Citrus Sinensis ID: 001127
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1148 | 2.2.26 [Sep-21-2011] | |||||||
| Q6GFF2 | 730 | ATP-dependent DNA helicas | yes | no | 0.528 | 0.831 | 0.301 | 2e-66 | |
| Q8NVT1 | 730 | ATP-dependent DNA helicas | yes | no | 0.529 | 0.832 | 0.300 | 2e-66 | |
| Q6G828 | 730 | ATP-dependent DNA helicas | yes | no | 0.529 | 0.832 | 0.300 | 2e-66 | |
| Q5HEL7 | 730 | ATP-dependent DNA helicas | yes | no | 0.529 | 0.832 | 0.300 | 2e-66 | |
| Q53727 | 730 | ATP-dependent DNA helicas | yes | no | 0.529 | 0.832 | 0.300 | 2e-66 | |
| P64319 | 730 | ATP-dependent DNA helicas | yes | no | 0.529 | 0.832 | 0.300 | 2e-66 | |
| P64318 | 730 | ATP-dependent DNA helicas | yes | no | 0.529 | 0.832 | 0.300 | 2e-66 | |
| Q8CRT9 | 729 | ATP-dependent DNA helicas | yes | no | 0.535 | 0.843 | 0.295 | 1e-64 | |
| Q5HN29 | 729 | ATP-dependent DNA helicas | yes | no | 0.535 | 0.843 | 0.295 | 1e-64 | |
| P0A5A3 | 771 | ATP-dependent DNA helicas | yes | no | 0.551 | 0.821 | 0.289 | 6e-63 |
| >sp|Q6GFF2|PCRA_STAAR ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain MRSA252) GN=pcrA PE=3 SV=1 | Back alignment and function desciption |
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Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 219/726 (30%), Positives = 346/726 (47%), Gaps = 119/726 (16%)
Query: 245 LQSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTA 289
L +N +Q EA PLLI+AG GSGK +SP N+LA+TFT
Sbjct: 5 LNHMNTEQSEA-VKTTEGPLLIMAGAGSGKTRVLTHRIAYLLDEKDVSPYNVLAITFTNK 63
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
AA EM++R+ +VG A+ + +STFHS +++ R A+++ F I Q+ I
Sbjct: 64 AAREMKERVQKLVGDQ-AEVIWMSTFHSMCVRILRRDADRIGIERNFTIIDPTDQKSVIK 122
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
+ +L+NE I K+ M G ++ L
Sbjct: 123 D---VLKNENI-DSKKFEPRMFI--GAISNLKNEL------------------------- 151
Query: 410 GMDVAKASGKTPAEFRK----IGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTF 465
KTPA+ +K ++ A + Y L ALD+ DLI ++ L
Sbjct: 152 ---------KTPADAQKEATDYHSQMVATVYSGYQRQLSRNEALDFDDLIMTTINLFERV 202
Query: 466 PEVFQEYQDSWKAIIVDEFQDTSAMQYSLLQILASH-NRITIVGDDDQSIFSFNGADISG 524
PEV + YQ+ ++ I VDE+QDT+ QY+L+++LAS + +VGD DQSI+ + GADI
Sbjct: 203 PEVLEYYQNKFQYIHVDEYQDTNKAQYTLVKLLASKFKNLCVVGDSDQSIYGWRGADIQN 262
Query: 525 FDSFRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKE 584
SF KD+ I L +NYRST+ I+ AA+ +I++N +R + K + T N++G KI E
Sbjct: 263 ILSFEKDYPEANTIFLEQNYRSTKTILNAANEVIKNNSER-KPKGLWTANTNGEKIHYYE 321
Query: 585 CHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFN-IH 643
E + F+I +I++H NG Y +AILYR +V + F + +P+ +
Sbjct: 322 AMTERDEAEFVIREIMKHQRNGK----KYQDMAILYRTNAQSRVLEETFMKSNMPYTMVG 377
Query: 644 GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI--DHIDKISTIR 701
G FY +K ++ +++ LR DD +R+ KR + ++K+
Sbjct: 378 GQKFYDRKEIKDLLSYLRIIANSNDDISLQRIINV--------PKRGVGPSSVEKVQNYA 429
Query: 702 KCSFISAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVP 761
+ IS + A G K+ +TQ + L E+I L++ + + I + + V
Sbjct: 430 LQNNISMFDALGEADFIGLSKK--VTQ--ECLNFYELIQSLIKEQEFLE--IHEIVDEVL 483
Query: 762 QKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGC 821
QK + +L +N L S + L ++ +F+S E N +++
Sbjct: 484 QKSGYRE----------MLERENTLES--RSRLENIDEFMS---VPKDYEENTPLEEQSL 528
Query: 822 INVLK--AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPL 879
IN L + + I E +T EN VTL T+H +KGLE+ IVF+ E+ P
Sbjct: 529 INFLTDLSLVADIDEADT----------ENGVTLMTMHSAKGLEFPIVFIMGMEESLFPH 578
Query: 880 VHEFNGAVNEKGT-SVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFLKEI 935
+ A+ +G ++EERR+ YVA+TRA + L+I + M+ Q PSRFLKEI
Sbjct: 579 IR----AIKSEGDHEMQEERRICYVAITRAEEVLYITHATSRMLFGRPQSNMPSRFLKEI 634
Query: 936 PHHLRE 941
P L E
Sbjct: 635 PESLLE 640
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Essential helicase. Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2 |
| >sp|Q8NVT1|PCRA_STAAW ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain MW2) GN=pcrA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q6G828|PCRA_STAAS ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain MSSA476) GN=pcrA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5HEL7|PCRA_STAAC ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain COL) GN=pcrA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q53727|PCRA_STAA8 ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain NCTC 8325) GN=pcrA PE=1 SV=3 | Back alignment and function description |
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| >sp|P64319|PCRA_STAAN ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain N315) GN=pcrA PE=1 SV=1 | Back alignment and function description |
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| >sp|P64318|PCRA_STAAM ATP-dependent DNA helicase PcrA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pcrA PE=1 SV=1 | Back alignment and function description |
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| >sp|Q8CRT9|PCRA_STAES ATP-dependent DNA helicase PcrA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pcrA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q5HN29|PCRA_STAEQ ATP-dependent DNA helicase PcrA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pcrA PE=3 SV=1 | Back alignment and function description |
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| >sp|P0A5A3|UVRD1_MYCTU ATP-dependent DNA helicase UvrD1 OS=Mycobacterium tuberculosis GN=uvrD1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1148 | ||||||
| 255539935 | 1089 | ATP-dependent DNA helicase pcrA, putativ | 0.941 | 0.992 | 0.648 | 0.0 | |
| 359490106 | 1113 | PREDICTED: ATP-dependent DNA helicase pc | 0.931 | 0.960 | 0.644 | 0.0 | |
| 224114652 | 1056 | predicted protein [Populus trichocarpa] | 0.901 | 0.980 | 0.642 | 0.0 | |
| 356574720 | 1123 | PREDICTED: ATP-dependent DNA helicase pc | 0.950 | 0.971 | 0.617 | 0.0 | |
| 240256061 | 1149 | P-loop containing nucleoside triphosphat | 0.960 | 0.959 | 0.608 | 0.0 | |
| 262385344 | 1147 | SRS2 [Arabidopsis thaliana] | 0.959 | 0.959 | 0.607 | 0.0 | |
| 297744967 | 951 | unnamed protein product [Vitis vinifera] | 0.778 | 0.940 | 0.685 | 0.0 | |
| 449451960 | 1105 | PREDICTED: ATP-dependent DNA helicase Pc | 0.927 | 0.963 | 0.591 | 0.0 | |
| 449488705 | 1129 | PREDICTED: LOW QUALITY PROTEIN: ATP-depe | 0.925 | 0.940 | 0.577 | 0.0 | |
| 242045726 | 1185 | hypothetical protein SORBIDRAFT_02g03400 | 0.758 | 0.735 | 0.612 | 0.0 |
| >gi|255539935|ref|XP_002511032.1| ATP-dependent DNA helicase pcrA, putative [Ricinus communis] gi|223550147|gb|EEF51634.1| ATP-dependent DNA helicase pcrA, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1464 bits (3790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 750/1156 (64%), Positives = 888/1156 (76%), Gaps = 75/1156 (6%)
Query: 1 MLKENVNVTTHLPVDQINESHRSRVSQNFRAAKPFLDRKRQRQAVDFDRQFPNKSRDSNS 60
M KEN + T R+R+SQNF+AAK L RKR D + S+D+
Sbjct: 1 MSKENSKIMT--------PEQRARISQNFKAAKALLSRKRP-----LDSSSSSSSKDA-- 45
Query: 61 IPIESPDSITSVKRVPLAEIPVSTPSLQTINGVKSVVGEFSGISCVLNDLSNERTNGVPL 120
ESP T+VKRVPL E+ +TPS NG+KS ND+S R V L
Sbjct: 46 ---ESP--FTNVKRVPLMEMQTNTPSSFRANGIKS------------NDISCSRLTSVSL 88
Query: 121 D---ISDPFITPIKQ-PEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQ 176
D ITPIKQ PE + +S++ S P+ LDDDFD+SIL+EIDAIC++S+A V +
Sbjct: 89 GNECCLDSVITPIKQHPECWGLSDNLSTPTLLDDDFDESILKEIDAICDQSSAAKVETQR 148
Query: 177 -NSGIYEETHQNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKTQ 235
NS + +N+ +L S+ +E+IR G ++ +E DT QT+K
Sbjct: 149 FNSSSFSVDKSEENTSDF--TTLLSIAASEDIRTQ------GTLEPRLEDKDTSQTVKHG 200
Query: 236 NMPDEYSKYLQSLNDQQLEAACGDMSTPLLIVAGPGSGKGISPSNILAMTFTTAAASEMR 295
NMP+EYSKYLQSLN++Q EAAC +S PL+IVAGPGSGKGI P+NILAMTFTT+AASEMR
Sbjct: 201 NMPEEYSKYLQSLNNRQREAACTHISIPLMIVAGPGSGKGIGPTNILAMTFTTSAASEMR 260
Query: 296 DRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAVRLL 355
DRIG + GKA AKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHG QRRAIIEAVRLL
Sbjct: 261 DRIGGVAGKAIAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGHQRRAIIEAVRLL 320
Query: 356 ENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMDVAK 415
E EK TD+ + + + + +L + + F+ AK
Sbjct: 321 EKEK--------TDVQSLHA----CKPAEALNGIILIYWCALFQ--------------AK 354
Query: 416 ASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDS 475
ASGKTPA+++K+GDEIGA+IL NYN IL+SCNALDYHDLISCSVKLL+ +P+VF+E QDS
Sbjct: 355 ASGKTPADYQKMGDEIGASILGNYNDILKSCNALDYHDLISCSVKLLTDYPDVFKECQDS 414
Query: 476 WKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFRKDFLNY 535
WKAI+VDEFQDTS MQY LL++LASHN ITIVGDDDQSIFSFNGADISGFDSFR DF NY
Sbjct: 415 WKAIVVDEFQDTSGMQYRLLRLLASHNHITIVGDDDQSIFSFNGADISGFDSFRLDFPNY 474
Query: 536 KEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFI 595
+EIRL +NYRSTR IVEAASSLIQ+N+KRC+ K+V TDNS GSKI IKEC E AQC+F+
Sbjct: 475 REIRLNKNYRSTRHIVEAASSLIQNNMKRCRFKDVVTDNSSGSKITIKECQTEHAQCSFV 534
