~A~~~df-I~~LP 1169 (1178)
+++|+++|.--||+. ||+||+.|--. ...+++++++ -++.+++..- -+.+|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P 143 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP 143 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc
Confidence 999999999999965 99999987311 1345555544 5677888776 34444
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-21 Score=211.78 Aligned_cols=129 Identities=29% Similarity=0.521 Sum_probs=112.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|+. +.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.+.+...+|++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 23599999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|||+| .+|..|+++||.++... ..+ ++++.++++..++.++..+.|..|
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 139 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHL 139 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhC
Confidence 9999998 68899999999986321 122 356788899999988887776543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.7e-21 Score=197.15 Aligned_cols=123 Identities=28% Similarity=0.419 Sum_probs=107.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.+++++|+.+|.+ ..||+||||+|++||.|+||||||||||||++++.||.+|++|+|.+||.++.... ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4899999999964 46999999999999999999999999999999999999999999999999985543 568
Q ss_pred ccccccccccc-ccHHHHHhcCCCCC-----CCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLFN-DTIRANIAYGKGGD-----ATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~~~-----asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+||+|++.||. -|++||+.+|.... -..+.+.++++.+++.+|-.+.|..+
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qL 131 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQL 131 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcccc
Confidence 99999999995 79999999874211 12446888999999999999988765
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=202.89 Aligned_cols=129 Identities=19% Similarity=0.317 Sum_probs=113.1
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHHHH
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWLRQ 1119 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l----~~LR~ 1119 (1178)
.+.|+.|+|+.+ .++|+|+||+|++||.++|+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 467899999743 469999999999999999999999999999999999999999999999999877653 34677
Q ss_pred hccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
.+++++|+|.+|+.|++|||.++. ..++++..++++..++.+++..+|.|++|.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 134 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGS--PFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcC--cCCHHHHHHHHHHhCcHHHHHhCcCccccCc
Confidence 899999999999999999999863 3456778889999999999999999987753
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-20 Score=201.34 Aligned_cols=178 Identities=24% Similarity=0.458 Sum_probs=135.0
Q ss_pred EEECCCCCCCccccceeEEE-----eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 390 YFSYPARPNEQIFSGFSISI-----SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 390 ~~~y~~~~~~~~l~~i~l~i-----~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
-+.|++- ...+.+..|++ ..||+++++||+|-||||++++|.|.++|++|. ..+ -+|+|
T Consensus 342 lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~-------------~~vSy 405 (591)
T COG1245 342 LVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EED-------------LKVSY 405 (591)
T ss_pred eeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Ccc-------------ceEee
Confidence 3455432 23455666655 457899999999999999999999999999998 211 17999
Q ss_pred EcCCC-CCCcccHHHHHhcCCCC-CCHHHHH-HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 465 VSQEP-VLFTGSIKDNIAYGKDD-ATTEEIR-VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 465 v~Q~~-~l~~~ti~~ni~~~~~~-~~~~~~~-~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
=||-- .-++|||++-+.-..+. .....++ +.++ |-.++..+.....+||||+.||+|+|-||.+++
T Consensus 406 KPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~-----------pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reA 474 (591)
T COG1245 406 KPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVK-----------PLNLEDLLERPVDELSGGELQRVAIAAALSREA 474 (591)
T ss_pred cceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcC-----------ccchHHHHhcccccCCchhHHHHHHHHHhcccc
Confidence 99953 24899999987633222 1222221 1111 334555566667789999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEe
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1178)
|++|||||+|.||.+..-.+-+.|++.. .++|.++|-|++..+.. +||++|.+
T Consensus 475 DlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 475 DLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred CEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 9999999999999998877777887754 46899999999999886 89999986
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-20 Score=213.03 Aligned_cols=126 Identities=21% Similarity=0.354 Sum_probs=103.1
Q ss_pred cEEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC-------
Q 001041 1042 EIELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------- 1112 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i------- 1112 (1178)
-|+++||+|+|++.. +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 499999999996421 23699999999999999999999999999999999999999999999999999753
Q ss_pred ---------ChHHHHHhcccccccc--ccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCch-HHHhh
Q 001041 1113 ---------QLKWLRQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAH-KFICS 1167 (1178)
Q Consensus 1113 ---------~l~~LR~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~asde----ei~~Al~~A~~~-dfI~~ 1167 (1178)
+...+|++|++|+|+| .+|++|++|||.++.. ...+++ .+.++++..++. ++..+
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 172 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER 172 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 4567899999999998 7999999999998732 123333 345566667774 44443
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-20 Score=195.78 Aligned_cols=172 Identities=19% Similarity=0.213 Sum_probs=117.8
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC-CHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF-QLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~-~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
++++++++.+| +.+|+||||||||||+.+|.-.+..... ....|....++ ....-...|.+.+|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 45677777777 8899999999999999998754322211 00112111000 00011346888888765444 2
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHH
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal----~~~~~illlDe~ts~lD~~ 556 (1178)
+ ..... ...+.++++. .....+...+||+|||||++||||+ +.+|+++||||||++||+.
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~ 147 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMV 147 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHH
Confidence 1 11111 1122333433 2223456678999999999999999 6899999999999999999
Q ss_pred hHHHHHHHHHHHhc----CCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 557 SEKVVQEALDRIMV----NRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 557 ~~~~i~~~i~~~~~----~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
+...+.+.|.+..+ ++|++++||+++.+...|+|-+|..++
T Consensus 148 ~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 148 NRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 99999998887643 258899999999999999999998653
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=207.18 Aligned_cols=123 Identities=27% Similarity=0.434 Sum_probs=106.4
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCCeEEECCcccCCCChHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD---PDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~---p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
.|+++||+++|++ +++|+|+||+|++||.+||+|++|||||||+++|+|+++ |++|+|.+||.|+.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3889999999963 359999999999999999999999999999999999985 6899999999999998888899
Q ss_pred HhccccccccccccccHHHHHhcCCC-------CCCCHHHHHHHHHHcCchHHHhh
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKG-------GDATEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~-------~~asdeei~~Al~~A~~~dfI~~ 1167 (1178)
++|+++||+|.+|+.|++||+.++.. ....++++.++++..++++++..
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 134 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD 134 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH
Confidence 99999999999999999999987521 01233467888999999765543
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-20 Score=205.76 Aligned_cols=125 Identities=28% Similarity=0.457 Sum_probs=105.7
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1178)
|+++||+++|++ .++|+|+||+|++||++||+||+|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 359999999999999999999999999999999999999999999999999988764 57889
Q ss_pred hccccccccccccc-cHHHHHhcCCC--CCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1120 QMGLVSQEPVLFND-TIRANIAYGKG--GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~--~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|++|||++.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA 135 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 99999999999986 99999987521 1122 3456778888888777665443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-20 Score=204.93 Aligned_cols=128 Identities=24% Similarity=0.369 Sum_probs=106.1
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR 1118 (1178)
|+++||+++|+++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|++||+|+.+++... +|
T Consensus 6 l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~ 85 (233)
T PRK11629 6 LQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELR 85 (233)
T ss_pred EEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHH
Confidence 89999999997421 146999999999999999999999999999999999999999999999999999887654 33
Q ss_pred -Hhccccccccccccc-cHHHHHhcCC-----CCCCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1119 -QQMGLVSQEPVLFND-TIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1119 -~~IsiV~Qdp~LF~g-TIreNI~~g~-----~~~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+.+++|||++.+|.+ |++||+.++. .....++++.++++..++.++..+.|.
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 86 NQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred hccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 679999999999975 9999998631 111123467888999998877655443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-20 Score=209.40 Aligned_cols=129 Identities=29% Similarity=0.524 Sum_probs=111.9
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++. .+++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.|+
T Consensus 6 l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 8999999999642 346999999999999999999999999999999999999999999999999999888888999999
Q ss_pred cccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||+| .+++.|++|||.++... ..+ ++++.++++..++.+++...|..+
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 999998 56788999999875211 122 345788899999999998877654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=204.68 Aligned_cols=123 Identities=34% Similarity=0.544 Sum_probs=106.3
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc-----CCCCCeEEECCcccCCCC--hH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY-----DPDAGHITLDGVEIQKLQ--LK 1115 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y-----~p~~G~I~IDG~dI~~i~--l~ 1115 (1178)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|++ +|++|+|.+||.++.+++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999963 35999999999999999999999999999999999999 999999999999998877 67
Q ss_pred HHHHhccccccccccccccHHHHHhcCCCC-CC-----CHHHHHHHHHHcCchHHHhhc
Q 001041 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGG-DA-----TEAEIQAASEMANAHKFICSL 1168 (1178)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~-~a-----sdeei~~Al~~A~~~dfI~~L 1168 (1178)
.+|+++++|||++.+|..|++||+.++... .. .++++.++++..++.+.+.+.
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 788999999999999999999999875210 11 245678889999998776554
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-20 Score=201.64 Aligned_cols=126 Identities=25% Similarity=0.497 Sum_probs=104.9
Q ss_pred EEEeeeEEeCCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~-~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
|+++||+++|++... .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 789999999974311 169999999999999999999999999999999999999999999999999976 456788999
Q ss_pred cccccccccccc-cHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKG-----GDATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-----~~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
+++||+|.+|.+ |++||+.+... ....++++.++++..++.++..+.+
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 134 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRV 134 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhh
Confidence 999999999985 99999976311 0112456788899999877665433
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-20 Score=204.24 Aligned_cols=123 Identities=32% Similarity=0.623 Sum_probs=107.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.|+..++...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999988888899999
Q ss_pred cccccccccccccHHHHHhcCCC-CCCCHHHHHHHHHHcCch-HHHhh
Q 001041 1122 GLVSQEPVLFNDTIRANIAYGKG-GDATEAEIQAASEMANAH-KFICS 1167 (1178)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~~-~~asdeei~~Al~~A~~~-dfI~~ 1167 (1178)
+++||++.+|+.|++||+.++.. ....++++.++++..++. ++..+
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 127 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATR 127 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhC
Confidence 99999999999999999987632 122345778888888884 45444
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-20 Score=201.44 Aligned_cols=126 Identities=29% Similarity=0.481 Sum_probs=107.3
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~---~LR~ 1119 (1178)
|+++|++++|++ +.++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.|+.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 789999999952 24699999999999999999999999999999999999999999999999999887643 4788
Q ss_pred hcccccccccccc-ccHHHHHhcCC-----CCCCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGK-----GGDATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~-----~~~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+++++||+|.+|. .|++||+.++. .+...+++++++++..++.++..+.|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE 136 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 9999999999995 69999998741 111235678899999999887766554
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.3e-20 Score=209.49 Aligned_cols=127 Identities=27% Similarity=0.474 Sum_probs=104.2
Q ss_pred EEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC----ChHH
Q 001041 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKW 1116 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i----~l~~ 1116 (1178)
|+++||+++|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 89999999996322 13699999999999999999999999999999999999999999999999999764 3467
Q ss_pred HHHhcccccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCch-HHHhhcc
Q 001041 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAH-KFICSLQ 1169 (1178)
Q Consensus 1117 LR~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~-dfI~~LP 1169 (1178)
+|++|++|||+| .+|..|++|||.++... ..+ ++.+.++++..++. ++..+.|
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 143 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP 143 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCc
Confidence 899999999998 68999999999986321 123 34456777778875 4544433
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-20 Score=210.39 Aligned_cols=128 Identities=27% Similarity=0.496 Sum_probs=105.1
Q ss_pred EEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----CChHH
Q 001041 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKW 1116 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~----i~l~~ 1116 (1178)
|+|+||+|+|+... .+++|+||||+|++||++||+|++|||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999996321 1259999999999999999999999999999999999999999999999999963 34667
Q ss_pred HHHhcccccccc--ccccccHHHHHhcCCCC-CCC----HHHHHHHHHHcCch-HHHhhccc
Q 001041 1117 LRQQMGLVSQEP--VLFNDTIRANIAYGKGG-DAT----EAEIQAASEMANAH-KFICSLQQ 1170 (1178)
Q Consensus 1117 LR~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~as----deei~~Al~~A~~~-dfI~~LP~ 1170 (1178)
+|+++++|+|+| .+|..|+.|||.|++.. ..+ ++++.++++..++. ++..+.|.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 899999999998 79999999999987421 122 23467778888884 56554443
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-20 Score=209.07 Aligned_cols=125 Identities=30% Similarity=0.560 Sum_probs=104.4
Q ss_pred EEEeeeEEeCCCCC--CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC--hHHHH
Q 001041 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ--LKWLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~--~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~--l~~LR 1118 (1178)
|+++||+++|+... ..++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 89999999997421 136999999999999999999999999999999999999999999999999998754 45789
Q ss_pred Hhcccccccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCch--HHHhh
Q 001041 1119 QQMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAH--KFICS 1167 (1178)
Q Consensus 1119 ~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~asd----eei~~Al~~A~~~--dfI~~ 1167 (1178)
++|+||||+| .+|+.|++|||.++.. ...+. +++.++++..++. ++...
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~ 140 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDK 140 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccC
Confidence 9999999998 5889999999988631 12233 3567888888886 44443
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=200.24 Aligned_cols=124 Identities=27% Similarity=0.458 Sum_probs=105.2
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccc
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1178)
+++||+++|++. .++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.. ...|++|++
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999631 469999999999999999999999999999999999999999999999999864 467789999
Q ss_pred ccccc--ccccccHHHHHhcCCCC-CCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1124 VSQEP--VLFNDTIRANIAYGKGG-DATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1124 V~Qdp--~LF~gTIreNI~~g~~~-~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|||+| .+|+.|++||+.++... ...++++.++++..++.++..+.|..|
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 99998 47889999999875321 123457899999999998887766544
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-20 Score=207.49 Aligned_cols=129 Identities=29% Similarity=0.572 Sum_probs=109.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++|++++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 34699999999999999999999999999999999999999999999999999888888899999
Q ss_pred ccccccc--ccccccHHHHHhcCCCC-CCCHH----HHHHHHHHcCchHHHhhcccc
Q 001041 1122 GLVSQEP--VLFNDTIRANIAYGKGG-DATEA----EIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~~-~asde----ei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++|||+| .+++.|++|||.++... ..+.+ .+.++++..++.++..+.|..
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQN 142 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCccc
Confidence 9999998 46678999999875211 12333 367788889998888776543
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=200.72 Aligned_cols=128 Identities=29% Similarity=0.450 Sum_probs=106.9
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1178)
|+++||+++|+++ +++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+.+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 5789999999632 359999999999999999999999999999999999999999999999999987754 35788
Q ss_pred hcccccccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHhhccccc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~-~~a----sdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
.+++|||++.+|. .|++||+.++.. ... .++++.++++..++.+...+.|..+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAEL 137 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhc
Confidence 9999999999998 599999987521 011 2346788899989988776655443
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-20 Score=201.95 Aligned_cols=127 Identities=31% Similarity=0.417 Sum_probs=105.0
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH----H
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW----L 1117 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~----L 1117 (1178)
|+++||+++|++.. ..++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.+++... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996321 146999999999999999999999999999999999999999999999999998877433 4
Q ss_pred HHhccccccccccccc-cHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHhhcc
Q 001041 1118 RQQMGLVSQEPVLFND-TIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~a----sdeei~~Al~~A~~~dfI~~LP 1169 (1178)
|+++++|||++.+|.+ |++||+.++.. ... .++++.++++..++.++..+.|
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 138 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYP 138 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcCh
Confidence 6789999999999986 99999987521 111 2456788899988877665544
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.2e-20 Score=206.55 Aligned_cols=130 Identities=25% Similarity=0.456 Sum_probs=110.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|+.....++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743234599999999999999999999999999999999999999999999999999988888899999
Q ss_pred ccccccc--ccccccHHHHHhcCCC-CCCCHH----HHHHHHHHcCchHHHhhcccc
Q 001041 1122 GLVSQEP--VLFNDTIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1122 siV~Qdp--~LF~gTIreNI~~g~~-~~asde----ei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++|||+| .++..|+.|||.++.. ...+++ ++.++++..++.++..+.|..
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPAR 140 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCccc
Confidence 9999998 4778999999987521 123333 457788888998887765543
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-20 Score=199.75 Aligned_cols=122 Identities=23% Similarity=0.424 Sum_probs=104.0
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+|+|++ .++|+|+||+|++| .+||+||+|||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 35999999999999 99999999999999999999999999999999999998877 78899999
Q ss_pred ccccccccccc-cHHHHHhcCC----CC-CCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGK----GG-DATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~----~~-~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
+|||++.+|.+ |++||+.+.. .+ ...++++.++++..++.++....|
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 128 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKI 128 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCch
Confidence 99999999986 9999998631 00 111356788899999887655543
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-20 Score=205.82 Aligned_cols=128 Identities=27% Similarity=0.446 Sum_probs=110.6
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.|+.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999963 3699999999999999999999999999999999999999999999999999988888999999
Q ss_pred cccccccccccc-cHHHHHhcCCC---------CCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKG---------GDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~---------~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|||++.+|.+ |++||+.++.. +...++++.++++..++.+++.+.|..+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 148 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSL 148 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccC
Confidence 999999877654 99999997521 0123456888999999988877665443
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-20 Score=198.49 Aligned_cols=122 Identities=21% Similarity=0.369 Sum_probs=105.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ .++|+|+||++++||.++|+|++|||||||+++|.|+.+|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 3699999999999999999999999999999999999999999999999998765 56788999
Q ss_pred ccccccccc-cccHHHHHhcCCC-CCCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKG-GDATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
+|||++.+| +.|++||+.++.. ...+++++.++++..++.+...+.|
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 124 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKV 124 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhH
Confidence 999999887 5899999986421 1235678899999999977765543
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-20 Score=200.27 Aligned_cols=123 Identities=21% Similarity=0.363 Sum_probs=102.4
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5799999999642 146999999999999999999999999999999999999999999999999997653 67788999
Q ss_pred ccccccccc-cccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHhh
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~-~~a----sdeei~~Al~~A~~~dfI~~ 1167 (1178)
+|||++.+| +.|+++|+.+... ... .++++.++++..++.+....
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 129 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANK 129 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhC
Confidence 999999999 6899999986411 011 13457788888888766544
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-20 Score=201.68 Aligned_cols=129 Identities=24% Similarity=0.392 Sum_probs=107.3
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH---HHH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK---WLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~---~LR 1118 (1178)
|+++||+++|++.. ..++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 78999999996421 12699999999999999999999999999999999999999999999999999877654 358
Q ss_pred Hhcccccccccccc-ccHHHHHhcCCC-CC----CCHHHHHHHHHHcCchHHHhhcccc
Q 001041 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GD----ATEAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~----asdeei~~Al~~A~~~dfI~~LP~g 1171 (1178)
+++++|||++.+|. .|++||+.++.. .. ..++++.++++..++.+...+.|..
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ 140 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhh
Confidence 89999999999997 699999986421 01 1245688899999998877665543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.9e-20 Score=206.01 Aligned_cols=128 Identities=23% Similarity=0.421 Sum_probs=109.9
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
++++||+++|+++ .++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999632 35999999999999999999999999999999999999999999999999998888888999999
Q ss_pred cccccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp--~LF~gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||+| .+|+.|++||+.++.. ...+ ++.+.++++..++.++..+.|..+
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 999998 4888999999987531 0122 345788899999988877766543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-20 Score=190.96 Aligned_cols=128 Identities=31% Similarity=0.450 Sum_probs=103.9
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR 1118 (1178)
|+++||+..|..+. ..++|+|+||+|++||.|||+||||||||||+++|-++-.|++|.|.|+|.|+..++- ..+|
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 67999999996432 2369999999999999999999999999999999999999999999999999999984 4444
Q ss_pred -Hhccccccccccc-cccHHHHHhc----CCCCC-CCHHHHHHHHHHcCchHHHh-hccc
Q 001041 1119 -QQMGLVSQEPVLF-NDTIRANIAY----GKGGD-ATEAEIQAASEMANAHKFIC-SLQQ 1170 (1178)
Q Consensus 1119 -~~IsiV~Qdp~LF-~gTIreNI~~----g~~~~-asdeei~~Al~~A~~~dfI~-~LP~ 1170 (1178)
++||+|+|+..|+ +-|++|||.+ ..... ...+.+.+.++..++.+... +.|.
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~ 141 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPS 141 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCch
Confidence 5799999999988 5599999983 22111 12455677788888886665 4453
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-20 Score=195.26 Aligned_cols=120 Identities=21% Similarity=0.388 Sum_probs=102.0
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|++||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 359999999999999999999999999999999999999999999999999975 3467889999
Q ss_pred ccccccccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHh
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFIC 1166 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~ 1166 (1178)
++||++.+| ..|+++|+.++......++++.++++..++.+...
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 122 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLID 122 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhh
Confidence 999999986 68999999986321223456778888777765543
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-20 Score=199.93 Aligned_cols=126 Identities=29% Similarity=0.424 Sum_probs=104.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR~ 1119 (1178)
|+++||+++|+. +.++|+|+||+|++||++||+|++|||||||+++|.|+++|++|+|.+||.++.+++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999952 236999999999999999999999999999999999999999999999999998876544 788
Q ss_pred hcccccccccc-ccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHhhccc
Q 001041 1120 QMGLVSQEPVL-FNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1120 ~IsiV~Qdp~L-F~gTIreNI~~g~~-~~asd----eei~~Al~~A~~~dfI~~LP~ 1170 (1178)
.+++|||+|.+ +..|++|||.++.. ...++ +++.++++..++.+...+.|.
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPI 136 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCch
Confidence 99999999987 57899999987521 11222 346778888888877665543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.4e-20 Score=204.96 Aligned_cols=131 Identities=27% Similarity=0.470 Sum_probs=111.7
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCcccCCCChHHH
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~---G~I~IDG~dI~~i~l~~L 1117 (1178)
+-|+++|++|+|++. ..++|+|+||+|++||.+||+|++|||||||+++|+|+++|++ |+|.+||.++.+.+...+
T Consensus 4 ~~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 4 NIVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred ceEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 359999999999642 2359999999999999999999999999999999999999987 899999999988888889
Q ss_pred HHhcccccccc--ccccccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHhhccccc
Q 001041 1118 RQQMGLVSQEP--VLFNDTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 R~~IsiV~Qdp--~LF~gTIreNI~~g~~-~~asd----eei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|++|||+| .+|+.|++|||.++.. ...+. +++.++++..++.++..+.|..|
T Consensus 83 ~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (282)
T PRK13640 83 REKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANL 144 (282)
T ss_pred HhheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 99999999998 4678999999987621 12333 44788999999999888766544
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.6e-20 Score=202.12 Aligned_cols=125 Identities=31% Similarity=0.503 Sum_probs=105.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~---l~~LR~ 1119 (1178)
|+++||+++|++ +.++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 578999999963 146999999999999999999999999999999999999999999999999998877 567889
Q ss_pred hcccccccccccc-ccHHHHHhcCCC-------------CCCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGKG-------------GDATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~-------------~~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
.+++|||++.+|. .|++||+.++.. ....++++.++++..++.+...+-|
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 142 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA 142 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc
Confidence 9999999999886 699999986421 0122456778888888887665543
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.6e-20 Score=201.76 Aligned_cols=125 Identities=30% Similarity=0.513 Sum_probs=104.9
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh---HHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL---KWLRQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l---~~LR~ 1119 (1178)
|+++||+++|+. +.++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.++.+++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 2359999999999999999999999999999999999999999999999999987754 45788
Q ss_pred hcccccccccccc-ccHHHHHhcCCCC-------------CCCHHHHHHHHHHcCchHHHhhcc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGKGG-------------DATEAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~~-------------~asdeei~~Al~~A~~~dfI~~LP 1169 (1178)
++++|||++.+|. .|++||+.++... ...++++.++++..++.++..+.|
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 143 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA 143 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc
Confidence 9999999999886 6999999875311 112346788888888887765544
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.5e-20 Score=197.93 Aligned_cols=118 Identities=25% Similarity=0.450 Sum_probs=103.7
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|++ .++|+|+||+|++||.+||+||+|||||||+++|.|+++|++|+|.+||.++.+++...+|+++
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999963 3599999999999999999999999999999999999999999999999999998888899999
Q ss_pred cccccccccccccHHHHHhcCC---CCCCCHHHHHHHHHHcCch
Q 001041 1122 GLVSQEPVLFNDTIRANIAYGK---GGDATEAEIQAASEMANAH 1162 (1178)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~---~~~asdeei~~Al~~A~~~ 1162 (1178)
++|||++.+|+.|++||+.++. .....++++.++++..++.
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~ 127 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP 127 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC
Confidence 9999999999999999998631 1112345577888888875
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-20 Score=199.54 Aligned_cols=123 Identities=31% Similarity=0.512 Sum_probs=103.4
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ .++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ..|++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--~~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP--PERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc--hhhccEE
Confidence 578999999963 36999999999999999999999999999999999999999999999999998654 3578899
Q ss_pred cccccccccc-ccHHHHHhcCCCC-----CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPVLFN-DTIRANIAYGKGG-----DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~LF~-gTIreNI~~g~~~-----~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|||++.+|. .|++||+.++... ...++++.++++..++.++..+.|.
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 129 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPH 129 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChh
Confidence 9999999885 6999999875210 1123467888999999887766543
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.8e-20 Score=198.25 Aligned_cols=126 Identities=34% Similarity=0.582 Sum_probs=106.1
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccc
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1178)
+++||+++|+++ +.++|+|+||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++.+.+...+|++|++
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 468999999642 2469999999999999999999999999999999999999999999999999998888889999999
Q ss_pred ccccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1124 VSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1124 V~Qdp--~LF~gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+||++ .+++.|++||+.++.. ...+ ++++.++++..++.+++.+.|.
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 133 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF 133 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 99998 4678999999987421 0112 3456778888898887766553
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-20 Score=199.07 Aligned_cols=130 Identities=25% Similarity=0.382 Sum_probs=107.8
Q ss_pred cEEEeeeEEeCCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---H
Q 001041 1042 EIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---L 1117 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~-~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---L 1117 (1178)
-|+++||+++|+++.. .++|+|+||+|++||.+||+|++|||||||+++|+|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999964211 25999999999999999999999999999999999999999999999999998887654 3
Q ss_pred -HHhccccccccccccc-cHHHHHhcCC--C---CCCCHHHHHHHHHHcCchHHHhhcccc
Q 001041 1118 -RQQMGLVSQEPVLFND-TIRANIAYGK--G---GDATEAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1118 -R~~IsiV~Qdp~LF~g-TIreNI~~g~--~---~~asdeei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++.+++|||++.+|.+ |++||+.++. . .....+++.++++..++.++..+.|..
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 146 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQ 146 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhh
Confidence 3689999999999875 9999997631 0 012245688889999998887766643
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-20 Score=210.97 Aligned_cols=128 Identities=25% Similarity=0.421 Sum_probs=106.8
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR 1118 (1178)
|+++||+++|+.+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 346999999999999999999999999999999999999999999999999999887654 47
Q ss_pred Hhcccccccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1119 QQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
++|++|||++.+|. .|++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 139 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPA 139 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 89999999999986 799999987521 1122 3457788888888877665543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=6e-20 Score=205.63 Aligned_cols=131 Identities=22% Similarity=0.450 Sum_probs=110.5
Q ss_pred cEEEeeeEEeCCCCC---CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC-hHHH
Q 001041 1042 EIELHHVSFKYPSRP---DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-LKWL 1117 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~---~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~-l~~L 1117 (1178)
-|+++||+++|++.. ++++|+|+||+|++||.+||+|++|||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 389999999997421 246999999999999999999999999999999999999999999999999998754 4668
Q ss_pred HHhcccccccc--ccccccHHHHHhcCCCC-CC----CHHHHHHHHHHcCchHHHhhccccc
Q 001041 1118 RQQMGLVSQEP--VLFNDTIRANIAYGKGG-DA----TEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 R~~IsiV~Qdp--~LF~gTIreNI~~g~~~-~a----sdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|+++++|||+| .+|..|+.+|+.++... .. .++++.++++..++.++..+.|..|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 145 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLL 145 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 89999999998 47777999999986311 11 2456888999999999988877654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-20 Score=193.85 Aligned_cols=121 Identities=18% Similarity=0.342 Sum_probs=105.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|++ .++|+|+||+|++||++||+|++|||||||+++|+|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 578999999963 35999999999999999999999999999999999999999999999999987654 57889999
Q ss_pred ccccccccc-cccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~L 1168 (1178)
++||++.++ +.|++||+.+... ..+++++.++++..++.++..+.
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~l~~~~l~~~~~~~ 122 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHA-DHSDEQVEEALARVGLNGFEDRP 122 (201)
T ss_pred EeccccccCCCcCHHHHHHhhcc-cccHHHHHHHHHHcCChhhhcCc
Confidence 999999876 6899999987632 35678889999999998765543
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-20 Score=198.38 Aligned_cols=128 Identities=27% Similarity=0.385 Sum_probs=105.1
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH---H
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---R 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L---R 1118 (1178)
|+++||+++|++.. ..++|+|+||+|++||++||+||+|||||||+++|+|+++|++|+|.+||.|+.+++...+ |
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 78999999996321 1369999999999999999999999999999999999999999999999999988876543 4
Q ss_pred -Hhcccccccccccc-ccHHHHHhcCCC-CCC----CHHHHHHHHHHcCchHHHhhccc
Q 001041 1119 -QQMGLVSQEPVLFN-DTIRANIAYGKG-GDA----TEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~a----sdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
++|++|||++.+|. .|++||+.++.. ... .++++.++++..++++...+.|.
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 68999999999995 699999986311 011 13457788888888877666543
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1178 | ||||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-97 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-33 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-96 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 4e-33 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-74 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-31 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-74 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-31 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-71 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-26 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 6e-71 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 5e-25 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-62 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 7e-27 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 6e-58 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-21 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-56 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-20 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-56 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 9e-21 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-56 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 9e-21 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 9e-56 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-20 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-55 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-20 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-55 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 8e-21 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-55 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 8e-21 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-53 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-22 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-52 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-20 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-52 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-20 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-47 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-25 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-46 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-25 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-45 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 6e-26 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-44 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-25 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 8e-23 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-22 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-05 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-21 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 2e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-21 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 5e-21 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 9e-05 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-20 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 9e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-19 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-06 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-19 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-19 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-07 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 7e-19 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 5e-04 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-18 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-04 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-18 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-18 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-05 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 9e-18 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 9e-18 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-17 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-17 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-17 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 2e-17 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-17 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 1e-16 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-16 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 4e-16 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 1e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-15 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-15 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-08 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 6e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-15 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-14 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-14 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-14 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-14 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-04 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-14 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 6e-04 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 9e-14 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-14 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-13 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-12 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-12 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-11 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 6e-10 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-08 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 2e-08 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 6e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 4e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-06 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 5e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 8e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-05 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 4e-05 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 7e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 8e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 3e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 7e-04 |
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1178 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-169 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-172 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-107 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-167 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-105 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-161 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 4e-99 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-155 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 5e-81 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-149 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-66 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-137 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 5e-66 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-130 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-61 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-129 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 2e-74 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-120 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 5e-54 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-107 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 2e-59 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-63 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 9e-23 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-44 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-13 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-42 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 7e-12 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-42 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 5e-11 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 7e-42 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-40 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 4e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 6e-40 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 6e-18 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-38 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 6e-14 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 4e-38 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-14 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-33 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 9e-28 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 3e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-09 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-33 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 3e-13 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-32 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 4e-32 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-11 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-31 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-08 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-31 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-29 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 9e-09 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-08 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 4e-31 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 3e-11 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-31 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-09 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-06 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-30 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-13 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-30 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 3e-10 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 1e-29 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-09 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-07 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-29 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-10 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-29 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-09 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 4e-28 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-10 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 6e-28 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-10 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-27 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 6e-13 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 3e-25 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 8e-08 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 3e-20 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 5e-18 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 6e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-17 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-17 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-06 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-05 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 5e-17 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 2e-05 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 2e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-07 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 2e-14 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 1e-04 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 3e-14 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-13 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-09 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 8e-09 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 3e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-08 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-04 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 4e-08 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 1e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1524 bits (3947), Expect = 0.0
Identities = 444/1175 (37%), Positives = 693/1175 (58%), Gaps = 38/1175 (3%)
Query: 15 SQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMIIGSIGAIGNGLC 74
++ G+ K ++ EK +V +F +A D M++G++ AI +G+
Sbjct: 4 EEDLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVA 63
Query: 75 LPLMTLLFGDLINTFGDNQNNSET----------------VDKVSKVAVKFVYLGIGSGI 118
LPLM L+FGD+ ++F N S+ ++++ A + +G G I
Sbjct: 64 LPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLI 123
Query: 119 ASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAM 178
+++QV+ W + RQ +IR + I+ Q++ +FD GE+ R++ D I + +
Sbjct: 124 VAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHD-VGELNTRLTDDVSKINEGI 182
Query: 179 GEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGA 238
G+K+G F Q MATF GGF+I F +GW LTLV+L+ P+L +S G+ A ++S + + A
Sbjct: 183 GDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHA 242
Query: 239 YAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIV 298
YAKA +V E+ + +IRTV +F G+K+ + Y L A + G+++ + A I +G L++
Sbjct: 243 YAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLI 302
Query: 299 FCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMF 358
+ SYAL+ WYG L++ + Y+ GQV+ V +VL G+ S+G+ASP + AF + AA+++F
Sbjct: 303 YASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVF 362
Query: 359 ETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALV 418
+ I+ KP ID++ G D+I+G++E ++++FSYP+R QI G ++ + SG T ALV
Sbjct: 363 KIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALV 422
Query: 419 GQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478
G SG GKST + L++R YDP G V IDG +++ ++++R+ IG+VSQEPVLF +I +
Sbjct: 423 GNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAE 482
Query: 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
NI YG++D T +EI A + ANA FI KLP DTLVGE G QLSGGQKQRIAIARA++
Sbjct: 483 NIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
++P+ILLLDEATSALD ESE VVQ ALD+ RTT+++AHRLSTVRNAD+IA G I
Sbjct: 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVI 602
Query: 599 VEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSI 658
VE+G H +L+ + +G Y +L+ Q A E E + + + + +
Sbjct: 603 VEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKSKD--------EIDNLDMSSKD 653
Query: 659 SRGSSIGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEI 718
S S I S + + + +E P R+ LN E
Sbjct: 654 SGSSLIRRRSTRKSICGPHDQDRKLSTK---------EALDEDVPPASFWRILKLNSTEW 704
Query: 719 PVILAGTIAAMANGVILPIYGLLISSVIETFFKP--PHELKKDSRFWALIYLALGAGSFL 776
P + G A+ NG + P + ++ S V+ F P +++S ++L++L LG SF+
Sbjct: 705 PYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFI 764
Query: 777 LSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRAL 836
Q + F AG L +R+R M F+ ++ +VSWFD+P++++GA+ RL+ DAA V+
Sbjct: 765 TFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGA 824
Query: 837 VGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKM 896
G LA I QNI+ G+II+ WQL L++L ++P+I ++G +MK + G + K
Sbjct: 825 TGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKK 884
Query: 897 KYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFL 956
+ E + ++A +A+ + RTV S E+K +Y + + P + +++ V G F + +
Sbjct: 885 ELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAM 944
Query: 957 LFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASI 1016
++ YAA+F GA LV TF +V VF ++ A+ + Q SSF+ D KA +A+ I
Sbjct: 945 MYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHI 1004
Query: 1017 FAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVAL 1076
II++ +ID G ++G ++ V F YP+RP + V + L+L+++ G+T+AL
Sbjct: 1005 IRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLAL 1064
Query: 1077 VGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136
VG SG GKSTVV LL+RFYDP AG + LDG EI++L ++WLR Q+G+VSQEP+LF+ +I
Sbjct: 1065 VGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIA 1124
Query: 1137 ANIAYGK-GGDATEAEIQAASEMANAHKFICSLQQ 1170
NIAYG + EI A++ AN H+FI SL
Sbjct: 1125 ENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD 1159
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 740 bits (1912), Expect = 0.0
Identities = 226/635 (35%), Positives = 355/635 (55%), Gaps = 5/635 (0%)
Query: 4 ESNSNEASASKSQEEVGKDSSMSGNEHDSEKGKQTEKTESVPFYKLFTFADSADTALMII 63
+S + + + S K E F+++ S + ++
Sbjct: 651 SKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLN-STEWPYFVV 709
Query: 64 GSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123
G AI NG P +++F ++ F + + ++ F+ LGI S I FLQ
Sbjct: 710 GIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769
Query: 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETN-TGEVVGRMSGDTVLIQDAMGEKV 182
+ GE R+R + K++LRQDV++FD+ N TG + R++ D ++ A G ++
Sbjct: 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRL 829
Query: 183 GKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKA 242
Q +A G +I+ I GW LTL++L+ +P++A++G V M+S + + + +
Sbjct: 830 AVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGS 889
Query: 243 ASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSY 302
+ + I + RTV S T E++ + Y + L Y++ +++ GI +++ SY
Sbjct: 890 GKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSY 949
Query: 303 ALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362
A + +G L+ ++ V+ V A++ G+M++G+ S + +A + I
Sbjct: 950 AAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
+ PEID+Y T+G + + G+++ V F+YP RP+ + G S+ + G T ALVG SG
Sbjct: 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSG 1069
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
GKSTV+ L+ERFYDP AG V +DG +K+ +QW+R ++G+VSQEP+LF SI +NIAY
Sbjct: 1070 CGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAY 1129
Query: 483 GKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
G + + EEI A + AN +FID LP +T VG+ GTQLSGGQKQRIAIARA+++
Sbjct: 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQ 1189
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
P ILLLDEATSALD ESEKVVQEALD+ RT +++AHRLST++NAD+I VI GK+ E
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249
Query: 601 KGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQ 635
GTH +L+ +G Y ++ +Q K S
Sbjct: 1250 HGTHQQLLA-QKGIYFSMVSVQAGAKRSYVHHHHH 1283
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 519 bits (1338), Expect = e-172
Identities = 178/564 (31%), Positives = 300/564 (53%), Gaps = 11/564 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ I I N M L L++ + + + + + L I GI
Sbjct: 26 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMPLVVIGLMILRGIT 81
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
S++ C + +R ++ VAFFD +TG ++ R++ D+ + +
Sbjct: 82 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK-QSTGTLLSRITYDSEQVASSSS 140
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ ++ A+ +G F++ F W L+++++ P+++++ V++ +S Q
Sbjct: 141 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 200
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
+ + EQ + + V F G++ + K G++ A+ I ++ LI
Sbjct: 201 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 260
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+ A ++ + + G + V +++ L + + F G AA +F
Sbjct: 261 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 320
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
++ + E D +++D GD+E R+V F+YP R ++ I +G T ALVG
Sbjct: 321 ILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVG 376
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
+SGSGKST+ SLI RFYD G +L+DG +L+E+ L +R ++ LVSQ LF ++ +N
Sbjct: 377 RSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 436
Query: 480 IAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
IAY + + + E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QRIAIARA+L
Sbjct: 437 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 496
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+D IL+LDEATSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I V+ G I
Sbjct: 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGII 556
Query: 599 VEKGTHSKLVEDPEGAYSQLIRLQ 622
VE+GTHS+L+ G Y+QL ++Q
Sbjct: 557 VERGTHSELLAQ-HGVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 348 bits (896), Expect = e-107
Identities = 127/463 (27%), Positives = 221/463 (47%), Gaps = 12/463 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFF--KPPHELKKDSRFWAL 765
RRL P ++ IA + N L+ +++ F L
Sbjct: 14 RRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIG 73
Query: 766 IYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGAR 825
+ + G S++ SY + K++ +R F ++ M V++FD+ S+G + +R
Sbjct: 74 LMILRGITSYI----SSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSR 127
Query: 826 LSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMK 885
++ D+ V + AL +V+ ++ I+ F SWQL++I++V+ P++ ++ K
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187
Query: 886 FMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945
+ S + + + + A + + V F +E + + K G++
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSD 1005
S + A YA + T + VF S+ + ++ ++
Sbjct: 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 1006 SNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLN 1065
+ +A ++FAI+D E + D E +++ G++E +V+F YP R +V R++N
Sbjct: 308 FQRGMAACQTLFAILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNIN 363
Query: 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVS 1125
LKI AGKTVALVG SGSGKST+ SL+ RFYD D GHI +DG ++++ L LR Q+ LVS
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423
Query: 1126 QEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
Q LFNDT+ NIAY + + + +I+ A+ MA A FI +
Sbjct: 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKM 466
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 507 bits (1307), Expect = e-167
Identities = 172/564 (30%), Positives = 294/564 (52%), Gaps = 11/564 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+++ +I + N M L L++ N + + + + + L G++
Sbjct: 26 GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLS 81
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
F C ++R + V FFD E+ TG ++ R++ D+ + A
Sbjct: 82 GFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQES-TGGLLSRITYDSEQVAGATS 140
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ ++ A+ +G + F W L+LV++ P++A + ++ K+S Q A
Sbjct: 141 RALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAM 200
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
S EQ + + V S+ G++ + K + + ++ A I ++ +I
Sbjct: 201 GHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIAS 260
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+ ++ + G V A+ L + S F G AA +F
Sbjct: 261 LALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFG 320
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
++ + E D + + G+++++DV F+Y + + S S SI G T ALVG
Sbjct: 321 LMDLETERD---NGKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVG 376
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
+SGSGKST+ +L RFYD +G + +DG ++++++L +R+ LVSQ LF +I +N
Sbjct: 377 RSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANN 436
Query: 480 IAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538
IAY + + T E+I A A+A +FI+ +PQG+DT++GE+GT LSGGQ+QR+AIARA+L
Sbjct: 437 IAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALL 496
Query: 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKI 598
+D +L+LDEATSALD ESE+ +Q ALD + N+T +++AHRLST+ AD I V+ G+I
Sbjct: 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEI 556
Query: 599 VEKGTHSKLVEDPEGAYSQLIRLQ 622
+E+G H+ L+ +GAY+QL R+Q
Sbjct: 557 IERGRHADLLAQ-DGAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 341 bits (878), Expect = e-105
Identities = 115/465 (24%), Positives = 211/465 (45%), Gaps = 16/465 (3%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
+RL + ++ TIA + N L+ +++ F +S F ++
Sbjct: 14 KRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGF-----GNAESNFLRILP 68
Query: 768 LALGAGSFLLSPA----QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIG 823
+ G + SY + ++ ++R F +HM V +FD+ S+G +
Sbjct: 69 FMI-LGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLL 125
Query: 824 ARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQ 883
+R++ D+ V AL IV+ ++ L + F SWQL+L+++V+ P++ +
Sbjct: 126 SRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFV 185
Query: 884 MKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQG 943
K + S + + + A + + V S+ +E + + K + + ++
Sbjct: 186 SKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245
Query: 944 MVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFS 1003
+ A + + + T VF ++ + +S +
Sbjct: 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVT 305
Query: 1004 SDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRD 1063
S+ + +A ++F ++D E++ D E V GE+++ V+F Y + +
Sbjct: 306 SEFQRGMAACQTLFGLMDLETERDNGKYE---AERVNGEVDVKDVTFTYQGK-EKPALSH 361
Query: 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123
++ I GKTVALVG SGSGKST+ +L RFYD D+G I LDG +++ +L LR+ L
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421
Query: 1124 VSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
VSQ LFNDTI NIAY G+ T +I+ A+ A+A +FI ++
Sbjct: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM 466
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 491 bits (1266), Expect = e-161
Identities = 175/569 (30%), Positives = 264/569 (46%), Gaps = 13/569 (2%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTF---GDNQNNSETVDKVSKVAVKFVYLGIGS 116
+ I I L+ LL I+ + + + + I
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 117 GIASFLQVTCWM-ITGERQATRIRG-LYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLI 174
F++ T + IR LY + F+ N G+V+ R+ D
Sbjct: 75 PPIEFIR-QYLAQWTSNKILYDIRKKLYNH-LQALSARFYAN-NQVGQVISRVINDVEQT 131
Query: 175 QDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSR 234
+D + + T + I F LTL L P ++ V + K++
Sbjct: 132 KDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRE 191
Query: 235 GQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMV 294
A A+ + + + I V SF E N+ K ++ +
Sbjct: 192 RSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAI 251
Query: 295 MLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAA 354
+ + + G L + G + + + L + A+
Sbjct: 252 NTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASM 311
Query: 355 FKMFETINRKPEIDAYDTKGKI-LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGT 413
++F+ I+ +I + G ++ +G I++ V F Y I ++SI G
Sbjct: 312 DRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGE 368
Query: 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT 473
T A VG SG GKST+I+LI RFYD +G++LIDG N+K+F +R +IGLV Q+ +LF+
Sbjct: 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS 428
Query: 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533
++K+NI G+ AT EE+ A ++ANA FI LPQG DT VGE G +LSGGQKQR++I
Sbjct: 429 DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSI 488
Query: 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593
AR L +P IL+LDEATSALD ESE ++QEALD + +RTT+IVAHRLST+ +AD I VI
Sbjct: 489 ARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVI 548
Query: 594 HRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
G IVE GTH +L+ +GAY L +Q
Sbjct: 549 ENGHIVETGTHRELIAK-QGAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 326 bits (837), Expect = 4e-99
Identities = 115/468 (24%), Positives = 199/468 (42%), Gaps = 14/468 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
+R KP I A I + I + LLI I+ + I
Sbjct: 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 768 LALG-AGSFLLSPA----QSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822
+ + ++ P + Y NK++ IR + + + ++ + G +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQV 120
Query: 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882
+R+ D + + L I + T L I F +L L L + P ++ Y
Sbjct: 121 ISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942
++ + + E ++ V I V SF E+ + + KK + ++
Sbjct: 181 FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240
Query: 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIG-ISQSSS 1001
+ F A + GA L G T + F G + + +
Sbjct: 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLVA 299
Query: 1002 FSSDSNKAKSAAASIFAIIDRESKIDPSDESGTI-LEDVKGEIELHHVSFKYPSRPDVQV 1060
+ ++ ++ +F +ID + I + G +E +G I++ HVSF+Y + +
Sbjct: 300 SFTTLTQSFASMDRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPI 356
Query: 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120
+D+NL I G+TVA VG SG GKST+++L+ RFYD +G I +DG I+ LR Q
Sbjct: 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
+GLV Q+ +LF+DT++ NI G+ AT+ E+ A++MANAH FI +L
Sbjct: 417 IGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNL 463
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 463 bits (1194), Expect = e-155
Identities = 101/268 (37%), Positives = 153/268 (57%), Gaps = 5/268 (1%)
Query: 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKS 426
+ +++G ++ +DV F+YP PN Q+ G + ++ G ALVG +GSGKS
Sbjct: 1 MSPLS-GSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 427 TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-D 485
TV +L++ Y P G+VL+DG L ++ ++ ++ V QEP+LF S ++NIAYG
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545
T EEI + A FI PQG DT VGE G QLSGGQ+Q +A+ARA+++ PR+L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 546 LDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
LD ATSALDA ++ VQ L +RT +++ +LS A I + G + E+GT
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 604 HSKLVEDPEGAYSQLIRLQEANKESEQT 631
H +L+E G Y ++ A ++
Sbjct: 240 HLQLME-RGGCYRSMVEALAAPSDAAAH 266
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 5e-81
Identities = 58/145 (40%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKS 1085
+ P ++KG ++ VSF YP+ P+VQV + L + GK ALVG +GSGKS
Sbjct: 1 MSPLSG-SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 1086 TVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG 1145
TV +LLQ Y P G + LDG + + +L Q+ V QEP+LF + R NIAYG
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 1146 DATEAEIQAASEMANAHKFICSLQQ 1170
T EI A + + AH FI Q
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQ 144
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 445 bits (1147), Expect = e-149
Identities = 116/244 (47%), Positives = 161/244 (65%), Gaps = 1/244 (0%)
Query: 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438
DI R++ F Y I ++SI G +VG+SGSGKST+ LI+RFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDS-PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATEL 498
+ G+VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +L
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
A A FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQL 618
V+ + +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 619 IRLQ 622
+LQ
Sbjct: 242 YQLQ 245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 223 bits (572), Expect = 1e-66
Identities = 46/134 (34%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
+I ++ F+Y V + ++NL I+ G+ + +VG SGSGKST+ L+QRFY
Sbjct: 2 HHHHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
P+ G + +DG ++ WLR+Q+G+V Q+ VL N +I NI+ + ++ A+
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAA 119
Query: 1157 EMANAHKFICSLQQ 1170
++A AH FI L++
Sbjct: 120 KLAGAHDFISELRE 133
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 415 bits (1069), Expect = e-137
Identities = 105/245 (42%), Positives = 156/245 (63%), Gaps = 4/245 (1%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ R V F+Y QI S + A G SG GKST+ SL+ERFY P AGE+
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAA 502
IDG + L+ R +IG VSQ+ + G+I++N+ YG + D T E++ +LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
F++ +P ++T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ALD +M RTT+++AHRLST+ +AD I I +G+I G H++LV Y++ + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
Query: 623 EANKE 627
+
Sbjct: 239 LTVGQ 243
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 221 bits (567), Expect = 5e-66
Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 2/128 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ HV F Y Q+ RD++ + + +A G SG GKST+ SLL+RFY P AG I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
T+DG I + L+ R Q+G VSQ+ + TIR N+ YG GD T+ ++ ++A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1163 KFICSLQQ 1170
F+ ++
Sbjct: 120 SFVENMPD 127
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 396 bits (1019), Expect = e-130
Identities = 116/261 (44%), Positives = 174/261 (66%), Gaps = 3/261 (1%)
Query: 367 IDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKS 426
++++ +IE DV FSYP + N + + I SGTT ALVG +GSGKS
Sbjct: 2 LESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 427 TVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD 486
T+ L+ RFYD + G++ I G N+ ++ IR IG+V Q+ +LF +IK NI YGK D
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
AT EE+ AT+ A FI+ LP+ DT+VG G +LSGG++QRIAIAR +LKDP+I++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606
DEATS+LD+++E + Q+A++ + NRT +I+AHRLST+ +A+ I ++++GKIVEKGTH
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 607 LVEDPEGAYSQLIRLQEANKE 627
L++ G Y+++ +Q +
Sbjct: 240 LLKL-NGEYAEMWNMQSGGND 259
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 208 bits (533), Expect = 4e-61
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 3/143 (2%)
Query: 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKS 1085
++ + + IE V+F YP + + + + +N I +G T ALVG +GSGKS
Sbjct: 2 LESFSLTSH-EKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 1086 TVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG 1145
T+ LL RFYD + G I + G + K +R +G+V Q+ +LFN+TI+ NI YGK
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGK-L 118
Query: 1146 DATEAEIQAASEMANAHKFICSL 1168
DAT+ E+ A++ A + FI +L
Sbjct: 119 DATDEEVIKATKSAQLYDFIEAL 141
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 408 bits (1050), Expect = e-129
Identities = 165/571 (28%), Positives = 303/571 (53%), Gaps = 11/571 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ + + + L L G I+ + D + + + + + +
Sbjct: 38 TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR----FDLLPRYMLILGTIYALTSLL 93
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
+LQ + + R+R + + R V FFD T G+++ R+ D I + +G
Sbjct: 94 FWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR-TPHGDIISRVINDVDNINNVLG 152
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ +F + T G ++ F +L+LV LS +PL + +++ K Q
Sbjct: 153 NSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVL 212
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
+ ++E+ I + + FT E++ M + + + K G + + +G+ ++ ++
Sbjct: 213 GQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNN 272
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+AL +GG L L++ G + + + L E S + A+A ++FE
Sbjct: 273 LGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFE 332
Query: 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVG 419
++ + E D D L ++RG+IE ++V+FSY + + + I G ALVG
Sbjct: 333 ILDLEEEKD--DPDAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVG 388
Query: 420 QSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479
+GSGK+T+++L+ RFYD G++L+DGI++++ + +R IG+V Q+ +LF+ ++K+N
Sbjct: 389 PTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKEN 448
Query: 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539
+ YG AT EEI+ A +L ++ FI LP+G +T++ ++G LS GQ+Q +AI RA L
Sbjct: 449 LKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLA 508
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599
+P+IL+LDEATS +D ++EK +Q A+ ++M +T++I+AHRL+T++NAD+I V+ G+IV
Sbjct: 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIV 568
Query: 600 EKGTHSKLVEDPEGAYSQLIRLQ-EANKESE 629
E G H +L++ G Y +L Q E E
Sbjct: 569 EMGKHDELIQK-RGFYYELFTSQYGLVVEKE 598
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 258 bits (661), Expect = 2e-74
Identities = 128/486 (26%), Positives = 224/486 (46%), Gaps = 24/486 (4%)
Query: 691 PAGPSQPTEEVAPEVPT-RRL-AYLN--KPEIPVILAGTIAAMANGVILPIYGLLISSVI 746
P GP + T RRL YL + ++ + GV+ P LI I
Sbjct: 8 PHGPILEKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPY---LIGKTI 64
Query: 747 ETFFKPP--HELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKV 804
+ F P L + IY +L Q ++ R+R FEK+
Sbjct: 65 DVVFVPRRFDLLPRYMLILGTIYALTSLLFWL----QGKIMLTLSQDVVFRLRKELFEKL 120
Query: 805 IHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864
+ V +FD G I +R+ D ++ ++G+++ + I T A +I+ F +
Sbjct: 121 QRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178
Query: 865 LALIILVMLPL-IGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEK 923
L+L+ L ++PL + ++ + K F + ++ + + + + + + F EEK
Sbjct: 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGII-EEDISGLTVIKLFTREEK 237
Query: 924 VMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVF 983
M+ + + E+ K G + + SG + +A G L T +
Sbjct: 238 EMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIA 297
Query: 984 KVFFSLTMTAIG-ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGE 1042
F + +++ S+ + A ++A IF I+D E + D D L +V+GE
Sbjct: 298 -TFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD--DPDAVELREVRGE 354
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE +V F Y V +D+ I+ G+ VALVG +GSGK+T+V+LL RFYD D G I
Sbjct: 355 IEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
+DG++I+K++ LR +G+V Q+ +LF+ T++ N+ YG AT+ EI+ A+++ ++
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGN-PGATDEEIKEAAKLTHSD 471
Query: 1163 KFICSL 1168
FI L
Sbjct: 472 HFIKHL 477
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-120
Identities = 120/276 (43%), Positives = 169/276 (61%), Gaps = 6/276 (2%)
Query: 356 KMFETINRKPEIDAYDTKG-KILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTT 414
MF+ + + E+ D G L +G IE +V+FSY + S ++ G T
Sbjct: 27 NMFDLLKEETEVK--DLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQT 82
Query: 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474
ALVG SG+GKST++ L+ RFYD +G + IDG ++ + +R IG+V Q+ VLF
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534
+I DNI YG+ A +E+ A + A I P+G T VGE G +LSGG+KQR+AIA
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH 594
R ILK P I+LLDEATSALD +E+ +Q +L ++ NRTT++VAHRLSTV NAD I VI
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIK 262
Query: 595 RGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQ 630
G IVE+G H L+ G Y+ + +LQ+ +E+ +
Sbjct: 263 DGCIVERGRHEALLSR-GGVYADMWQLQQGQEETSE 297
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 5e-54
Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 6/154 (3%)
Query: 1016 IFAIIDRESKIDPSDESGTI-LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTV 1074
+F ++ E+++ D G L KG IE +V F Y + +D++ + G+T+
Sbjct: 28 MFDLLKEETEV--KDLPGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQTL 83
Query: 1075 ALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134
ALVG SG+GKST++ LL RFYD +G I +DG +I ++ LR +G+V Q+ VLFNDT
Sbjct: 84 ALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDT 143
Query: 1135 IRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
I NI YG+ A E++AA++ A H I +
Sbjct: 144 IADNIRYGR-VTAGNDEVEAAAQAAGIHDAIMAF 176
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 348 bits (894), Expect = e-107
Identities = 150/572 (26%), Positives = 269/572 (47%), Gaps = 26/572 (4%)
Query: 57 DTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGS 116
L + + + L P + D GD V K + + + +
Sbjct: 24 FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD-------FSLVLKTGILMLIVALIG 76
Query: 117 GIASFLQVTCWMITGERQATRIRG-LYLKTILRQDVAFFD-NETNTGEVVGRMSGDTVLI 174
+ + +R L+ K + + N +T ++ R++ D +
Sbjct: 77 AVGGIGCTVFASYASQNFGADLRRDLFRKV---LSFSISNVNRFHTSSLITRLTNDVTQL 133
Query: 175 QDAMGEKVGKFLQLMA----TFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISK 230
Q+ V L+++ F+GG ++A L+ V++ IP + + + +
Sbjct: 134 QNL----VMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNP 189
Query: 231 MSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIG 290
+ + Q + + VV + + +R V +F E+ N++K + +S +
Sbjct: 190 LFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFA 249
Query: 291 LGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAG 350
L + + IV +W+GG L+ G ++ ++ SL L+
Sbjct: 250 LPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRA 309
Query: 351 QAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISIS 410
A+A ++ E +N KP I L ++ G + +V F Y + + SG + S+
Sbjct: 310 SASAKRVLEVLNEKPAI-EEADNALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVK 367
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470
G+ A++G++GSGKST+++LI R DP+ G V +D ++++ +L+ +R I V QE V
Sbjct: 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETV 427
Query: 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
LF+G+IK+N+ +G++DAT +EI A ++A FI LP+G D+ V G SGGQKQR
Sbjct: 428 LFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQR 487
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI 590
++IARA++K P++L+LD+ TS++D +EK + + L R TT I+ ++ T AD I
Sbjct: 488 LSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKI 547
Query: 591 AVIHRGKIVEKGTHSKLVED----PEGAYSQL 618
V+H GK+ GTH +L+E E SQ
Sbjct: 548 LVLHEGKVAGFGTHKELLEHCKPYREIYESQF 579
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 2e-59
Identities = 95/413 (23%), Positives = 196/413 (47%), Gaps = 19/413 (4%)
Query: 763 WALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822
++ L + + + F + A +R F KV+ +S + + ++
Sbjct: 65 TGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSL 122
Query: 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882
RL+ D ++ LV L +V+ G+++A + + +L+ +++ ++P I +
Sbjct: 123 ITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVW 182
Query: 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942
K + +E ++V + + +R V +F EE + ++K E+ ++ I
Sbjct: 183 LTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISA 242
Query: 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV-------FKVFFSLTMTAIG 995
+ F++ A + G LV + + + ++ FSL M
Sbjct: 243 FSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNI 302
Query: 996 ISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSR 1055
++ +A ++A + +++ + I+ +D + L +V+G + +V F+Y
Sbjct: 303 LNFIV-------RASASAKRVLEVLNEKPAIEEADNALA-LPNVEGSVSFENVEFRYFE- 353
Query: 1056 PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK 1115
V +N ++ G VA++GE+GSGKST+++L+ R DP+ G + +D ++++ ++LK
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLK 413
Query: 1116 WLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168
LR + V QE VLF+ TI+ N+ +G+ DAT+ EI A+++A H FI SL
Sbjct: 414 DLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISL 465
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 1e-63
Identities = 73/311 (23%), Positives = 132/311 (42%), Gaps = 6/311 (1%)
Query: 381 RGDIELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
G + ++D+ Y I S SIS G L+G++GSGKST++S R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
GE+ IDG++ L+ RK G++ Q+ +F+G+ + N+ + +EI +
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEV 132
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
I++ P +D ++ + G LS G KQ + +AR++L +ILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619
+++ L + + T ++ R+ + D VI K+ + + +L P +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGF 252
Query: 620 RLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVSFGLP 679
+ L + + SR +G + I LP
Sbjct: 253 I-GSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRPEHLLP 311
Query: 680 SGQFADTALGE 690
S GE
Sbjct: 312 SDIADVILEGE 322
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 9e-23
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 6/130 (4%)
Query: 1040 KGEIELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD 1098
G++ + ++ KY + +++ I G+ V L+G +GSGKST++S R + +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Query: 1099 AGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
G I +DGV + L+ R+ G++ Q+ +F+ T R N+ ++ EI ++
Sbjct: 75 -GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD--PNAAHSDQEIWKVADE 131
Query: 1159 ANAHKFICSL 1168
I
Sbjct: 132 VGLRSVIEQF 141
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 5e-44
Identities = 62/242 (25%), Positives = 117/242 (48%), Gaps = 21/242 (8%)
Query: 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
++ + +V + + + I G A+ G +G+GK++++ +I +P
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATEL 498
G++ G +I SQ + G+IK+NI +G D+ + A +L
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQL 109
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ I K + + ++GE G LSGGQ+ RI++ARA+ KD + LLD LD +E
Sbjct: 110 E---EDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTE 166
Query: 559 K-VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
K + + + ++M N+T ++V ++ ++ AD I ++H G GT S+L + +S
Sbjct: 167 KEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSS 225
Query: 618 LI 619
+
Sbjct: 226 KL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
E+ + +V+ + V +D+N KI G+ +A+ G +G+GK++++ ++ +P
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 1100 GHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK 1143
G I G ++ SQ + TI+ NI +G
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGV 93
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 1e-42
Identities = 73/254 (28%), Positives = 129/254 (50%), Gaps = 23/254 (9%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
I +R+ F++ AR + +G + SI G A+VGQ G GKS+++S + D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELA 499
V I G + V Q+ + S+++NI +G ++ + A L
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALL 107
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-SE 558
++ LP G T +GE G LSGGQKQR+++ARA+ + I L D+ SA+DA +
Sbjct: 108 ---PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 559 KVVQEALDR--IMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
+ + + ++ N+T ++V H +S + D+I V+ GKI E G++ +L+ +GA++
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFA 223
Query: 617 QLIRLQEANKESEQ 630
+ +R ++
Sbjct: 224 EFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 7e-12
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
I + + +F + +R D + I G VA+VG+ G GKS+++S L D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK 1143
H+ + G + V Q+ + ND++R NI +G
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGC 90
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 3e-42
Identities = 68/300 (22%), Positives = 128/300 (42%), Gaps = 30/300 (10%)
Query: 353 AAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSG 412
E E + + + + + + + I G
Sbjct: 10 VTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTP-----VLKDINFKIERG 64
Query: 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472
A+ G +G+GK++++ +I +P G++ G +I SQ +
Sbjct: 65 QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIM 111
Query: 473 TGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
G+IK+NI G D+ + A +L + I K + + ++GE G LSGGQ+ R
Sbjct: 112 PGTIKENI-IGVSYDEYRYRSVIKACQLE---EDISKFAEKDNIVLGEGGITLSGGQRAR 167
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVV-QEALDRIMVNRTTVIVAHRLSTVRNADM 589
I++ARA+ KD + LLD LD +EK + + + ++M N+T ++V ++ ++ AD
Sbjct: 168 ISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADK 227
Query: 590 IAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSS 649
I ++H G GT S+L +S + ++ + +R++ I E+L S
Sbjct: 228 ILILHEGSSYFYGTFSELQNL-RPDFSSKLMGCDSFDQFSA----ERRNSILTETLHRFS 282
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 5e-11
Identities = 26/118 (22%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
E + +++ + K +SF S V +D+N KI G+ +A+ G +G
Sbjct: 15 EEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTG 74
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139
+GK++++ ++ +P G I G ++ SQ + TI+ NI
Sbjct: 75 AGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI 119
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 7e-42
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 26/242 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+++ ++ ++Y G +++I G A++G +G GKST+ P +G +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIAYG------KDDATTEEIR 493
L D I+ + +R+ IG+V Q+P LF+ S+ ++++G +D + +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
A + DK LS GQK+R+AIA ++ +P++L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 554 DAESEKVVQEALDRIM--VNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVED 610
D + + L + + T +I H + V D + V+ G+++ +G ++ +
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 611 PE 612
E
Sbjct: 235 KE 236
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 25/104 (24%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+++ +++ Y + +N+ I+ G+ A++G +G GKST+ P +G I
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 1103 TLDGVEIQ--KLQLKWLRQQMGLVSQEPV--LFNDTIRANIAYG 1142
D I + + LR+ +G+V Q+P LF+ ++ ++++G
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG 109
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 149 bits (377), Expect = 3e-40
Identities = 45/268 (16%), Positives = 104/268 (38%), Gaps = 30/268 (11%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L++V + + E ++ ++ G ++G +GSGK+T++ I P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG--SIKDNIAYGKD--DATTEEIRVATEL 498
+ I+G+ +++ IR I + P + ++ D + ++ + +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 499 AN-AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ + + +LS GQ + + A+ P I+ LDE +DA
Sbjct: 115 LKLGEEILRRKL-----------YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 558 EKVVQEALDRIMVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEK-GTHSKLVEDP--EG 613
V+ + + ++V H L + + A G ++ + S+L+E EG
Sbjct: 164 RHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEG 221
Query: 614 AYSQLIRLQEANKESEQTIDGQRKSEIS 641
+ + + + + + G +
Sbjct: 222 ERNDALLVLDIMDKKVSIVKGDLGMKFG 249
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 22/103 (21%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +V + + ++NL++ G+ V ++G +GSGK+T++ + P +G+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLF--NDTIRANIAYG 1142
I ++G+E++K +R + + P + T+ +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLY 97
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 6e-40
Identities = 71/276 (25%), Positives = 127/276 (46%), Gaps = 31/276 (11%)
Query: 383 DIELRDVYFSYPAR-PNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440
IE+ +V + P E + S+ I+ G + G +GSGKST++ ++ +P +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIAYG-KDDATTEEI--RVA 495
G+VL DG K IR+ IG+ Q P F + D +A+ K+ + V
Sbjct: 62 GDVLYDGERKK---GYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 496 TELA----NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
+ + F D++P LSGG+K+R+AIA I+ +P IL+LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 552 ALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
LD E + + +++ + +T ++++H + TV + D + V+ +GK V GT + +E
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
Query: 610 DPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESL 645
+ + L + G+ +S + L
Sbjct: 228 KYDPRFFTSKMLVMR----RLVLKGEDPFSMSDDEL 259
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 84.2 bits (209), Expect = 6e-18
Identities = 24/104 (23%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 1043 IELHHVSFKYPSRP--DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
IE+ +VS + + + +++L I G+ + + G +GSGKST++ ++ +P +G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPV--LFNDTIRANIAYG 1142
+ DG ++ + +R+ +G+ Q P F + + +A+
Sbjct: 63 DVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFA 103
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-38
Identities = 75/250 (30%), Positives = 124/250 (49%), Gaps = 39/250 (15%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L ++ + Q + S+ + +G ++G SG+GKST+I + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAY-----GKDDATTEEIR 493
VL+DG L E +L R++IG++ Q L + ++ N+A + R
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR-R 143
Query: 494 VATELANAAKFIDKLPQGIDTLVG------EHGTQLSGGQKQRIAIARAILKDPRILLLD 547
V L+ LVG + + LSGGQKQR+AIARA+ +P++LL D
Sbjct: 144 VTELLS---------------LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCD 188
Query: 548 EATSALDAESEKVVQEALDRIMVNR----TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602
+ATSALD + + + E L I NR T +++ H + V+ D +AVI G+++E+
Sbjct: 189 QATSALDPATTRSILELLKDI--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246
Query: 603 THSKLVEDPE 612
T S++ P+
Sbjct: 247 TVSEVFSHPK 256
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 6e-14
Identities = 29/107 (27%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +++ + +Q +++L + AG+ ++G SG+GKST++ + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFN----DTIRANIAY 1141
+ +DG E+ L +L R+Q+G++ Q FN T+ N+A
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQH---FNLLSSRTVFGNVAL 128
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 4e-38
Identities = 53/260 (20%), Positives = 109/260 (41%), Gaps = 29/260 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I+L + + I S I+ G L G +G+GK+T+++++ + +G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 444 LIDGINL--KEFQLQWIRKKIGLVSQE---PVLFTGSIKDNIAYGKDDA-------TTEE 491
+ G + + +R+ IG VS + D + G + E
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
A +L + + G+ ++ LS G+KQR+ IARA++ P++L+LDE +
Sbjct: 139 RNEAHQL------LKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAA 190
Query: 552 ALDAESEKVVQEALDRIMVNRTT---VIVAHRLSTVRNA-DMIAVIHRGKIVEKGTHSKL 607
LD + + + LD + + T + V H + + I ++ G+ +++G +
Sbjct: 191 GLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDI 250
Query: 608 VEDP--EGAYSQLIRLQEAN 625
+ + + + +Q N
Sbjct: 251 LTSENMSRFFQKNVAVQRWN 270
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 14/127 (11%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I+L + + + + ++ +I G L G +G+GK+T++++L + +G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 1103 TLDGVEIQKL--QLKWLRQQMGLVSQE---PVLFNDTIRANI---AYGKGG---DATEAE 1151
L G K+ + +RQ +G VS + + + A+ G D +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 1152 IQAASEM 1158
A ++
Sbjct: 139 RNEAHQL 145
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 2e-33
Identities = 45/216 (20%), Positives = 80/216 (37%), Gaps = 28/216 (12%)
Query: 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449
Y S + + + S ++G++G+GK+T+I L+ P G+ +
Sbjct: 356 YPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-- 413
Query: 450 LKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDK 507
+ +KI V LF I+ + ++ + + ID+
Sbjct: 414 ----NVSMKPQKIAPKFPGTVRQLFFKKIRGQF---LNPQFQTDVVKPLRIDD---IIDQ 463
Query: 508 LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDR 567
Q LSGG+ QR+AI A+ I L+DE ++ LD+E + + + R
Sbjct: 464 EVQ-----------HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 568 IM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVE 600
+ +T IV H AD + V
Sbjct: 513 FILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 9e-28
Identities = 45/234 (19%), Positives = 86/234 (36%), Gaps = 25/234 (10%)
Query: 383 DIELRDVYFSYPARPNEQIFSGF-SISISSGTTAALVGQSGSGKSTVISLI--------E 433
V Y A F + G LVG +G GKST + ++
Sbjct: 77 TNLEAHVTHRYSANS----FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG 132
Query: 434 RFYDPQAGEVLIDGINLKEFQ---LQWIRKKIGLVSQEPV--LFTGSIKDNIAYGKDDAT 488
RF DP + +I E Q + + I + + +IK + +
Sbjct: 133 RFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK 192
Query: 489 TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDE 548
+ ++ K + ++ ++ +LSGG+ QR AI + +++ + + DE
Sbjct: 193 LRMEKSPEDVKRYIKILQ-----LENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDE 247
Query: 549 ATSALDAESEKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKIVE 600
+S LD + + + ++ VI H LS + +D + +I+ V
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 3e-13
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 1020 IDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGE 1079
E+ ++ L++ + S K V + + + ++GE
Sbjct: 329 FRTEALQFRIADATEDLQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGE 386
Query: 1080 SGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV--LFNDTIRA 1137
+G+GK+T++ LL PD G I KL + Q++ V LF IR
Sbjct: 387 NGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRG 440
Query: 1138 NI 1139
Sbjct: 441 QF 442
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-09
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
HV+ +Y + R G+ + LVG +G GKST + +L P+ G
Sbjct: 77 TNLEAHVTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133
Query: 1102 IT-----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134
G E+Q K L + + + + N
Sbjct: 134 FDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP 177
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 7e-33
Identities = 77/246 (31%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I++ + S+ + ++ G ++ I G ++G SGSGKST + + D GE+
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 444 LIDGINL--KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG--------KDDATTEEI 492
+IDGINL K+ L +R+++G+V Q LF ++ +NI ++ A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE---- 137
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
A A + +DK+ G+ + LSGGQ QR+AIARA+ +P+I+L DE TSA
Sbjct: 138 ------AKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSA 189
Query: 553 LDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSK 606
LD E +V E L +M T V+V H + R D + + G I+E+G
Sbjct: 190 LDPE---MVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPED 245
Query: 607 LVEDPE 612
L + P+
Sbjct: 246 LFDRPQ 251
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 3e-13
Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 10/119 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
I++H + + ++V + +N+ IR G+ V ++G SGSGKST + L D D G I
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 1103 TLDGVEI--QKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQA 1154
+DG+ + + L +R+++G+V Q LF + T+ NI + +AE +A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKA 140
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 3e-32
Identities = 69/237 (29%), Positives = 117/237 (49%), Gaps = 36/237 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + + S+ P + + S+S+ G ++G SG GK+T++ + F P +GE+
Sbjct: 5 LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 444 LIDG--INLKEFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYG--KDDATTEEI--RV 494
+ G I K L +++G + QE VLF T + NIAYG T + R+
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT--VYRNIAYGLGNGKGRTAQERQRI 119
Query: 495 AT--ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
EL ++ + P +LSGGQ+QR A+ARA+ DP ++LLDE SA
Sbjct: 120 EAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFSA 168
Query: 553 LDAESEKVVQEALDRIM--VNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGT 603
LD + + ++E + + ++ V V+H L AD IAV+ +G+I++ +
Sbjct: 169 LDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTAS 222
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 10/122 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + H+S + + V D++L + G+ + ++G SG GK+T++ L F PD+G I
Sbjct: 5 LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 1103 TLDGVEIQKLQLKWL---RQQMGLVSQEPVLF-NDTIRANIAYG-KGGDATEAEIQA-AS 1156
+L G I + L +++G + QE VLF + T+ NIAYG G A+ +
Sbjct: 62 SLSGKTIFS-KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIE 120
Query: 1157 EM 1158
M
Sbjct: 121 AM 122
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 70/261 (26%), Positives = 121/261 (46%), Gaps = 54/261 (20%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + D++ Y ++ G S+ +G +++G SGSGKST + I P G +
Sbjct: 7 LHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 444 LIDGINL-------------KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------ 483
+++G N+ + QL+ +R ++ +V Q L++ ++ +N+
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 123
Query: 484 --KDDATTEEIRVATELAN----AAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537
K DA A + + K P LSGGQ+QR++IARA+
Sbjct: 124 LSKHDA----RERALKYLAKVGIDERAQGKYP-----------VHLSGGQQQRVSIARAL 168
Query: 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVN-----RTTVIVAHRLSTVRN-ADMIA 591
+P +LL DE TSALD E +V E L IM +T V+V H + R+ + +
Sbjct: 169 AMEPDVLLFDEPTSALDPE---LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224
Query: 592 VIHRGKIVEKGTHSKLVEDPE 612
+H+GKI E+G ++ +P+
Sbjct: 225 FLHQGKIEEEGDPEQVFGNPQ 245
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 2e-11
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 18/116 (15%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ------ 1110
+V + ++L+ RAG ++++G SGSGKST + + P G I ++G I
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 1111 -------KLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG----KGGDATEAEIQA 1154
K QL+ LR ++ +V Q L+ + T+ N+ G +A +A
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA 133
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 68/199 (34%), Positives = 102/199 (51%), Gaps = 27/199 (13%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG- 474
L+G +G+GKS + LI P GEV ++G ++ + R+ IG V Q+ LF
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHL 85
Query: 475 SIKDNIAYGKDDATTEEI--RV--ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
S+ NIAYG + E RV E A +D+ P +LSGG++QR
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSGGERQR 134
Query: 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNRTTVIVAH----RLSTV 584
+A+ARA++ PR+LLLDE SA+D +++ V+ E L + + + V H
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML- 193
Query: 585 RNADMIAVIHRGKIVEKGT 603
AD +AV+ G+IVEKG
Sbjct: 194 --ADEVAVMLNGRIVEKGK 210
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 4/81 (4%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122
+++ ++ L+G +G+GKS + L+ PD G + L+G +I L + R+ +G
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 1123 LVSQEPVLF-NDTIRANIAYG 1142
V Q+ LF + ++ NIAYG
Sbjct: 74 FVPQDYALFPHLSVYRNIAYG 94
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (325), Expect = 3e-31
Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 23/228 (10%)
Query: 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP 438
D+ D++ + + + + + G ++G +G GK+T ++
Sbjct: 261 DLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA 320
Query: 439 QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATEL 498
G V + + K + G+++ + DA + E+
Sbjct: 321 DEGSVTPEKQI--------LSYKPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEV 369
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ L+ + LSGG+ Q++ IA + K+ + +LD+ +S LD E
Sbjct: 370 TK--------RLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEER 421
Query: 559 KVVQEALDRIMVNR--TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
+V +A+ R+ R T I+ H LS AD I V +G+ + G
Sbjct: 422 YIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGL 468
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 9e-29
Identities = 45/240 (18%), Positives = 99/240 (41%), Gaps = 20/240 (8%)
Query: 387 RDVYFSYPARPNEQIFSGFSISI-SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445
+V Y F F + + T ++G++G GK+TV+ ++ P G+
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56
Query: 446 DGINLKEFQLQWIR-KKIGLVSQEPVLFTGSIKDNIAYGKDDATTE----EIRVATELAN 500
+ K+ L+ R K+I +E ++ +K + ++ + +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114
Query: 501 AAKFIDKLPQ--GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
D++ + + L + LSGG QR+ +A ++L++ + + D+ +S LD
Sbjct: 115 ERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG--THSKLVEDPEGAY 615
+ +A+ ++ N+ ++V H L + D+I +I G+ G + S +
Sbjct: 175 MNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSKSYAARVGINNF 233
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 9e-09
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
R +I + + L+ K + D Q+ D N + + G+ + ++G +G
Sbjct: 246 RPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVD-NGEAKEGEIIGILGPNG 304
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113
GK+T +L D G +T + +
Sbjct: 305 IGKTTFARILVGEITADEGSVTPEKQILSYKP 336
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKI-RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
V +Y V F+ L + + ++G++G GK+TV+ +L P+ G
Sbjct: 4 EVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK 59
Query: 1106 GVEIQKLQLKWLR-QQMGLVSQEP 1128
+ + LK R +++ +E
Sbjct: 60 VGKDE--VLKRFRGKEIYNYFKEL 81
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 4e-31
Identities = 45/229 (19%), Positives = 101/229 (44%), Gaps = 37/229 (16%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+RD+ Y ++ + +++I G G +G GK+T++ I + P GE+
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIA-----YG--KDDATTEEIRVA 495
+ +G+ + + ++ KI + +E ++ S++D + YG + + +
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
E+ + K + +L S G +R+ +A +L + I +LD+ A+D
Sbjct: 122 VEVLDLKKKLGEL---------------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166
Query: 556 ESEKVVQEALDRIMVNRTTVIVA--HRLSTVRNADMIAVIHRGKIVEKG 602
+S+ V +++ I+ + VI++ LS D+ +H+
Sbjct: 167 DSKHKVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +S Y D V + + I G V G +G GK+T++ + + P G I
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEM 1158
+GV I K ++ ++ + +E ++ ++ + G + EI A E
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 1159 AN 1160
Sbjct: 122 VE 123
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 7e-31
Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 33/246 (13%)
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
R EI T ++ + + + Y + I G +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNI 480
GK+T + ++ +P G++ D ++ Q I + V L + +
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----YIKADYEGTVYELLSKIDASKL 376
Query: 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540
+ E+ + + D+ +LSGG+ QR+AIA +L+D
Sbjct: 377 ---NSNFYKTELLKPLGIID---LYDREVN-----------ELSGGELQRVAIAATLLRD 419
Query: 541 PRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGK 597
I LLDE ++ LD E V A+ +M +T ++V H + + +D + V G+
Sbjct: 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVF-EGE 478
Query: 598 IVEKGT 603
+ G
Sbjct: 479 PGKYGR 484
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-30
Identities = 49/223 (21%), Positives = 90/223 (40%), Gaps = 22/223 (9%)
Query: 406 SISISSGTTAALVGQSGSGKSTVIS-----LIERFYD-PQAGEVLIDGINLKEFQLQWIR 459
+ G +VG +G+GKST + LI + + +I E Q + +
Sbjct: 41 LPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEK 100
Query: 460 ---KKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV 516
+I V + + D I E ++ A E + + L ++ ++
Sbjct: 101 LKNGEIRPVVKPQ--YV----DLIPKAVKGKVIELLKKADETGKLEEVVKAL--ELENVL 152
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
LSGG+ QR+AIA A+L++ DE +S LD A+ R+ +V+
Sbjct: 153 EREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
Query: 577 VA-HRLSTVRN-ADMIAVIHRGKIVEKG--THSKLVEDPEGAY 615
V H L+ + +D+I V++ G+ G + K + +
Sbjct: 213 VVEHDLAVLDYLSDIIHVVY-GEPGVYGIFSQPKGTRNGINEF 254
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 7e-09
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
R +I + + + + + + Y S +I+ G+ + +VG +G
Sbjct: 267 RPYEIKFTKTGERVEIERETLVTYPRLVKDYGSF----RLEVEPGEIKKGEVIGIVGPNG 322
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDG 1106
GK+T V +L +P G I D
Sbjct: 323 IGKTTFVKMLAGVEEPTEGKIEWDL 347
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-06
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 16/99 (16%)
Query: 1047 HVSFKYPSRPDVQVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH---- 1101
+Y F L ++ G V +VG +G+GKST V +L P+
Sbjct: 26 DCVHRYGVNA----FVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS 81
Query: 1102 -----ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTI 1135
G E+Q K ++ V + + D I
Sbjct: 82 WDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ--YVDLI 118
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-30
Identities = 69/241 (28%), Positives = 114/241 (47%), Gaps = 31/241 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE V YP + G S I G L+G SGSGK+T++ LI P G+V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRV--AT 496
I G + + Q ++ +GLV Q LF ++ DN+++G + + RV
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELL 130
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
+ ++ P +LSGGQ+QR+A+ARA+ P++LL DE +A+D +
Sbjct: 131 RFMRLESYANRFP-----------HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
Query: 557 SEKVVQEALDRI--MVNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610
+ ++ + ++ + T+V V H L AD + V+H G + + GT ++ E
Sbjct: 180 IRRELRTFVRQVHDEMGVTSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPEEVYEK 236
Query: 611 P 611
P
Sbjct: 237 P 237
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 1e-13
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE V YP + R ++ +IR G+ V L+G SGSGK+T++ L+ P G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
+ G + L + ++ +GLV Q LF + T+ N+++G
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFG 111
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-30
Identities = 60/231 (25%), Positives = 101/231 (43%), Gaps = 44/231 (19%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + ++ F Y A +F + ++ G A++GQ+G GKST++ L+ + P G++
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYG------------KDDATTE 490
+ + IG V Q F S+ D + G D
Sbjct: 63 EVY-------------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD---- 105
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550
++A A +D L + L T LSGGQ+Q I IARAI + +++LLDE T
Sbjct: 106 -----YQVAMQA--LDYL--NLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPT 156
Query: 551 SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTV-RNADMIAVIHRGKI 598
SALD ++ +V L + N T V H+ + V A+ ++++
Sbjct: 157 SALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 3e-10
Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + ++ F Y + +F+ LN + G +A++G++G GKST++ LL + P G I
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP 1128
+ Q +G V Q
Sbjct: 63 EVY-------------QSIGFVPQFF 75
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 29/244 (11%)
Query: 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSG 422
R EI ++ + +E + Y + I G +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 423 SGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAY 482
GK+T + ++ +P G+V D ++ Q+I+ + E L + +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQYIKAEYEGTVYE--LLSKIDSSKL-- 446
Query: 483 GKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542
+ E+ + + D+ + LSGG+ QR+AIA +L+D
Sbjct: 447 -NSNFYKTELLKPLGIID---LYDRNVE-----------DLSGGELQRVAIAATLLRDAD 491
Query: 543 ILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
I LLDE ++ LD E V A+ +M +T ++V H + + +D + V G+
Sbjct: 492 IYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGEPG 550
Query: 600 EKGT 603
G
Sbjct: 551 RHGR 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 1e-29
Identities = 58/307 (18%), Positives = 105/307 (34%), Gaps = 29/307 (9%)
Query: 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS-----LIERFYD-PQA 440
D Y + G +VG +G+GK+T + LI + +
Sbjct: 95 EDCVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 441 GEVLIDGINLKEFQLQWIRKKIGLVS---QEPVLFTGSIKDNIAYGKDDATTEEIRVATE 497
+ +I E Q + R K G + + + D + E ++ E
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQ--YV----DLLPKAVKGKVRELLKKVDE 205
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ + + +L ++ ++ QLSGG+ QR+AIA A+L+ DE +S LD
Sbjct: 206 VGKFEEVVKEL--ELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQ 263
Query: 558 EKVVQEALDRIMVNRTTVIVA-HRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
V + R+ V+V H L+ + +D+I V++ G+ G P+G
Sbjct: 264 RLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY-GEPGVYGI----FSKPKGTR 318
Query: 616 SQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSIGNSSRHSISVS 675
+ + + + E R EI L S
Sbjct: 319 NGINEFLQGYLKDENV--RFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEP 376
Query: 676 FGLPSGQ 682
+ G+
Sbjct: 377 GEIRKGE 383
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 6e-09
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESG 1081
R +I + S + + + +E + Y S +IR G+ + +VG +G
Sbjct: 337 RPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNG 392
Query: 1082 SGKSTVVSLLQRFYDPDAGHITLDG 1106
GK+T V +L +P G + D
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDL 417
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106
+Y ++ G V +VG +G+GK+T V +L P+
Sbjct: 96 DCVHRYG---VNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 1107 VEI 1109
+
Sbjct: 153 DNV 155
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 31/236 (13%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKST---VISLIERFYDPQ 439
++L++V +Y +++I G +++G SGSGKST +I +++ P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 440 AGEVLIDGIN---LKEFQLQWIR-KKIGLVSQE----PVLFTGSIKDNIA----YGKDDA 487
GEV ID I L + +L IR KIG V Q+ P+L + +N+ + A
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIFKYRGA 115
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHG-TQLSGGQKQRIAIARAILKDPRILLL 546
+ E R + A + ++ H QLSGGQ+QR+AIARA+ +P I+L
Sbjct: 116 MSGEER--RKRALEC--LKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILA 169
Query: 547 DEATSALDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
D+ T ALD+++ + + + L ++ +T V+V H ++ R + I + G++
Sbjct: 170 DQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 14/98 (14%)
Query: 1043 IELHHVSFKYPS-RPDVQVFRDLNLKIRAGKTVALVGESGSGKST---VVSLLQRFYDPD 1098
++L +V+ Y + +++NL I+ G+ V+++G SGSGKST ++ L + P
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PT 58
Query: 1099 AGHITLDGVEIQKL---QLKWLR-QQMGLVSQEPVLFN 1132
G + +D ++ L +L +R ++G V Q+ FN
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ---FN 93
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 21/215 (9%)
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
G S I G L+G +G+GK+T + +I P +G V + G N+ E + +RK I
Sbjct: 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91
Query: 464 LVSQEPVLFTG-SIKDNIA-----YGKDDATTEE-IRVATELANAAKFIDKLPQGIDTLV 516
+ +E + + + Y + EE + ATE+A + I
Sbjct: 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST----- 146
Query: 517 GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
S G +++ IARA++ +PR+ +LDE TS LD + + V++ L + T++
Sbjct: 147 ------YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTIL 200
Query: 577 V-AHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVE 609
V +H + V D IA+IH G IVE GT +L E
Sbjct: 201 VSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 18/122 (14%), Positives = 54/122 (44%), Gaps = 10/122 (8%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ + + + ++ + ++ +I G+ L+G +G+GK+T + ++ P +G +
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIA-----YGKGGDATEAEIQAAS 1156
T+ G + + + +R+ + + +E + + + Y E ++ A+
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 1157 EM 1158
E+
Sbjct: 132 EI 133
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 4e-28
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 28/230 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ ++ +I G S+S+ G +++G SGSGKST++ ++ P G+V
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 444 LIDGIN---LKEFQLQWIR-KKIGLVSQE----PVLFTGSIKDNIA----YGKDDATTEE 491
++G E +L +R +K+G V Q P L + +N+ +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIVPMLKMGKPKKEAK 118
Query: 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551
R + +L G+ + +LSGG++QR+AIARA+ +P +L DE T
Sbjct: 119 ER-------GEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 552 ALDAESEKVVQEALDRI-MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600
LD+ + K V + +I + V+V H + GK+V
Sbjct: 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 2e-10
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ ++ ++ + ++L ++ G+ V+++G SGSGKST++ +L P G +
Sbjct: 5 LRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 1103 TLDGVEIQKL---QLKWLR-QQMGLVSQ 1126
L+G E+ +L LR +++G V Q
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQ 89
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 6e-28
Identities = 64/241 (26%), Positives = 110/241 (45%), Gaps = 34/241 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ + + S+ + SG ++G +G+GK+ + LI F+ P +G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLF---TGSIKDNIAYG---KDDATTEEIRVATE 497
L+DG ++ L + I V Q LF +K N+ +G K + +
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHMN--VKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+D+ P LSGG++QR+A+ARA++ +P+ILLLDE SALD +
Sbjct: 114 DLKIEHLLDRNP-----------LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRT 162
Query: 558 EKVVQEALDRI--MVNRTTVIVAH----RLSTVRNADMIAVIHRGKIVEKGTHSKLVEDP 611
++ +E L + T + + H AD IAV+ GK+++ G ++ E P
Sbjct: 163 QENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEIFEKP 219
Query: 612 E 612
Sbjct: 220 V 220
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-10
Identities = 28/101 (27%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +S K+ +L+LK+ +G+ ++G +G+GK+ + L+ F+ PD+G I
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142
LDG ++ L + + + V Q LF + ++ N+ +G
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFG 96
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 54/234 (23%), Positives = 97/234 (41%), Gaps = 36/234 (15%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L+DV S + +G LVG +G+GKST+++ + G +
Sbjct: 5 MQLQDV-------AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVL-FTGSIKDNIAYGKDDATTEEIRVATELANAA 502
G L+ + + +SQ+ F + + + D T E+ +
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTEL-LNDVAGAL- 114
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-------KDPRILLLDEATSALDA 555
+D +G QLSGG+ QR+ +A +L ++LLLDE ++LD
Sbjct: 115 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 166
Query: 556 ESEKVVQEALDRIMVN-----RTTVIVAHRLS-TVRNADMIAVIHRGKIVEKGT 603
Q ALD+I+ V+ +H L+ T+R+A ++ GK++ G
Sbjct: 167 AQ----QSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 18/146 (12%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L V+ L+ ++RAG+ + LVG +G+GKST+++ + G I
Sbjct: 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVL-FNDTIRANIAYGKGGDATEAEIQAASEMAN- 1160
G ++ L +SQ+ F + + + + +
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116
Query: 1161 ---AHKFICSL-----QQVRTSRLLL 1178
+ L Q+VR + ++L
Sbjct: 117 DDKLGRSTNQLSGGEWQRVRLAAVVL 142
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-25
Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 45/252 (17%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I +++V + + +I+I +G ++G SG+GK+T + +I P GE
Sbjct: 3 RIIVKNVSKVFKKGKVVAL-DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 443 VLIDGINLKEFQLQWIRKK---IGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRV 494
+ D + + + IG+V Q L+ + +NIA+ K RV
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 495 --ATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
++ + ++ P+ +LSG Q+QR+A+ARA++KDP +LLLDE S
Sbjct: 122 EEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 553 LDAE------SE-KVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIV 599
LDA + K VQ L T ++V+H + AD + V+ +GK+V
Sbjct: 171 LDARMRDSARALVKEVQSRL-----GVTLLVVSHDPADIFAI-----ADRVGVLVKGKLV 220
Query: 600 EKGTHSKLVEDP 611
+ G L ++P
Sbjct: 221 QVGKPEDLYDNP 232
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I + +VS + V ++N+ I G+ ++G SG+GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1102 ITLDGVEIQKLQLKWL---RQQMGLVSQEPVLF-NDTIRANIAYG 1142
+ D + + +++G+V Q L+ N T NIA+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 3e-20
Identities = 78/250 (31%), Positives = 122/250 (48%), Gaps = 48/250 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+I+L ++ + N + ++ I G AL+G SGSGKST++ I Y P +G+
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVA 495
+ D + +L + +GLV Q L+ ++ NIA+ K + +V
Sbjct: 60 IYFDEKDVT----ELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR 115
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
AK + ID L+ + QLSGGQ+QR+AIARA++K+P +LLLDE S LDA
Sbjct: 116 ----EVAKML-----HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Query: 556 --------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIVEK 601
E +++ +E + TTV V H + AD IAVI G+I++
Sbjct: 167 LLRLEVRAELKRLQKE------LGITTVYVTHDQAEALAM-----ADRIAVIREGEILQV 215
Query: 602 GTHSKLVEDP 611
GT ++ P
Sbjct: 216 GTPDEVYYKP 225
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
EI+L ++ K+ + ++NLKI+ G+ +AL+G SGSGKST++ + Y P +G
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 1102 ITLDG 1106
I D
Sbjct: 60 IYFDE 64
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 5e-18
Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 48/250 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I + ++ + + G S + G AL+G SG GK+T + ++ Y P +GE
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVA 495
+ D +N + +++G+V Q L+ ++ +NIA+ + E RV
Sbjct: 60 IYFDDVLVN----DIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
A+ + ID L+ TQLSGGQ+QR+A+ARA++K P++LL DE S LDA
Sbjct: 116 ----EIARKL-----LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDA 166
