Citrus Sinensis ID: 001173

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130---

MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG

cccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccEEEEEEEcccccccEEEEEEEEccHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEEccccccccccccccccccccccHHHHcccccccHHHHcccccccccccHHHHHHHHHHHHHHHHcHHHccccEEEEHHHHHHHHHHHHHccccEEcccccEEEccccccHHHHHHHHHHcccccccEEEEEEEEEcccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEEccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccccccccccccccHHcHHcEEEEcccccccccEEEEHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHHHHHHcc

cccHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHcccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccEEEEEEEEccccccEEEEEEEEEEcHHHHHHHHHHHcccccccccccHHHHcccccccHHHHHHHHccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEEEEEcccEEEEcccccHHHHHHHHHHHHccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEHHHccccccccccEEHHHHHHHcccHHccccccHHHHHHHHHcccccccccccccccccccEEEEEcccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcHHcHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEccccccHHHHHHHHHHHHHcccccEEEEEEcccccccccccEEEEccccccccHHHHHHHHHHccccccEEccccHHHHHHHHHHHcccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccEEEcccEEEHHHHHHHHHHHHHHHHHHHHcc

MKLSRRKIKFLQSISLFQVLFILCVVraerpdarllatSNSVAGEVKHVEEFCAMYdicgarsdrkvlncpynipsvkpddllsskvqslcptitgnvcctedqFDTLRTQVQQAIPFLVGCPACLRNFLNLFCeltcspnqslfiNVTSVskvsnnltvdgidyyitdtfgqglyesckdvkfgtmntraldfigggaqnFKDWFAFIGRraaanlpgspytikfwpsapelsgmipmnvsayscadgslgcscgdctsspvcsstappphkssscsvkmgslnakCVDFALAILYIILVSLFFgwgffhrkrersrsfrmkplvnamdgselhsverqkeenlpmqvqmlgtprtrnRIQLSIVQGYMSNFYRKYgkwvarnpTLVLSLSMALVLLLCLGLIRfevetrpeklwvgpgsraaeeklffdshlapfyrIEELILatipdtthgnlpsivTESNIKLLFEIQKKIDGlranysgsmisltdicmkplgqdcatQSVLQYFkmdpknfddfggveHVKYCFQHYtstescmsafkgpldpstalggfsgnnysEASAFVVTypvnnavdregnETKKAVAWEKAFVQLAKDEllpmvqsknltlafssESSIEEELKRESTADAITIVISYLVMFAYISltlgdtphlssfyISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQqlelpletRISNALVEVGPSITLASLSEVLAFAVgsfipmpacRVFSMFAALAVLLDFLLQITAFVALIVFDFLRaedkrvdcipclklsssyadsdkgigqrkpGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRiepgleqkivlprdsylQGYFNNisehlrigpplyFVVKNynyssesrqtnqlcsisqcdsNSLLNEIsraslipqssyiakpaaswLDDFLvwispeafgccrkftngsycppddqppccpsgqsscgsagvckdcttcfhhsdllkdrpstiqfkeklpwflnalpsascakgghgaytnsvdlkgyengivqassfrtyhtplnrqiDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG

mklsrrkikflqsislFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHsverqkeenlpmqvqmlgtprtrnriQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLklsssyadsdkgiGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG

MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTlvlslsmalvlllclglIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYIsskvllglsgvvlvmlsvlgsvgFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMfaalavlldfllQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYcppddqppccpsgqsscgsAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG

*******IKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCT*********************MGSLNAKCVDFALAILYIILVSLFFGWGFFHR*********************************************RNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTL*****************ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSS*****NQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCP**************CGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAI*

*******IKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPV************SCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSF***************************************RIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL**P**TRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG

MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCT*******************VKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFS***********ESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYS*********CSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQP*************GVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG

MKLSRRKIKFLQSISLFQVLFILCVVRAERPDARLLATSNSVAGEVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRS****************************************RIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSS**********RKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1133	2.2.26 [Sep-21-2011]
P56941		1277	Niemann-Pick C1 protein O	yes	no	0.913	0.810	0.344	1e-170
O35604		1277	Niemann-Pick C1 protein O	yes	no	0.898	0.797	0.326	1e-166
O15118		1278	Niemann-Pick C1 protein O	yes	no	0.896	0.794	0.337	1e-166
Q6T3U3		1331	Niemann-Pick C1-like prot	no	no	0.902	0.768	0.327	1e-144
Q9UHC9		1359	Niemann-Pick C1-like prot	no	no	0.905	0.754	0.324	1e-138
Q6T3U4		1333	Niemann-Pick C1-like prot	no	no	0.906	0.770	0.318	1e-133
Q12200		1170	Niemann-Pick type C-relat	yes	no	0.837	0.811	0.288	1e-117
Q19127		1383	Niemann-Pick C1 protein h	yes	no	0.916	0.750	0.245	7e-90
P34389		1274	Niemann-Pick C1 protein h	no	no	0.827	0.736	0.257	1e-76
Q61115		1434	Protein patched homolog 1	no	no	0.195	0.154	0.344	4e-29

>sp\|P56941\|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1	Back alignment and function desciption

 Score =  599 bits (1545), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 393/1142 (34%), Positives = 599/1142 (52%), Gaps = 107/1142 (9%)

Query: 46   VKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT-GNV--CCTE 102
            V+   + C  Y  CG  S  K  NC Y+ P     +     VQ LCP    GNV  CC  
Sbjct: 18   VQVFSQSCVWYGECGIASGDKRYNCRYSGPPKPLPEDGYDLVQELCPGFFFGNVSLCCDV 77

Query: 103  DQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNNL 158
             Q  TL+  +Q  + FL  CP+C  N +NLFCELTCSP QS F+NVT+    V  V+N  
Sbjct: 78   QQLRTLKDNLQLPLQFLSRCPSCFYNLMNLFCELTCSPRQSQFLNVTATEDYVDPVTNQT 137

Query: 159  --TVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRA 213
               V  ++YY+ +TF   +Y +C+DV+  + N +AL  + G    A N  +W  ++  + 
Sbjct: 138  KTNVKELEYYVGETFANAMYNACRDVEAPSSNEKALGLLCGREAQACNATNWIEYMFNKD 197

Query: 214  AANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC---ADGSLG-CSCGDCTSSPVCSSTAP 269
                  +P+TI    S     GM PMN +   C    D   G CSC DC  S VC     
Sbjct: 198  NGQ---APFTITPIFSDLPTHGMEPMNNATKGCDESVDEVTGPCSCQDC--SIVCGPKPQ 252

Query: 270  PPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAM 329
            PP       +    L    +   +   Y+  + +FFG  FF     R R F  +     +
Sbjct: 253  PPPPPVPWRI----LGLDAMYVIMWSSYMAFLIVFFG-AFFAVWCYRKRYFVSE--YTPI 305

Query: 330  DGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVL 389
            DG+   SV    ++        LG    R           +   + ++G +  R+P  V+
Sbjct: 306  DGNIAFSVN-SSDKGQAFCCDPLGAAFERG----------LRRLFAQWGAFCVRHPGCVV 354

Query: 390  SLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIP 449
              S+A ++    GL+   V T P  LW  PGS+A  EK +FD+H  PF+R+E+LI+    
Sbjct: 355  FFSLAFIVACSSGLVFIRVTTDPVDLWSAPGSQARREKEYFDTHFGPFFRMEQLIIRATN 414

Query: 450  DTTHGNLP----------SIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL-- 497
            + +H   P            ++   +  + ++Q  I+ + A+Y+   ++L DIC+ PL  
Sbjct: 415  NQSHIYHPYPAGADVPFGPPLSRDILHQVLDLQTAIENITASYNNETVTLQDICLAPLSP 474

Query: 498  -GQDCATQSVLQYFKMDPKNFD----DFGGV-----EHVKYCFQHYTST-------ESCM 540
              ++C   SVL YF+      D    DF  V      H  YC +   S        + C+
Sbjct: 475  YNKNCTILSVLNYFQNSHSVLDHQVGDFFFVYADYHTHFLYCVRAPASLNDASLLHDPCL 534

Query: 541  SAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKD 600
              F GP+ P   LGG+   NY+ A+A V+T+PVNN  + +  + ++A AWE  F+   K+
Sbjct: 535  GTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTEKLQRAQAWESEFINFVKN 593

Query: 601  ELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSF 660
                  ++ NLT++F +E SIE+EL RES +D  TI+ISY +MF YIS+ LG     S  
Sbjct: 594  -----YKNPNLTISFMAERSIEDELNRESNSDLFTILISYAIMFLYISIALGHIKSCSRL 648

Query: 661  YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHA 720
             + SK+ LG++G+++V+ SV  S+G FS IGV  TLI++EVIPFLVLAVGVDN+ ILV  
Sbjct: 649  LVDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVIPFLVLAVGVDNIFILVQT 708