Query: 596 IDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYRKKVVRA 655
+DKILE AS+G + +YG+IAILYRRQVSGK+FQ AFR+RK+PFN+HGVAFYRKKVV+A
Sbjct: 535 LDKILEMASDGSPAKQNYGNIAILYRRQVSGKLFQVAFRDRKMPFNVHGVAFYRKKVVKA 594
Query: 656 IIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFISAACDIFGA 715
IIAMLRT LP CDDGPYR+ FKA L EK+EKKRV+DH++KI TIRKCSFISAA DIF A
Sbjct: 595 IIAMLRTALPKCDDGPYRQAFKALLPFEKDEKKRVVDHVEKILTIRKCSFISAAKDIFSA 654
Query: 716 KISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQRAVVDFD 775
KISGTFKRSQL QGRKVLLTLEMI KLV RE SISAVITSVANMVPQ+YLLEQRAVVD D
Sbjct: 655 KISGTFKRSQLNQGRKVLLTLEMILKLVHREQSISAVITSVANMVPQQYLLEQRAVVDVD 714
Query: 776 GGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISER 835
GGKLLNEDNDLRSVLQYLL DV+DFLS + A K+ G V ++++GCI LK FIDYI+ER
Sbjct: 715 GGKLLNEDNDLRSVLQYLLDDVSDFLSMQ-CAIKDVGAVREEERGCITTLKDFIDYITER 773
Query: 836 ETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKGTSVE 895
E E+FR+ RH+NENSVTLTTIHQSKGLEWDIVF+ KANE+EIPL+HEFNG E GTS+E
Sbjct: 774 EKENFRSWRHENENSVTLTTIHQSKGLEWDIVFIIKANESEIPLLHEFNGITKENGTSIE 833
Query: 896 EERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAE---QSVQDQH 952
EERRLLYVAMTRARKKLFILY +D+NWQ+LQPSRFLKEIP HLRE+QAE + +Q +
Sbjct: 834 EERRLLYVAMTRARKKLFILYYTLDSNWQMLQPSRFLKEIPDHLREIQAEVCLRDLQTEP 893
Query: 953 ENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRFSV 1012
++I +GT T +LP E+ E DFL +Q + ES + ++ CNGNSFL+RF+V
Sbjct: 894 QDISKGTVNSTTSLPGEKQPSEVHRDPIDFLEIQNNNDLKESKDPVDVCNGNSFLKRFAV 953
Query: 1013 EDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSCLSSNEA 1072
DRS++SHLFHQWAKK+AFQ PKRLL+KV FVIDERLR+KKNKHKDVLRALK+CLS +EA
Sbjct: 954 VDRSVVSHLFHQWAKKQAFQNPKRLLDKVGFVIDERLRIKKNKHKDVLRALKACLSCDEA 1013
Query: 1073 FHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSLGCTEAP 1132
F YAEY LRWE+IPAD+RAHM+REKQE+FQK+RIENSM +SAPT KQI +L++LGCT P
Sbjct: 1014 FQYAEYALRWEQIPADERAHMMREKQEYFQKVRIENSMSTSAPTPKQIGYLQNLGCTVVP 1073
Query: 1133 ASRLHASRLIEQYKSL 1148
SRLHASRLIEQYKSL
Sbjct: 1074 TSRLHASRLIEQYKSL 1089
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490106|ref|XP_002277737.2| PREDICTED: ATP-dependent DNA helicase pcrA-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224114652|ref|XP_002332333.1| predicted protein [Populus trichocarpa] gi|222832580|gb|EEE71057.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356574720|ref|XP_003555493.1| PREDICTED: ATP-dependent DNA helicase pcrA-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|240256061|ref|NP_194242.6| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|332659614|gb|AEE85014.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|262385344|gb|ACY64665.1| SRS2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|297744967|emb|CBI38559.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449451960|ref|XP_004143728.1| PREDICTED: ATP-dependent DNA helicase PcrA-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449488705|ref|XP_004158147.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase PcrA-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|242045726|ref|XP_002460734.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor] gi|241924111|gb|EER97255.1| hypothetical protein SORBIDRAFT_02g034000 [Sorghum bicolor] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1148 | ||||||
| TAIR|locus:2117303 | 1149 | SRS2 "SUPPRESSOR OF RAD SIX-SC | 0.959 | 0.958 | 0.604 | 0.0 | |
| TIGR_CMR|DET_1196 | 738 | DET_1196 "ATP-dependent DNA he | 0.217 | 0.338 | 0.353 | 4e-54 | |
| UNIPROTKB|P0A5A3 | 771 | uvrD1 "ATP-dependent DNA helic | 0.207 | 0.308 | 0.343 | 9.4e-54 | |
| TIGR_CMR|GSU_3411 | 739 | GSU_3411 "ATP-dependent DNA he | 0.225 | 0.350 | 0.329 | 1.7e-52 | |
| UNIPROTKB|Q9KVH9 | 671 | VC0167 "ATP-dependent DNA heli | 0.208 | 0.356 | 0.338 | 3.6e-52 | |
| TIGR_CMR|VC_0167 | 671 | VC_0167 "ATP-dependent DNA hel | 0.208 | 0.356 | 0.338 | 3.6e-52 | |
| TIGR_CMR|CBU_2054 | 723 | CBU_2054 "DNA helicase II" [Co | 0.205 | 0.326 | 0.337 | 1.3e-50 | |
| TIGR_CMR|BA_0305 | 747 | BA_0305 "ATP-dependent DNA hel | 0.199 | 0.306 | 0.361 | 1.4e-49 | |
| UNIPROTKB|P09980 | 673 | rep "rep" [Escherichia coli K- | 0.293 | 0.500 | 0.294 | 5.8e-49 | |
| UNIPROTKB|Q9KVF6 | 723 | VC0190 "DNA helicase II" [Vibr | 0.221 | 0.351 | 0.307 | 7.6e-49 |
| TAIR|locus:2117303 SRS2 "SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3331 (1177.6 bits), Expect = 0., P = 0.
Identities = 702/1162 (60%), Positives = 841/1162 (72%)
Query: 20 SHRSRVSQNFRAAKPFLDRKRQ-RQAVDFDRQFPNKSRDSNSIPIESPDSITSVKRVPLA 78
SH R+SQ+FR+AKP LDRKR A + P + ++S + ES + PL
Sbjct: 16 SH-GRISQSFRSAKPLLDRKRPIENAPNSSNPLPQRMKES--MDTESVSHNINFNSTPLM 72
Query: 79 EIPVSTPSLQTINGVKSVVGEFSGISCVLN------DLSNERTNGVPLDI-------SDP 125
E+ +TP + ++S G C L DL E NG DI S+
Sbjct: 73 ELSANTPYKRLKPEIESYA---DGHPCGLRTPPPRFDLDKEIINGFQTDIYADVGSLSEA 129
Query: 126 FITPIKQPEFFNMSESFSMPSPLDDDFDDSILQEIDAICEKSAAKDVRKAQNSGIYEETH 185
F+TP+K+PE +S S S LDDDFDDSIL+EID ICE+SA K + + IY+ T
Sbjct: 130 FVTPLKEPERVTLSNGCSTSSILDDDFDDSILEEIDLICEQSARKAACQTPTTSIYQ-TP 188
Query: 186 QNDNSCTHLNASLESVTTNENIRMDISMDLAGDMKSSMEKTDTIQTIKT--QNMPDEYSK 243
DN + ASL+ E D ++ L D E+T TI +MPDE SK
Sbjct: 189 SKDNKSSDPKASLDFRDV-EKFEPDSNVKLKLD-----EETPTIAADPALLNSMPDECSK 242
Query: 244 YLQSLNDQQLEAACGDMSTPLLIVAGPGSGK--------------GISPSNILAMTFTTA 289
Y+ SLND+Q +AAC ++STPL+++AGPGSGK G+ PSNILAMTFT A
Sbjct: 243 YMLSLNDRQRDAACSNISTPLMVIAGPGSGKTSTMVGRVLVLLNEGLLPSNILAMTFTKA 302
Query: 290 AASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAII 349
A SEMR+RIG GK AK++TISTFHSFSLQLCR HA+KL+RTSEF +YGHGQQRRAII
Sbjct: 303 ATSEMRERIGKSAGKKAAKDITISTFHSFSLQLCRMHADKLQRTSEFSVYGHGQQRRAII 362
Query: 350 EAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409
EAVRL E EK K S + + G A + +S ++ KF
Sbjct: 363 EAVRLYEEEK----KNGSKTSVPCESGEGLNGAGAGAVCPEYAKDLSK----KWQKFVTQ 414
Query: 410 GMDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVF 469
G KASGK+P + RK+G+EIGA IL NYN IL++C+ALDYHDLISCSV LLS FPEVF
Sbjct: 415 G----KASGKSPEQCRKMGNEIGAKILGNYNDILKACDALDYHDLISCSVTLLSDFPEVF 470
Query: 470 QEYQDSWKAIIVDEFQDTSAMQYSLLQILASHNRITIVGDDDQSIFSFNGADISGFDSFR 529
+E QD+WKAIIVDEFQDTS MQY LL++L SHN ITIVGDDDQSIF FNGAD SGFDSFR
Sbjct: 471 KECQDTWKAIIVDEFQDTSTMQYKLLRMLGSHNHITIVGDDDQSIFGFNGADSSGFDSFR 530
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNED 589
+DF NYKE+RL +NYRS+R IVEAASS+I++N KRCQ K++ ++NS GSKI +KECHNE+
Sbjct: 531 RDFPNYKEVRLIKNYRSSRHIVEAASSIIKNNTKRCQSKSISSENSQGSKITVKECHNEE 590
Query: 590 AQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHGVAFYR 649
AQCA++IDKI+E ++G CS+G IAILYRRQVSGKVFQ AFR+RKIPFN+HGVAFYR
Sbjct: 591 AQCAYVIDKIIEITNDGSTPCCSHGDIAILYRRQVSGKVFQNAFRQRKIPFNVHGVAFYR 650
Query: 650 KKVVRAIIAMLRTTLPGCDDGPYRRVFKAFXXXXXXXXXRVIDHIDKISTIRKCSFISAA 709
KKVV+ I+AML+TT CDD YRRVFKA R+I+HI+KIST RKCSFISAA
Sbjct: 651 KKVVQVILAMLKTTFSECDDASYRRVFKALLPFEKEEKKRIIEHIEKISTSRKCSFISAA 710
Query: 710 CDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLLEQR 769
DIF AKISGTFKRSQLTQGRKVL TL+M++KLV RE S+SAV+T VANM+PQKYLLEQR
Sbjct: 711 SDIFNAKISGTFKRSQLTQGRKVLQTLDMVAKLVDREQSLSAVVTCVANMIPQKYLLEQR 770
Query: 770 AVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFI 829
AVVD DGGKLLNEDNDLRSVLQYL+ DV +F+ST T +EE + ++KKGC N L +FI
Sbjct: 771 AVVDNDGGKLLNEDNDLRSVLQYLMDDVAEFISTHCTTTEEEDAI-KEKKGC-NQLHSFI 828
Query: 830 DYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNE 889
+YISERETE+FR++R DNENSVTLTTIHQSKGLEWDIVF+ KANE EIPL+HE NG +E
Sbjct: 829 NYISERETENFRSRRRDNENSVTLTTIHQSKGLEWDIVFIVKANENEIPLLHESNGNASE 888
Query: 890 KGTSVEEERRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQ 949
GTS+EEERRLLYVAMTRARKKLF LYV +D+NWQ+LQPSRFLKEIP HL +VQ + SV
Sbjct: 889 SGTSLEEERRLLYVAMTRARKKLFFLYVTVDSNWQVLQPSRFLKEIPGHLLQVQGDMSVN 948
Query: 950 D---QHENIPEGTAQFTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSF 1006
D HEN+P T Q + + E+ L D +N+ A+ ES+ A NGN+F
Sbjct: 949 DCRKVHENLPNKTEQSVSSFGTDIKHEESKLTDNDVMNIPEDYASEESIAAY-ALNGNNF 1007
Query: 1007 LRRFSVEDRSIISHLFHQWAKKKAFQEPKRLLNKVDFVIDERLRVKKNKHKDVLRALKSC 1066
L+RF VE RS++SHLFH WAKK+AFQEPKRL++KV FVI ERL +KKNKHKDVLRALKS
Sbjct: 1008 LKRFDVEVRSVVSHLFHNWAKKQAFQEPKRLIDKVRFVIGERLAIKKNKHKDVLRALKSS 1067
Query: 1067 LSSNEAFHYAEYVLRWEKIPADQRAHMIREKQEHFQKLRIENSMGSSAPTSKQIAFLRSL 1126
L+S EAF YAE+VLRWE++PAD RAH++REKQEHFQKLRIENSMG+S TSKQIAFL SL
Sbjct: 1068 LTSEEAFQYAEHVLRWEQLPADTRAHIVREKQEHFQKLRIENSMGTSEATSKQIAFLHSL 1127
Query: 1127 GCTEAPASRLHASRLIEQYKSL 1148
GCT P SRLHASRLIEQYKSL
Sbjct: 1128 GCTVVPTSRLHASRLIEQYKSL 1149
|
|