Query: 556 --------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIVEK 601
E + + QE + T+V V H + A IAV ++GK+V+
Sbjct: 167 NLRMIMRAEIKHLQQE------LGITSVYVTHDQAEAMTM-----ASRIAVFNQGKLVQY 215
Query: 602 GTHSKLVEDP 611
GT ++ + P
Sbjct: 216 GTPDEVYDSP 225
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I + ++ KY V+ ++ +++ G+ VAL+G SG GK+T + +L Y P +G
Sbjct: 3 SIRVVNLK-KYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 1102 ITLDG 1106
I D
Sbjct: 60 IYFDD 64
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-17
Identities = 65/252 (25%), Positives = 113/252 (44%), Gaps = 46/252 (18%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+ L DV+ + S+ + G L+G SG GK+T + +I +P G+
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 443 VLIDG--INLKEFQLQWIRKK--IGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIR 493
+ I + E + K I +V Q L+ ++ DNIA+ K + R
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
V A+ + G+ L+ +LSGGQ+QR+A+ RAI++ P++ L+DE S L
Sbjct: 120 VR----EVAELL-----GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 554 DA--------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIV 599
DA E +K+ ++ + TT+ V H + D IAV++RG +
Sbjct: 171 DAKLRVRMRAELKKLQRQ------LGVTTIYVTHDQVEAMTM-----GDRIAVMNRGVLQ 219
Query: 600 EKGTHSKLVEDP 611
+ G+ ++ + P
Sbjct: 220 QVGSPDEVYDKP 231
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+ L V + +V R+++L+++ G+ + L+G SG GK+T + ++ +P G
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 1102 ITLDG 1106
I +
Sbjct: 60 IYIGD 64
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 85.9 bits (212), Expect = 4e-17
Identities = 60/301 (19%), Positives = 113/301 (37%), Gaps = 36/301 (11%)
Query: 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFS 403
++ F + A + E R + +D D+ + +Y A+ + +
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452
Query: 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463
+ + + G +G GKST++ I A +DG +E +
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAI-------ANG-QVDGFPTQE------ECRTV 498
Query: 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523
V + T S + + + + + +L + + I + L
Sbjct: 499 YVEHDID-GTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPI--------SAL 549
Query: 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHR--- 580
SGG K ++A+ARA+L++ ILLLDE T+ LD + + L+ T++ ++H
Sbjct: 550 SGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISHDSVF 607
Query: 581 LSTVRNADMIAVIHRGKIVE-KGTHSKLVED-PE-GAYSQLIRLQEANKESEQTIDGQRK 637
L V + I K+ + KG ++ V+ P AY +L K E K
Sbjct: 608 LDNV--CEYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVK 665
Query: 638 S 638
+
Sbjct: 666 T 666
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 63.9 bits (155), Expect = 3e-10
Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 13/97 (13%)
Query: 522 QLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL 581
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL +I+ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSA 958
Query: 582 STVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
+N + + + G++ G +
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSG----------HNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA 1099
K +++ ++ F+YP D+N + +A++G +G+GKST++++L P +
Sbjct: 669 KAIVKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 1100 GHITL 1104
G +
Sbjct: 728 GEVYT 732
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 18/107 (16%)
Query: 372 TKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL 431
TK K + +++ ++ F YP + + + S + A++G +G+GKST+I++
Sbjct: 666 TKQKAI------VKVTNMEFQYPGTS-KPQITDINFQCSLSSRIAVIGPNGAGKSTLINV 718
Query: 432 IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478
+ P +GEV N +I + Q S D
Sbjct: 719 LTGELLPTSGEVYT-HENC----------RIAYIKQHAFAHIESHLD 754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 5e-17
Identities = 65/250 (26%), Positives = 119/250 (47%), Gaps = 48/250 (19%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+++L ++ + N + +++I G L+G SG GK+T + +I +P G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 443 VLIDG--INLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVA 495
+ + L + I +V Q ++ ++ +NIA+ K + RV
Sbjct: 68 IYFGDRDVT----YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 123
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
AA+ + I+ L+ + QLSGGQ+QR+A+ARAI+ +P +LL+DE S LDA
Sbjct: 124 ----WAAELL-----QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 174
Query: 556 --------ESEKVVQEALDRIMVNRTTVIVAH------RLSTVRNADMIAVIHRGKIVEK 601
E +K+ Q+ + TT+ V H + D IAV++RG++++
Sbjct: 175 KLRVAMRAEIKKLQQK------LKVTTIYVTHDQVEAMTM-----GDRIAVMNRGQLLQI 223
Query: 602 GTHSKLVEDP 611
G+ +++ P
Sbjct: 224 GSPTEVYLRP 233
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E++L +++ ++ + LNL I+ G+ + L+G SG GK+T + ++ +P G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 1102 ITLDG 1106
I
Sbjct: 68 IYFGD 72
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 28/221 (12%)
Query: 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462
G SIS++ G ++G +GSGKST+I++I F G V + ++ + +
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY- 82
Query: 463 GLVS--QEPVLFTG-SIKDNIAYGKDDATT---------------EEIRVATELANAAKF 504
G+V Q P ++ +N+ G+ EE+ A K
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKI 137
Query: 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEA 564
++ L + L +LSGGQ + + I RA++ +P+++++DE + + +
Sbjct: 138 LEFL--KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 195
Query: 565 LDRIMVNRTTV-IVAHRLSTVRN-ADMIAVIHRGKIVEKGT 603
+ + T I+ HRL V N D + V+ G+I+ +G
Sbjct: 196 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+++ + G ++G +GSGKST+++++ F D G + + +I
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNK 74
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-14
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 51/195 (26%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI---ERFYDPQ 439
++L++V ++ + ++ I G VG SG GKST++ +I E
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE---TIT 56
Query: 440 AGEVLIDG--INLKEFQLQWIRKKIGLVSQE----PVLFTGSIKDNIAYG----KDDATT 489
+G++ I +N + +G+V Q P L S+ +N+++G
Sbjct: 57 SGDLFIGEKRMN----DTPPAERGVGMVFQSYALYPHL---SVAENMSFGLKLAGAKK-- 107
Query: 490 EEI--RVATELANAAK------FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
E I RV A+ +D+ P+ LSGGQ+QR+AI R ++ +P
Sbjct: 108 EVINQRVN----QVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEP 152
Query: 542 RILLLDEATSALDAE 556
+ LLDE S LDA
Sbjct: 153 SVFLLDEPLSNLDAA 167
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKST 1086
++L +V+ + +V V +D+NL I G+ V VG SG GKST
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKST 44
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 3e-14
Identities = 60/243 (24%), Positives = 116/243 (47%), Gaps = 34/243 (13%)
Query: 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
E++ ++ Y A G + + G L+G +G+GK+T +S I Q G+++
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 445 IDGINLKEFQLQWI-RKKIGLVSQEPVLFTG-SIKDNI---AYGKDDATTEEIRVATELA 499
+G ++ I R I LV + +F ++ +N+ AY + D + +L
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----GIKRDLE 120
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+L + + L G LSGG++Q +AI RA++ P++L++DE + L +
Sbjct: 121 WIFSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---API 173
Query: 560 VVQEALDRI-MVNR--TTVIVAHRLSTVRNADM---IA----VIHRGKIVEKGTHSKLVE 609
+V E + I +N+ TT+++ +NA +A V+ G+IV +G S+L++
Sbjct: 174 LVSEVFEVIQKINQEGTTILLVE-----QNALGALKVAHYGYVLETGQIVLEGKASELLD 228
Query: 610 DPE 612
+
Sbjct: 229 NEM 231
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 4e-07
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112
+ + ++LK+ G+ V L+G +G+GK+T +S + G I +G +I
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.9 bits (183), Expect = 1e-13
Identities = 93/633 (14%), Positives = 194/633 (30%), Gaps = 187/633 (29%)
Query: 353 AAFKMFETINRKPE---------IDAYDTK---GKILDDIRGDIELRDVYFSYPARP--N 398
++F T+ K E + + K I + R + +Y R +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 399 EQIFSGFSIS--------------ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444
Q+F+ +++S + + G GSGK+ V A +V
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----------ALDVC 171
Query: 445 ID-GINLK-EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
+ + K +F++ W+ + + + + + Y ++ + +
Sbjct: 172 LSYKVQCKMDFKIFWL--NLKNCNSPETVLE--MLQKLLY----------QIDPNWTSRS 217
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD---PRILL-LDEATSALDAESE 558
+ I ++ + + R +LK LL L + ++
Sbjct: 218 DHSSNIKLRIHSI------------QAEL---RRLLKSKPYENCLLVLL------NVQNA 256
Query: 559 KVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
K A + +I++ TT R + + TH L
Sbjct: 257 KAW-NAFNLSCKILL--TT----------RFKQVTDFL----SAATTTHISLDHHSMT-- 297
Query: 616 SQLIRLQEANKESEQ---TIDGQRKSEISMESLRHSSHRMSL-RRSISRGSSIGNSSRH- 670
L E + R ++ E L + R+S+ SI G + ++ +H
Sbjct: 298 -----LTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 671 -------SISVSFGLPSGQFADTALGEPAGPSQPTEEVA--PE---VPTRRLAYL--NKP 716
I S L EPA + + ++ P +PT L+ + +
Sbjct: 351 NCDKLTTIIESSL---------NVL-EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 717 --EIPVILA-----GTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALI--Y 767
++ V++ + + I + + + K +E ++ Y
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV----KLENEYALHRS---IVDHY 453
Query: 768 ---LALGAGSFLLSPAQSYFFAVAGNKL--IQRIRSMCFEKVIHMEVSWFDEP-EHSSGA 821
+ + YF++ G+ L I+ M +++ ++ + ++ H S A
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 822 IGARLSADAASVRALVGDA---LARIVQNIST--AAAGLIIAFTASWQLALIILVMLPLI 876
A S+ + I N I+ F + LI
Sbjct: 514 WNAS-----GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC------- 561
Query: 877 GVSGYT---QMKFMKGFSADAKMKYEEA-SQVA 905
S YT ++ M A+ + +EEA QV
Sbjct: 562 --SKYTDLLRIALM----AEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 1e-09
Identities = 83/629 (13%), Positives = 189/629 (30%), Gaps = 209/629 (33%)
Query: 242 AASVVEQTIGSIRTVASFTGEKQAMSN----YKKFLVTAYK--SGVQEGL-----AAGIG 290
+ + + + ++ + N + K+ V+ + +++ L A +
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 291 L-GMVMLIVFCSYALSVWYG-GKLILEEGYNGGQVVNVM--VAVLTGS------MSLGEA 340
+ G++ G GK + ++V V ++L
Sbjct: 155 IDGVL--------------GSGKTWV--------ALDVCLSYKVQCKMDFKIFWLNLKN- 191
Query: 341 SPCLSAFGAGQAAAFKMFETINRKPEIDA-YDTKGKILDDIRGDIE-------------- 385
C S +M + + + ID + ++ +I+ I
Sbjct: 192 --CNSP-----ETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 386 -------LRDVYFSYPARPNEQIFSGFSIS----ISSGTT--AALVGQSGSGKSTVISLI 432
L +V N + ++ F++S + TT + + +T ISL
Sbjct: 243 YENCLLVLLNVQ-------NAKAWNAFNLSCKILL---TTRFKQVTDFLSAATTTHISLD 292
Query: 433 ER---FYDPQAGEVLIDGINLKEFQLQWIRKKIG--LVSQEPVLFTGSIKDNIAYGKDDA 487
+ +L+ ++ + L +S + SI+D +A
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLA------ 342
Query: 488 TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD----PRI 543
T + + DKL I++ + L + +++ ++ P I
Sbjct: 343 TWDNWKHVN--------CDKLTTIIESSL----NVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 544 LLLDEATSAL-----DAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIH---- 594
LL S + ++ VV + +V + + + I
Sbjct: 391 LL-----SLIWFDVIKSDVMVVVNKLHKYSLVEK------------QPKESTISIPSIYL 433
Query: 595 --RGKIVEKGT-HSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEIS--MESLRHSS 649
+ K+ + H +V+ Y + + +++ +D S I ++++ H
Sbjct: 434 ELKVKLENEYALHRSIVD----HY-NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH-P 487
Query: 650 HRMSLRRSISRGSS-IGNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTR 708
RM+L R + + RH TA + +
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHD-------------STAWNASGS-------ILNTLQQL 527
Query: 709 RL--AYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALI 766
+ Y+ + P Y L++++++ K L S++ L+
Sbjct: 528 KFYKPYICDND------------------PKYERLVNAILDFLPKIEENLIC-SKYTDLL 568
Query: 767 YLALGAGSFLLSPAQSYFFAVAGNKLIQR 795
+A L F A +K +QR
Sbjct: 569 RIA-------LMAEDEAIFEEA-HKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 7e-07
Identities = 24/135 (17%), Positives = 44/135 (32%), Gaps = 13/135 (9%)
Query: 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYP-SRPD-VQVFRDLNLKIRAGKTVALVGE 1079
+ + PS + +E + V KY SR R L++R K V + G
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 1080 SGSGKSTVV-------SLLQRFYDP----DAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128
GSGK+ V + + + + ++ LQ + S+
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 1129 VLFNDTIRANIAYGK 1143
N +R + +
Sbjct: 219 HSSNIKLRIHSIQAE 233
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 3e-06
Identities = 83/616 (13%), Positives = 167/616 (27%), Gaps = 187/616 (30%)
Query: 12 ASKSQEEVGKDSSMSGNEHDSEKGK-----QTEKTESVPFYKLFTFADSADTALM----- 61
S + E + SM + ++ + Q +V + + AL+
Sbjct: 95 MSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL---KLRQALLELRPA 150
Query: 62 -IIGSIGAIGNG-LCLPLMTLLFGDLINTFGD-----NQNNSETVDKVSKVAVKFVYLGI 114
+ G +G+G + L L + N N + + V ++ K +Y
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210
Query: 115 GSGIASFLQVTCWMITGERQATRIRGLYLKT-------ILRQDV------AFFDNE---- 157
+ + + + +R L +L +V F+
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-NVQNAKAWNAFNLSCKIL 269
Query: 158 --TNTGEVVGRMSGDTV----LIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVML 211
T +V +S T L +M + L+ +L + L +L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD------CRPQDLPREVL 323
Query: 212 SSIPL-LAMSGGVMAIMISKMSSRGQG----AYAKAASVVEQTIGSIRTVASFTGEKQAM 266
++ P L++ +A I + K +++E ++ + E + M
Sbjct: 324 TTNPRRLSI----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRKM 374
Query: 267 SNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNV 326
+ + V + + I+ W+ VVN
Sbjct: 375 --FDRLSV--FPPSAH-----------IPTILLSLI----WFDVIKSDVM-----VVVNK 410
Query: 327 MVAVLTGSMSLGEASPCLSAFG--AGQAAAFKMFETINRKPE-----IDAYD-TKGKILD 378
+ SL E P S + ++ + + +D Y+ K D
Sbjct: 411 LH-----KYSLVEKQPKESTISIPSIY---LELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 379 DIRGDIELRDVYF-SYPAR-----PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI 432
D+ D YF S+ + + + F
Sbjct: 463 DLIPPYL--DQYFYSHIGHHLKNIEHPERMTLFR-------------------------- 494
Query: 433 ERFYDPQAGEVLIDGINLKEFQLQWIRKKI---GLVSQEPVLFTGSIKDNIAYGK---DD 486
V +D +++ +KI +++ Y D+
Sbjct: 495 ---------MVFLD--------FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLL 546
E V +D LP+ L + + RI L+
Sbjct: 538 DPKYERLVNA-------ILDFLPK--------IEENLICSKYTDLL---------RIALM 573
Query: 547 DEATSALDAESEKVVQ 562
E A+ E+ K VQ
Sbjct: 574 AE-DEAIFEEAHKQVQ 588
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 3e-09
Identities = 33/187 (17%), Positives = 66/187 (35%), Gaps = 22/187 (11%)
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTE 490
++ + E ++ + + I V + L + I + +E
Sbjct: 156 VVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIG----ELASE 211
Query: 491 EIRVATELANAAKFIDKLPQGIDTLVGEHG-----TQLSGGQKQ------RIAIARAILK 539
TE + + + V G T LSGG++ R+A++ +
Sbjct: 212 IFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAG 271
Query: 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVA-HRLSTVRNADMIAVI----- 593
+ +L+LDE T LD E + + ++R + VI+ H AD + I
Sbjct: 272 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENG 331
Query: 594 -HRGKIV 599
+ ++V
Sbjct: 332 SSKVEVV 338
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 8e-09
Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 43/230 (18%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI---ERFYDPQAGEVLIDGINLKEFQ 454
E I G ++ + G AL+G +G+GKST+ ++ Y + GE+L+DG N+ E
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPE-YTVERGEILLDGENILELS 73
Query: 455 LQWIRKKIG--LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT-----ELANAAKFIDK 507
R + G L Q PV G +R+A A+F K
Sbjct: 74 PD-ERARKGLFLAFQYPVEVPGV-----------TIANFLRLALQAKLGREVGVAEFWTK 121
Query: 508 LPQGIDTL------------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
+ + ++ L G SGG+K+R I + ++ +P +LDE S LD
Sbjct: 122 VKKALELLDWDESYLSRYLNEG-----FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDI 176
Query: 556 ESEKVVQEALDRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKG 602
++ KVV ++ + N +++ H R+ D + V+ G++V G
Sbjct: 177 DALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQKL 1112
+ + +NL + G+ AL+G +G+GKST+ +L Y + G I LDG I +L
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILEL 72
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 3e-08
Identities = 59/231 (25%), Positives = 103/231 (44%), Gaps = 35/231 (15%)
Query: 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI---ERFYDPQAGEVLIDGINLKEFQ 454
++ I G S+ + G A++G +GSGKST+ + + E Y+ G V G +L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRED-YEVTGGTVEFKGKDLLALS 90
Query: 455 LQWIRKKIG--LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA--NAAKFIDKLP 509
+ R G + Q PV G S + + +R + F D +
Sbjct: 91 PE-DRAGEGIFMAFQYPVEIPGVSNQFFLQ-----TALNAVRSYRGQETLDRFDFQDLME 144
Query: 510 QGIDTL------------VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
+ I L VG SGG+K+R I + + +P + +LDE+ S LD ++
Sbjct: 145 EKIALLKMPEDLLTRSVNVG-----FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 199
Query: 558 EKVVQEALDRIMV-NRTTVIVAH--RLSTVRNADMIAVIHRGKIVEKGTHS 605
KVV + ++ + R+ +IV H R+ D + V+++G+IV+ G +
Sbjct: 200 LKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 250
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDAGHITLDGVEIQKL 1112
D + R L+L + G+ A++G +GSGKST+ + L + Y+ G + G ++ L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 4e-08
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 521 TQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
T LSGG++ + +A + + +L+LDE T LD E + + ++R +
Sbjct: 56 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQ 115
Query: 575 VIV-AHRLSTVRNADMI------AVIHRGKIV 599
VI+ +H AD + + ++V
Sbjct: 116 VILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 522 QLSGGQKQRIAIARAI-------LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTT 574
LSGG++ +A++ + ++LDE T LD + E ++
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 575 VIVAHRLSTVRNADMIAVIHRGK 597
+I+ H AD+I + +
Sbjct: 340 IIITHHRELEDVADVIINVKKDG 362
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1178 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.98 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.98 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.94 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.94 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.94 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.94 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.94 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.93 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.93 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.92 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.92 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.91 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.9 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.88 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.88 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.87 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.87 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.86 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.86 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.86 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.86 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.86 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.86 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.85 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.85 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.85 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.85 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.85 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.85 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.84 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.84 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.84 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.84 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.84 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.83 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.83 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.83 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.83 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.83 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.82 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.82 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.82 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.82 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.81 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.81 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.81 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.81 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.81 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.79 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.79 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.78 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.78 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.78 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.77 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.77 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.77 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.75 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.74 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.74 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.72 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.71 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.71 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.7 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.7 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.7 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.69 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.67 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.67 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.67 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.64 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.64 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.64 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.62 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.61 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.61 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.61 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.61 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.6 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.59 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.58 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.56 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.55 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.54 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.54 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.53 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.52 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.52 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.52 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.51 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.49 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.47 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.47 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.44 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.43 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.42 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.39 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.39 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.38 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.38 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.37 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.37 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.37 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.37 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.35 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.33 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.32 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.3 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.28 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.28 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.27 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.24 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.23 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.19 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.19 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.17 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.16 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.16 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.16 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.16 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.15 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.15 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.14 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.13 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.13 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 99.1 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.1 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.1 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.09 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.09 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.08 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.08 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.08 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.07 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.07 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.04 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.01 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.0 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.0 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.97 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.97 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.96 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.93 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.93 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.89 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.88 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.87 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.85 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.84 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.83 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.83 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.83 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.82 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.81 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.8 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.79 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.78 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.78 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.78 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.78 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.77 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.75 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.75 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.75 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.73 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.73 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.72 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.72 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.71 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.71 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.71 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.7 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.69 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.68 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.64 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.63 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.61 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.6 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.6 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.59 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.59 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.57 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.56 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.56 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.55 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.54 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.54 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.54 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.53 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.52 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.51 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.5 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.5 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.48 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.48 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.48 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.47 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.47 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.44 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.43 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.42 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.42 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.41 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.39 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.37 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.35 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.35 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.34 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.33 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.28 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.28 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.28 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.27 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.27 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.23 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.23 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.23 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.2 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.2 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.18 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.17 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.17 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.16 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.15 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.15 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.14 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.1 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.06 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.06 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.04 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.04 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.03 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.03 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.03 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.03 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.02 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.0 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.98 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.97 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.96 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.94 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.92 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.9 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.88 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.86 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.86 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.8 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.78 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 97.75 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.74 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.72 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.7 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.68 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.65 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.65 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.64 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.63 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.59 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.59 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.57 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.54 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.53 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.52 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.5 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.49 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.49 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.47 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.47 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.46 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.45 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.41 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.37 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.37 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.36 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.36 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.34 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 97.32 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.28 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.28 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.27 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.27 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.26 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.24 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.23 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.23 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.22 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.22 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.19 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.16 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.14 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.13 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.12 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.07 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.05 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.04 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.02 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.0 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.99 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.99 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.96 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.95 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.92 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.92 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.92 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.91 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.9 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.9 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.88 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 96.85 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.84 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.8 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.8 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.78 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.78 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.77 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.77 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.76 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.75 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.74 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.72 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.71 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.71 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.71 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.7 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.68 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.66 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.66 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 96.65 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.64 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.6 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.6 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.53 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.5 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.5 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.5 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.49 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.49 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.47 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.43 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.42 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.41 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.4 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.4 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.39 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.36 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.34 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.32 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.3 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.27 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.24 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.23 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.2 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.17 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.16 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.14 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.12 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.11 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.06 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 95.96 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.93 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 95.87 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.81 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.78 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.77 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.77 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.77 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.73 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.72 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 95.71 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.67 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 95.64 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 95.62 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.61 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.59 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 95.58 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.58 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.56 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.54 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.54 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.53 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.51 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.49 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.44 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.4 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.38 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.38 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.37 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 95.36 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.35 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 95.35 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.29 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.26 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.19 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.17 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.17 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.16 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.16 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.15 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.15 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.08 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.06 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.02 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.01 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.97 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 94.97 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 94.97 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 94.92 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 94.88 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 94.86 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.83 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 94.83 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.81 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 94.81 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 94.81 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 94.79 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 94.76 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 94.73 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 94.72 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 94.7 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 94.67 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 94.66 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 94.66 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 94.6 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 94.57 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.56 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 94.54 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 94.52 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 94.5 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.48 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-163 Score=1620.58 Aligned_cols=1129 Identities=34% Similarity=0.608 Sum_probs=960.7
Q ss_pred cccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-----------------CCchhhHHHHH
Q 001041 41 TESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDN-----------------QNNSETVDKVS 103 (1178)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~ 103 (1178)
..+++++++|+|+.++++.+++++++++++.++..|++++++|++++.+... .....+.+...
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred cCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHH
Confidence 3468899999999999999999999999999999999999999988865321 01123334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHH
Q 001041 104 KVAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVG 183 (1178)
Q Consensus 104 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~ 183 (1178)
.+++++++++++.+++.|++.+++.+.+.|...++|.+++++++++|++|||+. ++|++++|+++|++.+++.+...+.
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l~ 215 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIG 215 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888899999999999999999999999999999999999999999984 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHH
Q 001041 184 KFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEK 263 (1178)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 263 (1178)
.++..+..+++.++++++++|.+++++++.+|+++++..++.+..++..++.++..+++.+.+.|.++|+++||+|++|+
T Consensus 216 ~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 295 (1321)
T 4f4c_A 216 MAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLR 295 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 264 QAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPC 343 (1178)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 343 (1178)
.+.++|.+...+..+...+.....++......++..+.+++.+|+|..++..+.++.+.+++++.++.....++..+.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~ 375 (1321)
T 4f4c_A 296 YELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQ 375 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888887777888888888999999999999999999999988888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 001041 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1178)
Q Consensus 344 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1178)
+..+..+..++.|++++++.+|+.+........+.+.+|.|+|+||+|+||+++++++|+|+||+|++||+++|||||||
T Consensus 376 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 455 (1321)
T 4f4c_A 376 LAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGC 455 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCC
Confidence 99999999999999999998776554333333444567889999999999987778999999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHH
Q 001041 424 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503 (1178)
Q Consensus 424 GKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~ 503 (1178)
|||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||+||||++||||||.||.|++++++++++|+.|++++
T Consensus 456 GKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~ 535 (1321)
T 4f4c_A 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535 (1321)
T ss_dssp CHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 504 ~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
+++.||+|++|.|||+|.+||||||||||||||+|++|+||||||||||||+++++.++++++++.++||+|+||||+++
T Consensus 536 ~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp HHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred HHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCC
Q 001041 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSS 663 (1178)
Q Consensus 584 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1178)
+++||+|+||++|+|+|+|+|+||+++ ++.|+++++.|......+...+.....+.. ......+.....+..+....
T Consensus 616 i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 692 (1321)
T 4f4c_A 616 IRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENS--VARQTSEHEGLSRQASEMDD 692 (1321)
T ss_dssp TTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred HHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhhcccccccccccccccccc--cccccccccccccccccccc
Confidence 999999999999999999999999997 799999998775433221111000000000 00000000000000000000
Q ss_pred CCCCCCcccccccCCCCCCCCcccCCCCCCC-------CCCCCCCCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHH
Q 001041 664 IGNSSRHSISVSFGLPSGQFADTALGEPAGP-------SQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILP 736 (1178)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1178)
. ..... ..........+........... ...++.......+++++++.+++++.++++++++++.++..+
T Consensus 693 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~ 769 (1321)
T 4f4c_A 693 I--MNRVR-SSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYP 769 (1321)
T ss_dssp --------------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHH
T ss_pred h--hhhhh-ccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 0000000000000000000000 000011112234556667778888888888888888888899
Q ss_pred HHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCC
Q 001041 737 IYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPE 816 (1178)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~ 816 (1178)
.+++++..+++.+...+........+|.++|++++++..++.+++.+++...+.++.+++|.++|++++++|++|||.++
T Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~ 849 (1321)
T 4f4c_A 770 TYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQ 849 (1321)
T ss_dssp HHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGG
T ss_pred HHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCC
Confidence 99999999888776544333344567888888899999999999999999999999999999999999999999999767
Q ss_pred CChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 001041 817 HSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKM 896 (1178)
Q Consensus 817 ~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~ 896 (1178)
+++|+|+||+++|++.++..++..+..++..++.++++++++++++|++++++++++|+++++.+++.++.+....+.++
T Consensus 850 ~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1321)
T 4f4c_A 850 NASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSAS 929 (1321)
T ss_dssp GCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSS
T ss_pred CChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998888888777776777777
Q ss_pred HHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 001041 897 KYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGK 976 (1178)
Q Consensus 897 ~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ 976 (1178)
..++....+.|+++|+++||+|++|+++.++|.+..+...+...+.....+...++...+..+..++++++|..++..+.
T Consensus 930 ~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~ 1009 (1321)
T 4f4c_A 930 EFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDP 1009 (1321)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSS
T ss_pred HHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Confidence 78888899999999999999999999999999999999999999988888888888888888888999999999998887
Q ss_pred CCHHH--HHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCC
Q 001041 977 ATFSD--VFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054 (1178)
Q Consensus 977 ~t~g~--l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~ 1054 (1178)
.+.+. ++.++.++.....++..+..+...++++..+++|++++++.+++.+.... +...++..|+|+|+||+|+||+
T Consensus 1010 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~-~~~~~~~~g~I~f~nVsf~Y~~ 1088 (1321)
T 4f4c_A 1010 PTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSL-AGEKKKLYGKVIFKNVRFAYPE 1088 (1321)
T ss_dssp CSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCC-CSBCCCCCCCEEEEEEEECCTT
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccC-CCCCCCCCCeEEEEEEEEeCCC
Confidence 66554 44444455555667778888888999999999999999998877644322 2334556899999999999998
Q ss_pred CCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccccccccc
Q 001041 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1178)
Q Consensus 1055 ~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1178)
+++.|||+||||+|+|||+||||||||||||||+++|+|||||++|+|+|||+||+++++++||++|++|||||+||+||
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gT 1168 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCS 1168 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEE
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCcc
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1135 IRANIAYGK-GGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1135 IreNI~~g~-~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|||||+||. ++++||||||+||+.|++||||++||+||||+|+
T Consensus 1169 IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999984 3579999999999999999999999999999985
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-143 Score=1418.85 Aligned_cols=1118 Identities=40% Similarity=0.694 Sum_probs=943.6
Q ss_pred cccchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-------Cc---------hhhHHHHHH
Q 001041 41 TESVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQ-------NN---------SETVDKVSK 104 (1178)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---------~~~~~~~~~ 104 (1178)
...++++++++|.++.++.+++++++++++.+++.|+++++++.+++.+.... .. .........
T Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (1284)
T 3g5u_A 30 KPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTT 109 (1284)
T ss_dssp ---CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHH
Confidence 34567889999988888888889999999999999999999999888754210 00 001123344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHH
Q 001041 105 VAVKFVYLGIGSGIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGK 184 (1178)
Q Consensus 105 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~ 184 (1178)
+.+++++++++.+++.+++.+++.+.+.+...++|.+++++++++|++|||+ +++|+++||+++|++.+++.++..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~-~~~G~l~sr~~~D~~~i~~~~~~~~~~ 188 (1284)
T 3g5u_A 110 YAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV-HDVGELNTRLTDDVSKINEGIGDKIGM 188 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHS-CCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcc-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777888888999999999999999999999999999999999999997 499999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHH
Q 001041 185 FLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQ 264 (1178)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 264 (1178)
++..+..+++.++++++++|.+++++++++|+++++..++.+..++..++.++..++..+.+.|+++|+++||+|++|+.
T Consensus 189 ~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~ 268 (1284)
T 3g5u_A 189 FFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKK 268 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 265 AMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCL 344 (1178)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ 344 (1178)
+.++|.+..++..+...+.....++..++..++..+.+++.+|+|+.++..+.++.|.+++++.+.+....++..+.+.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 348 (1284)
T 3g5u_A 269 ELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNI 348 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777777777777777778888889999999999999999998877777666677888888888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCc
Q 001041 345 SAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSG 424 (1178)
Q Consensus 345 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsG 424 (1178)
..+..+..++.|++++++.+++.++.......+++..|.|+++||+|+|+++++.++|+|+||+|++||+++||||||||
T Consensus 349 ~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsG 428 (1284)
T 3g5u_A 349 EAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCG 428 (1284)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCC
Confidence 99999999999999999887664432222223334568899999999998665568999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHH
Q 001041 425 KSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKF 504 (1178)
Q Consensus 425 KStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~ 504 (1178)
||||+++|+|+++|++|+|.+||+|+++++++++|++|+||||+|++|++||+|||.+|.++.++++++++++.++++++
T Consensus 429 KSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~ 508 (1284)
T 3g5u_A 429 KSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDF 508 (1284)
T ss_dssp HHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999999999999
Q ss_pred HHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 505 IDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 505 i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
+..+|+|++|.+|++|.+||||||||||||||++++|+|||||||||+||+++++.+++.++...+++|+|+||||++++
T Consensus 509 i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i 588 (1284)
T 3g5u_A 509 IMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTV 588 (1284)
T ss_dssp HHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHH
T ss_pred HHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhhcccchhccccccccchhhhhhhcccccccccccccCCCCC
Q 001041 585 RNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSSHRMSLRRSISRGSSI 664 (1178)
Q Consensus 585 ~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1178)
..||+|+||++|+|+|.|+|+||+++ ++.|.+++..+....+.+........ ....... . ....... ..
T Consensus 589 ~~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~------~~~~~~~-~~- 657 (1284)
T 3g5u_A 589 RNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKS-KDEIDNL-D------MSSKDSG-SS- 657 (1284)
T ss_dssp TTCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC-----------------------------------------
T ss_pred HcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhhhccccccccccccc-ccccccc-c------ccccccc-cc-
Confidence 99999999999999999999999987 67888887655332211100000000 0000000 0 0000000 00
Q ss_pred CCCCCcccccccCCCCCCCCcccCCCCCCCCCCCCCCCCcchhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 665 GNSSRHSISVSFGLPSGQFADTALGEPAGPSQPTEEVAPEVPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISS 744 (1178)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 744 (1178)
........... . ....... . .......++......+++++.+.+++++.++++++++++.+++.+.+++++..
T Consensus 658 -~~~~~~~~~~~--~--~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 730 (1284)
T 3g5u_A 658 -LIRRRSTRKSI--C--GPHDQDR-K-LSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSK 730 (1284)
T ss_dssp ---------------------------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccccccccccc--c--ccccccc-c-cchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 0 0000000 0 00000001111122344455555666777777888888888888888888888
Q ss_pred HHHhhcCCCc--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhH
Q 001041 745 VIETFFKPPH--ELKKDSRFWALIYLALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822 (1178)
Q Consensus 745 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i 822 (1178)
+++.+..... ........|.+++++++++..++.+++.+++...+.++..++|.++|++++++|++|||++++++|+|
T Consensus 731 ~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l 810 (1284)
T 3g5u_A 731 VVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810 (1284)
T ss_dssp HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHH
T ss_pred HHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHH
Confidence 8876653321 12223455677788888888889999999999999999999999999999999999999777999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 001041 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEAS 902 (1178)
Q Consensus 823 ~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (1178)
++|+++|++.++..++..+..++..++.+++++++++.++|++++++++++|+++++.++..+++++...+.++..+...
T Consensus 811 ~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1284)
T 3g5u_A 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSG 890 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888888899
Q ss_pred HHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 001041 903 QVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDV 982 (1178)
Q Consensus 903 ~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l 982 (1178)
..+.|+++|+++||+|++|+++.++|.+..+...+...+.....+...++...+..+..++++|+|++++..|.++++.+
T Consensus 891 ~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~ 970 (1284)
T 3g5u_A 891 KIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV 970 (1284)
T ss_dssp HHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHH
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccc
Q 001041 983 FKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFR 1062 (1178)
Q Consensus 983 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~ 1062 (1178)
+.++.++.....++..+..+...++++..+++|+.++++.+++.+........+++..|.|+|+||+|+|+++++.++|+
T Consensus 971 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~ 1050 (1284)
T 3g5u_A 971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQ 1050 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeec
Confidence 99999999999999999999999999999999999999987765432222222334578999999999998655557999
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcC
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g 1142 (1178)
||||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++++++|++|++|||||.||++||+|||++|
T Consensus 1051 ~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~ 1130 (1284)
T 3g5u_A 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYG 1130 (1284)
T ss_dssp SCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCC
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1143 KG-GDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1143 ~~-~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
.+ ...+++++++|++.+++++|+.++|+||||.|+
T Consensus 1131 ~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp CSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccC
Confidence 54 247899999999999999999999999999985
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-86 Score=877.07 Aligned_cols=576 Identities=34% Similarity=0.575 Sum_probs=482.7
Q ss_pred cchHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 43 SVPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 122 (1178)
+.++++++++.++. +..++++++++++.+.+.|.++++++.+++.+..... +.......+.+.|++++++..++.++
T Consensus 737 ~~~~~~~~~~~~~~-~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~i~~~~ 813 (1321)
T 4f4c_A 737 KTNLFEILYHARPH-ALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPA--DFLSQGHFWALMFLVLAAAQGICSFL 813 (1321)
T ss_dssp CCCHHHHHHHTGGG-HHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSS--TTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666655443 4556677777888888899999999998887654321 12223344566677788888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFI 201 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1178)
..+++.+.+.++..++|.+++++++++|++|||. .+++|+++||+++|++.+++.++..+..++..+..+++.++++++
T Consensus 814 ~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~ 893 (1321)
T 4f4c_A 814 MTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFF 893 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehH
Confidence 9999999999999999999999999999999985 248999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Q 001041 202 KGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGV 281 (1178)
Q Consensus 202 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 281 (1178)
++|.+++++++++|++++...++.+...+...+..+..++....+.|+++|+++||+|++|+.+.+++.+..+...+...
T Consensus 894 ~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~ 973 (1321)
T 4f4c_A 894 YGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAI 973 (1321)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988777766665555555556677788889999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 282 QEGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGG--QVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359 (1178)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~ 359 (1178)
+.....++...+...+..+..++.+++|..++..+..+.+ .++.++.+......++..+......+..+..+++|+++
T Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~ 1053 (1321)
T 4f4c_A 974 KEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFG 1053 (1321)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766666666666666777888877766655433 33333322222223455566677888899999999999
Q ss_pred HhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 360 TINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
.++.+++.+... ...+.++..|.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|+
T Consensus 1054 ~l~~~~~~~~~~-~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~ 1132 (1321)
T 4f4c_A 1054 MLRKISKIDSLS-LAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL 1132 (1321)
T ss_dssp HHHCCCSSCTTC-CCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS
T ss_pred HhhCcccCCCcc-CCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC
Confidence 998877654332 2233455678999999999999877778999999999999999999999999999999999999999
Q ss_pred CCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC--CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhc
Q 001041 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK--DDATTEEIRVATELANAAKFIDKLPQGIDTLVG 517 (1178)
Q Consensus 440 ~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~ 517 (1178)
+|+|.|||+|+++++++++|++|+||||||+||+|||||||.||. +++++++++++|+.++++++|+++|+|+||.||
T Consensus 1133 ~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vg 1212 (1321)
T 4f4c_A 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212 (1321)
T ss_dssp SSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEET
T ss_pred CCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEec
Confidence 999999999999999999999999999999999999999999984 468899999999999999999999999999999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
|+|.+||||||||||||||++++|+|||||||||+||++|++.|+++|++.+++||+|+||||++++.+||+|+|||+|+
T Consensus 1213 e~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~ 1292 (1321)
T 4f4c_A 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292 (1321)
T ss_dssp TTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSS
T ss_pred CCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhHHhcCCCchHHHHHHHHh
Q 001041 598 IVEKGTHSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 598 i~~~g~~~~l~~~~~~~~~~~~~~~~ 623 (1178)
|+|+|+|+||+++ ++.|++|++.|.
T Consensus 1293 IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1293 IIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp EEEEECHHHHHHC-C-----------
T ss_pred EEEECCHHHHHhC-CcHHHHHHHHHH
Confidence 9999999999998 788999998664
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-80 Score=763.94 Aligned_cols=568 Identities=25% Similarity=0.396 Sum_probs=493.2
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.+++|.++.. ..+++++++.++..++....|++++.++|......+. .....+.+.+++++++..++.++..+
T Consensus 11 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (587)
T 3qf4_A 11 SKTLARYLKPYW-IFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDF----SLVLKTGILMLIVALIGAVGGIGCTV 85 (587)
T ss_dssp CCCGGGGTGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555655543 3445566666777777788888999999876432221 22233344445555666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
+..+.+.+...++|.++++++++.|+.+|++. ++|+++||+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 86 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 86 FASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999974 99999999999999999999988888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888899988888888889999999999999999999999999999999999998888877777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..+.......++..+..++.+++|++++..+.++.+.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 66666666666666667777888999999999999999888877777777888888888889999999999999998766
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+... .....++..+.|+++||+|+|+++ ++++|+|+||++++||+++||||||||||||+++|+|+++|++|+|.+
T Consensus 325 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 325 AIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp SCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred ccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 533221 111223345789999999999753 467999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
||+|+++++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChh
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 605 (1178)
|||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||++++..||+|++|++|+|++.|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHH
Q 001041 606 KLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 606 ~l~~~~~~~~~~~~~~~ 622 (1178)
|++++ ++.|.+++..+
T Consensus 563 el~~~-~~~~~~~~~~~ 578 (587)
T 3qf4_A 563 ELLEH-CKPYREIYESQ 578 (587)
T ss_dssp HHHHH-CHHHHHHHHHH
T ss_pred HHHhC-CcHHHHHHHHH
Confidence 99986 67888888755
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-80 Score=763.06 Aligned_cols=569 Identities=29% Similarity=0.491 Sum_probs=498.9
Q ss_pred chHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1178)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1178)
..++++++|+++.+ ..+++++++.++.+++....|++++.++|......+. .....+.+.++++.++..++.+++
T Consensus 23 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 97 (598)
T 3qf4_B 23 ATLRRLLGYLRPHT-FTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF----DLLPRYMLILGTIYALTSLLFWLQ 97 (598)
T ss_dssp HHHHHHGGGTGGGH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG----GGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777776643 3455566667777777888888999999976543221 223334445556666777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001041 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKG 203 (1178)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1178)
.++..+.+.++..++|.++++++++.|+.+|++. ++|+++||+++|++.+++.+...+..++..+..+++.+++++.++
T Consensus 98 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 98 GKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHS-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999974 999999999999999999999888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Q 001041 204 WLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQE 283 (1178)
Q Consensus 204 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 283 (1178)
|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998889999988888888999999999999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 001041 284 GLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINR 363 (1178)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~ 363 (1178)
....++...+..++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77766666666666666777778889998889999999988877666666677888888889999999999999999987
Q ss_pred CCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 364 KPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
+++.+... ..+.++..+.|+++||+|+|++ ++++|+|+||++++||+++||||||||||||+++|+|+++|++|+|
T Consensus 337 ~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i 412 (598)
T 3qf4_B 337 EEEKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412 (598)
T ss_dssp CCCCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred CCCCCCCC--CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence 66532211 1222344678999999999964 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCC
Q 001041 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQL 523 (1178)
Q Consensus 444 ~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~l 523 (1178)
.+||+|+++++.+++|++|+||||+|++|++||+|||.++.+..++++++++++.++++++++.+|+|++|.+|++|.+|
T Consensus 413 ~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp EETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred EECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
|||||||++||||++++|+|||||||||+||+++++.+++.++++.+++|+|+||||++++..||+|++|++|+|++.|+
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCchHHHHHHHHh
Q 001041 604 HSKLVEDPEGAYSQLIRLQE 623 (1178)
Q Consensus 604 ~~~l~~~~~~~~~~~~~~~~ 623 (1178)
|+|++++ ++.|++++..+.
T Consensus 573 ~~~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 573 HDELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp HHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHh
Confidence 9999987 688999887654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-80 Score=756.60 Aligned_cols=569 Identities=31% Similarity=0.422 Sum_probs=491.6
Q ss_pred HHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHH----HHHHHHHHHHHHHHHHHHHH
Q 001041 47 YKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKV----SKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~ 122 (1178)
+++++|.++..+ .+++++++.++..++.+..|++++.++|......... ..... ..+...++++.++..++.++
T Consensus 3 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 3 KRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT-TDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCC-HHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655443 3445556666666677777888899988765432210 01111 22233344455566677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
+.+...+.+.++..++|.++++++++.|+++|++. ++|++++|+++|++.+++.+...+..++..+..+++.+++++.+
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999974 99999999999999999998877777778888888888899999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
+|.+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+...+..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888899999998888899999999999999999999999999999999999999888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
...+.+....+..++..+..++.+++|++++..+.++.|.+++++.++.....++..+...+..+..+..+++|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777777766666666677777888999999999999999888777777777888888889999999999999999998
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.+++.+... ...+.++..+.|+++||+|+|++. ++++|+|+||++++||+++||||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 766543221 112223345789999999999753 457999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQ 522 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~ 522 (1178)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.+..++++++++++.++++++++.+|+|++|.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEec
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
||||||||++||||++++|+++|||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|+|++.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCchHHHHHHH
Q 001041 603 THSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|+|+++. ++.|.++++.
T Consensus 558 ~~~el~~~-~~~~~~~~~~ 575 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSI 575 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTT
T ss_pred CHHHHHhC-CcHHHHHHHh
Confidence 99999987 6788888753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-77 Score=733.01 Aligned_cols=566 Identities=31% Similarity=0.499 Sum_probs=490.1
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.++++.++.. ..+++++++.++.+++.+..+++++.+++......+. .......+.+++++++..++.++..+
T Consensus 13 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 13 FKRLWTYIRLYK-AGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566554443 3344555666667777777888888888876432111 11112222344556667778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
+..+.+.++..++|.++++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88889999999999999999999999999974 99999999999999999999888889999998888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++......++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77776666666666777777888999889999999999988888888888888888899999999999999999998765
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+.. ..+.++..+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 402 (582)
T 3b5x_A 327 ERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICL 402 (582)
T ss_pred cCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 43211 11122234679999999999743 257999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
||+|+.+.+.+++|++|+||||+|++|++||+|||.++. +..++++++++++.++++++++.+|+|++|.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LS 482 (582)
T 3b5x_A 403 DGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLS 482 (582)
T ss_pred CCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCC
Confidence 999999999999999999999999999999999999987 6678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++++..||+|++|++|++++.|+|
T Consensus 483 gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b5x_A 483 GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRH 562 (582)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHH
Q 001041 605 SKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1178)
+|+.++ ++.|+++++.|
T Consensus 563 ~~l~~~-~~~~~~~~~~q 579 (582)
T 3b5x_A 563 ADLLAQ-DGAYAQLHRIQ 579 (582)
T ss_pred HHHHhC-CcHHHHHHHHh
Confidence 999986 67898888755
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-77 Score=733.44 Aligned_cols=566 Identities=32% Similarity=0.523 Sum_probs=488.8
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQVT 125 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (1178)
++.++++.++.. ..+++++++.++.+++.+..+++++.+++......+ ........+.+++++++..++.++..+
T Consensus 13 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 13 FRRLWPTIAPFK-AGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD----RSVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHGGGH-HHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT----HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666665443 334455566666677777778888888886543211 111111222344555667777888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 126 CWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGWL 205 (1178)
Q Consensus 126 ~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1178)
...+.+.+...++|.++++++++.|+.+|++. ++|++++|+++|++.+++.+...+..++..+..+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88889999999999999999999999999974 99999999999999999999988889999998888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 206 LTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGL 285 (1178)
Q Consensus 206 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 285 (1178)
+++++++.+|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888999999999999999999999999999999999999888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 001041 286 AAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRKP 365 (1178)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 365 (1178)
..++......++..+..++.+++|++++..+.++.|.+++++.+......++..+...+..+..+..+.+|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77776666666666666777888888888889999999888888887788888888899999999999999999998765
Q ss_pred CCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 366 EIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
+.+. ...+.++..+.|+++||+|+|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~---~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDE---GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCC---CCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccC---CCCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 5321 111222335679999999999742 257999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 446 DGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 446 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
||+|+++++.+++|++|+||||+|++|++||+|||.++. +..++++++++++.++++++++.+|+|++|.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999999987 6678899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
||||||++||||++++|++||||||||+||+++++.+.+.++++.+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCchHHHHHHHH
Q 001041 605 SKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 605 ~~l~~~~~~~~~~~~~~~ 622 (1178)
+|++++ ++.|+++++.|
T Consensus 563 ~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 563 SELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp HHHHHH-TSSHHHHHHHT
T ss_pred HHHHHc-CCHHHHHHHHh
Confidence 999886 67888887654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-75 Score=768.63 Aligned_cols=580 Identities=38% Similarity=0.650 Sum_probs=498.3
Q ss_pred chHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 44 VPFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQ 123 (1178)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 123 (1178)
.++++++++.++. +..++++++++++.+.+.|..+++++.+++.+...............+...+++++++..++.+++
T Consensus 691 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 769 (1284)
T 3g5u_A 691 ASFWRILKLNSTE-WPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769 (1284)
T ss_dssp CCTTHHHHHHHHT-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655443 344556677777788888999999999888765432212222233445556677777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhc-cCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 124 VTCWMITGERQATRIRGLYLKTILRQDVAFFDN-ETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 124 ~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~-~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
.+++.+.+.++..++|.+++++++++|++||++ .+++|++++|+++|++.++..++..+..++..+..+++.+++++.+
T Consensus 770 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~ 849 (1284)
T 3g5u_A 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIY 849 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999995 2489999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
+|.+++++++.+|+++++..+..+...+...+..+..++....+.|++.|+++||+|++|+.+.++|.+..+...+...+
T Consensus 850 ~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~ 929 (1284)
T 3g5u_A 850 GWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMK 929 (1284)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888888888887777788888889999999999999999999999999999998888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
...+.++..++...+..+.+++.+|+|.+++..+.++.+.++.++.+......++..+......+..+..++.|+++.++
T Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~ 1009 (1284)
T 3g5u_A 930 KAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIE 1009 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77777777777777777788888899998888888888887776655555555555555555566778889999999998
Q ss_pred cCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 363 RKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.+++.........++++..|.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 1010 ~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A 1010 KTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp SCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred CCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 87664432222222334567899999999998655567999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCC
Q 001041 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHG 520 (1178)
Q Consensus 443 i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g 520 (1178)
|.+||+|+++++.+++|++|+||||+|.+|++||+|||.++.+ ..++++++++++.+++++++..+|+|+||.+||+|
T Consensus 1090 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G 1169 (1284)
T 3g5u_A 1090 VFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKG 1169 (1284)
T ss_dssp EESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTS
T ss_pred EEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCC
Confidence 9999999999999999999999999999999999999999875 36789999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
.+||||||||+|||||++++|+|||||||||+||+++++.+++.+++..+++|+|+||||++++..||||+||++|+|+|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred ecChhHHhcCCCchHHHHHHHHhhc
Q 001041 601 KGTHSKLVEDPEGAYSQLIRLQEAN 625 (1178)
Q Consensus 601 ~g~~~~l~~~~~~~~~~~~~~~~~~ 625 (1178)
.|+|+|++++ ++.|+++++.|...
T Consensus 1250 ~g~~~~l~~~-~g~y~~l~~~q~~~ 1273 (1284)
T 3g5u_A 1250 HGTHQQLLAQ-KGIYFSMVSVQAGA 1273 (1284)
T ss_dssp EECHHHHHHS-CSHHHHHHHHHC--
T ss_pred ECCHHHHHhC-CCHHHHHHHHHhhc
Confidence 9999999987 78999999877543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-60 Score=584.61 Aligned_cols=464 Identities=21% Similarity=0.304 Sum_probs=416.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFFA 786 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1178)
+++++.+.+++++.+++++++.++.+++....+++++.++|....... ......+.++++++.++..++.+++.++..
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888888888888888888889999999999997654321 122233445555666777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 001041 787 VAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLA 866 (1178)
Q Consensus 787 ~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l~ 866 (1178)
+.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|+++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 166 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVN--RFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLS 166 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHc--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHHH
Q 001041 867 LIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVS 946 (1178)
Q Consensus 867 l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1178)
+++++++|+++++.+++.++.++..++.++..++.++.+.|+++|+++||+|++|+.+.++|.+..++..+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (587)
T 3qf4_A 167 SVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999998888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCC
Q 001041 947 GGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKI 1026 (1178)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 1026 (1178)
....++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++.
T Consensus 247 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 326 (587)
T 3qf4_A 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAI 326 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999977654
Q ss_pred CCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1027 DPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1027 ~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
++... ....++..|.|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 327 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g 404 (587)
T 3qf4_A 327 EEADN-ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDE 404 (587)
T ss_dssp CCCTT-CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESS
T ss_pred CCCCC-ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECC
Confidence 32211 11223456889999999999743 45799999999999999999999999999999999999999999999999
Q ss_pred cccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1107 VEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1107 ~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+++++.+++|++|++|||||.||++||+|||++|. ++++++++++|++.++++|++++||+|+||.++
T Consensus 405 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~ 474 (587)
T 3qf4_A 405 LDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVE 474 (587)
T ss_dssp SBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEEC
T ss_pred EEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhc
Confidence 9999999999999999999999999999999999995 478999999999999999999999999999874
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-60 Score=580.60 Aligned_cols=464 Identities=25% Similarity=0.369 Sum_probs=420.5
Q ss_pred chhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 705 VPTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYF 784 (1178)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1178)
..+++++.+.+++++.++.++++.++.+++....+++++.+++....... ......++++++++.++..++.+++.++
T Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888888888888889999999999998754321 1223445666677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 785 FAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864 (1178)
Q Consensus 785 ~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~ 864 (1178)
....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++.+...+..++.+++.++++++++++++|+
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFD--RTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHH--HSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHH
Q 001041 865 LALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1178)
Q Consensus 865 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 944 (1178)
+++++++++|+++++.+++.++.++..++.++..++..+.+.|+++|+++||+||+|+.+.++|.+..++..+...+...
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCC
Q 001041 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1178)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1178)
..+...++..++..+..++++++|++++..|.+++|.+++++.+...+..|+..+......++++..+++|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 001041 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1025 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I 1104 (1178)
+.+.. .....++..|+|+|+||+|+|++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 339 ~~~~~--~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDDP--DAVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCCS--SCCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCC--CCCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 54321 11222345688999999999963 346999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|+++++.+++|++|++|||||.||++||+|||.+|.+ +++++++++|++.++++++++++|+||||.++
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 486 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLT 486 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCH
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhc
Confidence 9999999999999999999999999999999999999954 68999999999999999999999999999874
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=577.58 Aligned_cols=466 Identities=24% Similarity=0.335 Sum_probs=415.7
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCch-hhhhh----HHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHE-LKKDS----RFWALIYLALGAGSFLLSPAQ 781 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~ 781 (1178)
+++++.+.+++++.++.++++.++..++....+++++.++|........ ..... ..+.++++++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667788888888888888888888888899999999987643211 01111 223344455566777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTA 861 (1178)
Q Consensus 782 ~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~ 861 (1178)
.++.++.+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.+++++...+..++.+++.+++++++++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 5899999999999999999999999899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhH
Q 001041 862 SWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIR 941 (1178)
Q Consensus 862 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~ 941 (1178)
+|++++++++++|+++++.+++.++.++..++.++..++..+.+.|+++|+++||+|++|+.+.++|++..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhc
Q 001041 942 QGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIID 1021 (1178)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 1021 (1178)
.....+...++...+..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988888888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 001041 1022 RESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1178)
Q Consensus 1022 ~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~ 1101 (1178)
.+++.++.. ...+.++..|.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 876543221 111223346889999999999753 457999999999999999999999999999999999999999999
Q ss_pred EEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|++||+|+++++.+++|++|++|||||.+|++||+|||.+|. ++.+++++++|++.++++|++.++|+|+||.++
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~ 472 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 472 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCC-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhc
Confidence 999999999999999999999999999999999999999995 468999999999999999999999999999875
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-58 Score=567.01 Aligned_cols=462 Identities=25% Similarity=0.344 Sum_probs=410.5
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWA-LIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
+++++.+.+++++.+++++++.++.+++....+++++.+++....... . ....+. ++++++.++..++.++..++.
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777778888888888888889998887653211 1 112222 335556677788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++|.++++|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.++++++++++++|++
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++++|+++++.+.+.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+....
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888899998889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
.....++..++..+..++++++|++++.+|.+++|.++++..+...+..|+..+......++++..+++|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b5x_A 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1026 IDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1026 ~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
.++. ..+.++..|.|+|+||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 328 ~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 403 (582)
T 3b5x_A 328 RDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403 (582)
T ss_pred CCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 3211 11122335789999999999742 2469999999999999999999999999999999999999999999999
Q ss_pred CcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1106 GVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1106 G~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|+|+++++.+++|++|++|||||.+|++||+|||++|..++.+++++++|++.++++++++++|+||||.++
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~ 475 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475 (582)
T ss_pred CEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhc
Confidence 999999999999999999999999999999999999852367899999999999999999999999999874
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-58 Score=565.56 Aligned_cols=463 Identities=27% Similarity=0.406 Sum_probs=411.0
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFW-ALIYLALGAGSFLLSPAQSYF 784 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 784 (1178)
.+++++.+.+++++.++.++++.++.+++....+++++.+++....... . ....+ .++++++.++..++.+++.++
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSYC 88 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777777888888888888888899999887643211 1 11222 233455667778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 001041 785 FAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQ 864 (1178)
Q Consensus 785 ~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~ 864 (1178)
....+.++..++|.++|+|++++|++||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|+
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHH
Q 001041 865 LALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGM 944 (1178)
Q Consensus 865 l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~ 944 (1178)
+++++++++|+++++.+++.++.++..++.++..++..+.+.|+++|+++||+|+.|+.+.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCC
Q 001041 945 VSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRES 1024 (1178)
Q Consensus 945 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 1024 (1178)
......++..++..+..++++++|++++..|.+++|.++++..+...+..|+..+......++++..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999998776
Q ss_pred CCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 001041 1025 KIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1025 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I 1104 (1178)
+.++. ....++..|.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 53221 11122345789999999999732 246999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1105 DGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1105 DG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||+|+++++.+++|++|++|||||.+|++||+|||.+|..++.+++++++|++.++++++++++|+||||.++
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~ 475 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 475 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhcccccccccc
Confidence 9999999999999999999999999999999999999852367899999999999999999999999999875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-59 Score=523.09 Aligned_cols=277 Identities=42% Similarity=0.654 Sum_probs=248.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCC
Q 001041 344 LSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGS 423 (1178)
Q Consensus 344 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~Gs 423 (1178)
...+..+.++++|+++.++.+++...... ..+.+...+.|+++||+|+|+. ..++|+|+||+|++||+++|||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 34455667788899988876554332111 1122234578999999999974 35799999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHH
Q 001041 424 GKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAK 503 (1178)
Q Consensus 424 GKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~ 503 (1178)
|||||+++|+|+++|++|+|.+||.|+.+++..++|++|+||||+|++|++||+|||.++.+..++++++++++.+++.+
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~ 171 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHD 171 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred HHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 504 FIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 504 ~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
++..+|+|++|.+|++|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|+++.+++|+|+||||+++
T Consensus 172 ~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 251 (306)
T 3nh6_A 172 AIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLST 251 (306)
T ss_dssp HHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHH
T ss_pred HHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred hhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHHhh
Q 001041 584 VRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEA 624 (1178)
Q Consensus 584 ~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 624 (1178)
+..||+|++|++|+|++.|+|+++++. ++.|.++++.+..
T Consensus 252 ~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 252 VVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 999999999999999999999999986 6889999876653
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=440.46 Aligned_cols=239 Identities=48% Similarity=0.794 Sum_probs=221.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 3469999999999999999999999999999999999999999999999999999888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+||||+|.+|..||+||+.++.+..++++++++++.+++.+.+..+|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986656778888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHH
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999988877899999999999988899999999999999999999987656778777653
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-49 Score=437.72 Aligned_cols=239 Identities=49% Similarity=0.789 Sum_probs=219.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++|++|+|+....+++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++...+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753224699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+||||+|.+|+.|++|||.++.....++++.++++.+++.+++..+|+|+++.+++.+.+||||||||++||||++++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999976555677888889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHH
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
++||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999988778999999999999888999999999999999999999875 4677777654
Q ss_pred H
Q 001041 622 Q 622 (1178)
Q Consensus 622 ~ 622 (1178)
+
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-49 Score=435.81 Aligned_cols=239 Identities=42% Similarity=0.732 Sum_probs=216.7
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.+.|+++|++++|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999996422256999999999999999999999999999999999999999999999999998888888888
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCH-HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATT-EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||||+|.+|..||+|||.++.+.... +++..+++..++.+.++.+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999997654443 56667777778889999999999999999999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++... .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999988754 7899999999999888999999999999999999999876 467777
Q ss_pred HHH
Q 001041 618 LIR 620 (1178)
Q Consensus 618 ~~~ 620 (1178)
++.
T Consensus 253 ~~~ 255 (271)
T 2ixe_A 253 MVE 255 (271)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=433.32 Aligned_cols=234 Identities=45% Similarity=0.774 Sum_probs=214.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++|+|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEcCCCCCCcccHHHHHhcC-CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
||||+|.+|..|++|||.++ .+..++++++++++.+++.+.+..+|.|+++.+++.+.+||||||||++||||++++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999997 45566788889999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHH
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIR 620 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 620 (1178)
+||||||||+||+.+.+.+.+.++++.+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|..++.
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 236 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHH
Confidence 99999999999999999999999887778999999999998888999999999999999999999765 344555543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-48 Score=443.11 Aligned_cols=237 Identities=27% Similarity=0.483 Sum_probs=219.7
Q ss_pred CCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH
Q 001041 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 378 ~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
++..+.|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|.++.+++.+.
T Consensus 14 ~~~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 3345679999999999632 3579999999999999999999999999999999999998 8999999999999999999
Q ss_pred HhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+|++|+||+|++.+|..||+||+.+.. ...+++++++++.+++.+.+...|.++++.++++|.+||||||||++|||||
T Consensus 92 ~rr~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL 170 (390)
T 3gd7_A 92 WRKAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSV 170 (390)
T ss_dssp HHHTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHH
T ss_pred HhCCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999998543 3567889999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
+++|++||||||||+||+.+...+++.|++..+++|+|+|||+++.+..||+|++|++|+|++.|+++++.+.+...|..
T Consensus 171 ~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 171 LSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp HTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999998877789999999999988889999999999999999999999887666554
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=404.86 Aligned_cols=214 Identities=28% Similarity=0.482 Sum_probs=194.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35799999999999999999999999999999999999999999999998 6
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+|+||+|++|++|++||+.++.. ....+...+++.+++.+.+..+|.++++.+++++.+||||||||++||||++++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998754 3445566677778888889999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHH-HHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcC
Q 001041 542 RILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
++||||||||+||+++.+.+.+. +++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999886 4555567899999999999888999999999999999999999765
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=407.68 Aligned_cols=223 Identities=32% Similarity=0.546 Sum_probs=199.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+.. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 35799999999999999999999999999999999999999999999998 59
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+||||+|++++.|++|||.++.. ...++..++.+.+++.+.+..+|.|+++.+++++.+||||||||++||||++++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998754 23345566777777777888889999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHH---HHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 543 ILLLDEATSALDAESEKVVQEALD---RIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~---~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+||||||||+||+.+.+.+.+.+. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999998884 34458999999999999888999999999999999999999875 56676665
Q ss_pred HH
Q 001041 620 RL 621 (1178)
Q Consensus 620 ~~ 621 (1178)
..
T Consensus 227 ~~ 228 (237)
T 2cbz_A 227 RT 228 (237)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=413.87 Aligned_cols=230 Identities=30% Similarity=0.501 Sum_probs=193.2
Q ss_pred ccEEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---
Q 001041 382 GDIELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW--- 457 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~--- 457 (1178)
..|+++|++++|+... ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 4699999999996432 246999999999999999999999999999999999999999999999999999988765
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+|++|+||+|+|.+|. .||+||+.++.. ..+.++..+.. .+.++.+ |+.........+||||||||++||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v-----~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV-----TELLSLV--GLGDKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHH-----HHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 4788999999998885 599999998631 12232222111 1122222 555566777889999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|||+.+|++||||||||+||+.+.+.+.+.++++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++
T Consensus 176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p 255 (366)
T 3tui_C 176 RALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHP 255 (366)
T ss_dssp HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSC
T ss_pred HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988753 7999999999999865 9999999999999999999999876
Q ss_pred CchHHHH
Q 001041 612 EGAYSQL 618 (1178)
Q Consensus 612 ~~~~~~~ 618 (1178)
...+.+.
T Consensus 256 ~~~~~~~ 262 (366)
T 3tui_C 256 KTPLAQK 262 (366)
T ss_dssp CSHHHHH
T ss_pred CcHHHHH
Confidence 6655443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-45 Score=401.53 Aligned_cols=219 Identities=26% Similarity=0.510 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1178)
.|+++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 58999999999642 35999999999999999999999999999999999999999999999999984 334456788
Q ss_pred ceEEEcCCC--CCCcccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 461 KIGLVSQEP--VLFTGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 461 ~i~~v~Q~~--~l~~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+|+||||+| .+|..||+||+.|+... .+.++..+.+ .+.++.+ |++........+||||||||++||||
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAra 157 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV-----DNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGV 157 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHH
Confidence 999999998 57889999999986321 2333322211 1223333 55556667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|+.+|++||||||||+||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 158 L~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 158 LVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998875 38999999999999865 999999999999999999998764
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-45 Score=395.95 Aligned_cols=216 Identities=28% Similarity=0.444 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH----
Q 001041 384 IELRDVYFSYPARP-NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI---- 458 (1178)
Q Consensus 384 i~~~~~~~~y~~~~-~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~---- 458 (1178)
|+++|++++|+... ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996432 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred hcceEEEcCCCCCCcc-cHHHHHhcCC-----CCCCHHH-HHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHH
Q 001041 459 RKKIGLVSQEPVLFTG-SIKDNIAYGK-----DDATTEE-IRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQR 530 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~-ti~~ni~~~~-----~~~~~~~-~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkqr 530 (1178)
|++|+||+|+|.+|.. ||+||+.++. .....++ ..++. +.++.+ |+... ......+||||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~~LSgGq~QR 153 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL------ECLKMA--ELEERFANHKPNQLSGGQQQR 153 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHH------HHHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHH------HHHHHC--CCChhhhhCChhhCCHHHHHH
Confidence 4569999999999875 9999998742 1122222 22222 222222 44433 366778999999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 607 (1178)
++|||||+.+|++||||||||+||+.+...+.+.++++.+ ++|+|+|||+++....||+|++|++|++++.++.+++
T Consensus 154 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 154 VAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGF 232 (235)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC--
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhh
Confidence 9999999999999999999999999999999999988753 8999999999998777999999999999999887765
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=390.05 Aligned_cols=219 Identities=25% Similarity=0.437 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH-hcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI-RKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~-r~~ 461 (1178)
.++++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999988876654 456
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 462 IGLVSQEPVLFTG-SIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|+|+||+|.+|.. |++||+.++. +....++..+. +.+.++.++ |++...++...+||||||||++|||||++
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD-----LEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHH-----HHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHH-----HHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999876 9999999864 21122222221 123344443 46666777888999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998875 5799999999998775 5999999999999999999998753
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-43 Score=402.39 Aligned_cols=221 Identities=31% Similarity=0.535 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC--CCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE--FQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~--~~~~~~r~ 460 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+ ......++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999832 12223467
Q ss_pred ceEEEcCCCCCCc-ccHHHHHhcCCCCC---CHH---HHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 461 KIGLVSQEPVLFT-GSIKDNIAYGKDDA---TTE---EIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~-~ti~~ni~~~~~~~---~~~---~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+|+||+|++.+|. .||+|||.|+.... ..+ ++.++++.+ |++........+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~-----------gL~~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT-----------GISELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH-----------TCGGGTTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHH
Confidence 8999999999985 69999999975421 122 222333222 55556677778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||+.+|++||||||||+||+.+...+.+.+.++. .+.|+|+|||+++.+. .||||++|++|+|++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999988776653 4789999999999876 4999999999999999999999987
Q ss_pred CCchHHH
Q 001041 611 PEGAYSQ 617 (1178)
Q Consensus 611 ~~~~~~~ 617 (1178)
+...|..
T Consensus 230 p~~~~~a 236 (359)
T 3fvq_A 230 PADLDAA 236 (359)
T ss_dssp CSCHHHH
T ss_pred cccHHHH
Confidence 6655543
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=389.89 Aligned_cols=213 Identities=27% Similarity=0.426 Sum_probs=185.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.+.+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEEcCCCCC-CcccHHHHHhcCCCCCC----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYGKDDAT----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+|++|++.+ +..||+||+.++..... .+++.++++.+ |+.........+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT-----------DCLALAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHT-----------TCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHc-----------CChhHhcCCcccCCHHHHHHHHHHHHH
Confidence 999999976 57899999998753222 23333333333 333344555678999999999999999
Q ss_pred cc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHh
Q 001041 538 LK------DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 538 ~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
++ +|++||||||||+||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 469999999999986 59999999999999999999986
Q ss_pred c
Q 001041 609 E 609 (1178)
Q Consensus 609 ~ 609 (1178)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=388.08 Aligned_cols=219 Identities=33% Similarity=0.548 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHhc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIRK 460 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r~ 460 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 46999999999999999999999999999999999999999999999999985 344566788
Q ss_pred ceEEEcCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 461 KIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
+|+||||++.+|.. |++||+.++. .....++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAra 173 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARA 173 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 89999999988865 9999998852 1122222111 112333433 55555667778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.+
T Consensus 174 L~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999998875 4789999999999986 49999999999999999999997654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=403.86 Aligned_cols=224 Identities=26% Similarity=0.446 Sum_probs=190.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999888765 3679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .||+|||.|+.. ..+.++..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~ 150 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVA 150 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHH-----HHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence 99999999985 599999998632 1233322221 11223333 55666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|++||||||||+||+.....+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++...+...|.
T Consensus 151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v 230 (381)
T 3rlf_A 151 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 230 (381)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHH
Confidence 9999999999999999999999999988753 799999999999875 4999999999999999999999987766665
Q ss_pred HH
Q 001041 617 QL 618 (1178)
Q Consensus 617 ~~ 618 (1178)
..
T Consensus 231 ~~ 232 (381)
T 3rlf_A 231 AG 232 (381)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=383.72 Aligned_cols=217 Identities=28% Similarity=0.454 Sum_probs=183.1
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999953 469999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEcCCCCCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFTG-SIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~~-ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
|+|+||+|.+|.. |++||+.++.. ....++..+. +.+.++.+ |++........+||||||||++|||||+
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~ 162 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM-----VERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 162 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHH-----HHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999988865 99999987421 1122211111 11222222 4555556667889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
.+|++||||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 163 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 163 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999998875 47899999999999876 99999999999999999999864
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=383.68 Aligned_cols=214 Identities=23% Similarity=0.395 Sum_probs=183.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH-HHhcc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ-WIRKK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~-~~r~~ 461 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877653 45778
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCC--C-------------CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCCh
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDD--A-------------TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSG 525 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~--~-------------~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSg 525 (1178)
|+||||+|.+|. .|++||+.++... . ..++.. ..+.+.++.+ |++....+...+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999998875 6999999986422 1 111111 1223445554 677777788889999
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecC
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~ 603 (1178)
|||||++||||++.+|++||||||||+||+.+.+.+.+.++++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999999999999999988754 789999999999886 599999999999999999
Q ss_pred hhH
Q 001041 604 HSK 606 (1178)
Q Consensus 604 ~~~ 606 (1178)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 988
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=384.99 Aligned_cols=220 Identities=30% Similarity=0.530 Sum_probs=183.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC----------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE---------- 452 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~---------- 452 (1178)
.|+++|++++|+. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999953 469999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcceEEEcCCCCCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCC
Q 001041 453 FQL---QWIRKKIGLVSQEPVLFTG-SIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLS 524 (1178)
Q Consensus 453 ~~~---~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lS 524 (1178)
.+. ..+|++|+||+|++.+|.. ||+||+.++. .....++..+ .+.+.++.+ |++.. ......+||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~L~~~~~~~~~~~LS 155 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE-----RALKYLAKV--GIDERAQGKYPVHLS 155 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHH-----HHHHHHHHT--TCCHHHHTSCGGGSC
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHH-----HHHHHHHHc--CCCchhhcCCcccCC
Confidence 443 3457789999999988865 9999998742 1122221111 112233333 45555 566778899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEec
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g 602 (1178)
||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 156 gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 156 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998875 3789999999999986 59999999999999999
Q ss_pred ChhHHhcCCC
Q 001041 603 THSKLVEDPE 612 (1178)
Q Consensus 603 ~~~~l~~~~~ 612 (1178)
+++++...+.
T Consensus 236 ~~~~~~~~~~ 245 (262)
T 1b0u_A 236 DPEQVFGNPQ 245 (262)
T ss_dssp CHHHHHHSCC
T ss_pred CHHHHHhCcc
Confidence 9999987543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=395.27 Aligned_cols=222 Identities=30% Similarity=0.528 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887654 5689
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCCCC--HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDDAT--TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .||+|||.|+..... .++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~ 150 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEK-----RVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVK 150 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999885 599999999753221 111111 112223333 55555666778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 230 (359)
T 2yyz_A 151 QPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230 (359)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 9999999999999999999999999988753 789999999999875 5999999999999999999999887655443
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-43 Score=376.96 Aligned_cols=211 Identities=26% Similarity=0.403 Sum_probs=177.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 4899999999963 46999999999999999999999999999999999999999999999999998877543 34
Q ss_pred -cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 460 -KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 460 -~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
++|+||||+|.+|. .|++||+.++.. ....++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE-----RGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIAR 153 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHH
Confidence 68999999998885 699999987531 111111111 122333433 5555566677899999999999999
Q ss_pred HhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 536 al~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
|++.+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 154 ALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999998874 4789999999999887799999999999999886
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-43 Score=389.00 Aligned_cols=209 Identities=28% Similarity=0.484 Sum_probs=175.5
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK 460 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~ 460 (1178)
.+.|+++|++|.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3469999999864 3599999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 461 KIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|+|+||+|.+|.+|++||+. +.. ....+...+++.+++.+.+..+|.++++.+++.+.+||||||||++||||++++
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~ 177 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKD 177 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSC
T ss_pred EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCC
Confidence 699999999999999999998 543 344455667777888888999999999999999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHH-HHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhc
Q 001041 541 PRILLLDEATSALDAESEKVVQEAL-DRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i-~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|++||||||||+||+.+.+.+.+.+ +++.+++|+|+|||+++.+..||+|++|++|++++.|+++++..