Query: 721  VKR-QQLE-LPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
             +R ++L+   L+ ++   L EV PS+ L+S SE +AF +G    +PA   FS+FA +AV
Sbjct: 709  YQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGGLSVVPAVHTFSLFAGMAV 768

Query: 779  LLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG-QRKPGLLARYMK 837
            L+DFLLQIT FV+L+  D  R E  R+D + C++       ++ G G Q     L R+ K
Sbjct: 769  LIDFLLQITCFVSLLGLDIKRQEKNRLDVVCCVQ------GAEDGAGVQASESCLFRFFK 822

Query: 838  EVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEH 897
              +A +L    ++  VI++FV     SIA+  ++E GL+Q + +P DSY+  YF ++S +
Sbjct: 823  NSYAPLLLKDWMRPIVIAVFVGVLSFSIAVLNKVEIGLDQSLSMPDDSYVMDYFQSLSRY 882

Query: 898  LRIGPPLYFVV-KNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAAS 956
            L  GPP+YFVV + +NY+S   Q N +C    C+++SL+ +I  A+ +   + I    +S
Sbjct: 883  LHAGPPVYFVVEEGHNYTSLKGQ-NMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSS 941

Query: 957  WLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDL 1016
            W+DD+  WI P++  CCR +                S    C ++ V   C  C   +  
Sbjct: 942  WIDDYFDWIKPQS-SCCRVYN---------------STDQFCNASVVDPTCIRCRPLTSE 985

Query: 1017 LKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPL 1076
             K RP    F   LP FL+  P+  C KGGH AY+++V++ G  +G V A+ F TYHT L
Sbjct: 986  GKQRPQGEDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNGSG-VGATYFMTYHTVL 1044

Query: 1077 NRQIDYVNSMRAAREFSSRVSDSLQME-----IFPYSVFYMYFEQYLDIWRTALINLAIA 1131
                D++++M+ AR  +S ++ ++ +E     +FPYSVFY+++EQYL +    + NL ++
Sbjct: 1045 QASADFIDAMQKARLIASNITRTMGLEASSYRVFPYSVFYVFYEQYLTVIDDTIFNLGVS 1104

Query: 1132 IG 1133
            +G
Sbjct: 1105 LG 1106

Involved in the intracellular trafficking of cholesterol. May play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural and functional integrity of nerve terminals.
Sus scrofa (taxid: 9823)

>sp\|O35604\|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2	Back alignment and function description

>sp\|O15118\|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2	Back alignment and function description

>sp\|Q6T3U3\|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1 SV=1	Back alignment and function description

>sp\|Q9UHC9\|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2	Back alignment and function description

>sp\|Q6T3U4\|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1	Back alignment and function description

>sp\|Q12200\|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1	Back alignment and function description

>sp\|Q19127\|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1 PE=1 SV=2	Back alignment and function description

>sp\|P34389\|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2 PE=3 SV=2	Back alignment and function description

>sp\|Q61115\|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1133
359491908		1309	PREDICTED: niemann-Pick C1 protein-like	0.957	0.828	0.836	0.0
297745553		1242	unnamed protein product [Vitis vinifera]	0.950	0.867	0.837	0.0
224086046		1274	cholesterol transport protein [Populus t	0.962	0.855	0.797	0.0
255539230		1235	hedgehog receptor, putative [Ricinus com	0.944	0.866	0.824	0.0
297744484		2090	unnamed protein product [Vitis vinifera]	0.979	0.531	0.761	0.0
356517933		1283	PREDICTED: niemann-Pick C1 protein-like	0.955	0.844	0.781	0.0
356509590		1257	PREDICTED: niemann-Pick C1 protein-like	0.960	0.865	0.774	0.0
449455603		1244	PREDICTED: niemann-Pick C1 protein-like	0.950	0.865	0.791	0.0
359474967		1234	PREDICTED: niemann-Pick C1 protein [Viti	0.939	0.863	0.778	0.0
449485264		1296	PREDICTED: niemann-Pick C1 protein-like	0.983	0.859	0.750	0.0

>gi\|359491908\|ref\|XP_002272383.2\| PREDICTED: niemann-Pick C1 protein-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1902 bits (4927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 910/1088 (83%), Positives = 1005/1088 (92%), Gaps = 3/1088 (0%)

Query: 47   KHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQFD 106
            +H EE+CAMYDICG RSD KVLNCPY  PSVKPDDLLSSK+QS+CPTI+GNVCCTE QFD
Sbjct: 60   RHSEEYCAMYDICGKRSDGKVLNCPYGSPSVKPDDLLSSKIQSMCPTISGNVCCTEAQFD 119

Query: 107  TLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYY 166
            TLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKV+NNLTVDGI++ 
Sbjct: 120  TLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVNNNLTVDGIEFI 179

Query: 167  ITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKF 226
            ITD FG+GLY SCKDVKFGTMNTRA+DFIG GA+ FK+WFAFIG RAA ++PGSPY I F
Sbjct: 180  ITDAFGEGLYNSCKDVKFGTMNTRAIDFIGAGAKTFKEWFAFIGTRAAPSVPGSPYAINF 239

Query: 227  WPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPP-HKSSSCSVKMGSLN 285
             PS  E SGM PMNVS YSC D SLGCSCGDC S+ VCS  APP  HK  SCSV++GSL 
Sbjct: 240  QPSIAESSGMKPMNVSTYSCGDNSLGCSCGDCPSASVCSGYAPPSLHKEGSCSVRIGSLK 299

Query: 286  AKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENL 345
            AKC++F+LAILYIILV++FFGWG FHR RER+ + RMKP++N MDGSELHS+ R K+ENL
Sbjct: 300  AKCIEFSLAILYIILVTIFFGWGLFHRTRERNPAPRMKPMLNVMDGSELHSMNRPKDENL 359

Query: 346  PMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIR 405
              Q+ +   P+ RN +QLSIVQGYMSNFYR+YG WVAR+PT++L  S+A+VL+LCLGLIR
Sbjct: 360  SSQM-LEDVPQIRNGVQLSIVQGYMSNFYRRYGTWVARHPTIMLCSSLAIVLVLCLGLIR 418

Query: 406  FEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNI 465
            F+VETRPEKLWVGPGS+AAEEK FFDSHLAPFYRIE+L+LATIPD  +G  PSIVTE+NI
Sbjct: 419  FKVETRPEKLWVGPGSKAAEEKQFFDSHLAPFYRIEQLVLATIPDA-NGISPSIVTENNI 477

Query: 466  KLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEH 525
            KLLFEIQKK+DGLRAN+SGSMISLTDICMKPLGQDCATQSVLQYFKMD +N+DD+GGV+H
Sbjct: 478  KLLFEIQKKVDGLRANFSGSMISLTDICMKPLGQDCATQSVLQYFKMDSRNYDDYGGVQH 537

Query: 526  VKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETK 585
            V+YCFQHYTS ++CMSAFK PLDPSTALGGFSGNNYSEASAF+VTYPVNNA+D+EGNET 
Sbjct: 538  VEYCFQHYTSADTCMSAFKAPLDPSTALGGFSGNNYSEASAFIVTYPVNNAIDKEGNETG 597

Query: 586  KAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFA 645
            KAVAWEKAF+Q+ KD+LLPM+QSKNLTL+FSSESSIEEELKRESTADAITI ISYLVMFA
Sbjct: 598  KAVAWEKAFIQIVKDDLLPMMQSKNLTLSFSSESSIEEELKRESTADAITISISYLVMFA 657

Query: 646  YISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFL 705
            YISLTLGDTP LSSFYISSK+ LGL+GV+LVMLSVLGSVGFFSAIGVKSTLIIMEVIPFL
Sbjct: 658  YISLTLGDTPRLSSFYISSKIFLGLAGVMLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFL 717

Query: 706  VLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765
            VLAVGVDNMCILVHAVKRQ LELPLE RISNALVEVGPSITLASL+EVLAFAVG+FIPMP
Sbjct: 718  VLAVGVDNMCILVHAVKRQPLELPLEGRISNALVEVGPSITLASLAEVLAFAVGTFIPMP 777

Query: 766  ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG 825
            ACRVFSMFAALAVLLDFLLQ+TAFVALIVFDFLRAED+R+DC PC+K+SSSYADSDKGIG
Sbjct: 778  ACRVFSMFAALAVLLDFLLQVTAFVALIVFDFLRAEDRRIDCFPCIKISSSYADSDKGIG 837

Query: 826  QRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDS 885
            QRKPGLLARYMKEVHA ILSLWGVK+ VIS+FVAF LASIALCTRIEPGLEQKIVLPRDS
Sbjct: 838  QRKPGLLARYMKEVHAPILSLWGVKLVVISVFVAFALASIALCTRIEPGLEQKIVLPRDS 897

Query: 886  YLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIP 945
            YLQGYFNN+SE+LRIGPPLYFVVKNYNYSSESR TNQLCSISQC+S+SLLNEI+RASLIP
Sbjct: 898  YLQGYFNNVSEYLRIGPPLYFVVKNYNYSSESRHTNQLCSISQCNSDSLLNEIARASLIP 957

Query: 946  QSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCK 1005
            +SSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPP+DQPPCC S   SC   G+CK
Sbjct: 958  ESSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPNDQPPCCASEDGSCYLNGLCK 1017

Query: 1006 DCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQ 1065
            DCTTCF HSDL  DRPST QF+EKLPWFL ALPSA C+KGGHGAYT+SV+LKG+E+GI+Q
Sbjct: 1018 DCTTCFRHSDLYNDRPSTAQFREKLPWFLAALPSADCSKGGHGAYTSSVELKGFESGIIQ 1077

Query: 1066 ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTAL 1125
            ASSFRTYHTPLN+QIDYVNSMRAAREF+SRVSDSL+++IFPYSVFYM+FEQYLDIWRTAL
Sbjct: 1078 ASSFRTYHTPLNKQIDYVNSMRAAREFTSRVSDSLKIQIFPYSVFYMFFEQYLDIWRTAL 1137

Query: 1126 INLAIAIG 1133
            INLAIAIG
Sbjct: 1138 INLAIAIG 1145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297745553\|emb\|CBI40718.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224086046\|ref\|XP_002307793.1\| cholesterol transport protein [Populus trichocarpa] gi\|222857242\|gb\|EEE94789.1\| cholesterol transport protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255539230\|ref\|XP_002510680.1\| hedgehog receptor, putative [Ricinus communis] gi\|223551381\|gb\|EEF52867.1\| hedgehog receptor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|297744484\|emb\|CBI37746.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356517933\|ref\|XP_003527640.1\| PREDICTED: niemann-Pick C1 protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|356509590\|ref\|XP_003523530.1\| PREDICTED: niemann-Pick C1 protein-like [Glycine max]	Back alignment and taxonomy information

>gi\|449455603\|ref\|XP_004145542.1\| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359474967\|ref\|XP_002279611.2\| PREDICTED: niemann-Pick C1 protein [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449485264\|ref\|XP_004157117.1\| PREDICTED: niemann-Pick C1 protein-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1133
TAIR\|locus:2035878		1272	AT1G42470 [Arabidopsis thalian	0.955	0.851	0.715	0.0
ZFIN\|ZDB-GENE-030131-3161		1276	npc1 "Niemann-Pick disease, ty	0.906	0.804	0.337	5.8e-153
ASPGD\|ASPL0000051085		1271	AN2119 [Emericella nidulans (t	0.802	0.715	0.331	1.1e-144
UNIPROTKB\|G4NE97		1275	MGG_00819 "Niemann-Pick C1 pro	0.805	0.716	0.312	4.5e-137
UNIPROTKB\|P56941		1277	NPC1 "Niemann-Pick C1 protein"	0.912	0.809	0.318	5.7e-130
UNIPROTKB\|F1NQT4		1278	NPC1 "Uncharacterized protein"	0.904	0.802	0.315	1.2e-129
UNIPROTKB\|F1SBB5		1277	NPC1 "Niemann-Pick C1 protein"	0.912	0.809	0.317	4e-129
FB\|FBgn0024320		1287	Npc1a "Niemann-Pick type C-1a"	0.905	0.797	0.305	1.4e-126
UNIPROTKB\|F1PB50		1277	NPC1 "Uncharacterized protein"	0.902	0.801	0.316	2.3e-126
UNIPROTKB\|B0JYK2		1277	NPC1 "Uncharacterized protein"	0.906	0.804	0.313	4.8e-126

TAIR\|locus:2035878 AT1G42470 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4075 (1439.5 bits), Expect = 0., P = 0.
 Identities = 781/1091 (71%), Positives = 892/1091 (81%)

Query:    45 EVKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGNVCCTEDQ 104
             E K    +CAMYDICGARSD KVLNCP+NIPSVKPDDLLSSK+QSLCPTITGNVCCTE Q
Sbjct:    11 EAKQSAGYCAMYDICGARSDGKVLNCPFNIPSVKPDDLLSSKIQSLCPTITGNVCCTETQ 70

Query:   105 FDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGID 164
             FDTLR+QVQQAIPF+VGCPACLRNFLNLFCELTCSP+QSLFINVTS +KV NN TVDGI 
Sbjct:    71 FDTLRSQVQQAIPFIVGCPACLRNFLNLFCELTCSPDQSLFINVTSTTKVKNNSTVDGIQ 130

Query:   165 YYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTI 224
             YYITD FG G+YESCK+VKFG+ N+RALDF+G GA+NFK+WF FIG++A  NLPGSPY I
Sbjct:   131 YYITDDFGAGMYESCKNVKFGSSNSRALDFLGAGAKNFKEWFTFIGQKAGVNLPGSPYGI 190

Query:   225 KFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAP-PPHKSSSCSVKMGS 283
              F P+ P  SGM PMNVS YSC D SLGCSCGDC S+  CSS A  P  K  SCS+K+GS
Sbjct:   191 AFLPTPPVSSGMRPMNVSIYSCGDESLGCSCGDCPSAATCSSKAEVPTQKKHSCSIKIGS 250

Query:   284 LNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEE 343
             L  KCVDF LAILYI+LVSLF G G  H  R + ++ +M  L  A    E +SV +QK +
Sbjct:   251 LEVKCVDFILAILYIVLVSLFLGGGLLHPVRGKKKTSQMGTLSEA--SGERNSVNQQKPD 308

Query:   344 NLPMQVQML-GTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTXXXXXXXXXXXXXXXX 402
              +  Q QML  TP+ RN  QLS VQG+++NFY KYG WVAR+PT                
Sbjct:   309 TI--QSQMLQNTPQ-RNWGQLSTVQGHLANFYGKYGIWVARHPTLVLCLSVSVVLLLCVG 365

Query:   403 XIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTE 462
              IRF+VETRP+KLWVG GSRAAEEK FFD+HLAPFYRIE+LI+AT+  ++H   P I+T+
Sbjct:   366 LIRFKVETRPDKLWVGSGSRAAEEKQFFDTHLAPFYRIEQLIIATVQTSSHEKAPEILTD 425

Query:   463 SNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQ-YFKMDPKNFDDFG 521
              NIKLLF+IQKK+DGLRAN+SGSM+SLTDICMKPLG+DCATQSVLQ YFKM P+N+DD+G
Sbjct:   426 DNIKLLFDIQKKVDGLRANHSGSMVSLTDICMKPLGEDCATQSVLQQYFKMKPENYDDYG 485

Query:   522 GVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREG 581
             GV+HVKYCF+H+TSTESC+SAFKGPLDP+TALGGFSGN++SEASAF+VTYPV+N VD +G
Sbjct:   486 GVDHVKYCFEHFTSTESCLSAFKGPLDPTTALGGFSGNSFSEASAFLVTYPVDNFVDNKG 545

Query:   582 NETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL 641
             N+T+KAVAWEKAF+QLAKDELLPMVQ+KNLTL+FSSESSIEEELKRESTAD ITI ISYL
Sbjct:   546 NKTEKAVAWEKAFIQLAKDELLPMVQAKNLTLSFSSESSIEEELKRESTADVITIAISYL 605

Query:   642 VMFAYISLTLGDTPHLSSFYIXXXXXXXXXXXXXXXXXXXXXXXFFSAIGVKSTLIIMEV 701
             VMFAYISLTLGD+P L SFYI                       FFSA+G+KSTLIIMEV
Sbjct:   606 VMFAYISLTLGDSPRLKSFYITSKVLLGLSGVLLVMLSVLGSVGFFSAVGMKSTLIIMEV 665

Query:   702 IPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSF 761
             IPFLVLAVGVDNMCILVHAVKRQ+ ELPLE RISNAL+EVGPSITLASL+E+LAFAVG+F
Sbjct:   666 IPFLVLAVGVDNMCILVHAVKRQEQELPLERRISNALMEVGPSITLASLAEILAFAVGAF 725

Query:   762 IPMPACRVFSMXXXXXXXXXXXXQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSD 821
             I MPA RVFSM            QITAFVALIVFDF R EDKRVDC PC+K S S   ++
Sbjct:   726 IKMPAVRVFSMFAALAVLLDFLLQITAFVALIVFDFRRTEDKRVDCFPCIKTSKSSISAE 785

