Citrus Sinensis ID: 001116
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1152 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LKW9 | 1146 | Sodium/hydrogen exchanger | yes | no | 0.980 | 0.985 | 0.657 | 0.0 | |
| Q3YL57 | 756 | Sodium/hydrogen exchanger | no | no | 0.636 | 0.969 | 0.691 | 0.0 | |
| Q6UJY2 | 1175 | Sodium/hydrogen exchanger | yes | no | 0.460 | 0.451 | 0.243 | 2e-35 | |
| Q8BUE1 | 797 | Sodium/hydrogen exchanger | no | no | 0.333 | 0.481 | 0.260 | 5e-30 | |
| P26434 | 717 | Sodium/hydrogen exchanger | yes | no | 0.333 | 0.535 | 0.260 | 5e-30 | |
| Q6AI14 | 798 | Sodium/hydrogen exchanger | yes | no | 0.343 | 0.496 | 0.248 | 8e-28 | |
| Q01345 | 759 | Na(+)/H(+) exchanger beta | N/A | no | 0.335 | 0.509 | 0.251 | 2e-27 | |
| Q4G0N8 | 1177 | Sodium/hydrogen exchanger | no | no | 0.416 | 0.407 | 0.236 | 3e-27 | |
| Q61165 | 820 | Sodium/hydrogen exchanger | no | no | 0.345 | 0.485 | 0.251 | 1e-25 | |
| P48763 | 813 | Sodium/hydrogen exchanger | no | no | 0.322 | 0.456 | 0.240 | 2e-25 |
| >sp|Q9LKW9|NHX7_ARATH Sodium/hydrogen exchanger 7 OS=Arabidopsis thaliana GN=NHX7 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1467 bits (3797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 755/1149 (65%), Positives = 912/1149 (79%), Gaps = 20/1149 (1%)
Query: 11 LPYRTLEE--EQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVPYTVALLII 68
+ YR LEE + S SS E +P DAV+FVG+SLVLGIA RHLLRGTRVPYTVALL+I
Sbjct: 9 MAYRFLEEATDSSSSSSSSKLESSPVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVI 68
Query: 69 GIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQ 128
GIALGSLEYG H LGKIG GIR+W IDP+LLLAVFLPALLFESSF+MEVHQIKRCL Q
Sbjct: 69 GIALGSLEYGAKHNLGKIGHGIRIWNEIDPELLLAVFLPALLFESSFSMEVHQIKRCLGQ 128
Query: 129 MILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKK 188
M+LLA PGV+IST LG+ +K+TFPY+W WKTSLLLGGLLSATDPVAVVALLKELGASKK
Sbjct: 129 MVLLAVPGVLISTACLGSLVKVTFPYEWDWKTSLLLGGLLSATDPVAVVALLKELGASKK 188
Query: 189 LNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASV 248
L+TIIEGESLMNDGTAIVV+QLF +M +G++ W +IIKFL +V+LGAVG+GLAFGIASV
Sbjct: 189 LSTIIEGESLMNDGTAIVVFQLFLKMAMGQNSDWSSIIKFLLKVALGAVGIGLAFGIASV 248
Query: 249 LWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQ 308
+WL FIFNDTVIEI LT+AVSY A++TAQE A SGVLTVMTLGMFYAA ARTAFKG+SQ
Sbjct: 249 IWLKFIFNDTVIEITLTIAVSYFAYYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQ 308
Query: 309 QSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLF 368
+SLH+FWEMVAYIANTLIFILSGVVIAEGIL +DKI GNSW +L LLY+++Q+SR+
Sbjct: 309 KSLHHFWEMVAYIANTLIFILSGVVIAEGILDSDKI-AYQGNSWRFLFLLYVYIQLSRVV 367
Query: 369 VVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFV 428
VVG LYP+L FGYGL+WKE+IILVWSGLRGAVAL+LSLSVK+SSG S I+ ETGTLF+
Sbjct: 368 VVGVLYPLLCRFGYGLDWKESIILVWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFL 426
Query: 429 FFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDE 488
FFTGGIVFLTLIVNGSTTQ++L LL MD L A K+RIL+YTKYEMLN A + F DLGDDE
Sbjct: 427 FFTGGIVFLTLIVNGSTTQFVLRLLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDE 486
Query: 489 ELGPVDWPTVKRYIRCLNDLEG-VPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWA 547
ELGP DWPTV+ YI L EG + HPH+ S+ G SLDP +L+DIR+R LNGVQA YW
Sbjct: 487 ELGPADWPTVESYISSLKGSEGELVHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWE 545
Query: 548 MLDEGRITQTAANILMQSVDEGIDLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLIT 607
MLDEGRI++ ANILMQSVDE +D S LCDWRGLK +V+FPNYY FL + + P+KL+T
Sbjct: 546 MLDEGRISEVTANILMQSVDEALDQVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVT 605
Query: 608 YFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVR 667
YF VERLE AC I AAFLRAH IARQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR
Sbjct: 606 YFAVERLESACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVR 665
Query: 668 VNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPP 727
+FPQVL VVKT+QVTYSVLNHL+ YI+NLEKVGLLEEKE+ HLHDAVQ+ LK+LLRNPP
Sbjct: 666 SSFPQVLRVVKTKQVTYSVLNHLLGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNPP 725
Query: 728 LVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGV 787
+VK PK+SD+I++HPL LPP+ EPL+ S KE MKL GVTLY+EGSKP+G+WLI +G+
Sbjct: 726 IVKLPKLSDMITSHPLSVALPPAFCEPLKHSKKEPMKLRGVTLYKEGSKPTGVWLIFDGI 785
Query: 788 VKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILR 847
VKW SK + N HSLHP F+HGS LGLYEVL GKPY+ D++TDS+VLCFFI+S+KILS L+
Sbjct: 786 VKWKSKILSNNHSLHPTFSHGSTLGLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQ 844
Query: 848 SDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIA-ERSKMTTCLRGEIIEIPYHC 906
SD ++DFLWQ+SA+ L ++L PQIFE + MQ++RAL++ E SK+TT + GE IEI +
Sbjct: 845 SDSTIDDFLWQESALVLLKLLRPQIFESVAMQELRALVSTESSKLTTYVTGESIEIDCNS 904
Query: 907 IGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFR-SAETSGVEAVSFSHQGSCYLVETR 965
IG LLEGF+K G++EELI+ PAAL PS GN SF S+E SG+ VSFS Q + Y+VETR
Sbjct: 905 IGLLLEGFVKPVGIKEELISSPAALSPSNGNQSFHNSSEASGIMRVSFSQQATQYIVETR 964
Query: 966 ARVIIFDIAAFEADKAVVRRTSSLF---SHSSDQPHKSLSREHGNLMSWPEHFYKARQQK 1022
AR IIF+I AF AD+ + RR SSL S SSDQ +S +EH LMSWPE+ Y +QQ
Sbjct: 965 ARAIIFNIGAFGADRTLHRRPSSLTPPRSSSSDQLQRSFRKEHRGLMSWPENIYAKQQQ- 1023
Query: 1023 QNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRR 1082
E ++ SLS RAMQLSIFG+MV+V RRS SF +L + +P + +
Sbjct: 1024 ----EINKTTLSLSERAMQLSIFGSMVNVYRRSVSFGGIYNNKLQDNLLYKKLPLNPAQG 1079
Query: 1083 LVSVRSEGATTVREKLEVSRSTGQIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDS 1142
LVS +SE + +++LE + Q+P + + + + SSD+ ++ ++VRIDS
Sbjct: 1080 LVSAKSESSIVTKKQLETRKHACQLPL---KGESSTRQNTMVESSDEEDEDEGIVVRIDS 1136
Query: 1143 PSLLSFPQD 1151
PS + F D
Sbjct: 1137 PSKIVFRND 1145
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Acts in electroneutral exchange of protons for cations such as Na(+) or Li(+) across plasma membrane. Involved in Na(+) and K(+) homeostasis. Required for cytoplasmic Na(+) and Li(+) detoxification by secreting them from the cytoplasm to the extracellular space. Regulates Na(+) content of the xylem sap. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3YL57|NHX8_ARATH Sodium/hydrogen exchanger 8 OS=Arabidopsis thaliana GN=NHX8 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q6UJY2|SL9C1_MOUSE Sodium/hydrogen exchanger 10 OS=Mus musculus GN=Slc9c1 PE=1 SV=3 | Back alignment and function description |
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| >sp|Q8BUE1|SL9A4_MOUSE Sodium/hydrogen exchanger 4 OS=Mus musculus GN=Slc9a4 PE=2 SV=1 | Back alignment and function description |
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| >sp|P26434|SL9A4_RAT Sodium/hydrogen exchanger 4 OS=Rattus norvegicus GN=Slc9a4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q6AI14|SL9A4_HUMAN Sodium/hydrogen exchanger 4 OS=Homo sapiens GN=SLC9A4 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q01345|NHEB_ONCMY Na(+)/H(+) exchanger beta OS=Oncorhynchus mykiss PE=2 SV=1 | Back alignment and function description |
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| >sp|Q4G0N8|SL9C1_HUMAN Sodium/hydrogen exchanger 10 OS=Homo sapiens GN=SLC9C1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q61165|SL9A1_MOUSE Sodium/hydrogen exchanger 1 OS=Mus musculus GN=Slc9a1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P48763|SL9A2_RAT Sodium/hydrogen exchanger 2 OS=Rattus norvegicus GN=Slc9a2 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1152 | ||||||
| 225424514 | 1141 | PREDICTED: sodium/hydrogen exchanger 7 [ | 0.986 | 0.996 | 0.758 | 0.0 | |
| 261873420 | 1141 | salt overly sensitive 1 [Vitis vinifera] | 0.986 | 0.996 | 0.759 | 0.0 | |
| 224111392 | 1129 | sodium proton exchanger [Populus trichoc | 0.970 | 0.990 | 0.756 | 0.0 | |
| 99029169 | 1145 | Na+/H+ antiporter [Populus euphratica] | 0.993 | 0.999 | 0.742 | 0.0 | |
| 255561775 | 1143 | sodium/hydrogen exchanger plant, putativ | 0.977 | 0.985 | 0.736 | 0.0 | |
| 449464876 | 1144 | PREDICTED: sodium/hydrogen exchanger 7-l | 0.986 | 0.993 | 0.742 | 0.0 | |
| 380508732 | 1144 | plasmalemma Na+/H+ antiporter [Cucumis s | 0.986 | 0.993 | 0.741 | 0.0 | |
| 302028367 | 1153 | SOS1 [Bruguiera gymnorhiza] | 0.982 | 0.981 | 0.727 | 0.0 | |
| 384368002 | 1143 | uncharacterized protein LOC100789429 [Gl | 0.958 | 0.965 | 0.740 | 0.0 | |
| 269986105 | 1153 | plasma membrane Na+/H+ antiporter [Zygop | 0.977 | 0.976 | 0.710 | 0.0 |
| >gi|225424514|ref|XP_002285248.1| PREDICTED: sodium/hydrogen exchanger 7 [Vitis vinifera] gi|297737560|emb|CBI26761.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 1743 bits (4513), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 874/1152 (75%), Positives = 995/1152 (86%), Gaps = 15/1152 (1%)
Query: 1 MESVSEGLLQLPYRTLEEEQKSGGGSSPSEGNPTDAVIFVGISLVLGIACRHLLRGTRVP 60
M SV EG+ PYR L EE S S NPTDAVIFVGI LV+GIACR LLRGTRVP
Sbjct: 1 MGSVLEGVF--PYRALGEESSS------SSSNPTDAVIFVGICLVMGIACRQLLRGTRVP 52
Query: 61 YTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVH 120
YTVALLI+GIALGSLE+GTS++LGKIGDGIRLWA+IDP+LLLAVFLPALLFESSF+MEVH
Sbjct: 53 YTVALLILGIALGSLEHGTSNKLGKIGDGIRLWANIDPNLLLAVFLPALLFESSFSMEVH 112
Query: 121 QIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALL 180
QIKRC+VQM++LAGPGV++STF LG+ALK TFPYDWSWKTSLLLGGLLSATDPVAVVALL
Sbjct: 113 QIKRCMVQMLILAGPGVLVSTFCLGSALKFTFPYDWSWKTSLLLGGLLSATDPVAVVALL 172
Query: 181 KELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMVLGKSFGWGAIIKFLAQVSLGAVGMG 240
KELGA KKL+TIIEGESLMNDGTAIVVYQLF+QMVLGKSF +GA++KFL QVSLGAVG+G
Sbjct: 173 KELGAGKKLSTIIEGESLMNDGTAIVVYQLFYQMVLGKSFNFGAVVKFLTQVSLGAVGIG 232
Query: 241 LAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADVSGVLTVMTLGMFYAAVAR 300
LAFG+ASVLWLGFIFNDTVIEI LTLAVSYIA+FTAQEGADVSGVL VMTLGMFYAAVA+
Sbjct: 233 LAFGLASVLWLGFIFNDTVIEITLTLAVSYIAYFTAQEGADVSGVLAVMTLGMFYAAVAK 292
Query: 301 TAFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIFQNHGNSWGYLILLYI 360
TAFKG+ QQSLH+FWEMVAYIANTLIFILSGVVIAEG+LG++ IF+NHGNSWGYLILLY+
Sbjct: 293 TAFKGDGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSNDIFKNHGNSWGYLILLYV 352
Query: 361 FVQVSRLFVVGTLYPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSSGGSSLIT 420
+VQVSR+ VVG YP L FGYGL+WKEAIIL+WSGLRGAVALSLSLSVKR+S SS ++
Sbjct: 353 YVQVSRIVVVGVSYPFLWYFGYGLDWKEAIILIWSGLRGAVALSLSLSVKRASDSSSYLS 412
Query: 421 SETGTLFVFFTGGIVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKT 480
SETGTLFVFFTGGIVFLTLIVNGSTTQ+ILHLL+MDKLS KRRILDYTKYEMLN A +
Sbjct: 413 SETGTLFVFFTGGIVFLTLIVNGSTTQFILHLLNMDKLSEVKRRILDYTKYEMLNKALEA 472
Query: 481 FGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASETGDSLDPTNLRDIRIRLLNG 540
FGDLGDDEELGP DWPTVKRYI LND+EG +HPH+ E+ ++L PTNL+DIRIRLLNG
Sbjct: 473 FGDLGDDEELGPADWPTVKRYIASLNDVEGGLVHPHTVYESDNNLYPTNLKDIRIRLLNG 532
Query: 541 VQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNE-LCDWRGLKDNVSFPNYYKFLQTS 599
VQAAYW MLDEGRITQT AN+LMQSVDE +DL S+E LCDW+GLK NV+FPNYY+FLQTS
Sbjct: 533 VQAAYWRMLDEGRITQTTANLLMQSVDEALDLVSDEPLCDWKGLKANVNFPNYYRFLQTS 592
Query: 600 MFPQKLITYFTVERLEFACSICAAFLRAHKIARQQLHDFIGDSGIASVVIEESKVEGEDA 659
+ PQKLITYFTVERLE AC ICAAFLRAH+IAR+QL DFIGDS IAS VI ES+ EGE+A
Sbjct: 593 ICPQKLITYFTVERLESACYICAAFLRAHRIARRQLLDFIGDSEIASTVINESEAEGEEA 652
Query: 660 RKFLEDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKEMLHLHDAVQSDL 719
RKFLEDVRV FPQVL VVKTRQVT+SVL HLIDY+QNLEK+GLLEEKEM HLHDAVQ+DL
Sbjct: 653 RKFLEDVRVTFPQVLRVVKTRQVTHSVLLHLIDYVQNLEKIGLLEEKEMFHLHDAVQTDL 712
Query: 720 KRLLRNPPLVKFPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSG 779
K+LLRNPPLVK P++ D+I+ HPLL LP +VREPLE STKEIMK+ GV LYREGSKPSG
Sbjct: 713 KKLLRNPPLVKIPRMRDMITTHPLLGALPSAVREPLESSTKEIMKVRGVALYREGSKPSG 772
Query: 780 IWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIES 839
IWLIS+GVVKW SKSIRNKHSL P FTHGS LGLYEVLIGKPY+ DM+TDSVVLCFF+E+
Sbjct: 773 IWLISSGVVKWASKSIRNKHSLRPTFTHGSTLGLYEVLIGKPYICDMITDSVVLCFFVET 832
Query: 840 DKILSILRSDPAVEDFLWQQSAIALSRILLPQIFEKLTMQDMRALIAERSKMTTCLRGEI 899
DKI+S+LRSDPAVEDFLWQ+SAI L+++LLPQIFEK+ MQD+RAL+AE+S MT + GE
Sbjct: 833 DKIMSMLRSDPAVEDFLWQESAIVLAKLLLPQIFEKMAMQDLRALVAEKSIMTIYISGET 892
Query: 900 IEIPYHCIGFLLEGFIKTHGLQEELITPPAALIPSQGNLSFRSAETSGVEAVSFSHQGSC 959
IEIP++ IGFLL+GFIK QEELIT PAAL+PS NLSFRS +TSG + SHQGS
Sbjct: 893 IEIPHYSIGFLLDGFIKG---QEELITYPAALMPSH-NLSFRSLDTSGAKVAGSSHQGSP 948
Query: 960 YLVETRARVIIFDIAAFEADKAVVRRTSSLFSHSSDQPHKSLSREHGNLMSWPEHFYKAR 1019
Y V+TRARVIIFDI+AFEAD+ + RR+SSL HS+DQP +SLSREHG+LMSWPEHFYK R
Sbjct: 949 YQVQTRARVIIFDISAFEADRGLQRRSSSLVPHSADQPSRSLSREHGDLMSWPEHFYKLR 1008
Query: 1020 QQKQNSEETDRKANSLSARAMQLSIFGNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHL 1079
Q Q++E K+NSLS +AMQLSIFG+MV + RSF + ++ SHSLS+P +P+
Sbjct: 1009 QDNQSTEGDRWKSNSLSYKAMQLSIFGSMVGTHQHIRSFQS-SRVKPSHSLSYPRVPTTH 1067
Query: 1080 NRRLVSVRSEGATTVREKLEVSRSTGQIPAPPSQNA-GANESHVIDYSSDDSGAEDELIV 1138
LVSVRSEG T R +++ + TGQ PP Q E+H +D SS++SG EDEL+V
Sbjct: 1068 APPLVSVRSEGPATARRGIDMGKLTGQNLKPPLQGTPHTKETHEVDDSSEESGVEDELLV 1127
Query: 1139 RIDSPSLLSFPQ 1150
RIDSPS LSF Q
Sbjct: 1128 RIDSPSKLSFHQ 1139
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|261873420|gb|ACY03274.1| salt overly sensitive 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224111392|ref|XP_002315837.1| sodium proton exchanger [Populus trichocarpa] gi|222864877|gb|EEF02008.1| sodium proton exchanger [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|99029169|gb|ABF60872.1| Na+/H+ antiporter [Populus euphratica] | Back alignment and taxonomy information |
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| >gi|255561775|ref|XP_002521897.1| sodium/hydrogen exchanger plant, putative [Ricinus communis] gi|223538935|gb|EEF40533.1| sodium/hydrogen exchanger plant, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449464876|ref|XP_004150155.1| PREDICTED: sodium/hydrogen exchanger 7-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|380508732|gb|AFD64618.1| plasmalemma Na+/H+ antiporter [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|302028367|gb|ADK91080.1| SOS1 [Bruguiera gymnorhiza] | Back alignment and taxonomy information |
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| >gi|384368002|ref|NP_001244939.1| uncharacterized protein LOC100789429 [Glycine max] gi|380513814|gb|AFD64746.1| SOS1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|269986105|gb|ACZ57357.1| plasma membrane Na+/H+ antiporter [Zygophyllum xanthoxylum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1152 | ||||||
| TAIR|locus:2041100 | 1146 | SOS1 "SALT OVERLY SENSITIVE 1" | 0.961 | 0.966 | 0.619 | 0.0 | |
| TAIR|locus:2006762 | 756 | NHX8 "Na+/H+ exchanger 8" [Ara | 0.636 | 0.969 | 0.624 | 7.8e-245 | |
| UNIPROTKB|F1PLJ2 | 1086 | SLC9C1 "Uncharacterized protei | 0.375 | 0.398 | 0.243 | 5.1e-28 | |
| UNIPROTKB|F1M7D9 | 1177 | Slc9a10 "Protein Slc9a10" [Rat | 0.376 | 0.368 | 0.235 | 4.4e-27 | |
| MGI|MGI:2685456 | 1175 | Slc9c1 "solute carrier family | 0.376 | 0.369 | 0.232 | 1e-26 | |
| TIGR_CMR|CPS_3408 | 399 | CPS_3408 "Na+/H+ antiporter Nh | 0.295 | 0.852 | 0.284 | 1.3e-24 | |
| UNIPROTKB|F1MQF9 | 1137 | SLC9A10 "Uncharacterized prote | 0.500 | 0.507 | 0.204 | 1e-23 | |
| UNIPROTKB|F1PLH9 | 723 | SLC9C1 "Uncharacterized protei | 0.375 | 0.598 | 0.243 | 2.2e-23 | |
| GENEDB_PFALCIPARUM|PF13_0019 | 1920 | PF13_0019 "sodium/hydrogen exc | 0.291 | 0.175 | 0.238 | 2.1e-20 | |
| UNIPROTKB|Q8IET0 | 1920 | PF13_0019 "Sodium/hydrogen exc | 0.291 | 0.175 | 0.238 | 2.1e-20 |
| TAIR|locus:2041100 SOS1 "SALT OVERLY SENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3469 (1226.2 bits), Expect = 0., P = 0.
Identities = 697/1126 (61%), Positives = 849/1126 (75%)
Query: 32 NPTDAVIFVGISLVLGIACRHLLRGTRVPYTVXXXXXXXXXXSLEYGTSHQLGKIGDGIR 91
+P DAV+FVG+SLVLGIA RHLLRGTRVPYTV SLEYG H LGKIG GIR
Sbjct: 32 SPVDAVLFVGMSLVLGIASRHLLRGTRVPYTVALLVIGIALGSLEYGAKHNLGKIGHGIR 91
Query: 92 LWASIXXXXXXXXXXXXXXXESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLT 151
+W I ESSF+MEVHQIKRCL QM+LLA PGV+IST LG+ +K+T
Sbjct: 92 IWNEIDPELLLAVFLPALLFESSFSMEVHQIKRCLGQMVLLAVPGVLISTACLGSLVKVT 151
Query: 152 FPYDWSWKTXXXXXXXXXATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLF 211
FPY+W WKT ATDPVAVVALLKELGASKKL+TIIEGESLMNDGTAIVV+QLF
Sbjct: 152 FPYEWDWKTSLLLGGLLSATDPVAVVALLKELGASKKLSTIIEGESLMNDGTAIVVFQLF 211
Query: 212 FQMVLGKSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYI 271
+M +G++ W +IIKFL +V+LGAVG+GLAFGIASV+WL FIFNDTVIEI LT+AVSY
Sbjct: 212 LKMAMGQNSDWSSIIKFLLKVALGAVGIGLAFGIASVIWLKFIFNDTVIEITLTIAVSYF 271
Query: 272 AFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGESQQSLHYFWEMVAYIANTLIFILSG 331
A++TAQE A SGVLTVMTLGMFYAA ARTAFKG+SQ+SLH+FWEMVAYIANTLIFILSG
Sbjct: 272 AYYTAQEWAGASGVLTVMTLGMFYAAFARTAFKGDSQKSLHHFWEMVAYIANTLIFILSG 331
Query: 332 VVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLFVVGTLYPVLRNFGYGLEWKEAII 391
VVIAEGIL +DKI GNSW +L LLY+++Q+SR+ VVG LYP+L FGYGL+WKE+II
Sbjct: 332 VVIAEGILDSDKIAYQ-GNSWRFLFLLYVYIQLSRVVVVGVLYPLLCRFGYGLDWKESII 390
Query: 392 LVWXXXXXXXXXXXXXXXXXXXXXXXXITSETGTLFVFFTGGIVFLTLIVNGSTTQYILH 451
LVW I+ ETGTLF+FFTGGIVFLTLIVNGSTTQ++L
Sbjct: 391 LVWSGLRGAVALALSLSVKQSSGNSH-ISKETGTLFLFFTGGIVFLTLIVNGSTTQFVLR 449
Query: 452 LLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEG- 510
LL MD L A K+RIL+YTKYEMLN A + F DLGDDEELGP DWPTV+ YI L EG
Sbjct: 450 LLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDEELGPADWPTVESYISSLKGSEGE 509
Query: 511 VPMHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGI 570
+ HPH+ S+ G SLDP +L+DIR+R LNGVQA YW MLDEGRI++ ANILMQSVDE +
Sbjct: 510 LVHHPHNGSKIG-SLDPKSLKDIRMRFLNGVQATYWEMLDEGRISEVTANILMQSVDEAL 568
Query: 571 DLASNELCDWRGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLEFACSICAAFLRAHKI 630
D S LCDWRGLK +V+FPNYY FL + + P+KL+TYF VERLE AC I AAFLRAH I
Sbjct: 569 DQVSTTLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVTYFAVERLESACYISAAFLRAHTI 628
Query: 631 ARQQLHDFIGDSGIASVVIEESKVEGEDARKFLEDVRVNFPQVLHVVKTRQVTYSVLNHL 690
ARQQL+DF+G+S I S+VI ES+ EGE+A+KFLE VR +FPQVL VVKT+QVTYSVLNHL
Sbjct: 629 ARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSFPQVLRVVKTKQVTYSVLNHL 688
Query: 691 IDYIQNLEKVGLLEEKEMLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHPLLRELPPS 750
+ YI+NLEKVGLLEEKE+ HLHDAVQ+ LK+LLRNPP+VK PK+SD+I++HPL LPP+
Sbjct: 689 LGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNPPIVKLPKLSDMITSHPLSVALPPA 748
Query: 751 VREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSN 810
EPL+ S KE MKL GVTLY+EGSKP+G+WLI +G+VKW SK + N HSLHP F+HGS
Sbjct: 749 FCEPLKHSKKEPMKLRGVTLYKEGSKPTGVWLIFDGIVKWKSKILSNNHSLHPTFSHGST 808
Query: 811 LGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALSRILLP 870
LGLYEVL GKPY+ D++TDS+VLCFFI+S+KILS L+SD ++DFLWQ+SA+ L ++L P
Sbjct: 809 LGLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQSDSTIDDFLWQESALVLLKLLRP 867
Query: 871 QIFEKLTMQDMRALIA-ERSKMTTCLRGEIIEIPYHCIGFLLEGFIKTHGLQEELITPPA 929
QIFE + MQ++RAL++ E SK+TT + GE IEI + IG LLEGF+K G++EELI+ PA
Sbjct: 868 QIFESVAMQELRALVSTESSKLTTYVTGESIEIDCNSIGLLLEGFVKPVGIKEELISSPA 927
Query: 930 ALIPSQGNLSFR-SAETSGVEAVSFSHQGSCYLVETRARVIIFDIAAFEADKAVVRRTSS 988
AL PS GN SF S+E SG+ VSFS Q + Y+VETRAR IIF+I AF AD+ + RR SS
Sbjct: 928 ALSPSNGNQSFHNSSEASGIMRVSFSQQATQYIVETRARAIIFNIGAFGADRTLHRRPSS 987
Query: 989 LF---SHSSDQPHKSLSREHGNLMSWPEHFYKARQQKQNSEETDRKANSLSARAMQLSIF 1045
L S SSDQ +S +EH LMSWPE+ Y A+QQ +E ++ SLS RAMQLSIF
Sbjct: 988 LTPPRSSSSDQLQRSFRKEHRGLMSWPENIY-AKQQ----QEINKTTLSLSERAMQLSIF 1042
Query: 1046 GNMVDVQRRSRSFATGTQTMQSHSLSFPSIPSHLNRRLVSVRSEGATTVREKLEVSRSTG 1105
G+MV+V RRS SF +L + +P + + LVS +SE + +++LE +
Sbjct: 1043 GSMVNVYRRSVSFGGIYNNKLQDNLLYKKLPLNPAQGLVSAKSESSIVTKKQLETRKHAC 1102
Query: 1106 QIPAPPSQNAGANESHVIDYSSDDSGAEDELIVRIDSPSLLSFPQD 1151
Q+P + N +++ SSD+ ++ ++VRIDSPS + F D
Sbjct: 1103 QLPLKGESSTRQNT--MVE-SSDEEDEDEGIVVRIDSPSKIVFRND 1145
|
|
| TAIR|locus:2006762 NHX8 "Na+/H+ exchanger 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PLJ2 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1M7D9 Slc9a10 "Protein Slc9a10" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:2685456 Slc9c1 "solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CPS_3408 CPS_3408 "Na+/H+ antiporter NhaP" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1MQF9 SLC9A10 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1PLH9 SLC9C1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| GENEDB_PFALCIPARUM|PF13_0019 PF13_0019 "sodium/hydrogen exchanger, Na+, H+ antiporter" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q8IET0 PF13_0019 "Sodium/hydrogen exchanger, Na+, H+ antiporter" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LKW9 | NHX7_ARATH | No assigned EC number | 0.6570 | 0.9800 | 0.9851 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1152 | |||
| COG0025 | 429 | COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport | 2e-60 | |
| pfam00999 | 370 | pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang | 7e-52 | |
| TIGR00840 | 559 | TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 | 2e-43 | |
| TIGR00831 | 525 | TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo | 1e-38 | |
| COG3263 | 574 | COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip | 3e-20 | |
| PRK05326 | 562 | PRK05326, PRK05326, potassium/proton antiporter; R | 1e-16 | |
| COG0475 | 397 | COG0475, KefB, Kef-type K+ transport systems, memb | 2e-09 | |
| pfam00027 | 91 | pfam00027, cNMP_binding, Cyclic nucleotide-binding | 2e-06 | |
| COG0664 | 214 | COG0664, Crp, cAMP-binding proteins - catabolite g | 3e-04 | |
| TIGR00932 | 273 | TIGR00932, 2a37, transporter, monovalent cation:pr | 0.002 | |
| cd00038 | 115 | cd00038, CAP_ED, effector domain of the CAP family | 0.002 |
| >gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 213 bits (544), Expect = 2e-60
Identities = 115/439 (26%), Positives = 201/439 (45%), Gaps = 33/439 (7%)
Query: 36 AVIFVGISLVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWAS 95
+ + + L+LG+ L +P LL++G+ G G L
Sbjct: 7 LLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPP--------GLNLISPDLE-- 56
Query: 96 IDPDLLLAVFLPALLFESSFAMEVHQIKRCLVQMILLAGPGVMISTFFLGAALKLTFPYD 155
+DP+L L +FL LLF +++ +++R +++LA P V+I+ +G P
Sbjct: 57 LDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLP-G 115
Query: 156 WSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGTAIVVYQLFFQMV 215
+ LLG +LS TDPVAV + K + K++ TI+EGESL+NDG IV++++ +
Sbjct: 116 IPLAAAFLLGAILSPTDPVAVSPIFKRVRVPKRIRTILEGESLLNDGVGIVLFKVALAAL 175
Query: 216 LGKS-FGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFI----FNDTVIEIALTLAVSY 270
LG F G + +LG + +GL G L + + ++E LTL +++
Sbjct: 176 LGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAF 235
Query: 271 IAFFTAQEGADVSGVLTVMTLGMFYAAVARTAFKGES-QQSLHYFWEMVAYIANTLIFIL 329
A+ A+ VSG+L V+ G+ R S + L FWE++ ++ N L+F+L
Sbjct: 236 AAYLLAEAL-GVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVL 294
Query: 330 SGVVIAEGILGNDKIFQNHGNSWGYLILLYIFVQVSRLF-VVGTLYPVLRNFGYGLEWKE 388
G + +L L++ + V ++R V +L L W+E
Sbjct: 295 LGAQLPLSLL--------LALGLLGLLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRE 346
Query: 389 AIILVWSGLRGAVALSLSLSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTTQY 448
+ L W+G RG V+L+L+L + + L +F ++ +L+V G T
Sbjct: 347 RLFLSWAGPRGVVSLALALLIP------LELPGPARELILFIVFLVILFSLLVQGLTLPP 400
Query: 449 ILHLLDMDKLSATKRRILD 467
+ L++ + SA + IL
Sbjct: 401 LAKKLEVSEESALAKEILG 419
|
Length = 429 |
| >gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family | Back alignment and domain information |
|---|
| >gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3 | Back alignment and domain information |
|---|
| >gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form | Back alignment and domain information |
|---|
| >gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain | Back alignment and domain information |
|---|
| >gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|233195 TIGR00932, 2a37, transporter, monovalent cation:proton antiporter-2 (CPA2) family | Back alignment and domain information |
|---|
| >gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1152 | |||
| TIGR00831 | 525 | a_cpa1 Na+/H+ antiporter, bacterial form. This mod | 100.0 | |
| TIGR00840 | 559 | b_cpa1 sodium/hydrogen exchanger 3. This model is | 100.0 | |
| KOG1965 | 575 | consensus Sodium/hydrogen exchanger protein [Inorg | 100.0 | |
| COG0025 | 429 | NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg | 100.0 | |
| KOG1966 | 670 | consensus Sodium/hydrogen exchanger protein [Inorg | 100.0 | |
| PRK05326 | 562 | potassium/proton antiporter; Reviewed | 100.0 | |
| TIGR00844 | 810 | c_cpa1 na(+)/h(+) antiporter. This model is specif | 100.0 | |
| COG3263 | 574 | NhaP-type Na+/H+ and K+/H+ antiporters with a uniq | 100.0 | |
| PF00999 | 380 | Na_H_Exchanger: Sodium/hydrogen exchanger family; | 99.97 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 99.95 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 99.95 | |
| PLN03159 | 832 | cation/H(+) antiporter 15; Provisional | 99.95 | |
| TIGR00932 | 273 | 2a37 transporter, monovalent cation:proton antipor | 99.94 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 99.94 | |
| COG0475 | 397 | KefB Kef-type K+ transport systems, membrane compo | 99.93 | |
| KOG4505 | 467 | consensus Na+/H+ antiporter [Inorganic ion transpo | 99.91 | |
| KOG0498 | 727 | consensus K+-channel ERG and related proteins, con | 99.83 | |
| KOG0499 | 815 | consensus Cyclic nucleotide-gated cation channel C | 99.77 | |
| KOG0500 | 536 | consensus Cyclic nucleotide-gated cation channel C | 99.74 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.73 | |
| COG4651 | 408 | RosB Kef-type K+ transport system, predicted NAD-b | 99.71 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.69 | |
| KOG1650 | 769 | consensus Predicted K+/H+-antiporter [Inorganic io | 99.67 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 99.66 | |
| PRK09392 | 236 | ftrB transcriptional activator FtrB; Provisional | 99.59 | |
| PRK11753 | 211 | DNA-binding transcriptional dual regulator Crp; Pr | 99.51 | |
| cd00038 | 115 | CAP_ED effector domain of the CAP family of transc | 99.49 | |
| COG0664 | 214 | Crp cAMP-binding proteins - catabolite gene activa | 99.43 | |
| PF00027 | 91 | cNMP_binding: Cyclic nucleotide-binding domain; In | 99.4 | |
| PRK10402 | 226 | DNA-binding transcriptional activator YeiL; Provis | 99.39 | |
| PRK11161 | 235 | fumarate/nitrate reduction transcriptional regulat | 99.39 | |
| smart00100 | 120 | cNMP Cyclic nucleotide-monophosphate binding domai | 99.35 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.28 | |
| TIGR03697 | 193 | NtcA_cyano global nitrogen regulator NtcA, cyanoba | 99.27 | |
| KOG0614 | 732 | consensus cGMP-dependent protein kinase [Signal tr | 99.25 | |
| PRK09391 | 230 | fixK transcriptional regulator FixK; Provisional | 99.24 | |
| PLN02868 | 413 | acyl-CoA thioesterase family protein | 99.21 | |
| PRK13918 | 202 | CRP/FNR family transcriptional regulator; Provisio | 99.18 | |
| PRK14853 | 423 | nhaA pH-dependent sodium/proton antiporter; Provis | 99.0 | |
| KOG0501 | 971 | consensus K+-channel KCNQ [Inorganic ion transport | 98.89 | |
| KOG1113 | 368 | consensus cAMP-dependent protein kinase types I an | 98.74 | |
| TIGR00773 | 373 | NhaA Na+/H+ antiporter NhaA. These proteins are me | 98.34 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 98.25 | |
| COG0786 | 404 | GltS Na+/glutamate symporter [Amino acid transport | 97.9 | |
| PRK14856 | 438 | nhaA pH-dependent sodium/proton antiporter; Provis | 97.7 | |
| KOG2968 | 1158 | consensus Predicted esterase of the alpha-beta hyd | 97.7 | |
| PRK14855 | 423 | nhaA pH-dependent sodium/proton antiporter; Provis | 97.65 | |
| PRK14854 | 383 | nhaA pH-dependent sodium/proton antiporter; Provis | 97.58 | |
| PRK09560 | 389 | nhaA pH-dependent sodium/proton antiporter; Review | 97.56 | |
| COG3004 | 390 | NhaA Na+/H+ antiporter [Inorganic ion transport an | 97.48 | |
| PRK09561 | 388 | nhaA pH-dependent sodium/proton antiporter; Review | 97.42 | |
| PF06965 | 378 | Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IP | 97.35 | |
| PF03616 | 368 | Glt_symporter: Sodium/glutamate symporter; InterPr | 97.2 | |
| PF04831 | 153 | Popeye: Popeye protein conserved region; InterPro: | 97.0 | |
| PRK11832 | 207 | putative DNA-binding transcriptional regulator; Pr | 96.89 | |
| PF03601 | 305 | Cons_hypoth698: Conserved hypothetical protein 698 | 96.81 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.38 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.2 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 95.44 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.93 | |
| PLN03159 | 832 | cation/H(+) antiporter 15; Provisional | 94.85 | |
| TIGR00210 | 398 | gltS sodium--glutamate symport carrier (gltS). | 94.31 | |
| COG0475 | 397 | KefB Kef-type K+ transport systems, membrane compo | 94.13 | |
| PF05684 | 378 | DUF819: Protein of unknown function (DUF819); Inte | 93.82 | |
| TIGR00698 | 335 | conserved hypothetical integral membrane protein. | 93.64 | |
| TIGR03802 | 562 | Asp_Ala_antiprt aspartate-alanine antiporter. All | 92.87 | |
| PF06826 | 169 | Asp-Al_Ex: Predicted Permease Membrane Region; Int | 91.34 | |
| PRK03818 | 552 | putative transporter; Validated | 90.95 | |
| PRK04972 | 558 | putative transporter; Provisional | 90.18 | |
| PF13593 | 313 | DUF4137: SBF-like CPA transporter family (DUF4137) | 89.79 | |
| TIGR03082 | 156 | Gneg_AbrB_dup membrane protein AbrB duplication. T | 89.66 | |
| PF01758 | 187 | SBF: Sodium Bile acid symporter family; InterPro: | 89.41 | |
| COG2855 | 334 | Predicted membrane protein [Function unknown] | 87.91 | |
| PRK12460 | 312 | 2-keto-3-deoxygluconate permease; Provisional | 87.89 | |
| PF03956 | 191 | DUF340: Membrane protein of unknown function (DUF3 | 87.86 | |
| TIGR00832 | 328 | acr3 arsenical-resistance protein. The first prote | 86.46 | |
| PF03390 | 414 | 2HCT: 2-hydroxycarboxylate transporter family; Int | 86.0 | |
| COG0385 | 319 | Predicted Na+-dependent transporter [General funct | 85.84 | |
| PF03601 | 305 | Cons_hypoth698: Conserved hypothetical protein 698 | 85.45 | |
| KOG3542 | 1283 | consensus cAMP-regulated guanine nucleotide exchan | 84.94 | |
| COG2985 | 544 | Predicted permease [General function prediction on | 84.68 | |
| TIGR00783 | 347 | ccs citrate carrier protein, CCS family. These pro | 84.52 | |
| TIGR00210 | 398 | gltS sodium--glutamate symport carrier (gltS). | 84.34 | |
| COG0679 | 311 | Predicted permeases [General function prediction o | 83.53 | |
| TIGR00698 | 335 | conserved hypothetical integral membrane protein. | 83.01 | |
| COG2431 | 297 | Predicted membrane protein [Function unknown] | 82.5 | |
| PRK05326 | 562 | potassium/proton antiporter; Reviewed | 82.0 | |
| COG3493 | 438 | CitS Na+/citrate symporter [Energy production and | 81.5 |
| >TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-61 Score=585.63 Aligned_cols=501 Identities=24% Similarity=0.363 Sum_probs=392.3
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhccccccccccCccccccccccccChHHHHHHHHHHHHHHhhhcCCHHHHH
Q 001116 44 LVLGIACRHLLRGTRVPYTVALLIIGIALGSLEYGTSHQLGKIGDGIRLWASIDPDLLLAVFLPALLFESSFAMEVHQIK 123 (1152)
Q Consensus 44 l~l~~~~~~l~~r~~lP~~v~lil~GillG~~~~~~~~~l~~~~~~i~~~~~~~p~l~~~ifLp~LLF~~gl~~d~~~lk 123 (1152)
++.+.+...+++|+++|++++++++|+++|+.+.+ . ...++|++++.+++|+++|++|+++|++.+|
T Consensus 7 ~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~-~------------~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~ 73 (525)
T TIGR00831 7 VMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLL-P------------EVPLDREIVLFLFLPPLLFEAAMNTDLRELR 73 (525)
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcccc-C------------CCCCCHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 33444555678999999999999999999986321 0 1357899999999999999999999999999
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHhhhhccccCHHHHHHHHhhcCCChhHHHHHHHHHHHHHHH
Q 001116 124 RCLVQMILLAGPGVMISTFFLGAALKLTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGASKKLNTIIEGESLMNDGT 203 (1152)
Q Consensus 124 ~~~~~illLav~gvlit~~~~g~~~~~l~~~~~~~~~alllGails~TDpvaV~ailkelg~~~~l~~ll~gESLlND~~ 203 (1152)
+++++++.+|+++++++++++|++++++ + ++||..|+++||++|||||+++.+++++.++|+++.++++|||++||++
T Consensus 74 ~~~~~i~~la~~~vlit~~~v~~~~~~~-~-~l~~~~alllGails~TDpvav~~il~~~~~p~rl~~il~gESllND~~ 151 (525)
T TIGR00831 74 ENFRPIALIAFLLVVVTTVVVGFSLNWI-L-GIPLALALILGAVLSPTDAVAVLGTFKSIRAPKKLSILLEGESLLNDGA 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-cccHHHHHHHHHHhCCCCHHHHHHHHhcCCCCHHHHHHHhhhhhhcchH
Confidence 9999999999999999999999999884 3 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhccc
Q 001116 204 AIVVYQLFFQMVLG-KSFGWGAIIKFLAQVSLGAVGMGLAFGIASVLWLGFIFNDTVIEIALTLAVSYIAFFTAQEGADV 282 (1152)
Q Consensus 204 aivlf~~~~~~~~~-~~~s~~~i~~~~~~~~lggi~iG~~~G~~~~~~l~~~~~d~~~~i~ltl~~~y~~y~iaee~lg~ 282 (1152)
++++|.++..+..+ +.+++...+..+...++||+++|+++|++..+++++..+++..++.++++++|++|++| |.+|+
T Consensus 152 alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~y~lA-e~lg~ 230 (525)
T TIGR00831 152 ALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLA-ERFHF 230 (525)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-HHhCC
Confidence 99999999988864 55666554444445677889999999999887887767788889999999999999999 67999
Q ss_pred cchHHHHHHHHHHhhhhhc-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccc--ccccchHH---HHH
Q 001116 283 SGVLTVMTLGMFYAAVART-AFKGESQQSLHYFWEMVAYIANTLIFILSGVVIAEGILGNDKIF--QNHGNSWG---YLI 356 (1152)
Q Consensus 283 SGvlavvvaGl~l~~~~~~-~~~~~~~~~l~~fw~~i~~l~~~liFil~Gl~i~~~~l~~~~~~--~~~~~~~~---~~l 356 (1152)
||++|+|++|++++++++. +.+++.+...++||+.+++++|+++|+++|++++.......... ......+. ..+
T Consensus 231 SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (525)
T TIGR00831 231 SGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAF 310 (525)
T ss_pred CHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999987766 77888889999999999999999999999999975332110000 00000111 134
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHhhCCCCChhHHHHHhhhchhhHHHHHHHhhhhccc-CCCCcccccccceehhhhhh
Q 001116 357 LLYIFVQVSRLFVVGTL--YPVLRNFGYGLEWKEAIILVWSGLRGAVALSLSLSVKRSS-GGSSLITSETGTLFVFFTGG 433 (1152)
Q Consensus 357 ~l~~~~~v~R~l~v~~~--~p~l~~~~~~~~~~e~~vl~w~GlRGavslalAl~v~~~~-~~~~~~~~~~~~~~vf~~~g 433 (1152)
+++..+.+.|+++++.. .++.++.+.+++||++++++|+|+||++++++|+++|... ++.+++ .++.+++++++
T Consensus 311 ~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~G~RG~vslA~al~~p~~~~~g~~~p---~r~~i~~~~~~ 387 (525)
T TIGR00831 311 VIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWAGLRGAIPLALALSFPNQLLSGMAFP---ARYELVFLAAG 387 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheeccchHHHHHHHHHHccccccCCCCCc---hHHHHHHHHHH
Confidence 44556677787765432 1223334456889999999999999999999999999753 333443 35789999999
Q ss_pred HHHhhhhhhhhcHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHH-HHHHHHhhhhcCCC
Q 001116 434 IVFLTLIVNGSTTQYILHLLDMDKLSATKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTV-KRYIRCLNDLEGVP 512 (1152)
Q Consensus 434 vvllTlli~g~t~~~ll~~Lgl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~~v-~~~~~~l~~~~~~~ 512 (1152)
+|++|+++||+|+|+++|++|+++.++. +.....++..+.+.+.+.++++.++...+++..+.+ ++|..++++.+.+.
T Consensus 388 vVl~TllvqG~tlp~l~r~l~~~~~~~~-~~e~~~a~~~~~~aa~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (525)
T TIGR00831 388 VILFSLLVQGISLPIFVKRKFVSEHSER-ELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEELRADG 466 (525)
T ss_pred HHHHHHHHHHhhHHHHHHhcCCCCCChh-hHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999877543 333445567788888888888776554433323333 45555554432221
Q ss_pred CCCCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 001116 513 MHPHSASETGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDE 568 (1152)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~r~r~l~~~~~~~~~~~~~g~is~~~~~~L~~~vd~ 568 (1152)
.. .. + +...+.+...+.|++++++||+.+.+++++|+||+++++.+++.+|.
T Consensus 467 ~~-~~--~-~~~~~~~~~~~~~~~~l~~er~~l~~~~~~~~i~~~~~~~~~~~ld~ 518 (525)
T TIGR00831 467 EE-KI--R-SGMGEKNLRRRARLYVLDAKRSAVVDLRAGGLISQEVLLELMRELDL 518 (525)
T ss_pred cc-ch--h-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhH
Confidence 00 00 0 00011112346888899999999999999999999999999888764
|
This model is specific for the bacterial members of this family. |
| >TIGR00840 b_cpa1 sodium/hydrogen exchanger 3 | Back alignment and domain information |
|---|
| >KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK05326 potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >TIGR00844 c_cpa1 na(+)/h(+) antiporter | Back alignment and domain information |
|---|
| >COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ] | Back alignment and domain information |
|---|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
| >PLN03159 cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
| >TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family | Back alignment and domain information |
|---|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
| >COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
| >COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09392 ftrB transcriptional activator FtrB; Provisional | Back alignment and domain information |
|---|
| >PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional | Back alignment and domain information |
|---|
| >cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor | Back alignment and domain information |
|---|
| >COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] | Back alignment and domain information |
|---|
| >PRK10402 DNA-binding transcriptional activator YeiL; Provisional | Back alignment and domain information |
|---|
| >PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >smart00100 cNMP Cyclic nucleotide-monophosphate binding domain | Back alignment and domain information |
|---|
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial | Back alignment and domain information |
|---|
| >KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09391 fixK transcriptional regulator FixK; Provisional | Back alignment and domain information |
|---|
| >PLN02868 acyl-CoA thioesterase family protein | Back alignment and domain information |
|---|
| >PRK13918 CRP/FNR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
| >KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR00773 NhaA Na+/H+ antiporter NhaA | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
| >KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
| >PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional | Back alignment and domain information |
|---|
| >PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH | Back alignment and domain information |
|---|
| >PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate | Back alignment and domain information |
|---|
| >PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle | Back alignment and domain information |
|---|
| >PRK11832 putative DNA-binding transcriptional regulator; Provisional | Back alignment and domain information |
|---|
| >PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins | Back alignment and domain information |
|---|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
| >PLN03159 cation/H(+) antiporter 15; Provisional | Back alignment and domain information |
|---|
| >TIGR00210 gltS sodium--glutamate symport carrier (gltS) | Back alignment and domain information |
|---|
| >COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
| >PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species | Back alignment and domain information |
|---|
| >TIGR00698 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
| >TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter | Back alignment and domain information |
|---|
| >PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters | Back alignment and domain information |
|---|
| >PRK03818 putative transporter; Validated | Back alignment and domain information |
|---|
| >PRK04972 putative transporter; Provisional | Back alignment and domain information |
|---|
| >PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) | Back alignment and domain information |
|---|
| >TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication | Back alignment and domain information |
|---|
| >PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes | Back alignment and domain information |
|---|
| >COG2855 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK12460 2-keto-3-deoxygluconate permease; Provisional | Back alignment and domain information |
|---|
| >PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments | Back alignment and domain information |
|---|
| >TIGR00832 acr3 arsenical-resistance protein | Back alignment and domain information |
|---|
| >PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom | Back alignment and domain information |
|---|
| >COG0385 Predicted Na+-dependent transporter [General function prediction only] | Back alignment and domain information |
|---|
| >PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins | Back alignment and domain information |
|---|
| >KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2985 Predicted permease [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00783 ccs citrate carrier protein, CCS family | Back alignment and domain information |
|---|
| >TIGR00210 gltS sodium--glutamate symport carrier (gltS) | Back alignment and domain information |
|---|
| >COG0679 Predicted permeases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00698 conserved hypothetical integral membrane protein | Back alignment and domain information |
|---|
| >COG2431 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK05326 potassium/proton antiporter; Reviewed | Back alignment and domain information |
|---|
| >COG3493 CitS Na+/citrate symporter [Energy production and conversion] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 4e-12
Identities = 96/650 (14%), Positives = 190/650 (29%), Gaps = 185/650 (28%)
Query: 304 KGESQQSLHYFWEMVAYIANTL-IFILSGVVIAEGILGNDKIF-----QNHGNSWGYLIL 357
K +L FW +++ + F+ E +L + F + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 358 LYIFVQVSRLFVVGTLYP-----------VLRNFGYGLEWKEAIILVWSGLRGAVALSLS 406
+YI Q RL+ ++ LR L + +++ G+ G+ ++
Sbjct: 111 MYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--GVLGSGKTWVA 167
Query: 407 LSVKRSSGGSSLITSETGTLFVFFTGGIVFLTLIVNGSTT------QYILHLLDMDKLSA 460
L V S + I +L L S Q +L+ +D + S
Sbjct: 168 LDVCLSYK-----------VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 461 TKRRILDYTKYEMLNTAFKTFGDLGDDEELGPVDWPTVKRYIRCLNDLEGVPMHPHSASE 520
+ + + + L K Y CL L V ++
Sbjct: 217 SDHSSNIKLRIHSIQAELRRL--LKS------------KPYENCLLVLLNV-----QNAK 257
Query: 521 TGDSLDPTNLRDIRIRLLNGVQAAYWAMLDEGRITQTAANILMQSVDEGIDLASNELCDW 580
++ + + ++L + T+ S ++ +
Sbjct: 258 AWNAFN------LSCKIL--L------------TTRFKQVTDFLSAATTTHISLDHHSM- 296
Query: 581 RGLKDNVSFPNYYKFLQTSMFPQKLITYFTVERLE------FACSICAAFLRAHKIARQQ 634
L + K+L PQ L E SI A +R
Sbjct: 297 -TLTPDEVKSLLLKYLDCR--PQDL-------PREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 635 LHDFIGDSGIASVVIEES--KVEGEDARK-------FLEDVRVNFP-QVLHVV---KTRQ 681
D + +IE S +E + RK F + P +L ++ +
Sbjct: 347 WKHVNCDK--LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI--PTILLSLIWFDVIKS 402
Query: 682 VTYSVLNHLIDYIQNLEKVGLLEE--KEM-LHLHDAVQSDLKRLLRNPPLVKFPKISDLI 738
V+N L Y L+E+ KE + + + +LK K+ +
Sbjct: 403 DVMVVVNKLHKY-------SLVEKQPKESTISIPS-IYLELKV-----------KLENEY 443
Query: 739 SAHPLLRELPPSVREPLELSTKEIMK--------------LSGVTLYREGSKPSGIWLIS 784
+ H + + P + +++ L + + ++L
Sbjct: 444 ALHRSIVD---HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-- 498
Query: 785 NGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILS 844
+ ++ + IR H GS L + L K Y + ++D
Sbjct: 499 D--FRFLEQKIR--HDSTAWNASGSILNTLQQL--KFYKP----------YICDNDPKYE 542
Query: 845 ILRSDPAVEDFLWQQSAIAL----SRILLPQIFEKLTMQDMRALIAERSK 890
L + + DFL + + + +L +I L M + A+ E K
Sbjct: 543 RLVNA--ILDFLPKIEENLICSKYTDLL--RI--AL-MAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149 | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227 | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216 | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237 | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231 | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220 | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469 | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232 | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1152 | |||
| 2ptm_A | 198 | Hyperpolarization-activated (IH) channel; ION chan | 99.86 | |
| 3bpz_A | 202 | Potassium/sodium hyperpolarization-activated cycli | 99.84 | |
| 3ukn_A | 212 | Novel protein similar to vertebrate potassium VOL | 99.81 | |
| 3mdp_A | 142 | Cyclic nucleotide-binding domain (CNMP-BD) protei; | 99.75 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.75 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.74 | |
| 3gyd_A | 187 | CNMP-BD protein, cyclic nucleotide-binding domain; | 99.72 | |
| 2pqq_A | 149 | Putative transcriptional regulator; APC7345, strep | 99.72 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.72 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.71 | |
| 4ev0_A | 216 | Transcription regulator, CRP family; CAMP binding, | 99.71 | |
| 2z69_A | 154 | DNR protein; beta barrel, dimerization helix, tran | 99.71 | |
| 3d0s_A | 227 | Transcriptional regulatory protein; CAMP receptor | 99.7 | |
| 3dn7_A | 194 | Cyclic nucleotide binding regulatory protein; stru | 99.69 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.69 | |
| 1zyb_A | 232 | Transcription regulator, CRP family; NP_813211.1, | 99.69 | |
| 3fx3_A | 237 | Cyclic nucleotide-binding protein; helix_TURN_heli | 99.68 | |
| 3idb_B | 161 | CAMP-dependent protein kinase type II-beta regulat | 99.68 | |
| 3dv8_A | 220 | Transcriptional regulator, CRP/FNR family; cyclic | 99.68 | |
| 3e97_A | 231 | Transcriptional regulator, CRP/FNR family; YP_6044 | 99.67 | |
| 3dkw_A | 227 | DNR protein; CRP-FNR, HTH, beta barrel, dimerizati | 99.66 | |
| 3iwz_A | 230 | CAP-like, catabolite activation-like protein; XCC, | 99.65 | |
| 3ocp_A | 139 | PRKG1 protein; serine/threonine kinase, TF2I and I | 99.64 | |
| 1vp6_A | 138 | CNBD, cyclic-nucleotide binding domain of mesorhiz | 99.63 | |
| 4f8a_A | 160 | Potassium voltage-gated channel subfamily H membe; | 99.63 | |
| 2gau_A | 232 | Transcriptional regulator, CRP/FNR family; structu | 99.62 | |
| 3ryp_A | 210 | Catabolite gene activator; CAMP receptor protein ( | 99.61 | |
| 4ava_A | 333 | Lysine acetyltransferase; allosteric regulation, d | 99.61 | |
| 3pna_A | 154 | CAMP-dependent protein kinase type I-alpha regula | 99.61 | |
| 3shr_A | 299 | CGMP-dependent protein kinase 1; cyclic nucleotide | 99.59 | |
| 2fmy_A | 220 | COOA, carbon monoxide oxidation system transcripti | 99.59 | |
| 2oz6_A | 207 | Virulence factor regulator; winged helix, helix-tu | 99.59 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.58 | |
| 3kcc_A | 260 | Catabolite gene activator; helix-turn-helix, CAMP, | 99.58 | |
| 1o5l_A | 213 | Transcriptional regulator, CRP family; TM1171, str | 99.58 | |
| 1wgp_A | 137 | Probable cyclic nucleotide-gated ION channel 6; cy | 99.56 | |
| 1ft9_A | 222 | Carbon monoxide oxidation system transcription reg | 99.55 | |
| 3e6c_C | 250 | CPRK, cyclic nucleotide-binding protein; CPRK, hal | 99.53 | |
| 2qcs_B | 291 | CAMP-dependent protein kinase type I-alpha regula | 99.51 | |
| 3of1_A | 246 | CAMP-dependent protein kinase regulatory subunit; | 99.48 | |
| 2d93_A | 134 | RAP guanine nucleotide exchange factor 6; CNMP_bin | 99.48 | |
| 3tnp_B | 416 | CAMP-dependent protein kinase type II-beta regula | 99.47 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.46 | |
| 4din_B | 381 | CAMP-dependent protein kinase type I-beta regulat | 99.45 | |
| 3la7_A | 243 | Global nitrogen regulator; activator, DNA-binding, | 99.44 | |
| 2bgc_A | 238 | PRFA; bacterial infection, human pathogen, transcr | 99.44 | |
| 1zcd_A | 388 | Na(+)/H(+) antiporter 1; membrane protein; 3.45A { | 99.34 | |
| 3beh_A | 355 | MLL3241 protein; transmembrane protein, membrane p | 99.32 | |
| 1o7f_A | 469 | CAMP-dependent RAP1 guanine-nucleotide exchange fa | 99.3 | |
| 3b02_A | 195 | Transcriptional regulator, CRP family; structural | 99.29 | |
| 2zcw_A | 202 | TTHA1359, transcriptional regulator, FNR/CRP famil | 99.17 | |
| 3cf6_E | 694 | RAP guanine nucleotide exchange factor (GEF) 4; EP | 99.15 | |
| 4f7z_A | 999 | RAP guanine nucleotide exchange factor 4; cyclic n | 99.11 | |
| 2l0e_A | 33 | Sodium/hydrogen exchanger 1; transmembrane helix, | 98.14 | |
| 2htg_A | 28 | NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; | 97.48 | |
| 2k3c_A | 33 | TMIX peptide; membrane peptide, dodecylphosphochol | 96.65 | |
| 2kbv_A | 28 | Sodium/hydrogen exchanger 1; transmembrane, peptid | 96.36 | |
| 3zux_A | 332 | Transporter, ASBTNM; transport protein, membrane p | 93.89 |
| >2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=203.97 Aligned_cols=188 Identities=14% Similarity=0.222 Sum_probs=165.3
Q ss_pred HHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhccchhHH-HhhhhHHHHHHHHHhhcCCCCCCCCChhhHHhcCC
Q 001116 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 742 (1152)
Q Consensus 664 ~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~lde~E-~~~L~~~i~~~lk~l~~~p~~~~~~~~~~lL~~~p 742 (1152)
.+++.+..++.++|+.++++..+..++++|+++.|+....++++ ...|.+.+..++..... .++++++|
T Consensus 8 ~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~----------~~~l~~~~ 77 (198)
T 2ptm_A 8 RQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNC----------RDLVASVP 77 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHT----------HHHHHHCG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHH----------HHHHhcCc
Confidence 45677777888999999999999999999999999876677666 44477777777664332 57899999
Q ss_pred CCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCc
Q 001116 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (1152)
Q Consensus 743 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r 822 (1152)
+|++++++.++.++..++.+.+.+|++|+++||.++++|||.+|.|+++. .+|+ .+..+++|++|||.+++.+.++
T Consensus 78 ~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~ 153 (198)
T 2ptm_A 78 FFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERR 153 (198)
T ss_dssp GGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCC
T ss_pred chhcCCHHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999987 4454 4679999999999999999999
Q ss_pred eeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHHH
Q 001116 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIALS 865 (1152)
Q Consensus 823 ~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~la 865 (1152)
.++++|.++|+++.|++++|.++++++|.+...+++.++.++.
T Consensus 154 ~~~~~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~rl~ 196 (198)
T 2ptm_A 154 VASVKCETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRRLT 196 (198)
T ss_dssp SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTCC-
T ss_pred ceEEEEeeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888887766554
|
| >3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* | Back alignment and structure |
|---|
| >3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B | Back alignment and structure |
|---|
| >3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
| >2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* | Back alignment and structure |
|---|
| >3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* | Back alignment and structure |
|---|
| >3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* | Back alignment and structure |
|---|
| >3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} | Back alignment and structure |
|---|
| >3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
| >3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* | Back alignment and structure |
|---|
| >1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A | Back alignment and structure |
|---|
| >4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... | Back alignment and structure |
|---|
| >4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* | Back alignment and structure |
|---|
| >3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* | Back alignment and structure |
|---|
| >3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} | Back alignment and structure |
|---|
| >2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* | Back alignment and structure |
|---|
| >2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} | Back alignment and structure |
|---|
| >1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 | Back alignment and structure |
|---|
| >1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 | Back alignment and structure |
|---|
| >3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A | Back alignment and structure |
|---|
| >2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* | Back alignment and structure |
|---|
| >3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* | Back alignment and structure |
|---|
| >2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A | Back alignment and structure |
|---|
| >1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A | Back alignment and structure |
|---|
| >3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* | Back alignment and structure |
|---|
| >1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 | Back alignment and structure |
|---|
| >3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A | Back alignment and structure |
|---|
| >2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} | Back alignment and structure |
|---|
| >4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E | Back alignment and structure |
|---|
| >2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic} | Back alignment and structure |
|---|
| >2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic} | Back alignment and structure |
|---|
| >2kbv_A Sodium/hydrogen exchanger 1; transmembrane, peptide, NHE1, micelle, alternative splicing, antiport, glycoprotein, ION transport, membrane; NMR {Synthetic} | Back alignment and structure |
|---|
| >3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1152 | ||||
| d1vp6a_ | 133 | b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo | 5e-07 | |
| d1o7fa2 | 155 | b.82.3.2 (A:13-167) Regulatory domain of Epac2, do | 3e-06 | |
| d1ne6a1 | 136 | b.82.3.2 (A:109-244) Regulatory subunit of Protein | 1e-05 | |
| d1ne6a2 | 132 | b.82.3.2 (A:245-376) Regulatory subunit of Protein | 6e-05 | |
| d1cx4a2 | 147 | b.82.3.2 (A:266-412) Regulatory subunit of Protein | 0.001 | |
| d1o7fa3 | 124 | b.82.3.2 (A:322-445) Regulatory domain of Epac2, d | 0.004 |
| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: Putative ion channel CnbD species: Mesorhizobium loti [TaxId: 381]
Score = 47.8 bits (113), Expect = 5e-07
Identities = 21/131 (16%), Positives = 48/131 (36%), Gaps = 7/131 (5%)
Query: 731 FPKISDLISAHPLLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKW 790
F + L++A PL ++L P+V + + + +G + R G ++ + G V
Sbjct: 6 FVRNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSV 65
Query: 791 TSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPYMSDMVTDSVVLCFFIESDKILSILRSDP 850
G+ G ++ G+P + + + V + S + S P
Sbjct: 66 A-------TPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSP 118
Query: 851 AVEDFLWQQSA 861
+ + + +
Sbjct: 119 EIAEIFRKTAL 129
|
| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155 | Back information, alignment and structure |
|---|
| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136 | Back information, alignment and structure |
|---|
| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132 | Back information, alignment and structure |
|---|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147 | Back information, alignment and structure |
|---|
| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1152 | |||
| d1q3ea_ | 193 | HCN pacemaker channel {Mouse (Mus musculus) [TaxId | 99.83 | |
| d1cx4a2 | 147 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.75 | |
| d1ne6a2 | 132 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.74 | |
| d1cx4a1 | 136 | Regulatory subunit of Protein kinase A {Rat (Rattu | 99.72 | |
| d1ne6a1 | 136 | Regulatory subunit of Protein kinase A {Cow (Bos t | 99.71 | |
| d1vp6a_ | 133 | Putative ion channel CnbD {Mesorhizobium loti [Tax | 99.7 | |
| d1zyba2 | 147 | Probable transcription regulator BT4300, N-termina | 99.7 | |
| d2gaua2 | 142 | Transcriptional regulator PG0396, N-terminal domai | 99.66 | |
| d2oz6a2 | 134 | Cyclic AMP receptor-like protein Vfr {Pseudomonas | 99.63 | |
| d1i5za2 | 132 | Catabolite gene activator protein, N-terminal doma | 99.63 | |
| d1ft9a2 | 132 | CO-sensing protein CooA, N-terminal domain {Rhodos | 99.62 | |
| d3e5ua2 | 139 | Chlorophenol reduction protein CprK {Desulfitobact | 99.62 | |
| d1o7fa3 | 124 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.6 | |
| d1o7fa2 | 155 | Regulatory domain of Epac2, domains 1 and 3 {Mouse | 99.59 | |
| d1o5la1 | 129 | CRP-like transcriptional regulator TM1171, N-termi | 99.59 | |
| d1wgpa_ | 137 | Probable cyclic nucleotide-gated ion channel 6 {Th | 99.59 | |
| d2zcwa2 | 112 | Transcriptional regulator TTHA1359, N-terminal dom | 99.39 | |
| d2bgca2 | 131 | Listeriolysin regulatory protein PrfA, N-terminal | 90.15 |
| >d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: All beta proteins fold: Double-stranded beta-helix superfamily: cAMP-binding domain-like family: cAMP-binding domain domain: HCN pacemaker channel species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=2.3e-20 Score=194.76 Aligned_cols=186 Identities=17% Similarity=0.244 Sum_probs=163.2
Q ss_pred HHHHHhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHhccchhHH-HhhhhHHHHHHHHHhhcCCCCCCCCChhhHHhcCC
Q 001116 664 EDVRVNFPQVLHVVKTRQVTYSVLNHLIDYIQNLEKVGLLEEKE-MLHLHDAVQSDLKRLLRNPPLVKFPKISDLISAHP 742 (1152)
Q Consensus 664 ~~l~~~fp~i~~~lktr~~~~~ll~~~~~~i~~l~~~G~lde~E-~~~L~~~i~~~lk~l~~~p~~~~~~~~~~lL~~~p 742 (1152)
.+++.++-++.++|+.++++..+..++++|+++.|+....++.+ ...+.+.+..++..... .++++++|
T Consensus 5 ~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~~----------~~~l~~~~ 74 (193)
T d1q3ea_ 5 RQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNC----------RKLVASMP 74 (193)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHT----------HHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHHHHH----------HHHHhcch
Confidence 45677888899999999999999999999999999877777665 45567777766664332 47899999
Q ss_pred CCCCCCccchhHhhccceEEEEcCCceEEcCCCCCCeeEEEeeeEEEEEEEeCCCcEEEEeEeCCCCccchhhhhcCCCc
Q 001116 743 LLRELPPSVREPLELSTKEIMKLSGVTLYREGSKPSGIWLISNGVVKWTSKSIRNKHSLHPVFTHGSNLGLYEVLIGKPY 822 (1152)
Q Consensus 743 lF~~Ls~e~l~~L~~~~~~~~~~~Ge~I~~eGe~~~~iy~I~sG~V~v~~~~~~g~~~i~~~l~~G~~fGE~~lL~~~~r 822 (1152)
+|++++++.+..|+..++...+.+|++|+++||.++++|||.+|.|++...+ +. ...+++|++|||.+++.+.++
T Consensus 75 ~F~~~~~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~--~~---~~~l~~G~~fGe~~~~~~~~~ 149 (193)
T d1q3ea_ 75 LFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKG--NK---EMKLSDGSYFGEICLLTRGRR 149 (193)
T ss_dssp HHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-C--CC---EEEECTTCEECHHHHHHCSBC
T ss_pred HHHhhhHHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCC--cc---eeeeccceeeeeeeccCCCcc
Confidence 9999999999999999999999999999999999999999999999997643 22 246899999999999999999
Q ss_pred eeEEEEcceEEEEEEeHHHHHHHHhhCHHHHHHHHHHHHHHH
Q 001116 823 MSDMVTDSVVLCFFIESDKILSILRSDPAVEDFLWQQSAIAL 864 (1152)
Q Consensus 823 ~atv~A~t~~~l~~I~~~~f~~ll~~~p~l~~~i~~~la~~l 864 (1152)
.++++|.++|+++.|++++|.++++++|.+...+.+.+..++
T Consensus 150 ~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~RL 191 (193)
T d1q3ea_ 150 TASVRADTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAIDRL 191 (193)
T ss_dssp SSEEEESSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHHHH
T ss_pred cccceecCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999988887776655
|
| >d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} | Back information, alignment and structure |
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| >d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
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| >d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
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| >d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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| >d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
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| >d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
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| >d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} | Back information, alignment and structure |
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