T Consensus 178 p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 178 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHH
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhh
Confidence 9999999999999999999998864 44446899999999999988899999999999999999999865
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=383.58 Aligned_cols=215 Identities=30% Similarity=0.523 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 384 IELRDVYFSYPARPN--EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~--~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
|+++|++++|+.... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999988643 66788
Q ss_pred eEEEcCCC--CCCcccHHHHHhcCCCC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 462 IGLVSQEP--VLFTGSIKDNIAYGKDD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 462 i~~v~Q~~--~l~~~ti~~ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
|+||+|+| .++..|++||+.++... ...+++.++++..++.+ .........+||||||||++||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~---------~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDF---------DSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCH---------HHHTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCC---------cccccCChhhCCHHHHHHHHHH
Confidence 99999997 56789999999986422 12344555555544430 0334455578999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
|||+++|++||||||||+||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 151 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 151 SVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998874 47899999999999875 999999999999999999988754
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-43 Score=386.65 Aligned_cols=217 Identities=24% Similarity=0.369 Sum_probs=183.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC--CCCHHHHh
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK--EFQLQWIR 459 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~--~~~~~~~r 459 (1178)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|
T Consensus 20 ~~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 96 (279)
T 2ihy_A 20 MLIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVR 96 (279)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHH
T ss_pred ceEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHc
Confidence 35999999999963 46999999999999999999999999999999999999999999999999987 77777788
Q ss_pred cceEEEcCCCCC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 460 KKIGLVSQEPVL-FTG--SIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 460 ~~i~~v~Q~~~l-~~~--ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
++|+||+|+|.+ |.. |++||+.++... ..++...+ +.+.++.+ |++........+|||||||
T Consensus 97 ~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~--gl~~~~~~~~~~LSgGqkq 168 (279)
T 2ihy_A 97 QHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE------AHQLLKLV--GMSAKAQQYIGYLSTGEKQ 168 (279)
T ss_dssp TTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHH------HHHHHHHT--TCGGGTTSBGGGSCHHHHH
T ss_pred CcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHH------HHHHHHHc--CChhHhcCChhhCCHHHHH
Confidence 899999999864 444 999999986421 11211111 12233333 5665667777899999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeE--EEEecCcchhh-ccCEEEEEeCCEEEEecChh
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTT--VIVAHRLSTVR-NADMIAVIHRGKIVEKGTHS 605 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~--i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~ 605 (1178)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|++++.|+++
T Consensus 169 Rv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 248 (279)
T 2ihy_A 169 RVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVE 248 (279)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999988753 7899 99999999885 59999999999999999999
Q ss_pred HHhc
Q 001041 606 KLVE 609 (1178)
Q Consensus 606 ~l~~ 609 (1178)
++.+
T Consensus 249 ~~~~ 252 (279)
T 2ihy_A 249 DILT 252 (279)
T ss_dssp HHCS
T ss_pred HHhc
Confidence 8864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-42 Score=428.36 Aligned_cols=196 Identities=24% Similarity=0.328 Sum_probs=157.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.+...|++++|++ +++|+|+||++++|++++|+||||||||||+++|.| |+| +|.+... +.++
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 5777899999963 469999999999999999999999999999999996 554 4543311 1247
Q ss_pred EEEcCCC-CC-CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 463 GLVSQEP-VL-FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 463 ~~v~Q~~-~l-~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|++|++ .+ ...|++||+.+..... .+++.+.++..++.+ ........+||||||||++||||++.+
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~----------~~~~~~~~~LSGGqkQRvaLArAL~~~ 566 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTD----------EMIAMPISALSGGWKMKLALARAVLRN 566 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCH----------HHHHSBGGGCCHHHHHHHHHHHHHHTT
T ss_pred EEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCCh----------hhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999986 33 4679999998621111 455555555554411 123344467999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCCEEE-EecChhHHh
Q 001041 541 PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV-EKGTHSKLV 608 (1178)
Q Consensus 541 ~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~ 608 (1178)
|++|||||||++||+.+...+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.
T Consensus 567 P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~ 634 (986)
T 2iw3_A 567 ADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFV 634 (986)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHH
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHH
Confidence 999999999999999999999999988 68999999999999875 9999999999997 578887764
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=395.53 Aligned_cols=222 Identities=36% Similarity=0.523 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887654 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .||+|||.|+.. ....++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 150 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDK-----KVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVK 150 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999985 599999998632 122222111 112223333 55555666778999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|.
T Consensus 151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 230 (362)
T 2it1_A 151 EPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFV 230 (362)
T ss_dssp CCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHH
Confidence 9999999999999999999999999988753 789999999999875 5999999999999999999999887655443
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=394.27 Aligned_cols=222 Identities=26% Similarity=0.451 Sum_probs=183.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999953 4699999999999999999999999999999999999999999999999999877654 4679
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+||+|++.+|. .||+|||.|+... ...++..+ .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~ 158 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 158 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999999885 6999999997542 22222211 112233333 56666677788999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|.
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 238 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 238 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 9999999999999999999999999988753 789999999999875 5999999999999999999999887655443
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=393.24 Aligned_cols=223 Identities=29% Similarity=0.519 Sum_probs=186.6
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 45999999999932 2469999999999999999999999999999999999999999999999999987654 3678
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
|+||+|++.+|. .||+|||.|+.. ....++..+ .+.+.++.+ |++........+||||||||++|||||+
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~-----~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~ 161 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA-----RVRELLRFM--RLESYANRFPHELSGGQQQRVALARALA 161 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence 999999999886 599999998632 112222111 112223333 5555566677899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++...|
T Consensus 162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp TCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 99999999999999999999999999988753 7899999999998754 99999999999999999999987755444
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-42 Score=373.31 Aligned_cols=213 Identities=32% Similarity=0.481 Sum_probs=180.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+. +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ..|++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 59999999999 999999999999999999999999999999999999987643 2467899
Q ss_pred EEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
||||+|.+|.. |++||+.++........- ...+.+.++.+ |++........+||||||||++||||++++|+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~ 146 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVER-----DRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHH-----HHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchH-----HHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999998865 999999987543221111 11122334444 55555666778999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
+|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.+
T Consensus 147 lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999988743 799999999999875 59999999999999999999987653
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-42 Score=391.45 Aligned_cols=215 Identities=30% Similarity=0.517 Sum_probs=184.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|+ +. +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. |++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchh--hCcEE
Confidence 78999999995 24 99999999999999999999999999999999999999999999999999876553 56899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
||+|++.+|. .||+||+.|+.. ...++++.++++.. |++........+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~-----------~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999986 499999998631 11123344444333 44444566677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++.+++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 789999999999875 599999999999999999999988755444
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=394.00 Aligned_cols=224 Identities=29% Similarity=0.448 Sum_probs=186.1
Q ss_pred cEEEEeEEEECCCCCCCc--cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC---HHH
Q 001041 383 DIELRDVYFSYPARPNEQ--IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQW 457 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~--~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~ 457 (1178)
.|+++|++++|++ .+ +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999953 45 999999999999999999999999999999999999999999999999986521 223
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
.+++|+||+|++.+|. .||+|||.|+... ...++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHH
Confidence 4678999999999986 5999999997532 12222211 112223333 555556667789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcCC
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 611 (1178)
|||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..++
T Consensus 153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 232 (353)
T 1oxx_K 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNP 232 (353)
T ss_dssp HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 789999999999875 49999999999999999999998875
Q ss_pred CchHH
Q 001041 612 EGAYS 616 (1178)
Q Consensus 612 ~~~~~ 616 (1178)
...|.
T Consensus 233 ~~~~~ 237 (353)
T 1oxx_K 233 VSIQV 237 (353)
T ss_dssp SSHHH
T ss_pred ccHHH
Confidence 54443
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-42 Score=372.93 Aligned_cols=208 Identities=23% Similarity=0.352 Sum_probs=182.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i 75 (249)
T 2qi9_C 4 VMQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHR 75 (249)
T ss_dssp EEEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceE
Confidence 3889999985 4899999999999999999999999999999999999999 9999999999888888888999
Q ss_pred EEEcCCCCCCc-ccHHHHHhcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 463 GLVSQEPVLFT-GSIKDNIAYGKDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 463 ~~v~Q~~~l~~-~ti~~ni~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+|+||+|.+|. .|++||+.++... .+.+++.++++.. |++........+||||||||++||||++++
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv~lAraL~~~ 144 (249)
T 2qi9_C 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQI 144 (249)
T ss_dssp EEECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHT-----------TCGGGTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence 99999998875 5999999987421 2244444444443 444455667789999999999999999999
Q ss_pred CC-------EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 541 PR-------ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 541 ~~-------illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|+ +|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 145 p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 145 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp CTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99 999999999999999999999998874 4789999999999984 699999999999999999999864
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=393.61 Aligned_cols=222 Identities=27% Similarity=0.487 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC------CCHH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE------FQLQ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~------~~~~ 456 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 4899999999953 469999999999999999999999999999999999999999999999999865 4443
Q ss_pred HHhcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH
Q 001041 457 WIRKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI 533 (1178)
Q Consensus 457 ~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l 533 (1178)
+++|+||+|++.+|. .||+|||.|+.. ....++..+. +.+.++.+ |++........+||||||||++|
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~--~L~~~~~r~~~~LSGGq~QRval 150 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR-----VREVAELL--GLTELLNRKPRELSGGQRQRVAL 150 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCCcccCCHHHHHHHHH
Confidence 568999999999885 699999998632 1222222111 11222222 55555666778999999999999
Q ss_pred HHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 534 ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 534 ARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+++++..+
T Consensus 151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 230 (372)
T 1g29_1 151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230 (372)
T ss_dssp HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 789999999999875 5999999999999999999999887
Q ss_pred CCchHH
Q 001041 611 PEGAYS 616 (1178)
Q Consensus 611 ~~~~~~ 616 (1178)
+...|.
T Consensus 231 p~~~~~ 236 (372)
T 1g29_1 231 PANTFV 236 (372)
T ss_dssp CSBHHH
T ss_pred cccHHH
Confidence 655443
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=421.56 Aligned_cols=193 Identities=21% Similarity=0.341 Sum_probs=152.1
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE---------EECCeecCCCCHHH
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGINLKEFQLQW 457 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i---------~i~g~~~~~~~~~~ 457 (1178)
+|++++|+.. ..+|+|+| ++++||+++|+||||||||||+++|.|+++|++|++ .++|.++.+.....
T Consensus 95 ~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGVN--AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECCC--CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 8999999642 25899999 999999999999999999999999999999999996 34565443221111
Q ss_pred --HhcceEEEcCCC----CCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 458 --IRKKIGLVSQEP----VLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 458 --~r~~i~~v~Q~~----~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
.+..+++++|.. .++.+|++||+..... .+++.++++.. |++........+||||||||+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~l-----------gL~~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKEL-----------ELENVLDRELHQLSGGELQRV 237 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHT-----------TCTTGGGSBGGGCCHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHc-----------CCCchhCCChhhCCHHHHHHH
Confidence 134588998874 3445699999975221 22333333333 444445555678999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
+|||||+++|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|+++
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999999999999999999999999999999998875 37899999999998865 9999999753
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-42 Score=373.39 Aligned_cols=214 Identities=27% Similarity=0.429 Sum_probs=171.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHHH-h
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1178)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++.+.+.... |
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~ 79 (250)
T 2d2e_A 3 QLEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERAR 79 (250)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHh
Confidence 3889999999963 4699999999999999999999999999999999998 88999999999999988877654 4
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC---C--CCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCC-CChHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD---D--ATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQ-LSGGQKQRI 531 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~---~--~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~-lSgGqkqri 531 (1178)
..++|++|+|.+|. .|++||+.++.. . ...++..+ .+.+.++.+ |++ ........+ ||||||||+
T Consensus 80 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGqkQrv 152 (250)
T 2d2e_A 80 KGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT-----KVKKALELL--DWDESYLSRYLNEGFSGGEKKRN 152 (250)
T ss_dssp TTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHH--TCCGGGGGSBTTCC----HHHHH
T ss_pred CcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHHHHHH
Confidence 56999999999886 499999987421 0 11111111 111222222 443 233444456 999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecChhH
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~~~ 606 (1178)
+|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 153 ~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 153 EILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999998875 47899999999999875 59999999999999999873
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=414.94 Aligned_cols=195 Identities=22% Similarity=0.354 Sum_probs=150.2
Q ss_pred EE-EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE---------EECCeecCCCC
Q 001041 385 EL-RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV---------LIDGINLKEFQ 454 (1178)
Q Consensus 385 ~~-~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i---------~i~g~~~~~~~ 454 (1178)
++ +|++++|++. ..+|+|+| +|++||+++|+||||||||||+++|.|+++|++|++ .++|.++....
T Consensus 22 ~~~~~ls~~yg~~--~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 22 QLEEDCVHRYGVN--AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp --CCCEEEECSTT--CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hHhcCcEEEECCc--cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 44 5899999642 25899999 999999999999999999999999999999999995 35565443211
Q ss_pred HHH--HhcceEEEcCCCCC----CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 455 LQW--IRKKIGLVSQEPVL----FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 455 ~~~--~r~~i~~v~Q~~~l----~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
... .+..+++++|+... +.+|+++|+..... .+++.++++.. |++........+||||||
T Consensus 99 ~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~l-----------gl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 99 EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKAL-----------ELENVLEREIQHLSGGEL 164 (538)
T ss_dssp HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHT-----------TCTTTTTSBGGGCCHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHc-----------CCChhhhCChhhCCHHHH
Confidence 111 12468899987543 34699999864211 12233333333 344344555678999999
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
||++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|
T Consensus 165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999998764 47899999999999875 9999999753
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=372.11 Aligned_cols=207 Identities=17% Similarity=0.313 Sum_probs=177.8
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 384 IELRDVYFSYPAR-PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 384 i~~~~~~~~y~~~-~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
++++|++++|++. ..+++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999998654 23 6789
Q ss_pred E-EEcCCCCCCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhc
Q 001041 463 G-LVSQEPVLFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 463 ~-~v~Q~~~l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+ |+||+|.+ ..|++||+.++.+ ...++++.+++ +.+ |++ ...+....+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l---------~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEML---------KAL--KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHH---------HHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHH---------HHc--CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 9999999987532 22334443333 333 555 6667778899999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccC-EEEEEeCCEEEEecChhHHhc
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NAD-MIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d-~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
++|++|||||||++||+.+.+.+.+.++++.+ |+|++||+++.+. .|| +|++|++|++++.|+++++.+
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 99999999999999999999999999988654 9999999999875 599 999999999999999998864
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=367.95 Aligned_cols=216 Identities=25% Similarity=0.360 Sum_probs=177.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc--CCCCCCcEEECCeecCCCCHHHH-h
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF--YDPQAGEVLIDGINLKEFQLQWI-R 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~--~~~~~G~i~i~g~~~~~~~~~~~-r 459 (1178)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999953 4699999999999999999999999999999999999 57899999999999988776655 4
Q ss_pred cceEEEcCCCCCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCC-CCChHH
Q 001041 460 KKIGLVSQEPVLFTG-SIKDNIAYGK---------DDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGT-QLSGGQ 527 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~~-ti~~ni~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~-~lSgGq 527 (1178)
..|+|++|+|.+|.. |+++|+.++. +..+.++..+ .+.+.++.+ |+++.. ..... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999988854 8999987532 1112222111 122334443 554433 33333 599999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc--cCEEEEEeCCEEEEecCh
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN--ADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~--~d~i~~l~~G~i~~~g~~ 604 (1178)
|||++|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999998874 47899999999999875 899999999999999998
Q ss_pred hHHh
Q 001041 605 SKLV 608 (1178)
Q Consensus 605 ~~l~ 608 (1178)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8763
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-41 Score=366.12 Aligned_cols=203 Identities=29% Similarity=0.440 Sum_probs=170.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+ +++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~-------------~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-------------YQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-------------CSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-------------eccE
Confidence 4899999999962 246999999999999999999999999999999999999999999982 4589
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC-------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDD-------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~-------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
+||||+|.+| ..|++||+.++... ...+...+ +.+.++.+ |++........+||||||||++||
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV------AMQALDYL--NLTHLAKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHH------HHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHH------HHHHHHHc--CChHHhcCChhhCCHHHHHHHHHH
Confidence 9999999887 67999999986421 12211111 11223333 555556667789999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhc
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|||+++|++||||||||+||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||+|++|++|+ ++.|+++++..
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999999999999999999999999999988754 789999999999985 599999999999 99999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=417.04 Aligned_cols=202 Identities=25% Similarity=0.393 Sum_probs=134.9
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHH---------------------HHHhccCCCC-------CCcEEECCeec
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVI---------------------SLIERFYDPQ-------AGEVLIDGINL 450 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~---------------------~~l~g~~~~~-------~G~i~i~g~~~ 450 (1178)
..+|+|+||+|++||+++|+||||||||||+ +.+.|+..|. .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 8888888887 45566666544
Q ss_pred CCCCHHHHhcceEEEcCCCCC--------------------CcccHHHHHhcCCCC-CCH--HH-----HHHHHHHhcHH
Q 001041 451 KEFQLQWIRKKIGLVSQEPVL--------------------FTGSIKDNIAYGKDD-ATT--EE-----IRVATELANAA 502 (1178)
Q Consensus 451 ~~~~~~~~r~~i~~v~Q~~~l--------------------~~~ti~~ni~~~~~~-~~~--~~-----~~~~~~~~~~~ 502 (1178)
.. ..+..+++|+|.+.+ ...|++||+.+.... ... .+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 224456677665533 245899999874211 011 11 11111111
Q ss_pred HHHHhCCCCccch-hcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEe
Q 001041 503 KFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1178)
Q Consensus 503 ~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~it 578 (1178)
+.++.+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. ++.|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 123333 44332 345567899999999999999999988 999999999999999999999998764 478999999
Q ss_pred cCcchhhccCEEEEE------eCCEEEEecChhHHhc
Q 001041 579 HRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 579 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1178)
|+++.+..||+|++| ++|++++.|+++++.+
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 999998889999999 8999999998877653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=401.58 Aligned_cols=191 Identities=21% Similarity=0.388 Sum_probs=146.0
Q ss_pred eEEEECCCCCCCccccceeEEE-eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE-----------EECCeecCCCCH
Q 001041 388 DVYFSYPARPNEQIFSGFSISI-SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQL 455 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i-~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-----------~i~g~~~~~~~~ 455 (1178)
++.++|+.. -++...|.+ ++||++||+||||||||||+++|+|+++|++|+| .++|.++..+..
T Consensus 4 ~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 4 EVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 567899632 244444544 4899999999999999999999999999999998 566765533211
Q ss_pred HHH------hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHH
Q 001041 456 QWI------RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQ 529 (1178)
Q Consensus 456 ~~~------r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkq 529 (1178)
... ...+.|++|.|.++.+++++++..... .++..++++.. |++........+|||||||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l-----------~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 80 ELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELL-----------NMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp HHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHT-----------TCGGGTTSBGGGCCHHHHH
T ss_pred HHhhcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHc-----------CCchhhcCChhhCCHHHHH
Confidence 111 123455666677788899998763221 12333444443 3333344555689999999
Q ss_pred HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhc-cCEEEEEeCC
Q 001041 530 RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 530 ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~-~d~i~~l~~G 596 (1178)
|++|||||+.+|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~ 213 (538)
T 3ozx_A 146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGE 213 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCC
Confidence 999999999999999999999999999999999999988778999999999998865 9999999764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=352.34 Aligned_cols=195 Identities=22% Similarity=0.387 Sum_probs=163.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|+ + ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999886 257889
Q ss_pred EEEcCCCCCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 463 GLVSQEPVLFTG-SIKDNIAYGKD----DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 463 ~~v~Q~~~l~~~-ti~~ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+||||+|.+|.. |++||+.++.. ....+++.+++ +.+ |++.. ++...+||||||||++||||+
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l---------~~~--gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDAL---------ESV--EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHH---------HHT--TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHH---------HHc--CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999998875 99999987521 11233333333 333 55555 677789999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~ 599 (1178)
+++|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|+ +.+|+|-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~~ 211 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKID 211 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC---
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCccc
Confidence 99999999999999999999999999998765 47899999999999876 66655 5567663
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=383.07 Aligned_cols=195 Identities=20% Similarity=0.356 Sum_probs=144.6
Q ss_pred eEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE-----------EECCeecCCCCHH
Q 001041 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-----------LIDGINLKEFQLQ 456 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-----------~i~g~~~~~~~~~ 456 (1178)
|++++|+. ....|++++ .+++||+++|+||||||||||+++|.|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~--~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSA--NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECST--TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECC--CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 57899964 335778877 589999999999999999999999999999999998 2334333222222
Q ss_pred HHhcce--EEEcCCCC----CCc---ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 457 WIRKKI--GLVSQEPV----LFT---GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 457 ~~r~~i--~~v~Q~~~----l~~---~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
.++..+ .+.+|... .+. .++.+++.... ....+++.++++.. |++........+|||||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGe 226 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIKIL-----------QLENVLKRDIEKLSGGE 226 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHHHH-----------TCTGGGGSCTTTCCHHH
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHHHc-----------CCcchhCCChHHCCHHH
Confidence 223333 23333221 111 25666665432 22344555444443 44555566778999999
Q ss_pred HHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhc-cCEEEEEeCCE
Q 001041 528 KQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~-~d~i~~l~~G~ 597 (1178)
|||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|.
T Consensus 227 ~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp HHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 9999999999999999999999999999999999999988754 7899999999999875 99999998653
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=321.72 Aligned_cols=171 Identities=33% Similarity=0.556 Sum_probs=147.8
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCC
Q 001041 1003 SSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGS 1082 (1178)
Q Consensus 1003 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGS 1082 (1178)
+..++.+.++++|++++++.+++...... ....+...|.|+|+||+|+|++ +.+||+||||+|++||++||||||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 34567778889999999987655432211 1122234678999999999973 34699999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCch
Q 001041 1083 GKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162 (1178)
Q Consensus 1083 GKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~ 1162 (1178)
|||||+++|+|+|+|++|+|+|||+|+++++..++|++|++|||||.||++||+|||.||.. .++++++++|++.++++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~-~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRV-TAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTST-TCCHHHHHHHHHHHTCH
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcc-cCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999999954 68899999999999999
Q ss_pred HHHhhcccccccccc
Q 001041 1163 KFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1163 dfI~~LP~gldT~v~ 1177 (1178)
+++..+|+||||.++
T Consensus 171 ~~i~~lp~gl~t~~~ 185 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVG 185 (306)
T ss_dssp HHHHHSTTGGGCEES
T ss_pred HHHHhccchhhhHhc
Confidence 999999999999874
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-32 Score=333.79 Aligned_cols=199 Identities=25% Similarity=0.353 Sum_probs=165.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++++|++ ..|+++||++++||+++|+||||||||||+++|.|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999952 36899999999999999999999999999999999999999999762 379
Q ss_pred EEEcCCCCC-CcccHHHHHhcC-CCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYG-KDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~-~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||++.. +..|++||+.+. .+.. ..+.+. +.++.+ |+.........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKT---------ELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHH---------HTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHH---------HHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999865 578999998753 1100 111122 222222 44444556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVE 609 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 609 (1178)
+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |++...|+++++..
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999998874 47899999999999875 999999986 88888999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.7e-32 Score=331.72 Aligned_cols=199 Identities=24% Similarity=0.356 Sum_probs=165.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 5899999999952 36899999999999999999999999999999999999999999862 369
Q ss_pred EEEcCCCCC-CcccHHHHHhcC-CCC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVL-FTGSIKDNIAYG-KDD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l-~~~ti~~ni~~~-~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+||++.. +..||.+|+... .+. ...+. +.+.++.+ |+.........+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~---------~~~~l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFY---------KTELLKPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHH---------HHHTTTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHH---------HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999965 578999988642 110 01111 12233333 55555666778899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhHHhc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVE 609 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~ 609 (1178)
+|++|||||||++||+.+...+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++ |+++..|+++++..
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999998874 38999999999999875 999999986 78888999988754
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-32 Score=325.36 Aligned_cols=200 Identities=21% Similarity=0.285 Sum_probs=165.0
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
..++++|+++.|++ ..|++.||++++||+++|+||||||||||+++|+|+++|++|+|.++|. .
T Consensus 268 ~~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~ 331 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------I 331 (538)
T ss_dssp EEEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------C
T ss_pred ceEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------e
Confidence 35889999999953 4688889999999999999999999999999999999999999998763 6
Q ss_pred eEEEcCCCCC-CcccHHHHHhcCCCCC---CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 462 IGLVSQEPVL-FTGSIKDNIAYGKDDA---TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 462 i~~v~Q~~~l-~~~ti~~ni~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++|+||++.. +..||++|+.+..... ..+...++ ++.+ |+.........+||||||||++|||||
T Consensus 332 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSGGq~QRv~iAraL 400 (538)
T 3ozx_A 332 LSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEV---------TKRL--NLHRLLESNVNDLSGGELQKLYIAATL 400 (538)
T ss_dssp EEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHT---------TTTT--TGGGCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred eEeechhcccccCCCHHHHHHHhhhhccchhHHHHHHH---------HHHc--CCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999864 5789999998643221 11222222 2222 555556667788999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhHHh
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLV 608 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~ 608 (1178)
+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |.+...+++.++.
T Consensus 401 ~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 401 AKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 99999999999999999999999999998875 37899999999999875 999999986 5666677776654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-35 Score=329.04 Aligned_cols=217 Identities=19% Similarity=0.267 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCCCCcccCCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCE
Q 001041 335 MSLGEASPCLSAFGAGQAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTT 414 (1178)
Q Consensus 335 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~ 414 (1178)
.++..+...+..+..+..+..|+.+.++.+++..... .. ..+..+.|+++||+|+|+ .++|+++||+|++|++
T Consensus 56 ~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~~-~~~~~~~i~~~~vs~~y~----~~vL~~vsl~i~~Ge~ 128 (305)
T 2v9p_A 56 KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--GS-WKSILTFFNYQNIELITF----INALKLWLKGIPKKNC 128 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--CC-THHHHHHHHHTTCCHHHH----HHHHHHHHHTCTTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--Cc-ccccCCeEEEEEEEEEcC----hhhhccceEEecCCCE
Confidence 4556666677788889999999999987644321111 11 011234589999999995 3699999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH-HHhcCCCCCCHHHHH
Q 001041 415 AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD-NIAYGKDDATTEEIR 493 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~-ni~~~~~~~~~~~~~ 493 (1178)
++|+||||||||||+++|+|++ +|+| ++|++|+|++|.+|+++ ||.++ ++.++
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~~~-~~~~~---- 182 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAALV-DDATH---- 182 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCEEE-EEECH----
T ss_pred EEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhccC-ccccH----
Confidence 9999999999999999999999 7888 56889999999999998 99986 33333
Q ss_pred HHHHHhcHHHHHHh-CCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCC
Q 001041 494 VATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNR 572 (1178)
Q Consensus 494 ~~~~~~~~~~~i~~-~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~ 572 (1178)
+++++++. +|+|++ |.+|||||||| |||++++|+||| ||+||+++++.+..
T Consensus 183 ------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--------- 234 (305)
T 2v9p_A 183 ------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--------- 234 (305)
T ss_dssp ------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------
T ss_pred ------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------
Confidence 23456777 899988 67999999999 999999999999 99999999887752
Q ss_pred eEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHH
Q 001041 573 TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 573 t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
+|||++.+..||+| +|++|+|++.|+++++ ++.|.+++..
T Consensus 235 ----ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~ 274 (305)
T 2v9p_A 235 ----LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGR 274 (305)
T ss_dssp ----GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTT
T ss_pred ----HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHH
Confidence 29999999999999 9999999999999999 4677776653
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-31 Score=336.48 Aligned_cols=205 Identities=21% Similarity=0.367 Sum_probs=156.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.++++|++|+|++. ++++|+|+||++++||+++|+||||||||||+++|.|+++|++|+|.++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 49999999999742 256999999999999999999999999999999999999999999999872 258
Q ss_pred EEEcCCCCC-----CcccHHHHHhcCC-----------------------------------------------------
Q 001041 463 GLVSQEPVL-----FTGSIKDNIAYGK----------------------------------------------------- 484 (1178)
Q Consensus 463 ~~v~Q~~~l-----~~~ti~~ni~~~~----------------------------------------------------- 484 (1178)
+|++|++.. ...|+++++.+..
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 899887631 2346666653210
Q ss_pred -------------C---CCC--------H----HHHHHH---------H--------HHhcHHHHHHhCCCCccch--hc
Q 001041 485 -------------D---DAT--------T----EEIRVA---------T--------ELANAAKFIDKLPQGIDTL--VG 517 (1178)
Q Consensus 485 -------------~---~~~--------~----~~~~~~---------~--------~~~~~~~~i~~~~~g~~t~--~~ 517 (1178)
. ..+ . +..... . ....+.+.++.+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 0 000 0 000000 0 001223344444 56543 35
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh-ccCEEEEEeCC
Q 001041 518 EHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR-NADMIAVIHRG 596 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~-~~d~i~~l~~G 596 (1178)
....+||||||||++||||++.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||+++.+. .||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 567789999999999999999999999999999999999999999988765 579999999999986 49999999999
Q ss_pred EEEEecC
Q 001041 597 KIVEKGT 603 (1178)
Q Consensus 597 ~i~~~g~ 603 (1178)
++++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9987664
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-31 Score=319.13 Aligned_cols=198 Identities=24% Similarity=0.386 Sum_probs=161.9
Q ss_pred EeEEEECCCCCCCccccceeEEEeCC-----CEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSG-----TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g-----~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
++++|+|+.. ..+++++||++++| |+++|+||||||||||+++|.|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~-~~------------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD-IP------------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC-CC------------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC-cc------------CCc
Confidence 5678888642 35899999999999 7899999999999999999999999999973 11 236
Q ss_pred eEEEcCCCC-CCcccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPV-LFTGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~-l~~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++|+||++. .|..|+++|+..... ....+...++++.. |+.........+||||||||++|||||.
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l-----------~l~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL-----------RIDDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH-----------TSTTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc-----------CChhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 467899999864321 12233333333322 3444455667789999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeC--CEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHR--GKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~--G~i~~~g~~~~l~~~ 610 (1178)
.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|+|++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999998864 48999999999999875 999999996 999999999998763
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.9e-30 Score=319.22 Aligned_cols=202 Identities=25% Similarity=0.378 Sum_probs=148.7
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh----------------------ccCCCCCCcEEECCeecCCCCHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE----------------------RFYDPQAGEVLIDGINLKEFQLQ 456 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~----------------------g~~~~~~G~i~i~g~~~~~~~~~ 456 (1178)
..+|+|+||+|++||+++|+||||||||||+++|+ |+. +.+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 35899999999999999999999999999998764 222 3346788888877644321
Q ss_pred HHhc-----------------------------------------ceEEEcCCCCC------------------------
Q 001041 457 WIRK-----------------------------------------KIGLVSQEPVL------------------------ 471 (1178)
Q Consensus 457 ~~r~-----------------------------------------~i~~v~Q~~~l------------------------ 471 (1178)
..+. ..+++.|+..+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1000 11233332211
Q ss_pred ---------CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 472 ---------FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 472 ---------~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+..|++||+.+.... . ...++ .+.+..+ |+. ...++...+||||||||++|||||+.+|
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~--~-~~~~~------~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p 562 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI--P-KIKRK------LETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAAELHRRS 562 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC--H-HHHHH------HHHHHHT--TCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCC
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh--h-hHHHH------HHHHHHc--CCchhhccCCchhCCHHHHHHHHHHHHHhhCC
Confidence 135889999875432 1 11111 1223333 333 2346777899999999999999999886
Q ss_pred ---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhHHhcCC
Q 001041 542 ---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 542 ---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 611 (1178)
++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+..||+|++| ++|+|++.|+++++.+..
T Consensus 563 ~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 563 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp CSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhCC
Confidence 5999999999999999999999998875 478999999999999889999999 899999999999998764
Q ss_pred C
Q 001041 612 E 612 (1178)
Q Consensus 612 ~ 612 (1178)
.
T Consensus 643 ~ 643 (670)
T 3ux8_A 643 E 643 (670)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=309.29 Aligned_cols=99 Identities=24% Similarity=0.427 Sum_probs=87.8
Q ss_pred Cccch-hcCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc
Q 001041 511 GIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN 586 (1178)
Q Consensus 511 g~~t~-~~~~g~~lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~ 586 (1178)
|++.. .+....+|||||||||+|||||.++| ++|||||||++||++..+.+.+.++.+. .+.|+|+|+|+++.+..
T Consensus 367 GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 367 GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 66644 57777899999999999999999999 4999999999999999999999888775 47899999999999988
Q ss_pred cCEEEEE------eCCEEEEecChhHHhc
Q 001041 587 ADMIAVI------HRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 587 ~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1178)
||+|++| ++|++++.|+++++.+
T Consensus 447 aD~ii~lgpgaG~~~G~iv~~g~~~~~~~ 475 (842)
T 2vf7_A 447 ADWLVDVGPEAGEKGGEILYSGPPEGLKH 475 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECGGGGGG
T ss_pred CCEEEEeCCCcccCCCEEEEecCHHHHHh
Confidence 9999999 7899999998876643
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=309.51 Aligned_cols=205 Identities=27% Similarity=0.465 Sum_probs=151.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHH---------HHHhccCCCC------CC------cEEECCeecCCCCH---
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVI---------SLIERFYDPQ------AG------EVLIDGINLKEFQL--- 455 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~---------~~l~g~~~~~------~G------~i~i~g~~~~~~~~--- 455 (1178)
..|+|+||+|++|++++|+|+||||||||+ +.+.+...+. +| .+.+|+.++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 3333333222 23 24455544432210
Q ss_pred -------HHHh-------------------------------cceEEEcCCCCCC-------------------------
Q 001041 456 -------QWIR-------------------------------KKIGLVSQEPVLF------------------------- 472 (1178)
Q Consensus 456 -------~~~r-------------------------------~~i~~v~Q~~~l~------------------------- 472 (1178)
+.+| +..|+++|+..++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 1111 2356777776544
Q ss_pred --------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHHHHHHHHhccCC--
Q 001041 473 --------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQRIAIARAILKDP-- 541 (1178)
Q Consensus 473 --------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqri~lARal~~~~-- 541 (1178)
..|++|++.|.......++.. +.++.+ |+.. .+++.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~---------~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTL---------QVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHH---------HHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHH---------HHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 246777777643321112222 223333 4443 468889999999999999999999875
Q ss_pred -CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eCCEEEEecChhHHhcCCCc
Q 001041 542 -RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 542 -~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~ 613 (1178)
++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++|+|++.|+|+++++++ +
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~-~ 905 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP-H 905 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT-T
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC-c
Confidence 7999999999999999999999998875 489999999999999999999999 899999999999999874 3
Q ss_pred hHH
Q 001041 614 AYS 616 (1178)
Q Consensus 614 ~~~ 616 (1178)
.|.
T Consensus 906 syt 908 (916)
T 3pih_A 906 SYT 908 (916)
T ss_dssp CHH
T ss_pred hHH
Confidence 443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.2e-28 Score=299.61 Aligned_cols=211 Identities=25% Similarity=0.394 Sum_probs=156.4
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHH-HhccC-------CC---------------
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISL-IERFY-------DP--------------- 438 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~-l~g~~-------~~--------------- 438 (1178)
..++++|+++ ..|+|+||+|++||+++|+|+||||||||++. |.|.+ .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999975 16999999999999999999999999999996 66543 22
Q ss_pred ---CCC-------cEEECCeecCCCCH----------HHHhcceEEEc---------CC---------------------
Q 001041 439 ---QAG-------EVLIDGINLKEFQL----------QWIRKKIGLVS---------QE--------------------- 468 (1178)
Q Consensus 439 ---~~G-------~i~i~g~~~~~~~~----------~~~r~~i~~v~---------Q~--------------------- 468 (1178)
.+| .|.+||.++...+. +.+|..++++| +.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 356 57889888754332 33443332222 11
Q ss_pred -CCCC-------------------------cccHHHHHh--------cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc
Q 001041 469 -PVLF-------------------------TGSIKDNIA--------YGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514 (1178)
Q Consensus 469 -~~l~-------------------------~~ti~~ni~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t 514 (1178)
-.++ .-+|.||+. |... . .... ...+.++.+ |+..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~--~-~~~~------~~~~~L~~~--gL~~ 721 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFAD--E-SAIF------RALDTLREV--GLGY 721 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTT--S-HHHH------HHHHHHHHT--TCTT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhc--c-hHHH------HHHHHHHHc--CCCc
Confidence 0111 124555543 3211 0 1111 123344554 5555
Q ss_pred -hhcCCCCCCChHHHHHHHHHHHhccC---CCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCE
Q 001041 515 -LVGEHGTQLSGGQKQRIAIARAILKD---PRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADM 589 (1178)
Q Consensus 515 -~~~~~g~~lSgGqkqri~lARal~~~---~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~ 589 (1178)
.++....+||||||||++|||+|.++ |++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+
T Consensus 722 ~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDr 801 (842)
T 2vf7_A 722 LRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDW 801 (842)
T ss_dssp SBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred ccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCE
Confidence 36788889999999999999999996 79999999999999999999999998874 58999999999999988999
Q ss_pred EEEE------eCCEEEEecChhHHhcCC
Q 001041 590 IAVI------HRGKIVEKGTHSKLVEDP 611 (1178)
Q Consensus 590 i~~l------~~G~i~~~g~~~~l~~~~ 611 (1178)
|++| ++|+|++.|+++++.+.+
T Consensus 802 ii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 802 VLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 9999 699999999999998763
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-27 Score=293.78 Aligned_cols=211 Identities=26% Similarity=0.388 Sum_probs=157.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccC-------CCCCC-------------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFY-------DPQAG------------- 441 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~-------~~~~G------------- 441 (1178)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++.|+ |.+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588888741 2699999999999999999999999999999864 221 12233
Q ss_pred cEEECCeecCCCC---HH-------HHh---------cceEEEcCCCCC---------------------C---------
Q 001041 442 EVLIDGINLKEFQ---LQ-------WIR---------KKIGLVSQEPVL---------------------F--------- 472 (1178)
Q Consensus 442 ~i~i~g~~~~~~~---~~-------~~r---------~~i~~v~Q~~~l---------------------~--------- 472 (1178)
.|.+||.++.... +. .+| +.++|++|..-+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 3778888774321 11 111 246888885321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChH
Q 001041 473 -------------------------TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGG 526 (1178)
Q Consensus 473 -------------------------~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgG 526 (1178)
..|+.||+.|... . ....+ ..+.++.+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIKR------KLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence 1256666665322 1 11111 12334444 5665 567888899999
Q ss_pred HHHHHHHHHHhccCC---CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEEEE------eCC
Q 001041 527 QKQRIAIARAILKDP---RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIAVI------HRG 596 (1178)
Q Consensus 527 qkqri~lARal~~~~---~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~~l------~~G 596 (1178)
||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999998865 579999999999999889999999 789
Q ss_pred EEEEecChhHHhcCCC
Q 001041 597 KIVEKGTHSKLVEDPE 612 (1178)
Q Consensus 597 ~i~~~g~~~~l~~~~~ 612 (1178)
+|++.|+++++.+.+.
T Consensus 930 ~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 930 QIVAVGTPEEVAEVKE 945 (972)
T ss_dssp SEEEEESHHHHHTCTT
T ss_pred EEEEecCHHHHHhCch
Confidence 9999999999987643
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.3e-27 Score=276.27 Aligned_cols=201 Identities=19% Similarity=0.288 Sum_probs=151.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC--------------------------------------CCCC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD--------------------------------------PQAG 441 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~--------------------------------------~~~G 441 (1178)
..+++++|++.+| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3789999999999 999999999999999999977664 3468
Q ss_pred cEEECCeecCCCCHHHHhcc-eEEEcCCCCCCcccHHHHHhcCCCCCCH--H-------HHHHHHH--------------
Q 001041 442 EVLIDGINLKEFQLQWIRKK-IGLVSQEPVLFTGSIKDNIAYGKDDATT--E-------EIRVATE-------------- 497 (1178)
Q Consensus 442 ~i~i~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~ti~~ni~~~~~~~~~--~-------~~~~~~~-------------- 497 (1178)
++.+||.+++..++.++... +++++|++.++..+..++..|-...... . ++.++.+
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 89999999987777777766 8999999987766555444332111100 0 0000000
Q ss_pred ---------------------------------H-hcHHHHHHhC--CC----------------Cccc---hhcCCCCC
Q 001041 498 ---------------------------------L-ANAAKFIDKL--PQ----------------GIDT---LVGEHGTQ 522 (1178)
Q Consensus 498 ---------------------------------~-~~~~~~i~~~--~~----------------g~~t---~~~~~g~~ 522 (1178)
. ..+.+.+..+ |. |.+. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0 0111122222 11 2221 34444434
Q ss_pred --------CChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEE
Q 001041 523 --------LSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1178)
Q Consensus 523 --------lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~ 592 (1178)
||||||||++|||+++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998778999999999999888999999
Q ss_pred E----eCCEEEEe
Q 001041 593 I----HRGKIVEK 601 (1178)
Q Consensus 593 l----~~G~i~~~ 601 (1178)
| ++|+++..
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 9 99998754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-27 Score=253.41 Aligned_cols=134 Identities=34% Similarity=0.650 Sum_probs=123.9
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
.+|+++||+|+|+++ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 469999999999421 3469999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|++|||.++. +..++++++++++.+++.+++.++|+|+++.+
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 139 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIV 139 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTC-TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBC
T ss_pred EEEEeCCCccccccHHHHHhccC-CCCCHHHHHHHHHHhChHHHHHhCcchhhhhh
Confidence 99999999999999999999974 35678899999999999999999999999865
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-30 Score=304.26 Aligned_cols=180 Identities=13% Similarity=0.135 Sum_probs=144.0
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-c-EEECCeecCCCCHHHHhcceEEEcCCCCCC----cccH
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-E-VLIDGINLKEFQLQWIRKKIGLVSQEPVLF----TGSI 476 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~-i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~----~~ti 476 (1178)
.++||++++|++++|+||||||||||+++|+|++.|++| + |.+|| + .|+.++|+||++.+| ..|+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~~vpq~~~l~~~~~~~tv 199 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIFTVPGCISATPISDILDA 199 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSSSCSSCCEEEECCSCCCT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCeeeeccchhhcccccccch
Confidence 378999999999999999999999999999999999999 9 99998 1 367899999998543 3589
Q ss_pred HHHHhcCCCCC----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH--hccCCCE----EEE
Q 001041 477 KDNIAYGKDDA----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA--ILKDPRI----LLL 546 (1178)
Q Consensus 477 ~~ni~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa--l~~~~~i----lll 546 (1178)
+||+ |+.... ..+++.. .+..+ |++.... ..+||||||||++|||| |+.+|++ |||
T Consensus 200 ~eni-~~~~~~~~~~~~~~~~~---------ll~~~--gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlL 265 (460)
T 2npi_A 200 QLPT-WGQSLTSGATLLHNKQP---------MVKNF--GLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIV 265 (460)
T ss_dssp TCTT-CSCBCBSSCCSSCCBCC---------EECCC--CSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEE
T ss_pred hhhh-cccccccCcchHHHHHH---------HHHHh--CCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEE
Confidence 9999 764310 1111111 11111 4544443 67899999999999999 9999999 999
Q ss_pred eC-CCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcc------hh-hccCE-----EEEEe-CCEEEEecChhHHhc
Q 001041 547 DE-ATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS------TV-RNADM-----IAVIH-RGKIVEKGTHSKLVE 609 (1178)
Q Consensus 547 De-~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~------~~-~~~d~-----i~~l~-~G~i~~~g~~~~l~~ 609 (1178)
|| ||++||+. .+.+.+.+++. +.|+|+|+|+.+ .+ ..||+ |++|+ +|+++ .|+++++.+
T Consensus 266 DEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 266 DTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp ECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHH
T ss_pred eCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhh
Confidence 99 99999999 66666666653 689999999987 44 35899 99999 99999 999988743
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-26 Score=248.18 Aligned_cols=134 Identities=40% Similarity=0.664 Sum_probs=122.6
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++||+|+|++.+..++|+||||+|++||++||+||||||||||+++|.|+++| +|+|.+||.|+.+++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999743224699999999999999999999999999999999999997 8999999999999998999999
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|++|||.++.. ..+++++.++++.+++.+++..+|+|+||.+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~ 149 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIV 149 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEE
T ss_pred EEEEcCCCcccccCHHHHHhccCC-CCCHHHHHHHHHHhCCHHHHHhccccccccc
Confidence 999999999999999999999743 4578889999999999999999999999864
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.8e-26 Score=249.71 Aligned_cols=132 Identities=36% Similarity=0.675 Sum_probs=121.6
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+|+|++ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 346999999999999999999999999999999999999999999999999999988888999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+|||+|.+|++|++|||.++..+..++++++++++.+++++++.++|+|+++.+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~ 133 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEV 133 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEE
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchh
Confidence 999999999999999999972235678899999999999999999999998864
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=247.61 Aligned_cols=136 Identities=41% Similarity=0.705 Sum_probs=122.3
Q ss_pred cccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
.+.|+++||+|+|+++++.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|++||.|+.+++...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 45699999999996422246999999999999999999999999999999999999999999999999999998889999
Q ss_pred hccccccccccccccHHHHHhcCCCCCCCH-HHHHHHHHHcCchHHHhhccccccccc
Q 001041 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATE-AEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~asd-eei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+|++|||+|.+|++|++|||.++.. ..++ +++.++++.+++++++..+|+|+++.+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~ 150 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLT-RTPTMEEITAVAMESGAHDFISGFPQGYDTEV 150 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCS-SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBC
T ss_pred cEEEEecCCccccccHHHHHhhhcc-cCChHHHHHHHHHHHhHHHHHHhhhcchhhhh
Confidence 9999999999999999999999743 3444 778889999999999999999998754
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=272.14 Aligned_cols=158 Identities=30% Similarity=0.448 Sum_probs=115.9
Q ss_pred HHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC------CC-CCHHHHHHHHHHhcHH
Q 001041 430 SLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK------DD-ATTEEIRVATELANAA 502 (1178)
Q Consensus 430 ~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~------~~-~~~~~~~~~~~~~~~~ 502 (1178)
.+.-+-+.|..|+|.++|.++.++.. .|+.+|+.|.. .+ ....+.....+ ...
T Consensus 386 ~C~g~rl~~~~~~V~i~G~~i~~~~~------------------~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~--~~~ 445 (916)
T 3pih_A 386 VCGGRRLNREALSVKINGLNIHEFTE------------------LSISEELEFLKNLNLTEREREIVGELLKEIE--KRL 445 (916)
T ss_dssp TTCSCCBCTTGGGEEETTEEHHHHHH------------------SBHHHHHHHHHSCCCCTTTTTTHHHHHHHHH--HHH
T ss_pred hcccccCChHhcCcEECCccHHHhhh------------------CCHHHHHHHHHhccCcHHHHHHHHhhHHHHH--HHH
Confidence 33445678889999999988754332 24444443311 00 01111111111 112
Q ss_pred HHHHhCCCCccch-hcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEe
Q 001041 503 KFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVA 578 (1178)
Q Consensus 503 ~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~it 578 (1178)
+.+..+ |++.. .+....+||||||||++|||||.++|+ +|||||||++||+...+.+.+.++++. +++|+|+|+
T Consensus 446 ~~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 446 EFLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 344443 66543 466678899999999999999999877 999999999999999999999998875 478999999
Q ss_pred cCcchhhccCEEEEE------eCCEEEEecChhHHhc
Q 001041 579 HRLSTVRNADMIAVI------HRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 579 H~~~~~~~~d~i~~l------~~G~i~~~g~~~~l~~ 609 (1178)
|+++.+..||+|++| ++|++++.|+++++++
T Consensus 524 Hd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 999999899999999 8999999999988764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=266.54 Aligned_cols=149 Identities=26% Similarity=0.403 Sum_probs=111.6
Q ss_pred CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC-CCHHH-------HHHHHHHhcHHHHHHhC
Q 001041 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD-ATTEE-------IRVATELANAAKFIDKL 508 (1178)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~-~~~~~-------~~~~~~~~~~~~~i~~~ 508 (1178)
.|....|.++|.++. .+...||.|++.|...- .+.++ +.+..+.. +.+..+
T Consensus 433 ~~~~l~v~~~g~~i~------------------q~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl---~~L~~v 491 (972)
T 2r6f_A 433 KKESLAVLVGGKHIG------------------EVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL---GFLQNV 491 (972)
T ss_dssp CTTTTTEESSSCBHH------------------HHHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH---HHHHHH
T ss_pred CHHHheeEECCCcHH------------------HHhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH---HHhhhC
Confidence 455667888886542 24567888888874221 12211 11112221 223332
Q ss_pred CCCccch-hcCCCCCCChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchh
Q 001041 509 PQGIDTL-VGEHGTQLSGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV 584 (1178)
Q Consensus 509 ~~g~~t~-~~~~g~~lSgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~ 584 (1178)
|++.. .+....+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|+++. .|.|+|+|+|+++.+
T Consensus 492 --GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i 569 (972)
T 2r6f_A 492 --GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTM 569 (972)
T ss_dssp --TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHH
T ss_pred --CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 66643 56677899999999999999999984 9999999999999999999999998875 478999999999999
Q ss_pred hccCEEEEE------eCCEEEEecChhHHh
Q 001041 585 RNADMIAVI------HRGKIVEKGTHSKLV 608 (1178)
Q Consensus 585 ~~~d~i~~l------~~G~i~~~g~~~~l~ 608 (1178)
..||+|++| ++|++++.|+++++.
T Consensus 570 ~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 570 LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999 789999999887654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.6e-25 Score=251.05 Aligned_cols=134 Identities=25% Similarity=0.459 Sum_probs=123.9
Q ss_pred ccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
..+.|+++||+++|+.+ +.++|+||||+|++||.+||+||||||||||+++|+|+++ ++|+|+|||+|+.+++.+.+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 45689999999999633 3569999999999999999999999999999999999998 899999999999999999999
Q ss_pred HhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
++|++|||++.||++|++|||.+.. ...+++++++++.+++.+++.++|.+|+|.+
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~--~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i 149 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA--AHSDQEIWKVADEVGLRSVIEQFPGKLDFVL 149 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC--CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEE
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc--ccCHHHHHHHHHHhCCHHHHhhccccccccc
Confidence 9999999999999999999998642 4678999999999999999999999998865
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=246.14 Aligned_cols=195 Identities=19% Similarity=0.261 Sum_probs=139.8
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC----------------------------------------------
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFY---------------------------------------------- 436 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~---------------------------------------------- 436 (1178)
+++++++.+| +++|+|+||||||||+.+|..++
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3578888999 99999999999999999998443
Q ss_pred ----CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCC----------------HHHHHHH
Q 001041 437 ----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDAT----------------TEEIRVA 495 (1178)
Q Consensus 437 ----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~----------------~~~~~~~ 495 (1178)
.+.+|.+.+||.+++..+...+...+++.||+..++ .|++.+|+... |... .+++.+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld~~~~~~~~~~~y~rv~e~ 173 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESSKHPTSLVPRGSYQRVNES 173 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC----------------------CHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 233468899998876555666667899999988765 89999998753 3211 0111111
Q ss_pred HHHh------------cH-HHHHHhCCCCccchhc------CCCCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCC
Q 001041 496 TELA------------NA-AKFIDKLPQGIDTLVG------EHGTQLSGGQKQRIAIARAIL----KDPRILLLDEATSA 552 (1178)
Q Consensus 496 ~~~~------------~~-~~~i~~~~~g~~t~~~------~~g~~lSgGqkqri~lARal~----~~~~illlDe~ts~ 552 (1178)
.... .+ .+....++.|+++.++ .....||||||||++||||+. .+|++|||||||++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~ 253 (322)
T 1e69_A 174 FNRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP 253 (322)
T ss_dssp HHHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS
T ss_pred HHHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC
Confidence 1100 00 0011234445555432 234689999999999999996 78999999999999
Q ss_pred CCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEE--EEEeCCEEE
Q 001041 553 LDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMI--AVIHRGKIV 599 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i--~~l~~G~i~ 599 (1178)
||+.....+.+.++++.+++|+|++||+.+.+..||++ ++|++|+..
T Consensus 254 LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~ 302 (322)
T 1e69_A 254 LDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSA 302 (322)
T ss_dssp CCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEE
Confidence 99999999999998876678999999998888889987 788887543
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-26 Score=240.34 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=100.1
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
..+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++. .+....|++++|+||+| +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchhhhcceEEecCCH-------HH
Confidence 4588985 89999999999999999999999999 999999943 3332 12223577899999998 67
Q ss_pred HH-hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHh
Q 001041 479 NI-AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557 (1178)
Q Consensus 479 ni-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~ 557 (1178)
|+ .++.+. .+.+........+.+.++. | | |||||++||||++.+|++|||||||++ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 76 332110 0000000000111222211 1 1 999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCC
Q 001041 558 EKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1178)
Q Consensus 558 ~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1178)
.+.+.+.++++.+++|+| |||+++.+.. +...++|
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~~---~~~~~~G 170 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVDL---PGGQKSG 170 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------C
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHhC---cCCCCCc
Confidence 788888887764478888 9999886543 3334555
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.1e-24 Score=218.85 Aligned_cols=149 Identities=19% Similarity=0.264 Sum_probs=107.7
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCC--CCcccHHHHHh
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV--LFTGSIKDNIA 481 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~ni~ 481 (1178)
|+||++++||+++|+||||||||||++++.+ |...++ .+.+| ++++|++. .+.+++.+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~--------~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVIS--------SDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEE--------HHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEc--------cHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 222222 22333 67788762 23344333332
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhH---
Q 001041 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE--- 558 (1178)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~--- 558 (1178)
. .. ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ~---------------~~-----~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y---------------IV-----SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H---------------HH-----HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H---------------HH-----HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 00 011223555555443 45699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHh-cCCeEEEEecCcchhhccCEE
Q 001041 559 -------------KVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1178)
Q Consensus 559 -------------~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1178)
+.+.+.++++. ++.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 66777765543 489999999999999877764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=233.91 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=75.6
Q ss_pred CCCCCCChHHHHHHHHHHHhc------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEE
Q 001041 518 EHGTQLSGGQKQRIAIARAIL------KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1178)
....+||||||||++||||+. .+|++|||||||++||+.+...+.+.++++. .++|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 455679999999999999999 7999999999999999999999999998875 478999999999998889999
Q ss_pred EEEeCCEEEE
Q 001041 591 AVIHRGKIVE 600 (1178)
Q Consensus 591 ~~l~~G~i~~ 600 (1178)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999974
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=217.79 Aligned_cols=120 Identities=23% Similarity=0.414 Sum_probs=107.3
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++||+|+|+.+ +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 34699999999999999999999999999999999999999999999999 4
Q ss_pred ccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1121 MGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1121 IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
|++|||+|.+|++|++|||.++. ...+..+.++++..++.+++..+|.+++|.+
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 124 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVL 124 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGSCB
T ss_pred EEEEecCCcccCCCHHHHhhccC--CcChHHHHHHHHHhCcHHHHHhCcccccccc
Confidence 99999999999999999999974 2345567778888999999999999988754
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.6e-23 Score=222.15 Aligned_cols=122 Identities=25% Similarity=0.407 Sum_probs=102.7
Q ss_pred EEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH----
Q 001041 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---- 1117 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L---- 1117 (1178)
|+++||+++|+.++ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996332 2469999999999999999999999999999999999999999999999999999988765
Q ss_pred HHhccccccccccccc-cHHHHHhcCC----CCCCC----HHHHHHHHHHcCchHH
Q 001041 1118 RQQMGLVSQEPVLFND-TIRANIAYGK----GGDAT----EAEIQAASEMANAHKF 1164 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~----~~~as----deei~~Al~~A~~~df 1164 (1178)
|++|++|||+|.+|.+ |++||+.++. ....+ .+++.++++..++.+.
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 4579999999999987 9999998631 00122 3457778888887654
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-25 Score=235.95 Aligned_cols=166 Identities=15% Similarity=0.172 Sum_probs=118.5
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH-HHHhcceEEEcCCCCCCc-----
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL-QWIRKKIGLVSQEPVLFT----- 473 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~-~~~r~~i~~v~Q~~~l~~----- 473 (1178)
..|+|+||++++|++++|+||||||||||+++|+|++ | |+|.+ |+++...+. ...+..++|++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 5 99999 877654332 234568999999986553
Q ss_pred ------ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHH-----HHHhccCCC
Q 001041 474 ------GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAI-----ARAILKDPR 542 (1178)
Q Consensus 474 ------~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~l-----ARal~~~~~ 542 (1178)
+++++| .+|.+ .++++++++. +....++ .+||||||||++| ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~~------------~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKEQ------------NKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHHT------------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHhC------------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 333444 22322 2333333322 2222232 5799999999999 899999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+++|||||+++|.+++..+++.+....+++| ++| +..+|.|+++++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988766667 677 577999988764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-22 Score=216.78 Aligned_cols=118 Identities=25% Similarity=0.406 Sum_probs=104.7
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+|+|+.+ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+|| +|+
T Consensus 4 l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 4 ITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp EEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred EEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 8999999999632 34699999999999999999999999999999999999999999999999 399
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+|||+|.+|+.|++|||.++.. ..+++..++++..++.+.+..+|.|++|.+
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 121 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQ--LEEPYYRSVIQACALLPDLEILPSGDRTEI 121 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSC--CCTTHHHHHHHHTTCHHHHTTSTTGGGSEE
T ss_pred EEcCCCcCCCcCHHHHhhCccc--cCHHHHHHHHHHHhhHHHHHhccccccccc
Confidence 9999999999999999999742 344567778888899999999998887653
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-22 Score=222.50 Aligned_cols=128 Identities=20% Similarity=0.451 Sum_probs=107.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1178)
-|+++||+++|+++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+. +.+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999632 35999999999999999999999999999999999999999999999999994 445667899
Q ss_pred hcccccccc--ccccccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhcccc
Q 001041 1120 QMGLVSQEP--VLFNDTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1120 ~IsiV~Qdp--~LF~gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~g 1171 (1178)
+|++|||+| .+|..|++|||.++.. ...+ ++.+.++++..++.++..+.|..
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHC 143 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCccc
Confidence 999999998 5889999999987521 1123 34577888999988776655543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-23 Score=216.99 Aligned_cols=147 Identities=17% Similarity=0.211 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~ 493 (1178)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ +..+|+. +.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999984 667777654433224567899999987 2233331 1100
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH-----hccCCCEEEEeC--CCCCCCHHhHHHHHHHHH
Q 001041 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA-----ILKDPRILLLDE--ATSALDAESEKVVQEALD 566 (1178)
Q Consensus 494 ~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa-----l~~~~~illlDe--~ts~lD~~~~~~i~~~i~ 566 (1178)
++ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||+++|+...+.+.+.++
T Consensus 64 --------------~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 64 --------------FT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp --------------CC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred --------------CC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 00 0134667778999999999999996 999999999999 999999999998888887
Q ss_pred HHhcCCeEEEEec---Ccchhhc-cCEEEEEeCCEEEE
Q 001041 567 RIMVNRTTVIVAH---RLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 567 ~~~~~~t~i~itH---~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
+ .+.|+|+++| +.+.+.. ||+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4667999996 5566654 676 5677776
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-22 Score=217.67 Aligned_cols=126 Identities=23% Similarity=0.379 Sum_probs=110.6
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
-|+++||+++|. +.++|+||||+|++||.+|||||||||||||+++|.|+++|++|+|.+||.|+.+.+.+.+|+.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 489999999996 34699999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccc-ccccHHHHHhcCCCC---CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1122 GLVSQEPVL-FNDTIRANIAYGKGG---DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1122 siV~Qdp~L-F~gTIreNI~~g~~~---~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
++|+|++.+ |+.|++||+.++... ...++++.++++..++.++..+.|.
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR 140 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc
Confidence 999999977 788999999986421 2335678889999988776555443
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.86 E-value=3.1e-22 Score=226.57 Aligned_cols=132 Identities=22% Similarity=0.355 Sum_probs=110.6
Q ss_pred ccEEEeeeEEeCCCCC-CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH--
Q 001041 1041 GEIELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL-- 1117 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~-~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L-- 1117 (1178)
.-|+++||+++|+.+. ..++|+||||+|++||.+||+||||||||||+++|.|++.|++|+|.+||.|+..++...+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996421 2469999999999999999999999999999999999999999999999999999987654
Q ss_pred -HHhccccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1118 -RQQMGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 -R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|++|||++.||.. |++|||.++.. ...+ ++.+.++++..++.++..+.|..|
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~L 164 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 164 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTS
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 7899999999999865 99999987521 1122 345788899999988776666543
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-22 Score=216.22 Aligned_cols=99 Identities=23% Similarity=0.502 Sum_probs=90.9
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH-Hh
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR-QQ 1120 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR-~~ 1120 (1178)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+.+...++ ++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 4699999999999999999999999999999999999999999999999999988877664 45
Q ss_pred ccccccccccccc-cHHHHHhcCC
Q 001041 1121 MGLVSQEPVLFND-TIRANIAYGK 1143 (1178)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~ 1143 (1178)
|++|||+|.+|.+ |++||+.++.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~ 106 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGG
T ss_pred EEEEecCCccCCCCcHHHHHHHhh
Confidence 9999999999987 9999999863
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.85 E-value=6e-22 Score=216.91 Aligned_cols=126 Identities=28% Similarity=0.447 Sum_probs=106.7
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1178)
-|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 499999999995 246999999999999999999999999999999999999999999999999985 345667899
Q ss_pred hccccccccccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1120 QMGLVSQEPVLFND-TIRANIAYGK--GGDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~--~~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|++|||++.+|.. |++|||.++. ....+ ++++.++++..++.++..+.|.
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~ 158 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPD 158 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChh
Confidence 99999999999987 9999998752 11122 3467888999998877655443
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-22 Score=215.63 Aligned_cols=126 Identities=17% Similarity=0.358 Sum_probs=107.2
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+ ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 5699999999995 3469999999999999999999999999999999999999999999999999976 55678899
Q ss_pred ccccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccc
Q 001041 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~ 1170 (1178)
|++|||+|.+|.+ |++||+.++.. ...+ ++++.++++..++.++..+.|.
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 145 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 145 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChh
Confidence 9999999999987 99999987420 0112 2467888999998877655443
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.3e-21 Score=215.67 Aligned_cols=127 Identities=21% Similarity=0.399 Sum_probs=108.0
Q ss_pred EEEeeeEEeCCCCCC--ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1043 IELHHVSFKYPSRPD--VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~--~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|+++||+++|+.+.. .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+. .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 799999999962111 4699999999999999999999999999999999999999999999999998753 78899
Q ss_pred cccccccc--ccccccHHHHHhcCCC----CCCCHHHHHHHHHHcCch--HHHhhccccc
Q 001041 1121 MGLVSQEP--VLFNDTIRANIAYGKG----GDATEAEIQAASEMANAH--KFICSLQQVR 1172 (1178)
Q Consensus 1121 IsiV~Qdp--~LF~gTIreNI~~g~~----~~asdeei~~Al~~A~~~--dfI~~LP~gl 1172 (1178)
|++|||+| .+|+.|++|||.++.. ....++++.++++..++. ++..+.|..|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 139 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL 139 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGS
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhC
Confidence 99999997 5788999999998632 122356789999999998 8877766543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-22 Score=212.15 Aligned_cols=126 Identities=21% Similarity=0.291 Sum_probs=105.3
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR 1118 (1178)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998887653 44
Q ss_pred -Hhcccccccccccc-ccHHHHHhcCCC--C---CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1119 -QQMGLVSQEPVLFN-DTIRANIAYGKG--G---DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1119 -~~IsiV~Qdp~LF~-gTIreNI~~g~~--~---~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
++|++|||++.+|. -|++||+.++.. . ...++++.++++..++.++..+.|.
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPY 139 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGG
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 78999999999986 599999987421 0 1123567888999988776554443
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-23 Score=237.62 Aligned_cols=131 Identities=19% Similarity=0.237 Sum_probs=110.0
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++.....++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe--------------
Confidence 7899999999999999999999999999999999999999999999865 222222344555553
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHH
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKV 560 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~ 560 (1178)
| |||+||++|||||..+|++++|||||+. .
T Consensus 224 ------------------------------g-------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 224 ------------------------------G-------------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp ------------------------------B-------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred ------------------------------C-------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 0 8999999999999999999999999982 2
Q ss_pred HHHHHHHHhcCC-eEEEEecCcchhhccCEEEEEeCCE
Q 001041 561 VQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 561 i~~~i~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
+.+.++.+..++ |+|+++|+.+....|||+++|++|+
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 445666655555 7999999999878899999998875
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-21 Score=211.12 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=107.3
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++ ++|+|+||+|++||.+||+||||||||||+++|.|+++|+ |+|.+||.++.+.+...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 3999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccccccc-cHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|||++.+|.+ |++||+.++.....+++++.++++..++.++..+.|.
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 125 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGG
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChh
Confidence 99999998865 9999999874222247889999999999887665443
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-21 Score=216.87 Aligned_cols=125 Identities=18% Similarity=0.281 Sum_probs=105.5
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC--CCChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ--KLQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~--~i~l~~LR~ 1119 (1178)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+. +.+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4999999999963 46999999999999999999999999999999999999999999999999998 788888999
Q ss_pred hcccccccccc-ccc--cHHHHHhcCCCC------CCC---HHHHHHHHHHcCchHHHhhcc
Q 001041 1120 QMGLVSQEPVL-FND--TIRANIAYGKGG------DAT---EAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1120 ~IsiV~Qdp~L-F~g--TIreNI~~g~~~------~as---deei~~Al~~A~~~dfI~~LP 1169 (1178)
+|++|||++.+ |.. |++|||.++... ... .+++.++++..++.++..+.|
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 159 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI 159 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh
Confidence 99999999975 555 999999986311 112 345788899998877655444
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.2e-22 Score=208.51 Aligned_cols=114 Identities=21% Similarity=0.412 Sum_probs=100.7
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|+ + ++|+||||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||.++. .+|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 5999999999999999999999999999999999999999999999999986 368899
Q ss_pred cccccccccccc-cHHHHHhcCCC--C-CCCHHHHHHHHHHcCchHH
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKG--G-DATEAEIQAASEMANAHKF 1164 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~--~-~asdeei~~Al~~A~~~df 1164 (1178)
++|||+|.+|.+ |++|||.++.. . ...++++.++++..++.++
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 127 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 127 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC
Confidence 999999999987 99999987521 1 2236788999999988665
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-21 Score=212.36 Aligned_cols=125 Identities=14% Similarity=0.256 Sum_probs=105.0
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-HHHHHh
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KWLRQQ 1120 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l-~~LR~~ 1120 (1178)
-|+++||+++|++ .++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+. +.+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999953 469999999999999999999999999999999999999999999999999988765 346788
Q ss_pred cccccccccccc-ccHHHHHhcCCCC---C-----------CC----HHHHHHHHHHcCchHHHhhcc
Q 001041 1121 MGLVSQEPVLFN-DTIRANIAYGKGG---D-----------AT----EAEIQAASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1121 IsiV~Qdp~LF~-gTIreNI~~g~~~---~-----------as----deei~~Al~~A~~~dfI~~LP 1169 (1178)
|++|||++.+|. .|++||+.++... . .+ .+++.++++..++.++..+.|
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 999999999886 6999999986321 1 11 245778888888877655444
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-21 Score=212.29 Aligned_cols=125 Identities=21% Similarity=0.317 Sum_probs=105.6
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC----------CC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ----------KL 1112 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~----------~i 1112 (1178)
|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+. ++
T Consensus 7 l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 83 (262)
T 1b0u_A 7 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 83 (262)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred EEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccccc
Confidence 89999999995 246999999999999999999999999999999999999999999999999986 24
Q ss_pred Ch---HHHHHhccccccccccccc-cHHHHHhcCC--CCCCC----HHHHHHHHHHcCchHH-Hhhccc
Q 001041 1113 QL---KWLRQQMGLVSQEPVLFND-TIRANIAYGK--GGDAT----EAEIQAASEMANAHKF-ICSLQQ 1170 (1178)
Q Consensus 1113 ~l---~~LR~~IsiV~Qdp~LF~g-TIreNI~~g~--~~~as----deei~~Al~~A~~~df-I~~LP~ 1170 (1178)
+. ..+|++|++|||++.+|.. |++|||.++. ....+ ++++.++++..++.++ ..+.|.
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 152 (262)
T 1b0u_A 84 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPV 152 (262)
T ss_dssp CHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGG
T ss_pred ChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcc
Confidence 43 4578899999999999977 9999998742 11112 3567889999999888 655444
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-21 Score=220.63 Aligned_cols=128 Identities=30% Similarity=0.511 Sum_probs=107.7
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC--CChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK--LQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~--i~l~~LR~ 1119 (1178)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+ ......|+
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 389999999995 3469999999999999999999999999999999999999999999999999933 23345578
Q ss_pred hcccccccccccc-ccHHHHHhcCCCC-C----CCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1120 QMGLVSQEPVLFN-DTIRANIAYGKGG-D----ATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~-gTIreNI~~g~~~-~----asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|++|||++.||. -|++|||.|+... . ..++++.++++..++.++..+.|..|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 139 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHEL 139 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGS
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 9999999999996 5999999997421 1 12356888999999988877666543
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-21 Score=221.32 Aligned_cols=126 Identities=21% Similarity=0.405 Sum_probs=108.4
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|+ +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+.+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999988876 4789
Q ss_pred cccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++|+|++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~L 134 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGS
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHC
Confidence 999999999965 99999998621 0122 346788999999988877766544
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-21 Score=218.60 Aligned_cols=125 Identities=30% Similarity=0.501 Sum_probs=107.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+++.. +++|+
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (362)
T 2it1_A 4 IKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78 (362)
T ss_dssp EEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEE
Confidence 89999999995 23699999999999999999999999999999999999999999999999999887764 57899
Q ss_pred ccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (362)
T 2it1_A 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQL 134 (362)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhC
Confidence 99999999975 99999998621 0112 356888999999988776666543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7e-23 Score=237.01 Aligned_cols=167 Identities=16% Similarity=0.178 Sum_probs=127.9
Q ss_pred CccccceeEEEeCCC--------------------EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH
Q 001041 399 EQIFSGFSISISSGT--------------------TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~--------------------~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
+.+|+++||++++|+ .++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997653
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH--HHHHHHHHHH
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARA 536 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG--qkqri~lARa 536 (1178)
| .++++|++...+.|++||+.++.+.. ++.+.++..++.+ .+..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~~---~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTNF---PPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSSC---CHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchHH---HHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 1 28899998655789999987764322 2333344333211 12211 2 8999 9999999999
Q ss_pred hcc----------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-----c-----CCeEEEEecCcch--hhc-cCEE
Q 001041 537 ILK----------DPRILLLDEATSALDAESEKVVQEALDRIM-----V-----NRTTVIVAHRLST--VRN-ADMI 590 (1178)
Q Consensus 537 l~~----------~~~illlDe~ts~lD~~~~~~i~~~i~~~~-----~-----~~t~i~itH~~~~--~~~-~d~i 590 (1178)
+.+ +|++++|||||++||+.+.+.+.+.++++. + .+++++.||.++. +.. +|+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999888888877652 1 2456677898775 443 6655
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.5e-21 Score=216.74 Aligned_cols=128 Identities=26% Similarity=0.464 Sum_probs=108.4
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
..|+++||+++|++ +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+.+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2359999999999999999999999999999999999999999999999999987664 4789
Q ss_pred ccccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|||++.||.. |++|||.|+.. ...+ ++++.++++..++.++..+.|..|
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 146 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHEL 146 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccC
Confidence 9999999999975 99999998521 0112 456889999999988877666543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.4e-21 Score=218.20 Aligned_cols=125 Identities=23% Similarity=0.396 Sum_probs=108.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++.. |++|+
T Consensus 4 l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig 78 (359)
T 2yyz_A 4 IRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVG 78 (359)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEE
T ss_pred EEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEE
Confidence 89999999995 34699999999999999999999999999999999999999999999999999887764 67899
Q ss_pred ccccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..|
T Consensus 79 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~L 134 (359)
T 2yyz_A 79 MVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQL 134 (359)
T ss_dssp EECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999965 999999997321 122 346889999999988877666543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.4e-21 Score=216.52 Aligned_cols=125 Identities=22% Similarity=0.409 Sum_probs=102.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+++.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 399999999995 34699999999999999999999999999999999999999999999999999887764 6789
Q ss_pred cccccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhcccc
Q 001041 1122 GLVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~g 1171 (1178)
++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 141 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 141 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTT
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhh
Confidence 999999999965 999999997421 122 24678899999998887665543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-21 Score=216.22 Aligned_cols=124 Identities=23% Similarity=0.430 Sum_probs=107.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|+ +. +|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+++. .|++|+
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 34 9999999999999999999999999999999999999999999999999987554 578999
Q ss_pred ccccccccccc-cHHHHHhcCCC--CCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKG--GDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~--~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||++.||.. |++|||.|+.. ....++++.++++..++.++..+.|..|
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 128 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99999999976 99999998621 0112378999999999988877666543
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-22 Score=225.02 Aligned_cols=158 Identities=15% Similarity=0.231 Sum_probs=128.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccEEEeeeEEeCCC
Q 001041 975 GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFKYPS 1054 (1178)
Q Consensus 975 g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~ 1054 (1178)
+..+.+...+|+.+... ..++..+..+...++++..+.+|+.++++.+++..... . ..++..+.|+|+||+|+|+
T Consensus 38 ~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y~- 112 (305)
T 2v9p_A 38 AAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELITF- 112 (305)
T ss_dssp TTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHHH-
T ss_pred hcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEcC-
Confidence 34556677777766555 57899999999999999999999999998654432111 1 1112245699999999995
Q ss_pred CCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccccccccc
Q 001041 1055 RPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1178)
Q Consensus 1055 ~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1178)
.++|+|+||+|++|+++|||||||||||||+++|+|+| +|+| +++|+|+|.||++|
T Consensus 113 ---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~t 168 (305)
T 2v9p_A 113 ---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLAS 168 (305)
T ss_dssp ---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGG
T ss_pred ---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCcccccccc
Confidence 36999999999999999999999999999999999999 8999 46899999999999
Q ss_pred HHH-HHhcCCCCCCCHHHHHHHHHHcCchHHHhh-cccccc
Q 001041 1135 IRA-NIAYGKGGDATEAEIQAASEMANAHKFICS-LQQVRT 1173 (1178)
Q Consensus 1135 Ire-NI~~g~~~~asdeei~~Al~~A~~~dfI~~-LP~gld 1173 (1178)
+++ ||.|++ ++++ +++++|+. ||+|+|
T Consensus 169 i~~~ni~~~~--~~~~----------~~~~~i~~~L~~gld 197 (305)
T 2v9p_A 169 LADTRAALVD--DATH----------ACWRYFDTYLRNALD 197 (305)
T ss_dssp GTTCSCEEEE--EECH----------HHHHHHHHTTTGGGG
T ss_pred HHHHhhccCc--cccH----------HHHHHHHHHhHccCC
Confidence 998 999973 4554 35678888 999987
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-20 Score=208.98 Aligned_cols=116 Identities=22% Similarity=0.412 Sum_probs=93.1
Q ss_pred cccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
.+.|+++||+|+| .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999965 2499999999999999999999999999999999999999999999998
Q ss_pred hccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccccc
Q 001041 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRL 1176 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v 1176 (1178)
+|++|||+|.+|++|++|||. +. ...+..+.++++..++.+++..+|++++|.+
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~-~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 153 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENII-GV--SYDEYRYRSVIKACQLEEDISKFAEKDNIVL 153 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHH-TT--CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC
T ss_pred EEEEEeCCCccCcccHHHHhh-Cc--ccchHHHHHHHHHhChHHHHHhccccccchh
Confidence 499999999999999999998 63 2345567778888999999999999988754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-21 Score=205.33 Aligned_cols=120 Identities=22% Similarity=0.398 Sum_probs=102.4
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|+ + +|+||||+|++ |.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 2 59999999999 999999999999999999999999999999999999997643 3578999
Q ss_pred ccccccccccc-cHHHHHhcCCCC-C--CCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKGG-D--ATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~~-~--asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|||++.+|.. |++||+.++... . ..++++.++++..++.++..+.|.
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 125 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA 125 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGG
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChh
Confidence 99999999987 999999987321 0 124668889999998877655544
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-22 Score=236.28 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=155.7
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe---ecCCCC----
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI---NLKEFQ---- 454 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~---~~~~~~---- 454 (1178)
..++++|+++.|+. +..+|+++ |++.+||+++|+||||||||||+++|.|+.+|+.|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45888999999963 34699999 999999999999999999999999999999999999999998 554321
Q ss_pred -HHHHhcceEEEcCC--CCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCcc-chhcCCCCCCChHHHHH
Q 001041 455 -LQWIRKKIGLVSQE--PVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGID-TLVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 455 -~~~~r~~i~~v~Q~--~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~-t~~~~~g~~lSgGqkqr 530 (1178)
...+++.++|++|+ |....-|+.+|+.+.. ++... .+.+ ..+-+...+||+|| ||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~--------------~~~~v~~~ld~l~~lS~g~-qr 265 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD--------------RGQHVLLIMDSLTRYAMAQ-RE 265 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT--------------TTCEEEEEEECHHHHHHHH-HH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh--------------CCCCHHHHHHhHHHHHHHH-HH
Confidence 34577889999995 3344678999988631 11110 0111 01112356799999 99
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-----CC-----eEEEEecCcchhhccCEEEEEeCCEEEE
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV-----NR-----TTVIVAHRLSTVRNADMIAVIHRGKIVE 600 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-----~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~ 600 (1178)
++|| +.+|++ |+++|+.+...+.+.++++.+ ++ |++++||+++ ...||++++|.+|+|+.
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl 335 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVL 335 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEE
Confidence 9999 788888 999999999999999987754 43 8999999999 67799999999999999
Q ss_pred ecChhHHhcC
Q 001041 601 KGTHSKLVED 610 (1178)
Q Consensus 601 ~g~~~~l~~~ 610 (1178)
.|++.++...
T Consensus 336 ~~~~~~~~~~ 345 (438)
T 2dpy_A 336 SRRLAEAGHY 345 (438)
T ss_dssp CHHHHHTTCS
T ss_pred eCCHHHccCC
Confidence 9999887653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-21 Score=216.87 Aligned_cols=127 Identities=19% Similarity=0.350 Sum_probs=107.4
Q ss_pred EEEeeeEEeCCCCCCcc--ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHH
Q 001041 1043 IELHHVSFKYPSRPDVQ--VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWL 1117 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~--vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~---l~~L 1117 (1178)
|+++||+++|. +.+ +|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+.+ ....
T Consensus 4 l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 89999999995 346 999999999999999999999999999999999999999999999999997621 3345
Q ss_pred HHhccccccccccccc-cHHHHHhcCCCC-CCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1118 RQQMGLVSQEPVLFND-TIRANIAYGKGG-DAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~~-~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|++|||++.||.. |++|||.|+... ..+ ++++.++++..++.++..+.|..|
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~L 141 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 7899999999999976 999999987321 122 356888999999988877666543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.5e-21 Score=207.23 Aligned_cols=122 Identities=25% Similarity=0.361 Sum_probs=100.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCCeEEECCcccCCCChHHH-HH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQLKWL-RQ 1119 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~--y~p~~G~I~IDG~dI~~i~l~~L-R~ 1119 (1178)
|+++||+|+|++ .++|+||||+|++||.+||+||||||||||+++|.|+ ++|++|+|.+||.|+.+.+.... |+
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999953 4699999999999999999999999999999999999 89999999999999998887766 44
Q ss_pred hccccccccccccc-cHHHHHhcCCC---C-CCC----HHHHHHHHHHcCc-hHHHhh
Q 001041 1120 QMGLVSQEPVLFND-TIRANIAYGKG---G-DAT----EAEIQAASEMANA-HKFICS 1167 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~g-TIreNI~~g~~---~-~as----deei~~Al~~A~~-~dfI~~ 1167 (1178)
.+++|||+|.+|.+ |++||+.++.. . ... ++++.++++..++ .++..+
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 138 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSR 138 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGS
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence 69999999999976 99999986420 0 111 3457778888887 355443
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-20 Score=215.09 Aligned_cols=125 Identities=20% Similarity=0.385 Sum_probs=105.8
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC------CChH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK------LQLK 1115 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~------i~l~ 1115 (1178)
.|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.|+.+ ++..
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 389999999995 3469999999999999999999999999999999999999999999999999976 5543
Q ss_pred HHHHhcccccccccccc-ccHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhcccc
Q 001041 1116 WLRQQMGLVSQEPVLFN-DTIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQV 1171 (1178)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~-gTIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~g 1171 (1178)
|++|++|||++.||. -|++|||.|+.. ...+ ++++.++++..++.++..+.|..
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 139 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE 139 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGG
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCccc
Confidence 678999999999995 599999998621 0122 34678899999998877665544
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-19 Score=204.04 Aligned_cols=81 Identities=19% Similarity=0.250 Sum_probs=74.9
Q ss_pred CCChHHHHHHHHHHHhc---------cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEE
Q 001041 522 QLSGGQKQRIAIARAIL---------KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV 592 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~---------~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~ 592 (1178)
.||||||||++|||+|. .+|+|||||||||+||+...+.+.+.+.++. .|+|++|| .+. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998763 79999999 444 8999999
Q ss_pred EeCCEEEEecChhHH
Q 001041 593 IHRGKIVEKGTHSKL 607 (1178)
Q Consensus 593 l~~G~i~~~g~~~~l 607 (1178)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999887
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.9e-20 Score=203.50 Aligned_cols=121 Identities=17% Similarity=0.302 Sum_probs=102.7
Q ss_pred EEEeeeEEeCCCC-CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~-~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
|+++||+++|+++ ...++|+|+||+|+ ||++||+||||||||||+++|+|++ |++|+|.+||.|+.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999531 01469999999999 9999999999999999999999999 9999999999999765 34 8899
Q ss_pred c-ccccccccccccHHHHHhcCCC-CCCCHHHHHHHHHHcCch-HHHhhcc
Q 001041 1122 G-LVSQEPVLFNDTIRANIAYGKG-GDATEAEIQAASEMANAH-KFICSLQ 1169 (1178)
Q Consensus 1122 s-iV~Qdp~LF~gTIreNI~~g~~-~~asdeei~~Al~~A~~~-dfI~~LP 1169 (1178)
+ +|||+|.+ +.|++|||.++.. ....++++.++++..++. ++..+-|
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 126 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKL 126 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBG
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCCh
Confidence 9 99999999 9999999987521 134578899999999987 6655444
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-23 Score=236.81 Aligned_cols=205 Identities=15% Similarity=0.039 Sum_probs=143.5
Q ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCCcccCccccE
Q 001041 965 FYAGARLVED-GKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEI 1043 (1178)
Q Consensus 965 ~~~g~~l~~~-g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I 1043 (1178)
.+.|.+.... |.++.+.+..++.++.....+ .+....+.++.+..+.+|+..++ ++................+.+
T Consensus 52 ~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~i 127 (361)
T 2gza_A 52 ERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTRR 127 (361)
T ss_dssp EETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCCC
T ss_pred EECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCCC
Confidence 3456666665 889999999998887765554 23333333333444556777766 322211100000001113445
Q ss_pred ---------EEeeeEEe---CCCCCCcccc---------ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 001041 1044 ---------ELHHVSFK---YPSRPDVQVF---------RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1178)
Q Consensus 1044 ---------~f~nVsf~---Y~~~~~~~vL---------~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I 1102 (1178)
+|+||+|+ |++. +.++| +++||+|++|+.++||||||||||||+++|+|+++|++|.|
T Consensus 128 tl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I 206 (361)
T 2gza_A 128 TLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI 206 (361)
T ss_dssp CHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred CHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence 99999999 9632 23566 99999999999999999999999999999999999999999
Q ss_pred EECCcccCCCChHHHHHhccccc-ccccc---ccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1103 TLDGVEIQKLQLKWLRQQMGLVS-QEPVL---FNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1103 ~IDG~dI~~i~l~~LR~~IsiV~-Qdp~L---F~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|+|. +++.+..+|+++++|+ |++.+ +..|+++||+++.. ..+|..+..+++.+.+++++..+|.|++|.+.