Query:   822 KGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVL 881
             KG+GQRK GLL RYMKEVHA +LS W VKI VI+ F    +A IAL TRIEPGLEQ+IVL
Sbjct:   786 KGVGQRKAGLLTRYMKEVHAPVLSHWIVKIVVIAFFFGLAMAGIALSTRIEPGLEQQIVL 845

Query:   882 PRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRA 941
             P+DSYLQGYFNNIS +LRIGPPLYFV+KNYNYSSESR TNQLCSI++C+ NSLLNEI+RA
Sbjct:   846 PQDSYLQGYFNNISTYLRIGPPLYFVLKNYNYSSESRHTNQLCSINKCNPNSLLNEIARA 905

Query:   942 SLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYXXXXXXXXXXXXXXXXXXXA 1001
             SL P+ SYIAKPAASWLDDFLVW+SPEAFGCCRKFTNG++                   +
Sbjct:   906 SLTPELSYIAKPAASWLDDFLVWLSPEAFGCCRKFTNGTFCPPDDQPPCCPPGQTSCGLS 965

Query:  1002 GVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYEN 1061
              VCKDCTTCF H+DL  DRPST QFKEKLPWFLNALPSA CAKGGHGAY++SVDL+GY N
Sbjct:   966 EVCKDCTTCFRHADLSSDRPSTTQFKEKLPWFLNALPSADCAKGGHGAYSSSVDLQGYAN 1025

Query:  1062 GIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIW 1121
             GI+QASSFRTYHTPLN+Q+D+VNSMRAA+EFS++VS SL+MEI+PYSVFYM+FEQYLDIW
Sbjct:  1026 GIIQASSFRTYHTPLNKQVDFVNSMRAAQEFSAKVSRSLKMEIYPYSVFYMFFEQYLDIW 1085

Query:  1122 RTALINLAIAI 1132
             +TALINL+IAI
Sbjct:  1086 KTALINLSIAI 1096

GO:0008158 "hedgehog receptor activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

ZFIN\|ZDB-GENE-030131-3161 npc1 "Niemann-Pick disease, type C1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000051085 AN2119 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NE97 MGG_00819 "Niemann-Pick C1 protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

UNIPROTKB\|P56941 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NQT4 NPC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SBB5 NPC1 "Niemann-Pick C1 protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

FB\|FBgn0024320 Npc1a "Niemann-Pick type C-1a" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PB50 NPC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|B0JYK2 NPC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P56941	NPC1_PIG	No assigned EC number	0.3441	0.9135	0.8104	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00002883001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (1263 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1133
TIGR00917		1204	TIGR00917, 2A060601, Niemann-Pick C type protein f	0.0
pfam12349		153	pfam12349, Sterol-sensing, Sterol-sensing domain o	3e-60
pfam02460		801	pfam02460, Patched, Patched family	6e-49
TIGR00918		1145	TIGR00918, 2A060602, The Eukaryotic (Putative) Ste	2e-33
COG1033		727	COG1033, COG1033, Predicted exporters of the RND s	1e-07
TIGR00921		719	TIGR00921, 2A067, The (Largely Archaeal Putative)	3e-06
COG1033		727	COG1033, COG1033, Predicted exporters of the RND s	4e-05
TIGR00921		719	TIGR00921, 2A067, The (Largely Archaeal Putative)	6e-04
TIGR00920		889	TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-co	0.001
TIGR00833		910	TIGR00833, actII, Transport protein	0.003
pfam03176		332	pfam03176, MMPL, MMPL family	0.003

>gnl\|CDD\|233184 TIGR00917, 2A060601, Niemann-Pick C type protein family	Back alignment and domain information

 Score = 1275 bits (3300), Expect = 0.0
 Identities = 619/1106 (55%), Positives = 770/1106 (69%), Gaps = 72/1106 (6%)

Query: 53   CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLC----PTITGNVCCTEDQFDTL 108
            C  Y ICGARSD KVLNCPYN PS KP D  SS +QSLC    P I+GNVCCTE QFDTL
Sbjct: 1    CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTL 60

Query: 109  RTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYIT 168
            R+ VQ AIPFLV CPACLRN LNLFCELTCSP+QSLF+NVTS +KV  N TVD + YYIT
Sbjct: 61   RSNVQLAIPFLVRCPACLRNLLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYIT 120

Query: 169  DTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYTIKFWP 228
            D F  G+Y SC +VKF + N+RALDF+ GGA NF +W  +IG+ A  N PG+P+ I F P
Sbjct: 121  DDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNWIGQMAGVNNPGAPFGITFLP 180

Query: 229  S-APELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTA-PPPHKSSSCSVKMGSLNA 286
            +  P  SGM PMNVS YSC D  LGCSCG   S   CS  A PP     SCS+ +G    
Sbjct: 181  TPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDCSCKAKPPTPPKPSCSIILG---V 237

Query: 287  KCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLP 346
               D  +AILYI+LV +F G G     R + ++  M  L  A    E++S   Q ++N P
Sbjct: 238  DAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEA--SGEINSSNNQSDQNTP 295

Query: 347  MQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRF 406
                       RN  QL+ V+G+++ F+ KYG WVARNP LVL LS+++VLLL +GLI F
Sbjct: 296  ----------QRNEGQLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFF 345

Query: 407  EVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIK 466
            EVET P KLWV PGSRAA EK FFD+H  PFYRIE+LI+A +  + H   P ++ + N+K
Sbjct: 346  EVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRIEQLIIAAVQTSQHEKFPPVLDDDNLK 405

Query: 467  LLFEIQKKIDGLRANYSGSMISLTDICMKPLGQD-CATQSVLQYF-----KMDPKNFDDF 520
            LLF+IQKKI  L AN    +I+L DIC  PL    C   S   YF     K+DP+N+DD 
Sbjct: 406  LLFDIQKKISQLFAN----LITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDPENYDDG 461

Query: 521  GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDRE 580
             GV++VKYCF+ +TS ESC+SAF GP+DP+TALGGFSGNN+SEASAFVVT+PVNN    +
Sbjct: 462  FGVDYVKYCFECFTSPESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNN-FVNK 520

Query: 581  GNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISY 640
             ++ +KAVAWEKAF+Q AK+ LLP VQ+K L ++FSSE SIE+ELKRESTAD ITI++SY
Sbjct: 521  TDKLEKAVAWEKAFIQFAKNYLLPNVQAK-LDISFSSERSIEDELKRESTADVITILVSY 579

Query: 641  LVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIME 700
            LVMFAYISL+LG +    S +I SKVLLG+SGV++V+ SV+GSVG FS IG+K+TLIIME
Sbjct: 580  LVMFAYISLSLGHSKRFKSLFIDSKVLLGISGVLIVLASVVGSVGVFSYIGLKATLIIME 639

Query: 701  VIPFLVLAVGVDNMCILVHAVKRQQ-----------LELPLETRISNALVEVGPSITLAS 749
            VIPFLVLAVGVDN+ ILV   +R +            EL LE ++  AL EVGPSITLAS
Sbjct: 640  VIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGEVGPSITLAS 699

Query: 750  LSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIP 809
            LSE LAF +G+   MPA R FS+FA LAV +DFLLQITAFVAL+V DF R ED RVDC P
Sbjct: 700  LSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFP 759

Query: 810  CLKLSSSYADSDKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCT 869
            C+K S S   ++KG GQRK GLL R+ KEV+A  L  W VKI VI+ F    +  IAL T
Sbjct: 760  CIKGSKSSISAEKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALAT 819

Query: 870  RIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVK-NYNYSSESRQTNQLCSISQ 928
            RI+ GL+Q++ LP+DSYLQ YF +++  L +GPP+YFV+K +YNY+    Q N++C+   
Sbjct: 820  RIDIGLDQQLALPQDSYLQIYFASLTPLLEVGPPVYFVLKGDYNYTDSESQ-NKVCTGGG 878

Query: 929  CDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCP-PDDQ 987
            C+ +S++N  +        +YIAKPA+SWLDD+  W SP++  CCRKFTNG++C  PD  
Sbjct: 879  CNKDSIVNVFNNL------TYIAKPASSWLDDYFDWASPQSSCCCRKFTNGTFCNGPDPS 932

Query: 988  PPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGH 1047
                               C  C   S   + RPST QFKE LP+FLN  PSA CAKGGH
Sbjct: 933  -------------------CFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGH 973

Query: 1048 GAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPY 1107
             AY+++VDL+G+ N I+QAS F TYHTPLN Q D++N++RAARE S+ V+ SL+ME+FPY
Sbjct: 974  AAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPY 1033

Query: 1108 SVFYMYFEQYLDIWRTALINLAIAIG 1133
            SVFY++FEQYL IW  ALINL I++G
Sbjct: 1034 SVFYVFFEQYLTIWSDALINLGISLG 1059

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis [Transport and binding proteins, Other]. Length = 1204

>gnl\|CDD\|192997 pfam12349, Sterol-sensing, Sterol-sensing domain of SREBP cleavage-activation	Back alignment and domain information

>gnl\|CDD\|217050 pfam02460, Patched, Patched family	Back alignment and domain information

>gnl\|CDD\|233185 TIGR00918, 2A060602, The Eukaryotic (Putative) Sterol Transporter (EST) Family	Back alignment and domain information

>gnl\|CDD\|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family	Back alignment and domain information

>gnl\|CDD\|223964 COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|233187 TIGR00921, 2A067, The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family	Back alignment and domain information

>gnl\|CDD\|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A reductase	Back alignment and domain information

>gnl\|CDD\|129913 TIGR00833, actII, Transport protein	Back alignment and domain information

>gnl\|CDD\|217407 pfam03176, MMPL, MMPL family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1133
TIGR00917		1204	2A060601 Niemann-Pick C type protein family. The m	100.0
KOG1933		1201	consensus Cholesterol transport protein (Niemann-P	100.0
TIGR00918		1145	2A060602 The Eukaryotic (Putative) Sterol Transpor	100.0
PF02460		798	Patched: Patched family; InterPro: IPR003392 The t	100.0
KOG1934		868	consensus Predicted membrane protein (patched supe	100.0
KOG1935		1143	consensus Membrane protein Patched/PTCH [Signal tr	100.0
COG1033		727	Predicted exporters of the RND superfamily [Genera	100.0
TIGR00921		719	2A067 The (Largely Archaeal Putative) Hydrophobe/A	100.0
TIGR00833		910	actII Transport protein. Characterized members of	99.97
COG1033		727	Predicted exporters of the RND superfamily [Genera	99.96
PF12349		153	Sterol-sensing: Sterol-sensing domain of SREBP cle	99.96
TIGR00920		886	2A060605 3-hydroxy-3-methylglutaryl-coenzyme A red	99.96
TIGR00921		719	2A067 The (Largely Archaeal Putative) Hydrophobe/A	99.93
TIGR03480		862	HpnN hopanoid biosynthesis associated RND transpor	99.93
TIGR00833		910	actII Transport protein. Characterized members of	99.88
PF03176		333	MMPL: MMPL family; InterPro: IPR004869 Proteins of	99.88
COG2409		937	Predicted drug exporters of the RND superfamily [G	99.79
TIGR03480		862	HpnN hopanoid biosynthesis associated RND transpor	99.74
PF02460		798	Patched: Patched family; InterPro: IPR003392 The t	99.72
PRK10614		1025	multidrug efflux system subunit MdtC; Provisional	99.53
TIGR00918		1145	2A060602 The Eukaryotic (Putative) Sterol Transpor	99.52
KOG1934		868	consensus Predicted membrane protein (patched supe	99.49
PRK10555		1037	aminoglycoside/multidrug efflux system; Provisiona	99.47
PRK09579		1017	multidrug efflux protein; Reviewed	99.46
PRK13022		289	secF preprotein translocase subunit SecF; Reviewed	99.46
TIGR00915		1044	2A0602 The (Largely Gram-negative Bacterial) Hydro	99.46
PRK10503		1040	multidrug efflux system subunit MdtB; Provisional	99.42
PRK09577		1032	multidrug efflux protein; Reviewed	99.42
TIGR00916		192	2A0604s01 protein-export membrane protein, SecD/Se	99.41
PRK13024		755	bifunctional preprotein translocase subunit SecD/S	99.4
PRK15127		1049	multidrug efflux system protein AcrB; Provisional	99.4
PRK13023		758	bifunctional preprotein translocase subunit SecD/S	99.35
COG0841		1009	AcrB Cation/multidrug efflux pump [Defense mechani	99.35
TIGR00914		1051	2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu	99.33
TIGR00917		1204	2A060601 Niemann-Pick C type protein family. The m	99.33
PF00873		1021	ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010	99.32
PRK14726		855	bifunctional preprotein translocase subunit SecD/S	99.3
PRK05812		498	secD preprotein translocase subunit SecD; Reviewed	99.26
TIGR00966		246	3a0501s07 protein-export membrane protein SecF. Th	99.21
PRK08578		292	preprotein translocase subunit SecF; Reviewed	99.2
PRK12911		1403	bifunctional preprotein translocase subunit SecD/S	99.2
TIGR01129		397	secD protein-export membrane protein SecD. SecD fr	99.2
PRK12933		604	secD preprotein translocase subunit SecD; Reviewed	99.12
TIGR00914		1051	2A0601 heavy metal efflux pump (cobalt-zinc-cadmiu	99.12
PRK13024		755	bifunctional preprotein translocase subunit SecD/S	99.11
PF02355		189	SecD_SecF: Protein export membrane protein; InterP	99.04
TIGR00915		1044	2A0602 The (Largely Gram-negative Bacterial) Hydro	99.03
PRK13021		297	secF preprotein translocase subunit SecF; Reviewed	99.0
PRK15127		1049	multidrug efflux system protein AcrB; Provisional	98.98
PRK14726		855	bifunctional preprotein translocase subunit SecD/S	98.93
PRK10503		1040	multidrug efflux system subunit MdtB; Provisional	98.91
PRK09579		1017	multidrug efflux protein; Reviewed	98.9
PRK10555		1037	aminoglycoside/multidrug efflux system; Provisiona	98.87
COG0341		305	SecF Preprotein translocase subunit SecF [Intracel	98.82
PRK10614		1025	multidrug efflux system subunit MdtC; Provisional	98.79
PRK09577		1032	multidrug efflux protein; Reviewed	98.79
PF00873		1021	ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR0010	98.78
COG3696		1027	Putative silver efflux pump [Inorganic ion transpo	98.77
COG4258		788	Predicted exporter [General function prediction on	98.66
PRK08343		417	secD preprotein translocase subunit SecD; Reviewed	98.65
PRK13023		758	bifunctional preprotein translocase subunit SecD/S	98.62
PRK12911		1403	bifunctional preprotein translocase subunit SecD/S	98.58
COG0342		506	SecD Preprotein translocase subunit SecD [Intracel	98.57
COG4258		788	Predicted exporter [General function prediction on	98.57
KOG3664		999	consensus Predicted patched transmembrane receptor	98.42
COG0841		1009	AcrB Cation/multidrug efflux pump [Defense mechani	98.16
KOG1935		1143	consensus Membrane protein Patched/PTCH [Signal tr	97.85
COG3696		1027	Putative silver efflux pump [Inorganic ion transpo	97.81
COG2409		937	Predicted drug exporters of the RND superfamily [G	97.58
PF03024		167	Folate_rec: Folate receptor family; InterPro: IPR0	94.91
KOG1933		1201	consensus Cholesterol transport protein (Niemann-P	91.23

>TIGR00917 2A060601 Niemann-Pick C type protein family	Back alignment and domain information

Probab=100.00  E-value=2.1e-187  Score=1792.20  Aligned_cols=1025  Identities=57%  Similarity=0.958  Sum_probs=880.1

Q ss_pred             eeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHhhhhhccCChhHHhh
Q 001173           53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT----GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRN  128 (1133)
Q Consensus        53 C~~~g~Cg~~~~~~~~~C~~~~~a~~~~~~~~~~l~~~Cp~~~----~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~~N  128 (1133)
                      |+|||+||++++++++||++|++|++|+++.+++|+++||+++    +++|||++|+++|++||++|+++++|||||++|
T Consensus         1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N   80 (1204)
T TIGR00917         1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN   80 (1204)
T ss_pred             CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence            9999999999999999999999999999999999999999854    479999999999999999999999999999999


Q ss_pred             HhhhccccccCCCCCcceEEEeecccCCCeeEEEEEEEEcchhchHHhhccccCCcCCCChhHHhhcCCC---CcCHHHH
Q 001173          129 FLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDW  205 (1133)
Q Consensus       129 f~~~~C~~tCsP~Qs~F~~vt~~~~~~~~~~V~~~~~~v~~~~~~~~ydSCk~v~~~~~~~~am~~~gg~---a~~~~~~  205 (1133)
                      |+++||+||||||||+||+||++++.+++..|+|+||||+++||+++|||||||++|++|++|||+||||   +|||++|
T Consensus        81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w  160 (1204)
T TIGR00917        81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW  160 (1204)
T ss_pred             HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence            9999999999999999999999976556667999999999999999999999999999999999999998   7899999


Q ss_pred             HHhhhccCCCCCCCCceeEEecCCCCC-CCCcccCCCCCCCCCCC----CCCccccCCCCCCCCCCCCCCCCCCCCceEe
Q 001173          206 FAFIGRRAAANLPGSPYTIKFWPSAPE-LSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSSCSVK  280 (1133)
Q Consensus       206 l~flG~~~~~~~~~sPfqInf~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~~~sCp~~~~~~~~~~~c~~~  280 (1133)
                      |+||||++   ++||||||||+++... ..+++|||..+++|||.    .++|||+||++  |||.++++++++++|+++
T Consensus       161 ~~f~G~~~---~~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~--~c~~~~~~~~~~~~~~~~  235 (1204)
T TIGR00917       161 IGQMAGVN---NPGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDC--SCKAKPPTPPKPSCSIIL  235 (1204)
T ss_pred             HHhcCCCC---CCCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchh--hCCCCCCCCCCCCceEEE
Confidence            99999984   3589999999987532 34899999999999986    48999999999  999877766668888886


Q ss_pred             ecCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccCCCccchhhhhccccCchhhhhccCCCccccc
Q 001173          281 MGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNR  360 (1133)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (1133)
                      .    ++|++|+++++|++++++++.++++.+++++++..........++... +..+.   +... +....+      +
T Consensus       236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~-~~~~~~------~  300 (1204)
T TIGR00917       236 G----VDAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEIN-SSNNQ---SDQN-TPQRNE------G  300 (1204)
T ss_pred             c----CcchhHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccc-ccccc---cccc-cccccc------c
Confidence            4    679999999999887776665554444333221111110000000000 00000   0000 101111      1


Q ss_pred             chhhhHHHHHHHHHHHHchhhhccchHHHHHHHHHHHHHHhhccceEEeccCcccccCCCCHHHHHHHHhhhccCCCcce
Q 001173          361 IQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRI  440 (1133)
Q Consensus       361 ~~~~~~~~~L~~~F~~lG~~var~P~~vlli~lll~~~l~~Gl~~l~~etdp~~Lwvp~~s~a~~e~~~f~~~Fgp~~r~  440 (1133)
                       ....++++|+++|++||.+++||||++|++++++++++++|+.++++++||++||+|+++++++|+++|+++|||++|+
T Consensus       301 -~~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~  379 (1204)
T TIGR00917       301 -QLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRI  379 (1204)
T ss_pred             -hhhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccce
Confidence             1348999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeccCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccCccccccccccccCC-CCcccchhhhhhhcCCCCCCC
Q 001173          441 EELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDD  519 (1133)
Q Consensus       441 eqviI~~~~~~~~~~g~nvl~~e~L~~i~~Lq~~I~~i~~~~~~~~~sl~DiC~kp~~-~~C~v~S~~~yf~~~~~~~~~  519 (1133)
                      +|++|+++..+.....++++++++|+++++|+++|++++.    ++++++|+|+||.+ ..|.++|+++||+++.+.+++
T Consensus       380 eqvii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~----~~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~  455 (1204)
T TIGR00917       380 EQLIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA----NLITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDP  455 (1204)
T ss_pred             EEEEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc----cCCChhccccccCCCCCCccCCHHHHhccChhhcCc
Confidence            9999887521110112469999999999999999998852    36899999999985 689999999999987554422


Q ss_pred             c--------CcccchhhhccccCCccccccccCCCCCCCccCCCcCCCcccceeEEEEEEEecccccccccchHHHHHHH
Q 001173          520 F--------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWE  591 (1133)
Q Consensus       520 ~--------~~~~~l~~~~~~~~~~~~cl~~~g~Pl~~~~~lGG~~~~~~~~A~Alvlt~~l~n~~~~~~~~~~~a~~WE  591 (1133)
                      .        ++.+++.+|...   +.+|++.||+|++|+.++||+.++++.+|+|+++||.++|+.++ ++..+.+.+||
T Consensus       456 ~~~~~~~~~~~~~~~~~c~~~---p~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE  531 (1204)
T TIGR00917       456 ENYDDGFGVDYVKYCFECFTS---PESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWE  531 (1204)
T ss_pred             ccccccccccHHHhhhccccC---cchhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCC-chhhhHHHHHH
Confidence            1        245566677543   34699999999999999999988889999999999999986432 23457899999


Q ss_pred             HHHHHHHHhhcccccCCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccchhhhHH
Q 001173          592 KAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLS  671 (1133)
Q Consensus       592 ~~f~~~v~~~~~~~~~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk~~lgl~  671 (1133)
                      ++|.+.++++..+. ...+++++|++++|+++|+++.+..|+++++++|++|++|+++++++++.+++++++||+++|++
T Consensus       532 ~~f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~  610 (1204)
T TIGR00917       532 KAFIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGIS  610 (1204)
T ss_pred             HHHHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHH
Confidence            99999998764221 12368999999999999999999999999999999999999999998766667889999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHHhc--CC---------CHHHHHHHHHHH
Q 001173          672 GVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL--EL---------PLETRISNALVE  740 (1133)
Q Consensus       672 gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~~~--~~---------~~~e~i~~al~~  740 (1133)
                      |++++++|+++++|+++|+|+++++++++++|||+|||||||+|+++++|++...  +.         ++++|++++|++
T Consensus       611 gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~  690 (1204)
T TIGR00917       611 GVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGE  690 (1204)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHH
Confidence            9999999999999999999999998789999999999999999999999987532  22         789999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccCCCCccCC
Q 001173          741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADS  820 (1133)
Q Consensus       741 ~g~si~ltslt~~~~F~~~~~s~~p~vr~F~l~aaiav~~~~l~~lt~fpalL~l~~rR~~~~r~d~~~c~~~~~~~~~~  820 (1133)
                      +|+||++|++|+++||++|+++++|++|.||+++|+||+++|++|+|+|||+|++|.||++.+|+|++||++.++.....
T Consensus       691 ~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~  770 (1204)
T TIGR00917       691 VGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISA  770 (1204)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccEEEeeccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999875432111


Q ss_pred             CCCCCCCCcchHHHHHHHHhhhhhcccceeehhHHHHHHHHHHHHhhhcccCCCcccccCCCCCchHhHHHHHHHhhcCC
Q 001173          821 DKGIGQRKPGLLARYMKEVHATILSLWGVKIAVISLFVAFTLASIALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRI  900 (1133)
Q Consensus       821 ~~~~~~~~~~~l~~f~~~~yap~l~~~~~k~~Vl~~f~~~l~~si~g~~~i~~gld~~~~lP~dSyl~~y~~~~~~~f~~  900 (1133)
                      +....+.+++.+.+||+++|+|+|+++++|++|+++|++++++|+||+++|++|+||++++|+|||+++||+.+++||+.
T Consensus       771 ~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~  850 (1204)
T TIGR00917       771 EKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEV  850 (1204)
T ss_pred             ccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhcc
Confidence            11112345578999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCEEEEEe-cCCCCChhHhhhhhccccccCcchHHHHHHHhhcCCCCccccCCCcchHHHHHhhhccccccccc-ccCC
Q 001173          901 GPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTN  978 (1133)
Q Consensus       901 g~pvy~Vv~-~~dy~~~~~~q~~~c~~~~C~~~sl~~~l~~~~~~~~~s~i~~~~~sWlddf~~wl~~~~~~ccr-~~~~  978 (1133)
                      |||||||++ ++||++++ +|+++||.++|+++||.+++      ++.+|+++|+++|||||++|++|. ++||| ...+
T Consensus       851 gppvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~~------~~~~~i~~~~~sWlddf~~wl~~~-~~cc~~~~~~  922 (1204)
T TIGR00917       851 GPPVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNVF------NNLTYIAKPASSWLDDYFDWASPQ-SSCCCRKFTN  922 (1204)
T ss_pred             CCcEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHhh------cccchhcCCchHHHHHHHHHhCcc-ccceeecCCC
Confidence            999999999 59999986 57899999999999999854      466789999999999999999986 68999 4566


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCCCCCCCChhhHHhhhHHhhccCCCccccCCCCCCccccccccC
Q 001173          979 GSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKG 1058 (1133)
Q Consensus       979 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~p~~~~F~~~L~~fl~~~p~~~C~~gg~~~y~~~v~~~~ 1058 (1133)
                      +.+|++.+                  +.|.+|+.-..-..++|++++|++||++||+++|+.+|++||+++|+++++++.
T Consensus       923 ~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~  984 (1204)
T TIGR00917       923 GTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQG  984 (1204)
T ss_pred             CCcCCCcc------------------ccccccccccccccCCCCHHHHHHHHHHHhcCCCccccccccccccccceEeec
Confidence            78886332                  356666642122257999999999999999999999999999999999999864


Q ss_pred             CCCceEEEEEEEEeccCCCChHHHHHHHHHHHHHHHhhcccCCCceeeccccchhhhhHHHHHHHHHHHHHHHhC
Q 001173         1059 YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIG 1133 (1133)
Q Consensus      1059 ~~~~~I~as~F~~~~~~l~~~~d~i~a~~~~r~ia~~~~~~~~~~vf~ys~~yvf~eQYl~I~~~t~~~l~~al~ 1133 (1133)
                      .+++.|.|||||+||++|++|+|+++||+++|+||++++++.+++|||||++|+|||||++|++++++++++|++
T Consensus       985 ~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~ 1059 (1204)
T TIGR00917       985 HANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLG 1059 (1204)
T ss_pred             CCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHH
Confidence            445679999999999999999999999999999999998767899999999999999999999999999999874

>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]	Back alignment and domain information

>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family	Back alignment and domain information

>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog	Back alignment and domain information

>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]	Back alignment and domain information

>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]	Back alignment and domain information

>COG1033 Predicted exporters of the RND superfamily [General function prediction only]	Back alignment and domain information

>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family	Back alignment and domain information

>TIGR00833 actII Transport protein	Back alignment and domain information

>COG1033 Predicted exporters of the RND superfamily [General function prediction only]	Back alignment and domain information

>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation	Back alignment and domain information

>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase	Back alignment and domain information

>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family	Back alignment and domain information

>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN	Back alignment and domain information

>TIGR00833 actII Transport protein	Back alignment and domain information

>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria	Back alignment and domain information

>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]	Back alignment and domain information

>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN	Back alignment and domain information

>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog	Back alignment and domain information

>PRK10614 multidrug efflux system subunit MdtC; Provisional	Back alignment and domain information

>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family	Back alignment and domain information

>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]	Back alignment and domain information

>PRK10555 aminoglycoside/multidrug efflux system; Provisional	Back alignment and domain information

>PRK09579 multidrug efflux protein; Reviewed	Back alignment and domain information

>PRK13022 secF preprotein translocase subunit SecF; Reviewed	Back alignment and domain information

>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	Back alignment and domain information

>PRK10503 multidrug efflux system subunit MdtB; Provisional	Back alignment and domain information

>PRK09577 multidrug efflux protein; Reviewed	Back alignment and domain information

>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family	Back alignment and domain information

>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed	Back alignment and domain information

>PRK15127 multidrug efflux system protein AcrB; Provisional	Back alignment and domain information

>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed	Back alignment and domain information

>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]	Back alignment and domain information

>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium)	Back alignment and domain information

>TIGR00917 2A060601 Niemann-Pick C type protein family	Back alignment and domain information

>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []	Back alignment and domain information

>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional	Back alignment and domain information

>PRK05812 secD preprotein translocase subunit SecD; Reviewed	Back alignment and domain information

>TIGR00966 3a0501s07 protein-export membrane protein SecF	Back alignment and domain information

>PRK08578 preprotein translocase subunit SecF; Reviewed	Back alignment and domain information

>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed	Back alignment and domain information

>TIGR01129 secD protein-export membrane protein SecD	Back alignment and domain information

>PRK12933 secD preprotein translocase subunit SecD; Reviewed	Back alignment and domain information

>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium)	Back alignment and domain information

>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed	Back alignment and domain information

>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway	Back alignment and domain information

>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	Back alignment and domain information

>PRK13021 secF preprotein translocase subunit SecF; Reviewed	Back alignment and domain information

>PRK15127 multidrug efflux system protein AcrB; Provisional	Back alignment and domain information

>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional	Back alignment and domain information

>PRK10503 multidrug efflux system subunit MdtB; Provisional	Back alignment and domain information

>PRK09579 multidrug efflux protein; Reviewed	Back alignment and domain information

>PRK10555 aminoglycoside/multidrug efflux system; Provisional	Back alignment and domain information

>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]	Back alignment and domain information

>PRK10614 multidrug efflux system subunit MdtC; Provisional	Back alignment and domain information

>PRK09577 multidrug efflux protein; Reviewed	Back alignment and domain information

>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []	Back alignment and domain information

>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG4258 Predicted exporter [General function prediction only]	Back alignment and domain information

>PRK08343 secD preprotein translocase subunit SecD; Reviewed	Back alignment and domain information

>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed	Back alignment and domain information

>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed	Back alignment and domain information

>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]	Back alignment and domain information

>COG4258 Predicted exporter [General function prediction only]	Back alignment and domain information

>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]	Back alignment and domain information

>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]	Back alignment and domain information

>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]	Back alignment and domain information

>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]	Back alignment and domain information

>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]	Back alignment and domain information

>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins	Back alignment and domain information

>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1133
3gkh_A		232	Npc1(ntd) Length = 232		4e-23
3qnt_A		265	Npc1l1 (Ntd) Structure Length = 265		2e-18

>pdb|3GKH|A Chain A, Npc1(ntd) Length = 232

Back alignment and structure

Iteration: 1

Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/223 (33%), Positives = 105/223 (47%), Gaps = 19/223 (8%) Query: 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTI---TGNVCCTEDQFDTLR 109 C Y CG K NC Y+ P VQ LCP ++CC Q TL+ Sbjct: 5 CVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLK 64 Query: 110 TQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNN--LTVDGI 163 +Q + FL CP+C N LNLFCELTCSP QS F+ VT+ V V+N V + Sbjct: 65 DNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKEL 124 Query: 164 DYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRAAANLPGS 220 YY+ +F +Y +C+DV+ + N +AL + G A +W ++ + + Sbjct: 125 QYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACQATNWIEYMFNKDNGQ---A 181 Query: 221 PYTIKFWPSAPELSGMIPMNVSAYSCADG----SLGCSCGDCT 259 P+TI S + GM PMN + C + + CSC DC+ Sbjct: 182 PFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCS 224

PyMOL of 3gkh

>pdb|3QNT|A Chain A, Npc1l1 (Ntd) Structure Length = 265

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1133
3qnt_A		265	Niemann-PICK C1-like protein 1; cholesterol transp	5e-75
3gkj_A		232	Niemann-PICK C1 protein; oxysterol, cholesterol, c	4e-74
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens} Length = 265	Back alignment and structure

 Score =  248 bits (633), Expect = 5e-75
 Identities = 75/257 (29%), Positives = 106/257 (41%), Gaps = 29/257 (11%)

Query: 47  KHVEEFCAMYDICGARSD-------RKVLNCPYNIPSVKPDDLLSSKVQSLCPTI----T 95
            H   +CA YD CG   +          ++C  N P+ K        +Q +CP +     
Sbjct: 8   IHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPN 67

Query: 96  GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS 155
              CC+  Q  +L   +      L  CPAC  NF+NL C  TCSPNQSLFINVT V+++ 
Sbjct: 68  TQACCSAKQLVSLEASLSITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLG 127

Query: 156 NN--LTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI----GGGAQNFKDWFAFI 209
                 V   + +   +F +  Y+SC  V+     T A+  +    G    N + W  F 
Sbjct: 128 AGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVYGSALCNAQRWLNFQ 187

Query: 210 GRRAAANLPGSPYTIKF---WPSAPELSGMIPMNVSAYSC----ADGSLGCSCGDCTSSP 262
           G         +P  I F    P     SG+ P+N     C     D    CSC DC +S 
Sbjct: 188 G---DTGNGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCAAS- 243

Query: 263 VCSSTAPPPHKSSSCSV 279
            C + A P    S+  +
Sbjct: 244 -CPAIARPQALDSTFYL 259

PyMOL of 3qnt

>3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A* Length = 232	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1133
3qnt_A		265	Niemann-PICK C1-like protein 1; cholesterol transp	100.0
3gkj_A		232	Niemann-PICK C1 protein; oxysterol, cholesterol, c	100.0
4dx5_A		1057	Acriflavine resistance protein B; multidrug efflux	99.66
2v50_A		1052	Multidrug resistance protein MEXB; DDM, RND, membr	99.65
3aqp_A		741	Probable secdf protein-export membrane protein; tr	99.58
3ne5_A		1054	Cation efflux system protein CUSA; transmembrane h	99.56
3aqp_A		741	Probable secdf protein-export membrane protein; tr	99.45
4dx5_A		1057	Acriflavine resistance protein B; multidrug efflux	99.43
3ne5_A		1054	Cation efflux system protein CUSA; transmembrane h	99.36
2v50_A		1052	Multidrug resistance protein MEXB; DDM, RND, membr	99.32

>3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.8e-68  Score=577.23  Aligned_cols=235  Identities=32%  Similarity=0.623  Sum_probs=199.9

Q ss_pred             CccCCCCcCeeecccCCCCCC-------CCcccCCCCCCCCCCChhhHHHHHhhCCCCC---CC-CCCCHHHHHHHHHHH
Q 001173           44 GEVKHVEEFCAMYDICGARSD-------RKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT---GN-VCCTEDQFDTLRTQV  112 (1133)
Q Consensus        44 ~~~~~~~~~C~~~g~Cg~~~~-------~~~~~C~~~~~a~~~~~~~~~~l~~~Cp~~~---~~-~CC~~~Q~~~l~~~~  112 (1133)
                      .+.+|++|+|+|||+||++++       |+++||+||++|++++++++++|+++||+++   +. +|||++|+++|++||
T Consensus         5 ~~~~~~~g~C~~yg~Cg~~~~~~~~~~~~~~l~C~~n~~a~~~~~~~~~~L~~~Cp~~~~~~~~~~CC~~~Ql~~L~~nl   84 (265)
T 3qnt_A            5 YTTIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASL   84 (265)
T ss_dssp             SCCCCCTTBCSEEEEEECCTTSCTTSCCCCCEEEECCCBCEECCHHHHHHHHHHSGGGCCSSSCEESCCHHHHHHHHHHH
T ss_pred             ccCccCCCcceEecccCCCccccccccCCceecCCCCCcCCCCCHHHHHHHHHhChHhhcCCCCCCCCCHHHHHHHHHHH
Confidence            345799999999999999886       8999999999999999999999999999976   24 999999999999999


Q ss_pred             HhhhhhccCChhHHhhHhhhccccccCCCCCcceEEEeecccC--CCeeEEEEEEEEcchhchHHhhccccCCcCCCChh
Q 001173          113 QQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS--NNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTR  190 (1133)
Q Consensus       113 ~~~~~~~~~CpaC~~Nf~~~~C~~tCsP~Qs~F~~vt~~~~~~--~~~~V~~~~~~v~~~~~~~~ydSCk~v~~~~~~~~  190 (1133)
                      ++|+++|+|||||++||++|||+|||||+||+||+||++.+.+  ++..|+||+|||+++||+++|||||||+||+||++
T Consensus        85 ~~a~~il~rCPaC~~Nf~~lfC~~TCSP~QS~Fl~vt~t~~~~~~~~~~V~eldy~i~~~fa~~~YdSCKdV~~p~tn~~  164 (265)
T 3qnt_A           85 SITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATL  164 (265)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHCTTGGGTEEEEEEECCSSSSCCEEEEEEEEEEHHHHHHHHHHHTTCBCTTSSCB
T ss_pred             HHHHHHhCcChHHHHHHHHHhcCCCCCCCcccceeeEeecccCCCCcceEEEEEEEECHHHhhhHhhhhcCcccccccch
Confidence            9999999999999999999999999999999999999987643  45569999999999999999999999999999999


Q ss_pred             HHhhcCC--CCc--CHHHHHHhhhccCCCCCCCCceeEEecCCCC---CCCCcccCCCCCCCCCCC----CCCccccCCC
Q 001173          191 ALDFIGG--GAQ--NFKDWFAFIGRRAAANLPGSPYTIKFWPSAP---ELSGMIPMNVSAYSCADG----SLGCSCGDCT  259 (1133)
Q Consensus       191 am~~~gg--~a~--~~~~~l~flG~~~~~~~~~sPfqInf~~~~~---~~~~~~~~~~~~~~C~~~----~~~CsC~dC~  259 (1133)
                      |||+|||  ||+  ||++||+|||+++   +++|||||||++++.   .+.+|+|||..+++|||.    .++|||+||+
T Consensus       165 Am~l~cG~~gA~~Cn~~~wl~flG~~~---n~~sPFqInf~~~~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~  241 (265)
T 3qnt_A          165 AVGTMCGVYGSALCNAQRWLNFQGDTG---NGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCA  241 (265)
T ss_dssp             TTGGGSTTSCSSSCCHHHHHHHHTCTT---TTCCSSEEEEEEECHHHHTTSSCCCBCCCCCCTTSCCTTTCCCCCTTTCG
T ss_pred             hhhhhcCCcCcCCCCHHHHHHHhcccc---CCCCCeEEEeeccCCCccCCCCceECCCCCcCCCCCCCCCCCCEecccch
Confidence            9999998  787  9999999999985   379999999997532   125899999999999975    4699999999


Q ss_pred             CCCCCCCCCCCCCCCCCceEeecCCc
Q 001173          260 SSPVCSSTAPPPHKSSSCSVKMGSLN  285 (1133)
Q Consensus       260 ~~~sCp~~~~~~~~~~~c~~~~~~~~  285 (1133)
                      +  |||.+|++|+.+.+  |+||||+
T Consensus       242 ~--sCp~~p~~p~~~~p--~~I~gld  263 (265)
T 3qnt_A          242 A--SCPAIARPQALDST--FYLGQMP  263 (265)
T ss_dssp             G--GCCC-------------------
T ss_pred             h--hcCCCCCCCCCCCC--cEEEeee
Confidence            9  99987777666665  7777775

PyMOL of 3qnt

>3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A*	Back alignment and structure

>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...	Back alignment and structure

>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}	Back alignment and structure

>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A	Back alignment and structure

>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A	Back alignment and structure

>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A	Back alignment and structure

>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...	Back alignment and structure

>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A	Back alignment and structure

>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1133
d1iwga7		199	Multidrug efflux transporter AcrB transmembrane do	99.6
d1iwga8		222	Multidrug efflux transporter AcrB transmembrane do	99.4

>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Multidrug efflux transporter AcrB transmembrane domain
superfamily: Multidrug efflux transporter AcrB transmembrane domain
family: Multidrug efflux transporter AcrB transmembrane domain
domain: Multidrug efflux transporter AcrB transmembrane domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=1.8e-15  Score=157.67  Aligned_cols=192  Identities=18%  Similarity=0.218  Sum_probs=149.9

Q ss_pred             HHHHHHHHHHHHHHhhcccccCCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHhhcCCCCCcccccccc
Q 001173          586 KAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSK  665 (1133)
Q Consensus       586 ~a~~WE~~f~~~v~~~~~~~~~~~~l~v~f~~e~sl~dEl~~~s~~d~~~l~is~llmf~y~~~~l~~~~~~~~~~v~Sk  665 (1133)
                      .+.+|-.+....+..-+.    .-.+.+.+....-+++.+++    -...+.++.+++++.+.+.+|+++          
T Consensus         3 ~~~~~~~~~~~~~~~~~~----~~~l~v~~~~~~fi~~si~~----~~~~l~ia~~lv~~vl~l~~rs~~----------   64 (199)
T d1iwga7           3 PIFAWVIAIIIMLAGGLA----ILKLPVAQYPTPFVKISIHE----VVKTLVEAIILVFLVMYLFLQNFR----------   64 (199)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HTTSCCCSSCCHHHHHHHHH----HHHHHHHHHHHHHHHHHTTCCCTT----------
T ss_pred             hHHHHHHHHHHHhhCccc----cceeEEeecCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhh----------
Confidence            467888777655443221    01122223332334433333    234567777777777777666653          


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhcCeeecchhhhHHHHHhhhccccceEehHHHHHHH--hcCCCHHHHHHHHHHHHhH
Q 001173          666 VLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGP  743 (1133)
Q Consensus       666 ~~lgl~gvl~v~lsv~~s~Gl~~~~Gi~~~~i~~~viPfLvLgIGvD~~f~l~~~~~~~--~~~~~~~e~i~~al~~~g~  743 (1133)
                        .++..++.+.+++++++|++.++|++++. .+.+.+.+++|+++||.+|++++++++  +++.+++|++.++++++|.
T Consensus        65 --~~li~~~~i~~~i~~~~~~m~~~g~~l~~-~s~~~~~i~igi~vd~~i~i~~~~~~~~~~~g~~~~eAi~~a~~~~g~  141 (199)
T d1iwga7          65 --ATLIPTIAVPVVLLGTFAVLAAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQG  141 (199)
T ss_dssp             --TTTHHHHHHHHHHHHHHHHHHTTTCCSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSHHHHHHGGGTHHH
T ss_pred             --hhheeccccchhhHHHHHHhhcCCCchHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcCCCHHHHHHHHHhHhhh
Confidence              26778899999999999999999999997 678888999999999999999887654  4678999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccCCchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 001173          744 SITLASLSEVLAFAVGSFIPMPA---CRVFSMFAALAVLLDFLLQITAFVALIVFDFL  798 (1133)
Q Consensus       744 si~ltslt~~~~F~~~~~s~~p~---vr~F~l~aaiav~~~~l~~lt~fpalL~l~~r  798 (1133)
                      +++.+++|++++|+.+.+++.+.   .+.||+..+++++++++..+|++||++++..|
T Consensus       142 ~i~~s~lTt~~~f~~l~~~~~~~~~~~~~~g~~i~~gv~~s~i~al~llPall~~~~K  199 (199)
T d1iwga7         142 ALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLK  199 (199)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999998887654   89999999999999999999999999997653

PyMOL of d1iwga7

>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure