Citrus Sinensis ID: 001133

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140-----

MSDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDFRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG

ccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccEEccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEcccEEEEEccHHHHHHHHHHHHHHHHcccccEEEcccccEEEEccHHHHHHHHHHHHHHHHcccEEEEcccccccccccHHHHccccEEEEEEEEcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHcc

cccccccEEEccHHHHHHHHHHHHHEcccccccccccccccccccccccEEEEEEEccccEEEEEEccccEEEEEccHHHHHHHHHHHHHHHHHHcccHHcccccccccccccHHHcHHcccccccccccccHHHHHHcccHHHccccccEEHHHHccccccHHHHcccccEEEccccccccccccccHcccccccccccEEEEEEcccccccccccccccccHHHHHHcccccEHHHHHEEccccccccHHHHHHHccccEEccccccccccccccccccccccccEEccccEEEEccccccccccccccccccHHcccccccccccccccccHHHHHcccHHHHHEcccccEEEEcccccccccccccHcccccccccccccEccccccccccccccccccccEccccccccccccccccccccEEEcccccccccccEcccccccccccEEEccccccccccccccccccccccccccccccccEccccccccccccccccccccccEEcccccccccccccccccHccccccccccHHcccccccccccccccccccccccccccccEEccccccccEEcccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEEEccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccHcccccccccHHHcHHHHcccccHHHHHcccccccHHHHHHHccccHHHHHHHHccccccHHHHHHcEEEEEEcccEEEEEEcccEEEEEccccHHHHHHHHHHHHHHHcccccccEccccEEEEccHHHHHHHHHHHHHHHHHccccEEcccccccEEEEEEcccccccEEEEEEccHHccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcHEEccccccHHHHHHHHHHHHHccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcc

msdinsryvckgPIHKLLNHLAasfdcsdswkanngflkgkrsksqacpayllnlrcphslydltfdplkthvvfkdwEPVLAFIERAIRSAWMKKIahdsfdvdmledaelplessrfqshqssthlhssplknlAKQRDHMFHKECERItfqefqkdpvelaeentemeffsqpkhssslldgsfaeclpivppkidhrvwtiesswfqdhqpsrhlfspplenlkkEGDHLFRKECeritfgdaekdpaelqeentemeyvpqpkysfglsdgsfakclpivpwkidrhawtiessrfqyhqssphlyssplenlskegdHLFREECEritfgefekhtpelkeenskrelvsqpkyssklldcpfaeclspvlrkidlhgwtsgnrfslkgsyfletcfladgrssipvegdllnsqrgyeylqiepgvsngasgtaspldkdefsnefevskdikkplrlscfsqgspplggplfsggeercesstgcfkykrkrkRVCYDKRMDILeadfsnqsfdsfsrtplqdeascsqhlprlstagditagFDLMSRAslnlfpshaepftketnflsdsiepvgnsvsdykalnsvwcskisdpfpqgaswndghfiynnaleghsilgegtscgqladteenykfdydsklrrsnqekcttarsglrfeyydnsSEDFCKYLqehdpcnkfsrehsdvpfdktdWLCSVLSSieydnpetqrykfrnhncepnpihkelsrrshsappfhrhkrryislnccsveagksnahtlhcaknspeagafkhlqqssgvcnanvkpsseeedfrpdfkiesstildleethkaenfklslcphahlgaqaegtsiisgtkwrnghpqttnnniscdihnqdnilDISSGllhltgeffipdsinksCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLsgegksvayldaeqelvLPEIGYQLLQNFAEQIKDwgwicnihtqgsrsfnkNLNLLQRQITVITLLAvpcifgvnlsdVDLLEFLQQLadtdgssttppsvLRVLNSkacrgaimfgdsllpSECALIVEELKQTSlcfqcahgrpttvpLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG

msdinsryVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQshqssthlhssplkNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERitfgdaekdpaELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITfgefekhtpelkeenskrelvsqpkYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGgplfsggeercesstgcfkykrkrkrVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFdydsklrrsnqekcttarsglrfeyYDNSSEDFCKYLQEHDPCNKFSrehsdvpfdKTDWLCSVLSSIEYDNPETQRYKFRNHNCEpnpihkelsrrshsappfhrhkrRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKpsseeedfrpdfKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLAdtdgssttppsVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHrgeislkrasrrlltgvrg

MSDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFqshqssthlhssPLKNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCfsqgspplggplfsggEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDFRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG

******RYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDML****************************************CERITF*****************************LDGSFAECLPIVPPKIDHRVWTIESSWFQD**********************F***C**I*************************KYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQY**********************FREECERITF***************************KLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQI*************************************************************TGCFKYKRKRKRVCYDKRMDILEADF*****************************GDITAGFDLMSRASLNLFP**********NFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDY*************TARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDN************************************RRYISLNCCSVEAGK****TL**********************************************L*L****KAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLAD*********SVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEI***************

MSDINSRYVCKGPIHKLLNHLAAS*************************AYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI*****************************************QRDHMFHKE*****************************************************************************************KECERI*******************EYVPQPK*******GSFAKCLPIVPWKIDRHAWT********************************EECERITFGEFEKHT****************KYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDL********************SGTASPLDKDEFSN***************************************************************************************************************************************************************************************************************************************************************************************************************************************AKNSPEAGAFKHLQQSSGVCNAN*******************************************************************************************************CLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHK***********LDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDG**TTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSEL*****************LLTG***

MSDINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPL******************LKNLAKQRDHMFHKECERITFQEFQKDPVELAEENT*************LLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHT****************KYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGGPLFS*********TGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWLCSVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKSNAHTLHCAKNSPEAGAFKHLQQ*****************FRPDFKIESSTILDLEETHKAENFKLSLCPHAHLGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVRG

***INSRYVCKGPIHKLLNHLAASFDCSDSW**************QACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDHMFHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSPPLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLP**STAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALEGHSILGEGTSCGQLADTEENYKFDYDSKLRR*NQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDP*************************************************************************************TLHCAKN*PEAGAFKHLQQSSGVCNANV****E*EDFRPDFKIESSTILDLEETHKA*********************************************NQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTGVR*

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1145	2.2.26 [Sep-21-2011]
Q9UHC1		1453	DNA mismatch repair prote	yes	no	0.213	0.168	0.292	5e-18
Q12083		715	DNA mismatch repair prote	yes	no	0.176	0.282	0.316	2e-17
P54280		794	DNA mismatch repair prote	yes	no	0.191	0.275	0.315	2e-15
P54278		862	Mismatch repair endonucle	no	no	0.166	0.221	0.258	2e-10
P54279		859	Mismatch repair endonucle	no	no	0.168	0.224	0.260	6e-10
B2TIB8		672	DNA mismatch repair prote	yes	no	0.145	0.248	0.284	1e-09
Q54QA0		1022	Mismatch repair endonucle	no	no	0.152	0.171	0.294	6e-09
Q5GSP0		628	DNA mismatch repair prote	yes	no	0.148	0.270	0.238	1e-08
B9JA11		606	DNA mismatch repair prote	yes	no	0.146	0.277	0.274	5e-08
Q895H3		620	DNA mismatch repair prote	yes	no	0.154	0.285	0.265	1e-07