T Consensus 207 ~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~-~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~ 282 (361)
T 2gza_A 207 TIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLR-MKPTRILLAELRGGEAYDFINVAASGHGGSIT 282 (361)
T ss_dssp EEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTT-SCCSEEEESCCCSTHHHHHHHHHHTTCCSCEE
T ss_pred EECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHh-cCCCEEEEcCchHHHHHHHHHHHhcCCCeEEE
Confidence 99985 5677767889999999 99987 89999999998743 44555566667778899999999999998653
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-20 Score=201.70 Aligned_cols=118 Identities=18% Similarity=0.275 Sum_probs=98.8
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc--cCCCCCeEEECCcccCCCChHHH-H
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--YDPDAGHITLDGVEIQKLQLKWL-R 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~--y~p~~G~I~IDG~dI~~i~l~~L-R 1118 (1178)
-|+++||+++|. +.++|+||||+|++||.+||+||||||||||+++|+|+ ++|++|+|.+||.|+.+.+.... |
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 499999999995 34699999999999999999999999999999999999 67999999999999998887766 4
Q ss_pred Hhccccccccccccc-cHHHHHhcCC--------CCCCC----HHHHHHHHHHcCch
Q 001041 1119 QQMGLVSQEPVLFND-TIRANIAYGK--------GGDAT----EAEIQAASEMANAH 1162 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~--------~~~as----deei~~Al~~A~~~ 1162 (1178)
+.|++|||+|.+|.+ |+++|+.++. .+..+ ++++.++++..++.
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 153 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMP 153 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCC
Confidence 569999999999876 8999986531 01122 24577788888874
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.9e-21 Score=209.90 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=94.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCC---H
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDAT---T 489 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~---~ 489 (1178)
.++|+||||||||||+++|+|...|++|+|.++|.++... ..++.++|++|++.++ .-||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~---~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT---VEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC---CSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc---eeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 5899999999999999999999999999999999877432 3356899999999877 4599999998864322 1
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
+.+..... .++.. ... ..||||||||+++|||+.. +++||||+++||+.... .++.+.
T Consensus 81 ~~i~~~~~----~~~~~-------~~~----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~----~l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEK-------FLK----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLE----FMKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHH-------HHH----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHH----HHHHHH
T ss_pred HHHHHHHH----HHHHh-------hhH----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHH----HHHHHH
Confidence 22322222 12211 112 2599999999999999875 99999999999997632 333333
Q ss_pred cCCeEEEEecCcchhh
Q 001041 570 VNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 570 ~~~t~i~itH~~~~~~ 585 (1178)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987763
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-21 Score=219.39 Aligned_cols=175 Identities=14% Similarity=0.214 Sum_probs=125.5
Q ss_pred CcccEEEEeEEEECCCCCCCccccceeEE-----------------------EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 380 IRGDIELRDVYFSYPARPNEQIFSGFSIS-----------------------ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 380 ~~~~i~~~~~~~~y~~~~~~~~l~~i~l~-----------------------i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
..+.|+++||++.|. |+++++++. +++|++++|+||||||||||+++|.|++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 355699999999993 577777765 8999999999999999999999999999
Q ss_pred CCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCC----CC-CCHHHHHHHHHHhcHHHHHHhCCCC
Q 001041 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGK----DD-ATTEEIRVATELANAAKFIDKLPQG 511 (1178)
Q Consensus 437 ~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~----~~-~~~~~~~~~~~~~~~~~~i~~~~~g 511 (1178)
+|..|. .++++|+|++.++..|++||+.+.. +. .+.+.+ .+.++.+..|
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~---------~~~L~~l~~~ 168 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRAL---------MRFVTSVKSG 168 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHH---------HHHHHHHHTT
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHH---------HHHHHHhCCC
Confidence 997664 3799999999999889999997532 11 111222 2333333334
Q ss_pred cc-chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhh--ccC
Q 001041 512 ID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVR--NAD 588 (1178)
Q Consensus 512 ~~-t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~--~~d 588 (1178)
.. ..+ ..|||||+||+++|||++.+|+|+|||||++.+|+... .+.+.+ ..+|+|+|..+... ..+
T Consensus 169 ~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~-----~l~~~~--D~~I~V~a~~~~~~~R~i~ 237 (312)
T 3aez_A 169 SDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL-----MVSDLF--DFSLYVDARIEDIEQWYVS 237 (312)
T ss_dssp CSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC-----CGGGGC--SEEEEEEECHHHHHHHHHH
T ss_pred cccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH-----HHHHhc--CcEEEEECCHHHHHHHHHH
Confidence 32 322 47999999999999999999999999999999986321 122222 23466666665432 244
Q ss_pred EEEEEeCC
Q 001041 589 MIAVIHRG 596 (1178)
Q Consensus 589 ~i~~l~~G 596 (1178)
|.+.+.+|
T Consensus 238 R~~~~rd~ 245 (312)
T 3aez_A 238 RFLAMRTT 245 (312)
T ss_dssp HHHHHTTT
T ss_pred HHHHHHhc
Confidence 54444443
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-19 Score=197.88 Aligned_cols=113 Identities=22% Similarity=0.339 Sum_probs=95.7
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|+. +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|. +|++|+
T Consensus 5 l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred EEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 899999999961 23699999999999999999999999999999999999999999998 367899
Q ss_pred ccccccccc-cccHHHHHhcCCCC---------CCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPVLF-NDTIRANIAYGKGG---------DATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~LF-~gTIreNI~~g~~~---------~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|||+|.+| +.|++|||.++... ...++++.++++..++.++..+.|.
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 127 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT 127 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh
Confidence 999999887 67999999986310 1123568899999999887665443
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-20 Score=209.36 Aligned_cols=174 Identities=17% Similarity=0.230 Sum_probs=123.5
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHH--hcceEEEcCCCC-CC-cc
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LF-TG 474 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~-~~ 474 (1178)
..+||++++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+.... +..+ |..++|++|++. ++ ..
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4578889999999999999999999999999999999999999999886653 2233 457999999997 66 56
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCC
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 552 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~ 552 (1178)
|++||+.++.....+ .. .++. .|...........|| |||++||||+..+|+ +|+|| ||++
T Consensus 171 ~v~e~l~~~~~~~~d---------~~---lldt--~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 171 VLSKAVKRGKEEGYD---------VV---LCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHTTCS---------EE---EECC--CCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHcCCc---------ch---HHhc--CCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 899999864210000 00 0111 122111111122478 999999999999999 99999 9999
Q ss_pred CCHHhHHHHHHHHHHHhcCCeEEEEec---------Ccchhh-ccCEEEEEeCCEE
Q 001041 553 LDAESEKVVQEALDRIMVNRTTVIVAH---------RLSTVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 553 lD~~~~~~i~~~i~~~~~~~t~i~itH---------~~~~~~-~~d~i~~l~~G~i 598 (1178)
+|+.... +.+.+ ..+.|+|++|| .++... ..+.|..+..|+.
T Consensus 233 lD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 233 LNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9998542 12222 13789999999 233333 3678999998864
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-20 Score=200.89 Aligned_cols=168 Identities=16% Similarity=0.133 Sum_probs=106.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1178)
.++++| .++++||+++|+||||||||||+++|.|+++ .|.+++.....-.....+..++|++|++.+|. .|++
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999985 34554322111111123567999999997764 4666
Q ss_pred HHHhcCC---C-----CCCHHHHHHH----------HHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 478 DNIAYGK---D-----DATTEEIRVA----------TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 478 ~ni~~~~---~-----~~~~~~~~~~----------~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
+|+.... . ....++..+. ++..++.+.....| ..|| |++.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----------~~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----------EAVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----------TSEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----------CcEE-----------EEEE
Confidence 6663210 0 0112222222 12223322222222 2344 8999
Q ss_pred CCCEEEEeCCCCCC----CHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEe
Q 001041 540 DPRILLLDEATSAL----DAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIH 594 (1178)
Q Consensus 540 ~~~illlDe~ts~l----D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~ 594 (1178)
+|++++|||||+++ |+...+.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 6667888888887764 37899999999998865 99999984
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-20 Score=192.99 Aligned_cols=111 Identities=20% Similarity=0.212 Sum_probs=87.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC---CCcEEECCeecCCCC---HHHHh-cceE----EEcCCCCCCcccHHHHHh
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQ---AGEVLIDGINLKEFQ---LQWIR-KKIG----LVSQEPVLFTGSIKDNIA 481 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~---~G~i~i~g~~~~~~~---~~~~r-~~i~----~v~Q~~~l~~~ti~~ni~ 481 (1178)
++++|||+||||||||+++|+|+++|. .|.|.+||.++.+++ .+.+| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 66777 4788 899999887 111
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001041 482 YGKDDATTEEIRVATELANAAKFIDK-LPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1178)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~il 544 (1178)
+ +++ . .+++++++.. +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~~~-~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----SEE-E-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----CHH-H-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----Chh-h-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 121 1 6788999999 99 999999995 9999999999999999998873
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-19 Score=205.83 Aligned_cols=173 Identities=17% Similarity=0.223 Sum_probs=124.3
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHH--hcceEEEcCCCC-CC-ccc
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPV-LF-TGS 475 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~-~~t 475 (1178)
.+||++++|++++|||||||||||+++.|.|++.|.+|+|.++|.|+.... +..+ |..|+|++|++. ++ ..|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 578889999999999999999999999999999999999999999886542 2222 457999999987 55 578
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCCC
Q 001041 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSAL 553 (1178)
Q Consensus 476 i~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~l 553 (1178)
+++|+.++.....+ .. .++. .|...........|| |||++||||+..+|+ +|+|| ||+++
T Consensus 229 v~e~l~~~~~~~~d---------~~---lldt--~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 229 LSKAVKRGKEEGYD---------VV---LCDT--SGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHTTCS---------EE---EEEC--CCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred HHHHHHHHHhCCCH---------HH---HHHh--cCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 99999864210000 00 0111 122111111122478 999999999999999 99999 99999
Q ss_pred CHHhHHHHHHHHHHHhcCCeEEEEecC---------cchhh-ccCEEEEEeCCEE
Q 001041 554 DAESEKVVQEALDRIMVNRTTVIVAHR---------LSTVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 554 D~~~~~~i~~~i~~~~~~~t~i~itH~---------~~~~~-~~d~i~~l~~G~i 598 (1178)
|+..... .+.+ ..+.|+|++||- ++... ..+.|..+..|+.
T Consensus 291 D~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 291 NMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9986431 2222 137899999992 33333 3678999988863
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.72 E-value=7e-20 Score=190.41 Aligned_cols=159 Identities=17% Similarity=0.238 Sum_probs=118.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHH
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEE 491 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~ 491 (1178)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++. .++++++|++|+. .++ ++|+.-.....+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~~~--- 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLEPP--- 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCCCC---
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhcccccCC---
Confidence 78999999999999999999999998 899 999998886544 4678999999986 332 223221000000
Q ss_pred HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH-HHHH---HhccCCCEEEEeC--CCCCCCHHhHHHHHHHH
Q 001041 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI-AIAR---AILKDPRILLLDE--ATSALDAESEKVVQEAL 565 (1178)
Q Consensus 492 ~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri-~lAR---al~~~~~illlDe--~ts~lD~~~~~~i~~~i 565 (1178)
+...+..+|+.+..+|||||+++ +|+| |+..+|+++|||| |+...|....+.+.+.+
T Consensus 70 -----------------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l 132 (189)
T 2i3b_A 70 -----------------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTL 132 (189)
T ss_dssp -----------------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHH
T ss_pred -----------------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHH
Confidence 01123478888899999999998 5566 6899999999999 88888887766666665
Q ss_pred HHHhcCCeEEE--Ee--cCcchhhccCEEEEEeCCEEEEec
Q 001041 566 DRIMVNRTTVI--VA--HRLSTVRNADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 566 ~~~~~~~t~i~--it--H~~~~~~~~d~i~~l~~G~i~~~g 602 (1178)
.. .+++|+ ++ |+.+ ...+|+|..+++|+|++..
T Consensus 133 ~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 133 ST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred hC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 43 345554 34 9876 5567888888999998753
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-19 Score=202.10 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=146.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC-------CCH
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE-------FQL 455 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~-------~~~ 455 (1178)
.++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|.|+.+|+.|.|.+.|.+..+ ...
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4778899999963 34699999 9999999999999999999999999999999999999998865221 122
Q ss_pred HHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccch-hcCCCCCCChHHHHHHHHH
Q 001041 456 QWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL-VGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 456 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~-~~~~g~~lSgGqkqri~lA 534 (1178)
..+++.+.+++|.+. ...+++..+...+.+.+.... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 234455677766421 112344444444444444332 232211 113456799999 899999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc---CC-----eEEEEecCcchhhccCEEEEEeCCEEEEecChhH
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDRIMV---NR-----TTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~---~~-----t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
+.+|++ |+++|+.....+.+.+++..+ |. |++++||+++ -.-||++++|.+|+|+..|+.++
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 578877 999999999999999887652 56 8999999998 55699999999999999998887
Q ss_pred Hhc
Q 001041 607 LVE 609 (1178)
Q Consensus 607 l~~ 609 (1178)
+..
T Consensus 253 ~~~ 255 (347)
T 2obl_A 253 ENH 255 (347)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-18 Score=191.01 Aligned_cols=132 Identities=17% Similarity=0.182 Sum_probs=100.8
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
++|+++| +++|++++|+||||||||||+++|+|+++|. +|+|.++|.++ .|++|++.-+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i------------~~~~~~~~~~------ 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI------------EYVFKHKKSI------ 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC------------CSCCCCSSSE------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc------------eeecCCccee------
Confidence 4899999 8999999999999999999999999999997 99999998654 3444433110
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1178)
.. . -+-|++ ..+| |++|||||..+|++++||||| |+++.
T Consensus 75 ---v~-q----------------------~~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 75 ---VN-Q----------------------REVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp ---EE-E----------------------EEBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred ---ee-H----------------------HHhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 00 0 011221 1222 899999999999999999999 98875
Q ss_pred HHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 559 ~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
..+ ++....+.|+++++|+.+....+|++++|..
T Consensus 114 ~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp HHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred HHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhcC
Confidence 543 3333468999999999987777999888753
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=200.07 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=71.5
Q ss_pred CCC-ChHHHHHHHHHHHhccCC--CEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCE
Q 001041 521 TQL-SGGQKQRIAIARAILKDP--RILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGK 597 (1178)
Q Consensus 521 ~~l-SgGqkqri~lARal~~~~--~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~ 597 (1178)
..| |||||||++||||++.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999988877899999999999988899999996653
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-17 Score=184.91 Aligned_cols=76 Identities=28% Similarity=0.387 Sum_probs=67.7
Q ss_pred CCCCCChHHHH------HHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEEE
Q 001041 519 HGTQLSGGQKQ------RIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMIA 591 (1178)
Q Consensus 519 ~g~~lSgGqkq------ri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i~ 591 (1178)
....||||||| |+++|||+..+|++|||||||++||+.....+.+.++++. +++|+|+|||+.+....||+|+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 34679999999 6788899999999999999999999999999999998764 4679999999988777899999
Q ss_pred EEe
Q 001041 592 VIH 594 (1178)
Q Consensus 592 ~l~ 594 (1178)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-20 Score=215.23 Aligned_cols=175 Identities=15% Similarity=0.187 Sum_probs=142.0
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCcEEECCeecCCCCHHHHhcceEEEcC-----CCCCCc
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWIRKKIGLVSQ-----EPVLFT 473 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 473 (1178)
++|++++ +++|++++|+||||||||||+++|+|+++|. +|+|.+.|.++. + .++..++||+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3566665 7899999999999999999999999999997 899977665543 2 35678999999 888999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHhcH-----------------HHHH------------HhCCCCccchhc
Q 001041 474 GSIKDNIAYGKDDA-------TTEEIRVATELANA-----------------AKFI------------DKLPQGIDTLVG 517 (1178)
Q Consensus 474 ~ti~~ni~~~~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~~~~g~~t~~~ 517 (1178)
+++++|+.. .|+. +.+.++.+++.++. +..+ ..+++++++.++
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999996 4654 66767666665431 1111 124668899999
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCE--EEEeCCCCCCCHH----h-----HHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 518 EHGTQLSGGQKQRIAIARAILKDPRI--LLLDEATSALDAE----S-----EKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lARal~~~~~i--lllDe~ts~lD~~----~-----~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
+++..+||| ||+++||+++.+|+| +|+||+|+++|.. + +...+++++...+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999899999 899999999999999 9999999999965 2 23577888888889999999999874
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-17 Score=185.68 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=119.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-cEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
++|+++++.+++|++++|+||+|||||||++.|+|.+.|.+| .|.+.+.+ .+...++.++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999998877 77654432 3455666666555554322 2223
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH-HHHHHHHHHhccCCCEEEEeCCCC---C--
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ-KQRIAIARAILKDPRILLLDEATS---A-- 552 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq-kqri~lARal~~~~~illlDe~ts---~-- 552 (1178)
++..+. .++++..+.. .+.+...+ + .+.+...++|.+| +||+. |+++..+|+++|+||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~-----~~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWF-----DELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHH-----HHHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHH-----HHHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 333211 1111221111 11222221 1 1333335689999 77777 999999999999999999 4
Q ss_pred -CCH-HhHHHHHHHHHHHhc--CCeEEEEecCc--c--------------------hhh-ccCEEEEEeCCEE
Q 001041 553 -LDA-ESEKVVQEALDRIMV--NRTTVIVAHRL--S--------------------TVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 553 -lD~-~~~~~i~~~i~~~~~--~~t~i~itH~~--~--------------------~~~-~~d~i~~l~~G~i 598 (1178)
+|. .....+.+.++++.+ ++|+|+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 444 444567777776643 78999999995 4 454 5999999998874
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-18 Score=211.83 Aligned_cols=169 Identities=14% Similarity=0.134 Sum_probs=117.8
Q ss_pred CCccccceeE-EEeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcc
Q 001041 398 NEQIFSGFSI-SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG 474 (1178)
Q Consensus 398 ~~~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~--l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ 474 (1178)
+.++|+++++ .+++|++++|+||||||||||++. +.|+++|.+|.|+++|.+. .......+++++|++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3579999999 999999999999999999999999 6799998999999999872 223344567899999987521
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC--
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA-- 552 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~-- 552 (1178)
+|+.+...... ++.+++++..++.+..... ...|||| +|++++|||||+.
T Consensus 101 ---~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~-----------~~~LS~g-------------~~~~lilDe~t~~~~ 152 (525)
T 1tf7_A 101 ---GKLFILDASPD-PEGQEVVGGFDLSALIERI-----------NYAIQKY-------------RARRVSIDSVTSVFQ 152 (525)
T ss_dssp ---TSEEEEECCCC-SSCCSCCSSHHHHHHHHHH-----------HHHHHHH-------------TCSEEEEECSTTTST
T ss_pred ---CcEEEEecCcc-cchhhhhcccCHHHHHHHH-----------HHHHHHc-------------CCCEEEECCHHHHHH
Confidence 12211100000 0000111111222211111 1234555 4779999999985
Q ss_pred ---CCHHhHHHHHHHHHHHh-cCCeEEEEecCcchh---------hc-cCEEEEEeCCE
Q 001041 553 ---LDAESEKVVQEALDRIM-VNRTTVIVAHRLSTV---------RN-ADMIAVIHRGK 597 (1178)
Q Consensus 553 ---lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~---------~~-~d~i~~l~~G~ 597 (1178)
+|+...+.+.+.++.+. .++|+|++||+++.+ .. ||+|++|++|+
T Consensus 153 ~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~ 211 (525)
T 1tf7_A 153 QYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVL 211 (525)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEEC
T ss_pred hcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEc
Confidence 58888888888887664 489999999999874 44 99999999855
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-17 Score=212.07 Aligned_cols=172 Identities=15% Similarity=0.153 Sum_probs=121.7
Q ss_pred ccEEEEe-----EEEECCCCCCCccccceeEEEeC-------CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee
Q 001041 382 GDIELRD-----VYFSYPARPNEQIFSGFSISISS-------GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1178)
Q Consensus 382 ~~i~~~~-----~~~~y~~~~~~~~l~~i~l~i~~-------g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1178)
+.|+++| +++.|+. +.++++|++|.+++ |++++|+||||||||||++.+ |++.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999842 35799999999987 999999999999999999999 98753
Q ss_pred cCCCCHHHHhcceE-EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 450 LKEFQLQWIRKKIG-LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 450 ~~~~~~~~~r~~i~-~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
..++| ||||++. ..|+.|||.. . .++.+.+. .+-.++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-r--------------ig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-R--------------LGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-E--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-H--------------cCCHHHHh-----------hchhhhHHHHH
Confidence 23666 9999973 5567777642 1 11112111 11235677777
Q ss_pred HHHHHHHHhccCCCEEEEeCCCCCCCHHhH-HHHHHHHHHHh-c-CCeEEEEecCcchhhc-cCEEEEEeCCEEE--Eec
Q 001041 529 QRIAIARAILKDPRILLLDEATSALDAESE-KVVQEALDRIM-V-NRTTVIVAHRLSTVRN-ADMIAVIHRGKIV--EKG 602 (1178)
Q Consensus 529 qri~lARal~~~~~illlDe~ts~lD~~~~-~~i~~~i~~~~-~-~~t~i~itH~~~~~~~-~d~i~~l~~G~i~--~~g 602 (1178)
+ +++||++..+|+++|||||++++|+... ..+.+.++.+. + ++|+|++||.++.+.. +|++.++ +|++. +.|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 9999999999999999999999999874 55667776664 3 7899999999998865 8998887 58887 555
Q ss_pred ChhH
Q 001041 603 THSK 606 (1178)
Q Consensus 603 ~~~~ 606 (1178)
++++
T Consensus 936 ~~~~ 939 (1022)
T 2o8b_B 936 ECED 939 (1022)
T ss_dssp ----
T ss_pred Cccc
Confidence 5443
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=194.45 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=116.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHh-cCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGK 484 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~-~~~ 484 (1178)
+..+++|++++|+|++|||||||++.++|...+. |. +-+.+++|++ ..+++.|.. ++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~---~~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEES---RAQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSC---HHHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCC---HHHHHHHHHHcC-
Confidence 3489999999999999999999999999998774 53 1256777876 235666653 22
Q ss_pred CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH-----hHH
Q 001041 485 DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE-----SEK 559 (1178)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~-----~~~ 559 (1178)
.+.++ .. . .|+..........|||||+||+++||++..+|+++|+| ||++||.. ..+
T Consensus 333 --~~~~~------------~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 333 --MDFEE------------ME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp --CCHHH------------HH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred --CCHHH------------HH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 12111 11 1 14444445556789999999999999999999999999 99999998 777
Q ss_pred HHHHHHHHHh-cCCeEEEEecCc----------chhhc-cCEEEEEeCCE
Q 001041 560 VVQEALDRIM-VNRTTVIVAHRL----------STVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 560 ~i~~~i~~~~-~~~t~i~itH~~----------~~~~~-~d~i~~l~~G~ 597 (1178)
.+.+.++.+. .+.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 7777776654 478999999998 66654 89999999887
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.1e-16 Score=154.68 Aligned_cols=81 Identities=26% Similarity=0.366 Sum_probs=71.2
Q ss_pred CCCCCCChHHHHHHHHH------HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhccCEE
Q 001041 518 EHGTQLSGGQKQRIAIA------RAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRNADMI 590 (1178)
Q Consensus 518 ~~g~~lSgGqkqri~lA------Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~~d~i 590 (1178)
....+||||||||++|| ||++.+|+++||||||++||+.+.+.+.+.+.++. +++|+|+|||+......||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 45678999999999876 99999999999999999999999999999998864 478999999999766779999
Q ss_pred EEE--eCCEE
Q 001041 591 AVI--HRGKI 598 (1178)
Q Consensus 591 ~~l--~~G~i 598 (1178)
++| ++|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45643
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.4e-18 Score=183.41 Aligned_cols=166 Identities=13% Similarity=0.149 Sum_probs=104.9
Q ss_pred CCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHH
Q 001041 398 NEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1178)
Q Consensus 398 ~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1178)
+.++|+|+||++++|++++|+||+|||||||+++|.|++ |.+.++ ..+..++|++|++....-|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999976 666554 356789999999744456899
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCC
Q 001041 478 DNIAYGKDD--------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549 (1178)
Q Consensus 478 ~ni~~~~~~--------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ 549 (1178)
+|+.+.... .+.+++.+ .++.+.++.+..+ ..||+||+||+++ +++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~L~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHR---------TLKNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHH---------HHHHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHH---------HHHHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 987653221 11122222 2222222333333 4799999999988 688899999999998
Q ss_pred CCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh-hc-cCEEEEEeCCEEEEecChhHHh
Q 001041 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV-RN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 550 ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~-~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
....|.. +.+. .+.|++++||....+ +. ++++ ++|+ +++++.
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8777754 2222 378999999974333 33 3333 5664 555554
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-19 Score=190.08 Aligned_cols=158 Identities=18% Similarity=0.311 Sum_probs=120.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccH
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 476 (1178)
++|++++|+||||||||||+++|+|+++ |..|+ ++|+++...+.+.+++.+ +|+++++.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 5899999999999999999999999986 77887 589999888999888876 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH-HhccCCCEEEEeCCCCCCCH
Q 001041 477 KDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR-AILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 477 ~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR-al~~~~~illlDe~ts~lD~ 555 (1178)
++|+ +|. +.++++++++..... .....|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~-~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRIC-VLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEE-EEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcE-EEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 664 467777776542110 001234466655321 12 567 88999999999999999999
Q ss_pred HhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 556 ESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
++++.|++.+....++ +.++| +. ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999988776544 34567 33 77999998874
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=3e-18 Score=198.72 Aligned_cols=177 Identities=16% Similarity=0.171 Sum_probs=122.0
Q ss_pred cccceeEEEeC--CCEEEEEcCCCCcHHHHHHHHhccCCCCC----CcEEE----CCeecCCCCHHHHhcceEEEcCCCC
Q 001041 401 IFSGFSISISS--GTTAALVGQSGSGKSTVISLIERFYDPQA----GEVLI----DGINLKEFQLQWIRKKIGLVSQEPV 470 (1178)
Q Consensus 401 ~l~~i~l~i~~--g~~~~ivG~~GsGKStl~~~l~g~~~~~~----G~i~i----~g~~~~~~~~~~~r~~i~~v~Q~~~ 470 (1178)
+.+.+++++++ |++++|+|+||||||||+++|.|+++|.+ |+|.+ +|.++ .++..++ .+|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45679999999 99999999999999999999999999999 99987 35555 4455555 46999999999
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc-cCCCEEEEeC-
Q 001041 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-KDPRILLLDE- 548 (1178)
Q Consensus 471 l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~-~~~~illlDe- 548 (1178)
+|.+|+++||.++.....+.... .+|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~----------------------------~~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAF----------------------------CIQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHH----------------------------HHHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHH----------------------------HHHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 89999999999865421111111 12345566666676664 4778877787
Q ss_pred --CC------CCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhc
Q 001041 549 --AT------SALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 549 --~t------s~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|+ +++|+.....+.+.++++.+ +.++++++|.-..-+.+|++.++++ +++.|+.+||.+
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhc
Confidence 54 46777777777777766544 6777777765333334565555543 445666666643
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=191.43 Aligned_cols=167 Identities=14% Similarity=0.118 Sum_probs=119.0
Q ss_pred ccEEEEeEEEECCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHH--------hccCCCCCCcEEECCeecC
Q 001041 382 GDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLI--------ERFYDPQAGEVLIDGINLK 451 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l--------~g~~~~~~G~i~i~g~~~~ 451 (1178)
+.|.+++..+.+-.. .++.+++|++|++++|++++|+|||||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888876554221 235799999999999999999999999999999999 45444433211
Q ss_pred CCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 452 EFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 452 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
++++. .+|. .+| +.+.+ ..++|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 11110 0110 001 00111 134788888888
Q ss_pred HHHHHh--ccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhH
Q 001041 532 AIARAI--LKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSK 606 (1178)
Q Consensus 532 ~lARal--~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 606 (1178)
.+|+++ ..+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 899999999999999999877666 44455543 3789999999988888899999999999998888776
Q ss_pred H
Q 001041 607 L 607 (1178)
Q Consensus 607 l 607 (1178)
+
T Consensus 811 l 811 (934)
T 3thx_A 811 L 811 (934)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-16 Score=183.62 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=67.0
Q ss_pred CCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhccCEEEEEe
Q 001041 522 QLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVIH 594 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l~ 594 (1178)
.||||||||++||+++. .+|+++||||||++||+.....+.+.+.+..+ +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 68999999999999999999999999988753 679999999988888899999986
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.61 E-value=7.9e-17 Score=184.48 Aligned_cols=166 Identities=17% Similarity=0.202 Sum_probs=114.8
Q ss_pred ccccce-eEEEeCCCEEEEEcCCCCcHHHHHHHHhccC--CCCC----Cc-EEECCeecCCCCHHHHhcceEEEcCCCCC
Q 001041 400 QIFSGF-SISISSGTTAALVGQSGSGKSTVISLIERFY--DPQA----GE-VLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1178)
Q Consensus 400 ~~l~~i-~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~--~~~~----G~-i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 471 (1178)
+.|+.+ ++.+++|++++|+||+|||||||++.+++.+ +|+. |. |++++.+.- .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 356654 6899999999999999999999999999998 5555 67 899986641 24578999999988
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc-------cCCCEE
Q 001041 472 FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL-------KDPRIL 544 (1178)
Q Consensus 472 ~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~-------~~~~il 544 (1178)
+..++.+||.+.... . |++|+|++.++++++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888999999875432 1 234556666666665 689999
Q ss_pred EEeCCCCCCCHHh-------H-----HHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHH
Q 001041 545 LLDEATSALDAES-------E-----KVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKL 607 (1178)
Q Consensus 545 llDe~ts~lD~~~-------~-----~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l 607 (1178)
|+||||+.+|++. + +.+.+.+..+. .++|+|+++|....... ++...+...|++.+.+.+..|
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 9999999999863 1 23333444443 37899999998765432 344566778888877765544
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-16 Score=198.10 Aligned_cols=157 Identities=19% Similarity=0.215 Sum_probs=116.5
Q ss_pred cccEEEEeEEEECCCC--CCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCcEEECCeecCCCCHHH
Q 001041 381 RGDIELRDVYFSYPAR--PNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~--~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~g~~~~~~~~~~ 457 (1178)
.+.|.+++. ++|-- .+.++++|+||+ |++++|+||||||||||++++.|+.. ++.|.+. . .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v-p----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV-P----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB-S----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee-e----------h
Confidence 346888887 34421 235799999999 99999999999999999999999864 6778752 1 0
Q ss_pred HhcceEEEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 458 IRKKIGLVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
.+.++++++| +|. -++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1456888887 443 466666542 258899999999999
Q ss_pred h--ccCCCEEEEeCC---CCCCCHHhH-HHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEE
Q 001041 537 I--LKDPRILLLDEA---TSALDAESE-KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIV 599 (1178)
Q Consensus 537 l--~~~~~illlDe~---ts~lD~~~~-~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~ 599 (1178)
+ +.+|+++||||| |+++|..+. ..+.+.+.+ .++|+|++||+.+....+ .-.+.++++.
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~ 714 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVA 714 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEE
Confidence 9 999999999999 999999875 467777766 589999999998876555 2223445544
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-16 Score=169.82 Aligned_cols=152 Identities=17% Similarity=0.264 Sum_probs=99.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-------CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP-------QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-------~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
-+++|++++|+||||||||||++.|+|.+.+ ..|.+++++.+. .. +.++++++|+..++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996655 344777777542 11 2357788888877777999998
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHHh-
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES- 557 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal--~~~~~illlDe~ts~lD~~~- 557 (1178)
.+.......+.. ...+ .+.+.+. +++ ..+|++++||||++.+|++.
T Consensus 95 ~~~~~~~~~~~~-~~~~--~~~~~~~----------------------------~~~~~~~~~~llilDe~~~~l~~~~~ 143 (231)
T 4a74_A 95 YVARAFNSNHQM-LLVQ--QAEDKIK----------------------------ELLNTDRPVKLLIVDSLTSHFRSEYI 143 (231)
T ss_dssp EEEECCSHHHHH-HHHH--HHHHHHH----------------------------HHTTSSSCEEEEEEETSSHHHHHHSC
T ss_pred EEEecCChHHHH-HHHH--HHHHHHH----------------------------HhcccCCceeEEEECChHHHhccccC
Confidence 875442222111 1111 0111111 111 35899999999999999842
Q ss_pred ------H-----HHHHHHHHHHh--cCCeEEEEec----Ccchhhc-cCEEEEEeCC
Q 001041 558 ------E-----KVVQEALDRIM--VNRTTVIVAH----RLSTVRN-ADMIAVIHRG 596 (1178)
Q Consensus 558 ------~-----~~i~~~i~~~~--~~~t~i~itH----~~~~~~~-~d~i~~l~~G 596 (1178)
+ +.+.+.+.++. .++|+|++|| ....+.. ||++++|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 1 14445554443 3799999999 4444655 8999999875
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-18 Score=181.06 Aligned_cols=140 Identities=12% Similarity=0.123 Sum_probs=105.4
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc---ccHHHHHhcCC-
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT---GSIKDNIAYGK- 484 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~ti~~ni~~~~- 484 (1178)
.++|++++|+||+|||||||+++|.|++.| +++|++|++.++. -|+++|+.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998864 5999999998874 36777765532
Q ss_pred -CC-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH----HHHHHHHHHhccCCCEEEEeCCCCC------
Q 001041 485 -DD-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ----KQRIAIARAILKDPRILLLDEATSA------ 552 (1178)
Q Consensus 485 -~~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq----kqri~lARal~~~~~illlDe~ts~------ 552 (1178)
+. .+.+++.+.++..++. ..+...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRG-----------LPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTT-----------CCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcC-----------CCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 21 2334455544333221 12223456688885 5799999999999999999999999
Q ss_pred -CCHHhHHHHHHHHHHHh--cCCeEEEEecCc
Q 001041 553 -LDAESEKVVQEALDRIM--VNRTTVIVAHRL 581 (1178)
Q Consensus 553 -lD~~~~~~i~~~i~~~~--~~~t~i~itH~~ 581 (1178)
||+..+..+.+.+.+.. +++|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999988888887643 578999999974
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-17 Score=200.49 Aligned_cols=190 Identities=18% Similarity=0.274 Sum_probs=120.1
Q ss_pred cEEEEeEEEECCCCCCCccccce----------eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEEECCeecC
Q 001041 383 DIELRDVYFSYPARPNEQIFSGF----------SISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLK 451 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i----------~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~ 451 (1178)
.++++|+++.|+.. ..++|+.+ +++++. ++||||+|||||||+++|.|++.| .+|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999632 23445443 366654 999999999999999999999988 7999999999863
Q ss_pred CC---CHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHH
Q 001041 452 EF---QLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQ 527 (1178)
Q Consensus 452 ~~---~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGq 527 (1178)
.. ....+|.+++|++|++.++ ..||++||.++. +.+.. .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------------~~~~~-----------~~~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------------NAIAG-----------EGMGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------------HHHHC-----------SSSCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------------HHhcC-----------Cccccc---
Confidence 21 2345688999999999877 468999986420 00100 111122
Q ss_pred HHHHHHHHHhccCCCEEEEeCC------CCCCCHHhHHHHHHHHHHHhc---CCeEEEEecCcchh--------hc----
Q 001041 528 KQRIAIARAILKDPRILLLDEA------TSALDAESEKVVQEALDRIMV---NRTTVIVAHRLSTV--------RN---- 586 (1178)
Q Consensus 528 kqri~lARal~~~~~illlDe~------ts~lD~~~~~~i~~~i~~~~~---~~t~i~itH~~~~~--------~~---- 586 (1178)
++++.++.+...+|+++++||| |++||+...+.+.+.++++.+ +-++++++|+++.. ..
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2445555666678999999999 999999999999999988643 34667789987632 11
Q ss_pred -cCEEEEEeCCEEEEecChhHHh
Q 001041 587 -ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 587 -~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
...|.|+.++.+++.|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3568889888888888765543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.7e-16 Score=176.24 Aligned_cols=147 Identities=21% Similarity=0.238 Sum_probs=105.5
Q ss_pred EeEEEECCCCCCCccccceeE-------EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCC-CCcEEECCeecCCCCHHHH
Q 001041 387 RDVYFSYPARPNEQIFSGFSI-------SISSGTTAALVGQSGSGKSTVISLIERFYDPQ-AGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l-------~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~-~G~i~i~g~~~~~~~~~~~ 458 (1178)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|. +|.|...+ |..++. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e-d~~e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIE-DPIEFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEcc-CcHHhh---h
Confidence 4677777543 3567778776 77899999999999999999999999999987 56664433 222221 1
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
+...++++|.+.-.. ..+..+ +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~~----------------------------------------~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFSE----------------------------------------ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHHH----------------------------------------HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHHH----------------------------------------HHHHHhh
Confidence 233455665442110 011110 9999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRG 596 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G 596 (1178)
.+|+++++|||+ |.++...+.++ ...|+|+++++|..+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77776555444 33589999999999999889999888543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-15 Score=169.61 Aligned_cols=151 Identities=23% Similarity=0.203 Sum_probs=102.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHHH--hcceEEEcCCCCCCc-ccHHHHHhcC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQWI--RKKIGLVSQEPVLFT-GSIKDNIAYG 483 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~l~~-~ti~~ni~~~ 483 (1178)
+|++++|+||||||||||++.|.|++.|++|+|.++|.|+.... +..+ |..++|++|++.++. .++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 2222 457999999997764 5788888642
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 001041 484 KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1178)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1178)
. . +.+ +..+-..++..+. ....++..++||+++|||+..+|+.++| .||+.+...+.+
T Consensus 181 ~-------~----~~~--d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~ 238 (304)
T 1rj9_A 181 K-------A----RGY--DLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLE 238 (304)
T ss_dssp H-------H----HTC--SEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHH
T ss_pred H-------h----CCC--CEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHH
Confidence 1 0 000 0000011111110 0112466779999999999999994444 445544444444
Q ss_pred HHHHHh--cCCeEEEEecCcch
Q 001041 564 ALDRIM--VNRTTVIVAHRLST 583 (1178)
Q Consensus 564 ~i~~~~--~~~t~i~itH~~~~ 583 (1178)
.++... .+.|+|++||.-..
T Consensus 239 ~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 239 QAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHcCCcEEEEECCccc
Confidence 444432 37899999997543
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-17 Score=186.89 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=112.8
Q ss_pred EEEeEEEE---CCCCCCCccc---------cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCC
Q 001041 385 ELRDVYFS---YPARPNEQIF---------SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKE 452 (1178)
Q Consensus 385 ~~~~~~~~---y~~~~~~~~l---------~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~ 452 (1178)
+|+|++|+ |+.. ++++| +++||.+++|+.++|+||||||||||+++|+|+++|.+|.|.++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 78899998 8532 23455 9999999999999999999999999999999999999999999975 45
Q ss_pred CCHHHHhcceEEEc-CCCCC---CcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHH
Q 001041 453 FQLQWIRKKIGLVS-QEPVL---FTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQK 528 (1178)
Q Consensus 453 ~~~~~~r~~i~~v~-Q~~~l---~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqk 528 (1178)
+.....+..++|++ |++.+ +..|+++||..+.....+..+...++..++.++++.+|.|.+|.+++-+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 55555678899999 98876 788999999986543333222222233445678888999999989888777788899
Q ss_pred HHHHHHHH
Q 001041 529 QRIAIARA 536 (1178)
Q Consensus 529 qri~lARa 536 (1178)
+|+.....
T Consensus 294 ~Rl~~l~~ 301 (361)
T 2gza_A 294 ERLALMVL 301 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99987753
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=147.78 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=70.6
Q ss_pred CCCCChHHHHHHHHHHHhc----cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEE--
Q 001041 520 GTQLSGGQKQRIAIARAIL----KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI-- 593 (1178)
Q Consensus 520 g~~lSgGqkqri~lARal~----~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l-- 593 (1178)
...||||||||++|||++. ++|+++||||||++||+.+.+.+.+.|++..++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 5679999999999999999999999999888888999999999988899999865
Q ss_pred eCCEE
Q 001041 594 HRGKI 598 (1178)
Q Consensus 594 ~~G~i 598 (1178)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 46643
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-16 Score=179.38 Aligned_cols=166 Identities=16% Similarity=0.178 Sum_probs=99.2
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|.++|++++|+. ..++++++|+| +|+|+||||||||++.|+|...+..|. +|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~---~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY---PGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC---CSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC---CCcccCCcc-ceeeee
Confidence 45899999999963 46999999997 999999999999999999998765551 332221111 111356
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccC
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKD 540 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~ 540 (1178)
+++++|++.++ ..||.||+.++... ..++.+.. +.+.+.. .++.+++||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 67999999876532 11111111 1122211 2345667899999999999
Q ss_pred CC---EEEEeCCC-CCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 541 PR---ILLLDEAT-SALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 541 ~~---illlDe~t-s~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
|+ ++++|||| ++||+..... ++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999876433 23334578899999987654
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.4e-16 Score=174.81 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=78.3
Q ss_pred EeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc-CCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 387 RDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERF-YDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 387 ~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~-~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
+|+++.|+. +.++++++|+| +|+|++|+|||||++.|+|. ..|.+| |.++|.++.. +. . +..++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 477888853 46999999988 99999999999999999997 888999 8888877643 11 1 3568999
Q ss_pred cCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEE
Q 001041 466 SQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRIL 544 (1178)
Q Consensus 466 ~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~il 544 (1178)
+|++.++ .-|+.|+..++......++.....+. +.+. .+..+ .++|||||||+++|||+. ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~-------~~~~~----~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQ-------FERYL----HDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHH-------HHHHH----HHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHH-------HHHHH----HHhCHHhhhhhhhhhhhh----ee
Confidence 9987654 56888887765321111111111110 1111 11222 358999999999999985 99
Q ss_pred EEeCCCCC-CCHHhHHHHHHHHHHHhc--CCeEEEEecCcc
Q 001041 545 LLDEATSA-LDAESEKVVQEALDRIMV--NRTTVIVAHRLS 582 (1178)
Q Consensus 545 llDe~ts~-lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~ 582 (1178)
++||||++ ||+... +.++.+.+ +.++|+.+|++.
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 99999985 999863 33444333 346666678764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-16 Score=165.56 Aligned_cols=169 Identities=14% Similarity=0.217 Sum_probs=99.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC-----CCCCCcEEE-------CCeec-
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY-----DPQAGEVLI-------DGINL- 450 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~-----~~~~G~i~i-------~g~~~- 450 (1178)
|+++|++|.|+ .+++++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.. ++..+
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78899999995 257888 889999999999999999999999999988 788887654 22222
Q ss_pred --CCCC--------HHHHhcceEEEcCCCCCCcc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccc-hhcC
Q 001041 451 --KEFQ--------LQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT-LVGE 518 (1178)
Q Consensus 451 --~~~~--------~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t-~~~~ 518 (1178)
.... ...+++.++++.|++..+.+ .+..++..+ .+..+ .+. .+++... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~---~~~~~-~~~------~~~~~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHP---LKDLD-QQM------IEWAVDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSC---CCHHH-HHH------HHHHHHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCC---CchhH-HHH------HHHHHHc--CCCeEEEEe
Confidence 1111 12234444455543322221 222222221 12211 111 1112111 2222 2355
Q ss_pred CCCCCChHHHHH-HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc
Q 001041 519 HGTQLSGGQKQR-IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV 570 (1178)
Q Consensus 519 ~g~~lSgGqkqr-i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~ 570 (1178)
+...+|+||||| +..+|+++.+|+++++||||||+|......+.+.|.+..+
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 666799999999 8999999999999999999999999999888888877653
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-16 Score=177.23 Aligned_cols=129 Identities=12% Similarity=0.073 Sum_probs=94.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCC---C
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDD---A 487 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~---~ 487 (1178)
++.+++|+|++|||||||++.|.+++.+. |. . ++.+.+|+||+++++.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~--------------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG--------------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG--------------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC--------------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 57799999999999999999999998763 20 0 3456677999999999999999765321 0
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccch------hcCCCCCCChHHHHHHHHH--HHhccCCCEEEEeCCCCCCCHHh
Q 001041 488 TTEEIRVATELANAAKFIDKLPQGIDTL------VGEHGTQLSGGQKQRIAIA--RAILKDPRILLLDEATSALDAES 557 (1178)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~~~~g~~t~------~~~~g~~lSgGqkqri~lA--Ral~~~~~illlDe~ts~lD~~~ 557 (1178)
.....-.+.+...+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+++++|++.
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011122334567888899997653 5566789999999999998 666 999999999999999875
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-14 Score=155.96 Aligned_cols=166 Identities=15% Similarity=0.048 Sum_probs=110.5
Q ss_pred CccccceeE-EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc---ceEEEcCCCCCCcc
Q 001041 399 EQIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK---KIGLVSQEPVLFTG 474 (1178)
Q Consensus 399 ~~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~---~i~~v~Q~~~l~~~ 474 (1178)
.+.|+++.. .+++|++++|+||+|||||||++.|++.+.+.+|.|.+.+.+. +...++. .+++.+|+..-
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 457888887 8999999999999999999999999998888788887755332 2222222 23333332110
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC--EEEEeCCCCC
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR--ILLLDEATSA 552 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~--illlDe~ts~ 552 (1178)
+++.+-.. ... .. + ...+. ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 83 ---~~~~~~~~-~~~--------------~~-----~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LMK--------------EK-----E-DQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC------------------------CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-ccc--------------cc-----C-ceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01111000 000 00 0 00011 1348999988888877778999 9999999988
Q ss_pred C--CHHhHHHHHHHHHHHh--cCCeEEEEecCc--------chhh-ccCEEEEEeCCE
Q 001041 553 L--DAESEKVVQEALDRIM--VNRTTVIVAHRL--------STVR-NADMIAVIHRGK 597 (1178)
Q Consensus 553 l--D~~~~~~i~~~i~~~~--~~~t~i~itH~~--------~~~~-~~d~i~~l~~G~ 597 (1178)
+ |+...+.+.+.++++. .++|+|+++|.. ..+. .||+|++|+..+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9988778888887664 378999999998 3455 499999998643
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=182.04 Aligned_cols=168 Identities=15% Similarity=0.152 Sum_probs=107.3
Q ss_pred ccEEEEeEEEECC----CCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH
Q 001041 382 GDIELRDVYFSYP----ARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 382 ~~i~~~~~~~~y~----~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
+.+.+++...-.= ...++.+++|++|++++|++++|+||||||||||++.+.+..-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 3577777644320 112467999999999999999999999999999999987532110
Q ss_pred HhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
..-.++|++..-+ .+.+++. .. .++.+ .+..+-.++|+|++|+..++|+
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i~-~~--------------ig~~d-----------~l~~~~stfs~em~~~~~il~~- 749 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGIF-TR--------------MGAAD-----------NIYKGRSTFMEELTDTAEIIRK- 749 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEEE-EE--------------C---------------------CCHHHHHHHHHHHHHH-
T ss_pred --hcCccccchhhhh--hHHHHHH-Hh--------------CChHH-----------HHHHhHHHhhHHHHHHHHHHHh-
Confidence 0011223221000 0000010 00 01111 1122235789999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHH-HHHHHHh--cCCeEEEEecCcchhhccCEEEE-EeCCEE
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQ-EALDRIM--VNRTTVIVAHRLSTVRNADMIAV-IHRGKI 598 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~-~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~-l~~G~i 598 (1178)
..+|+++||||||+++|+.....+. ..++.+. .++|+|++||..+....+|+.-- +.++++
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 7899999999999999999877765 5555543 47999999999988776765421 344444
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-15 Score=151.57 Aligned_cols=87 Identities=16% Similarity=0.147 Sum_probs=67.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCC---CCeEEECCcccCCCC---hHHHH-Hhcc----ccccccccccccHHHHHh
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEIQKLQ---LKWLR-QQMG----LVSQEPVLFNDTIRANIA 1140 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~---~G~I~IDG~dI~~i~---l~~LR-~~Is----iV~Qdp~LF~gTIreNI~ 1140 (1178)
+++||||+||||||||+++|.|+|+|+ .|.|++||.|+.+++ .+++| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999999887 88999 5899 899999998 222
Q ss_pred cCCCCCCCHHHHHHHHHHcCchHHHhh-cccccccccc
Q 001041 1141 YGKGGDATEAEIQAASEMANAHKFICS-LQQVRTSRLL 1177 (1178)
Q Consensus 1141 ~g~~~~asdeei~~Al~~A~~~dfI~~-LP~gldT~v~ 1177 (1178)
+ ++++ .|+++++|.+ || ||||.|+
T Consensus 77 -~------~~~~-----~a~l~~~i~~~l~-g~dt~i~ 101 (171)
T 2f1r_A 77 -V------SEEE-----GNDLDWIYERYLS-DYDLVIT 101 (171)
T ss_dssp -C------CHHH-----HTCHHHHHHHHTT-TCSEEEE
T ss_pred -C------Chhh-----hhCHHHHHHhhCC-CCCEEEE
Confidence 1 1222 7899999999 99 9999874
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-14 Score=178.56 Aligned_cols=168 Identities=13% Similarity=0.133 Sum_probs=109.9
Q ss_pred ccEEEEeEEEECCC--CCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEEECCeecCCCCHHHH
Q 001041 382 GDIELRDVYFSYPA--RPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~--~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~i~g~~~~~~~~~~~ 458 (1178)
+.|.+++...-.-. ..+..+++|++|+ ++|++++|+||||||||||+++|.|...+ ..|.. +.. -
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~------vpa-----~ 643 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSY------VPA-----Q 643 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCC------BSS-----S
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCcc------cch-----h
Confidence 34777765422100 0235799999999 99999999999999999999999997432 23321 110 1
Q ss_pred hcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 459 RKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+.++++++| +| .-++.||+..+ ..++|+|+++ ++.+...
T Consensus 644 ~~~i~~~~~---i~~~~~~~d~l~~~------------------------------------~stf~~e~~~-~~~il~~ 683 (800)
T 1wb9_A 644 KVEIGPIDR---IFTRVGAADDLASG------------------------------------RSTFMVEMTE-TANILHN 683 (800)
T ss_dssp EEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHHHH
T ss_pred cccceeHHH---HHhhCCHHHHHHhh------------------------------------hhhhhHHHHH-HHHHHHh
Confidence 235666665 33 23455554321 1235677665 4444445
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHH-HHHHHHHh--cCCeEEEEecCcchhhccCEEEEEeCCEEEEe
Q 001041 538 LKDPRILLLDEATSALDAESEKVV-QEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEK 601 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i-~~~i~~~~--~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~ 601 (1178)
..+|+++|||||++++|+.....+ .+.++.+. .++|+|++||+.+....||++..+++|++...
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 789999999999999998765543 55555554 37899999999988878888877888887643
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=8.7e-15 Score=155.89 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=100.3
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcc-cH----HHH
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SI----KDN 479 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti----~~n 479 (1178)
-+.++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+.+. ..+..++|++|++..|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 68899888866543 235679999999877754 34 355
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHH
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~ 559 (1178)
+.+....+ |-.+++ ++.++..++++||| ||+.+.+
T Consensus 87 ~~~~~~~y-------------------------------------g~~~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 87 AEVFGNYY-------------------------------------GTSREA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp EEETTEEE-------------------------------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred HHHHhccC-------------------------------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 44321100 000111 22333446999999 9999999
Q ss_pred HHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhc
Q 001041 560 VVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 560 ~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
.+.+.+. ++.|+++++|+++.+.. |+ +.+| .++++++..
T Consensus 122 ~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 122 QIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9988765 57899999999998865 32 5666 567776643
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=149.99 Aligned_cols=151 Identities=18% Similarity=0.230 Sum_probs=97.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHh-cCCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA-YGKDD 486 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~-~~~~~ 486 (1178)
.+++|++++|+||+|||||||++.+++.+. .|.+. .|.+... +..+.|++.+... ..+..++. ++. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 378999999999999999999999998664 46663 3443211 2467887766432 22322221 121 1
Q ss_pred CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--CCCHHhH---HHH
Q 001041 487 ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS--ALDAESE---KVV 561 (1178)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts--~lD~~~~---~~i 561 (1178)
....+....++. + ++....+.....||+||+|++ |+++.+|+++++||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~---------l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADG---------L--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHH---------E--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCc---------e--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 222222222221 1 233334556778999998875 68888999999999999 9998654 566
Q ss_pred HHHHHHHh--cCCeEEEEecCcchh
Q 001041 562 QEALDRIM--VNRTTVIVAHRLSTV 584 (1178)
Q Consensus 562 ~~~i~~~~--~~~t~i~itH~~~~~ 584 (1178)
.+.++.+. .++|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 67776664 389999999987654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.4e-14 Score=167.07 Aligned_cols=177 Identities=14% Similarity=0.124 Sum_probs=110.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+++|+|+. ++|.++........+..
T Consensus 17 l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~ 83 (427)
T 2qag_B 17 VPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQS 83 (427)
T ss_dssp CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEE
T ss_pred EEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEee
Confidence 55566 778853 35 9999999999999 9999999999999999999983 34444433333334568
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHH----HHHhcHHHHHHhC-------CCCccch-------hcCCCCC
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVA----TELANAAKFIDKL-------PQGIDTL-------VGEHGTQ 522 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~----~~~~~~~~~i~~~-------~~g~~t~-------~~~~g~~ 522 (1178)
++|++|++.++ ..|+.||+.||.. .+.+..+.. .+ ....+.+... +...++. +-+.+..
T Consensus 84 i~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 84 NTYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 99999999877 6799999998764 232221111 11 1122222222 1112222 2344456
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEe
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVA 578 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~it 578 (1178)
|+-.+ +.++++|..+++|+++|+|+..|.+.....+.+.|++.+ .+..++.++
T Consensus 162 l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is 216 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFP 216 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC
T ss_pred CCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecC
Confidence 77666 789999999999999999999998876667777777533 345666665
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-15 Score=171.82 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhh-chhhHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-cccCccccEE---------
Q 001041 976 KATFSDVFKVFFSLTMTAIGISQSSS-FSSDSNKAKSAAASIFAIIDRESKIDPSDESGT-ILEDVKGEIE--------- 1044 (1178)
Q Consensus 976 ~~t~g~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~-~~~~~~g~I~--------- 1044 (1178)
.++.+.+..++.++.....+ .+.. ....++....+.+|+..+++.|... ...... ...+..+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~--~~~~~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN--DETISISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS--TTCCEEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC--CCCceEEEeCCCCCCCCHHHHHhCCC
Confidence 57888888887776655443 2222 2233333334456777666533211 110000 0011234567
Q ss_pred EeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccc
Q 001041 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124 (1178)
Q Consensus 1045 f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV 1124 (1178)
|+||+| | .++++++||+|++|+.++|+||||||||||+++|.|+++|++|.|+|+|.+ ++.+..+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 889999 8 259999999999999999999999999999999999999999999999986 44455567888888
Q ss_pred ccccccccccHHHHHhc----CCC----CCCCHHHHHHHHHH
Q 001041 1125 SQEPVLFNDTIRANIAY----GKG----GDATEAEIQAASEM 1158 (1178)
Q Consensus 1125 ~Qdp~LF~gTIreNI~~----g~~----~~asdeei~~Al~~ 1158 (1178)
+|. .-+.|.+|+. .+. ++.+..|++++++.
T Consensus 223 ~gg----g~~~r~~la~aL~~~p~ilildE~~~~e~~~~l~~ 260 (330)
T 2pt7_A 223 FGG----NITSADCLKSCLRMRPDRIILGELRSSEAYDFYNV 260 (330)
T ss_dssp CBT----TBCHHHHHHHHTTSCCSEEEECCCCSTHHHHHHHH
T ss_pred eCC----ChhHHHHHHHHhhhCCCEEEEcCCChHHHHHHHHH
Confidence 761 1266666642 211 13444566665544
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.2e-14 Score=150.50 Aligned_cols=93 Identities=18% Similarity=0.218 Sum_probs=63.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-HHHHHhcccccccccccc-----
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL-KWLRQQMGLVSQEPVLFN----- 1132 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l-~~LR~~IsiV~Qdp~LF~----- 1132 (1178)
..|+||||+|++|+.+|||||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.+++++|++.+|.
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 988865532 345788999999986653
Q ss_pred ------ccHHHHHhcCCCCCCCHHHHHHHHHHcC
Q 001041 1133 ------DTIRANIAYGKGGDATEAEIQAASEMAN 1160 (1178)
Q Consensus 1133 ------gTIreNI~~g~~~~asdeei~~Al~~A~ 1160 (1178)
+++++| .||. +++++.++++...
T Consensus 87 ~~~l~~~~~~~~-~~g~----~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT----LKSEYDKAKEQNK 115 (218)
T ss_dssp TCEEEEEEETTE-EEEE----EHHHHHHHHHTTC
T ss_pred cchhhhhhcccc-cCCC----cHHHHHHHHhCCC
Confidence 455566 4542 3456777666543
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.8e-15 Score=148.49 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=75.1
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccc
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1178)
+-+|++++|. +..+++++||+|++|+.+||+||+|||||||+++|.|+. |++|+|.++|.++.+. ...+ .+
T Consensus 9 ~~~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~ 79 (158)
T 1htw_A 9 PDEFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GK 79 (158)
T ss_dssp CSHHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TE
T ss_pred CCHHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cc
Confidence 3346677774 346999999999999999999999999999999999999 9999999999998532 1112 27
Q ss_pred cccccccccccHHHHHh-cC
Q 001041 1124 VSQEPVLFNDTIRANIA-YG 1142 (1178)
Q Consensus 1124 V~Qdp~LF~gTIreNI~-~g 1142 (1178)
|+|++.+|.-|+.||+. +|
T Consensus 80 ~~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 80 MIYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEEEECTTCSCTTHHHHST
T ss_pred ceeccccccCCcHHHHHHcC
Confidence 99999999889999995 45
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=140.15 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=95.2
Q ss_pred ccccceeE-EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 400 QIFSGFSI-SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 400 ~~l~~i~l-~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
+.|+++.. .+++|++++|+||+|||||||++.+++ .+. + .+.|+..+..+-...+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~-~-------------------~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSG-K-------------------KVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHC-S-------------------EEEEEESSCCCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcC-C-------------------cEEEEECCCCCCHHHHHH
Confidence 45666554 689999999999999999999999999 222 2 233444333221222222
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChH--HHHHHHHHHHhccC-CCEEEEeCCCCCCCH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGG--QKQRIAIARAILKD-PRILLLDEATSALDA 555 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgG--qkqri~lARal~~~-~~illlDe~ts~lD~ 555 (1178)
.... ...+.++ ....+ .+. .++++ |+|+++.+|+++++ |+++++|||++.+|+
T Consensus 65 ~~~~--~~~~~~~------------~~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 65 MAET--RGLNPEE------------ALSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHT--TTCCHHH------------HHHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHh--cCCChHH------------HhhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 2211 0111111 11111 111 23444 47889999999986 999999999999997
Q ss_pred HhH-----H---HHHHHHHHHhc--CCeEEEEecCcc-------------hhh-ccCEEEEEeCC
Q 001041 556 ESE-----K---VVQEALDRIMV--NRTTVIVAHRLS-------------TVR-NADMIAVIHRG 596 (1178)
Q Consensus 556 ~~~-----~---~i~~~i~~~~~--~~t~i~itH~~~-------------~~~-~~d~i~~l~~G 596 (1178)
... + .+.+.++++.+ ++|+|+++|... .+. .||.|++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 532 2 34444555543 789999999765 333 59999999754
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-14 Score=149.54 Aligned_cols=96 Identities=22% Similarity=0.318 Sum_probs=77.6
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHHhcccccccccccccc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1178)
+++|++++||||||||||||+++|.|+|+ |..|. +||+|+..++.+.+|+.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 46899999999999999999999999997 78897 699999999999999886 7999999999
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccc
Q 001041 1135 IRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTS 1174 (1178)
Q Consensus 1135 IreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT 1174 (1178)
+++|+ || .++++++++++.+.+.-+ +-.|+|+++
T Consensus 76 ~~~n~-~g----~~~~~i~~~~~~~~~~~~-~~~~~g~~~ 109 (198)
T 1lvg_A 76 FSGNL-YG----TSKEAVRAVQAMNRICVL-DVDLQGVRS 109 (198)
T ss_dssp ETTEE-EE----EEHHHHHHHHHTTCEEEE-ECCHHHHHH
T ss_pred ecCcc-CC----CCHHHHHHHHHcCCcEEE-ECCHHHHHH
Confidence 99998 76 378899999986533222 224566654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-15 Score=171.22 Aligned_cols=153 Identities=20% Similarity=0.163 Sum_probs=107.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC--------CCCCCcEEECCeecCCCC---------------HHHHhcceEEE---c
Q 001041 413 TTAALVGQSGSGKSTVISLIERFY--------DPQAGEVLIDGINLKEFQ---------------LQWIRKKIGLV---S 466 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~--------~~~~G~i~i~g~~~~~~~---------------~~~~r~~i~~v---~ 466 (1178)
++++|+|++|||||||++.|+|.. .|+.|+|.+||.++...+ ..+++..++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999999987653 34567789988 7
Q ss_pred CCCC-CCcccHHHHHhcCCCCCCHHHHHHHH-HHhcHHHHHHhCCCCccchhcC-----CCCCCChHHHHHHHHHHHhcc
Q 001041 467 QEPV-LFTGSIKDNIAYGKDDATTEEIRVAT-ELANAAKFIDKLPQGIDTLVGE-----HGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 467 Q~~~-l~~~ti~~ni~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~g~~t~~~~-----~g~~lSgGqkqri~lARal~~ 539 (1178)
|++. .+..++.||..++.| ..+...+ ......+. ..+ ++.-+.++- .-.++|+||+||...+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p----~~~~~~~~~~~~~~~~-~~l-~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADP----GPIIQTFFSHEVLCQR-YLL-DGVIALVDAVHADEQMNQFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCH----HHHHHHHHHSHHHHHH-EEE-EEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCH----HHHHHHHhcCccccCe-EEE-CCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEE
Confidence 8876 468899999987654 2221111 00000000 000 011111111 011589999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcc
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLS 582 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~ 582 (1178)
+|+++ ||| +.+.+.++++.++.|+++++|+..
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 99877 888 566777777667889999999743
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-15 Score=160.26 Aligned_cols=138 Identities=14% Similarity=0.176 Sum_probs=96.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcC-CCCC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDA 487 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~-~~~~ 487 (1178)
.++|++++|+||||||||||+++|.|+++|. | ..+++|+|+...++.+.++|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4689999999999999999999999999876 5 158889999888888887776311 0000
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCC--ccchhcCCCCCCChHHHHHHHHH-HHhccCCCEEEEeCCCCCCCHHhHHHHHHH
Q 001041 488 TTEEIRVATELANAAKFIDKLPQG--IDTLVGEHGTQLSGGQKQRIAIA-RAILKDPRILLLDEATSALDAESEKVVQEA 564 (1178)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~~~~g--~~t~~~~~g~~lSgGqkqri~lA-Ral~~~~~illlDe~ts~lD~~~~~~i~~~ 564 (1178)
..+.+...+.+.+..++.| +++.+.+++..+|+||+||+++| |+++.++.++++|||... .
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~-----------~ 143 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWR-----------D 143 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGG-----------G
T ss_pred -----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhH-----------H
Confidence 0011111223334444444 66778899999999999999998 888888888888887420 0
Q ss_pred HHHHhcCCeEEEEecCcch
Q 001041 565 LDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 565 i~~~~~~~t~i~itH~~~~ 583 (1178)
+...+ ..++.+.+..+.
T Consensus 144 l~~~~--d~~i~vd~~~~~ 160 (208)
T 3c8u_A 144 LTAIW--DVSIRLEVPMAD 160 (208)
T ss_dssp GGGTC--SEEEEECCCHHH
T ss_pred HHHhc--CEEEEEeCCHHH
Confidence 11111 356777777665
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-14 Score=151.77 Aligned_cols=136 Identities=15% Similarity=0.082 Sum_probs=86.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDA 487 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~ 487 (1178)
.+++|++++|+||+|||||||+++|.|. +..|.|.++|.++..... .+..++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 678999999866532110 1234678888664 4567888876421
Q ss_pred CHHHHHHHHHHhcHHHHHHhCC--CCccchh--cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 001041 488 TTEEIRVATELANAAKFIDKLP--QGIDTLV--GEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1178)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~~~--~g~~t~~--~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1178)
.. ... .+....++.+. .+++... +.....+|+||+||+++||++.++|+++ +|++..+.+.+
T Consensus 77 ---~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 000 00000000000 0111111 3334579999999999999999999876 57765555554
Q ss_pred HH
Q 001041 564 AL 565 (1178)
Q Consensus 564 ~i 565 (1178)
.+
T Consensus 143 ~~ 144 (191)
T 1zp6_A 143 QF 144 (191)
T ss_dssp HT
T ss_pred HH
Confidence 44
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-14 Score=163.31 Aligned_cols=113 Identities=24% Similarity=0.269 Sum_probs=97.0
Q ss_pred ccccceEEeeC--CCEEEEEcCCCCCHHHHHHHHhcccCCCC----CeEEE----CCcccCCCChHHHHHhccccccccc
Q 001041 1060 VFRDLNLKIRA--GKTVALVGESGSGKSTVVSLLQRFYDPDA----GHITL----DGVEIQKLQLKWLRQQMGLVSQEPV 1129 (1178)
Q Consensus 1060 vL~~isf~I~~--Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~----G~I~I----DG~dI~~i~l~~LR~~IsiV~Qdp~ 1129 (1178)
+.+.|+++|++ |+++||||+||||||||+++|.|+|+|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99997 47777 6777777 66999999999
Q ss_pred cccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1130 LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1130 LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
+|++|+++||.++.. +..+..++......+...++..++.+++..
T Consensus 235 ~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 279 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDT-DFITTQAFCIQYEGKAHPFLDSMIKEYPFD 279 (365)
T ss_dssp HHHHHHCSSEEEESS-CHHHHHHHHHHHHSCCCHHHHHHHHHSCCS
T ss_pred HHHHhccCCEEEEeC-CchHHHHHHHHHcCCCCHHHHHHHhhcCCC
Confidence 999999999998743 456777777777778889999988764443
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-13 Score=149.92 Aligned_cols=102 Identities=22% Similarity=0.306 Sum_probs=84.4
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHHHHhc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~-~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
++++|++|. ++|+|+| +++|+.++|+|||||||||++++|+|+++|+ +|+|.++|.|+..+. ++.+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 466777752 3999999 9999999999999999999999999999998 999999999987653 4557
Q ss_pred ccccc-----ccccccccHHHHHhcCCCCCC-------CHHHHHHHHHHc
Q 001041 1122 GLVSQ-----EPVLFNDTIRANIAYGKGGDA-------TEAEIQAASEMA 1159 (1178)
Q Consensus 1122 siV~Q-----dp~LF~gTIreNI~~g~~~~a-------sdeei~~Al~~A 1159 (1178)
++|+| ++..|..+|+.+|+.++ +. +.+.++++++.+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~~p--~illlDEp~D~~~~~~~l~~~ 120 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALREDP--DVIFVGEMRDLETVETALRAA 120 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHHCC--SEEEESCCCSHHHHHHHHHHH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhhCC--CEEEeCCCCCHHHHHHHHHHH
Confidence 88899 77788999999999863 33 666666666654
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=9.6e-14 Score=155.93 Aligned_cols=81 Identities=21% Similarity=0.268 Sum_probs=72.4
Q ss_pred ccccEEEeeeEEeCCCCCCccccccceEE-----------------------eeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLK-----------------------IRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~~isf~-----------------------I~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.++.|+++||++.|. |+++++++. +++|+.+||+|+||||||||+++|.+++
T Consensus 40 ~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp TTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 456799999999993 478888875 8999999999999999999999999999
Q ss_pred CCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhc
Q 001041 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141 (1178)
Q Consensus 1096 ~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~ 1141 (1178)
+|..|. +++++|+||+++|..|+++|+.+
T Consensus 115 ~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~ 143 (312)
T 3aez_A 115 ARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNL 143 (312)
T ss_dssp HTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTC
T ss_pred cccCCC-----------------CeEEEEecCccCCcccHHHHHHH
Confidence 998664 56899999999999999999975
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-13 Score=159.84 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=84.8
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc---ccCCCC----
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV---EIQKLQ---- 1113 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~---dI~~i~---- 1113 (1178)
+.++++||++.|.. +..||+++ |+|++||++||+|+||||||||+++|.|+++|++|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45899999999963 34699999 999999999999999999999999999999999999999999 665542
Q ss_pred -hHHHHHhccccccc--cccccccHHHHHhc
Q 001041 1114 -LKWLRQQMGLVSQE--PVLFNDTIRANIAY 1141 (1178)
Q Consensus 1114 -l~~LR~~IsiV~Qd--p~LF~gTIreNI~~ 1141 (1178)
...+++.+++|+|+ |.+..-|+.+|+.+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~ 237 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATR 237 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 45688999999994 45567799999865
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.2e-12 Score=139.20 Aligned_cols=146 Identities=19% Similarity=0.287 Sum_probs=87.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCC-----CCCcEEECCeecCC-CCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIER--FYDP-----QAGEVLIDGINLKE-FQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~-----~~G~i~i~g~~~~~-~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
-+++|++++|+||+|||||||++.|++ ..+| ..|.+++++.+.-. -....+.+++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 4554 56778888754211 1122233455555543 4555
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCHH-
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDAE- 556 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~lD~~- 556 (1178)
+.+..+ .+.++....+ .-+++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~-~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARA-FNTDHQTQLL-----------------------------------YQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEEC-CSHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEec-CCHHHHHHHH-----------------------------------HHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 544322 2222222111 1111111 589999999999999985
Q ss_pred ------hHH-----HHHHHHHHHh--cCCeEEEEecCcchh-------------------h-ccCEEEEEeCC
Q 001041 557 ------SEK-----VVQEALDRIM--VNRTTVIVAHRLSTV-------------------R-NADMIAVIHRG 596 (1178)
Q Consensus 557 ------~~~-----~i~~~i~~~~--~~~t~i~itH~~~~~-------------------~-~~d~i~~l~~G 596 (1178)
.++ .+.+.+..+. .++|+|+++|..... . .||.+++|+.|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 322 2333344333 378999999965432 2 48999999865
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-13 Score=152.82 Aligned_cols=95 Identities=22% Similarity=0.314 Sum_probs=81.7
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHHHHhcccccc-----cccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWLRQQMGLVSQ-----EPVLFN 1132 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~-~G~I~IDG~dI~~i~l~~LR~~IsiV~Q-----dp~LF~ 1132 (1178)
++|++++ +++|+.++|||||||||||++++|+|+++|+ +|+|.++|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3678776 8999999999999999999999999999998 899988877764 3 36788999999 999999
Q ss_pred ccHHHHHhcCCCCCC-------CHHHHHHHHHHcCc
Q 001041 1133 DTIRANIAYGKGGDA-------TEAEIQAASEMANA 1161 (1178)
Q Consensus 1133 gTIreNI~~g~~~~a-------sdeei~~Al~~A~~ 1161 (1178)
++|++||++++ +. +++.++.|++.++.
T Consensus 200 ~~l~~~L~~~p--d~illdE~~d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 200 DALRAALREDP--DVIFVGEMRDLETVETALRAAET 233 (372)
T ss_dssp HHHHHHTTSCC--SEEEESCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHhhhCc--CEEEECCCCCHHHHHHHHHHHhc
Confidence 99999999863 44 67778888887754
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-13 Score=163.62 Aligned_cols=83 Identities=14% Similarity=0.132 Sum_probs=74.3
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-e-EEECCcccCCCChHHHH
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-H-ITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~-I~IDG~dI~~i~l~~LR 1118 (1178)
+-|+++||+|+|+ ++||+|++|++++|+||||||||||+++|++++.|++| + |++|| | .|
T Consensus 117 ~mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~ 178 (460)
T 2npi_A 117 TMKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQ 178 (460)
T ss_dssp THHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TT
T ss_pred chhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------cc
Confidence 4588999999883 79999999999999999999999999999999999999 9 99999 2 37
Q ss_pred Hhcccccccccccc----ccHHHHHhcC
Q 001041 1119 QQMGLVSQEPVLFN----DTIRANIAYG 1142 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~----gTIreNI~~g 1142 (1178)
+.+++|||++.+|. .|++||+ ++
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~ 205 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WG 205 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CS
T ss_pred CCeeeeccchhhcccccccchhhhh-cc
Confidence 88999999997664 4899999 76
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6e-12 Score=146.75 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=102.4
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC----HHH--HhcceEEEcCCCCCC-cc
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ----LQW--IRKKIGLVSQEPVLF-TG 474 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~----~~~--~r~~i~~v~Q~~~l~-~~ 474 (1178)
-+++||++++|++++|+|+||||||||++.|.|++.+.+|+|.++|.|+.... +.. .|.+|+|++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 35789999999999999999999999999999999999999999887765431 122 467899999998765 57
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCC-----CCCChHHHHHHHHHHHhcc-CC-CEEEE
Q 001041 475 SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHG-----TQLSGGQKQRIAIARAILK-DP-RILLL 546 (1178)
Q Consensus 475 ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g-----~~lSgGqkqri~lARal~~-~~-~illl 546 (1178)
|+++|+.++... |.|..+ ..-| .++-.--+|++.++|++.. .| .++|.
T Consensus 363 tV~e~l~~a~~~------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLv 418 (503)
T 2yhs_A 363 VIFDAIQAAKAR------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLT 418 (503)
T ss_dssp HHHHHHHHHHHT------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEE
T ss_pred HHHHHHHHHHhc------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEE
Confidence 899999864210 111111 1111 0111223578889998754 45 46666
Q ss_pred eCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEec
Q 001041 547 DEATSALDAESEKVVQEALDRIMVNRTTVIVAH 579 (1178)
Q Consensus 547 De~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH 579 (1178)
.||+++.|+... .+.+.+. .+.|.+++||
T Consensus 419 LDattGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 419 IDASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp EEGGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred ecCcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 668877554421 1112221 3679999999
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.19 E-value=7.7e-13 Score=132.95 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=70.3
Q ss_pred eEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcC
Q 001041 388 DVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ 467 (1178)
Q Consensus 388 ~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q 467 (1178)
|++++|+ +..+++++||++++|++++|+||+|||||||+++|+|++ |.+|+|.++|.++.+. ...+ .+++|
T Consensus 12 ~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q 82 (158)
T 1htw_A 12 FSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIY 82 (158)
T ss_dssp HHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEE
T ss_pred HHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Cccee
Confidence 4455563 246899999999999999999999999999999999999 9999999999877421 1111 27999
Q ss_pred CCCCCcccHHHHHhc
Q 001041 468 EPVLFTGSIKDNIAY 482 (1178)
Q Consensus 468 ~~~l~~~ti~~ni~~ 482 (1178)
++.++.-|+.||+.+
T Consensus 83 ~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 83 HFDLYRLADPEELEF 97 (158)
T ss_dssp EEECTTCSCTTHHHH
T ss_pred ccccccCCcHHHHHH
Confidence 998888899999853
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.3e-13 Score=152.72 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=115.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH----HHHhc
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWIRK 460 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~r~ 460 (1178)
+++|+++.|. ...+|++++|++++|++++|+|++|||||||+++|.|++.|.+|+|.+.|.|+..... ...|.
T Consensus 31 e~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 3445555663 2358999999999999999999999999999999999999999999999988754321 23467
Q ss_pred ceEEEcCCCCCCc----------cc---HHHHHh-c---CCC---------CCCHHHHHHHHHH-------------hcH
Q 001041 461 KIGLVSQEPVLFT----------GS---IKDNIA-Y---GKD---------DATTEEIRVATEL-------------ANA 501 (1178)
Q Consensus 461 ~i~~v~Q~~~l~~----------~t---i~~ni~-~---~~~---------~~~~~~~~~~~~~-------------~~~ 501 (1178)
++++++|+|.+|. || ++|.+. + +.+ ..++..+.+.++. ..+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 8999999998874 22 333321 0 000 0011111100000 000
Q ss_pred HHHHHhCCCCcc-chhcC-CCCCCChHHHHHHHHHHHhcc------CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 502 AKFIDKLPQGID-TLVGE-HGTQLSGGQKQRIAIARAILK------DPRILLLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 502 ~~~i~~~~~g~~-t~~~~-~g~~lSgGqkqri~lARal~~------~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
.+.+...|+-+- +.+.. ....+|+|++|++..|++++. +|+++. +||+|.+....+.+.|.+..
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 000111121000 11110 113478999999999999987 688876 99999999888888887653
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.7e-11 Score=139.24 Aligned_cols=74 Identities=27% Similarity=0.420 Sum_probs=67.0
Q ss_pred CCCChHHHHHH------HHHHHhccC-CCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEE
Q 001041 521 TQLSGGQKQRI------AIARAILKD-PRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 521 ~~lSgGqkqri------~lARal~~~-~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
..||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.+.++.+++++|++||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 668999999 99999999999999999999999998865567999999999866679999999
Q ss_pred e
Q 001041 594 H 594 (1178)
Q Consensus 594 ~ 594 (1178)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.9e-12 Score=139.63 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=69.3
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--HHhccccccccc-cc-c
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LF-N 1132 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~-LF-~ 1132 (1178)
++++||++++|+.++||||+||||||+++.|++++.|++|+|.++|.|+.... +..+ |.+|++|+|++. ++ .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 46789999999999999999999999999999999999999999999987653 3344 457999999997 65 5
Q ss_pred ccHHHHHhcC
Q 001041 1133 DTIRANIAYG 1142 (1178)
Q Consensus 1133 gTIreNI~~g 1142 (1178)
.|++||+.++
T Consensus 170 ~~v~e~l~~~ 179 (302)
T 3b9q_A 170 TVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6999999754
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.8e-14 Score=162.81 Aligned_cols=128 Identities=16% Similarity=0.157 Sum_probs=86.2
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC----CHHHHhcceEEEc---------C
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF----QLQWIRKKIGLVS---------Q 467 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~----~~~~~r~~i~~v~---------Q 467 (1178)
+|+++ + .++|++++|+||||||||||+++|+|+++|.+|+|.+.|.++... +...++.++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 45555 3 378999999999999999999999999999999999988776321 1112344555544 9
Q ss_pred CCCCC--c-----ccHHHHHhcCCC--------C-CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 468 EPVLF--T-----GSIKDNIAYGKD--------D-ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 468 ~~~l~--~-----~ti~~ni~~~~~--------~-~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
+|-++ . .|+++|+.++.. . .+..+....+... |++... ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l-----------gl~~~~--~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM-----------GIEPFL--ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH-----------TCCHHH--HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc-----------CCcHHH--HHHHHHHHHHHH-
Confidence 99652 2 488998875321 0 1112221122221 222211 235799999999
Q ss_pred HHHHHhccCCCEEE
Q 001041 532 AIARAILKDPRILL 545 (1178)
Q Consensus 532 ~lARal~~~~~ill 545 (1178)
|||+++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999876
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.8e-15 Score=155.88 Aligned_cols=162 Identities=14% Similarity=0.060 Sum_probs=102.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHH
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTE 490 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~ 490 (1178)
|++++|+||+|||||||++.|.+ +.+|.+.++|.++... ..+++++|.+... ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 5678999988544221 2456777755322 346777765310
Q ss_pred HHHHHHHHhcHHHHHHhCCCCccchhcC--------CCCCC--ChHHHHHHHHHH------HhccCCCEEEEeCCCCCCC
Q 001041 491 EIRVATELANAAKFIDKLPQGIDTLVGE--------HGTQL--SGGQKQRIAIAR------AILKDPRILLLDEATSALD 554 (1178)
Q Consensus 491 ~~~~~~~~~~~~~~i~~~~~g~~t~~~~--------~g~~l--SgGqkqri~lAR------al~~~~~illlDe~ts~lD 554 (1178)
+. ... .|.+..+.. .-..+ |+||+|++.++. +++.+++...+|+ ++|
T Consensus 67 ------~~-----~~~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 67 ------VN-----FLL---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp ------HH-----HHH---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred ------HH-----HHh---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 00 000 011111100 00123 788888887777 7888888777784 789
Q ss_pred HHhHHHHHHHHHHHh-cCCeEEEEecC-cchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 555 AESEKVVQEALDRIM-VNRTTVIVAHR-LSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 555 ~~~~~~i~~~i~~~~-~~~t~i~itH~-~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+...+. .+.+.... .+.++|..+|. ++.+.. ||+|+ ++|+++..|+++-|.
T Consensus 130 ~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp GGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 987666 66666653 35788889998 888865 99998 999999999987664
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.4e-12 Score=138.81 Aligned_cols=99 Identities=19% Similarity=0.135 Sum_probs=57.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccc-cHHHHHhcCCCC--CCCH
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGG--DATE 1149 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI~~g~~~--~asd 1149 (1178)
++|||||||||||||+++|+++..|++|+|.++|.++.. ...++.+++|+|++.++.. |+.||+.||... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999998843 3456889999999988865 999999988531 1122
Q ss_pred HHHHHHHHHcCchHHHhhccccccc
Q 001041 1150 AEIQAASEMANAHKFICSLQQVRTS 1174 (1178)
Q Consensus 1150 eei~~Al~~A~~~dfI~~LP~gldT 1174 (1178)
+.+.+.++....+.....|..|-.-
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~q 105 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKK 105 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCS
T ss_pred HHHHHHHHHHHHhhhHHhcCcccch
Confidence 3455555533334445556555543
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-11 Score=137.76 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=81.4
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-CCCCcEEEC-CeecCCCCHHHHhcceEEEcCCCCCCc-ccHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYD-PQAGEVLID-GINLKEFQLQWIRKKIGLVSQEPVLFT-GSIK 477 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-~~~G~i~i~-g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~ 477 (1178)
-++++++. .+|++++|+||||||||||+++|+|+.. |..|+|.++ |.+.. ...+..+++++|+++++. -+++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777764 4899999999999999999999999999 999999987 65432 134568999999998874 5899
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 478 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
++-. ...+.+++... ..+.++.+ |+....+....+|| ||+||++||+++
T Consensus 280 e~~l---~~l~~~e~~~~-----~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQG-----FVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCC---CCCCHHHHHHT-----SGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred Hhhh---cCCCHHHHHHH-----HHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 8533 23344443221 12223222 45555566677899 999999999986
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.9e-13 Score=163.39 Aligned_cols=171 Identities=14% Similarity=0.170 Sum_probs=112.2
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc--ccHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT--GSIK 477 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~--~ti~ 477 (1178)
.+++++++.+++|+.++|+||||||||||+++|+|+++|.+|.|.++|.+--..+. +..++++.|.+. .. .|.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 46889999999999999999999999999999999999999999998865222221 345777887765 32 3677
Q ss_pred HHHhcC---CC------CCCHHHHHHHHHHhc-------------HHHHHH---hCCCCccchhc-------CCCCCCCh
Q 001041 478 DNIAYG---KD------DATTEEIRVATELAN-------------AAKFID---KLPQGIDTLVG-------EHGTQLSG 525 (1178)
Q Consensus 478 ~ni~~~---~~------~~~~~~~~~~~~~~~-------------~~~~i~---~~~~g~~t~~~-------~~g~~lSg 525 (1178)
+++... .| +....+...+++... ..+.+. ..|.|....+. .....+||
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 766422 12 234444444444321 122222 22233332221 12235799
Q ss_pred HHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEE--EecCcchhhc
Q 001041 526 GQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVI--VAHRLSTVRN 586 (1178)
Q Consensus 526 Gqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~--itH~~~~~~~ 586 (1178)
|||||.++|. + | ++++|++..+.+.+.+.++. .++|+++ +||.++.+..
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~ 455 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMAD 455 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHH
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHH
Confidence 9999988752 1 6 99999987766555554443 3678774 7999987753
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-12 Score=141.97 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=104.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcC---
Q 001041 411 SGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG--- 483 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~--- 483 (1178)
++++++|+||+|||||||+++|. |+..|+.|+|.++|.+.. ..+...+.+++|++.++ ..++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988775432 12344567778877655 46888888541
Q ss_pred ----------CCCCCHHHHHHHHHHhcHHHHHHhCC-CC------------ccchhcCCCCCCChHHHHHHHHHHHh-cc
Q 001041 484 ----------KDDATTEEIRVATELANAAKFIDKLP-QG------------IDTLVGEHGTQLSGGQKQRIAIARAI-LK 539 (1178)
Q Consensus 484 ----------~~~~~~~~~~~~~~~~~~~~~i~~~~-~g------------~~t~~~~~g~~lSgGqkqri~lARal-~~ 539 (1178)
.+ ...++... +..+. -+ ++.........||| |+ ||+ +.
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~----------l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~ 163 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEA----------LDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFN 163 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHH----------HHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTS
T ss_pred cCCCeEEEECCC-CCHHHHHH----------HHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccC
Confidence 11 12211111 11111 11 11222344457898 55 788 99
Q ss_pred CCCEEEEe----CCCCCCCHHhHHHHHHHHHHHhcCC-eEEEEecCcchhhccCEEEEEeC
Q 001041 540 DPRILLLD----EATSALDAESEKVVQEALDRIMVNR-TTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 540 ~~~illlD----e~ts~lD~~~~~~i~~~i~~~~~~~-t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+|++++|| |||+++|..+...+.+.++.+.+.. ++ .......+++++++.
T Consensus 164 ~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~~~v------~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 164 PPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVAKPV------IELYKSRGVLHQFSG 218 (246)
T ss_dssp CCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHHHHH------HHHHHHTTCEEEEEC
T ss_pred CCcccccccccccccccCCCCcHHHHHHHHHHHHHhHHHH------HHHHhhcCcEEEECC
Confidence 99999999 9999999999988888887754321 11 112233456777764
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2.2e-12 Score=149.35 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=74.8
Q ss_pred cccccceEEeeCCC--------------------EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHH
Q 001041 1059 QVFRDLNLKIRAGK--------------------TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge--------------------~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
.+|+||||+|++|+ .+|||||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998864 1
Q ss_pred HhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchH
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHK 1163 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~d 1163 (1178)
.++|+|++...+-|++||+.++.. ++.+.++++..++.+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~----~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGST----NFPPDTYLEKMKFYE 148 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGS----SCCHHHHHHHTTGGG
T ss_pred --eEEeccccccCCeeehHhhcccch----HHHHHHHHHHcCCCc
Confidence 288999986557899999977632 234666777766654
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-11 Score=138.24 Aligned_cols=147 Identities=16% Similarity=0.238 Sum_probs=91.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHH--HhccCCCCCC-----cEEECCeecC-CCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 408 SISSGTTAALVGQSGSGKSTVISL--IERFYDPQAG-----EVLIDGINLK-EFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~--l~g~~~~~~G-----~i~i~g~~~~-~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
-|++|++++|+||+|||||||++. +.+..++..| .+++++.+.. ......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 588999999999999999999994 4566665433 7888886531 1112233455666554 56777
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh--ccCCCEEEEeCCCCCCCHHh
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI--LKDPRILLLDEATSALDAES 557 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal--~~~~~illlDe~ts~lD~~~ 557 (1178)
+.+..+. ..+.... .+.-++.+ -.+|+++++|||++.+|++.
T Consensus 247 i~~~~~~-~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7765432 2222111 11111111 14799999999999999753
Q ss_pred H------------HHHHHHHHHHh--cCCeEEEEecCcc-------------------hhhc-cCEEEEEeCCE
Q 001041 558 E------------KVVQEALDRIM--VNRTTVIVAHRLS-------------------TVRN-ADMIAVIHRGK 597 (1178)
Q Consensus 558 ~------------~~i~~~i~~~~--~~~t~i~itH~~~-------------------~~~~-~d~i~~l~~G~ 597 (1178)
. ..+.+.|+++. .+.|+|+|+|... .+.+ +|.++.|++++
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 2 34455555553 3789999999822 2333 78888887653
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-11 Score=135.57 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=83.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh---cccCCCCCeEE--------ECCccc-CCCChHHHHHhcccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ---RFYDPDAGHIT--------LDGVEI-QKLQLKWLRQQMGLVSQ 1126 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~---R~y~p~~G~I~--------IDG~dI-~~i~l~~LR~~IsiV~Q 1126 (1178)
+++++.+ ++|++|||+|++||||||++++|. |++.|++|.|. .+|.++ ....+..+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 4555554 899999999999999999999999 99999999999 999999 56678999999999995
Q ss_pred c------cccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1127 E------PVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1127 d------p~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+ .++++.++.+||+ .+++.+++..+..++.|.+....+
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~--------~~~v~~~~s~~~~~~~vr~~l~~~ 138 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR--------TETVGNTASQAAAFPRVREALLRR 138 (252)
T ss_dssp EETTEEEEEETTEECTTGGG--------SHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred cCCCCceEEECCeehhHHHH--------HHHHHHHHHHhcccHHHHHHHHHH
Confidence 4 5688888888874 246777777888888887665544
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.10 E-value=5.4e-11 Score=137.36 Aligned_cols=138 Identities=18% Similarity=0.232 Sum_probs=78.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-cCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHH
Q 001041 414 TAALVGQSGSGKSTVISLIER-FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEE 491 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g-~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~ 491 (1178)
.+.|+||+|+||||+++++.| ++.|..|.+.++|.+...... .+..+++++|.+++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 399999999999999999999 789999999999987654332 256799999988653 2110 010 11112
Q ss_pred HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcC
Q 001041 492 IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVN 571 (1178)
Q Consensus 492 ~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~ 571 (1178)
+.+.++ +..... +++..+ .||| +..+|+++++|||++ ||+.+...+.+.+++..++
T Consensus 109 ~~~~i~-----~~~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLK-----EVAQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHH-----HHTTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHH-----HHHHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 222211 111111 122111 4666 678999999999999 9999999999999887677
Q ss_pred CeEEEEecCcchh
Q 001041 572 RTTVIVAHRLSTV 584 (1178)
Q Consensus 572 ~t~i~itH~~~~~ 584 (1178)
+++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999998754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.2e-12 Score=146.85 Aligned_cols=87 Identities=14% Similarity=0.168 Sum_probs=76.2
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~LR 1118 (1178)
|+.+|++++|. ...+|+++||++++|+.+||+|++|||||||++.|.+++.|++|+|.|.|.|+.+.. ....|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 56677888884 235999999999999999999999999999999999999999999999999986543 23468
Q ss_pred Hhcccccccccccc
Q 001041 1119 QQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~ 1132 (1178)
+++++|+|++.+|.
T Consensus 107 ~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 107 TRMARLAIDRNAFI 120 (337)
T ss_dssp GGSTTGGGCTTEEE
T ss_pred hhheeeccCccccc
Confidence 89999999999985
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.09 E-value=2e-11 Score=138.83 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=69.7
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--HHhccccccccc-cc-cc
Q 001041 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPV-LF-ND 1133 (1178)
Q Consensus 1062 ~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~-LF-~g 1133 (1178)
+.+||++++|+.++|||++||||||+++.|++++.|++|+|.++|.|+.... +..+ |..|++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999986653 3333 568999999987 54 66
Q ss_pred cHHHHHhcC
Q 001041 1134 TIRANIAYG 1142 (1178)
Q Consensus 1134 TIreNI~~g 1142 (1178)
|+++||.++
T Consensus 228 tv~e~l~~~ 236 (359)
T 2og2_A 228 VLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999999764
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.3e-12 Score=141.14 Aligned_cols=92 Identities=23% Similarity=0.359 Sum_probs=78.9
Q ss_pred cccEEEeeeEEeCCCCCCccccccceEEe-------------------eCCCEEEEEcCCCCCHHHHHHHHhcccC--CC
Q 001041 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKI-------------------RAGKTVALVGESGSGKSTVVSLLQRFYD--PD 1098 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~~~~~vL~~isf~I-------------------~~Ge~vaIVG~SGSGKSTL~~lL~R~y~--p~ 1098 (1178)
++.|+++||++.|. +++++|+|++ ++|+.+||+|++|||||||+++|.+++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 56799999999992 5999999998 9999999999999999999999999998 99
Q ss_pred CCeEEE---CCcccCCCChHHHHHhccccccccccc-cccHHHHHhc
Q 001041 1099 AGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1178)
Q Consensus 1099 ~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1178)
+|+|.+ ||.+.. ...|+.+++| |+.-++ .-|+.+|+.+
T Consensus 110 ~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 110 HRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 999999 998852 3467889999 776553 4478888764
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-10 Score=116.38 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=66.6
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--cEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
+|+++ +|+.++|+||+|||||||++++.+++.+ +| .+++++.++.. .
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~--------------------~----- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPL--------------------T----- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCC--------------------C-----
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhH--------------------H-----
Confidence 45665 8999999999999999999999999876 46 44444322110 0
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~ 558 (1178)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2356899999999998 665557
Q ss_pred HHHHHHHHHHh-cCCe-EEEEecC
Q 001041 559 KVVQEALDRIM-VNRT-TVIVAHR 580 (1178)
Q Consensus 559 ~~i~~~i~~~~-~~~t-~i~itH~ 580 (1178)
..+.+.+.... ++++ +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 77778776654 3577 6776764
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-10 Score=129.77 Aligned_cols=144 Identities=18% Similarity=0.128 Sum_probs=95.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH----HHhc--ceEEEcCCCCCC-cccHHHHHh
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ----WIRK--KIGLVSQEPVLF-TGSIKDNIA 481 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~----~~r~--~i~~v~Q~~~l~-~~ti~~ni~ 481 (1178)
.++|++++|+|||||||||+++.|.|++.|.+|+|.++|.|+...... .+++ .+.+++|++.++ ..++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 468999999999999999999999999999999999999998766533 2233 456999998777 468999997
Q ss_pred cCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHH
Q 001041 482 YGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561 (1178)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i 561 (1178)
++.. +.. +.+ =+||. |.. ..-..=.++.-.++|++..++++++||.++. .| +
T Consensus 206 ~~~~-----------~~~---d~v-----liDta-G~~-~~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~------~ 257 (328)
T 3e70_C 206 HAKA-----------RGI---DVV-----LIDTA-GRS-ETNRNLMDEMKKIARVTKPNLVIFVGDALAG-NA------I 257 (328)
T ss_dssp HHHH-----------HTC---SEE-----EEEEC-CSC-CTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-TH------H
T ss_pred HHHh-----------ccc---hhh-----HHhhc-cch-hHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HH------H
Confidence 5310 000 000 01221 110 0011123444558999988888888885554 22 2
Q ss_pred HHHHHHHh--cCCeEEEEecC
Q 001041 562 QEALDRIM--VNRTTVIVAHR 580 (1178)
Q Consensus 562 ~~~i~~~~--~~~t~i~itH~ 580 (1178)
.+.++.+. .+.|.|++||-
T Consensus 258 ~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 258 VEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp HHHHHHHHHHSCCCEEEEECG
T ss_pred HHHHHHHHHhcCCCEEEEeCc
Confidence 22222222 36899999994
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2.6e-11 Score=141.40 Aligned_cols=81 Identities=21% Similarity=0.288 Sum_probs=70.0
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHH--HHHhccccccccccc-ccc
Q 001041 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKW--LRQQMGLVSQEPVLF-NDT 1134 (1178)
Q Consensus 1062 ~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~--LR~~IsiV~Qdp~LF-~gT 1134 (1178)
+++||++++|+.++|||++||||||+++.|.+++.|++|+|.++|.|+.... +.. .|++|++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5789999999999999999999999999999999999999999988875431 223 478899999998754 679
Q ss_pred HHHHHhcC
Q 001041 1135 IRANIAYG 1142 (1178)
Q Consensus 1135 IreNI~~g 1142 (1178)
+++||.++
T Consensus 364 V~e~l~~a 371 (503)
T 2yhs_A 364 IFDAIQAA 371 (503)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999864
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.8e-12 Score=132.28 Aligned_cols=63 Identities=11% Similarity=0.161 Sum_probs=51.5
Q ss_pred ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1058 ~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
.++|+|| ++||.+||+||+|||||||+++|.++ +|++|+|. +.++.. +...+|++|++|||++
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC--
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH
Confidence 3589996 99999999999999999999999999 99999994 344432 3335688999999998
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=6e-12 Score=145.24 Aligned_cols=89 Identities=24% Similarity=0.244 Sum_probs=65.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~--vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
.+++++ +++|++ .+ |+|+||+|++|+. +|||||||||||||+++|+|+. ++|.++........|+
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466777 788853 35 9999999999999 9999999999999999999983 5677776555555577
Q ss_pred hccccccccccc-cccHHHHHhcCC
Q 001041 1120 QMGLVSQEPVLF-NDTIRANIAYGK 1143 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF-~gTIreNI~~g~ 1143 (1178)
.+++|+|++.++ +-|+.||+.||.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~ 107 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGD 107 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC
T ss_pred eEEEEeecCccccccchhhhhhhhh
Confidence 899999999887 569999999884
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.04 E-value=1.2e-11 Score=131.07 Aligned_cols=75 Identities=20% Similarity=0.193 Sum_probs=48.7
Q ss_pred ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC-hHHHHHhccccccccccccc-cH
Q 001041 1058 VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-LKWLRQQMGLVSQEPVLFND-TI 1135 (1178)
Q Consensus 1058 ~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~-l~~LR~~IsiV~Qdp~LF~g-TI 1135 (1178)
.+||+| .+|++||.+||+||||||||||+++|.++++ .|.+++ ++...+ ....|+.+++++|++.+|.. |+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 368999 7999999999999999999999999999995 355554 222221 12346789999999988753 45
Q ss_pred HHHH
Q 001041 1136 RANI 1139 (1178)
Q Consensus 1136 reNI 1139 (1178)
++|+
T Consensus 82 ~~~l 85 (207)
T 1znw_A 82 QGEL 85 (207)
T ss_dssp TTCE
T ss_pred cCCc
Confidence 5554
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-11 Score=133.50 Aligned_cols=106 Identities=16% Similarity=0.142 Sum_probs=72.8
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHHHhccccccccc-------------
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPV------------- 1129 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~------------- 1129 (1178)
|++.+|+.++|+||||||||||+++|.++..|++|+|.+ +|.++........++++++|+|+|-
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9999876542211247999999985
Q ss_pred ---cc-cccHHHHHhcCCCC--CCCHHHHHHHHHHcCc-hHHHhhccccc
Q 001041 1130 ---LF-NDTIRANIAYGKGG--DATEAEIQAASEMANA-HKFICSLQQVR 1172 (1178)
Q Consensus 1130 ---LF-~gTIreNI~~g~~~--~asdeei~~Al~~A~~-~dfI~~LP~gl 1172 (1178)
|| +-|+ +|++|+... ...+..+.++++..++ .+...+.|.-+
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 292 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMF 292 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34 3477 999885321 1234579999999999 47777777543
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.4e-11 Score=129.02 Aligned_cols=71 Identities=17% Similarity=0.136 Sum_probs=50.8
Q ss_pred CccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHH
Q 001041 1057 DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIR 1136 (1178)
Q Consensus 1057 ~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIr 1136 (1178)
+.++|+||||++++|+.+||+||+||||||++++|.+++ |.+.+| .+++.+++|+||++...-|.+
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999987 777665 357889999999854456899
Q ss_pred HHHhc
Q 001041 1137 ANIAY 1141 (1178)
Q Consensus 1137 eNI~~ 1141 (1178)
+|+++
T Consensus 77 ~~~~~ 81 (245)
T 2jeo_A 77 QKAKA 81 (245)
T ss_dssp HHHHH
T ss_pred Hhhhh
Confidence 99864
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.2e-10 Score=118.43 Aligned_cols=111 Identities=17% Similarity=0.204 Sum_probs=74.3
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~ 485 (1178)
++.+++|+.++|+||+|||||||++++.+.+.|..|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHHH-----
Confidence 46778899999999999999999999999987666631 1111 111111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHhHHHHHHH
Q 001041 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEA 564 (1178)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~ 564 (1178)
..+. ..... + . .. -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 80 --------~~~~-----~~~~~---~------~----~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 80 --------FRLK-----HLMDE---G------K----DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp --------HHHH-----HHHHH---T------C----CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred --------HHHH-----HHhcC---c------h----HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 0000 00100 0 0 00 0112245899999999996 8999988888888
Q ss_pred HHHHh-cCCeEEEEecCcc
Q 001041 565 LDRIM-VNRTTVIVAHRLS 582 (1178)
Q Consensus 565 i~~~~-~~~t~i~itH~~~ 582 (1178)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87664 6789999999864
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.97 E-value=3.3e-10 Score=126.51 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=62.5
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC----hHHH--HHhcccccccccccc-ccHHHHHhc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ----LKWL--RQQMGLVSQEPVLFN-DTIRANIAY 1141 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~----l~~L--R~~IsiV~Qdp~LF~-gTIreNI~~ 1141 (1178)
++|+.++|||||||||||+++.|.+++.|++|+|.++|.|+.... +..+ |..+++|+|++.++. .|+++|+.+
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQA 179 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999997654 2333 467999999998775 478899864
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.9e-11 Score=133.75 Aligned_cols=115 Identities=17% Similarity=0.087 Sum_probs=73.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE---CCeecCCCCHHHHh-cceEEEcCCCCCC------cccHH
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIR-KKIGLVSQEPVLF------TGSIK 477 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r-~~i~~v~Q~~~l~------~~ti~ 477 (1178)
.+.+|++++++||||||||||+++|. +.+|..|+|.+ +|.++..... ..+ ..++|++|+|.+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 9988765432 222 3699999999653 4578
Q ss_pred HHH--hcCC--------CC-----CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHH
Q 001041 478 DNI--AYGK--------DD-----ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535 (1178)
Q Consensus 478 ~ni--~~~~--------~~-----~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lAR 535 (1178)
+|+ .|+. .. ....++.++++..++.+. ........|||.+++++.|||
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~----------~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCE----------RYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHH----------HHHHHHHHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHH----------HHHHHHHHHHHHHHHHHHHhc
Confidence 888 4430 00 111234444444433220 122223468998888899987
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.96 E-value=1e-12 Score=145.35 Aligned_cols=129 Identities=16% Similarity=0.164 Sum_probs=94.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCC-CCC-cccHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP-VLF-TGSIK 477 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-~l~-~~ti~ 477 (1178)
.+++++++.+++| ++|+||+|||||||+++|.|++.+ |.|.++|.++........++++++++|++ ..+ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999877 79999998887666666677899999986 333 34677
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001041 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1178)
Q Consensus 478 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1178)
||+....+.....+.. . ....+.+....|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~-------------~----~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG-------------A----SVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp ETCTTTCC--------------------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred ehhhhhhcccCCCcch-------------H----HHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 8887643321111000 0 001111112358999999999999999999974 99975
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.3e-11 Score=139.17 Aligned_cols=140 Identities=18% Similarity=0.196 Sum_probs=96.0
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEE-------------------eCCCEEEEEcCCCCcHHHHHHHHhccCC--CC
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISI-------------------SSGTTAALVGQSGSGKSTVISLIERFYD--PQ 439 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i-------------------~~g~~~~ivG~~GsGKStl~~~l~g~~~--~~ 439 (1178)
.+.|+++||++.|. ++++++++.+ ++|++++|+|++|||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 35688999999992 5899999988 8999999999999999999999999998 99
Q ss_pred CCcEEE---CCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccch
Q 001041 440 AGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTL 515 (1178)
Q Consensus 440 ~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~ 515 (1178)
+|+|.+ ||.+.. . ..++.++++ |+..++ .-|+.+|+.+.. .+..|.. .
T Consensus 110 ~G~i~vi~~d~~~~~---~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~----------------------~l~~~~~-~ 161 (308)
T 1sq5_A 110 HRRVELITTDGFLHP---N-QVLKERGLM-KKKGFPESYDMHRLVKFVS----------------------DLKSGVP-N 161 (308)
T ss_dssp CCCEEEEEGGGGBCC---H-HHHHHHTCT-TCTTSGGGBCHHHHHHHHH----------------------HHTTTCS-C
T ss_pred CCeEEEEecCCccCc---H-HHHHhCCEe-ecCCCCCCccHHHHHHHHH----------------------HHhCCCC-c
Confidence 999999 887642 2 345678888 765443 346666665321 0111111 0
Q ss_pred hcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 516 VGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 516 ~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
+.-.-.+.+.+ +|+..+.+...+++++|+|.|....|.
T Consensus 162 i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 162 VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred eeccccccccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 00001112222 333333355678999999999987774
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.93 E-value=3.8e-11 Score=147.45 Aligned_cols=96 Identities=18% Similarity=0.248 Sum_probs=60.5
Q ss_pred cEEEeeeEEeCCCCCCccccccc----------eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEEECCcccC
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDL----------NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHITLDGVEIQ 1110 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~i----------sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I~IDG~dI~ 1110 (1178)
.|+++|+++.|+.. -.++|+.+ +|++|. +||||+||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 48999999999632 23455555 377775 999999999999999999999989 7999999999963
Q ss_pred CC---ChHHHHHhccccccccccc-cccHHHHHhc
Q 001041 1111 KL---QLKWLRQQMGLVSQEPVLF-NDTIRANIAY 1141 (1178)
Q Consensus 1111 ~i---~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~ 1141 (1178)
.. ....+|++|++|+|++.++ ..|+++||.+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~ 120 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINK 120 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHH
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHH
Confidence 22 2457889999999999876 4699999864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.1e-10 Score=120.53 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=60.1
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccc---cHHHHHhc--C
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND---TIRANIAY--G 1142 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g---TIreNI~~--g 1142 (1178)
.++|+++||+|++|||||||+++|.+++.| ++++|+||+++|+. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999975 68999999999854 56666554 3
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHhh
Q 001041 1143 KGGDATEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1143 ~~~~asdeei~~Al~~A~~~dfI~~ 1167 (1178)
.+.....+.+.++++..++.+++..
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~ 85 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM 85 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC
Confidence 2223455778888888777766544
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.6e-10 Score=132.74 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=64.1
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH-------
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW------- 1116 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~------- 1116 (1178)
.+.++++.+ ..+|+|+||+|++ |.+||+||||||||||+++|.|+++|++|+|.++|.++...+...
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~ 81 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYG 81 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGG
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHH
Confidence 455666533 2389999999999 999999999999999999999999999999999999998765432
Q ss_pred -HHHhccccccccc
Q 001041 1117 -LRQQMGLVSQEPV 1129 (1178)
Q Consensus 1117 -LR~~IsiV~Qdp~ 1129 (1178)
++..+.++.|++.
T Consensus 82 ~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 82 KLKAGVCYAVLETV 95 (483)
T ss_dssp GSCSSEEEEEEEEE
T ss_pred hcCCCceEEEEehh
Confidence 2233466666654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.87 E-value=6.6e-10 Score=115.07 Aligned_cols=82 Identities=22% Similarity=0.347 Sum_probs=68.3
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHHhcccccccccccc
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~ 1132 (1178)
+..-+|+.++|+||||||||||+++|++.++ |..|+ +||+|..-++.+.+++.+ .|+.+|+.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999986 77887 899999999999999876 59999999
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHH
Q 001041 1133 DTIRANIAYGKGGDATEAEIQAASE 1157 (1178)
Q Consensus 1133 gTIreNI~~g~~~~asdeei~~Al~ 1157 (1178)
+++.+|. ||. +.+.+.++++
T Consensus 89 ~~~~~n~-YGt----~~~~v~~~l~ 108 (197)
T 3ney_A 89 GSYQGNM-FGT----KFETVHQIHK 108 (197)
T ss_dssp EEETTEE-EEE----EHHHHHHHHH
T ss_pred hhhhcee-ccc----chhhHHHHHh
Confidence 9999995 883 3444555544
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-10 Score=122.99 Aligned_cols=96 Identities=19% Similarity=0.228 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccc---CCCCCeEEE--------CCcccC-CCChHHHHHhcccccccc------cccc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFY---DPDAGHITL--------DGVEIQ-KLQLKWLRQQMGLVSQEP------VLFN 1132 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y---~p~~G~I~I--------DG~dI~-~i~l~~LR~~IsiV~Qdp------~LF~ 1132 (1178)
+.++||+|++||||||++++|.+.| .++.|.|.. +|.|+. +..+.++++++++++|++ .++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5789999999999999999999888 788999988 788876 367788999999999987 6677
Q ss_pred ccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccccccc
Q 001041 1133 DTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTS 1174 (1178)
Q Consensus 1133 gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT 1174 (1178)
.++.+|+ .++++.+++..+.+|++|...+.++++
T Consensus 85 ~~v~~~~--------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 118 (227)
T 1cke_A 85 EDVSGEI--------RTQEVANAASQVAAFPRVREALLRRQR 118 (227)
T ss_dssp EECHHHH--------TSHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eeCchhh--------CCHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7888876 246899999999999999987766543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.8e-10 Score=124.98 Aligned_cols=101 Identities=15% Similarity=0.124 Sum_probs=70.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHH-Hhcccccccccc------ccccHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLR-QQMGLVSQEPVL------FNDTIR 1136 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I---DG~dI~~i~l~~LR-~~IsiV~Qdp~L------F~gTIr 1136 (1178)
++.+|++++|+|+||||||||+++|. +.+|++|+|.+ +|.++..... ..+ +.+++|+|+|-+ .+-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 45579999999999999999999999 99999999999 9999876542 222 379999999954 24578
Q ss_pred HHH--hcC---------C---CCCCCHHHHHHHHHHcCchH-HHhhccc
Q 001041 1137 ANI--AYG---------K---GGDATEAEIQAASEMANAHK-FICSLQQ 1170 (1178)
Q Consensus 1137 eNI--~~g---------~---~~~asdeei~~Al~~A~~~d-fI~~LP~ 1170 (1178)
+|+ .|+ + .....++.+.+|++..++.+ ...+.|.
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 286 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK 286 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 888 443 0 11122456899999999875 5555443
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3.5e-10 Score=128.68 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=59.6
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
-++.+||++.|.. +..||+++ |+|.+||++||+|++|||||||+++|.|+.+|+.|.|.++|.+.
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~ 109 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERG 109 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccH
Confidence 4889999999963 34699999 99999999999999999999999999999999999999999763
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-12 Score=135.26 Aligned_cols=37 Identities=30% Similarity=0.227 Sum_probs=22.9
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHh-ccC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIE-RFY 436 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~-g~~ 436 (1178)
...+++||++++|++++|+||||||||||+++|. |++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999 998
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.7e-10 Score=121.10 Aligned_cols=90 Identities=10% Similarity=0.025 Sum_probs=66.5
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHHhccccccccccccc-cH----HH
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TI----RA 1137 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TI----re 1137 (1178)
--..++|+.++|+||||||||||+++|.++++| ..|+|.++|.+.+. ..++.++|+||++.+|.. |. .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 346799999999999999999999999999986 68999999987653 236789999999999976 44 58
Q ss_pred HHhcCCC-CCCCHHHHHHHHHH
Q 001041 1138 NIAYGKG-GDATEAEIQAASEM 1158 (1178)
Q Consensus 1138 NI~~g~~-~~asdeei~~Al~~ 1158 (1178)
|+.+... -..+.+++.++++.
T Consensus 86 ~~~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 86 HAEVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EEEETTEEEEEEHHHHHHHHTT
T ss_pred HHHHHhccCCCCHHHHHHHHhc
Confidence 8875311 01245667766653
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=6.3e-10 Score=129.16 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=91.0
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHh
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~ 481 (1178)
-++++|++++|+.++|+|++|||||||+++|.|..+ .+.+.+...+ ...++++.|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999743 3444333332 335777777641 1112222221
Q ss_pred cCC-----CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 001041 482 YGK-----DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 482 ~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1178)
+.. ......... ..+.+. ..+..+ +.. .+...+||+||+||+++||++..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~fl~-~~era~--~lL~vv----Dls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLEFLR-HIARTR--VLLYVL----DAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHHHHH-HHTSSS--EEEEEE----ETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHHHHH-HHHHHH--hhhEEe----CCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 001111111 111110 001000 100 122246999999999999999999999999 999987
Q ss_pred hHHHHHHHHHHHh--cCCeEEEEec
Q 001041 557 SEKVVQEALDRIM--VNRTTVIVAH 579 (1178)
Q Consensus 557 ~~~~i~~~i~~~~--~~~t~i~itH 579 (1178)
... ..+.+.+.. .+.+++.||.
T Consensus 283 ~~~-~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EEE-AVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CHH-HHHHHHHHHHTTTSCEEECCT
T ss_pred hHH-HHHHHHHHHHhcCCeEEEEEC
Confidence 663 333333332 2457776664
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.9e-10 Score=118.82 Aligned_cols=84 Identities=21% Similarity=0.335 Sum_probs=51.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc-----CCCCCeEEE-------CCcccC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY-----DPDAGHITL-------DGVEIQ 1110 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y-----~p~~G~I~I-------DG~dI~ 1110 (1178)
|+++|++|+|+ .++|++ |++++|++++|||++|||||||++.|.+.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258988 999999999999999999999999999998 888888765 333332
Q ss_pred CCC-----------hHHHHHhcccccccccccc
Q 001041 1111 KLQ-----------LKWLRQQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1111 ~i~-----------l~~LR~~IsiV~Qdp~LF~ 1132 (1178)
+.+ .+.+|+.++.+.|+...++
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQ 110 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhccc
Confidence 221 2456777778877644433
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.7e-09 Score=121.82 Aligned_cols=76 Identities=14% Similarity=0.180 Sum_probs=65.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHHHHhcc--ccccccccc-cccHHHHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWLRQQMG--LVSQEPVLF-NDTIRANI 1139 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l----~~LR~~Is--iV~Qdp~LF-~gTIreNI 1139 (1178)
..++|+.++||||+||||||+++.|.+++.|++|+|.++|.|+..... ..++++++ +++|++.++ ..|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999977653 34566666 899998877 46899999
Q ss_pred hcC
Q 001041 1140 AYG 1142 (1178)
Q Consensus 1140 ~~g 1142 (1178)
.++
T Consensus 205 ~~~ 207 (328)
T 3e70_C 205 QHA 207 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.9e-10 Score=124.44 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=65.8
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE---CCeecCCCCHHHHhcceEEEcCCCCC------------
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVL------------ 471 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l------------ 471 (1178)
|++.+|++++|+||||||||||+++|.|+..|+.|+|.+ +|.++.........+.++||+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456689999999999999999999999999999999999 89888655421111369999999953
Q ss_pred ----C-cccHHHHHhcCCC---CCCHHHHHHHHHHhcH-HHHHHhCC
Q 001041 472 ----F-TGSIKDNIAYGKD---DATTEEIRVATELANA-AKFIDKLP 509 (1178)
Q Consensus 472 ----~-~~ti~~ni~~~~~---~~~~~~~~~~~~~~~~-~~~i~~~~ 509 (1178)
| .-|+ +|+.|+.. .....++.++++..++ .+.....|
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~ 289 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYV 289 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHH
Confidence 3 3477 88887531 1223567777777777 34444444
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-10 Score=130.05 Aligned_cols=101 Identities=13% Similarity=0.157 Sum_probs=67.8
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCCeEEEC-CcccCCCChHHHHHhccccccccccccc-cHH
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-PDAGHITLD-GVEIQKLQLKWLRQQMGLVSQEPVLFND-TIR 1136 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-p~~G~I~ID-G~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIr 1136 (1178)
.++++++. .+|+++||+|+||||||||+++|.++.. |..|+|.++ |.+.. ...++.++++||++.|++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 47777775 4899999999999999999999999999 999999997 87653 2346789999999998865 898
Q ss_pred HHHhcCCCCCCCHHHHH----HHHHHcCchHHHhhcc
Q 001041 1137 ANIAYGKGGDATEAEIQ----AASEMANAHKFICSLQ 1169 (1178)
Q Consensus 1137 eNI~~g~~~~asdeei~----~Al~~A~~~dfI~~LP 1169 (1178)
++-.. ..+.+++. ++++.+++.+|-...|
T Consensus 280 e~~l~----~l~~~e~~~~~~e~l~~~gl~~f~~~~~ 312 (358)
T 2rcn_A 280 EFGLW----HLEPEQITQGFVEFHDYLGHCKYRDCKH 312 (358)
T ss_dssp TCCCC----CCCHHHHHHTSGGGGGGTTCSSSTTCCS
T ss_pred Hhhhc----CCCHHHHHHHHHHHHHHcCCchhcCCCc
Confidence 86322 34555543 4455566655544433
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.6e-10 Score=128.11 Aligned_cols=90 Identities=21% Similarity=0.176 Sum_probs=56.7
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++||+++|+. .++|+|+||+| +|||+||||||||++.|+++..|..| .+|.++...+. ..++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~t-~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKKT-VQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC-----C-CEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCccc-eeeee
Confidence 46999999999963 35999999998 99999999999999999999876555 24544432111 12467
Q ss_pred ccccccccccc-cccHHHHHhcCC
Q 001041 1121 MGLVSQEPVLF-NDTIRANIAYGK 1143 (1178)
Q Consensus 1121 IsiV~Qdp~LF-~gTIreNI~~g~ 1143 (1178)
+++++|++.++ .-||.||+.++.
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp EECC------CEEEEEEECC----
T ss_pred EEEEEecCCcccceeeeechhhhh
Confidence 89999998876 679999998874
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-09 Score=112.15 Aligned_cols=81 Identities=21% Similarity=0.208 Sum_probs=65.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEE----------ECCcccCCCChHHHHHhccccccccccccccHHH
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I~----------IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1178)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||+|+..++.+.+++. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 37899999999999999999999999863 345553 58999999999999874 67999999999999
Q ss_pred HHhcCCCCCCCHHHHHHHHH
Q 001041 1138 NIAYGKGGDATEAEIQAASE 1157 (1178)
Q Consensus 1138 NI~~g~~~~asdeei~~Al~ 1157 (1178)
| .||. +.+++.++++
T Consensus 80 n-~yg~----~~~~i~~~l~ 94 (180)
T 1kgd_A 80 A-MYGT----KLETIRKIHE 94 (180)
T ss_dssp E-EEEE----EHHHHHHHHH
T ss_pred c-cccc----cHHHHHHHHH
Confidence 9 4763 3556666665
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.7e-09 Score=127.68 Aligned_cols=81 Identities=22% Similarity=0.284 Sum_probs=69.7
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC--------------------------------------CCCCe
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD--------------------------------------PDAGH 1101 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~--------------------------------------p~~G~ 1101 (1178)
+|+++||++++| .++|||++|||||||+++|..+.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999965553 45789
Q ss_pred EEECCcccCCCChHHHHHh-ccccccccccccccHHHHHhc
Q 001041 1102 ITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLFNDTIRANIAY 1141 (1178)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~-IsiV~Qdp~LF~gTIreNI~~ 1141 (1178)
|++||.+++..++.++++. +++++|++.++-++-.++..+
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ 169 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGL 169 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHH
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHH
Confidence 9999999988788888887 799999998887776655543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.77 E-value=1.8e-09 Score=112.54 Aligned_cols=70 Identities=21% Similarity=0.211 Sum_probs=57.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY 1141 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~ 1141 (1178)
.+++|+.++|+|++||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. .+.|+++|+.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~ 74 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAAD 74 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHH
Confidence 4789999999999999999999999998 678999999998754321 1345789999876 56788999854
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-09 Score=113.25 Aligned_cols=71 Identities=11% Similarity=0.143 Sum_probs=57.5
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccc-cHHHHH
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANI 1139 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~g-TIreNI 1139 (1178)
|+++++|+.+||+||||||||||+++|.+++ | .+.++|.++...+....+..+++++|++.+|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 6788999999999999999999999999997 3 699999998887776678899999999988865 334443
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=4.5e-10 Score=130.65 Aligned_cols=117 Identities=17% Similarity=0.214 Sum_probs=81.3
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC----CChHHHH
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK----LQLKWLR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~----i~l~~LR 1118 (1178)
++++|++|.|. ...+|+++ + .++|+.++|+|||||||||++++|++++.|++|+|.++|.++.. ++...++
T Consensus 144 ~~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~ 218 (418)
T 1p9r_A 144 LDLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN 218 (418)
T ss_dssp CCGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB
T ss_pred CCHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc
Confidence 45666666663 23478888 5 48999999999999999999999999999999999999988732 1122345
Q ss_pred Hhccccc---------cccccc--c-----ccHHHHHhcCCC--------CCCCHHHHHHHHHHcCchHH
Q 001041 1119 QQMGLVS---------QEPVLF--N-----DTIRANIAYGKG--------GDATEAEIQAASEMANAHKF 1164 (1178)
Q Consensus 1119 ~~IsiV~---------Qdp~LF--~-----gTIreNI~~g~~--------~~asdeei~~Al~~A~~~df 1164 (1178)
+++++++ |||.++ . -|+++|+.++.. ...+..+..+.++..++.++
T Consensus 219 ~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 219 PRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp GGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred cccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 6666654 999763 2 388999875311 11122344555666666554
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.4e-10 Score=125.59 Aligned_cols=91 Identities=10% Similarity=0.085 Sum_probs=61.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCC--
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGD-- 1146 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~-- 1146 (1178)
+++.+|||+|+||||||||+++|.+++.+. | . . |+.+.+|+||+++|++++++|+.++.+.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 356899999999999999999999999874 2 1 1 45566779999999999999998752100
Q ss_pred CCHHHHHHHHHHcCchHHHhhcccccccc
Q 001041 1147 ATEAEIQAASEMANAHKFICSLQQVRTSR 1175 (1178)
Q Consensus 1147 asdeei~~Al~~A~~~dfI~~LP~gldT~ 1175 (1178)
.+....-++.+.+.+.+++..|++|+||.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~ 121 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHP 121 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC-----
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccc
Confidence 00000111223445778999999998763
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.6e-09 Score=115.19 Aligned_cols=78 Identities=21% Similarity=0.249 Sum_probs=50.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh-ccc------------CCCCCeEEECCcccCCCChHHHHHhccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ-RFY------------DPDAGHITLDGVEIQKLQLKWLRQQMGLVS 1125 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~-R~y------------~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~ 1125 (1178)
.-.+++||++++|+.+||+||||||||||+++|. +++ +|..|.+ +|+++...+...++.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 3689999999999999999999999999999999 999 7788876 7877776676666543 34
Q ss_pred cccccccccHHHHHhcC
Q 001041 1126 QEPVLFNDTIRANIAYG 1142 (1178)
Q Consensus 1126 Qdp~LF~gTIreNI~~g 1142 (1178)
++.+++.+++..|+ ||
T Consensus 90 ~~~~~~~~~~~~~~-~~ 105 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YG 105 (231)
T ss_dssp TTCEEEEEEETTEE-EE
T ss_pred cCceehhhhhcccc-CC
Confidence 66777666666665 44
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-09 Score=122.82 Aligned_cols=106 Identities=20% Similarity=0.203 Sum_probs=80.8
Q ss_pred eeEEeCCCCCCccccccc-eEEeeCCCEEEEEcCCCCCHHHHHHHHhccc--CCCC----Ce-EEECCcccCCCChHHHH
Q 001041 1047 HVSFKYPSRPDVQVFRDL-NLKIRAGKTVALVGESGSGKSTVVSLLQRFY--DPDA----GH-ITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1047 nVsf~Y~~~~~~~vL~~i-sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y--~p~~----G~-I~IDG~dI~~i~l~~LR 1118 (1178)
.+++.++ .|+.+ ++.|++|+.++|+||+|||||||++.|++.+ +|++ |+ |+|||.+.- .+
T Consensus 112 ~isTG~~------~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~ 179 (349)
T 1pzn_A 112 RISTGSK------SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RP 179 (349)
T ss_dssp EECCSCH------HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CH
T ss_pred eecCCCH------HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CH
Confidence 4555553 45555 6899999999999999999999999999999 6666 67 999998762 36
Q ss_pred HhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhc
Q 001041 1119 QQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSL 1168 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~L 1168 (1178)
+++++++|++.++..++.+||.+... .+.++..+.++. +..++.++
T Consensus 180 ~~i~~i~q~~~~~~~~v~~ni~~~~~--~~~~~~~~~l~~--~~~~~~~l 225 (349)
T 1pzn_A 180 ERIREIAQNRGLDPDEVLKHIYVARA--FNSNHQMLLVQQ--AEDKIKEL 225 (349)
T ss_dssp HHHHHHHHTTTCCHHHHGGGEEEEEC--CSHHHHHHHHHH--HHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHhhCEEEEec--CChHHHHHHHHH--HHHHHHHh
Confidence 78999999999999999999998642 333344444443 34556554
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.8e-09 Score=125.14 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=50.8
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ 454 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~ 454 (1178)
.+|+++||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 479999999999 999999999999999999999999999999999999887554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-09 Score=120.76 Aligned_cols=97 Identities=16% Similarity=0.244 Sum_probs=58.1
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE---CCcccCCCChHHHHHhcccccccccccc-----ccHHH
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL---DGVEIQKLQLKWLRQQMGLVSQEPVLFN-----DTIRA 1137 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I---DG~dI~~i~l~~LR~~IsiV~Qdp~LF~-----gTIre 1137 (1178)
+++.+|++++|+|+||+|||||+++|.++..|..|+|.+ +|.++.... +..+..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456689999999999999999999999999999999999 898886532 222223899999997654 477 9
Q ss_pred HHh--cC-------------C-CCCCCHHHHHHHHHHcCchHH
Q 001041 1138 NIA--YG-------------K-GGDATEAEIQAASEMANAHKF 1164 (1178)
Q Consensus 1138 NI~--~g-------------~-~~~asdeei~~Al~~A~~~df 1164 (1178)
||. |. . .....+..+.+|++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 983 21 0 011223568899998888653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-10 Score=122.78 Aligned_cols=127 Identities=14% Similarity=0.176 Sum_probs=96.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC---CCCCCcEEE--------CCeecCC-CCHHHHhcceEEEcCCC------CCCc
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY---DPQAGEVLI--------DGINLKE-FQLQWIRKKIGLVSQEP------VLFT 473 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~---~~~~G~i~i--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~l~~ 473 (1178)
+.+++|+|++||||||+++.|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 5689999999999999999999876 677888877 6776653 45667888999999987 4456
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 001041 474 GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1178)
Q Consensus 474 ~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1178)
.++.+++. .+++..++..+..++.+.....+..+.+ .++|.-++|+ .++++++.+++++++.++.
T Consensus 85 ~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~ 150 (227)
T 1cke_A 85 EDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDAS 150 (227)
T ss_dssp EECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECC
T ss_pred eeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCC
Confidence 67878764 3567777777777777766555555554 3456667887 5667788899999998874
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-08 Score=112.51 Aligned_cols=138 Identities=12% Similarity=0.160 Sum_probs=89.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCH
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT 489 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~ 489 (1178)
++|++++++|++||||||++..|.+.+.+.+|. ++.++.+|++ ..+..+++..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~------------------~V~lv~~D~~--r~~a~eqL~~------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK------------------KIAFITTDTY--RIAAVEQLKT------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC------------------CEEEEECCCS--STTHHHHHHH-------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC------------------EEEEEecCcc--cchHHHHHHH-------
Confidence 479999999999999999999999999887772 5778888873 3333333321
Q ss_pred HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 490 ~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
..+.. |...... ..++..+.+|+++ ++++++|+| |+++|+.....+.+..+-..
T Consensus 156 -----~~~~~-----------gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 156 -----YAELL-----------QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -----HHTTT-----------TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -----HHHhc-----------CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 11100 1111111 1234567778865 899999999 99999877666655433221
Q ss_pred ---cCCeEEEE--ecCcchhhc-cCEEEEEeCCEEEE
Q 001041 570 ---VNRTTVIV--AHRLSTVRN-ADMIAVIHRGKIVE 600 (1178)
Q Consensus 570 ---~~~t~i~i--tH~~~~~~~-~d~i~~l~~G~i~~ 600 (1178)
.+.+++++ +|..+.+.. +|++..++.+.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 23345555 788776654 66665566666664
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-08 Score=112.85 Aligned_cols=132 Identities=17% Similarity=0.156 Sum_probs=88.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+..+++++.|+.. . ++++|+ +|++++++|++||||||++..|.+.+.+..|+|.+.+.|+..-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 3445666667421 1 677887 9999999999999999999999999998889998877654321110
Q ss_pred EEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCE
Q 001041 464 LVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRI 543 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~i 543 (1178)
+. .....+. . |++-... +......+.+|.+|+++...++|+
T Consensus 143 --------------~q------------l~~~~~~-------~----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------EQ------------LRLLGEK-------V----GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------HH------------HHHHHHH-------H----TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------HH------------HHHhccc-------C----CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 00 0000010 0 2211111 112344566789999998899999
Q ss_pred EEEeCC-CCCCCHHhHHHHHHHHHHH
Q 001041 544 LLLDEA-TSALDAESEKVVQEALDRI 568 (1178)
Q Consensus 544 lllDe~-ts~lD~~~~~~i~~~i~~~ 568 (1178)
+|+|+| ++++|......+.+..+..
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhc
Confidence 999999 9999988777666655543
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.70 E-value=8.5e-09 Score=114.99 Aligned_cols=110 Identities=16% Similarity=0.370 Sum_probs=74.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~ 485 (1178)
++..++|++++|+|++||||||++..|.+.+.+.+|+|.+.+.|... ....++
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~eq------ 150 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAIEQ------ 150 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHHHH------
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHHHH------
Confidence 44567899999999999999999999999999888888876655321 011111
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH---HHHHHhccCCCEEEEeCCCCCCCHHhHHHHH
Q 001041 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI---AIARAILKDPRILLLDEATSALDAESEKVVQ 562 (1178)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri---~lARal~~~~~illlDe~ts~lD~~~~~~i~ 562 (1178)
+...++ .+ |++. + ...|||+.|++ +|+||+.++++++|+|+|.. .+....+.
T Consensus 151 ------L~~~~~---------~~--gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~ 205 (306)
T 1vma_A 151 ------LKIWGE---------RV--GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLM 205 (306)
T ss_dssp ------HHHHHH---------HH--TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHH
T ss_pred ------HHHHHH---------Hc--CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHH
Confidence 111111 11 2221 1 24589999999 99999999999999999974 34444444
Q ss_pred HHHHH
Q 001041 563 EALDR 567 (1178)
Q Consensus 563 ~~i~~ 567 (1178)
+.+.+
T Consensus 206 ~eL~~ 210 (306)
T 1vma_A 206 EELRK 210 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.69 E-value=4.3e-09 Score=125.74 Aligned_cols=98 Identities=21% Similarity=0.236 Sum_probs=73.3
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccccccc--ccHH
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN--DTIR 1136 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~--gTIr 1136 (1178)
.+++++++.+++|+.++|+|||||||||++++|+++++|++|.|.|+|.+--.++. +..++++.|++. .. -|++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999976322221 345677777765 33 2666
Q ss_pred HHHhcCC---C-----CCCCHHHHHHHHHHcC
Q 001041 1137 ANIAYGK---G-----GDATEAEIQAASEMAN 1160 (1178)
Q Consensus 1137 eNI~~g~---~-----~~asdeei~~Al~~A~ 1160 (1178)
++++... + ++.+++|...+++.++
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~ 355 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMS 355 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHH
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhc
Confidence 6654221 1 2466677777666553
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.3e-09 Score=115.33 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=45.3
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHH
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANI 1139 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI 1139 (1178)
.++|+++||+||||||||||+++|.++++|+ | ..+++|+||.+.++++.++|+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~ 71 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPR 71 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHh
Confidence 5789999999999999999999999999976 4 246778888888877777776
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-08 Score=109.90 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=67.3
Q ss_pred EeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-------CCCeEEECCcccCCCChHHH
Q 001041 1045 LHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-------DAGHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1045 f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-------~~G~I~IDG~dI~~i~l~~L 1117 (1178)
++++++.++.- + .+|.+ -|++||.++|+||||||||||++.|++.+.+ ..|.|++++.+.. .
T Consensus 4 ~~~i~tG~~~L-D-~~l~g---gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~---- 72 (231)
T 4a74_A 4 IGRISTGSKSL-D-KLLGG---GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--R---- 72 (231)
T ss_dssp CCEECCSCHHH-H-HHTTS---SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--C----
T ss_pred CCccCCCChhH-H-hHhcC---CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--C----
Confidence 45666666421 1 24544 6999999999999999999999999997766 4558889887631 1
Q ss_pred HHhccccccccccccccHHHHHhcCC
Q 001041 1118 RQQMGLVSQEPVLFNDTIRANIAYGK 1143 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~ 1143 (1178)
+++++.++|+..++..|+.+|+.+..
T Consensus 73 ~~~i~~~~~~~~~~~~~~~~~~~~~~ 98 (231)
T 4a74_A 73 PERIREIAQNRGLDPDEVLKHIYVAR 98 (231)
T ss_dssp HHHHHHHHHHTTSCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHcCCCHHHHhhcEEEEe
Confidence 35678888988888889999998864
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-08 Score=104.43 Aligned_cols=30 Identities=40% Similarity=0.471 Sum_probs=28.2
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||||++++||.++||||||||||||+++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 689999999999999999999999999744
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.61 E-value=5e-09 Score=110.55 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=55.3
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCc-ccHHHHHh
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFT-GSIKDNIA 481 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~ 481 (1178)
|+++++|++++|+||||||||||+++|.|+++ .+.+++.++........+..++|++|++..|. .++.+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999974 68888877766554455678999999997764 45555554
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.2e-09 Score=109.98 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=49.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
|++++|+|++||||||++++|+++++ ++| |.+||.++.++. .+|+++++++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec
Confidence 79999999999999999999999999 999 999999987554 5789999999984
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.1e-10 Score=130.94 Aligned_cols=146 Identities=17% Similarity=0.197 Sum_probs=92.8
Q ss_pred CccccceeEEEeCC-------CEEEEEcCCCCcHHHHHHHHhccC----CCCCCcEEECCeecCCCCHHHHhcceEEEcC
Q 001041 399 EQIFSGFSISISSG-------TTAALVGQSGSGKSTVISLIERFY----DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQ 467 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g-------~~~~ivG~~GsGKStl~~~l~g~~----~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q 467 (1178)
..+++++++.+++| +.++|+||+|+|||||+++|.|++ .+.+|.+..++.++..+-....+..|.+++|
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE 110 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE 110 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcc
Confidence 35889999999877 899999999999999999999998 6677877766655432211111457999999
Q ss_pred CCCCCcccHHHHHhcCCCCCC------HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 468 EPVLFTGSIKDNIAYGKDDAT------TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 468 ~~~l~~~ti~~ni~~~~~~~~------~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
.+.++. ++.|++........ ..... +. +...+.. -++.. ...+...||+|+|||++++
T Consensus 111 ~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~---~~--i~~~l~~--~~li~-at~~~~~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 111 IHRLNK-AVEELLYSAIEDFQIDIMIGKGPSA---KS--IRIDIQP--FTLVG-ATTRSGLLSSPLRSRFGII------- 174 (334)
T ss_dssp GGGCCH-HHHHHHHHHHHTSCCCC--------------------CC--CEEEE-EESCGGGSCHHHHTTCSEE-------
T ss_pred hhhcCH-HHHHHHHHHHHhcccceeeccCccc---cc--ccccCCC--eEEEE-ecCCcccCCHHHHHhcCce-------
Confidence 887765 78888742211110 00000 00 0111111 12221 2233457999999998654
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 542 RILLLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
.+||+.+...+.+.++...
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHH
T ss_pred ---------eeCCCCCHHHHHHHHHHHH
Confidence 6788888777777776653
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-10 Score=128.80 Aligned_cols=135 Identities=19% Similarity=0.245 Sum_probs=90.7
Q ss_pred EEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEE
Q 001041 386 LRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLV 465 (1178)
Q Consensus 386 ~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v 465 (1178)
++++...|. ...+++++++++++| ++|+||+|||||||+++|.++.. .|.|.++|.++.+......++.+.++
T Consensus 52 l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~ 124 (278)
T 1iy2_A 52 LKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 124 (278)
T ss_dssp HHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHH
T ss_pred HHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHH
Confidence 345555553 235899999999999 99999999999999999999885 78999998776544333445667888
Q ss_pred cCCCC-CC-cccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 466 SQEPV-LF-TGSIKDNIA-YGKDDAT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 466 ~Q~~~-l~-~~ti~~ni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+|++. .+ .-++.||+. ++..... .++.... +.+.+ ..|||||+||..+++|+
T Consensus 125 ~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~lsgg~~~~~~i~~a~ 184 (278)
T 1iy2_A 125 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMAA 184 (278)
T ss_dssp HHHHHTSCSEEEEEETHHHHHCC--------CHHHHHH-----HHHHH---------------HHHTTCCTTCCEEEEEE
T ss_pred HHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEEe
Confidence 88763 23 345667773 3221110 0111111 11111 13789999999999999
Q ss_pred ccCCCEEEEeCC
Q 001041 538 LKDPRILLLDEA 549 (1178)
Q Consensus 538 ~~~~~illlDe~ 549 (1178)
..+|++ ||++
T Consensus 185 t~~p~~--ld~~ 194 (278)
T 1iy2_A 185 TNRPDI--LDPA 194 (278)
T ss_dssp ESCTTS--SCHH
T ss_pred cCCchh--CCHh
Confidence 999876 4543
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.2e-09 Score=116.24 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=52.4
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-------
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL------- 1114 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l------- 1114 (1178)
.|+++|++..|. . +|++++ +.++|+||||||||||+++|.+++.|++|.|.++|.++...+.
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488888875552 1 466667 8999999999999999999999999999999999999844332
Q ss_pred -HHHHHhccccccc
Q 001041 1115 -KWLRQQMGLVSQE 1127 (1178)
Q Consensus 1115 -~~LR~~IsiV~Qd 1127 (1178)
..+|.++++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346789999986
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.5e-09 Score=115.57 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=62.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHh---ccCCCCCCcEE--------ECCeecC-CCCHHHHhcceEEEcCC------CCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIE---RFYDPQAGEVL--------IDGINLK-EFQLQWIRKKIGLVSQE------PVL 471 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~--------i~g~~~~-~~~~~~~r~~i~~v~Q~------~~l 471 (1178)
++|++++|+||+||||||++++|. |+..++.|.+. .+|.++. ......+++++++++|+ .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999998 8999884 45678899999999965 356
Q ss_pred CcccHHHHHh
Q 001041 472 FTGSIKDNIA 481 (1178)
Q Consensus 472 ~~~ti~~ni~ 481 (1178)
+..++.+||.
T Consensus 105 ~~~~v~~~i~ 114 (252)
T 4e22_A 105 EGEDVSNEIR 114 (252)
T ss_dssp TTEECTTGGG
T ss_pred CCeehhHHHH
Confidence 6778888865
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.56 E-value=1.7e-07 Score=106.71 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=28.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
-+++|+++.|.||+|||||||+..++.......|.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~ 91 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGI 91 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe
Confidence 47899999999999999999988888665444443
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-10 Score=126.51 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=91.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 385 ELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 385 ~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
+++++...|. ...+++++++++++| ++|+||+|||||||+++|.++.. .|.|.++|.++........++.+.+
T Consensus 27 ~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 4455655553 235899999999999 99999999999999999999875 7899999877644433344556778
Q ss_pred EcCCCC-CC-cccHHHHHh-cCCCCCC-----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 465 VSQEPV-LF-TGSIKDNIA-YGKDDAT-----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 465 v~Q~~~-l~-~~ti~~ni~-~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
++|++. .+ .-++.||+. ++..... .++..+. +.+.+ ..|||||+||..+++|
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~-----~~~ll---------------~~l~g~~~~~~~i~~a 159 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQT-----LNQLL---------------VEMDGFEKDTAIVVMA 159 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHH-----HHHHH---------------HHHHTCCTTCCEEEEE
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHH-----HHHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 22 345666663 3221110 0111111 11111 1367999999999999
Q ss_pred hccCCCEEEEeCCC
Q 001041 537 ILKDPRILLLDEAT 550 (1178)
Q Consensus 537 l~~~~~illlDe~t 550 (1178)
+..+|++ ||+++
T Consensus 160 ~t~~p~~--ld~~l 171 (254)
T 1ixz_A 160 ATNRPDI--LDPAL 171 (254)
T ss_dssp EESCGGG--SCGGG
T ss_pred ccCCchh--CCHHH
Confidence 9999886 56654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-08 Score=114.17 Aligned_cols=107 Identities=21% Similarity=0.277 Sum_probs=74.4
Q ss_pred eeeEEeCCCCCCccccccceE-------EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CCeEEECCcccCCCChHHH
Q 001041 1046 HHVSFKYPSRPDVQVFRDLNL-------KIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AGHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1046 ~nVsf~Y~~~~~~~vL~~isf-------~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~-~G~I~IDG~dI~~i~l~~L 1117 (1178)
.+++++|... ..+.|+++.+ .+++|+.++|+|||||||||++++|+++++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5788888543 3467888887 78999999999999999999999999999997 56666554444 333 3
Q ss_pred HHhcccccccccc-----ccccHHHHHhcCCC----CCCCHHHHHHHHH
Q 001041 1118 RQQMGLVSQEPVL-----FNDTIRANIAYGKG----GDATEAEIQAASE 1157 (1178)
Q Consensus 1118 R~~IsiV~Qdp~L-----F~gTIreNI~~g~~----~~asdeei~~Al~ 1157 (1178)
+...++|+|.+.- |...|+.-++..+. ++.+|.|..+.+.
T Consensus 167 ~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillDEp~d~e~~~~~~ 215 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVGEMRDLETIRLAL 215 (356)
T ss_dssp CCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEESCCCSHHHHHHHH
T ss_pred hccccceeeeeeccccCCHHHHHHHHhhhCcCEEecCCCCCHHHHHHHH
Confidence 4456788887653 33345555554421 2456777665543
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.54 E-value=9.9e-09 Score=114.01 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=44.4
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE---CCeecCCCCHHHHhcceEEEcCCCCCCc-----ccHHH
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI---DGINLKEFQLQWIRKKIGLVSQEPVLFT-----GSIKD 478 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~~ 478 (1178)
+++.+|++++|+|+||+|||||+++|.|+..|..|+|.+ +|.++.... ...+..++|++|+|-+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 456789999999999999999999999999999999998 887765432 122223899999997653 578 9
Q ss_pred HHh
Q 001041 479 NIA 481 (1178)
Q Consensus 479 ni~ 481 (1178)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=7.5e-09 Score=116.97 Aligned_cols=71 Identities=15% Similarity=0.171 Sum_probs=63.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc--------CCCCCeEEECCcccCCCC---------------hHHHHHhcccc---c
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFY--------DPDAGHITLDGVEIQKLQ---------------LKWLRQQMGLV---S 1125 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y--------~p~~G~I~IDG~dI~~i~---------------l~~LR~~IsiV---~ 1125 (1178)
+.++|+|++||||||+++.|++++ .|+.|+|.|||.++...+ ..++++.++.+ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999998 789999999999998774 46789999988 7
Q ss_pred cccc-cccccHHHHHhcC
Q 001041 1126 QEPV-LFNDTIRANIAYG 1142 (1178)
Q Consensus 1126 Qdp~-LF~gTIreNI~~g 1142 (1178)
|++. .|+.++.||+.++
T Consensus 85 q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHTSCCCSEEEEEEETTC
T ss_pred hcCCCCCCEEEEeCCCCC
Confidence 9886 4799999999776
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-08 Score=114.21 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=35.5
Q ss_pred eeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc-cCCCCCeEEECCcccCCCChHHHHHhcccc
Q 001041 1046 HHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF-YDPDAGHITLDGVEIQKLQLKWLRQQMGLV 1124 (1178)
Q Consensus 1046 ~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~-y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV 1124 (1178)
+|++..|.. ..+++|++|+| +|||++|+|||||++.|++. ..|++| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888953 35999999998 99999999999999999998 888999 9999988754 22 1 4678999
Q ss_pred ccccccc-cccHHHHHhcC
Q 001041 1125 SQEPVLF-NDTIRANIAYG 1142 (1178)
Q Consensus 1125 ~Qdp~LF-~gTIreNI~~g 1142 (1178)
+|++-++ .-||.||..+|
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp EC---CCEEEEEEEEC---
T ss_pred ecCCCcccCcchhhhhhhh
Confidence 9987654 55888888765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.51 E-value=9.4e-11 Score=134.72 Aligned_cols=166 Identities=17% Similarity=0.173 Sum_probs=104.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc------------cCCCCCCcEEECCeecCCCCH-HHHhcce---EEEcCCCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIER------------FYDPQAGEVLIDGINLKEFQL-QWIRKKI---GLVSQEPVL 471 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g------------~~~~~~G~i~i~g~~~~~~~~-~~~r~~i---~~v~Q~~~l 471 (1178)
.+++|.+++|+|++|+|||||+++|.| ..+|+.|.|.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 457899999999999999999999999 567889999998743211100 0001122 366677765
Q ss_pred Ccc-cHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchh----cCCCCCCChHHHHHHHHHHHhccCC--CEE
Q 001041 472 FTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLV----GEHGTQLSGGQKQRIAIARAILKDP--RIL 544 (1178)
Q Consensus 472 ~~~-ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~----~~~g~~lSgGqkqri~lARal~~~~--~il 544 (1178)
..+ |..+++ .. .....++.+ +..-..+ ......++|+. +| +++
T Consensus 96 ~~~~s~~e~L-------~~-~fl~~ir~~----------d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 96 TKGASTGVGL-------GN-AFLSHVRAV----------DAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CCCCCSSSSS-------CH-HHHHHHTTC----------SEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred ccCCcHHHHH-------HH-HHHHHHHHH----------HHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence 532 222211 11 111111111 1111111 12223355542 88 999
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHH-hc-CCeEEEEecCcchhhc-cCEEE-EEeCC-EEEEecChh
Q 001041 545 LLDEATSALDAESEKVVQEALDRI-MV-NRTTVIVAHRLSTVRN-ADMIA-VIHRG-KIVEKGTHS 605 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~-~~-~~t~i~itH~~~~~~~-~d~i~-~l~~G-~i~~~g~~~ 605 (1178)
++|||++.+|++..+...+.++.. .+ +.|+ ++|.+..+.. ||++. +|++| +++..|+.+
T Consensus 146 ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 146 IIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred hchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 999999999999888777777766 43 4554 3999887754 89999 99999 887666543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.4e-09 Score=128.93 Aligned_cols=157 Identities=14% Similarity=0.161 Sum_probs=98.4
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC-CcEEECCeecCCCCHHHHhcceEEEcCCC--------
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQA-GEVLIDGINLKEFQLQWIRKKIGLVSQEP-------- 469 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~-G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~-------- 469 (1178)
..+++++++.+++|+.++|+||+|||||||+++|.+++++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 458899999999999999999999999999999999998877 7788877655443 34688887754
Q ss_pred --------------CCC-cccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHH
Q 001041 470 --------------VLF-TGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIA 534 (1178)
Q Consensus 470 --------------~l~-~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lA 534 (1178)
|.+ ..++.+|+..+........+... ......+.+.. ++.. ......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~----~~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGD----VRHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCE----ECCC-CC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCce----EEec-hhhcCCccccccccccCc
Confidence 222 22333333321110000000000 00001111111 1110 122235999999999999
Q ss_pred HHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHH
Q 001041 535 RAILKDPRILLLDEATSALDAESEKVVQEALDR 567 (1178)
Q Consensus 535 Ral~~~~~illlDe~ts~lD~~~~~~i~~~i~~ 567 (1178)
+....++.+|+|||.-. |++.....+.+.+++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 788777766666654
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.4e-08 Score=110.26 Aligned_cols=91 Identities=16% Similarity=0.205 Sum_probs=72.4
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc---------------------------
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF--------------------------- 1094 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~--------------------------- 1094 (1178)
.|+++|. .+|. ++++|++.+| .++|||++|||||||+.+|..+
T Consensus 5 ~L~i~nf-r~~~--------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~ 74 (322)
T 1e69_A 5 KLYLKGF-KSFG--------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPP 74 (322)
T ss_dssp EEEEESB-TTBC--------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCC
T ss_pred EEEEeCc-eeec--------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCC
Confidence 4777772 2342 3568889999 9999999999999999999833
Q ss_pred -----------------------cCCCCCeEEECCcccCCCChHHHHHhccccccccccc-cccHHHHHhcC
Q 001041 1095 -----------------------YDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIAYG 1142 (1178)
Q Consensus 1095 -----------------------y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~~g 1142 (1178)
+.+.+|.+++||.+++.-++..++..+++.||+..++ .|+|.+|+...
T Consensus 75 ~~~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~ 146 (322)
T 1e69_A 75 AGSAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS 146 (322)
T ss_dssp CSEEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-
T ss_pred CceEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc
Confidence 3455679999999986666777777899999998766 99999999765
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.48 E-value=7e-08 Score=104.80 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=42.9
Q ss_pred HHHHHHHHhc--cCCCEEEEeCCCCCC--CHHhHHHHHHHHHHHh--cCCeEEEEecCcch--------h-hccCEEEEE
Q 001041 529 QRIAIARAIL--KDPRILLLDEATSAL--DAESEKVVQEALDRIM--VNRTTVIVAHRLST--------V-RNADMIAVI 593 (1178)
Q Consensus 529 qri~lARal~--~~~~illlDe~ts~l--D~~~~~~i~~~i~~~~--~~~t~i~itH~~~~--------~-~~~d~i~~l 593 (1178)
+....++.++ .+|+++++|++++-+ |+...+.+...+.+.. .++|+++++|.... + ..||.|+.|
T Consensus 115 ~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L 194 (247)
T 2dr3_A 115 EFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRL 194 (247)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEE
Confidence 3344444444 479999999999887 5533333333343332 47899999997654 2 458999999
Q ss_pred eC
Q 001041 594 HR 595 (1178)
Q Consensus 594 ~~ 595 (1178)
+.
T Consensus 195 ~~ 196 (247)
T 2dr3_A 195 DL 196 (247)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.3e-09 Score=111.88 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=50.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHH------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQ------ 456 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~------ 456 (1178)
.++++|++..|. . ++++.+ ++++|+||||||||||+++|.|++.|++|+|.++|.++...+..
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 477888765442 1 456666 89999999999999999999999999999999999887443321
Q ss_pred --HHhcceEEEcCC
Q 001041 457 --WIRKKIGLVSQE 468 (1178)
Q Consensus 457 --~~r~~i~~v~Q~ 468 (1178)
..+..++|++|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 235678999883
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=9.5e-09 Score=121.55 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=92.3
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHh
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIA 481 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~ 481 (1178)
-+++++.++..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+. +-|++.. +|.+|.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd~- 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTDM- 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCSH-
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecCH-
Confidence 4778889999999999999999999999876 5666778888888777654433322 1233321 110111
Q ss_pred cCCCCCCHHHHHHHHH-----HhcHHHHHHhCCCCccchhcCC---CCCCChHHHHHH----------HHHHHhccCCC-
Q 001041 482 YGKDDATTEEIRVATE-----LANAAKFIDKLPQGIDTLVGEH---GTQLSGGQKQRI----------AIARAILKDPR- 542 (1178)
Q Consensus 482 ~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~g~~t~~~~~---g~~lSgGqkqri----------~lARal~~~~~- 542 (1178)
++...+++ +..-.+.+... |....-+-+ ...+||||+||. ++|+++...|.
T Consensus 230 --------~~a~~~L~~~~~EmerR~~ll~~~--Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~i 299 (512)
T 2ius_A 230 --------KDAANALRWCVNEMERRYKLMSAL--GVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYI 299 (512)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEE
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcE
Confidence 11111111 10011122221 222111100 113678887752 46677778898
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHH----h-cCCeEEEEecCcc
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRI----M-VNRTTVIVAHRLS 582 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~----~-~~~t~i~itH~~~ 582 (1178)
++++||+++.+|.. .+.+.+.+..+ . .|.++|++|||++
T Consensus 300 vlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 300 VVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 88999999988743 23344444332 1 2679999999988
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.47 E-value=4e-08 Score=103.65 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=52.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc-----------cccccc
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-----------VLFNDT 1134 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp-----------~LF~gT 1134 (1178)
++|++|+.++|+|++||||||++++|.+++.|+.| +.+ +...++.. ...+..+++++|++ .++..+
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDAFEALIKDDQFIEYAE 77 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHHHHHHHHcCCeEEEEe
Confidence 46899999999999999999999999999977655 222 22222211 11122366666654 455666
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHH
Q 001041 1135 IRANIAYGKGGDATEAEIQAASEM 1158 (1178)
Q Consensus 1135 IreNI~~g~~~~asdeei~~Al~~ 1158 (1178)
+++|+ || ...+++.++++.
T Consensus 78 ~~~~~-~g----~~~~~i~~~l~~ 96 (207)
T 2j41_A 78 YVGNY-YG----TPVQYVKDTMDE 96 (207)
T ss_dssp ETTEE-EE----EEHHHHHHHHHT
T ss_pred ECCee-cC----CCHHHHHHHHHc
Confidence 66663 54 235667766653
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-08 Score=110.61 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=56.2
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHHhccccccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~ 1129 (1178)
++|+++++.+++|+.++|+||+|||||||++.|++...|++| .|.+.+.+ .+...+++++..+.|+..
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~ 91 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVR 91 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCC
Confidence 379999999999999999999999999999999999999888 78665443 356677777666665543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.6e-08 Score=103.76 Aligned_cols=141 Identities=21% Similarity=0.222 Sum_probs=74.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC-----------CCCcEEECCeecCC--CCHHHHhcceEEEcCCCCCCcc--cHHH
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDP-----------QAGEVLIDGINLKE--FQLQWIRKKIGLVSQEPVLFTG--SIKD 478 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~-----------~~G~i~i~g~~~~~--~~~~~~r~~i~~v~Q~~~l~~~--ti~~ 478 (1178)
+++|+|++|||||||++.+.|...+ ..|+|.++|.++.- .+....++..++++|...-..+ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7899999999999999999997654 46889999865421 1111111112222221100000 0111
Q ss_pred HHhcCCCCCCHHHHHHHHHHhcHHHHHHh-CCCCcc-chhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHH
Q 001041 479 NIAYGKDDATTEEIRVATELANAAKFIDK-LPQGID-TLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556 (1178)
Q Consensus 479 ni~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~g~~-t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~ 556 (1178)
+ .+.......... .+.+.. -+...- -.++.+ ..|..-..+....||++..+|+++++| ||++|.+
T Consensus 111 ~-------~~~~s~~~~~~~---~~~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~ 177 (191)
T 1oix_A 111 I-------AKHLTYENVERW---LKELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDST 177 (191)
T ss_dssp T-------TCHHHHHTHHHH---HHHHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCT
T ss_pred C-------cCHHHHHHHHHH---HHHHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCC
Confidence 0 111111110000 001111 011100 111221 112222223477899999999999999 9999999
Q ss_pred hHHHHHHHHHH
Q 001041 557 SEKVVQEALDR 567 (1178)
Q Consensus 557 ~~~~i~~~i~~ 567 (1178)
....+.+.+.+
T Consensus 178 ~v~~l~~~l~~ 188 (191)
T 1oix_A 178 NVEAAFQTILT 188 (191)
T ss_dssp THHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 88888777754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.42 E-value=4e-08 Score=101.66 Aligned_cols=74 Identities=24% Similarity=0.383 Sum_probs=61.8
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC-------------CCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYD-------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF 472 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~-------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 472 (1178)
|+...+|++++|+||||||||||++.|++.++ |..|+ ++|++...++.+.+++.+ .|+..++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999886 66787 699998888999888765 6899999
Q ss_pred cccHHHHHhcCCC
Q 001041 473 TGSIKDNIAYGKD 485 (1178)
Q Consensus 473 ~~ti~~ni~~~~~ 485 (1178)
.+++.+|. +|.+
T Consensus 88 ~~~~~~n~-YGt~ 99 (197)
T 3ney_A 88 FGSYQGNM-FGTK 99 (197)
T ss_dssp EEEETTEE-EEEE
T ss_pred hhhhhcee-cccc
Confidence 99999994 7754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-08 Score=105.46 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=54.9
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcC
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYG 1142 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g 1142 (1178)
++-=++++|+.++|+|++||||||++++|.+.++ .+.+|+||+++|++ +|+.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 4445788999999999999999999999999875 47899999999987 677654
Q ss_pred CCCCCCHHHHHHHHHHcCchHHHhh
Q 001041 1143 KGGDATEAEIQAASEMANAHKFICS 1167 (1178)
Q Consensus 1143 ~~~~asdeei~~Al~~A~~~dfI~~ 1167 (1178)
.. ...+.++.++++.+.+.++|.+
T Consensus 67 ~~-~~~~~~~~~~~~~~~l~~~i~~ 90 (207)
T 2qt1_A 67 KN-GFLQYDVLEALNMEKMMSAISC 90 (207)
T ss_dssp TT-SCBCCSSGGGBCHHHHHHHHHH
T ss_pred cc-CCChhHHHHHhHHHHHHHHHHH
Confidence 32 2222223333333444444444
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.6e-08 Score=108.80 Aligned_cols=80 Identities=20% Similarity=0.204 Sum_probs=69.7
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc-ccc-cccHH
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP-VLF-NDTIR 1136 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp-~LF-~gTIr 1136 (1178)
.+++++++++++| ++|+||+|||||||+++|.+.+.+ |.|.++|.++.+......+++++.++|++ .++ .-++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999887 79999999998877788889999999996 333 23677
Q ss_pred HHHhcC
Q 001041 1137 ANIAYG 1142 (1178)
Q Consensus 1137 eNI~~g 1142 (1178)
|||...
T Consensus 110 Deid~~ 115 (274)
T 2x8a_A 110 DEVDAL 115 (274)
T ss_dssp ETCTTT
T ss_pred ehhhhh
Confidence 888753
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.1e-08 Score=107.19 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=35.6
Q ss_pred cEEEeee-EEeCCCCCCccccccceEEeeC---CCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1042 EIELHHV-SFKYPSRPDVQVFRDLNLKIRA---GKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1042 ~I~f~nV-sf~Y~~~~~~~vL~~isf~I~~---Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
-++++|| +|+|.+ +.++|+|+||+|++ |++++|+|++||||||++++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999843
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-07 Score=98.55 Aligned_cols=70 Identities=17% Similarity=0.100 Sum_probs=52.6
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH-HHHhccccccccccccc-cHHHHHh
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW-LRQQMGLVSQEPVLFND-TIRANIA 1140 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~-LR~~IsiV~Qdp~LF~g-TIreNI~ 1140 (1178)
.++.++|+.++|+|++||||||++++|.+.+ |.+.+||.++.. ... .+..+++++|++.++.. ++.+|+.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 94 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDEDRWPWLRSLAEWM 94 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcccccHHHHHHHHH
Confidence 4677899999999999999999999999987 999999998853 222 33468999999876643 5666653
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.8e-08 Score=104.43 Aligned_cols=52 Identities=29% Similarity=0.424 Sum_probs=47.5
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE--EECCcccCC
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI--TLDGVEIQK 1111 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I--~IDG~dI~~ 1111 (1178)
.+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.+++.
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 46788999999999999999999999999999999997 78998 999998864
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.35 E-value=3.4e-07 Score=108.76 Aligned_cols=177 Identities=11% Similarity=0.160 Sum_probs=106.6
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-cEEECCeecCCCCHHHHhcce-EEEcCCCCCCcccHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVLIDGINLKEFQLQWIRKKI-GLVSQEPVLFTGSIK 477 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~i~g~~~~~~~~~~~r~~i-~~v~Q~~~l~~~ti~ 477 (1178)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+.+. +.+...++.++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCC-------H
Confidence 467787777999999999999999999999999987766445 5655432 23334443332 1111100 0
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc--cCCCEEEEeCCCCCCCH
Q 001041 478 DNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL--KDPRILLLDEATSALDA 555 (1178)
Q Consensus 478 ~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~--~~~~illlDe~ts~lD~ 555 (1178)
+.+.-| ..++++...+.+.. +.+...| -.+.+ ..++|++|.+ +.+|++. .+|+++++|+++.-.+.
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 122222 23444433332222 2233222 12222 2478999876 5667665 57999999999998753
Q ss_pred H-----hH---HHHHHHHHHHh--cCCeEEEEec---------C--cc--------hhh-ccCEEEEEeCCEE
Q 001041 556 E-----SE---KVVQEALDRIM--VNRTTVIVAH---------R--LS--------TVR-NADMIAVIHRGKI 598 (1178)
Q Consensus 556 ~-----~~---~~i~~~i~~~~--~~~t~i~itH---------~--~~--------~~~-~~d~i~~l~~G~i 598 (1178)
. .. ..+.+.++.+. .++++|+++| + +. .+. .||.|+.|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 2 11 33444555443 3789999999 1 32 343 4999999987654
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.2e-07 Score=100.21 Aligned_cols=70 Identities=26% Similarity=0.264 Sum_probs=58.6
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEE----------ECCcccCCCChHHHHHhccccccccccccccHHH
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHIT----------LDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I~----------IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1178)
++|+.++|+||||||||||+++|.+.+++ ..+.+. .+|++..-++.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333332 578888888999998876 6899999998888
Q ss_pred HHhcC
Q 001041 1138 NIAYG 1142 (1178)
Q Consensus 1138 NI~~g 1142 (1178)
| .||
T Consensus 83 ~-~yg 86 (208)
T 3tau_A 83 N-YYG 86 (208)
T ss_dssp E-EEE
T ss_pred c-cCC
Confidence 7 466
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-07 Score=117.09 Aligned_cols=135 Identities=15% Similarity=0.131 Sum_probs=96.0
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG 483 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~ 483 (1178)
++.+++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987654 67888 788889999998888899999999988877777777521
Q ss_pred CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHH
Q 001041 484 KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQE 563 (1178)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~ 563 (1178)
|...+ ... ....-. -..+..++++| |+.++|+.+...+..
T Consensus 82 -pG~~~--f~~----------------------------------~~~~~l--~~ad~~ilVvD-~~~g~~~qt~~~~~~ 121 (665)
T 2dy1_A 82 -PGYGD--FVG----------------------------------EIRGAL--EAADAALVAVS-AEAGVQVGTERAWTV 121 (665)
T ss_dssp -CCSGG--GHH----------------------------------HHHHHH--HHCSEEEEEEE-TTTCSCHHHHHHHHH
T ss_pred -CCccc--hHH----------------------------------HHHHHH--hhcCcEEEEEc-CCcccchhHHHHHHH
Confidence 11111 000 000001 12355678888 999999988866544
Q ss_pred HHHHHhcCCeEEEEecCcchh
Q 001041 564 ALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 564 ~i~~~~~~~t~i~itH~~~~~ 584 (1178)
+.. .+..+|++.|+++..
T Consensus 122 ~~~---~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 122 AER---LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHH---TTCCEEEEEECGGGC
T ss_pred HHH---ccCCEEEEecCCchh
Confidence 432 367888888887754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-07 Score=97.04 Aligned_cols=45 Identities=22% Similarity=0.138 Sum_probs=25.0
Q ss_pred eCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1051 KYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1051 ~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+|++++..++++||||++++|+.++|+|++||||||+++.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 576666678999999999999999999999999999999999876
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-07 Score=117.75 Aligned_cols=74 Identities=22% Similarity=0.205 Sum_probs=57.1
Q ss_pred ccEEEee-----eEEeCCCCCCccccccceEEeeC-------CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 001041 1041 GEIELHH-----VSFKYPSRPDVQVFRDLNLKIRA-------GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1178)
Q Consensus 1041 g~I~f~n-----Vsf~Y~~~~~~~vL~~isf~I~~-------Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~d 1108 (1178)
+.|+++| |++.|++ +.+|++|++|++++ |+.++|+||+||||||+++.+ ++..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999952 34699999999988 999999999999999999999 99863
Q ss_pred cCCCChHHHHHhcc-ccccccccccccHHHHH
Q 001041 1109 IQKLQLKWLRQQMG-LVSQEPVLFNDTIRANI 1139 (1178)
Q Consensus 1109 I~~i~l~~LR~~Is-iV~Qdp~LF~gTIreNI 1139 (1178)
+.+++ +|||++. .-|+.|||
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I 835 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRV 835 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBE
T ss_pred ---------HhheeEEeccCcC--CCCHHHHH
Confidence 45677 9999984 55677776
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.2e-07 Score=97.38 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=40.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
+++|+||+|||||||+++|++++. |.++|.+..+......++++++++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 689999999999999999999995 778898876554335688999999987
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=8.1e-08 Score=98.99 Aligned_cols=71 Identities=21% Similarity=0.216 Sum_probs=53.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC-CCCcEE----------ECCeecCCCCHHHHhcceEEEcCCCCCCcccHHH
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDP-QAGEVL----------IDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKD 478 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~-~~G~i~----------i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 478 (1178)
.+|++++|+||||||||||++.|.+.+++ ..|.|. ++|++....+.+.++.. +.|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999998863 345443 35666666666666653 56777888888888
Q ss_pred HHhcCC
Q 001041 479 NIAYGK 484 (1178)
Q Consensus 479 ni~~~~ 484 (1178)
| .+|.
T Consensus 80 n-~yg~ 84 (180)
T 1kgd_A 80 A-MYGT 84 (180)
T ss_dssp E-EEEE
T ss_pred c-cccc
Confidence 8 4554
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-07 Score=104.82 Aligned_cols=81 Identities=10% Similarity=0.133 Sum_probs=60.3
Q ss_pred ccccEEEeeeEEeCCCCCCccccc--------------cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCC-CC-eE
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFR--------------DLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPD-AG-HI 1102 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~--------------~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~-~G-~I 1102 (1178)
.+|.|+|+||+|.||. ++.+|+ |+++.|.+||+++|||++|+|||||+++|.|+..-. .+ .+
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~ 207 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL 207 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE
Confidence 4689999999999985 346899 999999999999999999999999999999986321 12 23
Q ss_pred EECCcccCCCChHHHHHhc
Q 001041 1103 TLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1103 ~IDG~dI~~i~l~~LR~~I 1121 (1178)
.+-+++-+.=...++.+.+
T Consensus 208 I~~lIGER~~Ev~~~~~~~ 226 (422)
T 3ice_A 208 MVLLIDERPEEVTEMQRLV 226 (422)
T ss_dssp EEEEESSCHHHHHHHHTTC
T ss_pred EEEEecCChHHHHHHHHHh
Confidence 3445554433333443333
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-07 Score=103.70 Aligned_cols=81 Identities=15% Similarity=0.183 Sum_probs=65.1
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHH-----HHhcccc-ccccc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWL-----RQQMGLV-SQEPV 1129 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l----~~L-----R~~IsiV-~Qdp~ 1129 (1178)
+++++||++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ |..+.++ +|++.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 4578999999999999999999999999999999999999999999999865432 344 6678999 77755
Q ss_pred cccc-cHHHHHh
Q 001041 1130 LFND-TIRANIA 1140 (1178)
Q Consensus 1130 LF~g-TIreNI~ 1140 (1178)
+... ++++|+.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 4433 5677764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-07 Score=95.82 Aligned_cols=61 Identities=21% Similarity=0.131 Sum_probs=49.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccc-cccHHHHHh
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF-NDTIRANIA 1140 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF-~gTIreNI~ 1140 (1178)
|+.++|+|++||||||+++.|.+ |.+|.+.+||.++.+. ..+++++|+...+ ..|+++|+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~ 63 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNIT 63 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHH
Confidence 68899999999999999999987 6789999999887543 2468888877443 558888875
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=2.9e-07 Score=114.76 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=61.2
Q ss_pred cccEEEeeeEEeCCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCCeEEECCcccCCCChHH
Q 001041 1040 KGEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD-PDAGHITLDGVEIQKLQLKW 1116 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~--~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~-p~~G~I~IDG~dI~~i~l~~ 1116 (1178)
.+.|++++. +||-- .+.+|++|+||+ |+.++|+||+||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 457999987 66631 235799999999 99999999999999999999999974 6788753 1 1
Q ss_pred HHHhcccccccccccc-ccHHHHHhcC
Q 001041 1117 LRQQMGLVSQEPVLFN-DTIRANIAYG 1142 (1178)
Q Consensus 1117 LR~~IsiV~Qdp~LF~-gTIreNI~~g 1142 (1178)
.+.++++|+| +|. -|+.||+..|
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~g 635 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAGG 635 (765)
T ss_dssp SEEEECCCSE---EEEECCC------C
T ss_pred hccceeeHHH---hhccCCHHHHHHhc
Confidence 2467899988 565 4899999876
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.4e-08 Score=116.20 Aligned_cols=137 Identities=13% Similarity=0.157 Sum_probs=85.8
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
.+++++++.+++|+.++|+||+|||||||+++|.|.+ +|.+..-. ... +.++..+++++|...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~~---~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LPL---DRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SCT---TTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--ccc---hhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999964 67765411 111 12233478889887542 233
Q ss_pred HhcCCC---CC-CHHHHHHHHHHhcHHHHHHh---------CCCCcc-----chhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 480 IAYGKD---DA-TTEEIRVATELANAAKFIDK---------LPQGID-----TLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 480 i~~~~~---~~-~~~~~~~~~~~~~~~~~i~~---------~~~g~~-----t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
+.+... .. ....+. ....+.+.+.. -|+-++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 332211 00 000000 01112222210 000001 1233455668999999999998889999
Q ss_pred CEEE-EeCCCC
Q 001041 542 RILL-LDEATS 551 (1178)
Q Consensus 542 ~ill-lDe~ts 551 (1178)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999987
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2e-07 Score=100.24 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=52.6
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC------ChHH----HHHhcccccccccccc
Q 001041 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL------QLKW----LRQQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1064 isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i------~l~~----LR~~IsiV~Qdp~LF~ 1132 (1178)
-+.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|+... .+.. .++.+++++|++.+|.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3456689999999999999999999999998 79999999987543 1211 2567999999987764
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=2.9e-07 Score=97.19 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=43.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG 483 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~ 483 (1178)
=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++.+ +|+.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~ 66 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETD 66 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcc
Confidence 3577899999999999999999999999874 38899999988876 566543
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.5e-07 Score=114.81 Aligned_cols=106 Identities=25% Similarity=0.197 Sum_probs=85.1
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhc-
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAY- 1141 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~- 1141 (1178)
|+++++|.+++|||++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++.++++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999988765 78999 89999999999999999999999999999999999852
Q ss_pred -CCCCCCCHHHHHHHHHHcCchHHHhhcccccc
Q 001041 1142 -GKGGDATEAEIQAASEMANAHKFICSLQQVRT 1173 (1178)
Q Consensus 1142 -g~~~~asdeei~~Al~~A~~~dfI~~LP~gld 1173 (1178)
|. .+. ..++..+++.++..-++-...+|++
T Consensus 82 pG~-~~f-~~~~~~~l~~ad~~ilVvD~~~g~~ 112 (665)
T 2dy1_A 82 PGY-GDF-VGEIRGALEAADAALVAVSAEAGVQ 112 (665)
T ss_dssp CCS-GGG-HHHHHHHHHHCSEEEEEEETTTCSC
T ss_pred CCc-cch-HHHHHHHHhhcCcEEEEEcCCcccc
Confidence 31 122 3678888888877655555455544
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.6e-06 Score=100.51 Aligned_cols=114 Identities=21% Similarity=0.289 Sum_probs=73.9
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
..++++++.+++| +.|+||+|+|||||++++.+.... .+-++. ..+.
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~is---------~~~~ 85 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHIS---------GSDF 85 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEEE---------GGGT
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeCC---------HHHH
Confidence 3567778888887 899999999999999999985421 011110 0000
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC--------
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS-------- 551 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts-------- 551 (1178)
+. . .+| .|++++|-.+++|....|.|+++||+-+
T Consensus 86 ~~-------------------------~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 86 VE-------------------------L-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp TT-------------------------C-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred HH-------------------------H-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 00 0 011 2678899999999999999999999943
Q ss_pred --CCCHHhHHHHHHHHHHH-----hcCCeEEEEecCcchh
Q 001041 552 --ALDAESEKVVQEALDRI-----MVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 552 --~lD~~~~~~i~~~i~~~-----~~~~t~i~itH~~~~~ 584 (1178)
+.|.+..+.+.+.+..+ ..+..+|..||+++.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 55655555554444432 1345777889998654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.4e-07 Score=100.73 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=56.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHh---cccCCCCCeEEECCcccCCCChHHHHHhcccccccccccc-ccHHHHHhc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQ---RFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN-DTIRANIAY 1141 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~---R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~-gTIreNI~~ 1141 (1178)
+++.++|+|++||||||++++|. ++..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 47999999999999999999999 999999999999987642 246677788888877654 588888853
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.5e-07 Score=93.70 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=29.9
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHH
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI 568 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~ 568 (1178)
...||++..+|++.++| |||+|......+.+.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 45689999999999999 9999999877777766543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-08 Score=114.15 Aligned_cols=94 Identities=15% Similarity=0.208 Sum_probs=73.6
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCC-------CEEEEEcCCCCCHHHHHHHHhccc----CCCCCeEEECCcccCC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAG-------KTVALVGESGSGKSTVVSLLQRFY----DPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~G-------e~vaIVG~SGSGKSTL~~lL~R~y----~p~~G~I~IDG~dI~~ 1111 (1178)
++.++++..|.+ ..+++++++.|++| +.++|+||+|+|||||++++++.. .+.+|.+..+|.|+..
T Consensus 19 lr~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 445566666742 35899999999987 889999999999999999999998 6788998888887754
Q ss_pred CChHHHHHhccccccccccccccHHHHHh
Q 001041 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1178)
Q Consensus 1112 i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1178)
+.....+..|.+|+|...|+. ++.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 321112457899999888876 8888874
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-06 Score=95.00 Aligned_cols=80 Identities=18% Similarity=0.256 Sum_probs=59.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCC-----CCCeEEECCcccC-CCChHHHHHhccccccccccccccHHHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQR--FYDP-----DAGHITLDGVEIQ-KLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R--~y~p-----~~G~I~IDG~dI~-~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1178)
-|++|+.++|+||+|||||||+..|++ ...| ..|.+++++.+.- .-.+..+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4554 6789999998732 22244566788988875 5678
Q ss_pred HhcCCCCCCCHHHHHHH
Q 001041 1139 IAYGKGGDATEAEIQAA 1155 (1178)
Q Consensus 1139 I~~g~~~~asdeei~~A 1155 (1178)
+.+.. ..+.++..+.
T Consensus 93 ~~~~~--~~~~~~~~~~ 107 (243)
T 1n0w_A 93 VAYAR--AFNTDHQTQL 107 (243)
T ss_dssp EEEEE--CCSHHHHHHH
T ss_pred eEEEe--cCCHHHHHHH
Confidence 76642 2344444433
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-07 Score=112.17 Aligned_cols=90 Identities=29% Similarity=0.316 Sum_probs=64.2
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEE-ECCcccCC-------CC---hHHHHHhccccccccccccc
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HIT-LDGVEIQK-------LQ---LKWLRQQMGLVSQEPVLFND 1133 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~-IDG~dI~~-------i~---l~~LR~~IsiV~Qdp~LF~g 1133 (1178)
..+++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.+ ++ ....++++++|+|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 46889999999999999999999999999999987 785 99988753 12 223567789999983
Q ss_pred cHHHHHhcCCC---CCCCHHHHHHHHHHcC
Q 001041 1134 TIRANIAYGKG---GDATEAEIQAASEMAN 1160 (1178)
Q Consensus 1134 TIreNI~~g~~---~~asdeei~~Al~~A~ 1160 (1178)
+..+|+.+... .....++++++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 34455544311 0123445666666544
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=100.03 Aligned_cols=70 Identities=24% Similarity=0.342 Sum_probs=53.7
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHH--hcccCCCC-----CeEEECCccc-CCCChHHHHHhccccccccccccccHHHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLL--QRFYDPDA-----GHITLDGVEI-QKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL--~R~y~p~~-----G~I~IDG~dI-~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1178)
-|++|+.++|+||+|||||||+..| ....+++. +.|+||+.+. +...+..+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 5899999999999999999999944 45555543 4899999874 33334556678998877 67889
Q ss_pred HhcCC
Q 001041 1139 IAYGK 1143 (1178)
Q Consensus 1139 I~~g~ 1143 (1178)
+.+..
T Consensus 247 i~~~~ 251 (400)
T 3lda_A 247 VAYAR 251 (400)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88764
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.4e-07 Score=98.11 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=36.1
Q ss_pred cEEEEeE-EEECCCCCCCccccceeEEEeC---CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 383 DIELRDV-YFSYPARPNEQIFSGFSISISS---GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 383 ~i~~~~~-~~~y~~~~~~~~l~~i~l~i~~---g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.++++|+ +|+|.+ +.++|+|+||++++ |++++|+|++||||||+.+.|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 35799999999999 9999999999999999999999865
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-06 Score=100.12 Aligned_cols=65 Identities=18% Similarity=0.268 Sum_probs=52.2
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
++|+++|+.+++|+.++|+||+|||||||+++|.+.+ +|.+..- + .+.+.++..++.+||...+|
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~---~~~~~~~~~lg~~~q~~~~l 221 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--N---LPLDRLNFELGVAIDQFLVV 221 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--S---SCTTTHHHHHGGGTTCSCEE
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--e---ccchhHHHHHHHhcchhHHH
Confidence 5899999999999999999999999999999999975 5777651 1 12233455689999998753
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.7e-06 Score=97.90 Aligned_cols=45 Identities=29% Similarity=0.319 Sum_probs=34.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--cCCCCCCcEEECC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIER--FYDPQAGEVLIDG 447 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g--~~~~~~G~i~i~g 447 (1178)
.+|++++++++ .++|||++|||||||+++|.| ++++..|.++-..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 47899999988 999999999999999999999 6677777765433
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.03 E-value=6.1e-07 Score=99.41 Aligned_cols=90 Identities=18% Similarity=0.187 Sum_probs=74.6
Q ss_pred EEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccc
Q 001041 1044 ELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGL 1123 (1178)
Q Consensus 1044 ~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Isi 1123 (1178)
+++++...|. ...+++++++++++| ++|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4567777774 235899999999999 99999999999999999999886 7999999999877777777888999
Q ss_pred cccccc-cc-cccHHHHHh
Q 001041 1124 VSQEPV-LF-NDTIRANIA 1140 (1178)
Q Consensus 1124 V~Qdp~-LF-~gTIreNI~ 1140 (1178)
++|++. .+ .-++.||+.
T Consensus 124 ~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp HHHHHHTSCSEEEEEETHH
T ss_pred HHHHHHhcCCcEEehhhhH
Confidence 999975 33 346778883
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.03 E-value=6.1e-07 Score=92.49 Aligned_cols=99 Identities=16% Similarity=0.143 Sum_probs=65.3
Q ss_pred ccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc--ccCCCChH----HHHHhcccccccc-------
Q 001041 1062 RDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV--EIQKLQLK----WLRQQMGLVSQEP------- 1128 (1178)
Q Consensus 1062 ~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~--dI~~i~l~----~LR~~IsiV~Qdp------- 1128 (1178)
+++++++.+| .++|||+||||||||+.+|..+..+..|...-.+. ++-.-+.. ..+..|.+++|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6889999999 99999999999999999999988887776544332 11111110 2356799999986
Q ss_pred ---ccccccHHHH----HhcCCCCCCCHHHHHHHHHHcCch
Q 001041 1129 ---VLFNDTIRAN----IAYGKGGDATEAEIQAASEMANAH 1162 (1178)
Q Consensus 1129 ---~LF~gTIreN----I~~g~~~~asdeei~~Al~~A~~~ 1162 (1178)
+.+..++..+ +.... ...+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g-~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNG-RRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETT-EEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEECC-eEcCHHHHHHHHHHcCCC
Confidence 3333333221 11111 135678888888877654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-07 Score=111.38 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=90.2
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCC-CC-cccH
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV-LF-TGSI 476 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~-l~-~~ti 476 (1178)
+..++++++.+++| +.|+||+|+|||||+++|.++.. .|.+.++|.++.+......++++..++|++. .. .-.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 35789999999999 99999999999999999999875 6889999988766544444556778888764 22 2355
Q ss_pred HHHHh-cCCCCC-----CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC
Q 001041 477 KDNIA-YGKDDA-----TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT 550 (1178)
Q Consensus 477 ~~ni~-~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~t 550 (1178)
-|+|. ++.... ..++....+ ...+. .|||||+|+..+++|...+|++ |||++
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l-----~~LL~---------------~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTL-----NQLLV---------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHH-----HHHHH---------------HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHH-----HHHHH---------------HhcccccCccEEEEEecCChhh--cCccc
Confidence 67774 222111 112221111 11221 2678899999999999999987 89988
Q ss_pred CC
Q 001041 551 SA 552 (1178)
Q Consensus 551 s~ 552 (1178)
-.
T Consensus 187 lr 188 (499)
T 2dhr_A 187 LR 188 (499)
T ss_dssp SS
T ss_pred cc
Confidence 64
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2e-06 Score=98.45 Aligned_cols=143 Identities=10% Similarity=0.208 Sum_probs=81.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-----------CCCCcEEECCeecCCCCHHHHhcceEEEcCCCCC----CcccHHH
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD-----------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL----FTGSIKD 478 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~-----------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l----~~~ti~~ 478 (1178)
.++|+|++|||||||++.|.|... +..|.|.++|.++. +....|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHH-H
Confidence 499999999999999999999764 56688999886542 22346666665532 22222 2
Q ss_pred HHh------cCCC-CCCHHHHHHHHHHhcHHHHHHhC--CCCccchhcCCCCCCChHHHHHHHHH----HHh-ccCCCEE
Q 001041 479 NIA------YGKD-DATTEEIRVATELANAAKFIDKL--PQGIDTLVGEHGTQLSGGQKQRIAIA----RAI-LKDPRIL 544 (1178)
Q Consensus 479 ni~------~~~~-~~~~~~~~~~~~~~~~~~~i~~~--~~g~~t~~~~~g~~lSgGqkqri~lA----Ral-~~~~~il 544 (1178)
.+. +-.+ ...........+ ...+.+..+ ++----.++.+...+|+|++||+.++ +++ ..++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~--~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQ--SSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHH--HHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHH--HHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 221 1111 011111111111 111222222 11111223445555788899988877 666 444454
Q ss_pred EEeCCCCCCCHHhHHHHHHHHHHHh
Q 001041 545 LLDEATSALDAESEKVVQEALDRIM 569 (1178)
Q Consensus 545 llDe~ts~lD~~~~~~i~~~i~~~~ 569 (1178)
+|+||+|.+....+.+.|.+..
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHHh
Confidence 7999999998888877776643
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=6.6e-07 Score=97.66 Aligned_cols=90 Identities=18% Similarity=0.178 Sum_probs=74.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
.+++++...|. ...+++++++++++| ++|+||+|+|||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45677777774 235899999999999 99999999999999999999886 799999999987777777788899
Q ss_pred ccccccc-cc-cccHHHHH
Q 001041 1123 LVSQEPV-LF-NDTIRANI 1139 (1178)
Q Consensus 1123 iV~Qdp~-LF-~gTIreNI 1139 (1178)
.++|++. .+ .-++.||+
T Consensus 99 ~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HHHHHHTTSSSEEEEEETH
T ss_pred HHHHHHHhcCCeEEEehhh
Confidence 9999874 33 34667777
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-06 Score=90.29 Aligned_cols=45 Identities=16% Similarity=0.083 Sum_probs=25.1
Q ss_pred ECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 392 SYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 392 ~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+|+..+..+.++|+||++++|++++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 455556678999999999999999999999999999999999876
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-06 Score=92.19 Aligned_cols=59 Identities=15% Similarity=0.180 Sum_probs=41.3
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1178)
.++.++|++++|+|++||||||++++|.+.+ |.+.++|.++.... ...+..+++++|++
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-~~~~~~~g~~~~~~ 81 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-NIATMQRGIPLTDE 81 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-HHHHHHTTCCCCHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-HHHHHhcCCCCCCc
Confidence 3566789999999999999999999999987 89999987664211 11122456777653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-06 Score=93.80 Aligned_cols=70 Identities=21% Similarity=0.116 Sum_probs=54.6
Q ss_pred cccccceE-EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1059 QVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1059 ~vL~~isf-~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
+.|+++.. .+++|+.++|+||+|||||||++.|++...+.+|.+.+.+.+...-.+......+++.+|+.
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGG
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHH
Confidence 57999998 89999999999999999999999999988888899988776553222222223567777654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.2e-07 Score=96.28 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=44.0
Q ss_pred CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE--EECCeec
Q 001041 399 EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV--LIDGINL 450 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i--~i~g~~~ 450 (1178)
....+..++..++|++++|+|++||||||++++|.+.+. ..|.+ .+||.++
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 346677888889999999999999999999999999987 67988 8887544
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.7e-06 Score=89.47 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=29.5
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
+++++|++++|+||+||||||+++.|.+.+.|..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999866544
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.92 E-value=3.1e-06 Score=94.99 Aligned_cols=68 Identities=21% Similarity=0.244 Sum_probs=54.9
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCH----HHH-----hcceEEE-cCCC
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL----QWI-----RKKIGLV-SQEP 469 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~----~~~-----r~~i~~v-~Q~~ 469 (1178)
+++++|++++|++++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+..... ..+ +..+.++ +|.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888888999999999999999999999999999999999998888754431 233 5568888 5653
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=5.1e-06 Score=84.86 Aligned_cols=56 Identities=25% Similarity=0.231 Sum_probs=44.3
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH-hcccccccccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-QMGLVSQEPVL 1130 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~-~IsiV~Qdp~L 1130 (1178)
.+|+.++|+|++||||||+++.|.+.+ |.+.+||.++.. ...+++ .+++++|++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~~ 62 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDDR 62 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcccc
Confidence 468999999999999999999999876 899999988763 233433 57777776443
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.88 E-value=9.9e-07 Score=106.04 Aligned_cols=70 Identities=29% Similarity=0.349 Sum_probs=52.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC-cEE-ECCeecCC-------CCHH---HHhcceEEEcCCCCCCccc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAG-EVL-IDGINLKE-------FQLQ---WIRKKIGLVSQEPVLFTGS 475 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G-~i~-i~g~~~~~-------~~~~---~~r~~i~~v~Q~~~l~~~t 475 (1178)
.+++|++++|+|+||||||||+++|.|.+.|.+| +|. +||.++.. ++.. ..++++++++|+. +
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l-----~ 439 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI-----T 439 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----H
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----H
Confidence 5789999999999999999999999999999886 785 89876532 2221 2345678888862 4
Q ss_pred HHHHHhc
Q 001041 476 IKDNIAY 482 (1178)
Q Consensus 476 i~~ni~~ 482 (1178)
..+|+.+
T Consensus 440 ~~~~ivi 446 (552)
T 3cr8_A 440 KNRGIAI 446 (552)
T ss_dssp HTTCEEE
T ss_pred hcCCEEE
Confidence 4555544
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.86 E-value=4e-06 Score=86.28 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=47.2
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCe--ecCCCCHH----HHhcceEEEcCCC
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGI--NLKEFQLQ----WIRKKIGLVSQEP 469 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~--~~~~~~~~----~~r~~i~~v~Q~~ 469 (1178)
+++++.+.+| +++|+||||||||||+.+|.+.+.+..|...-.+. ++-..... ..+..|.++.|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988887765432221 11000000 1245788999986
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.5e-05 Score=90.38 Aligned_cols=59 Identities=20% Similarity=0.209 Sum_probs=42.7
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE-EECCeecCCCCHHHHhcceEEEcCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV-LIDGINLKEFQLQWIRKKIGLVSQEP 469 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i-~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1178)
-+++|+++.|.||+|||||||+..+++.+.+..|.+ ++++.+.. +. ...+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~~-~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--DP-VYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH-HHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--ch-HHHHHcCCchhhh
Confidence 378999999999999999999999999887777765 55553322 11 1334566655543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.6e-06 Score=80.70 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=42.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccCCC
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQKL 1112 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G--~I~IDG~dI~~i 1112 (1178)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++..-
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~ 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH
Confidence 67777 9999999999999999999999999987 58 899999887654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.1e-07 Score=100.89 Aligned_cols=124 Identities=11% Similarity=0.202 Sum_probs=71.7
Q ss_pred ccccceeEEEeCCC------EEEEEcCCCCcHHHHHHHHhccCCC--CCCcEEECCeecCCCCHHHHhcceEEEcCCCCC
Q 001041 400 QIFSGFSISISSGT------TAALVGQSGSGKSTVISLIERFYDP--QAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVL 471 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~------~~~ivG~~GsGKStl~~~l~g~~~~--~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 471 (1178)
..|++++..+.+++ ++||+||||||||||+++|.+++.+ .+| .++++++|.+.
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~-------------------~v~~i~~D~f~ 134 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP-------------------NVEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC-------------------CEEEEEGGGGB
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC-------------------eEEEEeecccc
Confidence 46777777777666 8999999999999999999999874 444 35666666655
Q ss_pred CcccHHHHH----hcCCCC-CCHHHHHHHHHHhcHHHHHHhCCCCc-cchhcCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 001041 472 FTGSIKDNI----AYGKDD-ATTEEIRVATELANAAKFIDKLPQGI-DTLVGEHGTQLSGGQKQRIAIARAILKDPRILL 545 (1178)
Q Consensus 472 ~~~ti~~ni----~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~g~-~t~~~~~g~~lSgGqkqri~lARal~~~~~ill 545 (1178)
.....++.. .+|.|. .+.+... +.+..+..|. ...+- .+|-+..+|+.-+......|+|+|
T Consensus 135 ~~~~~l~~~~~~~~~g~P~~~D~~~l~---------~~L~~L~~g~~~v~~P----~yd~~~~~r~~~~~~~v~~~dIVI 201 (321)
T 3tqc_A 135 YSNAKLEKQGLMKRKGFPESYDMPSLL---------RVLNAIKSGQRNVRIP----VYSHHYYDIVRGQYEIVDQPDIVI 201 (321)
T ss_dssp CCHHHHHHTTCGGGTTSGGGBCHHHHH---------HHHHHHHTTCSSEEEE----EEETTTTEEEEEEEEEECSCSEEE
T ss_pred cchhhhhhHHHHhhccCcccccHHHHH---------HHHHhhhccccccccc----hhhhhccccccCceeeccCCCEEE
Confidence 544333321 123332 2223222 2233333343 11110 122222333332334557899999
Q ss_pred EeCCCCCCCH
Q 001041 546 LDEATSALDA 555 (1178)
Q Consensus 546 lDe~ts~lD~ 555 (1178)
++-+..-.|.
T Consensus 202 vEGi~lL~~~ 211 (321)
T 3tqc_A 202 LEGLNILQTG 211 (321)
T ss_dssp EECTTTTCCC
T ss_pred EEcccccccc
Confidence 9999875544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=5.1e-06 Score=92.41 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=55.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
+.++++++.|... + ++++|+ +|+.++++|++|+||||++..|++++.+..|+|.+.|.|+..-
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~ 139 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP 139 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH
Confidence 6778899999522 1 789998 9999999999999999999999999999999999999998653
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.74 E-value=9.9e-06 Score=84.83 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=40.8
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ 1113 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~ 1113 (1178)
..++|+.+||+|++||||||+++.|.+++.+.+|.|.+.|.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 46789999999999999999999999999988999988777764433
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.7e-05 Score=98.11 Aligned_cols=64 Identities=14% Similarity=0.158 Sum_probs=49.5
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHhHHHHHHHHHHHhcC-CeEEE-EecCcchhh
Q 001041 522 QLSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEALDRIMVN-RTTVI-VAHRLSTVR 585 (1178)
Q Consensus 522 ~lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~i~~~~~~-~t~i~-itH~~~~~~ 585 (1178)
-+|+|+.+|..++++++.+++++|+|||.. ++|.+....+.+.+.....+ +++++ .||+.+.+.
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 468999999999999999999999999997 89987655555555555444 45555 478876654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.70 E-value=7.7e-05 Score=85.52 Aligned_cols=59 Identities=17% Similarity=0.181 Sum_probs=45.6
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEe-CCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecC
Q 001041 521 TQLSGGQKQRIAIARAILKDPRILLLD-EATSALDAESEKVVQEALDRIMVNRTTVIVAHR 580 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal~~~~~illlD-e~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~ 580 (1178)
..+|+|++|++. +.+...++-++++| ++.+++|.+....+.+.+.....++.+|+|.+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK 289 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINK 289 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 458999999886 55555677789999 999999998877777777665557888888843
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.68 E-value=1.1e-05 Score=90.06 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=44.5
Q ss_pred ccccccceEEeeCCC------EEEEEcCCCCCHHHHHHHHhcccC--CCCCeEEECCcccCCCCh
Q 001041 1058 VQVFRDLNLKIRAGK------TVALVGESGSGKSTVVSLLQRFYD--PDAGHITLDGVEIQKLQL 1114 (1178)
Q Consensus 1058 ~~vL~~isf~I~~Ge------~vaIVG~SGSGKSTL~~lL~R~y~--p~~G~I~IDG~dI~~i~l 1114 (1178)
...|++++..+.+++ .+||+|+|||||||+++.|.++++ |++|.+.+-+.|--.++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~ 137 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSN 137 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccch
Confidence 357899999998887 899999999999999999999998 467775544444333333
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.65 E-value=8.5e-06 Score=91.32 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=49.6
Q ss_pred cccEEEEeEEEECCCCCCCcccc--------------ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 381 RGDIELRDVYFSYPARPNEQIFS--------------GFSISISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~--------------~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
.+.+.|+|++|.||.+ +..|+ |+.+.+.+|++++|+|++|||||||++.|.+...
T Consensus 131 ~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 5679999999999853 56888 8999999999999999999999999999999763
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.65 E-value=5.8e-06 Score=87.13 Aligned_cols=29 Identities=31% Similarity=0.350 Sum_probs=27.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
++|++++|+||||||||||++.|.+.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999876
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.5e-05 Score=84.44 Aligned_cols=107 Identities=11% Similarity=0.212 Sum_probs=68.1
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
-|+.+.--+++|+++.|.|++|+|||||+.-++.......+ .+.|++=+
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE------------ 83 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE------------ 83 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC------------
Confidence 45555556899999999999999999999888765433222 34443311
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCC
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALD 554 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD 554 (1178)
.+.+++..-+-.. ...++ ++.... ..||++++||++.|...+.++++++.|+|...+|
T Consensus 84 ------ms~~ql~~Rlls~-----~~~v~--~~~l~~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 84 ------MSAEQLALRALSD-----LTSIN--MHDLES---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp ------SCHHHHHHHHHHH-----HHCCC--HHHHHH---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred ------CCHHHHHHHHHHH-----hhCCC--HHHHhc---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 2333332211110 01111 111111 2699999999999999999999999999865543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=2.9e-05 Score=81.57 Aligned_cols=69 Identities=17% Similarity=0.175 Sum_probs=40.8
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch---hhccCEEEEEe
Q 001041 523 LSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST---VRNADMIAVIH 594 (1178)
Q Consensus 523 lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~---~~~~d~i~~l~ 594 (1178)
.+.|+.+|..+++.++.+|+.+-.+ .+.++|...+.+.+.+... .+.++|+-+|.+.. ...||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 3688999999999998887643332 2334555555555444432 35577777887654 35689999886
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=4e-05 Score=86.57 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=26.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
-+++|+++.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58899999999999999999998888754
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=2e-05 Score=83.49 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=44.4
Q ss_pred cccccceE-EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1059 QVFRDLNL-KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1059 ~vL~~isf-~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
+.|+++.. -+++|+.++|+|++||||||+++.|++ .+..+.+++++.+ ..+.+.+++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHH
Confidence 46777776 799999999999999999999999999 5555677887765 234455544
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=1.2e-05 Score=82.43 Aligned_cols=42 Identities=43% Similarity=0.532 Sum_probs=36.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccCC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQK 1111 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G--~I~IDG~dI~~ 1111 (1178)
++|+.++|+|++||||||++++|.+.+.+ .| .|.+||.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998876 67 78889877754
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.54 E-value=2.3e-05 Score=87.21 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=50.0
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh----HHH--HHhccccccc
Q 001041 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL----KWL--RQQMGLVSQE 1127 (1178)
Q Consensus 1064 isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l----~~L--R~~IsiV~Qd 1127 (1178)
++++.++|+.++|||++||||||++..|++++.+++|+|.+.+.|+..... ..+ +..+.+++|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS 166 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCS
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecC
Confidence 455678899999999999999999999999999999999999988754321 122 2346666663
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.53 E-value=2.7e-05 Score=90.36 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=32.8
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
-++|+|++++|+.|||||++|||||||++.|.+.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 4799999999999999999999999999999998
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.52 E-value=1.4e-05 Score=82.95 Aligned_cols=38 Identities=37% Similarity=0.521 Sum_probs=33.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC-----------CCCeEEECCcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDP-----------DAGHITLDGVEIQ 1110 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p-----------~~G~I~IDG~dI~ 1110 (1178)
+++|||++|||||||++.|.+...+ .+|+|.+||.++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 7999999999999999999998765 5799999997653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=9.6e-06 Score=86.22 Aligned_cols=70 Identities=21% Similarity=0.286 Sum_probs=52.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhc---ccCCCCCeE--------EECCcccCCCC-hHHHHHhccccc------ccccccc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQR---FYDPDAGHI--------TLDGVEIQKLQ-LKWLRQQMGLVS------QEPVLFN 1132 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R---~y~p~~G~I--------~IDG~dI~~i~-l~~LR~~IsiV~------Qdp~LF~ 1132 (1178)
.-.++|+|++||||||+++.|.+ +.-.+.|.+ .-.|+|+.+.. +..+.+++.+++ |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 34899999999999999999984 444566666 34577776653 667777777776 6677888
Q ss_pred ccHHHHHh
Q 001041 1133 DTIRANIA 1140 (1178)
Q Consensus 1133 gTIreNI~ 1140 (1178)
..|.+||+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 78877774
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.49 E-value=3.7e-05 Score=88.11 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=36.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc-ccCCCCCeEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQR-FYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R-~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
..+.|+||+|+||||++++|.+ ++.|+.|.|.++|.++..... -+..+++++|++++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 95 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLE 95 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEE
Confidence 3499999999999999999999 899999999999998765433 278899999998763
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.49 E-value=5.5e-05 Score=89.76 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=72.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
.+++++...|. ++.+++++++++++| +.|+||+|+|||||+++|.+... .|.|.++|.++.+......++++.
T Consensus 41 ~~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~ 113 (499)
T 2dhr_A 41 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 113 (499)
T ss_dssp HHHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHH
T ss_pred HHHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHH
Confidence 34556655563 224899999999999 99999999999999999999875 789999999998877777788888
Q ss_pred ccccccc-cc-cccHHHHHh
Q 001041 1123 LVSQEPV-LF-NDTIRANIA 1140 (1178)
Q Consensus 1123 iV~Qdp~-LF-~gTIreNI~ 1140 (1178)
.++|++. .+ .-.+.|||.
T Consensus 114 ~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 114 DLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp HHTTTSSSSSSCEEEEECGG
T ss_pred HHHHHHHhcCCCEEEEehHH
Confidence 9999874 23 235567773
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=2.9e-05 Score=97.42 Aligned_cols=86 Identities=17% Similarity=0.228 Sum_probs=53.8
Q ss_pred ccEEEeeeEEeCCCC----CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeEEECCcccCCCChH
Q 001041 1041 GEIELHHVSFKYPSR----PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHITLDGVEIQKLQLK 1115 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~----~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I~IDG~dI~~i~l~ 1115 (1178)
+.|++++ .++|-- .+..|++|+||+ ++|+.++|+||+||||||+++++.++.-+ +.| ..+..
T Consensus 576 ~~i~i~~--~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITE--GRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEE--ECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEe--ccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 3577775 455520 134699999999 99999999999999999999999997532 333 12211
Q ss_pred HHHHhcccccccccccc-ccHHHHHhcCC
Q 001041 1116 WLRQQMGLVSQEPVLFN-DTIRANIAYGK 1143 (1178)
Q Consensus 1116 ~LR~~IsiV~Qdp~LF~-gTIreNI~~g~ 1143 (1178)
-+..+++++| +|. -++.||+..+.
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~~ 667 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASGR 667 (800)
T ss_dssp -SEEEECCCCE---EEEEEC---------
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhhh
Confidence 1356788877 454 47889987663
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00014 Score=84.34 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=33.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1178)
++.+++++|++||||||++..|.+.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 578999999999999999999999998887777664444
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.46 E-value=2.3e-05 Score=82.25 Aligned_cols=65 Identities=17% Similarity=0.202 Sum_probs=45.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCC-CCCeE----------EECCcccCCCChHHHHHhcccccccccccccc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDP-DAGHI----------TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDT 1134 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p-~~G~I----------~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gT 1134 (1178)
...+|..++|+|+|||||||+++.|.+.++. ..+.| .+||.|..-++.+.+++.+ .|+.+++.+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~ 83 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDK 83 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHH
Confidence 4578999999999999999999999987742 11222 3578888778887777543 3455554443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.45 E-value=3.3e-05 Score=80.82 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=38.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEF 453 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~ 453 (1178)
..++|++++|+|++||||||+++.|.+.+++.+|.|.+.+.|....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3568999999999999999999999999988889888766554433
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00042 Score=80.25 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=84.0
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH-HhcceEEEcCCCCCCcccHHHHHh
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW-IRKKIGLVSQEPVLFTGSIKDNIA 481 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~-~r~~i~~v~Q~~~l~~~ti~~ni~ 481 (1178)
++++|+ +|++++++|++||||||++..|.+.+.+..|+|.+.+.|+......+ ++.. .-+.|+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~ 155 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVP 155 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-------------cccCCcc
Confidence 567777 89999999999999999999999999999999998877765433222 2110 0011221
Q ss_pred cC--CCCCCHHHHHHHHHHhcHHHHHHhC-CCCccchhcCCCCCC---ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 482 YG--KDDATTEEIRVATELANAAKFIDKL-PQGIDTLVGEHGTQL---SGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 482 ~~--~~~~~~~~~~~~~~~~~~~~~i~~~-~~g~~t~~~~~g~~l---SgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
+. .+..+..++. .+.++.+ ..++|..+=+-+..+ ..-..+...+++++..++-+|++| ++++.|.
T Consensus 156 v~~~~~~~~p~~i~--------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~tgq~a 226 (425)
T 2ffh_A 156 VLEVMDGESPESIR--------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AMTGQEA 226 (425)
T ss_dssp EEECCTTCCHHHHH--------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GGGTTHH
T ss_pred EEecCCCCCHHHHH--------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-ccchHHH
Confidence 10 1112233331 1122222 145665443322223 234667778888886565677777 5555444
Q ss_pred HhHHHHHHHHHHHhcCCeEEEEec
Q 001041 556 ESEKVVQEALDRIMVNRTTVIVAH 579 (1178)
Q Consensus 556 ~~~~~i~~~i~~~~~~~t~i~itH 579 (1178)
.. .+ +.+... -+.+-+++|+
T Consensus 227 v~--~a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 227 LS--VA-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HH--HH-HHHHHH-TCCCEEEEES
T ss_pred HH--HH-HHHHhc-CCceEEEEeC
Confidence 32 11 222222 2346677775
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=4.3e-05 Score=79.69 Aligned_cols=58 Identities=22% Similarity=0.457 Sum_probs=41.2
Q ss_pred EEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----cc----CCCCCeEEECCccc
Q 001041 1049 SFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FY----DPDAGHITLDGVEI 1109 (1178)
Q Consensus 1049 sf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R----~y----~p~~G~I~IDG~dI 1109 (1178)
+|+|++ -.++|+++||+.+++ +|++||++|+|||||++.|.+ -| .++.+.+.++|.++
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 467764 235899999998887 699999999999999999986 22 33567888888654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00074 Score=78.15 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=32.0
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh----cCCeEEEEecCcchh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM----VNRTTVIVAHRLSTV 584 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~----~~~t~i~itH~~~~~ 584 (1178)
.+|.+++|||+... |......+.+.+.... .+.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999876 7776666666664433 256788889987543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=4.9e-05 Score=79.22 Aligned_cols=37 Identities=38% Similarity=0.578 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----CC------CCCeEEECCccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY-----DP------DAGHITLDGVEI 1109 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y-----~p------~~G~I~IDG~dI 1109 (1178)
+++|||++|||||||++.|.+.. .| ..|.|.+||.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 69999999999999999999873 23 367899999765
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.36 E-value=8.1e-05 Score=85.41 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=37.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhc------------ccCCCCCeEEECCc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQR------------FYDPDAGHITLDGV 1107 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R------------~y~p~~G~I~IDG~ 1107 (1178)
++++|.++||||++|+|||||+++|.+ ..+|+.|.|.++|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 567899999999999999999999999 77899999999884
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=7e-05 Score=80.13 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=35.4
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeec
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1178)
.+.++|++++|+|++||||||++++|.|. .|+|.+.+.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 34578999999999999999999999997 78999988764
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=93.07 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=47.5
Q ss_pred ccEEEeeeEEeCCCC--CCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHH--------hcccCCCCCe
Q 001041 1041 GEIELHHVSFKYPSR--PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL--------QRFYDPDAGH 1101 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~--~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL--------~R~y~p~~G~ 1101 (1178)
+.|++++...-+-.. .+..|++|++|++++|+.++|+||+||||||+++.+ .|.+-|.++.
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~ 700 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESA 700 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEE
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccc
Confidence 458888754333111 134699999999999999999999999999999999 7877776543
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=2.8e-05 Score=81.32 Aligned_cols=69 Identities=20% Similarity=0.391 Sum_probs=41.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc------ccCCCCCeEEECCc--ccCCCCh--------HHHHHhccccccccccccccHH
Q 001041 1073 TVALVGESGSGKSTVVSLLQR------FYDPDAGHITLDGV--EIQKLQL--------KWLRQQMGLVSQEPVLFNDTIR 1136 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R------~y~p~~G~I~IDG~--dI~~i~l--------~~LR~~IsiV~Qdp~LF~gTIr 1136 (1178)
.++|+|++||||||++++|.+ +.+|..|...++.. |-...+. ..+++....+.|+.+++++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~~~~ 81 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQYYKDLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDRTLL 81 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHHTTCHHHHHHHHHHHHHHHHHHHHC------CEEEESCTT
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHHHhCccccchhHHHHHHHHHHHHHHHhhccCCEEEEeccc
Confidence 689999999999999999998 45555554433321 1111111 1123334567788899999998
Q ss_pred HHHhc
Q 001041 1137 ANIAY 1141 (1178)
Q Consensus 1137 eNI~~ 1141 (1178)
+|+.|
T Consensus 82 ~~~~~ 86 (205)
T 2jaq_A 82 EDPIF 86 (205)
T ss_dssp THHHH
T ss_pred hhHHH
Confidence 88765
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=5.3e-05 Score=87.00 Aligned_cols=44 Identities=27% Similarity=0.387 Sum_probs=35.0
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCCCCCeEEEC
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR--FYDPDAGHITLD 1105 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R--~y~p~~G~I~ID 1105 (1178)
.+|++++++++ .|++||++|||||||++.|.+ |.++.+|.+.-.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 48999999999 999999999999999999999 777777766533
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.27 E-value=4.7e-05 Score=86.61 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=46.9
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 48999999999999999999999999999999999998888888877666543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=4.6e-05 Score=78.10 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=33.7
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~ 1101 (1178)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 5778899999999999999999999999999877773
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=9.3e-05 Score=82.11 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=38.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQ 1113 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~ 1113 (1178)
++|+.+++||++||||||++..|.+.+.+++| +|.+-+.|.....
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~ 148 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIA 148 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccch
Confidence 57999999999999999999999999998788 7887777765433
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00011 Score=86.84 Aligned_cols=61 Identities=23% Similarity=0.302 Sum_probs=40.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc------------CCCCCeEEECCcccCCCChHHHHHhcccccccccccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFY------------DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFN 1132 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y------------~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~ 1132 (1178)
-++||||++|+|||||++.|.+.. ++.+|.+.+||.++.-++..-+|+..++.+|+...|.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~ 253 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS 253 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH
Confidence 479999999999999999999874 3778999999998766666666776677777666553
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0001 Score=75.05 Aligned_cols=38 Identities=34% Similarity=0.403 Sum_probs=32.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLK 451 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~ 451 (1178)
.+|++++|+|++||||||+++.|.+.+ |.+.+|+.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 468999999999999999999999875 88888875543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.23 E-value=6.7e-05 Score=90.83 Aligned_cols=82 Identities=18% Similarity=0.238 Sum_probs=52.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
+-.++|..+|. +..+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|..-..--....|+.++
T Consensus 84 ~G~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 84 HGLEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp SSCHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------------
T ss_pred ccHHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhc
Confidence 33566766663 235789999999 89999999999999999999999999999999999885432222233445666
Q ss_pred cccccc
Q 001041 1123 LVSQEP 1128 (1178)
Q Consensus 1123 iV~Qdp 1128 (1178)
.++|..
T Consensus 160 ~~~~~~ 165 (543)
T 3m6a_A 160 AMPGRI 165 (543)
T ss_dssp ----CH
T ss_pred cCchHH
Confidence 666543
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.22 E-value=4.9e-05 Score=79.40 Aligned_cols=74 Identities=27% Similarity=0.336 Sum_probs=46.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC-CCC-h--HHHHHhccccccccccccccHHHHHhcCCCCCC
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ-KLQ-L--KWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDA 1147 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~-~i~-l--~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~a 1147 (1178)
..|+|+|++||||||+.++|.+. |...||.-++. +.. - ..+++.+ |+.+. +|++ +|..++.. ..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~~~~~~~~~~~~i~~~~----~~~~~-~g~i-~~~~l~~~-~~ 76 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDALAARARENKEEELKRLF----PEAVV-GGRL-DRRALARL-VF 76 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHHHHHHHHHTHHHHHHHC----GGGEE-TTEE-CHHHHHHH-HT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHHHHHhcCChHHHHHHHH----HHHHh-CCCc-CHHHHHHH-Hh
Confidence 47999999999999999999996 77888765542 111 0 2333332 56555 7777 55544321 23
Q ss_pred CHHHHHHHHH
Q 001041 1148 TEAEIQAASE 1157 (1178)
Q Consensus 1148 sdeei~~Al~ 1157 (1178)
++++.++.++
T Consensus 77 ~~~~~~~~l~ 86 (203)
T 1uf9_A 77 SDPERLKALE 86 (203)
T ss_dssp TSHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 4555555554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=5.8e-05 Score=79.56 Aligned_cols=45 Identities=38% Similarity=0.421 Sum_probs=40.4
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC--eEEECCcccC
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG--HITLDGVEIQ 1110 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G--~I~IDG~dI~ 1110 (1178)
+.+++|..+.|+|++||||||+++.|.+.+.|..| .+.+||.+++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 55788999999999999999999999999988889 8999986664
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.19 E-value=8.2e-05 Score=91.54 Aligned_cols=65 Identities=15% Similarity=0.199 Sum_probs=55.6
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCC-CeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDA-GHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~-G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
.+++++++.+++|+.+.|+||+|+|||||+++|.++..+.. |.+.+++.+..... ..++++||..
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g~ 113 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPACQ 113 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETTH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecch
Confidence 58999999999999999999999999999999999999887 88999988776543 3466666543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00021 Score=76.23 Aligned_cols=44 Identities=20% Similarity=0.276 Sum_probs=32.8
Q ss_pred cccceEEee---CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1061 FRDLNLKIR---AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1061 L~~isf~I~---~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
|.++|++.+ +|..++|.|++||||||+++.|...+.+ .+.+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 666666665 8999999999999999999999999988 6777644
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00013 Score=83.21 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=37.5
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
+++.+|+|+|++|||||||++.|.+.+.+.+|+|.|.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 46789999999999999999999999999999999888876543
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0001 Score=84.03 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.2
Q ss_pred CccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 399 EQIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 399 ~~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
..+++.++..++.|+. +.++||+|+||||+++++.+.+.+..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 3588889999999998 9999999999999999999987665543
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00011 Score=88.63 Aligned_cols=71 Identities=27% Similarity=0.412 Sum_probs=54.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc----------------------c-C---------------CCCCe
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF----------------------Y-D---------------PDAGH 1101 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~----------------------y-~---------------p~~G~ 1101 (1178)
.+++++|++.+| ..+|||++|||||||+.+|.-+ + + ..++.
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~ 128 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCE
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcE
Confidence 478899999999 9999999999999999999444 4 2 23678
Q ss_pred EEECCcccCCCChHHHHHh-ccccccccccc
Q 001041 1102 ITLDGVEIQKLQLKWLRQQ-MGLVSQEPVLF 1131 (1178)
Q Consensus 1102 I~IDG~dI~~i~l~~LR~~-IsiV~Qdp~LF 1131 (1178)
++|||.+++.-.+.++-.. +.+++|+-.++
T Consensus 129 ~~ing~~v~~~~l~~~~~~li~i~~q~~~~~ 159 (517)
T 4ad8_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVS 159 (517)
T ss_dssp EESSSSBCCHHHHHHHHTTTEEEESGGGGGT
T ss_pred EEECCEECCHHHHHHHhhhheEEeCCchHHh
Confidence 9999998865445555444 57889986554
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00024 Score=73.31 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=30.2
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----ccC----CCCCeEEECCccc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FYD----PDAGHITLDGVEI 1109 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R----~y~----p~~G~I~IDG~dI 1109 (1178)
+|++++++.++. +|++||++|+|||||++.+.+ -|. ++.+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 789999998887 899999999999999999987 233 3456788888544
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00023 Score=72.10 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=29.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~d 1108 (1178)
.|+.++|+|++||||||++++|.+.+.+ +.+|+-+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~d~ 37 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDSDQ 37 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEeccH
Confidence 4788999999999999999999998754 6777543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00016 Score=91.60 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=41.2
Q ss_pred ccEEEeeeEEeCC------CCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1041 GEIELHHVSFKYP------SRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~------~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
+.|++++ .++| ...+..|++||||++++|+.++|+||+||||||+++.+..
T Consensus 639 ~~i~i~~--~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 639 RKIVIKN--GRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEEE--ECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CcEEEEe--ccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 3577776 4454 1123579999999999999999999999999999999864
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00038 Score=79.07 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=25.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988875
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00031 Score=71.21 Aligned_cols=41 Identities=27% Similarity=0.453 Sum_probs=31.5
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCC------------CCCeEEECCccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDP------------DAGHITLDGVEI 1109 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p------------~~G~I~IDG~dI 1109 (1178)
++|.+|+|||++|+|||||++.|.+...+ ..+.+.+||.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 47899999999999999999999985421 236788888644
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0039 Score=66.75 Aligned_cols=28 Identities=32% Similarity=0.332 Sum_probs=23.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
+++|+|++|+|||||++.|+|.-.+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999997665544
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00045 Score=77.51 Aligned_cols=108 Identities=9% Similarity=0.112 Sum_probs=64.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHH
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDN 479 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 479 (1178)
+.|+++.--+++|+++.|.|++|+|||||+.-++...-. .| ..+.|++=+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE----------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE----------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS-----------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC-----------
Confidence 356666656899999999999999999999877753211 11 134444322
Q ss_pred HhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCC
Q 001041 480 IAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552 (1178)
Q Consensus 480 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~ 552 (1178)
.+.+++..-+... ...++ .+... .+-..||++++||+.-|...+.++++++.|+|...
T Consensus 106 -------~s~~~l~~R~~~~-----~~~i~--~~~l~-~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 -------MGKKENIKRLIVT-----AGSIN--AQKIK-AARRDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp -------SCHHHHHHHHHHH-----HTTCC--HHHHH-SCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred -------CCHHHHHHHHHHH-----HcCCC--HHHHh-cCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 2223222111110 00010 01111 00012889999999999988888999999988643
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0003 Score=81.52 Aligned_cols=65 Identities=23% Similarity=0.202 Sum_probs=54.5
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL 1114 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l 1114 (1178)
+..++++..|... . ++++|+ +|+.++++|++||||||++..|.+.+.+..|+|.+.+.|+.....
T Consensus 77 ~v~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa 141 (425)
T 2ffh_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA 141 (425)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHH
T ss_pred HHHHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchh
Confidence 5566777888532 1 678888 899999999999999999999999999999999999988866443
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0025 Score=70.82 Aligned_cols=32 Identities=31% Similarity=0.405 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEeCCCCCCCH
Q 001041 524 SGGQKQRIAIARAILKDPRILLLDEATSALDA 555 (1178)
Q Consensus 524 SgGqkqri~lARal~~~~~illlDe~ts~lD~ 555 (1178)
+++++.|..+++|...+|.++++||+.+-.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 35777788888888889999999999887664
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00016 Score=78.06 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=45.5
Q ss_pred ccccc-eEEeeCCCEEEEEcCCCCCHHHHHH-HHhcccCCCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1060 VFRDL-NLKIRAGKTVALVGESGSGKSTVVS-LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1060 vL~~i-sf~I~~Ge~vaIVG~SGSGKSTL~~-lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
.|+.+ .--+++|+.++|+|++||||||++. ++....+...+.+++++.+- .-.+....+++++.+|+.
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTCCCHHH
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCCCHHHH
Confidence 46666 5679999999999999999999955 44555555555666665432 112222334578888764
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00044 Score=81.37 Aligned_cols=50 Identities=20% Similarity=0.373 Sum_probs=39.2
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G 1100 (1178)
.|+++|+ .+|.+ . . ++++.+|+.++|+||+|||||||+.+|.++..|.++
T Consensus 6 ~l~~~~~-~~~~~---~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 6 GLELSNF-KSYRG---V---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEEEESC-SSCCS---E---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred EEEEeCE-EEECC---c---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 4889998 68842 1 1 355788999999999999999999999999888653
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00033 Score=79.30 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=50.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE-EECCcccCCCChHHHHHhccccccccccc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-TLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I-~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
=+++|+.+.|.||+|||||||+..+++...+..|.+ +||+.+..+ ....+++++.+|+..+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~---~~ra~rlgv~~~~l~i~ 119 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALD---PVYAKNLGVDLKSLLIS 119 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCC---HHHHHHHTCCGGGCEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccc---hHHHHHcCCchhhhhhh
Confidence 389999999999999999999999999988877864 788765432 23567899998887654
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00015 Score=87.71 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=41.7
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
.+++++++++ +|+.++++||+|||||||+++|.+.+.+..|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 4677888888 8999999999999999999999999988888887766
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00051 Score=78.03 Aligned_cols=33 Identities=21% Similarity=0.369 Sum_probs=31.3
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
.+++++|++++| .++||||+|||||||+.+|..
T Consensus 16 ~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 16 NLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 578999999999 999999999999999999985
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00015 Score=82.45 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=42.0
Q ss_pred ccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 400 QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
.+++++++.+++|.+++|+|++|+|||||++.|++.+.+.+|+|.+-+
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~ 91 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIA 91 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 478889999999999999999999999999999999888777665533
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0012 Score=77.57 Aligned_cols=44 Identities=16% Similarity=0.294 Sum_probs=32.9
Q ss_pred cc-CCCEEEEeCCCCCCCH-HhHHHHHHHHHHHh-cCCeEEEEecCc
Q 001041 538 LK-DPRILLLDEATSALDA-ESEKVVQEALDRIM-VNRTTVIVAHRL 581 (1178)
Q Consensus 538 ~~-~~~illlDe~ts~lD~-~~~~~i~~~i~~~~-~~~t~i~itH~~ 581 (1178)
++ ++++|++||+..-.+. .+...+...+.... .++.+|+.||+.
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 34 8999999999887764 46666777776654 457888888874
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00044 Score=70.76 Aligned_cols=74 Identities=26% Similarity=0.447 Sum_probs=54.0
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHh
Q 001041 1074 VALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIA 1140 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~ 1140 (1178)
+.|+||||||||||++.|+.-++ |-.|+ +||+|..=++.+...+.+. ++-+|-.+.+..|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~i~---~g~flE~~~~~g~~- 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGNY- 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHHH---TTCEEEEEEETTEE-
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHHHH---cCCEEEEEEEcCce-
Confidence 68999999999999999875432 33454 6999999999999887664 77787777766654
Q ss_pred cCCCCCCCHHHHHHHHH
Q 001041 1141 YGKGGDATEAEIQAASE 1157 (1178)
Q Consensus 1141 ~g~~~~asdeei~~Al~ 1157 (1178)
|| .+-++|.++++
T Consensus 78 YG----t~~~~v~~~l~ 90 (186)
T 1ex7_A 78 YG----STVASVKQVSK 90 (186)
T ss_dssp EE----EEHHHHHHHHH
T ss_pred ee----eecceeeehhh
Confidence 65 23455555543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00025 Score=72.49 Aligned_cols=38 Identities=37% Similarity=0.455 Sum_probs=31.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--cEEECCe
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDGI 448 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g~ 448 (1178)
++|++++|+|++||||||+++.|.+.+.+ .| .|.+||.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECCh
Confidence 47999999999999999999999998766 56 5556653
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0046 Score=66.98 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=27.8
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
++++++.+++| +.|+||+|+|||||+++|.+.+... -+.+++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~ 78 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISG 78 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeH
Confidence 44445555555 9999999999999999999976421 345554
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00052 Score=76.50 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
++.+++|+|++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999985
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00031 Score=77.82 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=52.4
Q ss_pred EEEeeeEEeCCCCCCcccccc-ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1043 IELHHVSFKYPSRPDVQVFRD-LNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~-isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
+..+++...|... -++ ++|+.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..-
T Consensus 75 ~~~~~l~~~~~~~-----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 75 IVYDELSNLFGGD-----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHHTTCS-----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHHhccc-----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 4456666677422 156 888877 999999999999999999999999998889999988887654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00036 Score=79.48 Aligned_cols=40 Identities=20% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeec
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1178)
++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 5779999999999999999999999888888777655443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00052 Score=80.90 Aligned_cols=56 Identities=29% Similarity=0.346 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC------------CCCCcEEECCeecCCCCHHHHhcceEEEcCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD------------PQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~------------~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1178)
+++|+|++|+|||||++.|+|... +.+|.+.++|.++.-++....++..++.+|..
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~ 249 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTV 249 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhH
Confidence 799999999999999999999753 56788999997654444333343444444443
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00048 Score=73.45 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=31.3
Q ss_pred ccceeEEEe---CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEE
Q 001041 402 FSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLI 445 (1178)
Q Consensus 402 l~~i~l~i~---~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i 445 (1178)
|.+.|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 555566555 8999999999999999999999999887 666543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00061 Score=68.98 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=27.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
.|+.++|+|++||||||+++.|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998743 55553
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00044 Score=78.98 Aligned_cols=50 Identities=24% Similarity=0.475 Sum_probs=37.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC-----------CCCCeEEECCcccCCCChHHHHHhcccccccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD-----------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEP 1128 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~-----------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp 1128 (1178)
+|+|||++|||||||++.|.+... |..|.|.++|.++. +....|++.|.|
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp 241 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIP 241 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCC
Confidence 399999999999999999998765 67799999997652 223355555543
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00015 Score=82.52 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=55.5
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC-CChHHHHHhccccccc
Q 001041 1059 QVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK-LQLKWLRQQMGLVSQE 1127 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~--vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~-i~l~~LR~~IsiV~Qd 1127 (1178)
.+++.++..|+.|+. +.++||+|+||||+++++.+...+..+.+.+.+.+..+ .+.+.+|+.+..++|.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~ 103 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST 103 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhh
Confidence 489999999999998 99999999999999999999988777766555555543 3567788777665554
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00048 Score=79.54 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=26.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~ 440 (1178)
.++..+.|+||+|+|||||++.+.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999876543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0003 Score=73.60 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+..+|.+++|+||+||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356899999999999999999999998774
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0013 Score=70.27 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=69.4
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCC-cccHHHHHhcCCCCC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDA 487 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~~~~~~ 487 (1178)
+..|+.++++|||||||||++..++.......|. ...+.++.|.|... .-++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4578999999999999999887665432111221 12466677777533 345666664221100
Q ss_pred CHHHHHHHHHHhcHHHHHHhCCCCccchh----cCCCCC---CChHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHhHH
Q 001041 488 TTEEIRVATELANAAKFIDKLPQGIDTLV----GEHGTQ---LSGGQKQRIAIARAILKDPRILLLDEATS-ALDAESEK 559 (1178)
Q Consensus 488 ~~~~~~~~~~~~~~~~~i~~~~~g~~t~~----~~~g~~---lSgGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~ 559 (1178)
- ....|+.... ...... -+.|+-.+.. +.-+++-+++++||+-. ++|.....
T Consensus 137 ~------------------~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 137 P------------------GKSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp T------------------TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred c------------------CceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 0 0001111111 101111 2456655553 34688999999999976 46665543
Q ss_pred HHHHHHHHHhcCCeEEE
Q 001041 560 VVQEALDRIMVNRTTVI 576 (1178)
Q Consensus 560 ~i~~~i~~~~~~~t~i~ 576 (1178)
...+.+.....+..+++
T Consensus 197 ~~l~~i~~~~~~~~~il 213 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVL 213 (235)
T ss_dssp HHHHHHHHHCTTSEEEE
T ss_pred HHHHHHHhhCCCCeEEE
Confidence 33333433333433333
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00021 Score=81.71 Aligned_cols=54 Identities=22% Similarity=0.239 Sum_probs=36.5
Q ss_pred ccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe
Q 001041 1039 VKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101 (1178)
Q Consensus 1039 ~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~ 1101 (1178)
..|.|.|+|++..|.. ..++++++|+| +|||++|+|||||++.|++.-.+..|.
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 3577999999998852 35899999977 999999999999999998765444443
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00041 Score=72.12 Aligned_cols=42 Identities=14% Similarity=0.390 Sum_probs=31.4
Q ss_pred EEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 390 YFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 390 ~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|++ ..++++++++..+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 455654 246899999988877 689999999999999999986
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00037 Score=71.62 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=37.0
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE-EECCcccC
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI-TLDGVEIQ 1110 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I-~IDG~dI~ 1110 (1178)
+..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+||-+++
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~ 53 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWAR 53 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHH
Confidence 3456789999999999999999999999988777765 57765553
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0022 Score=66.71 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
.-+.|.||+|+|||||++++.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999999877544
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00073 Score=77.41 Aligned_cols=32 Identities=19% Similarity=0.556 Sum_probs=29.0
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
.++++++++++| .++|+||||||||||+.+|.
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 367889999999 78899999999999999987
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00087 Score=79.31 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=47.6
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhc--ccCCCCCeEEECCcccCCCChHHHH
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQR--FYDPDAGHITLDGVEIQKLQLKWLR 1118 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R--~y~p~~G~I~IDG~dI~~i~l~~LR 1118 (1178)
.+++++.+|..+.|+|.|||||||+++.|.. ++.++.|.+.+.++|.+...+..+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~ 216 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE 216 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc
Confidence 4778889999999999999999999999876 7777779999999998876665553
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00086 Score=68.80 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=26.8
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999999999999876
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0008 Score=72.94 Aligned_cols=48 Identities=23% Similarity=0.403 Sum_probs=39.1
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
+++.+ ..+++..+.|+|++||||||+++.|.+.+. .|.+.+||-+++.
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 44444 567788999999999999999999999875 3678999987754
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00041 Score=73.02 Aligned_cols=41 Identities=32% Similarity=0.323 Sum_probs=35.7
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC--cEEECC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG--EVLIDG 447 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G--~i~i~g 447 (1178)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 44678999999999999999999999999887778 777765
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.01 Score=67.36 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=25.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+++|+++.|.|++|||||||+..++....
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999988876543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0012 Score=72.57 Aligned_cols=30 Identities=33% Similarity=0.380 Sum_probs=27.6
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
-+++|+.++|+||+|||||||+..+++...
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 378999999999999999999999998765
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=75.74 Aligned_cols=41 Identities=22% Similarity=0.418 Sum_probs=35.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRF-----------YDPDAGHITLDGV 1107 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~-----------y~p~~G~I~IDG~ 1107 (1178)
.++.|.++||||++|+|||||++.|.+- .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 7888899988774
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=64.43 Aligned_cols=31 Identities=32% Similarity=0.535 Sum_probs=25.1
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
++..+++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4455566555 999999999999999999873
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.00088 Score=72.76 Aligned_cols=64 Identities=20% Similarity=0.295 Sum_probs=41.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQE 1127 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qd 1127 (1178)
.++++++.+++| +.|+||+|+||||++++|.+..... -+.+++.++.+.-.....+++..++|+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~ 99 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQ 99 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCCCCHHHHHHHHHH
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHHHhhhhhHHHHHHHHHH
Confidence 456666666666 9999999999999999999987643 588999888665433333334444443
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0011 Score=68.95 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~ 1110 (1178)
...++|+|++||||||+++.|.+.+ |...||+-++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~~ 53 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDALH 53 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGGC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcCc
Confidence 4689999999999999999998877 66778776653
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00089 Score=76.29 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=42.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHH
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei 1152 (1178)
++||||++|+|||||+++|.+.. + ++.+++.. |+..|+.+. .++++++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~---~v~~~~l 50 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVV---PLEDERL 50 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEE---ECCCHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeE---ecChHHH
Confidence 58999999999999999999974 3 22222221 677777543 3567788
Q ss_pred HHHHHHcCchH
Q 001041 1153 QAASEMANAHK 1163 (1178)
Q Consensus 1153 ~~Al~~A~~~d 1163 (1178)
..+++.++.++
T Consensus 51 ~~~~~~~~~~~ 61 (368)
T 2dby_A 51 YALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHCBTT
T ss_pred HHHHHHhcccc
Confidence 88888777654
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0056 Score=67.37 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++++.-+.|.||+|+|||||++++.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999999875
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=66.45 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=30.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCC---CCeEEECCccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPD---AGHITLDGVEI 1109 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~---~G~I~IDG~dI 1109 (1178)
..++|+|+|||||||+++.|.+.+.+. -|.|..++.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 579999999999999999999876543 37788887553
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0016 Score=67.03 Aligned_cols=33 Identities=15% Similarity=0.466 Sum_probs=20.9
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++++..++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 788899987776 889999999999999999997
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0042 Score=69.94 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
++..+.|.||+|+|||||++++.+.+...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 35689999999999999999999877543
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0017 Score=69.30 Aligned_cols=28 Identities=18% Similarity=0.114 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
++..+.|+||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999987644
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0018 Score=65.56 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.006 Score=72.18 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCC-CCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATS-ALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts-~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
+.|++....++..+++++++|+.-... .+... ...+.+.+++ .++.+|+|.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECccch
Confidence 358888888999999999777654433 34433 3445555543 478899999887754
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0024 Score=63.92 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
-+++|||++|+|||||++.|.+.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999984
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=63.21 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=23.5
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
+.+++..+| ..+|+||+|||||||+.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 344555555 88999999999999999986
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0014 Score=68.44 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=26.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~d 1108 (1178)
.+||+|++||||||+++.|.++ |...||+-+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~ 34 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV 34 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH
Confidence 5899999999999999999983 677777544
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0062 Score=67.73 Aligned_cols=113 Identities=18% Similarity=0.229 Sum_probs=0.0
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKD 485 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~ 485 (1178)
++.++++..+.|.||+|||||||++++.+... .+-+.+++.
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~------------------------------------- 83 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGP------------------------------------- 83 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHH-------------------------------------
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhH-------------------------------------
Q ss_pred CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCC-------------CC
Q 001041 486 DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEAT-------------SA 552 (1178)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~t-------------s~ 552 (1178)
+=....+|+. .++-+-.+.+|--..|.++++||.- +.
T Consensus 84 ------------------------~l~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~ 133 (301)
T 3cf0_A 84 ------------------------ELLTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG 133 (301)
T ss_dssp ------------------------HHHHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSC
T ss_pred ------------------------HHHhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcch
Q ss_pred CCHHhHHHHHHHHH--HHhcCCeEEEEecCcchhhcc
Q 001041 553 LDAESEKVVQEALD--RIMVNRTTVIVAHRLSTVRNA 587 (1178)
Q Consensus 553 lD~~~~~~i~~~i~--~~~~~~t~i~itH~~~~~~~~ 587 (1178)
........+...+. ....+..+|..||+.+.+..+
T Consensus 134 ~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~a 170 (301)
T 3cf0_A 134 AADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPA 170 (301)
T ss_dssp SCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGG
T ss_pred HHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChH
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0011 Score=75.75 Aligned_cols=43 Identities=12% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcch
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLST 583 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~ 583 (1178)
+++++++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888777788888765545556777776653
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.011 Score=65.94 Aligned_cols=32 Identities=13% Similarity=0.172 Sum_probs=27.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcE
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i 443 (1178)
...+.++||+|+||||++++|.+.+.+.+|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887766644
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.00038 Score=73.92 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.-+++|+||+||||||+.+.|.+.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998543
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0021 Score=65.74 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=29.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc-----------cCCCCCeEEECCcc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRF-----------YDPDAGHITLDGVE 1108 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~-----------y~p~~G~I~IDG~d 1108 (1178)
-+|++||++|+|||||++.|.+- .++..|.+.++|..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 55 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEK 55 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcE
Confidence 37999999999999999999973 23445677777654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0024 Score=65.38 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=26.6
Q ss_pred ceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 404 GFSISISSGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 404 ~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888889999999999999999999999876
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.11 E-value=0.001 Score=73.60 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=38.4
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeec
Q 001041 405 FSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINL 450 (1178)
Q Consensus 405 i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~ 450 (1178)
++++.+ |++++++|++|+||||++..|.+.+.+..|+|.+.+.|.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 677766 999999999999999999999999988888887755544
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.016 Score=56.61 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=25.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
+.+.-+.|.||+|+|||+++++|.......++
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 34567899999999999999999987654433
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0025 Score=65.35 Aligned_cols=36 Identities=28% Similarity=0.412 Sum_probs=31.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
.++|.++.|+|++||||||+++.|.+.+.+..|.+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 457899999999999999999999998877766653
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0029 Score=69.76 Aligned_cols=46 Identities=24% Similarity=0.289 Sum_probs=35.9
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc----ccCCCCCeEEECC
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR----FYDPDAGHITLDG 1106 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R----~y~p~~G~I~IDG 1106 (1178)
++++..+.+ .|.-++|+|+||+||||++..|.+ |..-+...|...|
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREIS 183 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcC
Confidence 677777777 789999999999999999999987 5544545555444
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0033 Score=71.86 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=24.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
.+..|.+++|||++|+|||||+++|.|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3567889999999999999999999986
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0016 Score=72.99 Aligned_cols=37 Identities=38% Similarity=0.509 Sum_probs=34.0
Q ss_pred cccccceEEeeCCCE--EEEEcCCCCCHHHHHHHHhccc
Q 001041 1059 QVFRDLNLKIRAGKT--VALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~--vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+|+++++.+++|+. ++|+|++||||||++++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 488999999999999 9999999999999999998754
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.018 Score=63.41 Aligned_cols=28 Identities=14% Similarity=0.269 Sum_probs=25.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
-+++|..+.|.||+|||||||+..+...
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 5788999999999999999999988754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.77 E-value=0.006 Score=62.33 Aligned_cols=37 Identities=35% Similarity=0.544 Sum_probs=29.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-c----cCCCCC----eEEECCccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR-F----YDPDAG----HITLDGVEI 1109 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R-~----y~p~~G----~I~IDG~dI 1109 (1178)
+|+|||++|+|||||++.+.+ - +.|+.| .+.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 799999999999999975543 3 667777 788888543
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0042 Score=63.41 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+|+|||++|+|||||++.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 79999999999999999999864
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0035 Score=63.43 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=24.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
-..++|+|++|||||||++.|++.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~ 33 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCAR 33 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence 3689999999999999999999986543
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0048 Score=71.47 Aligned_cols=70 Identities=16% Similarity=0.210 Sum_probs=45.9
Q ss_pred eEEeCCCCCCccccccceEEe---eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1048 VSFKYPSRPDVQVFRDLNLKI---RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1048 Vsf~Y~~~~~~~vL~~isf~I---~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
+.+.+... +.||+-|. +.. ..+..++|+|+|||||||+++.|+..+.+..+.|.+- |.. -+...+.+.++
T Consensus 11 ~~~G~~~~-g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~--D~~-~~~~~~~~~~g 83 (392)
T 4ag6_A 11 IVLGKDRD-GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII--DPE-REYKEMCRKLG 83 (392)
T ss_dssp EEEEECTT-SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE--ESS-CCSHHHHHHTT
T ss_pred cEEEEeCC-CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE--eCC-cCHHHHHHHcC
Confidence 34455322 34566665 332 2677899999999999999999998777777888773 321 23444554443
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0049 Score=64.14 Aligned_cols=21 Identities=38% Similarity=0.710 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=95.71 E-value=0.014 Score=61.97 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=30.6
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
.++.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999765 67776666666665433455677778776543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.005 Score=62.95 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+|..++|+|++||||||+++.|.+-+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0068 Score=68.16 Aligned_cols=67 Identities=22% Similarity=0.317 Sum_probs=46.0
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhccc-CC------CCCeEEECCcccCCCChHHH---HHhccccccccccccccHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFY-DP------DAGHITLDGVEIQKLQLKWL---RQQMGLVSQEPVLFNDTIR 1136 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y-~p------~~G~I~IDG~dI~~i~l~~L---R~~IsiV~Qdp~LF~gTIr 1136 (1178)
-+++|+.+.|.|++||||||++..++.-. .+ ..+.++||..+- ++.+.+ .+++++-+++ +.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~~~-------~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDIDN-------VM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCHHH-------HH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCHHH-------Hh
Confidence 58999999999999999999998887643 34 345688887653 233433 3445554432 45
Q ss_pred HHHhcC
Q 001041 1137 ANIAYG 1142 (1178)
Q Consensus 1137 eNI~~g 1142 (1178)
+||.+.
T Consensus 174 ~~l~~~ 179 (324)
T 2z43_A 174 NNIYYI 179 (324)
T ss_dssp HTEEEE
T ss_pred ccEEEE
Confidence 677664
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0078 Score=60.11 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0011 Score=75.62 Aligned_cols=55 Identities=22% Similarity=0.263 Sum_probs=35.6
Q ss_pred cccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 381 RGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 381 ~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
.+.+.++|++..|.. +.++++++|+| +|+|++|+|||||++.|++.-....|.+.
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 456888888877742 35788999876 99999999999999999987555555443
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.0039 Score=64.78 Aligned_cols=32 Identities=38% Similarity=0.501 Sum_probs=26.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
..+++|+|++||||||+.+.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998876 5555654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.004 Score=67.36 Aligned_cols=40 Identities=33% Similarity=0.464 Sum_probs=32.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCee
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGIN 449 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~ 449 (1178)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~ 67 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDS 67 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHH
Confidence 455678999999999999999999998774 3567777743
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.008 Score=67.97 Aligned_cols=36 Identities=28% Similarity=0.526 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhc-----------ccCCCCCeEEECC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQR-----------FYDPDAGHITLDG 1106 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R-----------~y~p~~G~I~IDG 1106 (1178)
|-+++|||++|+|||||++.|.+ -.+|..|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4578888888876
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0087 Score=64.01 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=23.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G 1100 (1178)
+|+|||++|+|||||++.|++-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999986655443
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.00078 Score=70.16 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0072 Score=62.92 Aligned_cols=30 Identities=33% Similarity=0.575 Sum_probs=24.4
Q ss_pred cceeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 403 SGFSISISSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 403 ~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
++.++.+.+| +.+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455566554 99999999999999999886
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.018 Score=67.65 Aligned_cols=105 Identities=15% Similarity=0.150 Sum_probs=63.1
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHH
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNI 480 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 480 (1178)
.|+.+.--+++|+++.|.|++|+|||||+.-++.......|. .+.|++=+
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~------------------~vl~~slE------------ 238 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGV------------------GVGIYSLE------------ 238 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCC------------------CEEEEESS------------
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCC------------------eEEEEECC------------
Confidence 455555458999999999999999999998887654322221 23333321
Q ss_pred hcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCC
Q 001041 481 AYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATS 551 (1178)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts 551 (1178)
.+.+++..-... ... |.+..--.. ..|+..+.+|+.-|-..+.+.++++.|+|..
T Consensus 239 ------~~~~~l~~R~~~-----~~~----~i~~~~l~~-g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~ 293 (444)
T 2q6t_A 239 ------MPAAQLTLRMMC-----SEA----RIDMNRVRL-GQLTDRDFSRLVDVASRLSEAPIYIDDTPDL 293 (444)
T ss_dssp ------SCHHHHHHHHHH-----HHT----TCCTTTCCG-GGCCHHHHHHHHHHHHHHHTSCEEEECCTTC
T ss_pred ------CCHHHHHHHHHH-----HHc----CCCHHHHhC-CCCCHHHHHHHHHHHHHHhcCCEEEECCCCC
Confidence 223332221100 001 111110011 2589999999988877778888998887643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.005 Score=61.69 Aligned_cols=36 Identities=22% Similarity=0.261 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGV 1107 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~---G~I~IDG~ 1107 (1178)
..++|+|++||||||++..|.+.+.... |.|..|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence 3689999999999999999998765432 45665543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.066 Score=61.99 Aligned_cols=29 Identities=31% Similarity=0.613 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
++.+++++|++|+||||++..|...+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45689999999999999999999877543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0071 Score=61.27 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
|..+.|+|+|||||||+++.|..-+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987553
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0022 Score=67.31 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=23.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPD 1098 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~ 1098 (1178)
.|+|+|++||||||+++.|.+.+++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988754
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0067 Score=61.85 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+++++|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999984
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0049 Score=68.52 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
++.+|||||++|+|||||++.|.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999985
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.06 Score=58.04 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+..-+.|.||+|+||||+++++.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568999999999999999999865
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=95.36 E-value=0.011 Score=66.98 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=42.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
-+++|+.+.|.|++|||||||+..++.-.....| .++||...- .+ ....+++++.+|+..++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~--~~-~~~a~~lG~~~~~l~i~ 119 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA--LD-PEYAKKLGVDTDSLLVS 119 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CC-HHHHHHTTCCGGGCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC--cC-HHHHHHcCCCHHHeEEe
Confidence 4789999999999999999998877755443444 456666432 22 22456678777765544
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0069 Score=61.61 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=30.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc----cCCCCC----eEEECCccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRF----YDPDAG----HITLDGVEI 1109 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~----y~p~~G----~I~IDG~dI 1109 (1178)
=+|+|||++|+|||||++.|.+- +.|+.| .+.+++..+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 47999999999999999999875 456677 666666543
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.007 Score=68.61 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=45.5
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhccc-CC------CCCeEEECCcccCCCChHHHH---HhccccccccccccccHH
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFY-DP------DAGHITLDGVEIQKLQLKWLR---QQMGLVSQEPVLFNDTIR 1136 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y-~p------~~G~I~IDG~dI~~i~l~~LR---~~IsiV~Qdp~LF~gTIr 1136 (1178)
-+++|+.+.|+|++||||||++..++.-. .| ..+.++||.... ++.+.++ +++++-++ .+.
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~~-------~~l 188 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDHD-------AVL 188 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCHH-------HHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCHH-------HHH
Confidence 58999999999999999999999888752 22 345678887663 3344443 34444322 345
Q ss_pred HHHhcC
Q 001041 1137 ANIAYG 1142 (1178)
Q Consensus 1137 eNI~~g 1142 (1178)
+|+.+.
T Consensus 189 ~~l~~~ 194 (343)
T 1v5w_A 189 DNVLYA 194 (343)
T ss_dssp HTEEEE
T ss_pred hceeEe
Confidence 677654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.008 Score=61.33 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
++..+.|+|++||||||+.+.|.+-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.0074 Score=60.63 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.++|+|++||||||+++.|...+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987653
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.015 Score=61.06 Aligned_cols=51 Identities=18% Similarity=0.211 Sum_probs=33.6
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCc-----------chhhccCEEEEEe
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRL-----------STVRNADMIAVIH 594 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~-----------~~~~~~d~i~~l~ 594 (1178)
+++++++||.-- ++.+.-..+ ..+.+ .+.++|++-|+. ..+..||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665432233 22333 378899999932 2345699988875
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0092 Score=60.79 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
+++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 6899999999999999999996433
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0029 Score=70.89 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=33.7
Q ss_pred ccccceeEEEeCCCE--EEEEcCCCCcHHHHHHHHhccC
Q 001041 400 QIFSGFSISISSGTT--AALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 400 ~~l~~i~l~i~~g~~--~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+++.+++.+++|+. ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 477888999999999 9999999999999999999865
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0059 Score=70.80 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
++..+++||++||||||++..|.+.+.+..++|.+-+.|+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 578999999999999999999999999998999987777643
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.052 Score=61.76 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++..-+.|+||+|+|||||++++....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999999875
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.012 Score=64.91 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=30.5
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
.|..+.|+|+|||||||+++.|..-++ .|.+.||+-.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEechHh
Confidence 456799999999999999999987553 47788887333
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.01 Score=60.01 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
.|.++.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0091 Score=62.03 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.012 Score=61.99 Aligned_cols=32 Identities=41% Similarity=0.506 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
.+-.|+|+|++||||||+++.|.++ |...||.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 3457999999999999999999872 5556654
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.012 Score=61.12 Aligned_cols=29 Identities=28% Similarity=0.598 Sum_probs=22.9
Q ss_pred cceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1063 DLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1063 ~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
+.+++..+| ..+|+||+|||||||+.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 344555554 88999999999999999874
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=60.49 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
|..+.|+|++||||||+++.|..-+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999988553
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.0093 Score=61.22 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
++|..+.|+|++||||||+++.|..-+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998755
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.012 Score=60.99 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+|..++|+|++||||||+++.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.014 Score=64.40 Aligned_cols=35 Identities=37% Similarity=0.394 Sum_probs=28.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
+|..+.|+|++||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999988663 35677765
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=62.83 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=23.4
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
-++|.+++|+|++||||||+++.|.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999999999999986
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.012 Score=59.12 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 001041 1073 TVALVGESGSGKSTVVSLL 1091 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL 1091 (1178)
.++|+|++||||||+++.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.0056 Score=63.23 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=25.9
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
..++++..|+|+|++||||||+++.|.+.+
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345677899999999999999999998765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.0094 Score=60.56 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
..+..+.|+|++||||||+++.|..-+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998654
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.011 Score=60.21 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.081 Score=60.10 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
-+++|+++.|.|++|||||||+..+....
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37899999999999999999998776544
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.04 Score=57.39 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.|.||+|+||||+++.+...+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999998765
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=94.81 E-value=0.012 Score=60.00 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.|+|||||||+||++.|+...
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998765
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=94.79 E-value=0.11 Score=57.50 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++.-+.|+||+|+|||++++++...+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35578999999999999999888766
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.013 Score=60.48 Aligned_cols=36 Identities=42% Similarity=0.622 Sum_probs=26.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-----CCC------CCeEEECCcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY-----DPD------AGHITLDGVE 1108 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y-----~p~------~G~I~IDG~d 1108 (1178)
+|+|||++|+|||||++.|.+.. .|. .+.+.+||.+
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEE 71 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEE
Confidence 79999999999999999996432 222 3456777753
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.013 Score=60.36 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+++..++|+|++||||||+++.|.+.+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998655
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=94.72 E-value=0.051 Score=60.00 Aligned_cols=25 Identities=28% Similarity=0.272 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
...+.+.||+|+|||+|+++|...+
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468889999999999999999876
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.039 Score=63.32 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
..+..+.|.||+|+|||||++.+.+.+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999998763
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.024 Score=57.68 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|++|+|||||++.+.+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999976665
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.0082 Score=70.92 Aligned_cols=59 Identities=7% Similarity=0.151 Sum_probs=46.2
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHHh
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
+.|+++..-+++|+.+.|.||+|+||||++..+++-.-+..| .+.+-+.+ ++.+.++++
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r 250 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMR 250 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHH
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHH
Confidence 368888888999999999999999999999999988766545 66665543 445555554
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.013 Score=67.67 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1178)
.+..++|+|++||||||+++.+++.+.+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 577899999999999999999998877788888763
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.078 Score=60.46 Aligned_cols=38 Identities=24% Similarity=0.429 Sum_probs=29.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
.+|..+.|.||+|+|||++++.+...+......+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45778999999999999999999988754333344443
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.016 Score=58.07 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+++|+|++||||||+.+.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998765
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.032 Score=55.99 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
++.-+|++||++|+|||||++.|.+
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3456899999999999999999975
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.014 Score=62.91 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.++|+|+||||||||++.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 58999999999999999998654
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.017 Score=60.33 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=24.5
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.++|..|+|+|++||||||+++.|...+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999998753
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.025 Score=63.89 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc-----------cCCCCCCcEEECC
Q 001041 412 GTTAALVGQSGSGKSTVISLIER-----------FYDPQAGEVLIDG 447 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g-----------~~~~~~G~i~i~g 447 (1178)
|-+++|||.+|+|||||++.|.+ -.+|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 46799999999999999999998 2345667666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1178 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-95 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-41 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 9e-92 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-41 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-86 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-36 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-85 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-44 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-82 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-36 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-75 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-50 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 5e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-44 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-17 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-44 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 9e-21 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-43 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-42 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-38 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 7e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-37 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-15 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-36 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 6e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-36 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-16 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-36 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-13 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-16 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-33 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-13 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 2e-31 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-15 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-31 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 4e-17 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-24 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-12 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 2e-16 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 3e-10 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 9e-16 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 3e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-10 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 3e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 4e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 8e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.002 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 302 bits (775), Expect = 3e-95
Identities = 127/246 (51%), Positives = 169/246 (68%), Gaps = 2/246 (0%)
Query: 377 LDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436
++ +G I++ V F Y I ++SI G T A VG SG GKST+I+LI RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 437 DPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVAT 496
D +G++LIDG N+K+F +R +IGLV Q+ +LF+ ++K+NI G+ AT EE+ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
++ANA FI LPQG DT VGE G +LSGGQKQR++IAR L +P IL+LDEATSALD E
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 557 SEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
SE ++QEALD + +RTT+IVAHRLST+ +AD I VI G IVE GTH +L+ +GAY
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYE 247
Query: 617 QLIRLQ 622
L +Q
Sbjct: 248 HLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 150 bits (381), Expect = 2e-41
Identities = 61/135 (45%), Positives = 90/135 (66%), Gaps = 2/135 (1%)
Query: 1036 LEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095
+E +G I++ HVSF+Y + + +D+NL I G+TVA VG SG GKST+++L+ RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1096 DPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAA 1155
D +G I +DG I+ LR Q+GLV Q+ +LF+DT++ NI G+ AT+ E+ A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEA 127
Query: 1156 SEMANAHKFICSLQQ 1170
++MANAH FI +L Q
Sbjct: 128 AKMANAHDFIMNLPQ 142
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 292 bits (750), Expect = 9e-92
Identities = 124/253 (49%), Positives = 176/253 (69%), Gaps = 3/253 (1%)
Query: 371 DTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVIS 430
D +++D GD+E R+V F+YP R ++ I +G T ALVG+SGSGKST+ S
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 431 LIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATT- 489
LI RFYD G +L+DG +L+E+ L +R ++ LVSQ LF ++ +NIAY + + +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 490 EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEA 549
E+I A +A A FI+K+ G+DT++GE+G LSGGQ+QRIAIARA+L+D IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 550 TSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVE 609
TSALD ESE+ +Q ALD + NRT++++AHRLST+ AD I V+ G IVE+GTHS+L+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 610 DPEGAYSQLIRLQ 622
G Y+QL ++Q
Sbjct: 240 QH-GVYAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 149 bits (379), Expect = 3e-41
Identities = 67/141 (47%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
Query: 1030 DESGTILEDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVS 1089
DE +++ G++E +V+F YP R +V R++NLKI AGKTVALVG SGSGKST+ S
Sbjct: 1 DEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIAS 59
Query: 1090 LLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE 1149
L+ RFYD D GHI +DG ++++ L LR Q+ LVSQ LFNDT+ NIAY + + +
Sbjct: 60 LITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR 119
Query: 1150 AEIQAASEMANAHKFICSLQQ 1170
+I+ A+ MA A FI +
Sbjct: 120 EQIEEAARMAYAMDFINKMDN 140
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 277 bits (709), Expect = 4e-86
Identities = 116/240 (48%), Positives = 162/240 (67%), Gaps = 1/240 (0%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
DI R++ F Y + I ++SI G +VG+SGSGKST+ LI+RFY P+ G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
VLIDG +L W+R+++G+V Q+ VL SI DNI+ + E++ A +LA A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
FI +L +G +T+VGE G LSGGQ+QRIAIARA++ +P+IL+ DEATSALD ESE V+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ +I RT +I+AHRLSTV+NAD I V+ +GKIVE+G H +L+ +PE YS L +LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 134 bits (338), Expect = 8e-36
Identities = 45/129 (34%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
+I ++ F+Y + ++NL I+ G+ + +VG SGSGKST+ L+QRFY P+ G
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANA 1161
+ +DG ++ WLR+Q+G+V Q+ VL N +I NI+ + ++ A+++A A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGA 118
Query: 1162 HKFICSLQQ 1170
H FI L++
Sbjct: 119 HDFISELRE 127
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 275 bits (704), Expect = 2e-85
Identities = 99/244 (40%), Positives = 154/244 (63%), Gaps = 4/244 (1%)
Query: 380 IRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQ 439
+ G ++ +DV F+YP RP+ + G + ++ G ALVG +GSGKSTV +L++ Y P
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 440 AGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATEL 498
G++L+DG L +++ +++ +++ V QEP +F S+++NIAYG T EEI A
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ A FI LPQG DT V E G+QLSGGQ+Q +A+ARA+++ P +L+LD+ATSALDA S+
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 559 KVVQEALDRIM--VNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616
V++ L +R+ +++ LS V AD I + G I E GTH +L+E G Y
Sbjct: 188 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYW 246
Query: 617 QLIR 620
+++
Sbjct: 247 AMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 158 bits (401), Expect = 4e-44
Identities = 57/140 (40%), Positives = 83/140 (59%)
Query: 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096
++G ++ VSF YP+RPDV V + L +R G+ ALVG +GSGKSTV +LLQ Y
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1097 PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAAS 1156
P G + LDG + + + ++L +Q+ V QEP +F +++ NIAYG T EI AA+
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1157 EMANAHKFICSLQQVRTSRL 1176
+ AH FI L Q + +
Sbjct: 126 VKSGAHSFISGLPQGYDTEV 145
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 265 bits (679), Expect = 5e-82
Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 4/240 (1%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ R V F+Y +EQI S + A G SG GKST+ SL+ERFY P AGE+
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYG-KDDATTEEIRVATELANAA 502
IDG + L+ R +IG VSQ+ + G+I++N+ YG + D T E++ +LA A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
F++ +P ++T VGE G ++SGGQ+QR+AIARA L++P+IL+LDEAT++LD+ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 563 EALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622
+ALD +M RTT+++AHRLST+ +AD I I +G+I G H++LV Y++ + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 134 bits (339), Expect = 7e-36
Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ HV F Y Q+ RD++ + + +A G SG GKST+ SLL+RFY P AG I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAH 1162
T+DG I + L+ R Q+G VSQ+ + TIR N+ YG GD T+ ++ ++A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1163 KFIC 1166
F+
Sbjct: 120 SFVE 123
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 248 bits (634), Expect = 3e-75
Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 28/300 (9%)
Query: 351 QAAAFKMFETINRKPEIDAYDTKGKILDDIRGDIELRDVYFSYPARPNEQIFSGFSISIS 410
A + F + K + D K ++ +V FS+ + +++I
Sbjct: 9 TAFWEEGFGELLEKVQQSNGDRKHSSDEN--------NVSFSHLCLVGNPVLKNINLNIE 60
Query: 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPV 470
G A+ G +GSGK++++ LI + G + G ++ SQ
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSW 107
Query: 471 LFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQR 530
+ G+IK+NI +G + + + I K + +T++GE G LSGGQ+ R
Sbjct: 108 IMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRAR 166
Query: 531 IAIARAILKDPRILLLDEATSALDAES-EKVVQEALDRIMVNRTTVIVAHRLSTVRNADM 589
I++ARA+ KD + LLD LD + E+V + + ++M N+T ++V ++ +R AD
Sbjct: 167 ISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADK 226
Query: 590 IAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQTIDGQRKSEISMESLRHSS 649
I ++H+G GT S+L S+L+ ++ +E +R+S I E+LR S
Sbjct: 227 ILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFDQFTE-----ERRSSILTETLRRFS 281
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 114 bits (286), Expect = 2e-28
Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 33/179 (18%)
Query: 992 TAIGISQSSSFSSDSNKAKSAAASIFAIIDRESKIDPSDESGTILEDVKGEIELHHVSFK 1051
T I + ++F + F + + + D + E+ +VSF
Sbjct: 1 TGIIMENVTAFWEE----------GFGELLEKVQQSNGDRKHSSDEN--------NVSFS 42
Query: 1052 YPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111
+ V +++NL I G+ +A+ G +GSGK++++ L+ + G I G
Sbjct: 43 HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG----- 97
Query: 1112 LQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170
++ SQ + TI+ NI + G E ++ + + I +
Sbjct: 98 --------RVSFCSQFSWIMPGTIKENIIF--GVSYDEYRYKSVVKACQLQQDITKFAE 146
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 174 bits (442), Expect = 8e-50
Identities = 62/228 (27%), Positives = 109/228 (47%), Gaps = 9/228 (3%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L++V +Y +++I G +++G SGSGKST++++I P GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 443 VLIDGINL----KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATE 497
V ID I + + R KIG V Q+ L + +N+ + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 498 LANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAES 557
A K+ + + QLSGGQ+QR+AIARA+ +P I+L D+ T ALD+++
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 558 EKVVQEALDRI--MVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603
+ + + L ++ +T V+V H ++ R + I + G++ +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 93.7 bits (233), Expect = 5e-22
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
Query: 1043 IELHHVSFKYPSR-PDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +V+ Y + +++NL I+ G+ V+++G SGSGKST+++++ P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1102 ITLDGVEIQKL----QLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
+ +D ++ L K R ++G V Q+ L T N+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELP 107
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 157 bits (399), Expect = 4e-44
Identities = 53/239 (22%), Positives = 102/239 (42%), Gaps = 28/239 (11%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L+DV S S + +G LVG +G+GKST+++ + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEP-VLFTGSIKDNIAYGKDDATTEEIRVATELANAA 502
G L+ + + +SQ+ F + + + D T E+ ++A A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL--NDVAGAL 113
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-------DPRILLLDEATSALDA 555
+D +G QLSGG+ QR+ +A +L+ ++LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 556 ESEKVVQEALDRIMV-NRTTVIVAHRLSTV-RNADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ + + L + V+ +H L+ R+A ++ GK++ G +++ P
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 81.1 bits (200), Expect = 1e-17
Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L V+ L+ ++RAG+ + LVG +G+GKST+++ + G I
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEP-VLFNDTIRANIAYGKGGDATEAEIQAASEM 1158
G ++ L +SQ+ F + + + + +
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGA 112
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 158 bits (400), Expect = 4e-44
Identities = 61/245 (24%), Positives = 118/245 (48%), Gaps = 26/245 (10%)
Query: 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
+++L ++ + N + +++I G L+G SG GK+T + +I +P G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 443 VLIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVA 495
+ + L + I +V Q ++ ++ +NIA+ D + +R A
Sbjct: 63 IYFGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 496 TELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDA 555
EL + +++ P QLSGGQ+QR+A+ARAI+ +P +LL+DE S LDA
Sbjct: 121 AELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169
Query: 556 ESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
+ ++ + ++ + TT+ V H D IAV++RG++++ G+ +++ P
Sbjct: 170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 229
Query: 613 GAYSQ 617
+
Sbjct: 230 SVFVA 234
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 90.6 bits (225), Expect = 9e-21
Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 9/117 (7%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
E++L +++ ++ + LNL I+ G+ + L+G SG GK+T + ++ +P G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 1102 ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQA 1154
I ++ L + + +V Q ++ T+ NIA+ K E + +
Sbjct: 63 IYFGDRDVT--YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV 117
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 156 bits (395), Expect = 3e-43
Identities = 65/258 (25%), Positives = 121/258 (46%), Gaps = 38/258 (14%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ + D++ Y ++ G S+ +G +++G SGSGKST + I P G +
Sbjct: 3 LHVIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 444 LIDGINL-------------KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------ 483
+++G N+ + QL+ +R ++ +V Q L++ ++ +N+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 484 --KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541
K DA ++ ++ + K P LSGGQ+QR++IARA+ +P
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYP-----------VHLSGGQQQRVSIARALAMEP 168
Query: 542 RILLLDEATSALDA-ESEKVVQEALDRIMVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIV 599
+LL DE TSALD +V++ +T V+V H + R+ + + +H+GKI
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 228
Query: 600 EKGTHSKLVEDPEGAYSQ 617
E+G ++ +P+ Q
Sbjct: 229 EEGDPEQVFGNPQSPRLQ 246
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 92.2 bits (229), Expect = 3e-21
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 21/136 (15%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
++ + + +Y +V + ++L+ RAG ++++G SGSGKST + + P G
Sbjct: 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 1102 ITLDGVEIQKL-------------QLKWLRQQMGLVSQEPVLFND-TIRANIAYG----K 1143
I ++G I + QL+ LR ++ +V Q L++ T+ N+
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 1144 GGDATEAEIQAASEMA 1159
G +A +A +A
Sbjct: 119 GLSKHDARERALKYLA 134
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 153 bits (389), Expect = 1e-42
Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 25/248 (10%)
Query: 384 IELRDVYFSYPARPNE-QIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE 442
I+L ++ + Q + S+ + +G ++G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 443 VLIDGIN---LKEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYG------KDDATTEEI 492
VL+DG L E +L R++IG++ Q L + ++ N+A D +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 493 RVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSA 552
L D P LSGGQKQR+AIARA+ +P++LL DEATSA
Sbjct: 122 TELLSLVGLGDKHDSYPS-----------NLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 553 LDAESEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609
LD + + + E L I + T +++ H + V+ D +AVI G+++E+ T S++
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
Query: 610 DPEGAYSQ 617
P+ +Q
Sbjct: 231 HPKTPLAQ 238
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 90.3 bits (224), Expect = 1e-20
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 1043 IELHHVSFKYPSRP-DVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I+L +++ + +Q +++L + AG+ ++G SG+GKST++ + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 1102 ITLDGVEIQKL---QLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQA 1154
+ +DG E+ L +L R+Q+G++ Q L + T+ N+A E + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 1155 A 1155
Sbjct: 122 T 122
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 140 bits (355), Expect = 1e-38
Identities = 46/217 (21%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E+RD+ Y ++ + +++I G G +G GK+T++ I + P GE+
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG----KDDATTEEIRVATEL 498
+ +G+ + ++ KI + +E ++ S++D + EI A E
Sbjct: 59 IYNGVPI-----TKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
KL + LS G +R+ +A +L + I +LD+ A+D +S+
Sbjct: 114 VEVLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 559 KVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595
V +++ I+ + VI++ R + D+ +H+
Sbjct: 162 HKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 86.9 bits (215), Expect = 7e-20
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ +S Y D V + + I G V G +G GK+T++ + + P G I
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAASEM 1158
+GV I K ++ ++ + +E ++ ++ + G + EI A E
Sbjct: 59 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 1159 ANAH 1162
Sbjct: 114 VEVL 117
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 139 bits (352), Expect = 1e-37
Identities = 56/239 (23%), Positives = 104/239 (43%), Gaps = 14/239 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ L DV+ + S+ + G L+G SG GK+T + +I +P G++
Sbjct: 4 VRLVDVWKVFGEV---TAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 444 LIDGINL----KEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELA 499
I + K + + I +V Q L+ + + +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
+ L G+ L+ +LSGGQ+QR+A+ RAI++ P++ L+DE S LDA+
Sbjct: 121 REV--AELL--GLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 560 VVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
++ L ++ + TT+ V H D IAV++RG + + G+ ++ + P +
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 73.0 bits (179), Expect = 8e-15
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ L V + +V R+++L+++ G+ + L+G SG GK+T + ++ +P G I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 1103 TLDGVEIQKLQ----LKWLRQQMGLVSQEPVLF 1131
+ + + + + + +V Q L+
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALY 93
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 135 bits (342), Expect = 2e-36
Identities = 62/249 (24%), Positives = 113/249 (45%), Gaps = 21/249 (8%)
Query: 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAG 441
G + ++D+ + +I G S I G L+G +G+GK+T + +I P +G
Sbjct: 1 GAVVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 442 EVLIDGINLKEFQLQWIRKKIGLVSQEPVL---FTGSIKDNIAYGKDDATTEEIRVATEL 498
V + G N + +RK I + +E G G +++ EI
Sbjct: 58 IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIE----- 111
Query: 499 ANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESE 558
+ + G+ + + + S G +++ IARA++ +PR+ +LDE TS LD +
Sbjct: 112 EMVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 169
Query: 559 KVVQEALDRIMVNRTTVI-VAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP----- 611
+ V++ L + T++ +H + V D IA+IH G IVE GT +L E
Sbjct: 170 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229
Query: 612 EGAYSQLIR 620
E + ++++
Sbjct: 230 EEVFEEVVK 238
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 76.6 bits (188), Expect = 6e-16
Identities = 16/105 (15%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG 1100
G + + + + ++ + ++ +I G+ L+G +G+GK+T + ++ P +G
Sbjct: 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 1101 HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYGKG 1144
+T+ G + + + +R+ + + +E + + + + G
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG 101
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 135 bits (342), Expect = 2e-36
Identities = 59/244 (24%), Positives = 110/244 (45%), Gaps = 26/244 (10%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
++L++V ++ + ++ I G VG SG GKST++ +I +G++
Sbjct: 1 VQLQNVTKAWGEV---VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG------KDDATTEEIRVAT 496
I + + + +G+V Q L+ S+ +N+++G K + + +
Sbjct: 58 FIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 497 ELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAE 556
E+ A +D+ P+ LSGGQ+QR+AI R ++ +P + LLDE S LDA
Sbjct: 116 EVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 164
Query: 557 SEKVVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613
++ + R+ + RT + V H AD I V+ G++ + G +L P
Sbjct: 165 LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224
Query: 614 AYSQ 617
+
Sbjct: 225 RFVA 228
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 76.5 bits (188), Expect = 5e-16
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 6/101 (5%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
++L +V+ + +V V +D+NL I G+ V VG SG GKST++ ++ +G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG 1142
+ + + +G+V Q L+ ++ N+++G
Sbjct: 58 FIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFG 96
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 135 bits (341), Expect = 3e-36
Identities = 55/233 (23%), Positives = 108/233 (46%), Gaps = 12/233 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+E++ ++ Y A G + + G L+G +G+GK+T +S I Q G++
Sbjct: 7 LEVQSLHVYYGAI---HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 444 LIDGINL-KEFQLQWIRKKIGLVSQEPVLF-TGSIKDNIAYGKDDATTEEIRVATELANA 501
+ +G ++ + R I LV + +F ++ +N+ G + +E + +L
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE-GIKRDLEWI 122
Query: 502 AKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVV 561
+L + + L G LSGG++Q +AI RA++ P++L++DE + L V
Sbjct: 123 FSLFPRLKERLKQLGG----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 562 QEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPE 612
E + +I T ++V A V+ G+IV +G S+L+++
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEM 231
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 68.4 bits (167), Expect = 3e-13
Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+E+ + Y + + ++LK+ G+ V L+G +G+GK+T +S + G I
Sbjct: 7 LEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 1103 TLDGVEIQKL-QLKWLRQQMGLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMA 1159
+G +I R + LV + +F + T+ N+ G + I+ E
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI 122
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 134 bits (338), Expect = 9e-36
Identities = 47/240 (19%), Positives = 105/240 (43%), Gaps = 15/240 (6%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
+ ++ + + G SIS++ G ++G +GSGKST+I++I F G V
Sbjct: 5 LRTENIVKYFGEF---KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 444 LIDGINL-KEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYG---KDDATTEEIRVATEL 498
+ ++ + + I Q P ++ +N+ G ++ + +
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 499 ANAAKFIDKLPQ-----GIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSAL 553
+ ++K + + L +LSGGQ + + I RA++ +P+++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 554 DAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDP 611
+ + + T +I+ HRL V N D + V+ G+I+ +G + +++
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 241
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 78.9 bits (194), Expect = 1e-16
Identities = 18/102 (17%), Positives = 44/102 (43%), Gaps = 5/102 (4%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
+ ++ + + + +++ + G ++G +GSGKST+++++ F D G +
Sbjct: 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 1103 TLDGVEIQKLQLKWL-RQQMGLVSQEPVLFND-TIRANIAYG 1142
+ +I + L + Q P + T+ N+ G
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIG 103
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 125 bits (315), Expect = 7e-33
Identities = 74/242 (30%), Positives = 120/242 (49%), Gaps = 16/242 (6%)
Query: 399 EQIFSGFSISIS---SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQL 455
E+ F +++ L+G +G+GKS + LI P GEV ++G ++ L
Sbjct: 8 EKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PL 65
Query: 456 QWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDT 514
R+ IG V Q+ LF S+ NIAYG + E + +KL GI
Sbjct: 66 PPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAH 118
Query: 515 LVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRI--MVNR 572
L+ +LSGG++QR+A+ARA++ PR+LLLDE SA+D +++ V+ E L + +
Sbjct: 119 LLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV 178
Query: 573 TTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQEANKESEQT 631
+ V H L AD +AV+ G+IVEKG +L G ++ + + + +
Sbjct: 179 PILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKI 238
Query: 632 ID 633
+D
Sbjct: 239 LD 240
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.5 bits (167), Expect = 3e-13
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 4/104 (3%)
Query: 1063 DLNLKIRAGK-TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121
LN+ G+ L+G +G+GKS + L+ PD G + L+G +I L R+ +
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGI 72
Query: 1122 GLVSQEPVLFND-TIRANIAYGKGGDATEAEIQAASEMANAHKF 1164
G V Q+ LF ++ NIAYG + EMA
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI 116
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 121 bits (304), Expect = 2e-31
Identities = 65/238 (27%), Positives = 115/238 (48%), Gaps = 18/238 (7%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
IE+ + + S+ + SG ++G +G+GK+ + LI F+ P +G +
Sbjct: 2 IEIESLSRKWK----NFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 444 LIDGINLKEFQLQWIRKKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELANAA 502
L+DG ++ + L + I V Q LF ++K N+ +G ++ + + A
Sbjct: 58 LLDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 503 KFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQ 562
K L + LSGG++QR+A+ARA++ +P+ILLLDE SALD +++ +
Sbjct: 116 KIEHLL--------DRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 563 EALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617
E L + T + + H + R AD IAV+ GK+++ G ++ E P
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVA 225
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 75.1 bits (184), Expect = 1e-15
Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102
IE+ +S K+ + +L+LK+ +G+ ++G +G+GK+ + L+ F+ PD+G I
Sbjct: 2 IEIESLSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 1103 TLDGVEIQKLQLKWLRQQMGLVSQEPVLFND-TIRANIAYG---KGGDATEAEIQAA--- 1155
LDG ++ L + + V Q LF ++ N+ +G K + + A
Sbjct: 58 LLDGKDVTDLS--PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 1156 --SEMANAHKFICSLQQVR 1172
+ + + S + +
Sbjct: 116 KIEHLLDRNPLTLSGGEQQ 134
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 120 bits (303), Expect = 3e-31
Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 13/239 (5%)
Query: 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEV 443
I +++V + + +I+I +G ++G SG+GK+T + +I P GE+
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 444 LIDGINLKEFQLQWIR---KKIGLVSQEPVLFTG-SIKDNIAYGKDDATTEEIRVATELA 499
D + + +KIG+V Q L+ + +NIA+ + + + +
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 500 NAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEK 559
AK +D I ++ +LSG Q+QR+A+ARA++KDP +LLLDE S LDA
Sbjct: 123 EVAKILD-----IHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 560 VVQEALDRI--MVNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615
+ + + + T ++V+H + + AD + V+ +GK+V+ G L ++P
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.1 bits (197), Expect = 4e-17
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH 1101
I + +VS + + V ++N+ I G+ ++G SG+GK+T + ++ P G
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 1102 ITLDGVEIQKLQLKWLR---QQMGLVSQEPVLFND-TIRANIAYG 1142
+ D + + +++G+V Q L+ + T NIA+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP 106
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 98.5 bits (244), Expect = 3e-24
Identities = 19/191 (9%), Positives = 46/191 (24%), Gaps = 29/191 (15%)
Query: 416 ALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGS 475
+ G+ G GK+T++ I +A + + E + + + I ++ + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 476 IKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIAR 535
G V + A
Sbjct: 64 FTSKKLVGSYG-----------------------------VNVQYFEELAIPILERAYRE 94
Query: 536 AILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595
A +++++DE + N V I +
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 596 GKIVEKGTHSK 606
++E ++
Sbjct: 155 AVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 62.7 bits (151), Expect = 9e-12
Identities = 10/69 (14%), Positives = 26/69 (37%)
Query: 1074 VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFND 1133
+ + GE G GK+T+V + A + V + + + + + ++ + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1134 TIRANIAYG 1142
+ G
Sbjct: 63 FFTSKKLVG 71
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 79.9 bits (195), Expect = 2e-16
Identities = 49/322 (15%), Positives = 101/322 (31%), Gaps = 7/322 (2%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
+R KP I A I + I + LLI I+ + I
Sbjct: 3 KRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIA 62
Query: 768 LALGAGSFLL-----SPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAI 822
+ + F++ + Y NK++ IR + + + ++ +
Sbjct: 63 IGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS 122
Query: 823 GARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYT 882
+ + L I + T L I F +L L L + P ++ Y
Sbjct: 123 RVINDVEQTKDF--ILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYV 180
Query: 883 QMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQ 942
++ + + E ++ V I V SF E+ + + KK + ++
Sbjct: 181 FFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240
Query: 943 GMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSF 1002
+ F A + GA L G T + L + + + +
Sbjct: 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVAS 300
Query: 1003 SSDSNKAKSAAASIFAIIDRES 1024
+ ++ ++ +F +ID +
Sbjct: 301 FTTLTQSFASMDRVFQLIDEDY 322
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 60.7 bits (145), Expect = 3e-10
Identities = 43/310 (13%), Positives = 88/310 (28%), Gaps = 4/310 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVS---KVAVKFVYLGIGS 116
+ I I L+ LL I+ +N + + + I
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 117 GIASFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQD 176
F++ T + IR + F+ N + R+ D +D
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVIS-RVINDVEQTKD 133
Query: 177 AMGEKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQ 236
+ + T + I F LTL L P ++ V + K++
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERS 193
Query: 237 GAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVML 296
A A+ + + + I V SF E N+ K ++ +
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 297 IVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFK 356
+ + + G L + G + + + L + A+ +
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 357 MFETINRKPE 366
+F+ I+ +
Sbjct: 314 VFQLIDEDYD 323
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 77.7 bits (189), Expect = 9e-16
Identities = 57/316 (18%), Positives = 121/316 (38%), Gaps = 4/316 (1%)
Query: 708 RRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIY 767
RRL P ++ IA + N L+ +++ F + + L+
Sbjct: 5 RRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGF--GKTDRSVLLWMPLVV 62
Query: 768 LALGAGSFLLSPAQSYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLS 827
+ L + S SY + K++ +R F ++ M V++FD+ +
Sbjct: 63 IGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT-- 120
Query: 828 ADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQLALIILVMLPLIGVSGYTQMKFM 887
D+ V + AL +V+ ++ I+ F SWQL++I++V+ P++ ++ K
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 888 KGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMVSG 947
+ S + + + + A + + V F +E + + K G++ S
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 948 GGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSN 1007
+ A YA + T + VF S+ + ++ ++
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 1008 KAKSAAASIFAIIDRE 1023
+ +A ++FAI+D E
Sbjct: 301 RGMAACQTLFAILDSE 316
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 63.8 bits (153), Expect = 3e-11
Identities = 48/307 (15%), Positives = 114/307 (37%), Gaps = 5/307 (1%)
Query: 60 LMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIA 119
+I+ I I N M L L++ + S + + + + L I GI
Sbjct: 17 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRS----VLLWMPLVVIGLMILRGIT 72
Query: 120 SFLQVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMG 179
S++ C + +R ++ VAFFD ++ + + + G
Sbjct: 73 SYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSG 132
Query: 180 EKVGKFLQLMATFLGGFLIAFIKGWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAY 239
+ + + ++ + W L+++++ P+++++ V++ +S Q
Sbjct: 133 ALITVVREGASIIGLFIMMFYYS-WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 191
Query: 240 AKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEGLAAGIGLGMVMLIVF 299
+ + EQ + + V F G++ + K G++ A+ I ++ LI
Sbjct: 192 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 251
Query: 300 CSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFE 359
+ A ++ + + G + V +++ L + + F G AA +F
Sbjct: 252 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 311
Query: 360 TINRKPE 366
++ + E
Sbjct: 312 ILDSEQE 318
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (118), Expect = 3e-07
Identities = 26/186 (13%), Positives = 54/186 (29%), Gaps = 8/186 (4%)
Query: 417 LVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSI 476
L G G GK+T+I V + I + +S +
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 477 KDNIAYGKDDATTEEIRVATELANAAKFIDK-----LPQGIDTLVGEHGTQLSGGQKQRI 531
+ ++ + + T A + + G V + ++ + I
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIA 591
R L P ++L +V+E +R V V +R + D++
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLP--DIVT 182
Query: 592 VIHRGK 597
+ +
Sbjct: 183 CVQSSR 188
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 4e-04
Identities = 9/70 (12%), Positives = 20/70 (28%)
Query: 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131
+ V L G G GK+T++ + E + + + + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1132 NDTIRANIAY 1141
+
Sbjct: 62 SRVGLEPPPG 71
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 8e-04
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 521 TQLSGGQKQRIAI----ARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVI 576
LSGG+K A+ A + +LDE +ALD + + + + R I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 577 VA-HRLSTVRNADMIAVIHRGKIVEKGTHSKLV 608
V + + +D + ++R ++ SK++
Sbjct: 391 VISLKNTMFEKSDALVGVYR---QQQENSSKII 420
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 38.4 bits (88), Expect = 0.002
Identities = 12/36 (33%), Positives = 14/36 (38%)
Query: 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105
G + L G GSGKST+ L H D
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 38
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1178 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.96 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.96 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.93 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.91 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.91 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.9 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.9 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.9 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.9 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.89 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.88 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.86 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.85 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.85 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.85 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.82 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.8 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.75 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.62 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.13 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.99 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.8 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.66 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.44 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.09 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.08 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.02 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.91 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.79 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.66 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.58 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.57 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.56 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.55 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.54 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.54 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.53 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.39 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.38 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.31 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.29 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.24 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.24 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.19 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.11 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.11 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.08 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.03 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.02 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.01 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.0 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.97 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.91 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.9 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.86 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.86 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.85 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.79 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.78 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.77 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.76 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.75 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.68 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.66 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.63 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.62 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.59 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.58 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.55 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.52 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.5 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.47 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.46 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.45 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.45 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.43 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.42 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.36 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.36 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.36 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.36 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.34 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.31 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.29 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.27 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.21 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.21 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.21 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.14 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.09 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.09 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.09 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.08 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.07 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.05 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.03 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.01 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.99 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.87 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.82 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.79 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.79 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.76 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.73 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.69 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.69 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.68 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.64 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.64 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.63 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.59 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.54 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.54 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.52 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.43 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.42 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.42 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.41 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.41 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.38 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.36 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.35 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.32 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.32 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.28 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.26 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.22 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.2 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.19 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.19 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.17 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.13 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.05 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.04 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.04 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.03 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.98 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.95 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 93.91 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.88 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.87 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.86 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.82 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.82 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.78 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.75 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.71 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 93.69 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.68 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.67 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.64 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.6 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.59 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.52 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.51 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.5 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.5 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.48 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.48 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.46 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 93.44 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.43 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.38 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.34 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.34 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.33 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.32 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.31 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.31 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.28 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.25 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.16 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.15 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.11 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.05 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.05 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.04 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.98 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 92.88 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.84 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.84 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.82 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.75 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.74 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.73 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.73 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.71 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 92.7 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.68 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.66 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.66 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.66 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.66 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.64 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.63 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.61 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.58 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.55 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.53 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.47 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.44 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.44 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 92.41 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.34 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.32 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.3 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.29 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 92.27 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.23 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 92.23 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.15 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.15 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.14 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.14 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 92.13 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.09 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.07 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.95 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 91.92 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.92 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 91.91 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.89 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.88 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.87 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 91.86 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 91.84 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.84 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 91.83 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.82 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.76 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.75 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.71 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.71 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.7 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 91.68 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.64 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.61 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.55 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.54 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.5 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.48 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.43 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.43 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 91.41 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.36 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.36 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.31 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.28 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.24 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.24 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.22 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.2 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.18 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.18 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.16 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 91.16 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.14 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.14 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.12 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.1 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.08 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.04 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.04 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.03 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.03 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.03 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.98 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.98 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.97 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.92 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.91 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.9 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.89 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 90.86 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.76 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.74 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.73 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.73 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.7 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.69 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.69 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.68 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 90.67 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.65 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.62 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.6 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.5 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.5 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.45 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 90.44 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.43 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.41 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.41 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 90.4 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.34 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.32 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.3 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.22 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.22 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.19 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.18 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.17 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.15 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.13 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.12 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.08 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.05 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 90.03 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 89.98 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.93 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 89.92 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.91 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 89.86 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.78 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.77 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.77 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.7 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.7 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.63 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.61 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.57 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.55 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 89.53 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.48 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.4 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.39 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.38 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.32 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.29 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.28 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 89.26 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.16 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.07 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 89.07 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.0 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 88.99 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.98 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.94 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.88 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.84 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 88.78 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 88.78 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 88.77 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.77 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.77 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.74 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 88.66 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 88.62 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.62 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.59 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.57 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 88.5 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 88.48 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.46 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 88.4 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.4 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.28 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 88.1 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 88.09 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.04 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.98 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 87.85 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.82 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 87.79 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.79 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 87.75 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.72 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.62 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 87.56 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.42 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 87.4 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 87.35 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 87.35 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 87.27 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.15 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.13 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.09 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 87.05 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 87.02 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.94 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 86.93 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.76 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.58 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.53 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.44 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.31 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 86.2 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 85.98 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.93 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.87 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.7 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 85.47 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.46 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.4 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 85.39 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 85.28 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.27 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.17 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.91 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 84.7 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.67 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 84.48 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.31 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.74 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 83.51 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 83.5 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.36 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 83.29 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.17 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.13 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.02 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 82.99 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 82.8 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 82.79 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 82.77 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 82.63 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.25 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 81.22 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 80.94 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.52 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 80.43 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 80.41 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 80.16 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.15 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-64 Score=539.86 Aligned_cols=240 Identities=48% Similarity=0.796 Sum_probs=231.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
+|+|+||+|+|+.. ++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 48999999999754 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 463 GLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 463 ~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
+||||+|++|++||+|||.++.+..++++++.+++.+++.+++..+|.|++|.+|++|.+||||||||||||||++++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHHH
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRLQ 622 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 622 (1178)
|||||||||+||+.+++.|.+.++++.+++|+|+||||++.++.||+|+||++|+|++.|+|+||++++++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999899999999999999999999999999999999999999998788999998766
Q ss_pred h
Q 001041 623 E 623 (1178)
Q Consensus 623 ~ 623 (1178)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.2e-64 Score=542.42 Aligned_cols=243 Identities=52% Similarity=0.818 Sum_probs=233.3
Q ss_pred CCCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH
Q 001041 378 DDIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW 457 (1178)
Q Consensus 378 ~~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~ 457 (1178)
...+|.|+|+||+|+|+++ .+++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|+++++.++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH
Confidence 3346889999999999864 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 458 IRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 458 ~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+|++|+||||+|++|++||+|||.||.+..++++++++++.+++++++..+|+|++|.+|++|.+||||||||||||||+
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred hhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
+++|+|||||||||+||+++++.|.+.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|++
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~ 248 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEH 248 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHH
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHH
Confidence 9999999999999999999999999999999899999999999999999999999999999999999999997 688999
Q ss_pred HHHHH
Q 001041 618 LIRLQ 622 (1178)
Q Consensus 618 ~~~~~ 622 (1178)
+++.|
T Consensus 249 l~~~Q 253 (255)
T d2hyda1 249 LYSIQ 253 (255)
T ss_dssp HHTTT
T ss_pred HHHHc
Confidence 88654
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-62 Score=530.99 Aligned_cols=242 Identities=50% Similarity=0.838 Sum_probs=231.6
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH
Q 001041 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 379 ~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
...|.|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|+++++..++
T Consensus 9 ~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~ 87 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASL 87 (253)
T ss_dssp CCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHH
T ss_pred CCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhh
Confidence 456789999999999864 4679999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCCC-CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGKD-DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
|++|+||||+|++|++|+++|+.++.+ ..++++++++++.+++.++++.+|+|++|.++++|.+|||||||||||||||
T Consensus 88 r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal 167 (253)
T d3b60a1 88 RNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 167 (253)
T ss_dssp HHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHH
T ss_pred hheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999864 5688999999999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHH
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQ 617 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 617 (1178)
+++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||++.+..||+|+||++|+|++.|+|+||+++ ++.|++
T Consensus 168 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~~ 246 (253)
T d3b60a1 168 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQ 246 (253)
T ss_dssp HHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHH
T ss_pred hcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHH
Confidence 9999999999999999999999999999999899999999999999999999999999999999999999987 688999
Q ss_pred HHHHH
Q 001041 618 LIRLQ 622 (1178)
Q Consensus 618 ~~~~~ 622 (1178)
+++.|
T Consensus 247 l~~~Q 251 (253)
T d3b60a1 247 LHKMQ 251 (253)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 99865
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-62 Score=524.86 Aligned_cols=241 Identities=41% Similarity=0.729 Sum_probs=227.9
Q ss_pred CCcccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH
Q 001041 379 DIRGDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI 458 (1178)
Q Consensus 379 ~~~~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~ 458 (1178)
..+|.|+|+||+|+||++++.++|+|+||+|++||+++||||||||||||+++|+|+++|++|+|.+||+|+++++..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 35678999999999987666789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 459 RKKIGLVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
|++|+||+|+|++|++||+|||.+|. +..+.+++..+++.+++.++++.+|+|++|.++++|.+||||||||||||||+
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999999984 45677888899999999999999999999999999999999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+++|+|+|||||||+||+.+++.+.+.+.++.+ ++|+|+||||++.+..||||++|++|+|+++|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999988654 7899999999999999999999999999999999999987 6888
Q ss_pred HHHHH
Q 001041 616 SQLIR 620 (1178)
Q Consensus 616 ~~~~~ 620 (1178)
++|++
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 88864
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=5.9e-62 Score=521.59 Aligned_cols=235 Identities=45% Similarity=0.762 Sum_probs=224.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++||+|+|++ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 789999999975 347999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCcccHHHHHhcCC-CCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFTGSIKDNIAYGK-DDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~~ti~~ni~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
||||+|++|++||+||+.++. +..++++++++++.+++.+++..+|+|++|.+|++|.+|||||||||||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999874 4578899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHHHH
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLIRL 621 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 621 (1178)
|||||||||+||+++++.+.+.++++.+++|+|+||||++.+..||+|++|++|+|++.|+|+||+++ ++.|+++++.
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~ 237 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999987 6888888864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.5e-52 Score=454.88 Aligned_cols=218 Identities=28% Similarity=0.484 Sum_probs=195.9
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
+.|.|+|++|. ++|+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCC-----CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 34556665542 35799999999999999999999999999999999999999999999998 7
Q ss_pred eEEEcCCCCCCcccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCC
Q 001041 462 IGLVSQEPVLFTGSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDP 541 (1178)
Q Consensus 462 i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~ 541 (1178)
|+||||+||+|++||+|||.|+.. .++.+++.+++.+++.+++..+|+|+++.++++|.+|||||||||+|||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeccccccCceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999854 6788899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHhHHHHHHH-HHHHhcCCeEEEEecCcchhhccCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 542 RILLLDEATSALDAESEKVVQEA-LDRIMVNRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 542 ~illlDe~ts~lD~~~~~~i~~~-i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+|||||||||+||+.+++.+.+. +....+++|+|+||||++.++.||||++|++|+|++.|+|+||++. ...|.+.+
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHHH
Confidence 99999999999999998888765 4555678999999999999999999999999999999999999875 34555443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.8e-49 Score=415.26 Aligned_cols=222 Identities=27% Similarity=0.459 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+ +..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+|+.+.+.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 599999999996 35799999999999999999999999999999999999999999999999999988865 5679
Q ss_pred EEEcCCCCCC-cccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|||||+|.+| +.||+||+.|+... .+.++..+. +.+.++.+ |++........+||||||||++|||||+.
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR-----VRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHH-----HHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence 9999999999 57999999987532 333333321 22334444 66677788889999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYS 616 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 616 (1178)
+|+|||||||||+||+.+...+.+.++++.+ ++|+|+|||+++.+.. ||||++|++|+|++.|+++|+.+++...|.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 9999999999999999999999999988743 8999999999999865 999999999999999999999988765554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.3e-49 Score=416.59 Aligned_cols=226 Identities=29% Similarity=0.440 Sum_probs=191.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC---HHHHh
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ---LQWIR 459 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~---~~~~r 459 (1178)
.|+++|++++|+.. +..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 357899999999999999999999999999999999999999999999999997655 34457
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKDD--ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
++||||+|+|.+|. -||+|||.|+... .+.++..+.+ .+.++.+ |++........+||||||||++||||
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v-----~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARa 154 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV-----EEVAKIL--DIHHVLNHFPRELSGAQQQRVALARA 154 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHH-----HHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHH-----HHHHhhc--ChHhhhhCChhhCCHHHHhHHHHHhH
Confidence 78999999999995 5999999987543 3333322211 1223333 56666677778999999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1178)
|..+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+..++..
T Consensus 155 L~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~ 234 (242)
T d1oxxk2 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVS 234 (242)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSS
T ss_pred HhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCC
Confidence 9999999999999999999999999999988743 7899999999998855 999999999999999999999988665
Q ss_pred hHH
Q 001041 614 AYS 616 (1178)
Q Consensus 614 ~~~ 616 (1178)
.|.
T Consensus 235 ~~~ 237 (242)
T d1oxxk2 235 IQV 237 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-48 Score=409.85 Aligned_cols=215 Identities=29% Similarity=0.511 Sum_probs=187.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++|++++|++ .+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+|+.+.+.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999952 489999999999999999999999999999999999999999999999999988865 67899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKD---DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
||+|+|.+|. .||+||+.|+.. ....+++.++++.. |+.........+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL-----------KIEHLLDRNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT-----------TCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHh-----------cchhhHhCChhhCCHHHhcchhhhhhhhc
Confidence 9999999995 699999988632 12344555544443 44445566677899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCchH
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAY 615 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~ 615 (1178)
+|++||||||||+||+.+.+.+.+.++++. .+.|+|+|||+++.+.. ||||++|++|+|++.|+++|+.+++...+
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999999999998874 37899999999998876 99999999999999999999998765443
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5e-49 Score=413.95 Aligned_cols=217 Identities=26% Similarity=0.467 Sum_probs=159.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|+++.+.+.. |++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 68999999996 35699999999999999999999999999999999999999999999999999888754 56799
Q ss_pred EEcCCCCCC-cccHHHHHhcCCCCC--C----HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHH
Q 001041 464 LVSQEPVLF-TGSIKDNIAYGKDDA--T----TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARA 536 (1178)
Q Consensus 464 ~v~Q~~~l~-~~ti~~ni~~~~~~~--~----~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARa 536 (1178)
||||+|.+| ..||+||+.|+.... + ++++.++++..++ .........+||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l-----------~~~~~~~~~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL-----------AHLLDRKPKALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-----------hhhhhCChhhCCHHHHHHHHHHHH
Confidence 999999998 569999999874321 1 1233444444443 333455567899999999999999
Q ss_pred hccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh--cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCc
Q 001041 537 ILKDPRILLLDEATSALDAESEKVVQEALDRIM--VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEG 613 (1178)
Q Consensus 537 l~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~--~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~ 613 (1178)
|+.+|++|||||||++||+.+.+.+.+.++++. .++|+|+|||+++.+.. ||||++|++|+|++.|+++|+.+++..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCC
Confidence 999999999999999999999999999998864 48999999999998876 999999999999999999999988665
Q ss_pred hHH
Q 001041 614 AYS 616 (1178)
Q Consensus 614 ~~~ 616 (1178)
.|.
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.1e-49 Score=414.51 Aligned_cols=221 Identities=31% Similarity=0.509 Sum_probs=188.5
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH---Hh
Q 001041 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW---IR 459 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~---~r 459 (1178)
|+++|++++|+.+.. ..+|+|+||+|++||+++|+||||||||||+++|.|+.+|++|+|.++|+|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975432 25799999999999999999999999999999999999999999999999999888664 56
Q ss_pred cceEEEcCCCCCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHH
Q 001041 460 KKIGLVSQEPVLFT-GSIKDNIAYGKD--DATT----EEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIA 532 (1178)
Q Consensus 460 ~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~----~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~ 532 (1178)
++||||||+|.+|. -||+|||.++.. ..+. +++.+.++.+ |+.........+||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v-----------gL~~~~~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-----------GLGDKHDSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH-----------STTTTTSSCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHHH
Confidence 78999999999885 599999987521 1222 3333444433 4444456667899999999999
Q ss_pred HHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhc
Q 001041 533 IARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVE 609 (1178)
Q Consensus 533 lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~ 609 (1178)
|||||..+|++|||||||++||+.+.+.+.+.++++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+.+
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999988743 7899999999999876 99999999999999999999998
Q ss_pred CCCchH
Q 001041 610 DPEGAY 615 (1178)
Q Consensus 610 ~~~~~~ 615 (1178)
++...|
T Consensus 231 ~P~~~~ 236 (240)
T d3dhwc1 231 HPKTPL 236 (240)
T ss_dssp SSCCTT
T ss_pred CCCChH
Confidence 754443
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=9e-49 Score=414.14 Aligned_cols=220 Identities=28% Similarity=0.493 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHH----H
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQW----I 458 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~----~ 458 (1178)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+.+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 4899999999963 46999999999999999999999999999999999999999999999999997766543 3
Q ss_pred hcceEEEcCCCCCCc-ccHHHHHhcCCC--CCCHHH----HHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHH
Q 001041 459 RKKIGLVSQEPVLFT-GSIKDNIAYGKD--DATTEE----IRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRI 531 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~~-~ti~~ni~~~~~--~~~~~~----~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri 531 (1178)
|++||||+|+|.+|. .||+||+.++.. ..+.++ +.++++.+ |+.........+||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~-----------~l~~~~~~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL-----------GLTELLNRKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-----------TCGGGTTCCGGGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHH
Confidence 678999999999995 599999998632 123333 22333332 344455667788999999999
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHh
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLV 608 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~ 608 (1178)
+|||||..+|++|||||||++||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+.
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988743 8999999999999866 9999999999999999999999
Q ss_pred cCCCchHH
Q 001041 609 EDPEGAYS 616 (1178)
Q Consensus 609 ~~~~~~~~ 616 (1178)
.++...|.
T Consensus 229 ~~P~~~~~ 236 (240)
T d1g2912 229 DKPANTFV 236 (240)
T ss_dssp HSCSBHHH
T ss_pred hCCCCHHH
Confidence 88765554
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-48 Score=411.31 Aligned_cols=213 Identities=30% Similarity=0.470 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHH----
Q 001041 384 IELRDVYFSYPARPN-EQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWI---- 458 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~-~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~---- 458 (1178)
|+++|++++|+.... ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||+++...+.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999975322 247999999999999999999999999999999999999999999999999999987765
Q ss_pred hcceEEEcCCCCCC-cccHHHHHhcCC-----CCCCHHHH-HHHHHHhcHHHHHHhCCCCccc-hhcCCCCCCChHHHHH
Q 001041 459 RKKIGLVSQEPVLF-TGSIKDNIAYGK-----DDATTEEI-RVATELANAAKFIDKLPQGIDT-LVGEHGTQLSGGQKQR 530 (1178)
Q Consensus 459 r~~i~~v~Q~~~l~-~~ti~~ni~~~~-----~~~~~~~~-~~~~~~~~~~~~i~~~~~g~~t-~~~~~g~~lSgGqkqr 530 (1178)
|++||||+|+|.++ .-||+||+.++. +..+.++. .++.+ .++.+ |+.. .......+||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~L~~~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE------CLKMA--ELEERFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH------HHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHH------HHHhh--chhhhhhcCChhhCCHHHHHH
Confidence 35799999999888 569999999742 22333332 22222 22222 3332 2345567899999999
Q ss_pred HHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhccCEEEEEeCCEEEEecCh
Q 001041 531 IAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRNADMIAVIHRGKIVEKGTH 604 (1178)
Q Consensus 531 i~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 604 (1178)
++|||||..+|++||||||||+||+.+...+.+.++++.+ ++|+|+|||+++.++.||||++|++|+|++.|++
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 9999999999999999999999999999999999998753 7899999999998888999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.9e-46 Score=401.31 Aligned_cols=225 Identities=30% Similarity=0.531 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCC--------
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQ-------- 454 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~-------- 454 (1178)
.|+++|++++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 4899999999963 46999999999999999999999999999999999999999999999999986543
Q ss_pred -----HHHHhcceEEEcCCCCCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHhcHHHHHHhCCCCccchh-cCCCCCCC
Q 001041 455 -----LQWIRKKIGLVSQEPVLFT-GSIKDNIAYGK---DDATTEEIRVATELANAAKFIDKLPQGIDTLV-GEHGTQLS 524 (1178)
Q Consensus 455 -----~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~-~~~g~~lS 524 (1178)
....|++||||+|+|.+|. .||+||+.++. ...+.++..+.. .+.++.+ |+.... .....+||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~p~~LS 151 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERA-----LKYLAKV--GIDERAQGKYPVHLS 151 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHH-----HHHHHHT--TCCHHHHTSCGGGSC
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHH-----HHHHHHc--CCchhhhccCccccc
Confidence 2356788999999999885 69999998752 223333222211 1222222 333222 33456899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
||||||++|||||..+|++|||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||||+||++|+|++.|
T Consensus 152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g 231 (258)
T d1b0ua_ 152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231 (258)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999998765 47899999999999875 9999999999999999
Q ss_pred ChhHHhcCCCchHHH
Q 001041 603 THSKLVEDPEGAYSQ 617 (1178)
Q Consensus 603 ~~~~l~~~~~~~~~~ 617 (1178)
+++|+++++...|.+
T Consensus 232 ~~~ev~~~P~~~~~~ 246 (258)
T d1b0ua_ 232 DPEQVFGNPQSPRLQ 246 (258)
T ss_dssp CHHHHHHSCCSHHHH
T ss_pred CHHHHHhCCCCHHHH
Confidence 999999887666654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-45 Score=393.68 Aligned_cols=219 Identities=25% Similarity=0.420 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHh-cc
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIR-KK 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r-~~ 461 (1178)
.++++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...+.+..+ ..
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999998877664 45
Q ss_pred eEEEcCCCCCCc-ccHHHHHhcCCCCC-CHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc
Q 001041 462 IGLVSQEPVLFT-GSIKDNIAYGKDDA-TTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK 539 (1178)
Q Consensus 462 i~~v~Q~~~l~~-~ti~~ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~ 539 (1178)
|+|+||++.+|. -|++||+.++.... ..+...+..+.. +..+ .++.........+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHh-hChHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 999999999996 59999998764221 222222222111 1111 134444556667899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+|++.|+++|+.++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999998874 47899999999998765 999999999999999999999875
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.6e-45 Score=383.03 Aligned_cols=220 Identities=32% Similarity=0.515 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
+++ ++..+|++ ..+ |+||+++ ||+++|+||||||||||+++|.|+++|++|+|.++|+|+.+++.. |++||
T Consensus 3 l~v-~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC----EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 445 45667742 233 8999995 689999999999999999999999999999999999999988765 67899
Q ss_pred EEcCCCCCCc-ccHHHHHhcCCCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCC
Q 001041 464 LVSQEPVLFT-GSIKDNIAYGKDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPR 542 (1178)
Q Consensus 464 ~v~Q~~~l~~-~ti~~ni~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~ 542 (1178)
||||+|.+|. -||+|||.|+....+..+.++. +.+.++.+ |+..........||||||||++|||||+.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~-----v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHH-----HHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHHH-----HHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence 9999999995 6999999998655555444321 23344444 67777788888999999999999999999999
Q ss_pred EEEEeCCCCCCCHHhHHHHHHHHHHHhc--CCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcCCCchHHHHH
Q 001041 543 ILLLDEATSALDAESEKVVQEALDRIMV--NRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVEDPEGAYSQLI 619 (1178)
Q Consensus 543 illlDe~ts~lD~~~~~~i~~~i~~~~~--~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 619 (1178)
+||||||||+||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+++|+.+.++....+++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHh
Confidence 9999999999999999999999988743 7899999999998876 999999999999999999999987655444443
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.4e-45 Score=389.69 Aligned_cols=218 Identities=28% Similarity=0.451 Sum_probs=187.3
Q ss_pred ccEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcc
Q 001041 382 GDIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKK 461 (1178)
Q Consensus 382 ~~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~ 461 (1178)
|.|+++|++++|+. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+.+ ..+.+|+.
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 57999999999963 569999999999999999999999999999999999999999999999999987 45678999
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCC--CCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhc
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKD--DATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAIL 538 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~ 538 (1178)
++||||++.+| +.|++||+.|... ..+.+++++..+.. ++.+ |++....+...+||||||||++|||||+
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHh
Confidence 99999999888 5699999976421 12344444333221 1221 5566667777889999999999999999
Q ss_pred cCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEecChhHHhcC
Q 001041 539 KDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 539 ~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
.+|+||||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||||++|++|+|++.|+++++.++
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999998864 57999999999999875 999999999999999999999754
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.1e-45 Score=394.53 Aligned_cols=216 Identities=23% Similarity=0.390 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhc-c
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRK-K 461 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~-~ 461 (1178)
-++++|++++|++ .++|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...++++.++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 4899999999963 46999999999999999999999999999999999999999999999999999999887654 5
Q ss_pred eEEEcCCCCCC-cccHHHHHhcCCCC----------------CCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCC
Q 001041 462 IGLVSQEPVLF-TGSIKDNIAYGKDD----------------ATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLS 524 (1178)
Q Consensus 462 i~~v~Q~~~l~-~~ti~~ni~~~~~~----------------~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lS 524 (1178)
|+|+||+|.+| +.||+||+.++... ...+...++. +.++.+ |++........+||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~--~l~~~~~~~~~~LS 152 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF------KILEFL--KLSHLYDRKAGELS 152 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHH------HHHHHT--TCGGGTTSBGGGSC
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHH------HHHHhc--CcchhccCchhhCC
Confidence 99999999877 57999999886321 1111122221 222222 45555566677899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhhc-cCEEEEEeCCEEEEec
Q 001041 525 GGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVRN-ADMIAVIHRGKIVEKG 602 (1178)
Q Consensus 525 gGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~~-~d~i~~l~~G~i~~~g 602 (1178)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||+||++|+|++.|
T Consensus 153 gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g 232 (254)
T d1g6ha_ 153 GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 232 (254)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred cHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEe
Confidence 999999999999999999999999999999999999999998764 57999999999999855 9999999999999999
Q ss_pred ChhHHhc
Q 001041 603 THSKLVE 609 (1178)
Q Consensus 603 ~~~~l~~ 609 (1178)
+++|+.+
T Consensus 233 ~~~e~~~ 239 (254)
T d1g6ha_ 233 RGEEEIK 239 (254)
T ss_dssp ESHHHHH
T ss_pred cHHHHhh
Confidence 9998754
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-40 Score=353.24 Aligned_cols=208 Identities=24% Similarity=0.382 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 384 IELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 384 i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
++++||+++| .|+||||+|++||+++|+||||||||||+++|.|+. |.+|+|.++|.++...+.+.++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899996543 699999999999999999999999999999999976 68899999999999999999999999
Q ss_pred EEcCCCC-CCcccHHHHHhcCCCCCC-HHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhcc--
Q 001041 464 LVSQEPV-LFTGSIKDNIAYGKDDAT-TEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILK-- 539 (1178)
Q Consensus 464 ~v~Q~~~-l~~~ti~~ni~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~-- 539 (1178)
|++|+.. .|..++.+|+.++..... .+.+.++++.. |++..++....+||||||||++||||+++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-----------~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-----------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhc-----------CCHhHhCcChhhcCHHHHHHHHHHHHHHhhC
Confidence 9999875 467899999987655433 33344443333 45556677778899999999999999997
Q ss_pred -----CCCEEEEeCCCCCCCHHhHHHHHHHHHHHh-cCCeEEEEecCcchhh-ccCEEEEEeCCEEEEecChhHHhcC
Q 001041 540 -----DPRILLLDEATSALDAESEKVVQEALDRIM-VNRTTVIVAHRLSTVR-NADMIAVIHRGKIVEKGTHSKLVED 610 (1178)
Q Consensus 540 -----~~~illlDe~ts~lD~~~~~~i~~~i~~~~-~~~t~i~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 610 (1178)
+|+||||||||++||+.+.+.+.+.++++. +++|+|++||+++.+. .||||++|++|+|++.|+++|++.+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 779999999999999999999999998864 5789999999999865 5999999999999999999999764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.8e-38 Score=328.89 Aligned_cols=191 Identities=23% Similarity=0.435 Sum_probs=156.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcce
Q 001041 383 DIELRDVYFSYPARPNEQIFSGFSISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKI 462 (1178)
Q Consensus 383 ~i~~~~~~~~y~~~~~~~~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i 462 (1178)
.|+++|++++|+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ .|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999994 369999999999999999999999999999999999999999999999998864 57789
Q ss_pred EEEcCCCCCC-cccHHHHHhcC----CCCCCHHHHHHHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHh
Q 001041 463 GLVSQEPVLF-TGSIKDNIAYG----KDDATTEEIRVATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAI 537 (1178)
Q Consensus 463 ~~v~Q~~~l~-~~ti~~ni~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal 537 (1178)
+|+||++.++ .-|+++|+.+. ....+++++.++++..++. ++ .++..+||||||||++||||+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~----~~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--------DL----KKKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--------CT----TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc--------cc----ccccCcCCCcHHHHHHHHHHH
Confidence 9999999887 46999998642 2234566666555443211 12 233457999999999999999
Q ss_pred ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEEEeC
Q 001041 538 LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIHR 595 (1178)
Q Consensus 538 ~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~l~~ 595 (1178)
+++|+++||||||++||+++.+.+.+.+.+..+++++++|+|+ +.+..||++.+|++
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~-~~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR-EELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEES-SCCTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEe-chhhhcchhhheee
Confidence 9999999999999999999999999999887665555555544 23567999988753
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.6e-37 Score=329.24 Aligned_cols=139 Identities=44% Similarity=0.739 Sum_probs=131.9
Q ss_pred cCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH
Q 001041 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1178)
Q Consensus 1037 ~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~ 1116 (1178)
...+|+|+|+||+|+|+++ +++||+||||+|++||++||||+||||||||+++|+|+|+|++|+|.|||+|+++++.++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH
Confidence 3457899999999999854 457999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1117 LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
||++|++|||+|.||++||+|||++|+ ++++++++++|++.+++++||.+||+||||.++
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~-~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~ 149 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGR-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVG 149 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGC-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCC
T ss_pred hhheeeeeeccccCCCCCHHHHHhccC-cCCCHHHHHHHHHHhCCHHHHHhccccccchhc
Confidence 999999999999999999999999995 478999999999999999999999999999874
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-36 Score=318.65 Aligned_cols=134 Identities=34% Similarity=0.642 Sum_probs=128.1
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
+|+|+||||+|+++ +++||+||||+|++||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 59999999999754 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1122 GLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1122 siV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
++|||||+||++||+|||++++ +++++++++++++.++++++|..+|+|+||.++
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~ 134 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLAN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVG 134 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTS-TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCS
T ss_pred EEEecccccCCccccccccccC-ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcC
Confidence 9999999999999999999995 479999999999999999999999999999874
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.3e-35 Score=316.88 Aligned_cols=140 Identities=46% Similarity=0.749 Sum_probs=132.4
Q ss_pred cCccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH
Q 001041 1037 EDVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW 1116 (1178)
Q Consensus 1037 ~~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~ 1116 (1178)
+...|+|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.++
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhh
Confidence 3456899999999999854 457999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1117 LRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1117 LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|++|++|||||.||++|+++|+.+|+....+++++++|++.+++++||.+||+||||.++
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~ 147 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIG 147 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCC
T ss_pred hhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhc
Confidence 9999999999999999999999999976678999999999999999999999999999874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.8e-35 Score=315.78 Aligned_cols=140 Identities=41% Similarity=0.702 Sum_probs=132.8
Q ss_pred CccccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH
Q 001041 1038 DVKGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL 1117 (1178)
Q Consensus 1038 ~~~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L 1117 (1178)
..+|.|+|+||+|+|+++++.+||+||||+|++||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 35689999999999987666679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1118 RQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
|++|++|||+|+||++||+|||.+|..+..++++++++++.+++++++.+||+|+||.+.
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~ 146 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD 146 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCC
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHh
Confidence 999999999999999999999999965678899999999999999999999999999874
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=3.4e-34 Score=305.61 Aligned_cols=133 Identities=36% Similarity=0.657 Sum_probs=126.9
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||||+|+++ ++||+||||+|+|||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 7999999999743 46999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1123 LVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1123 iV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|||||.||++||+|||.++..+..++++++++++.+++++++..+|+|+||.++
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 134 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVG 134 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEES
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCccccccccc
Confidence 9999999999999999999865678999999999999999999999999999874
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=2e-27 Score=267.75 Aligned_cols=316 Identities=19% Similarity=0.236 Sum_probs=290.0
Q ss_pred hhHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 706 PTRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSRFWALIYLALGAGSFLLSPAQSYFF 785 (1178)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1178)
.+|+++.+.+++++.+++++++.++.++..+..+++++.++|......+ ......+.++++++.++..++.+++.++.
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 3567777888999999999999888888889999999999987654322 12223334566667778888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 001041 786 AVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTASWQL 865 (1178)
Q Consensus 786 ~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~~~~l 865 (1178)
...+.++..++|.++++|++++|++||+ ++++|++++|+++|++.+...+...+..++..++.+++.+++++..+|++
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 158 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 158 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHH--HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhccccchhhHHHHhhcccchhhcc--ccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccc
Confidence 9999999999999999999999999999 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhHHHHH
Q 001041 866 ALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIRQGMV 945 (1178)
Q Consensus 866 ~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1178)
++++++++|+..++.....++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.+++++..++..+...+....
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
T d3b60a2 159 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhcCCCC
Q 001041 946 SGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIIDRESK 1025 (1178)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~ 1025 (1178)
.....+...++..+..++++++|++++.+|.+|+|+++++..+...+..|+..+.+....++++.++.+|+.+++|.|+|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999898999999999999999999999999999999999999999999999999999999999999998765
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.96 E-value=2.6e-27 Score=267.53 Aligned_cols=317 Identities=16% Similarity=0.168 Sum_probs=284.2
Q ss_pred hHhhhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhhhhH-----HHHHHHHHHHHHHHHHHHHH
Q 001041 707 TRRLAYLNKPEIPVILAGTIAAMANGVILPIYGLLISSVIETFFKPPHELKKDSR-----FWALIYLALGAGSFLLSPAQ 781 (1178)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 781 (1178)
.|+++.+.+++++.++.++++.++.+++....+++++.++|.............. .....++++.++..++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778889999999988888888888888899999999987654221111111 11222334455677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCCChhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 782 SYFFAVAGNKLIQRIRSMCFEKVIHMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALARIVQNISTAAAGLIIAFTA 861 (1178)
Q Consensus 782 ~~~~~~~~~~~~~~lr~~l~~~ll~~p~~fFd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~ii~~~~~ 861 (1178)
.++..+.+.++..++|.++++|++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++++
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhcccccccc--cccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999 5889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhHHHHHccchHHHHHHHHHHhhhHHHhhhH
Q 001041 862 SWQLALIILVMLPLIGVSGYTQMKFMKGFSADAKMKYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEAPMKTGIR 941 (1178)
Q Consensus 862 ~~~l~l~~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tIraf~~e~~~~~~~~~~~~~~~~~~~~ 941 (1178)
+|++++++++++|+..+..+...++.++..++.++..++.++.+.|.++|+++||+|+.|+++.++|++..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHhc
Q 001041 942 QGMVSGGGFGASFFLLFAFYAASFYAGARLVEDGKATFSDVFKVFFSLTMTAIGISQSSSFSSDSNKAKSAAASIFAIID 1021 (1178)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~t~g~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 1021 (1178)
..............+..+..++++++|++++.+|.+|+|+++++..+...+..|+..+.+....++++.++++|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 001041 1022 RESK 1025 (1178)
Q Consensus 1022 ~~~~ 1025 (1178)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7653
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=7e-23 Score=230.08 Aligned_cols=316 Identities=18% Similarity=0.278 Sum_probs=270.6
Q ss_pred hHHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 45 PFYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETVDKVSKVAVKFVYLGIGSGIASFLQV 124 (1178)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 124 (1178)
.++++++|.++.++ .+++++++.++.+++.+..|++++.++|......+. +......+.++++.++..++.+++.
T Consensus 3 ~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~l~~~~~~~~~~~~~~~i~~~~~~ 77 (319)
T d3b60a2 3 TFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMPLVVIGLMILRGITSYISS 77 (319)
T ss_dssp HHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH----HHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 36678888766543 445566666777777888888999999875433221 2222334455566677778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 001041 125 TCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIKGW 204 (1178)
Q Consensus 125 ~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1178)
++..+.+.+...++|.+++++++++|+.+|++. ++|++++|+++|++.+.+.+...+..++..+..+++.+++++..+|
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (319)
T d3b60a2 78 YCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhccccchhhHHHHhhcccchhhcccc-ccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhc
Confidence 999999999999999999999999999999974 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 205 LLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQEG 284 (1178)
Q Consensus 205 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 284 (1178)
.+++++++.+|+..++.....+...+..++..+..++..+.+.|.++|+++||.|++|+.+.+++++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T d3b60a2 157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 001041 285 LAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETINRK 364 (1178)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~ 364 (1178)
...+.......++.....++.+++|.+++..+.++.|.+++++.+......++..+......+.++.++.+|++++++++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88877777777777777777788888888899999999988888888888889998899999999999999999999887
Q ss_pred CC
Q 001041 365 PE 366 (1178)
Q Consensus 365 ~~ 366 (1178)
||
T Consensus 317 ~E 318 (319)
T d3b60a2 317 QE 318 (319)
T ss_dssp CS
T ss_pred CC
Confidence 65
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=1.1e-22 Score=229.21 Aligned_cols=319 Identities=14% Similarity=0.122 Sum_probs=263.0
Q ss_pred HHHHhHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCchhhH---HHHHHHHHHHHHHHHHHHHHHHH
Q 001041 46 FYKLFTFADSADTALMIIGSIGAIGNGLCLPLMTLLFGDLINTFGDNQNNSETV---DKVSKVAVKFVYLGIGSGIASFL 122 (1178)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~ 122 (1178)
++++++|.++.++ .+++++++.++.+++....|++++.++|............ .........++++.++..++.++
T Consensus 2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567787766543 4445555666666666777889999999875433211111 11111222233444556677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhccCCccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001041 123 QVTCWMITGERQATRIRGLYLKTILRQDVAFFDNETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLMATFLGGFLIAFIK 202 (1178)
Q Consensus 123 ~~~~~~~~~~~~~~~lr~~~~~~il~~~~~~f~~~~~~G~i~~r~s~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1178)
+.++..+.+.+...++|.+++++++++|+++|++. ++|++++|+++|++.+++.+...+...+..+..+++.++++++.
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhcccccccccc-cccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 88888888999999999999999999999999974 99999999999999999998888888888888889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Q 001041 203 GWLLTLVMLSSIPLLAMSGGVMAIMISKMSSRGQGAYAKAASVVEQTIGSIRTVASFTGEKQAMSNYKKFLVTAYKSGVQ 282 (1178)
Q Consensus 203 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 282 (1178)
+|.++++.++.+|+..++...+.+..++..++..+..++..+.+.|.++|+++||+|++|+.+.+++.+..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 001041 283 EGLAAGIGLGMVMLIVFCSYALSVWYGGKLILEEGYNGGQVVNVMVAVLTGSMSLGEASPCLSAFGAGQAAAFKMFETIN 362 (1178)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 362 (1178)
.....+.......++..+..++.+++|.+++..+.++.|.+++++.+......++..+......+..+..+.+|+++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 88877777777777777777788888999999999999999888777777777888888899999999999999999998
Q ss_pred cCCC
Q 001041 363 RKPE 366 (1178)
Q Consensus 363 ~~~~ 366 (1178)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 7654
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.91 E-value=3.9e-25 Score=230.55 Aligned_cols=124 Identities=23% Similarity=0.421 Sum_probs=110.1
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++|||++|++ .+|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|++||+|+++++.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999952 389999999999999999999999999999999999999999999999999987765 78999
Q ss_pred cccccccccc-ccHHHHHhcCCC--CCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1123 LVSQEPVLFN-DTIRANIAYGKG--GDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1123 iV~Qdp~LF~-gTIreNI~~g~~--~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
+|||++.||. -|++|||.|+.. ....++++.++++..++.++..+.|..|
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 128 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhC
Confidence 9999999995 599999987521 1245778999999999999888877654
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=2e-25 Score=242.94 Aligned_cols=118 Identities=22% Similarity=0.390 Sum_probs=106.0
Q ss_pred cccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH
Q 001041 1040 KGEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ 1119 (1178)
Q Consensus 1040 ~g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~ 1119 (1178)
.+.|+|+|++|.| +|||+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 36 ~~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g------------- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97 (281)
T ss_dssp ----CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------
T ss_pred CCcEEEEEcCCCC-----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------
Confidence 3568888887644 3699999999999999999999999999999999999999999999999
Q ss_pred hccccccccccccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhcccccccccc
Q 001041 1120 QMGLVSQEPVLFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQVRTSRLL 1177 (1178)
Q Consensus 1120 ~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~gldT~v~ 1177 (1178)
+|++|||+|.+|++||+|||.||. ..++.+++++++.+++++++.++|+|++|.++
T Consensus 98 ~i~~v~Q~~~l~~~tv~eni~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~ 153 (281)
T d1r0wa_ 98 RVSFCSQFSWIMPGTIKENIIFGV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLG 153 (281)
T ss_dssp CEEEECSSCCCCSEEHHHHHTTTS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEEC
T ss_pred EEEEEeccccccCceeeccccccc--cccchHHHHHHHHHHhHHHHHhchhhhhhhhh
Confidence 489999999999999999999984 57889999999999999999999999999764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=7.2e-25 Score=229.31 Aligned_cols=123 Identities=21% Similarity=0.414 Sum_probs=87.6
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
|+++||+++|. +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||+|+.+.+.. |++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 79999999995 34699999999999999999999999999999999999999999999999999988754 68899
Q ss_pred ccccccccccc-cHHHHHhcCCC-----CCCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPVLFND-TIRANIAYGKG-----GDATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~LF~g-TIreNI~~g~~-----~~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+|||+|.||.. |++|||.++.. ....++.+.++++..++.++..+.|.
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~ 129 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPK 129 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC-----------
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChh
Confidence 99999999955 99999998632 11224568889999999887766554
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=1e-24 Score=229.29 Aligned_cols=130 Identities=22% Similarity=0.360 Sum_probs=110.5
Q ss_pred EEEeeeEEeCCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH---HH
Q 001041 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW---LR 1118 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~-~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~---LR 1118 (1178)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||+|+.+++.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 799999999975422 24899999999999999999999999999999999999999999999999999888654 66
Q ss_pred Hhccccccccccccc-cHHHHHhcC-----CCCCCCHHHHHHHHHHcCchHHHhhccccc
Q 001041 1119 QQMGLVSQEPVLFND-TIRANIAYG-----KGGDATEAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g-----~~~~asdeei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++||+|||||.||.. |++|||.++ .+...-++.+.++++.+++.++..+.|..|
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~L 141 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNL 141 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCC
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhC
Confidence 889999999999965 999999864 111122466889999999998877777543
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.90 E-value=4.7e-25 Score=231.48 Aligned_cols=130 Identities=19% Similarity=0.342 Sum_probs=111.9
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC---hHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ---LKWLR 1118 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~---l~~LR 1118 (1178)
.|+++||+++|+.+ +.+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||+|+...+ ...+|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999643 356999999999999999999999999999999999999999999999999998766 45568
Q ss_pred Hhccccccccccccc-cHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHhhccccc
Q 001041 1119 QQMGLVSQEPVLFND-TIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1119 ~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~asd----eei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++||+|||+|.||.. |++|||.++.. ...+. +.+.++++..++.++..+.|..|
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~L 141 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhC
Confidence 899999999999965 99999998632 12333 45888999999998888777654
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=2.2e-24 Score=226.23 Aligned_cols=126 Identities=21% Similarity=0.396 Sum_probs=103.6
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+++|+ +..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||+|+++++.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 499999999995 35699999999999999999999999999999999999999999999999999998865 6789
Q ss_pred ccccccccccc-ccHHHHHhcCCC-CCCCH----HHHHHHHHHcCchHHHhhccccc
Q 001041 1122 GLVSQEPVLFN-DTIRANIAYGKG-GDATE----AEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1122 siV~Qdp~LF~-gTIreNI~~g~~-~~asd----eei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|+|||+|.||. -|++||+.|+.. ...+. +.+.++++..++.++..+.|..|
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 137 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL 137 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTC
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhC
Confidence 99999999995 699999998642 13444 44567899999998877766544
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.89 E-value=2e-24 Score=225.91 Aligned_cols=128 Identities=26% Similarity=0.420 Sum_probs=103.9
Q ss_pred EEEeeeEEeCCCCCC-ccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHH----
Q 001041 1043 IELHHVSFKYPSRPD-VQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWL---- 1117 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~-~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~L---- 1117 (1178)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+.+++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 799999999974321 247999999999999999999999999999999999999999999999999999998776
Q ss_pred HHhcccccccccccc-ccHHHHHhcCC----CCCCCHH----HHHHHHHHcCchH-HHhhccc
Q 001041 1118 RQQMGLVSQEPVLFN-DTIRANIAYGK----GGDATEA----EIQAASEMANAHK-FICSLQQ 1170 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~-gTIreNI~~g~----~~~asde----ei~~Al~~A~~~d-fI~~LP~ 1170 (1178)
|++||+|||+|.||. -||+||+.++. .+..+.+ ++.+.++..++.+ +..+.|.
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~ 144 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPN 144 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGG
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChh
Confidence 467999999999985 59999998641 1233433 4566777777754 4344443
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.88 E-value=3.6e-24 Score=225.16 Aligned_cols=128 Identities=19% Similarity=0.353 Sum_probs=108.9
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHH----H
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKW----L 1117 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~----L 1117 (1178)
.|+++||+++|. +.+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+.+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 489999999995 346999999999999999999999999999999999999999999999999998876544 3
Q ss_pred HHhccccccccccccc-cHHHHHhcCCC-CCCC----HHHHHHHHHHcCchHHHhhccccc
Q 001041 1118 RQQMGLVSQEPVLFND-TIRANIAYGKG-GDAT----EAEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1118 R~~IsiV~Qdp~LF~g-TIreNI~~g~~-~~as----deei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
|++|++|||+|.||.. |++||+.++.. ...+ ++.+.++++..++.++..+.|..|
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~L 140 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPREL 140 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGS
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhC
Confidence 7889999999999965 99999987521 1223 344788999999988877766543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.86 E-value=8.7e-23 Score=218.45 Aligned_cols=127 Identities=20% Similarity=0.307 Sum_probs=106.0
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCCh-------
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQL------- 1114 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l------- 1114 (1178)
.|+++||+++|. +.+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...+.
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999995 3469999999999999999999999999999999999999999999999999976543
Q ss_pred ------HHHHHhcccccccccccc-ccHHHHHhcCC--CCCCC----HHHHHHHHHHcCchHHH-hhcccc
Q 001041 1115 ------KWLRQQMGLVSQEPVLFN-DTIRANIAYGK--GGDAT----EAEIQAASEMANAHKFI-CSLQQV 1171 (1178)
Q Consensus 1115 ------~~LR~~IsiV~Qdp~LF~-gTIreNI~~g~--~~~as----deei~~Al~~A~~~dfI-~~LP~g 1171 (1178)
..+|++|++|||+|.||. -|++||+.+++ ....+ ++.+.++++..++.+.. .+.|..
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~ 149 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 149 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCccc
Confidence 468899999999999996 59999998652 11233 34577888889997754 445543
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.85 E-value=3.7e-22 Score=211.68 Aligned_cols=99 Identities=23% Similarity=0.505 Sum_probs=90.9
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHH-h
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQ-Q 1120 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~-~ 1120 (1178)
-|+++||+++|. +..||+||||+|++||.+||+||+|||||||+++|+|+++|++|+|++||.|+.+.+.+..++ .
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 389999999995 346999999999999999999999999999999999999999999999999999999887755 4
Q ss_pred ccccccccccccc-cHHHHHhcCC
Q 001041 1121 MGLVSQEPVLFND-TIRANIAYGK 1143 (1178)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~ 1143 (1178)
|+++||++.||.. |++||+.++.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~ 106 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGA 106 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGG
T ss_pred ccccCcccccCCcccHHHHHHHHH
Confidence 8999999999975 9999998753
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=4.4e-22 Score=210.59 Aligned_cols=126 Identities=16% Similarity=0.340 Sum_probs=104.0
Q ss_pred ccEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh
Q 001041 1041 GEIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ 1120 (1178)
Q Consensus 1041 g~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~ 1120 (1178)
|.|+++|++.+|. +.+||+||||+|++||.+|||||+|||||||+++|+|+++|++|+|.|+|.|+.+. .+.+|++
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhh
Confidence 6799999999996 34699999999999999999999999999999999999999999999999999874 5789999
Q ss_pred ccccccccccccc-cHHHHHhcCCC-CCCCHH----HHHHHHHHcCchHHHhhccc
Q 001041 1121 MGLVSQEPVLFND-TIRANIAYGKG-GDATEA----EIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1121 IsiV~Qdp~LF~g-TIreNI~~g~~-~~asde----ei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+++|||++.+|.. |++||++|... ...+++ .+.++++..++.++..+.|.
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 132 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVS 132 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGG
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhh
Confidence 9999999988855 99999975310 012333 45666677777666544443
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=5.7e-22 Score=212.63 Aligned_cols=97 Identities=19% Similarity=0.384 Sum_probs=90.8
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHh-c
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQ-M 1121 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~-I 1121 (1178)
|+++||+.+|. +.+||+||||+|++||.+||+||+|||||||+++|.|+++|++|+|++||.|+...+..++++. |
T Consensus 5 L~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 5 LRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp EEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred EEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcC
Confidence 89999999996 3469999999999999999999999999999999999999999999999999999999988765 9
Q ss_pred cccccccccc-cccHHHHHhcC
Q 001041 1122 GLVSQEPVLF-NDTIRANIAYG 1142 (1178)
Q Consensus 1122 siV~Qdp~LF-~gTIreNI~~g 1142 (1178)
++|||+|.+| +-|++|||.+|
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~ 103 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIG 103 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGG
T ss_pred CccCCccccCCCCeeeeeeeeh
Confidence 9999999988 46999999876
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.82 E-value=7.9e-21 Score=196.42 Aligned_cols=111 Identities=23% Similarity=0.466 Sum_probs=98.2
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhc
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
.|+++||+|+|+ ++||+||||+|++||.+||+||+|||||||+++|+|+++|++|+|.+||+|+.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999993 259999999999999999999999999999999999999999999999999864 67899
Q ss_pred cccccccccccc-cHHHHHh-----cCCCCCCCHHHHHHHHHHcCchH
Q 001041 1122 GLVSQEPVLFND-TIRANIA-----YGKGGDATEAEIQAASEMANAHK 1163 (1178)
Q Consensus 1122 siV~Qdp~LF~g-TIreNI~-----~g~~~~asdeei~~Al~~A~~~d 1163 (1178)
+++||++.++.. |+++|+. ++. ..+++|++++++..++.+
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 118 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGV--KVNKNEIMDALESVEVLD 118 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTCCC
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCcc
Confidence 999999998754 9999986 342 567899999998877543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.80 E-value=3.3e-20 Score=193.82 Aligned_cols=117 Identities=22% Similarity=0.414 Sum_probs=98.3
Q ss_pred eeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcccccc
Q 001041 1047 HVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQ 1126 (1178)
Q Consensus 1047 nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Q 1126 (1178)
++.-+|.+ ..+ ||||+++ ||.+||+||||||||||+++|.|+++|++|+|.+||+|+.+++.. |++||+|||
T Consensus 6 ~~~k~~g~----~~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q 77 (240)
T d2onka1 6 RAEKRLGN----FRL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQ 77 (240)
T ss_dssp EEEEEETT----EEE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCS
T ss_pred EEEEEECC----EEE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeecc
Confidence 45566632 124 8999995 789999999999999999999999999999999999999998865 789999999
Q ss_pred cccccc-ccHHHHHhcCCCCCCCH----HHHHHHHHHcCchHHHhhccccc
Q 001041 1127 EPVLFN-DTIRANIAYGKGGDATE----AEIQAASEMANAHKFICSLQQVR 1172 (1178)
Q Consensus 1127 dp~LF~-gTIreNI~~g~~~~asd----eei~~Al~~A~~~dfI~~LP~gl 1172 (1178)
++.||. -||+|||.|+.. ..+. +.+.++++..++.++..+.|..|
T Consensus 78 ~~~l~~~ltV~enl~~~l~-~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~L 127 (240)
T d2onka1 78 DYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAEKLGIAHLLDRKPARL 127 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCT-TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGS
T ss_pred chhhcccchhhHhhhhhhc-ccCHHHHHHHHHHHHHhcCcHhhhhCChhhC
Confidence 999996 599999999843 3443 45788899999999888877654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=9.4e-19 Score=184.77 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=105.7
Q ss_pred EEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhcc
Q 001041 1043 IELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMG 1122 (1178)
Q Consensus 1043 I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~Is 1122 (1178)
++++||+.+| +|+||||+|++||.+||+||+|||||||+++|.|++ |++|+|.++|.|+...+.+.++.+.+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7999998766 699999999999999999999999999999999986 68999999999999999999999999
Q ss_pred ccccccc-cccccHHHHHhcCCCCCCCHHHHHHHHHHcCchHHHhhccc
Q 001041 1123 LVSQEPV-LFNDTIRANIAYGKGGDATEAEIQAASEMANAHKFICSLQQ 1170 (1178)
Q Consensus 1123 iV~Qdp~-LF~gTIreNI~~g~~~~asdeei~~Al~~A~~~dfI~~LP~ 1170 (1178)
+++|+.. .|..++.+|+.++..+....+.+.++++..++.+++.+.|.
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 124 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTN 124 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGG
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChh
Confidence 9999986 57889999999875544456668889999988887765443
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.62 E-value=1e-17 Score=171.09 Aligned_cols=159 Identities=13% Similarity=0.066 Sum_probs=106.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHHHHHhcCCCCCCHHHHH
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIKDNIAYGKDDATTEEIR 493 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~~~~~~~~~~~~ 493 (1178)
+++|+||+|||||||++.|+|++++..|.+.+++.+....+...........++.+.++..+...+..++......+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ--- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH---
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcc---
Confidence 58999999999999999999999999999999886654333221111122223333333333322222211101111
Q ss_pred HHHHHhcHHHHHHhCCCCccchhcCCCCCCChHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc--C
Q 001041 494 VATELANAAKFIDKLPQGIDTLVGEHGTQLSGGQKQRIAIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMV--N 571 (1178)
Q Consensus 494 ~~~~~~~~~~~i~~~~~g~~t~~~~~g~~lSgGqkqri~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~--~ 571 (1178)
...+|+|+++|.++++++.++|+++++|||....+ ....+.+.+.+..+ +
T Consensus 79 --------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 79 --------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMHDPN 130 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHTCTT
T ss_pred --------------------------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHHHHhccCC
Confidence 01378999999999999999999999999854432 22344445555443 5
Q ss_pred CeEEEEecCcchhhccCEEEEEeCCEEEEecC
Q 001041 572 RTTVIVAHRLSTVRNADMIAVIHRGKIVEKGT 603 (1178)
Q Consensus 572 ~t~i~itH~~~~~~~~d~i~~l~~G~i~~~g~ 603 (1178)
+|+|+++|+.+....+|++..+++|++++.+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 79999999988888899999999999998654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=9.4e-11 Score=136.00 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=61.5
Q ss_pred CCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhc-CCeEEEEecCcchhhccCEEEEE
Q 001041 521 TQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAESEKVVQEALDRIMV-NRTTVIVAHRLSTVRNADMIAVI 593 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal----~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~-~~t~i~itH~~~~~~~~d~i~~l 593 (1178)
..||||||.+++||-.+ +.++++++||||+++||+.....+.+.|++... +.-+|+|||++..+..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45799999998876432 467889999999999999999999999987643 44699999999999999998765
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.99 E-value=1e-09 Score=121.27 Aligned_cols=76 Identities=24% Similarity=0.375 Sum_probs=65.6
Q ss_pred CCCChHHHHHHHHHHHh----ccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCEEEE--Ee
Q 001041 521 TQLSGGQKQRIAIARAI----LKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADMIAV--IH 594 (1178)
Q Consensus 521 ~~lSgGqkqri~lARal----~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~i~~--l~ 594 (1178)
..+|+|||+...++..+ ..+++++++|||-++|+|...+.+.+.+++..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 35899999998776653 3467899999999999999999999999998888899999999999999999866 55
Q ss_pred CC
Q 001041 595 RG 596 (1178)
Q Consensus 595 ~G 596 (1178)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.44 E-value=8.8e-09 Score=103.45 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=56.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGK 1143 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~ 1143 (1178)
|++|+||+|||||||++.|+++++|+.|.+.++|++....+.........+.++.+.++..+..++.+.++
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGS 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETT
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 69999999999999999999999999999999999887766665556677888888888887777766553
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.09 E-value=0.00011 Score=79.66 Aligned_cols=48 Identities=27% Similarity=0.464 Sum_probs=38.4
Q ss_pred EEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChH
Q 001041 1066 LKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLK 1115 (1178)
Q Consensus 1066 f~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~ 1115 (1178)
.-++.|..+.|+|+|||||||++++|+++.+|+.=-|.| .|..++.+.
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti--Ed~~El~l~ 208 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI--EDTEEIVFK 208 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE--ESSCCCCCS
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec--cchhhhhcc
Confidence 335667789999999999999999999999987666777 455566553
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.08 E-value=8.7e-05 Score=75.06 Aligned_cols=79 Identities=16% Similarity=0.273 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe--E----------EECCcccCCCChHHHHHhccccccccccccccHHH
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGH--I----------TLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRA 1137 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~--I----------~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIre 1137 (1178)
.|..+.|+||||||||||.+.|+.-++-..-. | .+||+|..=++.+...+.+. ++-++..+++..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~---~g~flE~~~~~g 77 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMIS---RDAFLEHAEVFG 77 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHH---TTCEEEEEEETT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhh---hhhheeEEEECC
Confidence 48899999999999999999887765421111 1 26899999999999987765 777777777766
Q ss_pred HHhcCCCCCCCHHHHHHHH
Q 001041 1138 NIAYGKGGDATEAEIQAAS 1156 (1178)
Q Consensus 1138 NI~~g~~~~asdeei~~Al 1156 (1178)
|. ||- +-+++.+++
T Consensus 78 ~~-YGt----~~~~v~~~~ 91 (205)
T d1s96a_ 78 NY-YGT----SREAIEQVL 91 (205)
T ss_dssp EE-EEE----EHHHHHHHH
T ss_pred ce-ecc----ccchHHHHH
Confidence 63 652 344454443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.02 E-value=0.00013 Score=72.35 Aligned_cols=51 Identities=31% Similarity=0.392 Sum_probs=38.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE----------EECCcccCCCChHHHHHhc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHI----------TLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I----------~IDG~dI~~i~l~~LR~~I 1121 (1178)
|+.+.|+||||||||||++.|..-++.-...+ ..||+|-.-++.+...+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~ 62 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 62 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhh
Confidence 88999999999999999999987664322222 3578888777777776543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.00 E-value=0.00018 Score=70.57 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=28.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~ 1107 (1178)
.|+.|.|+|++||||||++++|.+-+.. --+.+||-
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~d 38 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSD 38 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecHH
Confidence 5889999999999999999999886532 14556653
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.91 E-value=6.7e-06 Score=81.91 Aligned_cols=35 Identities=23% Similarity=0.146 Sum_probs=28.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
..+.|+||+|||||||++.+.+.+....+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35899999999999999999999877766665443
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.79 E-value=0.0021 Score=65.18 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=32.2
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHH-HHHh-cCCeEEEEecCcchhh
Q 001041 540 DPRILLLDEATSALDAESEKVVQEAL-DRIM-VNRTTVIVAHRLSTVR 585 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i-~~~~-~~~t~i~itH~~~~~~ 585 (1178)
+..++|+||...+=|++....+..++ +.+. .+.+++++||..+...
T Consensus 114 ~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 114 ENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp TTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 44699999999999998655443333 3322 3678899999876543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.66 E-value=0.00045 Score=69.83 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+|++++++|+||.|||||+|.|.+=.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchh
Confidence 58999999999999999999997643
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.58 E-value=0.0052 Score=64.72 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=26.9
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
-|+++.-=+.+|+++.|.|++|+|||||+.-+.-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4444443478999999999999999999876663
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0062 Score=62.16 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=29.4
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHH-HHHHh-c-CCeEEEEecCcch
Q 001041 540 DPRILLLDEATSALDAESEKVVQEA-LDRIM-V-NRTTVIVAHRLST 583 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~-i~~~~-~-~~t~i~itH~~~~ 583 (1178)
+..++|+||+..+=|+.....+..+ ++.+. + ++.+++.||....
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHH
Confidence 3459999999999999876655444 44443 2 3466777776543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.56 E-value=0.00058 Score=68.98 Aligned_cols=34 Identities=29% Similarity=0.445 Sum_probs=26.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
+|+.++++|+||+|||||++.|.+.....-|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 6999999999999999999999987766666664
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.55 E-value=0.00041 Score=68.86 Aligned_cols=60 Identities=23% Similarity=0.407 Sum_probs=44.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcccC-------------CCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHH
Q 001041 1074 VALVGESGSGKSTVVSLLQRFYD-------------PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRAN 1138 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y~-------------p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreN 1138 (1178)
|.|+|||||||+||++.|+.-++ |..|+ +||+|..-++.+...+.+. +.-++..+.+..|
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~~~~---~g~f~e~~~~~g~ 76 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSMIK---NNEFIEWAQFSGN 76 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHHHHH---TTCEEEEEEETTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCC--cCCccceeccHHHHHHHHh---cccceeeeEEccc
Confidence 78999999999999998865432 23443 4899998898888876655 6666666655554
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00038 Score=67.63 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPD 1098 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~ 1098 (1178)
.++|+|++|||||||++-|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999999876644
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.54 E-value=0.0034 Score=67.54 Aligned_cols=33 Identities=33% Similarity=0.523 Sum_probs=28.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~ 440 (1178)
-++.|.-+.|+|++||||||++++|++++++..
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 345567799999999999999999999998754
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.53 E-value=0.0019 Score=61.22 Aligned_cols=31 Identities=29% Similarity=0.205 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1178)
+++.|+|++||||||+++.|.... .|.+.++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence 478899999999999999886543 2445444
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.0007 Score=66.85 Aligned_cols=26 Identities=35% Similarity=0.463 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
|+++.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 89999999999999999999988775
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.38 E-value=0.00063 Score=66.61 Aligned_cols=28 Identities=32% Similarity=0.391 Sum_probs=25.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
++|-.|.|+|.+||||||+++.|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4789999999999999999999997653
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.31 E-value=0.0067 Score=62.28 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=24.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|+.+.|.|++|||||+|+.-++-..
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999997776543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.00061 Score=66.05 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
.++|+|++|||||||++.|.+.+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 68999999999999999999876543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.24 E-value=0.0012 Score=65.26 Aligned_cols=43 Identities=28% Similarity=0.374 Sum_probs=31.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc------------CCCCCeEEECCcccCCCCh
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFY------------DPDAGHITLDGVEIQKLQL 1114 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y------------~p~~G~I~IDG~dI~~i~l 1114 (1178)
=+|||+|++|+|||||++.|++-- .+..|.+.++|.++..++.
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~ 63 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDT 63 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeecc
Confidence 379999999999999999998632 2345678888876655543
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.021 Score=59.63 Aligned_cols=24 Identities=38% Similarity=0.547 Sum_probs=21.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
.||+++.|+|++|+|||||+..|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986665
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.11 E-value=0.0012 Score=64.16 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.|+++.|+|++||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999998865
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.11 E-value=0.00057 Score=69.25 Aligned_cols=34 Identities=29% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEE
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDPQAGEVL 444 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~ 444 (1178)
+|++++++|+||+|||||+++|.+.....-|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999998766667664
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.00036 Score=68.74 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=40.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
.|.|+||.|+|||||++.+.+.+....+.+.+.+.+........+...+.-+.|+...+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhh
Confidence 48999999999999999999999887777766665544333333333344445554433
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.03 E-value=0.0012 Score=63.93 Aligned_cols=36 Identities=22% Similarity=0.246 Sum_probs=26.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCC---CeEEECCcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDA---GHITLDGVE 1108 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~---G~I~IDG~d 1108 (1178)
.++|+|++|||||||+.-|.+.+.... |.|.-|+.+
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~ 41 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG 41 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc
Confidence 579999999999999998888776543 445445544
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.02 E-value=0.00058 Score=69.19 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I 1102 (1178)
+|+++.++|+||.|||||+|.|.+=.....|.|
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~v 128 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI 128 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccc
Confidence 588899999999999999999997554433433
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.01 E-value=0.0011 Score=64.22 Aligned_cols=34 Identities=29% Similarity=0.375 Sum_probs=27.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
.+.|+|++||||||+++.|.+-+. +...++|-++
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d~~ 37 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGDII 37 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCEEEehHHH
Confidence 589999999999999999998874 4556665444
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.00 E-value=0.0011 Score=65.87 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDP 1097 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p 1097 (1178)
.|||.|++|||||||++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5999999999999999999876653
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.97 E-value=0.0016 Score=63.24 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=25.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
|+|-+|.|.|++||||||+++.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 6788999999999999999999987654
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.90 E-value=0.0012 Score=64.73 Aligned_cols=25 Identities=44% Similarity=0.684 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.+|+|+|++|||||||++.|..-+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998763
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.016 Score=59.96 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
++..-+.+.||+|||||+++++|..++.
T Consensus 43 ~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 3445688999999999999999999874
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.86 E-value=0.0019 Score=62.77 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.+.|.|.|++||||||+++.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999999875
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.85 E-value=0.0015 Score=65.03 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
+|||||++|+|||||++.|.+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999864
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.79 E-value=0.0016 Score=62.89 Aligned_cols=27 Identities=22% Similarity=0.162 Sum_probs=23.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
..++|+|++|||||||+..|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999999887654
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.78 E-value=0.014 Score=56.52 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=21.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
++-+++.++|++||||||+.+.++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.77 E-value=0.0018 Score=61.34 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
+.|.|+|++||||||+++.|.+-. .|...++.-|+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d~~ 37 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRDDY 37 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEechHHH
Confidence 458899999999999999876532 35555554443
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.0029 Score=67.24 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.|||.|+|||||||+++.|..+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 579999999999999999988764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.75 E-value=0.0021 Score=63.07 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=25.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I 1102 (1178)
..|+|.|++||||||+++.|...+.....++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 5799999999999999999988776554443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.68 E-value=0.0021 Score=62.17 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=24.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+.+..+.|+|++||||||+++.|.+-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998866
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.66 E-value=0.0022 Score=62.40 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++|-++.|+|++||||||+.+.|..-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999998755
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.63 E-value=0.0027 Score=63.70 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
.|.++.|+||||||||||.+.|+...+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999999987654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.62 E-value=0.0019 Score=62.48 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
++.|+|++||||||+++.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997765
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.59 E-value=0.0022 Score=62.93 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
+|+|||++|+|||||++.|.+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~ 22 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTG 22 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 689999999999999999986
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0013 Score=65.18 Aligned_cols=27 Identities=44% Similarity=0.557 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.|-.|-|+|++||||||+++.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 577999999999999999999988654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.55 E-value=0.0016 Score=65.58 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.|.+||++||||||+++.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998775
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.52 E-value=0.0031 Score=61.09 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
.+++.|+|++||||||+.+.|...+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0027 Score=64.19 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.|||.|+|||||||+++.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999886654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0027 Score=61.32 Aligned_cols=27 Identities=37% Similarity=0.412 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+.+.++.|+|++||||||+.+.|...+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998765
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.46 E-value=0.0023 Score=63.05 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.|||||++++|||||++.|.+-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999763
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.0028 Score=60.55 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=21.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
..|.|+|++||||||++++|..-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.45 E-value=0.0042 Score=61.06 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+|+|+|++|+|||||+++|+|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999974
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.43 E-value=0.0034 Score=60.77 Aligned_cols=27 Identities=22% Similarity=0.482 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
|+|-.++|.|++||||||+.+.|...+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.42 E-value=0.0027 Score=62.12 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+.++|+|++|||||||++.|...+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.36 E-value=0.0032 Score=62.33 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
++||.|++|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999987654
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.36 E-value=0.0017 Score=65.42 Aligned_cols=43 Identities=35% Similarity=0.370 Sum_probs=33.7
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc-CC-CCCeEEECCcccCC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY-DP-DAGHITLDGVEIQK 1111 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y-~p-~~G~I~IDG~dI~~ 1111 (1178)
++|.+|=|.|.||||||||++.|.+-+ +. .--.+.+||-++++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 578899999999999999999987533 21 22368899988765
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.36 E-value=0.016 Score=60.31 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++..-+.+.||+|||||+|++++++.+
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 4455669999999999999999999987
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.36 E-value=0.0038 Score=61.73 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=24.9
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
|+|=++.|+||.||||||+++.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 678899999999999999999999766
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.34 E-value=0.0035 Score=60.74 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+|+|+|++|+|||||++.|.+-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998643
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0034 Score=60.06 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
|=+|+|||++|+|||||++.|.+-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.29 E-value=0.0041 Score=60.83 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=33.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccC-----C--------CCCeEEECCcccCCCChHHHHHhc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYD-----P--------DAGHITLDGVEIQKLQLKWLRQQM 1121 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~-----p--------~~G~I~IDG~dI~~i~l~~LR~~I 1121 (1178)
..+.|||||||||+||++.|++-++ + ..| .+||+|..=++.+..++.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~--E~~G~dY~Fvs~~~F~~~~ 64 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD--EENGKNYYFVSHDQMMQDI 64 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-----CCBTTTBEECCHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCc--cccCccceeeehhhhhhhe
Confidence 4589999999999999998885432 1 123 4578886556666666543
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.27 E-value=0.0035 Score=60.52 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
.++.|+|++||||||+++.|...++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998763
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.21 E-value=0.0028 Score=62.12 Aligned_cols=20 Identities=40% Similarity=0.694 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHhc
Q 001041 1074 VALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R 1093 (1178)
|||||++|+|||||++.|.+
T Consensus 4 VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 89999999999999999975
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.0029 Score=62.05 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
=+|+|||++++|||||++.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998753
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.21 E-value=0.004 Score=60.80 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
+|+|||++|+|||||++.|++-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.00059 Score=68.46 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=28.6
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+++.++.+.+| +++|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 356677777776 99999999999999999997443
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.0045 Score=60.33 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
.|+|+|++|+|||||++.|.|
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999986
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.09 E-value=0.0045 Score=61.35 Aligned_cols=30 Identities=33% Similarity=0.551 Sum_probs=25.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
..|.|+||+||||||+++.|..-| |-+.|+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 578999999999999999999876 445554
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.09 E-value=0.0044 Score=60.59 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=24.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
.+++|.|++||||||+++.|...+......
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~ 31 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVN 31 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCC
Confidence 689999999999999999998776554433
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.08 E-value=0.0042 Score=64.71 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
+|+|||+||+||||++|.|++-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5999999999999999999974
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.07 E-value=0.0042 Score=61.66 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
.++|+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999984
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.0044 Score=61.57 Aligned_cols=32 Identities=25% Similarity=0.421 Sum_probs=26.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
+-..+.|+||+||||||++++|..-| |-+.|+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 34569999999999999999999988 555665
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.006 Score=64.70 Aligned_cols=47 Identities=15% Similarity=0.349 Sum_probs=34.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCCCCCcccHH
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEPVLFTGSIK 477 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 477 (1178)
++||.|++||||||+.+.|...+.-..+. .++..+++|.++.+...+
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~-----------------~~v~~Is~D~F~~~~~~l 128 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPEH-----------------RRVELITTDGFLHPNQVL 128 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTC-----------------CCEEEEEGGGGBCCHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcCC-----------------CceEEEeeeeeECCchHH
Confidence 78999999999999999998876432111 158888888877654443
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.01 E-value=0.0045 Score=59.70 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|+|++||||||+.+.|...+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998655
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.99 E-value=0.0056 Score=59.81 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
...+.|+||||+||+||++.|+...
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC
Confidence 3579999999999999999998654
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.87 E-value=0.0048 Score=61.00 Aligned_cols=22 Identities=45% Similarity=0.537 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 001041 1074 VALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
|.|+||||||||||++.|+.-+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999986543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.82 E-value=0.0047 Score=60.24 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
-||+|||++|+|||||++.|.+=
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999764
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.79 E-value=0.0059 Score=58.12 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.|+||+||||||+.+.|...+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.79 E-value=0.0059 Score=58.42 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 699999999999999998864
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.76 E-value=0.0061 Score=57.82 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.|||++|+|||||++-|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 789999999999999998863
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.0042 Score=61.36 Aligned_cols=26 Identities=42% Similarity=0.622 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+|-++.++|++||||||+.+.|...+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998765
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.011 Score=56.90 Aligned_cols=35 Identities=34% Similarity=0.481 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCC-----eEEECCc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG-----HITLDGV 1107 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R-----~y~p~~G-----~I~IDG~ 1107 (1178)
||++||.+|+|||||++-+.. -|+|+-| .+.+||.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~ 48 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS 48 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccc
Confidence 689999999999999987664 4566655 3456664
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.01 Score=61.22 Aligned_cols=44 Identities=16% Similarity=0.394 Sum_probs=31.8
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
+.+++++||+=. +.......+.+.+.....+..+|++||+.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 567999999854 66666666777776655555678899988754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.0062 Score=61.31 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.0063 Score=60.83 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
+|+|||++|+|||||++.|.+
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~ 25 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTT 25 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999975
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.64 E-value=0.0075 Score=58.27 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+|+|+|++|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.014 Score=57.50 Aligned_cols=69 Identities=23% Similarity=0.282 Sum_probs=43.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCHHHH
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATEAEI 1152 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asdeei 1152 (1178)
+|.|+||.||||||+++.|..-| |-..|+--| -+|..+ -++...+.-.+.+.+.-|. ...|+.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~----g~~~i~~g~-------llR~~~---~~~~~~~~~~~~~~~~~~~--~v~d~~~ 66 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY----GYTHLSAGE-------LLRDER---KNPDSQYGELIEKYIKEGK--IVPVEIT 66 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEHHH-------HHHHHH---HCTTSTTHHHHHHHHHTTC--CCCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEcHHH-------HHHHHH---HhhhhhHHHHHHHHHhcCC--ccccchh
Confidence 58999999999999999998866 445554322 244422 2333444555666665442 4667766
Q ss_pred HHHHH
Q 001041 1153 QAASE 1157 (1178)
Q Consensus 1153 ~~Al~ 1157 (1178)
...++
T Consensus 67 ~~~~~ 71 (194)
T d1teva_ 67 ISLLK 71 (194)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 55544
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.63 E-value=0.0024 Score=61.14 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
+|||+|++|+|||||++.|.+-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999763
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.59 E-value=0.007 Score=58.01 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+.|+|++||||||+.++|..-+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997665
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.0071 Score=59.49 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccCC
Q 001041 415 AALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
++|+|||||||+||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999987653
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.54 E-value=0.0074 Score=57.32 Aligned_cols=21 Identities=24% Similarity=0.574 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
|++|||++|+|||||++.|.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 799999999999999999886
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.52 E-value=0.056 Score=53.61 Aligned_cols=26 Identities=35% Similarity=0.523 Sum_probs=16.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
...++++|||+|+||||.+--|...+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999886666554
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.43 E-value=0.0077 Score=58.84 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
.|+|||++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.42 E-value=0.0099 Score=58.53 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
|+|=.+.|+||+||||||+.+.|...+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.42 E-value=0.0086 Score=56.70 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|++|||||||++.+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999999875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.41 E-value=0.012 Score=56.37 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=27.6
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc-----ccCCCCCe-----EEECCccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQR-----FYDPDAGH-----ITLDGVEI 1109 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R-----~y~p~~G~-----I~IDG~dI 1109 (1178)
-||+|||.+|+|||||++.+.. -|+|+-|. +.+||.++
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~ 52 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEY 52 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEE
Confidence 3799999999999999998753 34455443 46777543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.0082 Score=57.20 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 412 GTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
|=+++++|++|+|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347899999999999999999974
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.38 E-value=0.0081 Score=58.06 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+.+-|+|++||||||+.++|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999997654
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.36 E-value=0.0093 Score=58.04 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+|+|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.35 E-value=0.0086 Score=58.43 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 001041 1074 VALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
|||||++.||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999863
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.32 E-value=0.0087 Score=59.03 Aligned_cols=22 Identities=45% Similarity=0.792 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.+||+|++||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999998654
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.28 E-value=0.0085 Score=66.52 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.|||+|+||+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998743
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.26 E-value=0.0066 Score=59.51 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
-|||+|++++|||||++.|.|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.22 E-value=0.01 Score=56.72 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+++|||++|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998863
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.0011 Score=66.38 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=27.8
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.++.+|...+| .+.|||++|||||||+.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 56667777776 8999999999999999999744
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.19 E-value=0.0097 Score=58.80 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
..+++|+||+||||||+.+.|...|
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998766
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.19 E-value=0.012 Score=60.20 Aligned_cols=24 Identities=38% Similarity=0.714 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 589999999999999999987653
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.17 E-value=0.013 Score=58.71 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=24.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|+.+.|.||+|||||||+.-++...
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998777543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.013 Score=58.80 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.9
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
+++|+.+-|.||+||||||++.-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.05 E-value=0.0083 Score=59.38 Aligned_cols=34 Identities=32% Similarity=0.527 Sum_probs=28.5
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEEC
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLD 1105 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~ID 1105 (1178)
++.+..|-|+||.||||||+++.|..-| |-..|+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 4667889999999999999999999876 445555
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.04 E-value=0.011 Score=57.52 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
++.|+|+.||||||++++|.--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997766
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.04 E-value=0.012 Score=57.17 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+|+|+|.+|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999983
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.03 E-value=0.011 Score=57.65 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+|.|+|+.||||||+++.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999877
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.98 E-value=0.011 Score=61.36 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.++|+|++|+|||||++.|+|.-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.95 E-value=0.012 Score=55.71 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999974
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.91 E-value=0.0097 Score=58.71 Aligned_cols=22 Identities=36% Similarity=0.469 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 001041 415 AALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++|+|||||||+||++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999987654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.88 E-value=0.011 Score=56.84 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
++.++|++||||||+.++|..-+.
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 477899999999999999987663
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.87 E-value=0.0099 Score=57.81 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.-+++|||++|||||||++.|.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.86 E-value=0.013 Score=57.94 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
-.|+|-|..||||||++++|.+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999998763
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.82 E-value=0.009 Score=58.25 Aligned_cols=21 Identities=33% Similarity=0.597 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 001041 415 AALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~ 435 (1178)
|||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.012 Score=60.20 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
++..|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 367899999999999999999998774
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.78 E-value=0.013 Score=59.98 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|+|+.|||||||++.|++..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.75 E-value=0.0099 Score=58.48 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
++.|.||+||||||+++.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998877
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.71 E-value=0.014 Score=55.74 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
||+|||++|+|||||++.|.+-+
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999987643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=0.014 Score=58.16 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
.|+|+|++|||||||++.|.+.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.68 E-value=0.012 Score=57.68 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.+.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999988775
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.67 E-value=0.021 Score=56.62 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=34.4
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCC-hHHHH
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQ-LKWLR 1118 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~-l~~LR 1118 (1178)
.+..+++|||+|+||||.+.=|++.+.-..-+|.+=..|.-... .+.|+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~ 54 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLS 54 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHh
Confidence 46789999999999999877777777655456766666654443 34443
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.64 E-value=0.012 Score=58.20 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=28.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1178)
++++.++.|+||+||||||+.+.|...| |-+.++
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 4567899999999999999999998866 555554
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.60 E-value=0.018 Score=55.68 Aligned_cols=40 Identities=25% Similarity=0.273 Sum_probs=30.2
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
++-+.|-+||++||||||+++-|+.- .|.+.|+.-++...
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D~~~~~ 51 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRDTLGSW 51 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHHHHCSH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh----cCCEEEchHHHHHH
Confidence 55578999999999999999988643 45677766555543
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.59 E-value=0.01 Score=58.72 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1178)
-.++.|+||+||||||+.+.|...| |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 4579999999999999999999877 555554
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.52 E-value=0.015 Score=57.93 Aligned_cols=21 Identities=43% Similarity=0.694 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
.|||.|.+||||||+++.|-.
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998753
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.51 E-value=0.015 Score=56.50 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
++.|+|+.||||||+++.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987764
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.50 E-value=0.035 Score=57.39 Aligned_cols=75 Identities=16% Similarity=0.278 Sum_probs=53.6
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe-EEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCC
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH-ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG 1145 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~-I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~ 1145 (1178)
=++.|..+-|.|++||||||++..+..-..-..|. |+||... .++.+.+++ +++=+ +|+.+-.+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~-~GvD~-----------d~il~~~~- 120 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK-LGVDT-----------DSLLVSQP- 120 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH-HTCCG-----------GGCEEECC-
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHHH-hCCCH-----------HHeEEecC-
Confidence 58999999999999999999998888777666665 7888876 455665544 56521 45555432
Q ss_pred CCCHHHHHHHHH
Q 001041 1146 DATEAEIQAASE 1157 (1178)
Q Consensus 1146 ~asdeei~~Al~ 1157 (1178)
.+-||+.+.++
T Consensus 121 -~~~E~~~~~~~ 131 (269)
T d1mo6a1 121 -DTGEQALEIAD 131 (269)
T ss_dssp -SSHHHHHHHHH
T ss_pred -CCHHHHHHHHH
Confidence 46677776654
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.50 E-value=0.009 Score=58.27 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
=+|+|+|++++|||||++.|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999998853
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.48 E-value=0.0065 Score=57.87 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+++++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.48 E-value=0.012 Score=63.08 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=24.2
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPD 1098 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~ 1098 (1178)
.-+|||+|+.|||||||++.|.+.+.-.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 4579999999999999999998877543
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.46 E-value=0.0095 Score=62.14 Aligned_cols=24 Identities=29% Similarity=0.610 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.|||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 699999999999999999887664
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.44 E-value=0.02 Score=50.81 Aligned_cols=43 Identities=12% Similarity=0.175 Sum_probs=32.7
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHH-hcccCCCCC-eEE-ECCcccCC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLL-QRFYDPDAG-HIT-LDGVEIQK 1111 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL-~R~y~p~~G-~I~-IDG~dI~~ 1111 (1178)
+.|=+|-+-|-||||||||+++| .+|.+-+.| .|. +||.+++.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~r 49 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTE 49 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCHH
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHHH
Confidence 45667889999999999999887 677775544 465 68877643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.023 Score=54.54 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
||++||.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 689999999999999998876543
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.38 E-value=0.017 Score=58.32 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
+|||-||+||||||++++|..=|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999987654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.03 Score=53.68 Aligned_cols=28 Identities=36% Similarity=0.578 Sum_probs=22.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh-----cccCCCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQ-----RFYDPDAG 1100 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~-----R~y~p~~G 1100 (1178)
||.+||.+|+|||||++-+. .-|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 68999999999999999876 35566645
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.34 E-value=0.029 Score=53.75 Aligned_cols=37 Identities=35% Similarity=0.641 Sum_probs=27.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh-----cccCCCCCe-----EEECCccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQ-----RFYDPDAGH-----ITLDGVEI 1109 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~-----R~y~p~~G~-----I~IDG~dI 1109 (1178)
||.+||.+|+|||||++.+. .-|+|+.|. +.+||.++
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~ 52 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV 52 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccc
Confidence 79999999999999999875 345666553 45777543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.33 E-value=0.018 Score=54.95 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 001041 415 AALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+.|+|++||||||+.+.|...+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998765
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.32 E-value=0.017 Score=55.55 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+.+.++|++||||||+.+.|...+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999998655
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.036 Score=53.13 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|.+|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988775
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.31 E-value=0.02 Score=55.31 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||++||++|+|||||++.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.28 E-value=0.022 Score=54.71 Aligned_cols=33 Identities=33% Similarity=0.378 Sum_probs=26.6
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
.|++--+.| .|.=|.|.|+||+||||++..|.+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 466666666 788899999999999999977653
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.25 E-value=0.018 Score=57.86 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.|+|-||.||||||+.++|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987775
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.16 E-value=0.019 Score=57.11 Aligned_cols=24 Identities=21% Similarity=0.464 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+++++|.+||||||+.+.|.+.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998663
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.15 E-value=0.026 Score=53.85 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|+|+.|||||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999998753
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.11 E-value=0.023 Score=58.77 Aligned_cols=85 Identities=25% Similarity=0.271 Sum_probs=55.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC--CCCCeEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCCCCCH-
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD--PDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGDATE- 1149 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~--p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~~asd- 1149 (1178)
.|||+|+.|||||||+..|+..-- ...|++. +|..+.+...++-.+++++-+.-..+--..-+-|+ ++.| .+.|
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~-iDtP-Gh~dF 80 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFL-LDAP-GYGDF 80 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEE-EECC-CSGGG
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEeecccccccccceeE-EccC-chhhh
Confidence 489999999999999999965432 2346654 67888899999999999987664443322233454 2322 2222
Q ss_pred -HHHHHHHHHcC
Q 001041 1150 -AEIQAASEMAN 1160 (1178)
Q Consensus 1150 -eei~~Al~~A~ 1160 (1178)
.|+..|++.+.
T Consensus 81 ~~e~~~al~~~D 92 (267)
T d2dy1a2 81 VGEIRGALEAAD 92 (267)
T ss_dssp HHHHHHHHHHCS
T ss_pred hhhhhhhhcccC
Confidence 34555655543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.05 E-value=0.022 Score=55.35 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.|+||+||||||+.+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997765
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.05 E-value=0.02 Score=56.99 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
.+|+|||+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3799999999999999999875
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.04 E-value=0.018 Score=56.55 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++.|.||+||||||+.+.|..-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998766
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.032 Score=53.59 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=26.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCCe-----EEECCcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAGH-----ITLDGVE 1108 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R-----~y~p~~G~-----I~IDG~d 1108 (1178)
||.|||.+|+|||||++-+.. -|+|+.|. +.+||..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 52 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRA 52 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccc
Confidence 699999999999999987643 34566554 3456643
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.98 E-value=0.021 Score=54.84 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.+||.+|+|||||++-|.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999997753
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=92.88 E-value=0.022 Score=56.00 Aligned_cols=21 Identities=43% Similarity=0.657 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
++||+|++||||||+++.|-.
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998853
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.84 E-value=0.031 Score=53.17 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=22.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R-----~y~p~~G 1100 (1178)
||++||..|+|||||++-+.. -|+|+-|
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~ 34 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 34 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCcccccee
Confidence 789999999999999998863 4455544
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.84 E-value=0.024 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++.|+||.||||||+.+.|...+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999876
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.82 E-value=0.022 Score=54.87 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.7
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
+.=||.+||+.|||||||++-|..
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEEECCCCCCHHHHHHHHhc
Confidence 334799999999999999998875
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.75 E-value=0.026 Score=56.03 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
..+++|||+|+||||.+.=|+..+.-..-+|.+=..|.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 47 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 47 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccc
Confidence 57999999999999877666766654434666645554
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.74 E-value=0.017 Score=61.88 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
.-.+||+|++|+|||||+..|.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 457999999999999999999876643
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.73 E-value=0.023 Score=59.08 Aligned_cols=33 Identities=36% Similarity=0.390 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
.-+.++||+|||||||+++|.+.+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 35889999999999999999998743 3455554
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.73 E-value=0.027 Score=62.35 Aligned_cols=28 Identities=32% Similarity=0.593 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAG 441 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G 441 (1178)
.++|+|++|+|||||+|+|.|.-.-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4899999999999999999996533334
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.71 E-value=0.026 Score=55.50 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++.|+||+||||||..+.|...+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=92.70 E-value=0.023 Score=55.19 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcc
Q 001041 415 AALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+||+|++.+|||||++.|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.68 E-value=0.021 Score=56.31 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
=+++|-|+.||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998765
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.66 E-value=0.025 Score=54.51 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 001041 413 TTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g 434 (1178)
=+++|||.+|||||||++.|.+
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999887
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.66 E-value=0.03 Score=53.88 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.66 E-value=0.02 Score=59.71 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.|||-|++|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999877543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.66 E-value=0.025 Score=54.07 Aligned_cols=23 Identities=43% Similarity=0.553 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.++|++||||||+.+.|...+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998765
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.64 E-value=0.026 Score=54.83 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
++.|.||.||||||+++.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998776
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.63 E-value=0.036 Score=53.13 Aligned_cols=26 Identities=35% Similarity=0.363 Sum_probs=21.7
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
--.|.=|.|+|+||+||||++..|.+
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34577899999999999999987654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.61 E-value=0.025 Score=53.89 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||++||.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986663
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.58 E-value=0.027 Score=62.37 Aligned_cols=52 Identities=15% Similarity=0.310 Sum_probs=35.7
Q ss_pred HHHHHhccCCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchhhccCE
Q 001041 532 AIARAILKDPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTVRNADM 589 (1178)
Q Consensus 532 ~lARal~~~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~~~~d~ 589 (1178)
+|..+|=++|||+++.|.. |+++.+...++ ...|+.|+..-|--+.+.-.+|
T Consensus 219 ~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a---a~tGhlV~tTlHa~~a~~~~~R 270 (401)
T d1p9ra_ 219 GLRAILRQDPDVVMVGEIR---DLETAQIAVQA---SLTGHLVMSTLHTNTAVGAVTR 270 (401)
T ss_dssp HHHHHGGGCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEECCSSSHHHHHH
T ss_pred HHHHHHhhcCCEEEecCcC---ChHHHHHHHHH---HhcCCeEEEEeccCchHhhhhh
Confidence 4666777899999999985 66766654433 3457888888787665544444
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.55 E-value=0.024 Score=54.62 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||++||++|+|||||++.|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.038 Score=52.78 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||.|||.+|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999999775
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.47 E-value=0.036 Score=58.94 Aligned_cols=41 Identities=17% Similarity=0.465 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL 1112 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i 1112 (1178)
|+.-+.++||||+|||+|++.|++.... --+.+|+-++.+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~s~~~~~ 88 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEV 88 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEGGGGSSC
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcccc--chhcccccccccc
Confidence 3456679999999999999999998753 3688888776433
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.44 E-value=0.032 Score=55.25 Aligned_cols=27 Identities=37% Similarity=0.735 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
++..+++|||+|+||||.+--|...+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999877776554
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.44 E-value=0.048 Score=52.15 Aligned_cols=28 Identities=32% Similarity=0.542 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R-----~y~p~~G 1100 (1178)
||++||..|+|||||++-+.. -|+|+-|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 789999999999999996542 2456666
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=92.41 E-value=0.02 Score=55.84 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+++.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999988764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.34 E-value=0.035 Score=52.11 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
..+||.++++.|+-||||||+.+.+++-+..
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3468999999999999999999999987744
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.32 E-value=0.031 Score=55.76 Aligned_cols=38 Identities=34% Similarity=0.346 Sum_probs=28.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCCCCC--CcEEECC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYDPQA--GEVLIDG 447 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~--G~i~i~g 447 (1178)
++|.++-++|.|||||||+.+.|...+.... -.+.+||
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldg 61 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 61 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcc
Confidence 5788999999999999999999875442111 2455666
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.03 Score=55.87 Aligned_cols=21 Identities=52% Similarity=0.654 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
.|||+|..||||||+++.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 589999999999999998753
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.29 E-value=0.03 Score=55.72 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 001041 414 TAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~ 433 (1178)
++||+|..||||||+++.+-
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999774
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.27 E-value=0.033 Score=62.01 Aligned_cols=41 Identities=22% Similarity=0.472 Sum_probs=28.8
Q ss_pred cEEEeeeEEeCCCCCCccccccceEEeeCCCEEEEEcCCCCCHHHHHHHH
Q 001041 1042 EIELHHVSFKYPSRPDVQVFRDLNLKIRAGKTVALVGESGSGKSTVVSLL 1091 (1178)
Q Consensus 1042 ~I~f~nVsf~Y~~~~~~~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL 1091 (1178)
.|+++|. .+|.+ ...|+| .++...+|+|++|||||||+.+|
T Consensus 5 ~l~l~NF-ks~~~------~~~i~f--~~~~l~~i~G~NGsGKS~ileAi 45 (427)
T d1w1wa_ 5 GLELSNF-KSYRG------VTKVGF--GESNFTSIIGPNGSGKSNMMDAI 45 (427)
T ss_dssp EEEEESC-SSCCS------EEEEEC--TTCSEEEEECSTTSSHHHHHHHH
T ss_pred EEEEeCe-eeeCC------CEEEeC--CCCCEEEEECCCCCCHHHHHHHH
Confidence 4777773 24531 112333 55568999999999999999998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.23 E-value=0.027 Score=56.09 Aligned_cols=39 Identities=21% Similarity=0.423 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVE 1108 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~d 1108 (1178)
+-..+++|||+|+||||.+.=|+..+.-..-+|.+=..|
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~D 48 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 48 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeec
Confidence 334789999999999987555554443233344443334
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.23 E-value=0.031 Score=59.30 Aligned_cols=21 Identities=38% Similarity=0.716 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
...|||++||||||++.+|.-
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHH
Confidence 789999999999999988843
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.033 Score=55.58 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
+.|-.|+|.|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999977553
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.15 E-value=0.033 Score=53.40 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|++|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998864
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.14 E-value=0.035 Score=56.46 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=23.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+.+.|.|++|||||||+.-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 88999999999999999999976653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.14 E-value=0.031 Score=54.36 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||++||.+|+|||||++-+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~ 23 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYV 23 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999999776
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.13 E-value=0.023 Score=57.96 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
++.+++|-|+.||||||+++.|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467999999999999999999998763
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.032 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++.|+||+||||||..+.|.-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.07 E-value=0.034 Score=54.54 Aligned_cols=24 Identities=38% Similarity=0.639 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
=++.|+|+.||||||+++.|..-|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999876
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.035 Score=54.11 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||+|||.+|+|||||++-|..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999988764
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.95 E-value=0.032 Score=53.24 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||++||.+|+|||||++.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~ 24 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLI 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 69999999999999998875
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=91.92 E-value=0.04 Score=60.91 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=49.5
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCe-EEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCC---
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQRFYDPDAGH-ITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKG--- 1144 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~-I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~--- 1144 (1178)
.++-.+-|.|||||||||.+..+++..+....+ |.|-. ++ ++.+... .++-+.+.+..=|..=++.-++.+|.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEd-Pi-E~~~~~~-~q~~v~~~~~~~~~~~l~~~lR~dPDvi~ 232 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED-PI-EFDIDGI-GQTQVNPRVDMTFARGLRAILRQDPDVVM 232 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES-SC-CSCCSSS-EEEECBGGGTBCHHHHHHHHGGGCCSEEE
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEecc-Cc-ccccCCC-CeeeecCCcCCCHHHHHHHHHhhcCCEEE
Confidence 456679999999999999999999976544445 44421 11 2222111 12223333333366667777776632
Q ss_pred -CCCCHHH-HHHHHHHc
Q 001041 1145 -GDATEAE-IQAASEMA 1159 (1178)
Q Consensus 1145 -~~asdee-i~~Al~~A 1159 (1178)
++..|.| ...|++.|
T Consensus 233 igEiRd~~ta~~a~~aa 249 (401)
T d1p9ra_ 233 VGEIRDLETAQIAVQAS 249 (401)
T ss_dssp ESCCCSHHHHHHHHHHH
T ss_pred ecCcCChHHHHHHHHHH
Confidence 2344444 34444444
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.92 E-value=0.039 Score=56.15 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=23.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
=+++|+.+-|.|++||||||++.-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 38999999999999999999997554
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=91.91 E-value=0.036 Score=55.70 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|-||+||||||+.+.|...+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999876
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.89 E-value=0.058 Score=54.76 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=38.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCCChHHHHHhccccccccccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKLQLKWLRQQMGLVSQEPVLF 1131 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF 1131 (1178)
.+-+.||+|+||||++++|.+-+... .+.++|.+.. ...++++.+.-..+...+|
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 91 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN--IHVTSGPVLV--KQGDMAAILTSLERGDVLF 91 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC--EEEEETTTCC--SHHHHHHHHHHCCTTCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC--cccccCcccc--cHHHHHHHHHhhccCCchH
Confidence 37899999999999999999998866 4456777664 3455555554444444444
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.88 E-value=0.037 Score=55.00 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
.|+|+|++|+|||||++.+.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999986
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.036 Score=52.93 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.+||.+|+|||||++-+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999988754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.86 E-value=0.038 Score=57.29 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=29.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
-+-++||+||||||+++.|++-+. .+-+.|++-++++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d~~~~ 70 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTFKQ 70 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh--cceEEEecHHHHH
Confidence 478999999999999999999875 3467777655443
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=91.84 E-value=0.047 Score=52.32 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=26.8
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
.+|.-.+.+ .|.=+.|+|+||+||||+...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456655555 788999999999999999987764
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.036 Score=53.48 Aligned_cols=21 Identities=48% Similarity=0.803 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||++||+.|+|||||++-+..
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999997643
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.83 E-value=0.04 Score=54.97 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=24.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
++|.+++|.|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999887653
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.82 E-value=0.048 Score=51.96 Aligned_cols=32 Identities=31% Similarity=0.333 Sum_probs=24.4
Q ss_pred cccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1061 FRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1061 L~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
|++ ++-.-.|.=|.|+|+||+||||++..|.+
T Consensus 6 ~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHG-VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EES-EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEE-EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 444 34445688899999999999999866553
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.051 Score=52.43 Aligned_cols=36 Identities=19% Similarity=0.394 Sum_probs=25.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc----cCCCC-----CeEEECCcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF----YDPDA-----GHITLDGVE 1108 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~----y~p~~-----G~I~IDG~d 1108 (1178)
|++++|.+|+|||||++-+..= ++|+. ..|.+||.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~ 51 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQT 51 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceE
Confidence 7999999999999999966541 22322 246778854
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.75 E-value=0.037 Score=52.67 Aligned_cols=20 Identities=40% Similarity=0.576 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
+|.++|++|+|||||++.|.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~ 23 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIA 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999664
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.71 E-value=0.039 Score=52.48 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|++|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.71 E-value=0.041 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.|.||+||||||+.+.|..-+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.70 E-value=0.03 Score=55.61 Aligned_cols=39 Identities=31% Similarity=0.510 Sum_probs=22.7
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
-..+++|||+|+||||.+.=|+..+.-...+|-+=..|.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt 50 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADV 50 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeec
Confidence 356999999999999876666666653434555544443
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.056 Score=51.89 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
||.+||.+|+|||||++.+.+-
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.64 E-value=0.062 Score=51.41 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.61 E-value=0.061 Score=51.48 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=24.8
Q ss_pred cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 401 IFSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 401 ~l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
.+|.--+ --.|.=+.|+|+||+||||+...|..
T Consensus 4 ~lH~~~v-~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLV-DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEE-EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEE-EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3444333 33688899999999999999977664
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.55 E-value=0.039 Score=52.57 Aligned_cols=21 Identities=33% Similarity=0.620 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.+||.+|+|||||++.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998763
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=0.045 Score=54.53 Aligned_cols=27 Identities=19% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+|.+++|-|+-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987653
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.50 E-value=0.043 Score=53.20 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=24.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG 1106 (1178)
++.|.|+.||||||+++.|.--| |-+.|+.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~~ 33 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLAT 33 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEec
Confidence 57799999999999999998876 4555554
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.48 E-value=0.025 Score=58.90 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
++||+|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999877653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.43 E-value=0.044 Score=53.27 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|.+|||||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988774
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.048 Score=52.44 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.+||++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 499999999999999987754
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=91.41 E-value=0.039 Score=53.12 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998865
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.042 Score=52.39 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.045 Score=52.72 Aligned_cols=21 Identities=43% Similarity=0.721 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.31 E-value=0.04 Score=57.13 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.6
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
=+.|-.||+++|+|++|+|||||+..+.+-..
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 36788999999999999999999999998554
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.044 Score=52.66 Aligned_cols=20 Identities=25% Similarity=0.566 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 68999999999999999876
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.24 E-value=0.029 Score=55.80 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.|||+|+.+||||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999743
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.24 E-value=0.043 Score=55.47 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.|||+|+..||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3999999999999999999864
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.22 E-value=0.034 Score=53.93 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHh
Q 001041 1072 KTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
=||.+||++|+|||||++-|.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 379999999999999999875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.048 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
++++||++|+|||||++.+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988875
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.18 E-value=0.047 Score=51.88 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.+||.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.18 E-value=0.055 Score=54.59 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHH
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLI 432 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l 432 (1178)
+++|+++.|.|++|+|||+|+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 889999999999999999998543
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.16 E-value=0.051 Score=54.11 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
+|..|+|-|+-||||||++++|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987553
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=91.16 E-value=0.049 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++|-||+||||||+.+.|..-|
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 78999999999999999999876
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.14 E-value=0.044 Score=52.52 Aligned_cols=21 Identities=29% Similarity=0.662 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.+||.+|+|||||++-+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998874
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.14 E-value=0.051 Score=53.19 Aligned_cols=23 Identities=48% Similarity=0.732 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.++|+||.||||||+.+.|.--|
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999866
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.12 E-value=0.049 Score=52.32 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
++++||++|+|||||++.+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 589999999999999998775
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.10 E-value=0.05 Score=51.73 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999998765
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.08 E-value=0.049 Score=52.89 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||+|||.+|+|||||++-+.
T Consensus 7 KivviG~~~vGKTsli~~~~ 26 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYT 26 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999999998765
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.04 E-value=0.051 Score=56.05 Aligned_cols=54 Identities=19% Similarity=0.320 Sum_probs=40.6
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHHhccc
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGL 1123 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~l~~LR~~Isi 1123 (1178)
=|++|..+-|.|++|||||||+..++.-..-..| -++||... .++.+. -+.+++
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~--~~~~~~-a~~~Gv 104 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH--ALDPIY-ARKLGV 104 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHH-HHHTTC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc--ccCHHH-HHHhCC
Confidence 5899999999999999999999888777654444 48888776 344443 345565
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.04 E-value=0.051 Score=55.56 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=22.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~ 433 (1178)
+++|+.+.|.|++|||||||..-++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8899999999999999999986554
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.03 E-value=0.041 Score=57.03 Aligned_cols=56 Identities=9% Similarity=0.217 Sum_probs=27.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCC--CCCeEEECCcccCCCChHHHHHhccccccccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDP--DAGHITLDGVEIQKLQLKWLRQQMGLVSQEPV 1129 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p--~~G~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~ 1129 (1178)
.|||||+.|||||||+..|+-.--. ..|++. ||.-+.+...++..+.+++-..-..
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~-~~~~~~D~~~~E~~r~~si~~~~~~ 65 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVH-EGAATMDFMEQERERGITITAAVTT 65 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC--------------------CCCCCCCSEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccccccee-cCceEEeccHHHHhcCCccccceee
Confidence 4799999999999999999633221 235553 5666777777887788887655443
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.05 Score=55.64 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+.+.|.|++|||||+|..-++-
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 88999999999999999999987764
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.03 E-value=0.051 Score=55.74 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
..+.+.||+|+||||++++|++.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.052 Score=55.49 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=23.5
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
|++|+.+-|.|++||||||++.-++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 8999999999999999999998775
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.048 Score=51.98 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 001041 413 TTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g 434 (1178)
-+++|+|++|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3799999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.97 E-value=0.05 Score=51.86 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||+|||.+|+|||||++-+.
T Consensus 6 Ki~lvG~~~vGKTsli~rl~ 25 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFV 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999999876
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.073 Score=50.76 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
++++||++|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999988875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.91 E-value=0.04 Score=58.64 Aligned_cols=26 Identities=15% Similarity=0.450 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+.-+.++||+|||||.|.++|.+.+.
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHhhccc
Confidence 34567899999999999999999763
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.90 E-value=0.058 Score=54.40 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=27.1
Q ss_pred eeCCCEEEEEcCCCCCHHHHHH-HHhcccCCCCCeEEE
Q 001041 1068 IRAGKTVALVGESGSGKSTVVS-LLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~-lL~R~y~p~~G~I~I 1104 (1178)
+++|+.+-|.|++|+||||++. ++..........+.+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~ 60 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF 60 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCccc
Confidence 8999999999999999999985 444333333334544
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.89 E-value=0.055 Score=52.35 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEEC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLID 446 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~ 446 (1178)
++.|+||.||||||+.+.|.-.+ |-+.++
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEe
Confidence 46789999999999999998766 555554
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=90.86 E-value=0.09 Score=53.95 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=40.1
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCCC----ChHHHHHhccccccc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQKL----QLKWLRQQMGLVSQE 1127 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~i----~l~~LR~~IsiV~Qd 1127 (1178)
+++...+-+.||+|+|||++++.|++-+... -+.+++-++.+. +...+|+-+....|.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~ 103 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVEMFVGVGASRVRDMFEQAKKA 103 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTTSCCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcCCC--EEEEEhHHhhhcchhHHHHHHHHHHHHHHHc
Confidence 3344568899999999999999999988643 577887776442 234466655544443
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.76 E-value=0.055 Score=53.83 Aligned_cols=20 Identities=50% Similarity=0.606 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 001041 414 TAALVGQSGSGKSTVISLIE 433 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~ 433 (1178)
++||+|..||||||.++.+.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 68999999999999999875
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.74 E-value=0.045 Score=52.50 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||++||.+|+|||||++.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999998664
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.73 E-value=0.057 Score=54.92 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+++.|.|++|+|||||+.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 88999999999999999999876653
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.06 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++++|.+|+|||||++.+.+.-
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 58999999999999999988753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.70 E-value=0.053 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999987753
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.69 E-value=0.054 Score=54.69 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
++||+|++.||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999974
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.69 E-value=0.055 Score=51.53 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.|||.+|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987763
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.68 E-value=0.039 Score=53.08 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=9.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.+||.+|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999986664
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=90.67 E-value=0.052 Score=53.76 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=23.8
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I 1104 (1178)
+..+.+|||+|+||||.+.=|+..+.-..-+|.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~l 43 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLL 43 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 4568999999999998877777666433224443
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.65 E-value=0.06 Score=52.28 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|++|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999998875
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.62 E-value=0.058 Score=54.86 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=23.5
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
+++|+.+-|.|++|+||||++.-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999988775
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.60 E-value=0.06 Score=50.46 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=27.9
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCC
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p 1097 (1178)
..+||..|.+.|+=||||||+++.+.+-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4579999999999999999999999988754
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.50 E-value=0.06 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.2
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHH
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLL 1091 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL 1091 (1178)
+++|+.+-|.|++||||||++.-+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 899999999999999999998754
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.50 E-value=0.056 Score=51.93 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.|||.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999987653
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.45 E-value=0.052 Score=53.76 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
-.++++|||+|+||||.+.-|...+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999998877776554
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=90.44 E-value=0.055 Score=53.73 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=20.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 410 SSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 410 ~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++..++++|||+|+||||.+.-|.-.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999876666544
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.43 E-value=0.063 Score=53.61 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=25.0
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCC
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFYDP 1097 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y~p 1097 (1178)
+|..|+|-|.-||||||++++|....+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6899999999999999999999876653
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.41 E-value=0.062 Score=53.67 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+|.+++|-|+-||||||+++.|...+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999987664
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.41 E-value=0.058 Score=51.64 Aligned_cols=21 Identities=24% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=90.40 E-value=0.048 Score=55.43 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQ 439 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~ 439 (1178)
.+.+.||+|+||||++++|...+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 47899999999999999999887544
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.34 E-value=0.06 Score=51.07 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998875
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.32 E-value=0.088 Score=50.19 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.058 Score=51.77 Aligned_cols=20 Identities=25% Similarity=0.567 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||++||..|+|||||++-+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 49999999999999999776
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.22 E-value=0.1 Score=49.66 Aligned_cols=28 Identities=32% Similarity=0.577 Sum_probs=22.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R-----~y~p~~G 1100 (1178)
||.+||.+|+|||||++-+.. -|+|+-|
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 38 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE 38 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCccee
Confidence 689999999999999997763 4555544
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.059 Score=51.88 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
-||.+||.+|+|||||++-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3799999999999999987764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.091 Score=50.28 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+++++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58999999999999999988754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.18 E-value=0.056 Score=57.55 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.-++||.|+.|||||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999999765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.17 E-value=0.074 Score=54.00 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=24.1
Q ss_pred eeCCCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1068 IRAGKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
+++|+.+-|.|++||||||++.-++.=
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 899999999999999999998766554
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.15 E-value=0.068 Score=55.54 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++||.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998776543
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.13 E-value=0.1 Score=53.71 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=25.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccCCCCC
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYDPDAG 1100 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~p~~G 1100 (1178)
..+-|+||+|+||||+++.|++.+....+
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 47899999999999999999998865444
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.12 E-value=0.069 Score=50.61 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|..|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=0.069 Score=50.77 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988775
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.05 E-value=0.06 Score=52.82 Aligned_cols=27 Identities=41% Similarity=0.709 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc---CCCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY---DPDAG 1100 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y---~p~~G 1100 (1178)
|+.|+|.+|+|||||++-+ +|. .|+-|
T Consensus 4 KivllG~~~vGKTsll~r~-~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM-RIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH-HHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHH-hcCCCCCCeee
Confidence 7899999999999999987 443 47777
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.03 E-value=0.051 Score=54.94 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.+.||+|+||||++++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999999876
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.98 E-value=0.072 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|++|+|||||++.+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.93 E-value=0.071 Score=51.64 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|.+|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999987764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.92 E-value=0.069 Score=51.00 Aligned_cols=21 Identities=38% Similarity=0.662 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||++||+.|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999997644
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.072 Score=50.87 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||.+||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999999887
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=89.86 E-value=0.077 Score=55.18 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=27.2
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
-|+++.-=+.||+.+.|.|+||+||||++.-++.
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3554443379999999999999999999877764
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.78 E-value=0.055 Score=55.03 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
-+.+.||+|+||||+++++.+.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999999999999999998763
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.77 E-value=0.077 Score=50.48 Aligned_cols=21 Identities=29% Similarity=0.543 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988774
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.77 E-value=0.074 Score=54.77 Aligned_cols=41 Identities=20% Similarity=0.288 Sum_probs=32.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc-EEECCe
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGI 448 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~-i~i~g~ 448 (1178)
=+++|.++-|.||+|||||||+.-++.......|. +++|..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 47899999999999999999998888766555554 566654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.70 E-value=0.13 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|.+|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998775
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.071 Score=51.28 Aligned_cols=21 Identities=19% Similarity=0.465 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|.+|+|||||++.+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988775
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.63 E-value=0.08 Score=50.35 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.61 E-value=0.073 Score=52.16 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||+|||+.|+|||||++-+.
T Consensus 8 KivvvG~~~vGKTsli~~l~ 27 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFS 27 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 49999999999999999766
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.57 E-value=0.099 Score=53.79 Aligned_cols=29 Identities=24% Similarity=0.503 Sum_probs=24.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccCCCCC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFYDPQA 440 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~~~~~ 440 (1178)
...+.|.||+|+||||+++.+...+....
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 35789999999999999999999875443
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.55 E-value=0.048 Score=56.99 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCCHHHHHHHHhc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
=+|||||-.-+|||||+++|.+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~ 24 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTK 24 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHC
Confidence 3899999999999999999985
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.53 E-value=0.12 Score=52.74 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=27.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~ 1110 (1178)
.+-|.||+|+||||++++|++-...+ -+.+++.+.+
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~~~--~~~~~~~~~~ 89 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELGYD--ILEQNASDVR 89 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTCE--EEEECTTSCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhh--hhccccccch
Confidence 36799999999999999999976532 3455555443
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.081 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.48 E-value=0.081 Score=54.60 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999887654
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.40 E-value=0.06 Score=54.50 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 001041 415 AALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+.+.||+|+||||+++++++.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999865
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.39 E-value=0.079 Score=56.35 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.-.++|+|+.|+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999988654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.38 E-value=0.08 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
||.+||..|+|||||++-|..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.32 E-value=0.081 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.29 E-value=0.086 Score=50.25 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987664
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.28 E-value=0.081 Score=54.63 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1070 AGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1070 ~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+..+.|+|++|+|||||++-+++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999999877644
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=89.26 E-value=0.2 Score=51.53 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=51.3
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCC-eEEECCcccCCCChHHHHHhccccccccccccccHHHHHhcCCCC
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAG-HITLDGVEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGG 1145 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G-~I~IDG~dI~~i~l~~LR~~IsiV~Qdp~LF~gTIreNI~~g~~~ 1145 (1178)
=|+.|..+-|-|++|||||||+..++.-..-..| -++||... .++.+ +.+++++=+ +|+.+.++
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~-~a~~~Gvd~-----------d~i~~~~~- 117 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPV-YARALGVNT-----------DELLVSQP- 117 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHH-HHHHTTCCG-----------GGCEEECC-
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHH-HHHHhCCCc-----------hhEEEEcC-
Confidence 4789999999999999999999888877654444 58888774 45555 445677632 45656532
Q ss_pred CCCHHHHHHHH
Q 001041 1146 DATEAEIQAAS 1156 (1178)
Q Consensus 1146 ~asdeei~~Al 1156 (1178)
.+-||..+.+
T Consensus 118 -~~~E~~~~~~ 127 (268)
T d1xp8a1 118 -DNGEQALEIM 127 (268)
T ss_dssp -SSHHHHHHHH
T ss_pred -CCHHHHHHHH
Confidence 3555555544
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.16 E-value=0.061 Score=51.60 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=9.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.07 E-value=0.085 Score=50.52 Aligned_cols=21 Identities=24% Similarity=0.493 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.07 E-value=1.4 Score=45.12 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
..+++|+|..|.|||||++.+....
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999987653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.00 E-value=0.093 Score=50.04 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988874
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=88.99 E-value=0.078 Score=54.89 Aligned_cols=31 Identities=19% Similarity=0.335 Sum_probs=27.5
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
=+.|-+|++.+|+|++|+|||||+..|.+-.
T Consensus 37 l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 37 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999999988754
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.98 E-value=0.12 Score=48.97 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=24.4
Q ss_pred ccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 001041 402 FSGFSISISSGTTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 402 l~~i~l~i~~g~~~~ivG~~GsGKStl~~~l~g 434 (1178)
++.- +-.-.|.=+.|+|+||+||||+...+..
T Consensus 6 ~H~~-~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGV-LVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESE-EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEE-EEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4443 3334688999999999999999877664
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.94 E-value=0.089 Score=51.04 Aligned_cols=20 Identities=20% Similarity=0.423 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||.|||.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 69999999999999998765
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.88 E-value=0.062 Score=51.43 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|++|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.84 E-value=0.063 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 001041 413 TTAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g 434 (1178)
=+++++|++|+|||||++.+.+
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3688999999999999998754
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=88.78 E-value=0.092 Score=53.31 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
.|||.|.-||||||+++.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999954
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.78 E-value=0.074 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.+-|.||+|+||||+++++++-
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3789999999999999999874
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.77 E-value=0.083 Score=55.69 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.77 E-value=0.095 Score=49.80 Aligned_cols=20 Identities=25% Similarity=0.513 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999775
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.77 E-value=0.13 Score=49.74 Aligned_cols=30 Identities=30% Similarity=0.515 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeE
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHI 1102 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I 1102 (1178)
||.+||..|+|||||++-+..-.-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 789999999999999998777667777743
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.74 E-value=0.11 Score=53.51 Aligned_cols=49 Identities=24% Similarity=0.367 Sum_probs=34.3
Q ss_pred EEEEcCCCCcHHHHHHHHhccC--CCCCCcEEECCeecCCCCHHHHhcceEE
Q 001041 415 AALVGQSGSGKSTVISLIERFY--DPQAGEVLIDGINLKEFQLQWIRKKIGL 464 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~--~~~~G~i~i~g~~~~~~~~~~~r~~i~~ 464 (1178)
++|+|+.|||||||+-+|+..- ....|++. +|..+.+..+++..+++++
T Consensus 5 v~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti 55 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTV 55 (267)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCC
T ss_pred EEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeE
Confidence 7999999999999999996432 12346553 5666667777766655543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=88.66 E-value=0.1 Score=53.25 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
-+.+.||+|||||+|+++|.+++
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 47899999999999999999876
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=88.62 E-value=0.078 Score=50.77 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhc
Q 001041 1073 TVALVGESGSGKSTVVSLLQR 1093 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R 1093 (1178)
+|.+||++|+|||||++.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998864
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.62 E-value=0.098 Score=51.25 Aligned_cols=22 Identities=23% Similarity=0.492 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 001041 415 AALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+||+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.59 E-value=0.1 Score=51.46 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
+++|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987653
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.57 E-value=0.092 Score=55.95 Aligned_cols=22 Identities=32% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
+|||||..-+|||||+++|.+-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999764
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.50 E-value=0.089 Score=54.63 Aligned_cols=33 Identities=24% Similarity=0.290 Sum_probs=25.5
Q ss_pred ccccceEEeeCCCEEEEEcCCCCCHHHHHHHHhccc
Q 001041 1060 VFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1060 vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+|++++ +|=-.|+|+|+.++|||||++.|++-.
T Consensus 24 ~l~~~~---~~v~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 24 ILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp HHHTCC---SBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHcCC---CCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence 455553 233479999999999999999999754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.48 E-value=0.097 Score=51.21 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|+.|+|||||++-+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 489999999999999998774
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.46 E-value=0.088 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
-+.+.||+|||||+++++|....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 57899999999999999999865
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.40 E-value=0.1 Score=51.45 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
.|+|-|.-||||||++++|...++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999986553
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.40 E-value=0.11 Score=49.55 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.28 E-value=0.1 Score=50.27 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=21.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhc-----ccCCCCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQR-----FYDPDAG 1100 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R-----~y~p~~G 1100 (1178)
||.+||.+|+|||||++-+.. -|+|+-|
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~ 36 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCcee
Confidence 789999999999999986643 3556544
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=88.10 E-value=0.15 Score=51.62 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=26.8
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1074 VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
+-+.||+|+||||+++++.+-+... ....+|.++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~~~--~~~~~~~~~~~ 73 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELGVN--LRVTSGPAIEK 73 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCC--EEEEETTTCCS
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC--eEeccCCcccc
Confidence 5699999999999999999977643 34445555433
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.09 E-value=0.11 Score=55.00 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.++|||...||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.04 E-value=0.12 Score=49.10 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
++++||.+|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999987764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.98 E-value=0.088 Score=53.15 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 001041 1074 VALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
+-|.||+|+||||+++++++-
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999999986
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.85 E-value=0.11 Score=55.01 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
.+++||..+|||||++++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999954
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.82 E-value=0.11 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.++|||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999953
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=87.79 E-value=0.11 Score=57.73 Aligned_cols=37 Identities=16% Similarity=0.487 Sum_probs=28.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
-|-+|||||||||-|++.|+++.+.- =+..|+....+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fTe 87 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFTE 87 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceeee
Confidence 46899999999999999999988753 45555555544
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.79 E-value=0.13 Score=54.55 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=30.6
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
...+-++||||+|||.|++.|.+.+.. --|++|.-+..+
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~s~~~~ 90 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDMSEYME 90 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEGGGCSS
T ss_pred ceEEEEECCCcchhHHHHHHHHhhccC--CeeEeccccccc
Confidence 335789999999999999999999863 367777655543
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.75 E-value=0.12 Score=50.45 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHh
Q 001041 1073 TVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
||++||.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 79999999999999987664
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.72 E-value=0.12 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
.|||+|...+|||||++.|.+.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEeccCCcHHHHHHHHHhh
Confidence 3799999999999999999864
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.62 E-value=0.17 Score=52.02 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=34.9
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHhcc-cCCCCCeEEECCcccCC
Q 001041 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQRF-YDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1064 isf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~-y~p~~G~I~IDG~dI~~ 1111 (1178)
.=+.+-.||+++|.|.+|+|||||+.-+.+= -.-+.+.+.+-++.-+.
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~iGer~ 109 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT 109 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEEESCCH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEEeccCh
Confidence 3468889999999999999999998887764 33344544454555443
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.56 E-value=0.11 Score=54.63 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
=++||||...+|||||+++|.+-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999864
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.42 E-value=0.14 Score=52.66 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
-+.+.||+|||||++++++.++.
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 48899999999999999999975
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=87.40 E-value=0.087 Score=47.96 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=21.3
Q ss_pred eeCCCEEEEEcCCCCCHHHHH-HHHhccc
Q 001041 1068 IRAGKTVALVGESGSGKSTVV-SLLQRFY 1095 (1178)
Q Consensus 1068 I~~Ge~vaIVG~SGSGKSTL~-~lL~R~y 1095 (1178)
+++|+.+-|++|||||||..+ ..+.+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 467999999999999999665 3444444
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.35 E-value=0.14 Score=49.13 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|.+|+|||||++.+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999997776
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=87.35 E-value=0.11 Score=51.21 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=20.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhccC
Q 001041 412 GTTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 412 g~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
+..+++|||+|+||||.+.-|...+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999887776655
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.13 Score=49.79 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++|+|.+|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999987664
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.15 E-value=0.13 Score=50.76 Aligned_cols=22 Identities=18% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
-++|+|+.++|||||+..|++.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 3799999999999999999753
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.13 E-value=0.098 Score=50.01 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
++.++|++|+|||||++.+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988753
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.09 E-value=0.14 Score=52.94 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh---ccCCCCCCcEEECCeecCCCCHHHHhcceE
Q 001041 414 TAALVGQSGSGKSTVISLIE---RFYDPQAGEVLIDGINLKEFQLQWIRKKIG 463 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~---g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~ 463 (1178)
-++|+|+.|||||||+-.|+ |..+. .|++. +|..+.+..+++..++++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~s 58 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGIT 58 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc-cccee-cCceEEeccHHHHhcCCc
Confidence 37999999999999998886 44332 35553 344444555554444443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=87.05 E-value=0.16 Score=52.55 Aligned_cols=30 Identities=37% Similarity=0.476 Sum_probs=24.9
Q ss_pred cccccceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1059 QVFRDLNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1059 ~vL~~isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
+++.|+ .||+.+-|+|++|+||||++.-|+
T Consensus 21 ~li~G~----~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 21 YVLPNM----VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEETTE----ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHhCCc----cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 466763 469999999999999999987664
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.02 E-value=0.14 Score=49.27 Aligned_cols=21 Identities=24% Similarity=0.559 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999976654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.94 E-value=0.11 Score=56.04 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=26.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
++++..+.++||+|+|||++.++|++++.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46788999999999999999999999874
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.93 E-value=0.11 Score=52.16 Aligned_cols=44 Identities=16% Similarity=0.338 Sum_probs=28.3
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
+.+++++||.-. +.......+...+......+..+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 467999999653 33334445555666655566777888877654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.76 E-value=0.15 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcc
Q 001041 413 TTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
.++||+|+-||||||+.+.|...
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 37999999999999999998653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.58 E-value=0.13 Score=53.23 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+|+|+||.++|||||++.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999999843
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.53 E-value=0.19 Score=51.54 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=26.5
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcc
Q 001041 406 SISISSGTTAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 406 ~l~i~~g~~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
=+.+-+||+.+|.|++|+|||||+.-+..-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 367899999999999999999998777654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.44 E-value=0.15 Score=49.58 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 001041 414 TAALVGQSGSGKSTVISLIER 434 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g 434 (1178)
+++++|.+|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999977664
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.31 E-value=0.12 Score=51.85 Aligned_cols=44 Identities=18% Similarity=0.381 Sum_probs=29.8
Q ss_pred CCCEEEEeCCCCCCCHHhHHHHHHHHHHHhcCCeEEEEecCcchh
Q 001041 540 DPRILLLDEATSALDAESEKVVQEALDRIMVNRTTVIVAHRLSTV 584 (1178)
Q Consensus 540 ~~~illlDe~ts~lD~~~~~~i~~~i~~~~~~~t~i~itH~~~~~ 584 (1178)
+.+++++||.- .+.......+.+.+.+..+...+++++++...+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 34699999974 455666667777777665555556677776544
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=86.20 E-value=0.12 Score=53.27 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=32.8
Q ss_pred eEEeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCc
Q 001041 1065 NLKIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGV 1107 (1178)
Q Consensus 1065 sf~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~ 1107 (1178)
=+.|-+||+++|+|++|+|||+|+..+.+-..-+...+-+-++
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~~i 103 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAI 103 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEE
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeeeee
Confidence 4688899999999999999999998766655545545444443
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.98 E-value=0.13 Score=51.41 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 001041 1074 VALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
+-+.||+|+||||++++|.+-
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 679999999999999998764
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.93 E-value=0.19 Score=49.52 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
-++|+|...+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 479999999999999999998653
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.87 E-value=0.15 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
..|-+.||+|+|||++++.|+.-..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhhccc
Confidence 4688999999999999999997654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.70 E-value=0.21 Score=49.80 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=23.4
Q ss_pred CEEEEEcCCCCcHHHHHHHH-hccCCCCCC
Q 001041 413 TTAALVGQSGSGKSTVISLI-ERFYDPQAG 441 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l-~g~~~~~~G 441 (1178)
-++.++|.+|+|||||++-+ .+...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 37899999999999999765 455667766
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.47 E-value=0.19 Score=51.78 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=25.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
-+++...+-+.||+|+|||++++.+++-+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 355666699999999999999999988654
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.46 E-value=0.18 Score=51.82 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=36.0
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc-EEECCeecCCCCHHHH
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGINLKEFQLQWI 458 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~-i~i~g~~~~~~~~~~~ 458 (1178)
=++.|.++-|.||+|||||||+..++.......|. ++||... .++++.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~a 102 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVYA 102 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHHHH
Confidence 37899999999999999999998888876655554 4556532 3444433
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.40 E-value=0.15 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHhcc
Q 001041 1074 VALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
+-+.||+|+||||++++|++-
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 679999999999999999874
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=85.39 E-value=0.15 Score=56.59 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=26.1
Q ss_pred CEEEEEcCCCCCHHHHHH-HHhcccCCCCCeEEECC
Q 001041 1072 KTVALVGESGSGKSTVVS-LLQRFYDPDAGHITLDG 1106 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~-lL~R~y~p~~G~I~IDG 1106 (1178)
..+.|+|+||||||++++ ++..+.....+-|.||.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 458999999999999885 56566655555666664
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=85.28 E-value=0.17 Score=56.11 Aligned_cols=45 Identities=16% Similarity=0.448 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCC
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1178)
=+.++||||||||-|++.|.++++.- -+.+|+.... ..|||..|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecch
Confidence 47899999999999999999988542 4555553322 488888876
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.27 E-value=0.17 Score=51.92 Aligned_cols=50 Identities=20% Similarity=0.316 Sum_probs=37.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCc-EEECCeecCCCCHHHHh
Q 001041 408 SISSGTTAALVGQSGSGKSTVISLIERFYDPQAGE-VLIDGINLKEFQLQWIR 459 (1178)
Q Consensus 408 ~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~-i~i~g~~~~~~~~~~~r 459 (1178)
-++.|.++-|.||+|||||||+..++.......|. |+||... .++++.++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~ 106 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK 106 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHH
Confidence 47899999999999999999988887766666665 5566543 34555544
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.17 E-value=0.18 Score=54.46 Aligned_cols=42 Identities=17% Similarity=0.164 Sum_probs=33.1
Q ss_pred EeeCCCEEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccC
Q 001041 1067 KIRAGKTVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQ 1110 (1178)
Q Consensus 1067 ~I~~Ge~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~ 1110 (1178)
.+|++..+-++||.|+||||+++.|+++..-. -|.+++-|.+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~--~i~in~s~~r 191 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGK--ALNVNLPLDR 191 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCE--EECCSSCTTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcCCC--EEEEECcchh
Confidence 45788899999999999999999999998632 3446666543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.91 E-value=0.21 Score=48.61 Aligned_cols=28 Identities=36% Similarity=0.514 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh--ccCCCCCC
Q 001041 414 TAALVGQSGSGKSTVISLIE--RFYDPQAG 441 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~--g~~~~~~G 441 (1178)
++.++|.+|+|||||++-+. -.+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68999999999999998872 23446656
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.70 E-value=0.21 Score=49.85 Aligned_cols=38 Identities=29% Similarity=0.419 Sum_probs=26.3
Q ss_pred CEEEEEcCCCCCHHHHHHHHh-cccCCCCCe----EEECCccc
Q 001041 1072 KTVALVGESGSGKSTVVSLLQ-RFYDPDAGH----ITLDGVEI 1109 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~-R~y~p~~G~----I~IDG~dI 1109 (1178)
-||.++|.+|+|||||++-+. .=+.|+-|- +.++++.+
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~ 49 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNF 49 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCCeEEEEEEECcEEE
Confidence 378999999999999998763 233466663 33455443
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.67 E-value=0.27 Score=47.39 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCCc
Q 001041 414 TAALVGQSGSGKSTVISLIERFYDPQAGE 442 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~~~~~G~ 442 (1178)
++.++|..|+|||||++-+.....|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 68999999999999998776555566663
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=84.48 E-value=0.2 Score=45.57 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=17.3
Q ss_pred CCEEEEEcCCCCCHHHHHHHHh
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
.+..-|++|||||||+++-.+.
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHH
Confidence 4556679999999999886554
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.31 E-value=0.27 Score=51.87 Aligned_cols=38 Identities=24% Similarity=0.411 Sum_probs=29.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhccc-CCCCCeEEECCcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFY-DPDAGHITLDGVEIQ 1110 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y-~p~~G~I~IDG~dI~ 1110 (1178)
.+-++||||+|||.+++.|.+.. .....-+.+|..+..
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~ 93 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 93 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCC
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 46799999999999999999965 334456778765544
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.74 E-value=0.23 Score=50.15 Aligned_cols=25 Identities=36% Similarity=0.603 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1072 KTVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1072 e~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
+.++|=|.-||||||++++|..-+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3689999999999999999987664
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=83.51 E-value=0.14 Score=54.79 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhccCCC
Q 001041 411 SGTTAALVGQSGSGKSTVISLIERFYDP 438 (1178)
Q Consensus 411 ~g~~~~ivG~~GsGKStl~~~l~g~~~~ 438 (1178)
.|.-+.++|+.|+|||||++.+.+++++
T Consensus 27 ~~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 27 GIGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GGCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 3456899999999999999999999876
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.50 E-value=0.24 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.1
Q ss_pred CCEEEEEcCCCCCHHHHHHHHhcc
Q 001041 1071 GKTVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1071 Ge~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
...|+|+|..|.|||||++.+++-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999988754
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.36 E-value=0.14 Score=52.80 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 001041 414 TAALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
.+.++||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45677999999999999999876
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.29 E-value=0.23 Score=50.09 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhccCC
Q 001041 413 TTAALVGQSGSGKSTVISLIERFYD 437 (1178)
Q Consensus 413 ~~~~ivG~~GsGKStl~~~l~g~~~ 437 (1178)
++++|-|.-||||||+++.|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997663
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.17 E-value=0.25 Score=51.80 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
++||||.+-||||||+++|.+-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999975
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.13 E-value=0.22 Score=52.43 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=27.4
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECC
Q 001041 407 ISISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDG 447 (1178)
Q Consensus 407 l~i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g 447 (1178)
...++| .+.++||+|||||.|.++|.+++.-...-+.++|
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~ 158 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRF 158 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEh
Confidence 444444 5666899999999999999997632222344444
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.02 E-value=0.27 Score=48.00 Aligned_cols=22 Identities=23% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 001041 415 AALVGQSGSGKSTVISLIERFY 436 (1178)
Q Consensus 415 ~~ivG~~GsGKStl~~~l~g~~ 436 (1178)
++|+|...+|||||+..|++..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 7999999999999999998743
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=82.99 E-value=0.3 Score=49.53 Aligned_cols=35 Identities=29% Similarity=0.371 Sum_probs=27.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCccc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEI 1109 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI 1109 (1178)
-+-+.||+|+|||++++.|.+-+... -+.|++-++
T Consensus 44 giLl~GppGtGKT~la~aia~~~~~~--~~~i~~~~l 78 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEARVP--FITASGSDF 78 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHcCCC--EEEEEhHHh
Confidence 37899999999999999999876432 455665554
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.80 E-value=0.24 Score=50.28 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 001041 1074 VALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+-|+||.|+||||+++++++-+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999998753
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.79 E-value=0.32 Score=49.76 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccC
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYD 1096 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~ 1096 (1178)
-+-+.||+|+|||++++.+.+...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eeEEecCCCCCchHHHHHHHHHhC
Confidence 488999999999999999999654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.77 E-value=0.27 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 001041 414 TAALVGQSGSGKSTVISLIERF 435 (1178)
Q Consensus 414 ~~~ivG~~GsGKStl~~~l~g~ 435 (1178)
.|||||.+-+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999984
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.63 E-value=0.2 Score=50.58 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=19.0
Q ss_pred eCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1069 RAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1069 ~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
-.|+-+.|++|||||||+...+..
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~~ 79 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAMS 79 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHHH
Confidence 357889999999999998655443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.25 E-value=0.18 Score=45.62 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=21.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHH-HHHhccC
Q 001041 409 ISSGTTAALVGQSGSGKSTVI-SLIERFY 436 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~-~~l~g~~ 436 (1178)
+++|+.+.|++|+|||||..+ ..+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 467999999999999999554 3444443
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.22 E-value=0.23 Score=51.14 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHhccc
Q 001041 1074 VALVGESGSGKSTVVSLLQRFY 1095 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y 1095 (1178)
+.|+||+|+||||+++.+++-+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5567999999999999999864
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=80.94 E-value=0.36 Score=47.76 Aligned_cols=42 Identities=12% Similarity=0.271 Sum_probs=28.1
Q ss_pred ccCCCEEEEeCCCCCC-CHHhHHHHHHHHHHHh-cCCeEEEEec
Q 001041 538 LKDPRILLLDEATSAL-DAESEKVVQEALDRIM-VNRTTVIVAH 579 (1178)
Q Consensus 538 ~~~~~illlDe~ts~l-D~~~~~~i~~~i~~~~-~~~t~i~itH 579 (1178)
+++.+++++||.=.-. +...+..+...+.... .++.+|+.+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~ 138 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 138 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecC
Confidence 5689999999985433 4556777777777655 3555555444
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.52 E-value=0.27 Score=50.70 Aligned_cols=29 Identities=17% Similarity=0.298 Sum_probs=25.2
Q ss_pred ceEEeeCCCEEEEEcCCCCCHHHHHHHHh
Q 001041 1064 LNLKIRAGKTVALVGESGSGKSTVVSLLQ 1092 (1178)
Q Consensus 1064 isf~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1092 (1178)
.=+.|-.|||++|+|++|+|||||+.-+.
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 34788999999999999999999987555
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=80.43 E-value=0.47 Score=50.97 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=26.6
Q ss_pred EEEEcCCCCCHHHHHHHHhcccCCCCCeEEECCcccCC
Q 001041 1074 VALVGESGSGKSTVVSLLQRFYDPDAGHITLDGVEIQK 1111 (1178)
Q Consensus 1074 vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~IDG~dI~~ 1111 (1178)
+-++||||+|||-|++.|+++.+. .-|++|-....+
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~~--~~ir~D~s~~~e 106 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLDI--PIAISDATSLTE 106 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGCC-
T ss_pred eeeeCCCCccHHHHHHHHHhhccc--ceeehhhhhccc
Confidence 578899999999999999998742 355555444433
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.41 E-value=0.36 Score=46.65 Aligned_cols=22 Identities=32% Similarity=0.514 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhcc
Q 001041 1073 TVALVGESGSGKSTVVSLLQRF 1094 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~ 1094 (1178)
||.++|.+|+|||||++-+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999887544
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=80.16 E-value=0.72 Score=47.10 Aligned_cols=57 Identities=21% Similarity=0.223 Sum_probs=37.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhccCCCCCCcEEECCeecCCCCHHHHhcceEEEcCCC
Q 001041 409 ISSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLQWIRKKIGLVSQEP 469 (1178)
Q Consensus 409 i~~g~~~~ivG~~GsGKStl~~~l~g~~~~~~G~i~i~g~~~~~~~~~~~r~~i~~v~Q~~ 469 (1178)
.++-.++.+.||.++|||+++.+|..++ +.-|.+ ++ .-+...++.+..+--.+-+||
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~-~~~~f~l~~l~~k~~~~~~e~ 157 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NW-TNENFPFNDCVDKMVIWWEEG 157 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CT-TCSSCTTGGGSSCSEEEECSC
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc--cc-cCCCccccccCCCEEEEEeCC
Confidence 3566789999999999999999999988 433332 22 123444555554433444555
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.15 E-value=0.6 Score=49.28 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=26.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhcccCCCCCeEEE
Q 001041 1073 TVALVGESGSGKSTVVSLLQRFYDPDAGHITL 1104 (1178)
Q Consensus 1073 ~vaIVG~SGSGKSTL~~lL~R~y~p~~G~I~I 1104 (1178)
+|.|=|.-|+||||+++.|..-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57889999999999999999988765544444
|