| TIGR_CMR|DET_1196 DET_1196 "ATP-dependent DNA helicase PcrA" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P0A5A3 uvrD1 "ATP-dependent DNA helicase UvrD1" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_3411 GSU_3411 "ATP-dependent DNA helicase PcrA, putative" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KVH9 VC0167 "ATP-dependent DNA helicase Rep" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_0167 VC_0167 "ATP-dependent DNA helicase Rep" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CBU_2054 CBU_2054 "DNA helicase II" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|BA_0305 BA_0305 "ATP-dependent DNA helicase PcrA" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P09980 rep "rep" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KVF6 VC0190 "DNA helicase II" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.12 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1148 | |||
| COG0210 | 655 | COG0210, UvrD, Superfamily I DNA and RNA helicases | 1e-111 | |
| TIGR01073 | 726 | TIGR01073, pcrA, ATP-dependent DNA helicase PcrA | 4e-97 | |
| TIGR01074 | 664 | TIGR01074, rep, ATP-dependent DNA helicase Rep | 8e-78 | |
| TIGR01075 | 715 | TIGR01075, uvrD, DNA helicase II | 1e-73 | |
| PRK10919 | 672 | PRK10919, PRK10919, ATP-dependent DNA helicase Rep | 2e-60 | |
| pfam00580 | 267 | pfam00580, UvrD-helicase, UvrD/REP helicase N-term | 2e-59 | |
| pfam13361 | 342 | pfam13361, UvrD_C, UvrD-like helicase C-terminal d | 6e-41 | |
| PRK11773 | 721 | PRK11773, uvrD, DNA-dependent helicase II; Provisi | 2e-37 | |
| COG1074 | 1139 | COG1074, RecB, ATP-dependent exoDNAse (exonuclease | 2e-21 | |
| PRK11054 | 684 | PRK11054, helD, DNA helicase IV; Provisional | 5e-16 | |
| PRK11773 | 721 | PRK11773, uvrD, DNA-dependent helicase II; Provisi | 9e-15 | |
| PRK11773 | 721 | PRK11773, uvrD, DNA-dependent helicase II; Provisi | 1e-13 | |
| TIGR00609 | 1087 | TIGR00609, recB, exodeoxyribonuclease V, beta subu | 4e-13 | |
| TIGR02784 | 1135 | TIGR02784, addA_alphas, double-strand break repair | 9e-13 | |
| pfam13538 | 105 | pfam13538, UvrD_C_2, Family description | 1e-12 | |
| TIGR02785 | 1230 | TIGR02785, addA_Gpos, helicase-exonuclease AddAB, | 3e-11 | |
| COG1074 | 1139 | COG1074, RecB, ATP-dependent exoDNAse (exonuclease | 2e-10 | |
| PRK13909 | 910 | PRK13909, PRK13909, putative recombination protein | 6e-10 | |
| TIGR00609 | 1087 | TIGR00609, recB, exodeoxyribonuclease V, beta subu | 1e-09 | |
| PRK11054 | 684 | PRK11054, helD, DNA helicase IV; Provisional | 6e-09 | |
| TIGR02785 | 1230 | TIGR02785, addA_Gpos, helicase-exonuclease AddAB, | 7e-09 | |
| TIGR02784 | 1135 | TIGR02784, addA_alphas, double-strand break repair | 5e-07 | |
| COG3973 | 747 | COG3973, COG3973, Superfamily I DNA and RNA helica | 5e-06 | |
| TIGR02785 | 1230 | TIGR02785, addA_Gpos, helicase-exonuclease AddAB, | 1e-05 | |
| COG1074 | 1139 | COG1074, RecB, ATP-dependent exoDNAse (exonuclease | 3e-05 | |
| PRK10876 | 1181 | PRK10876, recB, exonuclease V subunit beta; Provis | 8e-05 | |
| PRK13909 | 910 | PRK13909, PRK13909, putative recombination protein | 3e-04 | |
| PRK10876 | 1181 | PRK10876, recB, exonuclease V subunit beta; Provis | 0.001 | |
| COG3857 | 1108 | COG3857, AddB, ATP-dependent nuclease, subunit B [ | 0.001 | |
| TIGR02784 | 1135 | TIGR02784, addA_alphas, double-strand break repair | 0.003 |
| >gnl|CDD|223288 COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 361 bits (929), Expect = e-111
Identities = 197/722 (27%), Positives = 321/722 (44%), Gaps = 96/722 (13%)
Query: 246 QSLNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAA 290
LN +Q EA PLL++AG GSGK G+ P ILA+TFT A
Sbjct: 1 SKLNPEQREAVLHPDG-PLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKA 59
Query: 291 ASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIE 350
A+EMR+R+ ++G A+ LT+ TFHSF+L++ R H E+L + F I Q I E
Sbjct: 60 AAEMRERLLKLLGLPAAEGLTVGTFHSFALRILRRHGERLGLNANFTILDSDDQLALIKE 119
Query: 351 AVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410
+R N + ++ +
Sbjct: 120 LLRRELNLDD-------------------KELLPREALRYI------------SEAKNAL 148
Query: 411 MDVAKASGKTPAEFRKIGDEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQ 470
+ +AS A + ++ A + E Y +LR NALD+ DL+ +++LL PEV +
Sbjct: 149 LSPLEASALLLAAIKSEAEKKLAELYEEYQELLRLNNALDFDDLLLLALRLLEENPEVLE 208
Query: 471 EYQDSWKAIIVDEFQDTSAMQYSLLQILASHN-RITIVGDDDQSIFSFNGADISGFDSFR 529
Q ++ I+VDEFQDT+ +QY LL++LA + + +VGDDDQSI+ F GAD F
Sbjct: 209 ALQARFRYILVDEFQDTNPLQYELLKLLAGNAANLFVVGDDDQSIYGFRGADPENILDFE 268
Query: 530 KDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTD-NSHGSKIIIKECHNE 588
KDF K I+L +NYRST I+ AA+ +I +N KR Q K ++T+ G K+++ ++E
Sbjct: 269 KDFPAAKVIKLEQNYRSTPNILAAANKVIANNKKR-QAKTLRTEVEGSGEKVVLLLANDE 327
Query: 589 DAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNI--HGVA 646
+ + +I +I G +Y IAILYR ++ + A R IP+ I G +
Sbjct: 328 EDEARWIASEIDALIEIGKV---NYSDIAILYRTNAQSRLIEEALRAAGIPYRIVIGGTS 384
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVIDHIDKISTIRKCSFI 706
F+ +K ++ ++A LR + + L ++ + + +++ R S +
Sbjct: 385 FFERKEIKDLLAYLRL---VLNPDDDAAFLRILNLPKRGIGDATLKKLLELARERNLSLL 441
Query: 707 SAACDIFGAKISGTFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMVPQKYLL 766
A + L +E + + + ++ +
Sbjct: 442 EALKALL---SFIRLSERGLALLLDFAELIEELREAILLSTALELI-------------- 484
Query: 767 EQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLK 826
+ + + L E L + L ++ + L K + L+
Sbjct: 485 -RELLEALGYLEALLEAGSLVAAEDR-LENLEELLD----VLKRYAEPRES-------LR 531
Query: 827 AFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGA 886
AF+ +S + + D + V L TIH +KGLE+ VF+ E P + +
Sbjct: 532 AFLSELSLLANDE-EEEEPDEDGQVNLMTIHAAKGLEFPYVFLVGLEEGLFPA----DRS 586
Query: 887 VNEKGTSVEEERRLLYVAMTRARKKLFILYVMMDANW---QLLQPSRFLKEIPHHLREVQ 943
++E +EEERRLLYVA+TRA+KKL++ Y W +PSRF+ E+P +
Sbjct: 587 LDEGDEPLEEERRLLYVAITRAKKKLYLTYAASRKLWGKEVEEEPSRFVSELPAEDLLLL 646
Query: 944 AE 945
E
Sbjct: 647 GE 648
|
Length = 655 |
| >gnl|CDD|233261 TIGR01073, pcrA, ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
| >gnl|CDD|130146 TIGR01074, rep, ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
| >gnl|CDD|130147 TIGR01075, uvrD, DNA helicase II | Back alignment and domain information |
|---|
| >gnl|CDD|182838 PRK10919, PRK10919, ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216004 pfam00580, UvrD-helicase, UvrD/REP helicase N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|222073 pfam13361, UvrD_C, UvrD-like helicase C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|236976 PRK11773, uvrD, DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|182930 PRK11054, helD, DNA helicase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236976 PRK11773, uvrD, DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236976 PRK11773, uvrD, DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233050 TIGR00609, recB, exodeoxyribonuclease V, beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|222209 pfam13538, UvrD_C_2, Family description | Back alignment and domain information |
|---|
| >gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit, Firmicutes type | Back alignment and domain information |
|---|
| >gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|237554 PRK13909, PRK13909, putative recombination protein RecB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233050 TIGR00609, recB, exodeoxyribonuclease V, beta subunit | Back alignment and domain information |
|---|
| >gnl|CDD|182930 PRK11054, helD, DNA helicase IV; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit, Firmicutes type | Back alignment and domain information |
|---|
| >gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|226482 COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit, Firmicutes type | Back alignment and domain information |
|---|
| >gnl|CDD|224000 COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|236784 PRK10876, recB, exonuclease V subunit beta; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237554 PRK13909, PRK13909, putative recombination protein RecB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236784 PRK10876, recB, exonuclease V subunit beta; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226375 COG3857, AddB, ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|234012 TIGR02784, addA_alphas, double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1148 | |||
| TIGR02773 | 1158 | addB_Gpos ATP-dependent nuclease subunit B. DNA re | 100.0 | |
| TIGR02774 | 1076 | rexB_recomb ATP-dependent nuclease subunit B. DNA | 100.0 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 100.0 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 100.0 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 100.0 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 100.0 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 100.0 | |
| COG3857 | 1108 | AddB ATP-dependent nuclease, subunit B [DNA replic | 100.0 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 100.0 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 100.0 | |
| TIGR02784 | 1141 | addA_alphas double-strand break repair helicase Ad | 100.0 | |