>sp\|Q9UHC1\|MLH3_HUMAN DNA mismatch repair protein Mlh3 OS=Homo sapiens GN=MLH3 PE=1 SV=3	Back alignment and function desciption

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 130/294 (44%), Gaps = 49/294 (16%)

Query: 882  LDISSG----LLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVV----------AGGT 927
            +D+SSG    L         P    K  +   +VLQQVD KFI  +          AGG 
Sbjct: 1158 VDVSSGQAESLAVKIHNILYPYRFTKGMIHSMQVLQQVDNKFIACLMSTKTEENGEAGGN 1217

Query: 928  LAV-IDQHAADERIRLEEL-----RHKVLSGEGKS---VAYLDAEQELVLPEIGYQLLQN 978
            L V +DQHAA ERIRLE+L       +   G G+     + L    E+ + E   +LL  
Sbjct: 1218 LLVLVDQHAAHERIRLEQLIIDSYEKQQAQGSGRKKLLSSTLIPPLEITVTEEQRRLLWC 1277

Query: 979  FAEQIKDWGWICNIHTQGSRSF-----------NKNLNLLQRQITVITLLAVPCIFGVNL 1027
            + + ++D G +  +    S S             +  N L+R  + +T   V        
Sbjct: 1278 YHKNLEDLG-LEFVFPDTSDSLVLVGKVPLCFVEREANELRRGRSTVTKSIVEEFIR--- 1333

Query: 1028 SDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTS 1087
               + LE LQ      G  T P +V +VL S+AC GAI F D L   E   ++E L    
Sbjct: 1334 ---EQLELLQTTGGIQG--TLPLTVQKVLASQACHGAIKFNDGLSLQESCRLIEALSSCQ 1388

Query: 1088 LCFQCAHGRPTTVPLVNLEALHKQ------IAQLNNSSELWHGLHRGEISLKRA 1135
            L FQCAHGRP+ +PL +++ L ++      + +L   ++ W    + E   +++
Sbjct: 1389 LPFQCAHGRPSMLPLADIDHLEQEKQIKPNLTKLRKMAQAWRLFGKAECDTRQS 1442

Probably involved in the repair of mismatches in DNA.
Homo sapiens (taxid: 9606)

>sp\|Q12083\|MLH3_YEAST DNA mismatch repair protein MLH3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MLH3 PE=1 SV=1	Back alignment and function description

>sp\|P54280\|PMS1_SCHPO DNA mismatch repair protein pms1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pms1 PE=3 SV=1	Back alignment and function description

>sp\|P54278\|PMS2_HUMAN Mismatch repair endonuclease PMS2 OS=Homo sapiens GN=PMS2 PE=1 SV=2	Back alignment and function description

>sp\|P54279\|PMS2_MOUSE Mismatch repair endonuclease PMS2 OS=Mus musculus GN=Pms2 PE=1 SV=1	Back alignment and function description

>sp\|B2TIB8\|MUTL_CLOBB DNA mismatch repair protein MutL OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|Q54QA0\|PMS1_DICDI Mismatch repair endonuclease pms1 OS=Dictyostelium discoideum GN=pms1 PE=3 SV=1	Back alignment and function description

>sp\|Q5GSP0\|MUTL_WOLTR DNA mismatch repair protein MutL OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|B9JA11\|MUTL_AGRRK DNA mismatch repair protein MutL OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=mutL PE=3 SV=1	Back alignment and function description

>sp\|Q895H3\|MUTL_CLOTE DNA mismatch repair protein MutL OS=Clostridium tetani (strain Massachusetts / E88) GN=mutL PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1145
296088648		1230	unnamed protein product [Vitis vinifera]	0.703	0.654	0.457	1e-172
359477080		1218	PREDICTED: uncharacterized protein LOC10	0.703	0.660	0.452	1e-170
255561427		1137	conserved hypothetical protein [Ricinus	0.626	0.630	0.453	1e-150
356495309		1208	PREDICTED: uncharacterized protein LOC10	0.648	0.615	0.409	1e-139
357484163		1293	MutL DNA mismatch repair protein [Medica	0.681	0.603	0.395	1e-133
334187192		1169	DNA mismatch repair protein MLH3 [Arabid	0.448	0.438	0.461	1e-119
449456955		1238	PREDICTED: uncharacterized protein LOC10	0.427	0.394	0.464	1e-114
297802396		1119	hypothetical protein ARALYDRAFT_328199 [	0.532	0.545	0.414	1e-114
3367570		1151	putative protein [Arabidopsis thaliana]	0.444	0.442	0.456	1e-112
222642049		1166	hypothetical protein OsJ_30259 [Oryza sa	0.344	0.337	0.451	6e-92

>gi\|296088648\|emb\|CBI37639.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 396/866 (45%), Positives = 501/866 (57%), Gaps = 61/866 (7%)

Query: 312  SSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAE 371
            SSP+E L++E DH    +  +I F +    T E + + +K   V Q   S + LD   ++
Sbjct: 383  SSPMELLTEENDHFSCRKENKIPFQKLRNDTSEFEGQRNKIGFVHQIDSSFQSLDDSPSK 442

Query: 372  CLSPVLRKIDLHGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGYEYLQIEP 431
            C+S V    + H     + F +  + FLE  F     S   VE  +L S  G E L ++ 
Sbjct: 443  CISGVHPHTE-HLELPDDNFFITKNNFLENKFTVLESSFDHVEDKILGSTWGNESLNVDH 501

Query: 432  GVSNGASGTASPLDKDEFSNEFE-VSKDIKKPLRLSCFSQGSPPLGGPLFSGGEERCESS 490
             + NG S  A   +  EF N  E  SKD KKP+  SC       LG  L S      ES 
Sbjct: 502  DMGNGFS--ALSYNSYEFRNGVEEASKDFKKPILQSC------SLGRSLLSD----WESD 549

Query: 491  TGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDEASCSQHLPRLSTAGDITA 550
               F+    R R    +++D       N+SFD F  T  Q+EAS      RL T  ++  
Sbjct: 550  KFEFQIDGLRTR---QRQID------HNKSFDFFPGTAWQEEASSDWPSSRLKTKPEMCT 600

Query: 551  GFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGA 610
            G D MSR SL    ++ E F  E N   DS+E  G   S + +LNS  CS +S    Q  
Sbjct: 601  GLDFMSRDSLKSLSTYRERFAVENNLPPDSVEQSGKFGSGHLSLNSECCSMVSQSLFQTT 660

Query: 611  SWNDGHFIYNNALEGHSILGEGTSCGQLADTEEN-YKFDYD---SKLRRSNQEKCTTARS 666
             W+  HF + N  +G        S     D+E   + F +D   S   + N    +   +
Sbjct: 661  PWDVEHFTHENTPQGGLGSDRNVSYEHFIDSESGGWIFSHDIMPSSSSQENCSSSSCINT 720

Query: 667  GLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFDKTDWL-----------------C 709
            GL  + Y   S D  + L+E++  N F+  HSD+   +TDWL                 C
Sbjct: 721  GLGLKDYTVPSRDIYRLLKENNLDNIFTPRHSDILSIETDWLYSKSCGKDNNNNRAVPSC 780

Query: 710  SVLSSIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLN-CCSVEA 768
            S+  S      E ++ + R  NC      KE SR SHSAPP +R KR++++LN   ++E+
Sbjct: 781  SIPLSTNIHKDENKKERLRYQNCGQIHASKERSR-SHSAPPIYRGKRKFLALNDHWTMES 839

Query: 769  GKSNAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPSSEEEDF---RPDFKIESSTILDL 825
             K +    H A   PE    KH  QSSG CN   KPS  E+     R D K       D+
Sbjct: 840  KKVDVIDSHDAPTFPETDELKHPLQSSGACNQYFKPSFLEDPLFYGRSDMKKMLENEPDM 899

Query: 826  EETHKAENFKLSLCPHAHLGAQA-------EGTSII-SGTKWRNGHPQTTNNNISCDIHN 877
            ++    + F+ S C      + +       E T ++ S +KWRN  P+  + + S   ++
Sbjct: 900  DKIQNIDIFRKSQCLPIDDDSYSFKDFTTKEATDLMNSESKWRNNCPKIASGDKSQKFND 959

Query: 878  QDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAAD 937
            Q N+LDISSG+LHL G+  IP SI K+CL+DAKVLQQVDKKFIPVVA GTLA+IDQHAAD
Sbjct: 960  QYNVLDISSGILHLAGDSLIPQSITKNCLQDAKVLQQVDKKFIPVVADGTLAIIDQHAAD 1019

Query: 938  ERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGS 997
            ERIRLEELR KVLSGE K++ YLDAEQELVLPEIGYQLL  +AEQI++WGWICNIH Q S
Sbjct: 1020 ERIRLEELRQKVLSGEVKTITYLDAEQELVLPEIGYQLLHTYAEQIQNWGWICNIHAQNS 1079

Query: 998  RSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLN 1057
            RSF KNL+LL ++ TVITLLAVPCI GVNLSDVDLLEFLQQLADTDGSST PPSVLRVLN
Sbjct: 1080 RSFTKNLDLLHKKPTVITLLAVPCILGVNLSDVDLLEFLQQLADTDGSSTMPPSVLRVLN 1139

Query: 1058 SKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNN 1117
             KACRGAIMFGD+LLPSEC+LIVEELK+TSLCFQCAHGRPTTVPLVNLEALHKQIA+L +
Sbjct: 1140 LKACRGAIMFGDALLPSECSLIVEELKRTSLCFQCAHGRPTTVPLVNLEALHKQIAKLGS 1199

Query: 1118 ----SSELWHGLHRGEISLKRASRRL 1139
                S ELWHGL R E+SL+RA+ RL
Sbjct: 1200 GGGGSIELWHGLRRHELSLERAAHRL 1225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359477080\|ref\|XP_002272829.2\| PREDICTED: uncharacterized protein LOC100253902 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|255561427\|ref\|XP_002521724.1\| conserved hypothetical protein [Ricinus communis] gi\|223539115\|gb\|EEF40711.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|356495309\|ref\|XP_003516521.1\| PREDICTED: uncharacterized protein LOC100788019 [Glycine max]	Back alignment and taxonomy information

>gi\|357484163\|ref\|XP_003612368.1\| MutL DNA mismatch repair protein [Medicago truncatula] gi\|355513703\|gb\|AES95326.1\| MutL DNA mismatch repair protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|334187192\|ref\|NP_195277.5\| DNA mismatch repair protein MLH3 [Arabidopsis thaliana] gi\|332661126\|gb\|AEE86526.1\| DNA mismatch repair protein MLH3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449456955\|ref\|XP_004146214.1\| PREDICTED: uncharacterized protein LOC101213777 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297802396\|ref\|XP_002869082.1\| hypothetical protein ARALYDRAFT_328199 [Arabidopsis lyrata subsp. lyrata] gi\|297314918\|gb\|EFH45341.1\| hypothetical protein ARALYDRAFT_328199 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|3367570\|emb\|CAA20022.1\| putative protein [Arabidopsis thaliana] gi\|7270503\|emb\|CAB80268.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|222642049\|gb\|EEE70181.1\| hypothetical protein OsJ_30259 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1145
DICTYBASE\|DDB_G0283883		1658	mlh3 "MutL DNA mismatch repair	0.170	0.117	0.351	2.2e-26
RGD\|1309227		1442	Mlh3 "mutL homolog 3 (E. coli)	0.178	0.141	0.297	1.9e-23
UNIPROTKB\|E2QZJ2		1424	MLH3 "Uncharacterized protein"	0.178	0.143	0.315	4.3e-23
UNIPROTKB\|E1BNK2		1452	MLH3 "Uncharacterized protein"	0.172	0.136	0.315	5.9e-23
UNIPROTKB\|F1S2R6		1427	MLH3 "Uncharacterized protein"	0.184	0.147	0.317	1.8e-22
UNIPROTKB\|E2QZI8		467	MLH3 "Uncharacterized protein"	0.178	0.436	0.315	6.8e-19
UNIPROTKB\|E1C7F3		1424	LOC100859200 "Uncharacterized	0.213	0.171	0.277	5.3e-18
SGD\|S000006085		715	MLH3 "Protein involved in mism	0.114	0.183	0.314	8.8e-17
ZFIN\|ZDB-GENE-060810-45		1171	mlh3 "mutL homolog 3 (E. coli)	0.069	0.068	0.444	2.5e-16
UNIPROTKB\|Q9UHC1		1453	MLH3 "DNA mismatch repair prot	0.226	0.178	0.279	3.7e-16

DICTYBASE\|DDB_G0283883 mlh3 "MutL DNA mismatch repair protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

 Score = 295 (108.9 bits), Expect = 2.2e-26, Sum P(3) = 2.2e-26
 Identities = 77/219 (35%), Positives = 116/219 (52%)

Query:   901 INKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGK-SVAY 959
             I K  L++ K + Q D KF+   A G + ++DQHA  ERI+LE L  K   GE K  +  
Sbjct:  1459 IPKEMLQNFKFITQWDNKFLICEADGIVLILDQHAVSERIKLEILERKYF-GENKFDLCP 1517

Query:   960 LDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAV 1019
             +       L E   +L++ + + ++ WG+          +FNK         T I +  V
Sbjct:  1518 MPERTRWSLTEYELELMRIYTKPLEQWGF--------KWTFNK---------TSINISQV 1560

Query:  1020 P--CIFGVNLSDVDLLEFLQQLADTDGS-STTPPSVLRVLNSKACRGAIMFGDSLLPSEC 1076
             P  C+ G+ ++D  L EFL QL  + G+ S  PP+  R+L SKACR AI FG+ L    C
Sbjct:  1561 PMFCLVGLGVND--LREFLYQLESSKGATSNRPPAAHRILASKACRTAIKFGNKLSREIC 1618

Query:  1077 ALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL 1115
               ++E+L + ++ FQCAHGRP+ +PL+N   L   +  L
Sbjct:  1619 IKLLEDLNECNIPFQCAHGRPSIIPLINYGKLFSSVKGL 1657

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA;IBA

GO:0005524 "ATP binding" evidence=IEA

GO:0032407 "MutSalpha complex binding" evidence=IBA

GO:0032390 "MutLbeta complex" evidence=IBA

GO:0032300 "mismatch repair complex" evidence=IBA

GO:0016887 "ATPase activity" evidence=IBA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0006200 "ATP catabolic process" evidence=IBA

GO:0005712 "chiasma" evidence=IBA

GO:0003697 "single-stranded DNA binding" evidence=IBA

GO:0000795 "synaptonemal complex" evidence=IBA

RGD\|1309227 Mlh3 "mutL homolog 3 (E. coli)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QZJ2 MLH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BNK2 MLH3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1S2R6 MLH3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QZI8 MLH3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C7F3 LOC100859200 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

SGD\|S000006085 MLH3 "Protein involved in mismatch repair and meiotic recombination" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060810-45 mlh3 "mutL homolog 3 (E. coli)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9UHC1 MLH3 "DNA mismatch repair protein Mlh3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1145
smart00853		140	smart00853, MutL_C, MutL C terminal dimerisation d	3e-24
COG0323		638	COG0323, MutL, DNA mismatch repair enzyme (predict	4e-21
PRK00095		617	PRK00095, mutL, DNA mismatch repair protein; Revie	2e-17
pfam08676		144	pfam08676, MutL_C, MutL C terminal dimerisation do	1e-12
cd03486		141	cd03486, MutL_Trans_MLH3, MutL_Trans_MLH3: transdu	1e-10
cd00782		122	cd00782, MutL_Trans, MutL_Trans: transducer domain	2e-07
cd03485		132	cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_	0.001

>gnl\|CDD\|214857 smart00853, MutL_C, MutL C terminal dimerisation domain	Back alignment and domain information

 Score = 99.4 bits (248), Expect = 3e-24
 Identities = 42/159 (26%), Positives = 62/159 (38%), Gaps = 20/159 (12%)

Query: 911  VLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPE 970
             L QV   +I       L ++DQHAA ERI  E+L  +  +G  +S   L     L L  
Sbjct: 1    ALGQVAGTYILAEREDGLYLLDQHAAHERILYEQLLKQ--AGGLESQPLLIPV-RLELSP 57

Query: 971  IGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDV 1030
                LL+   E ++  G+   I    S                + L +VP +     +  
Sbjct: 58   QEAALLEEHLELLRQLGFELEIFGPQS----------------LILRSVPALLR-QQNLQ 100

Query: 1031 DLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGD 1069
             L+  L  L   +  +  P  +  +L S ACR AI  GD
Sbjct: 101  KLIPELLDLLSDEEENARPSRLEALLASLACRSAIRAGD 139

MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation. Length = 140

>gnl\|CDD\|223400 COG0323, MutL, DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|234630 PRK00095, mutL, DNA mismatch repair protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|219965 pfam08676, MutL_C, MutL C terminal dimerisation domain	Back alignment and domain information

>gnl\|CDD\|239568 cd03486, MutL_Trans_MLH3, MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3)	Back alignment and domain information

>gnl\|CDD\|238405 cd00782, MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family	Back alignment and domain information

>gnl\|CDD\|239567 cd03485, MutL_Trans_hPMS_1_like, MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1145
KOG1977		1142	consensus DNA mismatch repair protein - MLH3 famil	100.0
COG0323		638	MutL DNA mismatch repair enzyme (predicted ATPase)	100.0
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	100.0
PF08676		144	MutL_C: MutL C terminal dimerisation domain; Inter	99.97
KOG1978		672	consensus DNA mismatch repair protein - MLH2/PMS1/	99.94
smart00853		136	MutL_C MutL C terminal dimerisation domain. MutL a	99.91
PF01119		119	DNA_mis_repair: DNA mismatch repair protein, C-ter	99.76
cd03486		141	MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain	99.75
cd00782		122	MutL_Trans MutL_Trans: transducer domain, having a	99.74
cd03485		132	MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: tran	99.72
cd03482		123	MutL_Trans_MutL MutL_Trans_MutL: transducer domain	99.71
cd03483		127	MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain	99.7
cd03484		142	MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: tran	99.62
PRK00095		617	mutL DNA mismatch repair protein; Reviewed	99.45
cd00329		107	TopoII_MutL_Trans MutL_Trans: transducer domain, h	98.92
KOG1979		694	consensus DNA mismatch repair protein - MLH1 famil	98.42
TIGR00585		312	mutl DNA mismatch repair protein MutL. All protein	97.36
KOG1978		672	consensus DNA mismatch repair protein - MLH2/PMS1/	97.04

>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]	Back alignment and domain information

Probab=100.00  E-value=3.4e-95  Score=823.96  Aligned_cols=875  Identities=20%  Similarity=0.179  Sum_probs=708.9

Q ss_pred             CccccccccccccHHHHHHHHHh--hccCCCCccccCCCccCCCCCCCCCceEEEEeecCCCcceeeecCCcceEEecCc
Q 001133            1 MSDINSRYVCKGPIHKLLNHLAA--SFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDW   78 (1145)
Q Consensus         1 ~~fVN~RlV~kt~iHkaln~l~r--sli~~~s~~~~~~~~~~krs~~~~~PvyVLnl~CppseyDVnvhPaKTlVeFkDW   78 (1145)
                      |-|||+|++++|..|+++.+++|  +++++                    |.|||||.||..+|||+|+|+||+|||++|
T Consensus       234 ~l~v~~~~~~~~~kh~~~~q~lR~~~~~~~--------------------P~yvi~v~cp~~ly~vs~epakt~ieF~~w  293 (1142)
T KOG1977|consen  234 FLFVNKRLVLRTKKHKLIDQLLRKESIICK--------------------PKYVINVQCPFCLYDVSMEPAKTLIEFQNW  293 (1142)
T ss_pred             eeeecchhhhccchhhHHHHHHHhhheecc--------------------CcceeecccchhhhhhhcCcccchhhhhcc
Confidence            67999999999999999999999  55666                    669999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHhhcCccCcccc--cccccccCCCCccccccccCccceechHhhhhHHhhhhhchhhhhhhhhhhc
Q 001133           79 EPVLAFIERAIRSAWMKKIAHDSFDV--DMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDHMFHKECERITFQEF  156 (1145)
Q Consensus        79 d~Vl~~ve~aVr~~l~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (1145)
                      ++|+.||++.++.||++...-.-|+.  +.++|+++       |-             +--.+-+-+|..-|..|-|+. 
T Consensus       294 ~~~l~~I~~~~~~~~kkd~~f~~~~G~~~~lad~~~-------Q~-------------~vds~~r~~~~~~~~~i~~~~-  352 (1142)
T KOG1977|consen  294 DTLLFCIQEGVKMFLKKDKLFVELSGEGFSLADATL-------QK-------------RVDSDERSNFQEACNNILDSY-  352 (1142)
T ss_pred             hhhHhHHHHhhhhhhhcceeEEEecCcccccchhhh-------hh-------------hcchhhhhhhhhhhhhhhhhh-
Confidence            99999999999999999888877776  56666665       11             111223445566666665542 


Q ss_pred             ccCchhhccccccceeeccCCCCCCccCCcccccccCCCCCccceeeeeeccccccCCCccccCCccccchhhcccchhh
Q 001133          157 QKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPPLENLKKEGDHLFR  236 (1145)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (1145)
                             +.++..|+                     .|-+|.-     -|    .+|.||..||-  -...+..|+.|+-
T Consensus       353 -------~~~~~~~~---------------------~~krk~~-----~~----n~~~~ss~lf~--a~df~~~g~~l~~  393 (1142)
T KOG1977|consen  353 -------EMFNLQSK---------------------AVKRKTT-----AE----NVNTQSSRLFE--ATDFNTNGAFLYI  393 (1142)
T ss_pred             -------hhhhhhhh---------------------hhhhhhc-----cc----ccCCchhccch--hhccCCCCceEEe
Confidence                   11111111                     1223321     11    35667766663  3445556666543


Q ss_pred             hcccccccccCCCCchhhhccccccc-cccCCCcccccCCCCccccccccccccccceeeeeccceeecccCCcccCccc
Q 001133          237 KECERITFGDAEKDPAELQEENTEME-YVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQYHQSSPHLYSSPL  315 (1145)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (1145)
                      .+    .-|.++          .+|+ -.-|||-+ |-+                                         
T Consensus       394 ~k----svg~p~----------~~~~~~~~~~kd~-~~~-----------------------------------------  417 (1142)
T KOG1977|consen  394 YK----SVGPPH----------SKMTEPSLQNKDS-SCS-----------------------------------------  417 (1142)
T ss_pred             ec----ccCCCc----------ccccccccCcccc-ccc-----------------------------------------
Confidence            21    112211          1111 12233322 111                                         


Q ss_pred             ccccccccchhHhhhcccccccccccChhhhccccccccccCcccccccCCCcchhhhhhhhhhccccCCccCCeeeecc
Q 001133          316 ENLSKEGDHLFREECERITFGEFEKHTPELKEENSKRELVSQPKYSSKLLDCPFAECLSPVLRKIDLHGWTSGNRFSLKG  395 (1145)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (1145)
                      +..--+-|.+.+.|     =||-+||..-..+-.+-.      .  +-.+|-                    --||    
T Consensus       418 ~~~~~~~eti~~S~-----~~e~e~~~~~~~~~~~le------~--~~~~dt--------------------~C~~----  460 (1142)
T KOG1977|consen  418 ESKMLEQETIVASE-----AGENEKHKKSFLEHSSLE------N--LSPFDT--------------------PCHF----  460 (1142)
T ss_pred             chhhhchhhhhhcc-----cccccccccccccccccc------c--cccccC--------------------chhh----
Confidence            11111233333333     256666643332221111      0  111121                    1122    


Q ss_pred             ceeeecccccCCCCccccccccccccc--CCceecccCCCCCCCCCCCCCCCccccccchhhccccCcccccccccCCCC
Q 001133          396 SYFLETCFLADGRSSIPVEGDLLNSQR--GYEYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKKPLRLSCFSQGSP  473 (1145)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~k~~~~~c~~~~~~  473 (1145)
                       .++..|+   .++.++++||++++.+  + ++                    ++|+|++||+.+++|+++++|++|.+.
T Consensus       461 -e~~~~~q---~tt~~~~~~d~lkd~~i~n-q~--------------------k~~kd~~evt~~~gkh~~~~c~~r~~~  515 (1142)
T KOG1977|consen  461 -ELEIWKQ---STTVNGMAADILKDNRIQN-QP--------------------KRFKDATEVTTLWGKHSAQTCGRRNVF  515 (1142)
T ss_pred             -hhhcccc---ccccccchhhhhcChhhhc-cc--------------------ccccchhhhhhhHHHHHhhhcccccee
Confidence             2677788   8999999999999998  5 77                    999999999999999999999999999


Q ss_pred             CCCCCCccCCcccccccCccccccccccccccccchhhhhhccccc---cccccCCCccccc----ccccccCCcccccc
Q 001133          474 PLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQ---SFDSFSRTPLQDE----ASCSQHLPRLSTAG  546 (1145)
Q Consensus       474 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~  546 (1145)
                      .+++|.+|| ++++|..+++|++..|...+..+-+-     .++++   .=|--.|++||++    ..|+      +..+
T Consensus       516 s~~~p~isH-V~~~e~~ep~i~n~~~~~~R~~eTf~-----g~t~~s~~TPD~s~~as~~d~~~~~~nCs------t~~~  583 (1142)
T KOG1977|consen  516 SYSTPFISH-VVQNEETEPSIKNYVRGPTRAQETFG-----GRTRHSVETPDISDLASTLDQLPNKKNCS------TNIS  583 (1142)
T ss_pred             eccCCccee-eeccccccccccccccCCchhhhhcc-----CcccccccCCCccccccccccCccccccc------cccc
Confidence            999999999 99999999999998887776654110     11111   1233449999998    7898      6655


Q ss_pred             --ccccccccchhhhcccCCCCCCcccccccCCCCCcccccCccccccccccccccccCCCCCCCCCCCCCccccccccc
Q 001133          547 --DITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHFIYNNALE  624 (1145)
Q Consensus       547 --~~~~~~d~~~~~~~~~~~~~~e~~~~e~~~~~~s~~~~g~s~s~~~~~ns~w~~~~s~~~~~~~~~~~~~~~~~~~~~  624 (1145)
                        .+.+++..++...+..+ +|+|+.+.++++   +.+++|+|+.|+++|+++|.+||+.+  .+|.|..++..+|++++
T Consensus       584 ~~~~~e~tat~p~~~v~~d-srd~~igskk~i---~r~n~~sS~~Gs~~ls~q~~P~~~~~--~~t~~~sd~~~gCri~~  657 (1142)
T KOG1977|consen  584 YGLENEPTATYPMFHVSND-SRDKLIGSKKPI---VRKNLLSSQLGSLELSLQVEPDILLK--DTTMEHSDSDSGCRIAS  657 (1142)
T ss_pred             ccccCCccccccchhcccc-chhhhhccccce---eeeecchhhhcceeecccccccccCc--cccccccccccccchhh
Confidence              88999999999988777 889999999999   89999999999999999999999998  79999999999999999