| TIGR00609 | 1087 | recB exodeoxyribonuclease V, beta subunit. All pro | 100.0 | |
| PRK13909 | 910 | putative recombination protein RecB; Provisional | 100.0 | |
| PRK10876 | 1181 | recB exonuclease V subunit beta; Provisional | 100.0 | |
| COG1074 | 1139 | RecB ATP-dependent exoDNAse (exonuclease V) beta s | 100.0 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 100.0 | |
| TIGR02786 | 1021 | addB_alphas double-strand break repair protein Add | 100.0 | |
| TIGR03623 | 874 | probable DNA repair protein. Members of this prote | 100.0 | |
| PF13361 | 351 | UvrD_C: UvrD-like helicase C-terminal domain; PDB: | 100.0 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 100.0 | |
| TIGR01450 | 1067 | recC exodeoxyribonuclease V, gamma subunit. This m | 99.94 | |
| PRK11069 | 1122 | recC exonuclease V subunit gamma; Provisional | 99.94 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 99.93 | |
| KOG1803 | 649 | consensus DNA helicase [Replication, recombination | 99.91 | |
| PF04257 | 805 | Exonuc_V_gamma: Exodeoxyribonuclease V, gamma subu | 99.91 | |
| KOG2108 | 853 | consensus 3'-5' DNA helicase [Replication, recombi | 99.88 | |
| KOG1805 | 1100 | consensus DNA replication helicase [Replication, r | 99.8 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 99.8 | |
| KOG1802 | 935 | consensus RNA helicase nonsense mRNA reducing fact | 99.77 | |
| COG3972 | 660 | Superfamily I DNA and RNA helicases [General funct | 99.76 | |
| COG1330 | 1078 | RecC Exonuclease V gamma subunit [DNA replication, | 99.43 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 99.42 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 99.31 | |
| KOG2108 | 853 | consensus 3'-5' DNA helicase [Replication, recombi | 99.26 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 99.24 | |
| KOG1807 | 1025 | consensus Helicases [Replication, recombination an | 98.96 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 98.82 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 98.77 | |
| PF13087 | 200 | AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP | 98.68 | |
| COG3893 | 697 | Inactivated superfamily I helicase [DNA replicatio | 98.62 | |
| COG1112 | 767 | Superfamily I DNA and RNA helicases and helicase s | 98.62 | |
| PF13538 | 104 | UvrD_C_2: UvrD-like helicase C-terminal domain; PD | 98.6 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 98.41 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 98.27 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 98.2 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 98.17 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 98.01 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 97.74 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 97.68 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 97.63 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.54 | |
| KOG1806 | 1320 | consensus DEAD box containing helicases [Replicati | 97.21 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 97.2 | |
| KOG1804 | 775 | consensus RNA helicase [RNA processing and modific | 97.12 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 96.96 | |
| PF12705 | 257 | PDDEXK_1: PD-(D/E)XK nuclease superfamily; PDB: 1W | 96.96 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 96.14 | |
| KOG1801 | 827 | consensus tRNA-splicing endonuclease positive effe | 95.69 | |
| COG0507 | 696 | RecD ATP-dependent exoDNAse (exonuclease V), alpha | 95.68 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 94.03 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 93.9 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 93.9 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 93.7 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 93.62 | |
| PHA03311 | 828 | helicase-primase subunit BBLF4; Provisional | 93.23 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 92.92 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 92.7 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 92.37 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 92.16 | |
| PTZ00424 | 401 | helicase 45; Provisional | 90.67 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 90.13 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 89.27 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 89.23 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 88.93 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 88.58 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 87.41 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 87.11 | |
| COG2887 | 269 | RecB family exonuclease [DNA replication, recombin | 86.39 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 85.69 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 85.43 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 85.16 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 84.83 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 84.64 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 83.57 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 83.04 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 82.68 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 82.36 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 82.17 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 82.03 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 81.9 | |
| PF08696 | 209 | Dna2: DNA replication factor Dna2; InterPro: IPR01 | 81.54 | |
| PF12684 | 237 | DUF3799: PDDEXK-like domain of unknown function (D | 81.52 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 81.04 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 80.98 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 80.78 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 80.46 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 80.28 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 80.12 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 80.09 |
| >TIGR02773 addB_Gpos ATP-dependent nuclease subunit B | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-78 Score=790.94 Aligned_cols=733 Identities=14% Similarity=0.175 Sum_probs=574.6
Q ss_pred EEEEecCCCCC-------------CCCCCCEEEEeccHHHHHHHHHHHHhhhccccCCCceEechHHHHHHHHHHHHHHh
Q 001127 264 LLIVAGPGSGK-------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKL 330 (1148)
Q Consensus 264 ~lI~G~AGSGK-------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~~~~~~v~V~Tfhs~a~rIl~~~~~~~ 330 (1148)
-+|+|+||||| ..+.+.-.++.+|+++++++++|+.+.++..+..+++|.||||||++|+++.++..
T Consensus 4 ~fi~G~aGSGKT~~l~~ri~~~l~~~~~~~~~illVPeq~TF~~e~rl~~~~~~~~~~~v~V~SF~rLa~~ilr~~~~~~ 83 (1158)
T TIGR02773 4 RFIYGRAGTGKSTFCIDEIKQKIKENPLGKPIILIVPDQMTFQMEQALLNDIELNGSLRAQVLSFSRLAWRVFQETGGLT 83 (1158)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHhhCCCCCcEEEEcCCcccHHHHHHHHHhccccCeEEEEEeeeHHHHHHHHHHcCCcc
Confidence 37999999999 22346667777788888999999999887666788999999999999999966322
Q ss_pred cCCCCceecChHHHHHHHHHHHHHHHhhhHHHHhhhhccccccccchhhhHHHHHHHHHHhhhhhhhhHHhhhHHHHHhh
Q 001127 331 ERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDG 410 (1148)
Q Consensus 331 ~~~~~~~i~~~~~~~~~l~~il~~~~~~~~~~~~~~~~d~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~~ 410 (1148)
. .++++.++.+++++++..++.++ ..|..... ..+|.+.+.+.
T Consensus 84 ~-----~~ld~~g~~~ll~~il~~~~~~l---------------~~f~~~~~-----------------~~gf~~~l~~~ 126 (1158)
T TIGR02773 84 R-----TFLTQAGKEMMIRKLLEEHKDEL---------------KVYQKASR-----------------QKGFSAKLSEM 126 (1158)
T ss_pred c-----ccccHHHHHHHHHHHHHHHHhHH---------------HHHHhhcC-----------------CccHHHHHHHH
Confidence 2 58999999999999999887765 34444333 56789999999
Q ss_pred HHHHHHcCCCHHHHHhhHHH------------HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcccHHHHHHhccCcCE
Q 001127 411 MDVAKASGKTPAEFRKIGDE------------IGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEYQDSWKA 478 (1148)
Q Consensus 411 i~~~k~~~~~~e~l~~~~~~------------~~~~iy~~Y~~~L~~~~~iD~~Dll~~a~~lL~~~~~l~~~l~~~fd~ 478 (1148)
|+++|+++++|+++.+.... ..+.+|..|++.+++ +++|++|++..++..|..++.+ +..+
T Consensus 127 Iselk~~~i~pe~l~~~~~~~~~~~~l~~Kl~dl~~IY~~Ye~~l~~-~~iD~dDlL~~~~~~L~~~~~l------~~~~ 199 (1158)
T TIGR02773 127 ITEFKRYEVTPEDLRTFAEDIEDSTRLKEKLEDLSLIYQYFEERLHG-EYIDSEDQLNLLIEKLSQSEWI------KGAE 199 (1158)
T ss_pred HHHHHHcCCCHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHhccCccc------CCCE
Confidence 99999999999998654221 247899999999987 7999999999999999877765 3469
Q ss_pred EEEecCccCCHHHHHHHHHHHc-CCcEEEEcCCCCc--------ccccCCCChHHHHHHHHhcCC--ceEEEeccCCCC-
Q 001127 479 IIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQS--------IFSFNGADISGFDSFRKDFLN--YKEIRLTRNYRS- 546 (1148)
Q Consensus 479 IiIDEfQDftp~q~~lL~~L~~-~~~l~lvGD~~Qs--------Iy~frga~~~lf~~l~~~~~~--~~~~~L~~nyRs- 546 (1148)
|+|||||||||+|+.+|+.|++ +.+++++||.+|+ ||.|++.....+..+...++. ...+.+..+++.
T Consensus 200 I~VDeFqdf~~~Q~~lI~~L~~~~~~v~Vv~d~Dq~~~~~~~~~lf~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 279 (1158)
T TIGR02773 200 IYIDGFHSFTPQEYSVIGALMKKAKKVTVTLTLDGPKSLEDELSLFRATSETYYRLKELAKELGIEVEEPIFLNEYRPNK 279 (1158)
T ss_pred EEEccCCCCCHHHHHHHHHHHHhCCcEEEEEEeCCccccCCccccchhHHHHHHHHHHHHHHcCCCcccccccccccCCC
Confidence 9999999999999999999997 5589999998887 565555555555555554431 133445556653
Q ss_pred -hhHHHHHHHhhhhhhhhhcccccccccCCCCceeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcEEEEEec-Cc
Q 001127 547 -TRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAILYRR-QV 624 (1148)
Q Consensus 547 -~~~I~~~an~ll~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~~~~~~g~~~~DIAVL~r~-~~ 624 (1148)
++.+..+...++..... .....+..|.++.+.+..+|+++|+++|++++++ +|++|+|||||+|+ +.
T Consensus 280 ~~~~l~~Lek~l~~~~~~--------~~~~~~~~I~i~~~~~~~~Eae~va~~I~~l~~~---~g~~~~DIAVL~R~~~~ 348 (1158)
T TIGR02773 280 KNKELAHLEKQFDARPFN--------AYIEEDGSISIFEANNRRAEVEGVARQILRLTRD---KQYRYQDIAILTRDLED 348 (1158)
T ss_pred CCHHHHHHHHHHhhCCCC--------CCCCCCCCeEEEEcCCHHHHHHHHHHHHHHHHHc---CCCChhheEEEeCCHHH
Confidence 66777777766654211 1123345699999999999999999999999876 69999999999999 99
Q ss_pred ChHHHHHHHHHCCCCeEEc-CccccccHHHHHHHHHHHHhCCCCCCchHHHHHHH-hh-hhhHH-HHHHHHHHHHHHHhh
Q 001127 625 SGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKA-FL-LLEKE-EKKRVIDHIDKISTI 700 (1148)
Q Consensus 625 ~~~~l~~~L~~~gIP~~i~-~~~l~~~p~v~~i~slL~~~~~~~d~~~~~~llk~-L~-~~~~~-~~~~~id~Leny~~~ 700 (1148)
|...+..+|.++||||+++ +.++++||++++++++|+++.++++..++.+++++ +. +.... ..+..++.|+||+.+
T Consensus 349 y~~~i~~~f~~~~IP~~i~~~~~~~~~p~i~~ila~L~l~~~~~~~e~~~rlL~~~l~~~~~~~~~~~~~i~~Len~~~~ 428 (1158)
T TIGR02773 349 YAKLVEAVFSDYEIPYFIDKKRSMTHHPLIEFIRSILEVIQKNWRYEPMFRYLKTGLLFNEFHFIDSAELIDLLENYVLE 428 (1158)
T ss_pred HHHHHHHHHHhCCCCeEEecCcccccCcHHHHHHHHHHHhhcCCCHHHHHHHHhcccccccccccccHHHHHHHHHHHHH
Confidence 9999999999999999998 68999999999999999999999999999999998 22 11111 125668999999999
Q ss_pred hccchHHHHhh--hhhcc----ccc---------hhhhhhhHhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHhhc-----
Q 001127 701 RKCSFISAACD--IFGAK----ISG---------TFKRSQLTQGRKVLLTLEMISKLVRREPSISAVITSVANMV----- 760 (1148)
Q Consensus 701 ~gi~~~~~~~~--~~~~~----~~~---------~~~~~~~~~~r~~~~~l~~l~~~~~~~~~~~~~~~~l~~~~----- 760 (1148)
+|++|...|.+ .|... +.. .........++.+..++..+.+.+....++.+++..+|+++
T Consensus 429 ~gi~g~~~w~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~n~~r~~~~~~l~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 508 (1158)
T TIGR02773 429 NGIKGKKRWWKEKWFSYRRFRGLSRKEAQTDEEREDQEQVNELREDIVDPLLTFEKQMKKAKTVKEFATALYEFLEELDL 508 (1158)
T ss_pred hCCCCeehhccCCCeeeecccccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCc
Confidence 99998634422 23211 000 00011122344667788888887777788999999999984
Q ss_pred HHHHHHHHhhhcccccccccccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccccccchHHHHHHHHHhhhhhhh
Q 001127 761 PQKYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYISERETEHF 840 (1148)
Q Consensus 761 ~~~~l~~~~~~~~~~~~~~~~e~~q~~~vl~~lld~l~e~l~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~L~~~~~~~~ 840 (1148)
++.+..|...+...+....+.++.|+|+.++.+||++++.++++ .+++.+|.++|..++.+..
T Consensus 509 ~~~l~~w~~~~~~~g~~~~a~e~~qvw~~v~~lld~~~~~~g~e-----------------~~~l~~f~~~l~~gl~~~~ 571 (1158)
T TIGR02773 509 PDKLEKHRDYFDEDGRHEEAREYEQIWDAVIQLLDEMVEVLGNE-----------------EMDLNRFQEVIDIGLEQLE 571 (1158)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------ccCHHHHHHHHHHHHhhCe
Confidence 33333333333333444467889999999999999999988765 7899999999999999888
Q ss_pred cccCCCCCCcEEEEccccccCCCCCEEEEeecCCCCCccccccCCccCccc----------------ccHHHHHHHHHHH
Q 001127 841 RTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEKG----------------TSVEEERRLLYVA 904 (1148)
Q Consensus 841 ~~~ip~~~D~V~V~Tih~sKGlE~~~VfV~Glneg~~P~~~~~~g~l~d~e----------------~~l~EErrL~YVA 904 (1148)
++.+|++.|+|+|+|+|++||.+|++|||+|+|||+||.....+|++++.+ +...+|+++||+|
T Consensus 572 ~~~ip~~~d~V~v~~~~~~r~~~~k~v~vlG~ndg~~P~~~~~~~ll~d~er~~L~~~g~~l~~~~~~~~~~e~~~~y~a 651 (1158)
T TIGR02773 572 FSLIPPALDQVSVGTMDRAKSDNTKVIYLLGMNDGVMPARSKEEGILSDEERELLEQQGVELSPTSKIKIFDEQFLVYTA 651 (1158)
T ss_pred eCCCCCCcCEEEEeccccccccCcCEEEEeCCCCCcCCCCCCCCCCcCHHHHHHHHHCCCCCCCChHHHhhcCcHHHHHH
Confidence 899999999999999999999999999999999999999988888876432 4567899999999
Q ss_pred HhcccceEEEEEEeecccccccCCchhHHhhhhhhHHHHhhhhccccC---------CCchhhhhH--------------
Q 001127 905 MTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQDQH---------ENIPEGTAQ-------------- 961 (1148)
Q Consensus 905 lTRAk~~L~LSy~~~d~~g~~~~PS~fl~~l~~~f~~~~~~~~~~~~~---------~~~~~~~~~-------------- 961 (1148)
+|||+++|||||+..+.+|++..||+||.+|..+||.+........+. .++..+...
T Consensus 652 lt~a~~~L~lSy~~~~~~g~~~~pS~~i~~l~~~fp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 731 (1158)
T TIGR02773 652 FTSASERLKISYPLADAEGKSLRPSIIIHRLKGLFPKLKESNLLYDPESDAEQLSYVSHKLPTLNELTSQLKKWKRGYPI 731 (1158)
T ss_pred hcCccceEEEEEECCCCCCCccCcCHHHHHHHHhCccccccccccCccchhhhhhHhcChHHHHHHHHHHHHHhhccCCc
Confidence 999999999999999999999999999999999998643221111000 011111111
Q ss_pred -----------------------hhhcCCCccCCCcCCCcccccccccCcccChhhhhHHhhChhhhHHHhhcCcc----
Q 001127 962 -----------------------FTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRFSVED---- 1014 (1148)
Q Consensus 962 -----------------------L~~~~~~~~p~~~~~~~~~~~L~~~~~~~SvSrlE~~~~CPf~~Fl~~~Gl~~---- 1014 (1148)
+..++.+.++...+++..++.|||+.+++|||+||+|++|||+||+ +|||++
T Consensus 732 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~n~~~~l~~~~~~~Lyg~~l~~SvS~le~~~~Cpf~~F~-~ygL~l~er~ 810 (1158)
T TIGR02773 732 IDVWWDVYQWYRENDKWKNGLEYVLSGLTYDNETKKLQEPKAKKLYGETIQASVSRLEKYNACPFAHFA-QYGLKLKERK 810 (1158)
T ss_pred cHHHHHHHHHHHhChhhHHHHHHHHHhhhccCCcccCCHHHHHHHhCCCcccChHHHHHHHhChHHHHH-HHhcCCCccc
Confidence 1233344455557778888999999999999999999999999999 999843
Q ss_pred -----cchhhhHHHHHHHHhhcC-----------CHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHhcc
Q 001127 1015 -----RSIISHLFHQWAKKKAFQ-----------EPKRLLNKVDFVIDE-------RLRVKKNKHKDVLRALKSCLSS 1069 (1148)
Q Consensus 1015 -----a~~iGtl~H~~le~~~~~-----------~~~~~~~~~~~~v~e-------~~~~s~~r~~~~~~~l~~~l~~ 1069 (1148)
++++|+++|++++.+... +.+++.+++++++++ .+..+++|++|+.++|++++..
T Consensus 811 ~~~l~~~~~G~~~H~~Le~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~rl~~~~~~ 888 (1158)
T TIGR02773 811 IYKLEAPDLGQIFHEALKEISDELKEEDLDWSDLTKEQCRALANEAVENLVPKIQHEILLSSKRYRYVQKRLKRIVTR 888 (1158)
T ss_pred ccCCChhhhHHHHHHHHHHHHHHHHHcCCChHhcCHHHHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHH
Confidence 789999999999987654 667788888887776 2447999999999999998864
|
DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. |
| >TIGR02774 rexB_recomb ATP-dependent nuclease subunit B | Back alignment and domain information |
|---|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
| >COG3857 AddB ATP-dependent nuclease, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
| >TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
| >TIGR00609 recB exodeoxyribonuclease V, beta subunit | Back alignment and domain information |
|---|
| >PRK13909 putative recombination protein RecB; Provisional | Back alignment and domain information |
|---|
| >PRK10876 recB exonuclease V subunit beta; Provisional | Back alignment and domain information |
|---|
| >COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
| >TIGR02786 addB_alphas double-strand break repair protein AddB, alphaproteobacterial type | Back alignment and domain information |
|---|
| >TIGR03623 probable DNA repair protein | Back alignment and domain information |
|---|
| >PF13361 UvrD_C: UvrD-like helicase C-terminal domain; PDB: 1UAA_B 3U4Q_A 3U44_A 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A | Back alignment and domain information |
|---|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
| >TIGR01450 recC exodeoxyribonuclease V, gamma subunit | Back alignment and domain information |
|---|
| >PRK11069 recC exonuclease V subunit gamma; Provisional | Back alignment and domain information |
|---|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
| >KOG1803 consensus DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF04257 Exonuc_V_gamma: Exodeoxyribonuclease V, gamma subunit ; PDB: 1W36_F 3K70_C | Back alignment and domain information |
|---|
| >KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG1805 consensus DNA replication helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG3972 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
| >COG1330 RecC Exonuclease V gamma subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
| >KOG2108 consensus 3'-5' DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
| >KOG1807 consensus Helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >PF13087 AAA_12: AAA domain; PDB: 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A 2XZL_A | Back alignment and domain information |
|---|
| >COG3893 Inactivated superfamily I helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1112 Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF13538 UvrD_C_2: UvrD-like helicase C-terminal domain; PDB: 1W36_G 3K70_G 3DMN_A 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
| >KOG1804 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
| >PF12705 PDDEXK_1: PD-(D/E)XK nuclease superfamily; PDB: 1W36_B 3K70_B 3U4Q_A 3U44_A | Back alignment and domain information |
|---|
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
| >KOG1801 consensus tRNA-splicing endonuclease positive effector (SEN1) [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG0507 RecD ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
| >PHA03311 helicase-primase subunit BBLF4; Provisional | Back alignment and domain information |
|---|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >COG2887 RecB family exonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >PF08696 Dna2: DNA replication factor Dna2; InterPro: IPR014808 Dna2 is a DNA replication factor with single-stranded DNA-dependent ATPase, ATP-dependent nuclease, (5'-flap endonuclease) and helicase activities | Back alignment and domain information |
|---|
| >PF12684 DUF3799: PDDEXK-like domain of unknown function (DUF3799); InterPro: IPR024432 This entry represents a PDDEXK-like domain of unknown function found in proteins from bacteria and viruses | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1148 | ||||
| 3pjr_A | 724 | Helicase Substrate Complex Length = 724 | 2e-56 | ||
| 2is1_A | 680 | Crystal Structure Of Uvrd-Dna-So4 Complex Length = | 2e-55 | ||
| 3lfu_A | 647 | Crystal Structure Of E. Coli Uvrd Length = 647 | 4e-55 | ||
| 1uaa_A | 673 | E. Coli Rep HelicaseDNA COMPLEX Length = 673 | 6e-52 | ||
| 2pjr_A | 548 | Helicase Product Complex Length = 548 | 8e-49 | ||
| 1qhh_B | 273 | Structure Of Dna Helicase With Adpnp Length = 273 | 3e-34 | ||
| 1qhh_A | 167 | Structure Of Dna Helicase With Adpnp Length = 167 | 5e-11 | ||
| 1qhh_D | 169 | Structure Of Dna Helicase With Adpnp Length = 169 | 8e-08 | ||
| 2pjr_B | 95 | Helicase Product Complex Length = 95 | 1e-07 | ||
| 3u44_A | 1232 | Crystal Structure Of Addab-Dna Complex Length = 123 | 2e-05 | ||
| 3u44_A | 1232 | Crystal Structure Of Addab-Dna Complex Length = 123 | 3e-04 | ||
| 1w36_B | 1180 | Recbcd:dna Complex Length = 1180 | 5e-05 |
| >pdb|3PJR|A Chain A, Helicase Substrate Complex Length = 724 | Back alignment and structure |
|
| >pdb|2IS1|A Chain A, Crystal Structure Of Uvrd-Dna-So4 Complex Length = 680 | Back alignment and structure |
| >pdb|3LFU|A Chain A, Crystal Structure Of E. Coli Uvrd Length = 647 | Back alignment and structure |
| >pdb|1UAA|A Chain A, E. Coli Rep HelicaseDNA COMPLEX Length = 673 | Back alignment and structure |
| >pdb|2PJR|A Chain A, Helicase Product Complex Length = 548 | Back alignment and structure |
| >pdb|1QHH|B Chain B, Structure Of Dna Helicase With Adpnp Length = 273 | Back alignment and structure |
| >pdb|1QHH|A Chain A, Structure Of Dna Helicase With Adpnp Length = 167 | Back alignment and structure |
| >pdb|1QHH|D Chain D, Structure Of Dna Helicase With Adpnp Length = 169 | Back alignment and structure |
| >pdb|2PJR|B Chain B, Helicase Product Complex Length = 95 | Back alignment and structure |
| >pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex Length = 1232 | Back alignment and structure |
| >pdb|3U44|A Chain A, Crystal Structure Of Addab-Dna Complex Length = 1232 | Back alignment and structure |
| >pdb|1W36|B Chain B, Recbcd:dna Complex Length = 1180 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 Length = 673 | Back alignment and structure |
|---|
Score = 398 bits (1025), Expect = e-125
Identities = 181/750 (24%), Positives = 320/750 (42%), Gaps = 127/750 (16%)
Query: 248 LNDQQLEAACGDMSTPLLIVAGPGSGK---------------GISPSNILAMTFTTAAAS 292
LN Q +A ++ P L++AG GSGK G +I A+TFT AA
Sbjct: 3 LNPGQQQAVE-FVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAR 61
Query: 293 EMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEKLERTSEFLIYGHGQQRRAIIEAV 352
EM++R+G +G+ A+ L ISTFH+ L + + L + F ++ Q
Sbjct: 62 EMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLA------ 115
Query: 353 RLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERDGMD 412
++K ++ ++ D ++ + ++
Sbjct: 116 ---------LLKELTEGLIEDDKV--LLQQLISTISN----------------------- 141
Query: 413 VAKASGKTPAEFRKIG----DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEV 468
K KTP++ D I A Y+ L++CN LD+ DLI LL EV
Sbjct: 142 -WKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQANEEV 200
Query: 469 FQEYQDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRITIVGDDDQSIFSFNGADISGFDS 527
+ +Q+ + ++VDE+QDT+ QY L+++L R T+VGDDDQSI+S+ GA
Sbjct: 201 RKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVL 260
Query: 528 FRKDFLNYKEIRLTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHN 587
+DF K I+L +NYRS+ I++AA+ LI +N + K + ++ +G+++ + +N
Sbjct: 261 LSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVFE-KRLFSELGYGAELKVLSANN 319
Query: 588 EDAQCAFIIDKILEHASNGPASICSYGSIAILYRRQVSGKVFQTAFRERKIPFNIHG-VA 646
E+ + + +++ H Y AILYR +VF+ + +IP+ I G +
Sbjct: 320 EEHEAERVTGELIAHHFVNKT---QYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTS 376
Query: 647 FYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKAFLLLEKEEKKRVI-----DHIDKISTIR 701
F+ + ++ ++A LR DD + R+ KR I + + + R
Sbjct: 377 FFSRPEIKDLLAYLRVLTNPDDDSAFLRIVN--------TPKREIGPATLKKLGEWAMTR 428
Query: 702 KCSFISAACDI-FGAKISGTFKRSQLTQGRKVLLT-LEMISKLVRREPSISAVITSVANM 759
S +A+ D+ +SG +G + L ++++ R I +V ++
Sbjct: 429 NKSMFTASFDMGLSQTLSG--------RGYEALTRFTHWLAEIQRLAEREP--IAAVRDL 478
Query: 760 VPQ----KYLLEQRAVVDFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVD 815
+ +L E ++ N + L + +T+ EG+
Sbjct: 479 IHGMDYESWLYETSPSPKAAEMRMKN--------VNQLFSWMTEM---------LEGSEL 521
Query: 816 QDKKGCINVLKAFIDYISERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANET 875
+ L + + R + + + V L T+H SKGLE+ V++ E
Sbjct: 522 DEPMT----LTQVVTRFT-LRDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEG 576
Query: 876 EIPLVHEFNGAVNEKGTSVEEERRLLYVAMTRARKKLFILYV---MMDANWQLLQPSRFL 932
+P H +++E ++EERRL YV +TRA+K+L +PSRFL
Sbjct: 577 FLP--H--QSSIDEDN--IDEERRLAYVGITRAQKELTFTLCKERRQYGELVRPEPSRFL 630
Query: 933 KEIPHHLREVQAEQSVQDQHENIPEGTAQF 962
E+P + E+ V E + +G +
Sbjct: 631 LELPQDDLIWEQERKVVSAEERMQKGQSHL 660
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* Length = 724 | Back alignment and structure |
|---|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* Length = 647 | Back alignment and structure |
|---|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Length = 1232 | Back alignment and structure |
|---|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* Length = 1232 | Back alignment and structure |
|---|
| >3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B* Length = 1166 | Back alignment and structure |
|---|
| >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* Length = 1180 | Back alignment and structure |
|---|
| >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* Length = 1180 | Back alignment and structure |
|---|
| >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* Length = 1180 | Back alignment and structure |
|---|
| >3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum} Length = 174 | Back alignment and structure |
|---|
| >3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum} Length = 174 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C* Length = 1122 | Back alignment and structure |
|---|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} Length = 459 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* Length = 574 | Back alignment and structure |
|---|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} Length = 446 | Back alignment and structure |
|---|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* Length = 608 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1148 | |||
| 3u4q_B | 1166 | ATP-dependent helicase/deoxyribonuclease subunit; | 100.0 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 100.0 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 100.0 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 100.0 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 100.0 | |
| 1w36_B | 1180 | RECB, exodeoxyribonuclease V beta chain; recombina | 100.0 | |
| 1w36_C | 1122 | RECC, exodeoxyribonuclease V gamma chain; recombin | 100.0 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 99.94 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 99.92 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 99.92 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 99.91 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 99.89 | |
| 3dmn_A | 174 | Putative DNA helicase; APC89291.2, lactobacillus p | 99.84 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 99.69 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 99.48 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 98.71 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 94.54 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 94.37 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 94.06 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 93.86 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 93.61 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 93.52 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 93.34 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 93.12 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 93.07 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 92.97 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 92.78 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 92.69 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 92.67 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 92.45 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 92.31 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 92.21 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 92.13 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 92.07 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 91.69 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 91.53 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 91.41 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 90.8 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 90.69 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 90.63 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 90.57 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 90.56 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 90.26 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 89.98 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 89.76 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 89.7 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 89.69 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 89.56 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 89.4 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 89.2 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 89.11 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 88.5 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 88.5 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 88.49 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 88.4 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 87.39 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 87.33 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 86.69 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 86.66 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 85.09 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 85.07 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 84.45 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 84.37 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 84.1 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 83.98 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 81.99 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 80.42 | |
| 3h4r_A | 265 | Exodeoxyribonuclease 8; exonuclease, recombination | 80.21 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 80.16 |
| >3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-77 Score=788.92 Aligned_cols=732 Identities=13% Similarity=0.124 Sum_probs=568.7
Q ss_pred EEEEecCCCCC--------------CCCCCCEEEEeccHHHHHHHHHHHHhhhccccCCCceEechHHHHHHHHHHHHHH
Q 001127 264 LLIVAGPGSGK--------------GISPSNILAMTFTTAAASEMRDRIGSIVGKATAKELTISTFHSFSLQLCRSHAEK 329 (1148)
Q Consensus 264 ~lI~G~AGSGK--------------~~~~~~ILvltft~~Aa~ei~~RL~~~l~~~~~~~v~V~Tfhs~a~rIl~~~~~~ 329 (1148)
-+|+|+||||| +..|.+||+++ ||+++++|++||...++..+..+++|+|||+||+++++++|
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lV-P~q~TFt~~~rl~~~l~~~~~~~~~V~TFhsla~~il~~~g-- 80 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLV-PDQMTFLMEYELAKTPDMGGMIRAQVFSFSRLAWRVLQHTG-- 80 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEEC-CGGGHHHHHHHHTCCSSCSEESSEEEECHHHHHHHHHHHHS--
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEe-cCcccHHHHHHHHHhhhhcceeeeEEecHHHHHHHHHHHcC--
Confidence 47999999999 44567888874 46677779999999888766788999999999999999986
Q ss_pred hcCCCCceecChHHHHHHHHHHHHHHHhhhHHHHhhhhccccccccchhhhHHHHHHHHHHhhhhhhhhHHhhhHHHHHh
Q 001127 330 LERTSEFLIYGHGQQRRAIIEAVRLLENEKILVVKRISTDMLTTDGHFGYMRASLFMMNAMLFFSMSSFKLCQYNKFERD 409 (1148)
Q Consensus 330 ~~~~~~~~i~~~~~~~~~l~~il~~~~~~~~~~~~~~~~d~l~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l~~ 409 (1148)
...+.++++.++.+++++++..+..++ ..|..... ..+|.+.+.+
T Consensus 81 ---~~~~~ild~~~~~~ll~~il~~~~~~l---------------~~f~~~~~-----------------~~~f~~~l~~ 125 (1166)
T 3u4q_B 81 ---GMSRPFLTSTGVQMLLRKLIEEHKQEF---------------KVYQKASD-----------------KSGFTAQVER 125 (1166)
T ss_dssp ---CTTSCEECHHHHHHHHHHHHHHGGGGC---------------SSTTTTSS-----------------STHHHHHHHH
T ss_pred ---CCcccCcCHHHHHHHHHHHHHHhHHHH---------------HHHhhccC-----------------ChHHHHHHHH
Confidence 244689999999999999887665443 33332221 4567888888
Q ss_pred hHHHHHHcCCCHHHHHhhH-----------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhcccHHHHHHh
Q 001127 410 GMDVAKASGKTPAEFRKIG-----------------DEIGAAILENYNGILRSCNALDYHDLISCSVKLLSTFPEVFQEY 472 (1148)
Q Consensus 410 ~i~~~k~~~~~~e~l~~~~-----------------~~~~~~iy~~Y~~~L~~~~~iD~~Dll~~a~~lL~~~~~l~~~l 472 (1148)
.++++|+++++|+++.... ......+|+.|++.++ .+++||+|++..+.++|.+++.+.
T Consensus 126 ~is~~k~~~i~~~~l~~~~~~~~~~~~~~~~~~~~k~~~l~~iy~~y~~~l~-~~~~Df~Dll~~~~~~l~~~~~l~--- 201 (1166)
T 3u4q_B 126 MLTEFKRYCLEPEDIRRMAESGTASEYRGERVLSEKLHDLSILYQQMEKSLA-DQYLHSEDYLTLLAEHIPLAEDIK--- 201 (1166)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSTTSCCTTHHHHHHHHHHHHHHHHHHHHHST-TTCEEGGGHHHHHHHHSTTCGGGT---
T ss_pred HHHHHHHcCCCHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHhccccccC---
Confidence 9999999999999886542 1234689999999998 799999999999999999877653
Q ss_pred ccCcCEEEEecCccCCHHHHHHHHHHHc-CCcEE--EEcC--------CCCcccccCCCChHHHHHHHHh--cCCceEEE
Q 001127 473 QDSWKAIIVDEFQDTSAMQYSLLQILAS-HNRIT--IVGD--------DDQSIFSFNGADISGFDSFRKD--FLNYKEIR 539 (1148)
Q Consensus 473 ~~~fd~IiIDEfQDftp~q~~lL~~L~~-~~~l~--lvGD--------~~QsIy~frga~~~lf~~l~~~--~~~~~~~~ 539 (1148)
.++|+|||||||||.|+.+|..|+. +.+++ +||| ++|+||+|+|+++..+..+.+. ++....+.
T Consensus 202 ---~~~IlVDEfQD~~~~Q~~ll~~L~~~~~~~~v~lvGD~~~~~~~~~~QsIY~~rga~~~~l~~~~~~~~~~~~~~~~ 278 (1166)
T 3u4q_B 202 ---GAHIYVDGFYQFTPQEFRVLEQLMVHAEHITFSLTADKPSYEREPHELELFRMTGKTYYRLHQKAKELNLDITYKEL 278 (1166)
T ss_dssp ---TCEEEECSCSCCCHHHHHHHHHHHHHCSEEEEEEECSSCCSSSCCCTTCTTHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ---CCEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEEeCcccccCCCCCCCcchhHHHHHHHHHHHHHHcCCCccccee
Confidence 2699999999999999999999987 44555 6699 8999999999999999999988 66567889
Q ss_pred eccCCCChhHHHHHHHhhhhhhhhhcccccccccCCCCceeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCcEEEE
Q 001127 540 LTRNYRSTRCIVEAASSLIQHNVKRCQLKNVQTDNSHGSKIIIKECHNEDAQCAFIIDKILEHASNGPASICSYGSIAIL 619 (1148)
Q Consensus 540 L~~nyRs~~~I~~~an~ll~~~~~~~~~~~~~~~~~~g~~i~l~~~~~~~~E~~~Va~~I~~Lv~~~~~~g~~~~DIAVL 619 (1148)
|+.|||++++|+.+.+..+.. .... .+ ...+..+.++.+.+..+|+++|++.|++++.+ +|++|+|||||
T Consensus 279 L~~nyRs~~~il~~i~~~~~~----~~~~-~~--~~~~~~i~i~~~~~~~~Ea~~ia~~I~~l~~~---~g~~~~diAVL 348 (1166)
T 3u4q_B 279 SGTERHTKTPELAHLEAQYEA----RPAI-PY--AEKQEALTVMQAANRRAELEGIAREIHALVRE---KGYRYKDVAIL 348 (1166)
T ss_dssp CSCSTTTTCHHHHHHHHSSSC----SSCC-CC--CSCCSSEEEEEESSHHHHHHHHHHHHHHHHHT---SCCCGGGEEEE
T ss_pred cCCCCCCCCHHHHHHHHhHhh----cCCC-cc--CCCCCCeEEEEcCChHHHHHHHHHHHHHHHHh---cCCChhheEEE
Confidence 999999999998765543322 1111 11 13456699999999999999999999999984 59999999999
Q ss_pred EecC-cChHHHHHHHHHCCCCeEEc-CccccccHHHHHHHHHHHHhCCCCCCchHHHHHHH-hh-hhh--HHHHHHHHHH
Q 001127 620 YRRQ-VSGKVFQTAFRERKIPFNIH-GVAFYRKKVVRAIIAMLRTTLPGCDDGPYRRVFKA-FL-LLE--KEEKKRVIDH 693 (1148)
Q Consensus 620 ~r~~-~~~~~l~~~L~~~gIP~~i~-~~~l~~~p~v~~i~slL~~~~~~~d~~~~~~llk~-L~-~~~--~~~~~~~id~ 693 (1148)
+|++ .+...+..+|.++||||+++ +.+++++|+|+.++++|+++.++++..++.+++++ +. +.. .......++.
T Consensus 349 ~R~~~~~~~~i~~~L~~~gIP~~~~~~~~~~~~~~v~~lla~L~~~~~~~d~~~l~rlL~~p~~~gi~~~~~~~~~~l~~ 428 (1166)
T 3u4q_B 349 ARQPEDYKDMVKEVFADYEIPYFIDGKASMLNHPLIEFIRSSLDVLKGNWRYEAVFRCVKTELLFPLNEPKAKVREQVDQ 428 (1166)
T ss_dssp ESCGGGTHHHHHHHHHHTTCCEEESSCCBSTTSHHHHHHHHHHHHHHTTCCHHHHHHHHTTTSSSCSSSCHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHHcCCCEEECCCcchhcCHHHHHHHHHHHHHHcCCCHHHHHHHHcCCCcCCccccccccHHHHHH
Confidence 9996 59999999999999999998 68999999999999999999999999999999998 33 333 2223566899
Q ss_pred HHHHHhhhccchHHHHh--hhhhccccch--------hh---h-h-hhHhhHHHHHHHHHHHHHHhhCCCHHHHHHHHHh
Q 001127 694 IDKISTIRKCSFISAAC--DIFGAKISGT--------FK---R-S-QLTQGRKVLLTLEMISKLVRREPSISAVITSVAN 758 (1148)
Q Consensus 694 Leny~~~~gi~~~~~~~--~~~~~~~~~~--------~~---~-~-~~~~~r~~~~~l~~l~~~~~~~~~~~~~~~~l~~ 758 (1148)
|++|+...|+++. .|. ..|....... .. . . .......+...+..+.+.+....+..+++..++.
T Consensus 429 Le~~~~~~gi~g~-~w~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~f~~~l~~~~~~~~~~~~l~~ 507 (1166)
T 3u4q_B 429 LENYCIAYGIKGD-RWTKGDRFQYRRFVSLDDDFAQTDQEIEMENMLNDTRDWIVPPLFQLQKRMKKAKTVQEKAEALYR 507 (1166)
T ss_dssp HHHHHHHHTCCTH-HHHC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBHHHHHHHHHH
T ss_pred HHHHHHHhCCChh-hcCCCCCceeecccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH
Confidence 9999999999975 333 2332111000 00 0 0 1112345666777777777777778888888777
Q ss_pred hcHHH----HHHHHhhhc-ccccccccccchhHHHHHHHHHHHHHHHHHhhhhhhhccCCcccccccccchHHHHHHHHH
Q 001127 759 MVPQK----YLLEQRAVV-DFDGGKLLNEDNDLRSVLQYLLADVTDFLSTKFTAAKEEGNVDQDKKGCINVLKAFIDYIS 833 (1148)
Q Consensus 759 ~~~~~----~l~~~~~~~-~~~~~~~~~e~~q~~~vl~~lld~l~e~l~~~~~~~~~~~~~~~~~~~~~~~L~~f~~~L~ 833 (1148)
++..- .+..|.... ..+....+.++.|+|+.+..+++++.++.+.. ..++.+|+++|.
T Consensus 508 ~l~~~~~~~~l~~~~~~~~~~g~~~~~~~~~q~~~~l~~ll~~~~~~~~~~-----------------~~~l~~f~~~l~ 570 (1166)
T 3u4q_B 508 YLEETDVPLKLDQERQRAEDDGRIIEAQQHQQAWDAVIQLLEEFVEMMGDD-----------------EISLDLFQQMIE 570 (1166)
T ss_dssp HHHHTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHSTTS-----------------BCCHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------ccCHHHHHHHHH
Confidence 74321 122232222 22223345677899999999999998876543 578999999999
Q ss_pred hhhhhhhcccCCCCCCcEEEEccccccCCCCCEEEEeecCCCCCccccccCCccCcc----------------cccHHHH
Q 001127 834 ERETEHFRTQRHDNENSVTLTTIHQSKGLEWDIVFVAKANETEIPLVHEFNGAVNEK----------------GTSVEEE 897 (1148)
Q Consensus 834 ~~~~~~~~~~ip~~~D~V~V~Tih~sKGlE~~~VfV~Glneg~~P~~~~~~g~l~d~----------------e~~l~EE 897 (1148)
.++.....+.+|+..|+|+|+|+|.+||++||+|||+|+|+|+||.....++++++. .+.+++|
T Consensus 571 ~~l~~~~~~~~~~~~d~V~i~t~~~argl~f~~V~l~G~~eg~~P~~~~~~~~l~~~~R~~l~~~g~~l~~~~~~~~~ee 650 (1166)
T 3u4q_B 571 AGAESLTFSLIPPALDQVFVGNMDLSRMYGTSCTFVLGANDGVLPARPDENGVLSDDDREWLKTIGVELSSGGRERLLDE 650 (1166)
T ss_dssp HHHHHCBCCCCCCBSSCEEEEESSSCCCSSCSEEEEECCBTTTTTTCCCCCSSSCHHHHHHHHHHTCCCCCCSSHHHHHH
T ss_pred HHHHhCCcCCCCCCCCEEEEecCcccccCCCCEEEEeCCCcCCCCCCCCCCCCCCHHHHHHHHhCCCcCCCchHHHHHHh
Confidence 988877777888999999999999999999999999999999999998888876543 2467899
Q ss_pred HHHHHHHHhcccceEEEEEEeecccccccCCchhHHhhhhhhHHHHhhhhcccc-----------CCCchhhhhH-----
Q 001127 898 RRLLYVAMTRARKKLFILYVMMDANWQLLQPSRFLKEIPHHLREVQAEQSVQDQ-----------HENIPEGTAQ----- 961 (1148)
Q Consensus 898 rrL~YVAlTRAk~~L~LSy~~~d~~g~~~~PS~fl~~l~~~f~~~~~~~~~~~~-----------~~~~~~~~~~----- 961 (1148)
+|+||||||||+++|||||+..+.+|++..||+||.+|...||.+........+ ...+..++..
T Consensus 651 r~l~y~altrA~~~L~lsy~~~~~~~~~~~pS~~l~el~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 730 (1166)
T 3u4q_B 651 HFLIYMAFSSPSDRLYVSYPIADAEGKTLLPSMIVKRLEELFPHHKERLLTNEPEQVSDEEQLMYVVNKSVAQSFTASQL 730 (1166)
T ss_dssp HHHHHHHHTSCSSEEEEEEESSCSSSCCCCBCHHHHHHHHHSTTCCCEEECSCGGGSCHHHHTTSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCeEEEEEeccCCCCCccCCCHHHHHHHHHccccceeccccCcccccchhhhhhhCCHHHHHHHHHHHH
Confidence 999999999999999999999988899999999999999998754321110000 0111111111
Q ss_pred -------------------------------hhhcCCCccCCCcCCCcccccccccCcccChhhhhHHhhChhhhHHHhh
Q 001127 962 -------------------------------FTINLPREENCCETDLVSTDFLNVQLSGAATESMELLEACNGNSFLRRF 1010 (1148)
Q Consensus 962 -------------------------------L~~~~~~~~p~~~~~~~~~~~L~~~~~~~SvSrlE~~~~CPf~~Fl~~~ 1010 (1148)
+..++...++...+++...+.|||+++++|||+||+|.+|||+||+ +|
T Consensus 731 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lyg~~~~~S~S~le~~~~CP~~~f~-~y 809 (1166)
T 3u4q_B 731 RLWTREYDISDVWWSTYNVLMSEQDRLQSKKLFSSLFFRNEVKQLERSVSRQLYGERIQGSVSRMETFNACPFSHFA-SH 809 (1166)
T ss_dssp HHHHTTCCCCTHHHHHHHHHTSSTTHHHHHHHHTTTTCCCCCCCCCHHHHHHHTCSSBCCBHHHHHHHHHCHHHHHH-HT
T ss_pred HHhhhcCcccHHHHHHHHHHHhCchhHHHHHHHHhhcccCCCCCCCHHHHHHHhCCCcCCCHHHHHHHHhChHHHHH-Hh
Confidence 1222333334445666677889999999999999999999999999 88
Q ss_pred cCcc---------cchhhhHHHHHHHHhhcC-----------CHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHH
Q 001127 1011 SVED---------RSIISHLFHQWAKKKAFQ-----------EPKRLLNKVDFVIDE-------RLRVKKNKHKDVLRAL 1063 (1148)
Q Consensus 1011 Gl~~---------a~~iGtl~H~~le~~~~~-----------~~~~~~~~~~~~v~e-------~~~~s~~r~~~~~~~l 1063 (1148)
|+++ ++++||+||++++.+... +.+++.+++++++++ .+..+++|++|+..++
T Consensus 810 ~L~l~~~~~~~~~~~~~G~~~H~~Le~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 889 (1166)
T 3u4q_B 810 GLHLKERQFFKLEAPDIGQLFHSSLKLISDRLRDEKLDWRDLTKEQCELFSYDAVERLAPKLQKEILLSSNRHYYVKEKL 889 (1166)
T ss_dssp TSCCCCCCCSSCCSHHHHHHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHGGGSTTTHHHHSHHHHHHHHHH
T ss_pred ccCCCCccccCCCcchhhHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHH
Confidence 8833 678999999999998842 778899999999988 1447899999999999
Q ss_pred HHHhcc
Q 001127 1064 KSCLSS 1069 (1148)
Q Consensus 1064 ~~~l~~ 1069 (1148)
++++..
T Consensus 890 ~~~~~~ 895 (1166)
T 3u4q_B 890 QKIVTR 895 (1166)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988874
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
| >1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B* | Back alignment and structure |
|---|
| >1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.25 PDB: 3k70_C* | Back alignment and structure |
|---|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
| >3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum} | Back alignment and structure |
|---|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3h4r_A Exodeoxyribonuclease 8; exonuclease, recombination, hydrolase; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1148 | ||||
| g1qhh.1 | 623 | c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bac | 6e-95 | |
| d1pjra1 | 318 | c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillu | 5e-45 | |
| d1uaaa1 | 306 | c.37.1.19 (A:2-307) DEXX box DNA helicase {Escheri | 7e-38 | |
| d1uaaa2 | 333 | c.37.1.19 (A:308-640) DEXX box DNA helicase {Esche | 6e-33 | |
| d1pjra2 | 333 | c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacil | 7e-32 | |
| d1w36b1 | 485 | c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta ch | 2e-29 | |
| d1w36b1 | 485 | c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta ch | 4e-11 | |
| d1w36c2 | 470 | c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma | 5e-25 | |
| d1w36b2 | 395 | c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta | 2e-20 | |
| d1w36d2 | 246 | c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha | 1e-04 |
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Length = 318 | Back information, alignment and structure |
|---|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Length = 306 | Back information, alignment and structure |
|---|
| >d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
| >d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} Length = 333 | Back information, alignment and structure |
|---|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 485 | Back information, alignment and structure |
|---|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 485 | Back information, alignment and structure |
|---|
| >d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 470 | Back information, alignment and structure |
|---|
| >d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 395 | Back information, alignment and structure |
|---|
| >d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} Length = 246 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1148 | |||
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 100.0 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 100.0 | |
| d1w36c2 | 470 | Exodeoxyribonuclease V gamma chain (RecC), N-termi | 100.0 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 99.97 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 99.97 | |
| d1uaaa2 | 333 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 99.96 | |
| d1pjra2 | 333 | DEXX box DNA helicase {Bacillus stearothermophilus | 99.96 | |
| d1w36b2 | 395 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 99.91 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 98.68 | |
| d1w36d2 | 246 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.55 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 93.61 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 93.0 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 92.81 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 92.58 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 91.76 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 90.73 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 88.98 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 88.72 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 88.39 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 88.2 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 88.2 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 88.16 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 88.06 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 87.18 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 85.24 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 84.61 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.46 |
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1w36c2 c.37.1.19 (C:348-817) Exodeoxyribonuclease V gamma chain (RecC), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1uaaa2 c.37.1.19 (A:308-640) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pjra2 c.37.1.19 (A:319-651) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1w36b2 c.37.1.19 (B:486-880) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1w36d2 c.37.1.19 (D:361-606) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|