Q ss_pred             cccccCCCCCcCCcccccc-CcccccccccccCccccccccccCcccccccCchhHHhhhhccCCCCCcCCccCCCCCCC
Q 001133          625 GHSILGEGTSCGQLADTEE-NYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSREHSDVPFD  703 (1145)
Q Consensus       625 ~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1145)
                      .++++|| +|.+.++.+.. |++|||++   .|++.+|.|  +..+|++..+|++.                        
T Consensus       658 ~~l~~ek-~p~~~~~~s~~nni~~D~e~---~~e~~~~~~--g~~Sr~~~klcs~~------------------------  707 (1142)
T KOG1977|consen  658 HILDSEK-FPFSKKELSLFNNIPLDLEK---SSEFNELPN--GDSSRKDSKLCSAT------------------------  707 (1142)
T ss_pred             hhccccc-CCCchhhhhhhcCccccccc---ccccccCcC--Cchhhhhhhhcccc------------------------
Confidence            9999999 99999999999 99999999   999999999  99999999999988                        


Q ss_pred             CCcccccccc----cccccCchhhhcccccCCCCCCCcccccccccCCCCCcccccccccccccccccccCC--CCCccc
Q 001133          704 KTDWLCSVLS----SIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKS--NAHTLH  777 (1145)
Q Consensus       704 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~sappf~~~k~~~~~l~~~~~~~~~~--~~~~~~  777 (1145)
                       .|..|.+++    .+..++..|++.+|.|+...|++++|+|++|+++||||||+++||+++.|.+..+.++  .+.+.+
T Consensus       708 -~D~~f~~s~~h~~~~~td~~~ir~~~~~y~~~nq~~~gk~~~~~~ra~~~~~~~~k~fi~~~c~d~T~~qN~~cp~~~e  786 (1142)
T KOG1977|consen  708 -QDNSFNKSKTHSNSNTTDNCVIRETPLVYPYNNQKVTGKDSDVLIRASEQSLDSPKGFIMNPCEDATGDQNGICPQSEE  786 (1142)
T ss_pred             -ccccccccccccCCeeecceeeeccceeeecccccccccccchhhhcCccccccccceEEeehhhccCCcCCCCcchhH
Confidence             677777777    6778999999999999999999999999999999999999999999999999999975  677777


Q ss_pred             cccCCCccccccccccccCcccccccCC-CcccCCCcchhhhcccch-------hhHhhhhhcccccccCcccccccccc
Q 001133          778 CAKNSPEAGAFKHLQQSSGVCNANVKPS-SEEEDFRPDFKIESSTIL-------DLEETHKAENFKLSLCPHAHLGAQAE  849 (1145)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~-------~~~~~~~~~~~~~~~~~f~~~~~~~~  849 (1145)
                      |   ...++....         |+.++. .+|+.| +.|+..+. |+       ..+.|..++.-.+..+.|++|.++..
T Consensus       787 ~---~~~aC~et~---------~~~~c~~l~dv~y-~~m~ev~k-~tf~A~dlk~~a~C~tV~vd~~~ed~~q~f~Se~~  852 (1142)
T KOG1977|consen  787 S---KARACSETE---------ESNTCCRLFDVAY-GRMVEVNK-MTFIAPDLKIQAACTTVAVDVVLEDRCQPFRSELV  852 (1142)
T ss_pred             h---hcccchhhh---------hhccchhHHHHHH-HHHHHhhh-cceecccchhhccceEEEeeeehhhhhcccchhhc
Confidence            7   677777666         777777 566655 88887665 33       45679999999999999999999966


Q ss_pred             CccccccccccCCCCCcccCCcccccccCCCcccccccccccccc-cccccCcCcccccCceEEEEEcCeEEEEEeCCeE
Q 001133          850 GTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGE-FFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGTL  928 (1145)
Q Consensus       850 ~~~~d~~tkwrn~~~~~~~~~~s~~i~~q~nIlDISsg~~~l~~~-slVp~rISKe~L~d~KVIGQVdnKYILaE~gdgL  928 (1145)
                      -.-++..++||..+..-+|+..+++.+.+.-..+++.+..++..+ +++|++++|.++..++|+.|++++||.+..-...
T Consensus       853 l~~lk~~~~wr~~~~~~~V~~ES~e~~~~e~~~~v~a~llev~~d~sl~p~~~nk~~i~~~qvlqqvDkkyi~~v~~~~~  932 (1142)
T KOG1977|consen  853 LPFLKRARAWRTVMVDDTVSSESLESLFSEWDNPVFARLLEVAVDVSLYPYRFNKGMIHSMQVLQQVDKKYIACVMSTKT  932 (1142)
T ss_pred             cccchhhhhhccccccccccHHhhhhhccccccchhhcchhhccchhhchhhhcccchhhHHHHHhhchhheeeeeeccc
Confidence            455677899999988889999999999999999999999998776 9999999999999999999999999999999999


Q ss_pred             EEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHHHHHHHhcCcEEEeeccCcccccccccccc
Q 001133          929 AVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQ 1008 (1145)
Q Consensus       929 yIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~keeLEkLGFeIEI~~egsesFGeNsnil~ 1008 (1145)
                      .++|||||+||++.|.+..+....     .+|.+|.++.+-+.++++|..|.+.++.|||++.+...+...|..|..++.
T Consensus       933 ~~~~qha~dek~~~q~~~~k~l~~-----s~li~~l~~kvlpm~~~ll~~Y~~~~~d~gw~~~~~~~~~s~~~~~~~~l~ 1007 (1142)
T KOG1977|consen  933 EENGQHASDEKQQAQGSGRKKLLS-----STLIPPLEIKVLPMQRRLLWCYHKNLEDLGWEFVFPDTSDSLVLVGKVPLC 1007 (1142)
T ss_pred             cccccchhHHHHHhhhhccccccc-----cccccceeEEechhhHHHHHHHHHHhhhhceEEecccccccceecccccee
Confidence            999999999999999998876533     346667888888899999999999999999999987666666777777788


Q ss_pred             ccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhhhcccCCCCCHHHHHHHHHHHhcCCC
Q 001133         1009 RQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSL 1088 (1145)
Q Consensus      1009 ~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkACRSAIKfGDkLS~EEMeaLIrqLfaCen 1088 (1145)
                      +.+..+...++|+++.......++.+++.+|+++.|++++|..+.++|+++|||+||||||.|++.||-.||..|.+|.+
T Consensus      1008 ~~~~~~~~~~~~~~~~~~~~~~e~i~~~~el~~t~gsstlP~tv~kVLnSkACrgAImFgD~L~~qEc~~lI~~Ls~c~l 1087 (1142)
T KOG1977|consen 1008 FVEREANELRRGRSTVTKSIVEEFIREQLELLQTTGSSTLPLTVQKVLNSKACRGAIMFGDGLSLQECCRLIEALSSCQL 1087 (1142)
T ss_pred             cccccchhhccccccccchhHHHHHHHHHHHhccCCCCccCHHHHHHHhhhhhhhceeeCCccCHHHHHHHHHHHHhcCC
Confidence            88888889999999998888888889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCcEEEECCChHHHHHHHHhhhchhHHHHhhccccchHHHHHHHhhhc
Q 001133         1089 CFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTG 1142 (1145)
Q Consensus      1089 PfqCPHGRPTmVpLlSLeELEKkFkRl~~s~~~Wh~l~~~~~~~era~~rl~~~ 1142 (1145)
                      ||+|+||||+|+||+++..|+|+++.. -.+..||++.+.+..++||..|++.+
T Consensus      1088 pFqCAHGRPsmvPladlk~l~kqi~~~-~~k~~~~~~~~r~~~~~~~~tr~~~~ 1140 (1142)
T KOG1977|consen 1088 PFQCAHGRPSMVPLADLKHLEKQIKPN-LTKLRKMAQAWRLFGKAECDTRQSLQ 1140 (1142)
T ss_pred             chhhccCCCCccchhhHHHHHHHhhhh-hHHHHHHHHHHHHhhHhhhhhhhhhc
Confidence            999999999999999999999999987 55667999999999999999998764

>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []	Back alignment and domain information

>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]	Back alignment and domain information

>smart00853 MutL_C MutL C terminal dimerisation domain	Back alignment and domain information

>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL	Back alignment and domain information

>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3)	Back alignment and domain information

>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family	Back alignment and domain information

>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2	Back alignment and domain information

>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL	Back alignment and domain information

>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1)	Back alignment and domain information

>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2)	Back alignment and domain information

>PRK00095 mutL DNA mismatch repair protein; Reviewed	Back alignment and domain information

>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins	Back alignment and domain information

>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]	Back alignment and domain information

>TIGR00585 mutl DNA mismatch repair protein MutL	Back alignment and domain information

>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1145
3ncv_A		220	Ngol Length = 220		2e-06
4fmn_B		240	Structure Of The C-terminal Domain Of The Saccharom		5e-04
4e4w_B		239	Structure Of The C-terminal Domain Of The Saccharom		6e-04

>pdb|3NCV|A Chain A, Ngol Length = 220

Back alignment and structure

Iteration: 1

Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 22/187 (11%) Query: 919 FIPVVAGGTLAVIDQHAADERIRLEEL-RHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQ 977 +I A +L +ID HAA ER+ E++ R + +G +S Q L++P Sbjct: 40 YILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQS-------QHLLIP-------V 85 Query: 978 NFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLL--EF 1035 FA ++ + + H + F L L + + A P + G SDV L + Sbjct: 86 TFAASHEECAALAD-HAETLAGFG--LELSDMGGNTLAVRAAPVMLGK--SDVVSLARDV 140 Query: 1036 LQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHG 1095 L +LA S T R+L + +C G+I G L E ++ +++ T QC HG Sbjct: 141 LGELAQVGSSQTIASHENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHG 200 Query: 1096 RPTTVPL 1102 RPT V L Sbjct: 201 RPTWVKL 207

PyMOL of 3ncv

>pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A Fragment Of Ntg2 Length = 240

Back alignment and structure

>pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Length = 239

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1145
3kdg_A		197	DNA mismatch repair protein MUTL; endonuclease, DN	1e-22
3ncv_A		220	DNA mismatch repair protein MUTL; endonuclease, di	2e-21
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1x9z_A		188	DNA mismatch repair protein MUTL; alpha-beta fold,	2e-08

>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A* Length = 197	Back alignment and structure

 Score = 95.7 bits (239), Expect = 1e-22
 Identities = 44/197 (22%), Positives = 78/197 (39%), Gaps = 30/197 (15%)

Query: 910  KVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLP 969
              + Q+   +I       L +IDQHAA ERI+ E  R KV   E +        QE+++P
Sbjct: 10   YPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEV-------QEMIVP 62

Query: 970  EI------GYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIF 1023
                       +++   ++++  G    + + GS S+            ++     P  F
Sbjct: 63   LTFHYSTNEALIIEQHKQELESVGVF--LESFGSNSY------------IVR--CHPAWF 106

Query: 1024 GVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEEL 1083
                    + E +QQ+ D   +              +C+G+I     L   E   ++++L
Sbjct: 107  PKGEEAELIEEIIQQVLD-SKNIDIKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDL 165

Query: 1084 KQTSLCFQCAHGRPTTV 1100
            + TS  F C HGRP  +
Sbjct: 166  RSTSDPFTCPHGRPIII 182

PyMOL of 3kdg

>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae} Length = 220	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1 Length = 188	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1145
3kdg_A		197	DNA mismatch repair protein MUTL; endonuclease, DN	100.0
3ncv_A		220	DNA mismatch repair protein MUTL; endonuclease, di	100.0
1x9z_A		188	DNA mismatch repair protein MUTL; alpha-beta fold,	100.0
3na3_A		348	DNA mismatch repair protein MLH1; MUTL protein hom	99.61
3h4l_A		367	DNA mismatch repair protein PMS1; ATP binding, DNA	99.57
1h7s_A		365	PMS1 protein homolog 2; DNA repair, GHL ATPase, mi	99.54
1b63_A		333	MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A	99.53

>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*	Back alignment and structure

Probab=100.00  E-value=2.7e-47  Score=384.78  Aligned_cols=193  Identities=21%  Similarity=0.273  Sum_probs=168.2

Q ss_pred             ccccCceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHHHHHH
Q 001133          904 SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQI  983 (1145)
Q Consensus       904 e~L~d~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~keeL  983 (1145)
                      ..++.+++|||++++|||++.+++|||||||||||||+||+|++.+......+|++|. |+.+.+++.|..+++++.+.|
T Consensus         4 ~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~-P~~l~ls~~e~~~l~~~~~~l   82 (197)
T 3kdg_A            4 DRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIV-PLTFHYSTNEALIIEQHKQEL   82 (197)
T ss_dssp             CCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEE-EEEEECCTTHHHHHHHTHHHH
T ss_pred             ccCCCCeEEEEEcCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHHHccCCCCccccCC-CEEEecCHHHHHHHHHHHHHH
Confidence            4577899999999999999999999999999999999999999998766555666665 789999999999999999999


Q ss_pred             HhcCcEEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhh
Q 001133          984 KDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRG 1063 (1145)
Q Consensus       984 EkLGFeIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkACRS 1063 (1145)
                      ++|||+++       .||         ++++.|++||.++........+.++|..+.+.+. ...+....++++++|||+
T Consensus        83 ~~~Gf~~e-------~~g---------~~~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~-~~~~~~~~~~~~~~ACr~  145 (197)
T 3kdg_A           83 ESVGVFLE-------SFG---------SNSYIVRCHPAWFPKGEEAELIEEIIQQVLDSKN-IDIKKLREEAAIMMSCKG  145 (197)
T ss_dssp             HHTTCCCE-------ECS---------TTEEEEEEEETTSCTTCHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHCC
T ss_pred             HhCCCEEE-------ECC---------CCEEEEEecCcccccccHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhHh
Confidence            99999997       365         3489999999999987777788899998876543 223445667999999999


Q ss_pred             hcccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEEEECCChHHHHHHHHhh
Q 001133         1064 AIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL 1115 (1145)
Q Consensus      1064 AIKfGDkLS~EEMeaLIrqLfaCenPfqCPHGRPTmVpLlSLeELEKkFkRl 1115 (1145)
                      |||+|+.|+.+||++||++|++|++||+||||||||++| +.+||+|+|+|.
T Consensus       146 AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l-~~~elek~F~R~  196 (197)
T 3kdg_A          146 SIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHH-STYEMEKMFKRV  196 (197)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEE-EHHHHHHHHCSC
T ss_pred             hccCCCCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEEEe-CHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999 999999999986

PyMOL of 3kdg

>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}	Back alignment and structure

>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1	Back alignment and structure

>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}	Back alignment and structure

>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}	Back alignment and structure

>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*	Back alignment and structure

>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1145
d1x9za_		182	d.292.1.1 (A:) DNA mismatch repair protein MutL {E	3e-25
d1b63a1		115	d.14.1.3 (A:217-331) DNA mismatch repair protein M	5e-06
d1h7sa1		134	d.14.1.3 (A:232-365) DNA mismatch repair protein P	1e-04

>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 182	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: DNA mismatch repair protein MutL
superfamily: DNA mismatch repair protein MutL
family: DNA mismatch repair protein MutL
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (254), Expect = 3e-25
 Identities = 29/208 (13%), Positives = 59/208 (28%), Gaps = 30/208 (14%)

Query: 910  KVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLP 969
            +VL  V      +   G ++++    A+  +R  +L              L     L + 
Sbjct: 5    RVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPG---EAPVCAQPLLIPLRLKVS 61

Query: 970  EIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSD 1029
                  L+     + + G       Q                  +T+ AVP         
Sbjct: 62   AEEKSALEKAQSALAELGIDFQSDAQH-----------------VTIRAVPLPLRQQNLQ 104

Query: 1030 VDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLC 1089
            + + E +  LA               +     R  +        ++   ++ ++++  LC
Sbjct: 105  ILIPELIGYLAKQSVFEP------GNIAQWIARNLMSEHAQWSMAQAITLLADVER--LC 156

Query: 1090 FQCAHGRPTTVPLVNLEALHKQIAQLNN 1117
             Q     P    L+    LH  I  L +
Sbjct: 157  PQLVKTPPGG--LLQSVDLHPAIKALKD 182

PyMOL of d1x9za_

>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]} Length = 115	Back information, alignment and structure

>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 134	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1145
d1x9za_		182	DNA mismatch repair protein MutL {Escherichia coli	99.97
d1b63a1		115	DNA mismatch repair protein MutL {Escherichia coli	99.75
d1h7sa1		134	DNA mismatch repair protein PMS2 {Human (Homo sapi	99.65
d2isya2		76	Iron-dependent regulator {Mycobacterium tuberculos	89.12

>d1x9za_ d.292.1.1 (A:) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNA mismatch repair protein MutL
superfamily: DNA mismatch repair protein MutL
family: DNA mismatch repair protein MutL
domain: DNA mismatch repair protein MutL
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.1e-32  Score=266.68  Aligned_cols=173  Identities=13%  Similarity=0.115  Sum_probs=146.3

Q ss_pred             ceEEEEEcCeEEEEEeCCeEEEEehhHHHHHHhHHHHHHHHhcCCCccccccCcceeEeeCHHHHHHHHHHHHHHHhcCc
Q 001133          909 AKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGW  988 (1145)
Q Consensus       909 ~KVIGQVdnKYILaE~gdgLyIIDQHAAHERILYERLlkkL~sgq~~SQQLLfpPQeLeLP~~E~qLLeE~keeLEkLGF  988 (1145)
                      .+|||||+++|||++.+++|+|||||||||||+||+|++.  .....+|++|+ |+.+.+++.++.+++++++.|+++||
T Consensus         4 grvl~~v~~~Yil~e~~~gl~lidqhaA~eri~~e~l~~~--~~~i~sQ~LL~-P~~l~ls~~e~~~l~~~~~~L~~~Gf   80 (182)
T d1x9za_           4 GRVLTIVHSDCALLERDGNISLLSLPVAERWLRQAQLTPG--EAPVCAQPLLI-PLRLKVSAEEKSALEKAQSALAELGI   80 (182)
T ss_dssp             CEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHSBT--TBCCCEEEEEE-EEEEECCHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhcCEEEEEEeCCceEEEeHHHHHHHHHHHHHHhc--cCCCCccccCC-CeeecCCHHHHHHHHHHHHHHHHcCC
Confidence            3899999999999999999999999999999999998763  33345566565 68999999999999999999999999


Q ss_pred             EEEeeccCccccccccccccccceeEEEEeecccccCCCChhHHHHHHHHHHhcCCCCCChHHHHHHHHHHhhhhhcccC
Q 001133          989 ICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFG 1068 (1145)
Q Consensus       989 eIEI~~egsesFGeNsnil~~g~~tIiIRAVP~IL~~~l~edDL~ELLqeLlEtdgsstiP~~IeeLLASkACRSAIKfG 1068 (1145)
                      ++++       ||          +++.|++||.++........+.++|+.+.+.+.      ...+.+|++|||+|||+|
T Consensus        81 ~~e~-------~g----------~~i~v~~iP~~l~~~~~~~~i~ell~~l~~~~~------~~~~~la~~ac~~aik~~  137 (182)
T d1x9za_          81 DFQS-------DA----------QHVTIRAVPLPLRQQNLQILIPELIGYLAKQSV------FEPGNIAQWIARNLMSEH  137 (182)
T ss_dssp             EEEE-------CS----------SEEEEEEEEGGGTTSCHHHHHHHHHHHHTTCSS------CCHHHHHHHHHHTTSCCC
T ss_pred             EEEc-------cc----------cceeeecCCcccccCCHHHHHHHHHHHHHhCCc------hHHHHHHHHHHHHHHhCC
Confidence            9984       33          368999999999987777788899988875331      234678899999999999


Q ss_pred             CCCCHHHHHHHHHHHhcCCCCCCCCCCCcE-----EEECCChHHHHHHHH
Q 001133         1069 DSLLPSECALIVEELKQTSLCFQCAHGRPT-----TVPLVNLEALHKQIA 1113 (1145)
Q Consensus      1069 DkLS~EEMeaLIrqLfaCenPfqCPHGRPT-----mVpLlSLeELEKkFk 1113 (1145)
                      +.|+.+||.+||++|..     .|||++|+     +.++ ++...-+.|+
T Consensus       138 ~~Ls~~E~~~LL~ele~-----~Cp~~~~~~~~~ll~~i-d~~~~~~~l~  181 (182)
T d1x9za_         138 AQWSMAQAITLLADVER-----LCPQLVKTPPGGLLQSV-DLHPAIKALK  181 (182)
T ss_dssp             CSCCHHHHHHHHHHHHH-----HCHHHHHSCCTTTEEEC-CCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH-----hCCCCCCCCcHHHhHhh-ChHHHHHHhh
Confidence            99999999999999954     49999998     7776 7777666664

PyMOL of d1x9za_

>d1b63a1 d.14.1.3 (A:217-331) DNA mismatch repair protein MutL {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1h7sa1 d.14.1.3 (A:232-365) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure