Citrus Sinensis ID: 001204


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120----
MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHccccccHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccc
ccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEcHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccHHccccccccccccccccccccccccHHcccccHccHHcHHcccccHHHHccHHHHHHHHccccccHHHHcccccHHHHHHHHHcccccccHHHccccHHHHHHHHccHHHHccccccHHHHHHHcccHHHHHccccHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHcccHccccccccccHccHHHHHcHccHHHHHcccccccHHHHHcHcHHHHccccHHHHHHHHHHcccHHHHcccHHcHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccHHHccccccccHHHHcHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHcccccccHccHHcccccccccEEEccccc
medddefgdlytdvlrplsaasqsphqtspaaptslhrpidldlnlksndhpasapnstpphtlaptpplpsfhappradtdgeftdndndvkvKFDIEeanngisndddvpgieipgisqnsvensehqnrnegeageeaeddwesdsedDLQIVLnednhrpmlidggggdddddedgdplvIVADadasnhqglmveeqewggddapaqmgeggaekkegtgerangAAASAATAAAAAKIGysnhfayhnpyhsqfkyvrpgaapipgsatavaaggpgqvrplvnmgpaagrgrgdwrpagmktappmqkgfhpgfgmsasgvnmagrgleftlpshktifevdidgfeekpwkypgvditdffnfglneESWKDYCKQLEQHRLETTMQSKIRVyesgrdqptgraiqveggsgerlpsidtrpprirdsdAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdteyFDGFREAYDSRNRElvrheapfmnvahdnipegngllpfppeaplryrpgsrgptpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdnqdeesvesmegkhsplsspvivRDARELSVEHKDAVhdelvlgdgssavekeetnavttsdsrkdgkalyspktkkinsqveqpelqefdeeedSRAArssenskarsgssrdnkkwregDEEVMQDRRstrmgsmkkhpeeneqsFRRKDREGRQEMERNRMVAIGregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriEDTRKREREHLDEIGarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslKSRYEMVDDYISkrrkddeyvrrdhaekdeilhghrdltsrrkrerDDILDQRRREDQQRIREnfddhhpvrhkdenwsqreRGERQREredwhrlkpheeiLSKREreegrgavrsgrssedrawvgharvkdeykgsdkeyqvkDTVRHSEQLKrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghvsemvcsidtra
MEDDDEFGDLYTDVLRPlsaasqsphqtspaaptslhRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEAnngisndddvpgIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLettmqskirvyesgrdqptgraiqveggsgerlpsidtrpprirdSDAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPtpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdNQDEESVesmegkhsplsspVIVRDARELSVEHKDAVhdelvlgdgssavekeetnavttsdsrkdgkalyspktkkinsqveqpelqefdeeedsraarssenskarsgssrdnkkwregdeevmqdrrstrmgsmkkhpeeneqsfrrkdregrqeMERNRMvaigregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriedtrkrerehldeigarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslksryemvddyiskrrkddeyvrrdhaekdeilhghrdltsrrkrerddildqrrredqqrirenfddhhpvrhkdenwsqrergerqreredwhrlkpheeilskrereegrgavrsgrssedrawvgharvkdeykgsdkeyqvkdtvrhseqlkrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghvsemvcsidtra
MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNStpphtlaptpplpSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNegeageeaeddwesdseddLQIVLNEDNHRPMLIdggggdddddedgdPLVIVADADASNHQGLMVEEQEWGGDDAPAQMgeggaekkegtgeRangaaasaataaaaaKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVeqpelqefdeeedsraarssensKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKrerddildqrrredqqrireNFDDHHPVRHKDENWSqrergerqrereDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA
**********************************************************************************************************************************************************************************************************************************************AAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPI*********************************************************VNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL***********************************************AIIEIVC*****************************************YFDGFR****************FM***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
***DDEFGDLYTDVLR*****************************************************************************************************************************************QIVLN*********************GDPLVIVAD*******************************************************************YHSQFKY***********************************************************************GLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQ********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
MEDDDEFGDLYTDVLRPLS***************SLHRPIDLDLNLKSND***********HTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNS****************************DLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQM***************************AAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSV**************LPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG*************************************************SSPVIVRDARELSVEHKDAVHDELVLGDGSSAV************************************************************************************************************MERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGF*********************SRKNRIEDTRKREREHLDEIG************IDRDEYLHSRKQLDNGSYR*****************LKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKD****************DWHRLKPHEEILSKR******************AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRR*************REDVYARGNQI***********************************************HNSLVAS***********SEMVCSIDTRA
*****EFGDLYTDVLRPLS***********************************************************************DVKVKFDIEEANNGISNDDDVPGI**********************************SEDDLQIVLNED*******************GDPLVIVADADASNHQGLMVEEQEW*********************************AAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMG******RGDWRPAGM*T*********PGFGMSASGV*MAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQD******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1124 2.2.26 [Sep-21-2011]
Q5XJD3570 Pre-mRNA 3'-end-processin no no 0.059 0.117 0.394 4e-11
Q9D824581 Pre-mRNA 3'-end-processin yes no 0.066 0.129 0.376 7e-11
Q5U317536 Pre-mRNA 3'-end-processin yes no 0.066 0.139 0.376 9e-11
Q5RAA7588 Pre-mRNA 3'-end-processin yes no 0.079 0.151 0.343 1e-10
Q6UN15594 Pre-mRNA 3'-end-processin no no 0.079 0.149 0.343 1e-10
Q09801344 Pre-mRNA polyadenylation yes no 0.041 0.136 0.468 2e-09
Q6BGR9328 Pre-mRNA polyadenylation yes no 0.058 0.201 0.363 6e-08
Q6C784221 Pre-mRNA polyadenylation yes no 0.048 0.244 0.462 1e-07
Q6FJ55327 Pre-mRNA polyadenylation yes no 0.075 0.259 0.340 1e-07
Q6CPC3295 Pre-mRNA polyadenylation yes no 0.124 0.474 0.246 8e-07
>sp|Q5XJD3|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1 PE=1 SV=1 Back     alignment and function desciption
 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 320 GFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWK 379
           G G    GV++   G    +P    + E D++ FEEKPW+ PG D++D+FN+G NE++WK
Sbjct: 140 GAGAKVKGVDLEAPGSINGVP----VLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWK 195

Query: 380 DYCKQLEQHRL 390
            YC++ ++ R+
Sbjct: 196 AYCEKQKRLRM 206




Involved in mRNA processing.
Danio rerio (taxid: 7955)
>sp|Q9D824|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q5U317|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus GN=Fip1l1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RAA7|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1 PE=2 SV=1 Back     alignment and function description
>sp|Q6UN15|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1 PE=1 SV=1 Back     alignment and function description
>sp|Q09801|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1 Back     alignment and function description
>sp|Q6BGR9|FIP1_DEBHA Pre-mRNA polyadenylation factor FIP1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=FIP1 PE=3 SV=2 Back     alignment and function description
>sp|Q6C784|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FIP1 PE=3 SV=1 Back     alignment and function description
>sp|Q6FJ55|FIP1_CANGA Pre-mRNA polyadenylation factor FIP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FIP1 PE=3 SV=1 Back     alignment and function description
>sp|Q6CPC3|FIP1_KLULA Pre-mRNA polyadenylation factor FIP1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=FIP1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1124
359484826 1417 PREDICTED: uncharacterized protein LOC10 0.895 0.709 0.590 0.0
255565011 1365 ATP binding protein, putative [Ricinus c 0.960 0.791 0.541 0.0
224142409 1433 predicted protein [Populus trichocarpa] 0.938 0.736 0.514 0.0
224091696 1336 predicted protein [Populus trichocarpa] 0.953 0.802 0.532 0.0
449457917 1399 PREDICTED: uncharacterized protein LOC10 0.959 0.771 0.494 0.0
147863604 1798 hypothetical protein VITISV_010335 [Viti 0.683 0.427 0.583 0.0
356533011 1316 PREDICTED: uncharacterized protein LOC10 0.922 0.787 0.483 0.0
356554872 1302 PREDICTED: uncharacterized protein LOC10 0.911 0.787 0.478 0.0
297743639824 unnamed protein product [Vitis vinifera] 0.528 0.720 0.573 0.0
4495218861174 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.617 0.591 0.530 1e-172
>gi|359484826|ref|XP_002276238.2| PREDICTED: uncharacterized protein LOC100251960 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1072 bits (2772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1116 (59%), Positives = 780/1116 (69%), Gaps = 110/1116 (9%)

Query: 82   DGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENS-----EHQNRNEGE 136
            D +F + D    V FDIEE + G + D  +  I IPG+S      S     E QNR +  
Sbjct: 157  DVDFMEKD----VNFDIEEVD-GEAGDVGLDPI-IPGLSAAPAIPSLDAPVEPQNREKTN 210

Query: 137  AGEEAEDDW-------ESDSEDDLQIVLNEDNHRPMLIDGGG--GDDDDDEDGDPLVIVA 187
                A DD        +SDSEDDLQIVLN++NH PM  +  G  G DD+DEDGDPLVIVA
Sbjct: 211  V--VARDDASVQGDDWDSDSEDDLQIVLNDNNHGPMAAERNGVMGSDDEDEDGDPLVIVA 268

Query: 188  DADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAA--KIG 245
            D D ++     +EEQEWG D A               GER  GA A+    A A   KIG
Sbjct: 269  DGDQTHPP---LEEQEWGEDTAV-------------DGERKEGADAAKVNGAIAGPPKIG 312

Query: 246  YSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPA 305
            YS+H  YH P+HSQFKYVRPGAAPIPG+A  V  G PGQVRPL N+GP  GRGRGDWRPA
Sbjct: 313  YSSH-GYH-PFHSQFKYVRPGAAPIPGAAAVVPGGTPGQVRPLANIGPVPGRGRGDWRPA 370

Query: 306  GMKTAPPMQKGFHPGFGMSASGVNMAGRG----LEFTLPSHKTIFEVDIDGFEEKPWKYP 361
            G+K APPMQK FH GFG  A G NMAGRG    LEFTLPSHKTIF+VDID FEEKPW++P
Sbjct: 371  GIKNAPPMQKNFHSGFGAPAWGGNMAGRGFGGGLEFTLPSHKTIFDVDIDSFEEKPWRHP 430

Query: 362  GVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQ-------------- 407
            GVDI+DFFNFG NEESWK YCKQLEQ RLE TMQ+KIRVYESGR +              
Sbjct: 431  GVDISDFFNFGFNEESWKQYCKQLEQLRLEATMQTKIRVYESGRTEQEYDPDLPPELAAA 490

Query: 408  ----------------------------------PTGRAIQVEGGSGERLPSIDTRPPRI 433
                                              PTGRAIQVEGG GERLPS+DTRPPR+
Sbjct: 491  VGIHDVSAENGNLGRADVGPSDLAKASARVRPPIPTGRAIQVEGGCGERLPSVDTRPPRV 550

Query: 434  RDSDAIIEIVCQDSVDDDSSAGNGDR---DNDLPREDRRGENDGAEDEMGPVDTEYFDGF 490
            RDSDAIIEI  Q S+DDDS  GNG     DNDLPRED R  N+  ED+    DTEYFD F
Sbjct: 551  RDSDAIIEITLQGSLDDDSPTGNGAPEPPDNDLPREDLRVGNE-VEDDAAQEDTEYFDSF 609

Query: 491  REAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG 550
               Y  RNRELV   APFMN   D++P G+G+LPFPPEAP++YRPGSRG  P +PG N G
Sbjct: 610  STTYSGRNRELVGRSAPFMNSLRDDMPGGDGILPFPPEAPVQYRPGSRGQDPVHPGGNFG 669

Query: 551  TSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARE 610
            T HE R        +SP MTP QS +  +F D+Q EESVESM+ K    SSPV V   RE
Sbjct: 670  TPHEDR-----AHGKSPHMTPIQSTRDNRFLDSQKEESVESMDVK-GMTSSPVRVAPPRE 723

Query: 611  LSVEHKDAVHDELVLGDGSSAVEKEE--TNAVTTSDSRKDGKALYSPKTKKINSQVEQPE 668
             SVE KDA+   +VL DG+S +E+EE  +N +T++D+ KD   +   K +K++S+VEQP 
Sbjct: 724  PSVEKKDALDGGIVLADGTSGMEREELTSNTMTSTDALKDENLIPFGKKQKLSSRVEQPP 783

Query: 669  LQEFDEEEDSRAARSSENSKARSGSSRDNKKWREG-DEEVMQDRRSTRMGSMKKHPEENE 727
             QE D +ED +A RSSENSKARS SSRD +KW +G +EEV++D  S RMG+ K+H +E+E
Sbjct: 784  PQELDGDEDLKATRSSENSKARSESSRDLQKWHDGGEEEVIEDGSSVRMGNSKRHLDEDE 843

Query: 728  QSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGV 787
            QSFRRKDR+GRQEMER+RMV  GRE ++P RD+D    H   +K + FDRRKER++SDG 
Sbjct: 844  QSFRRKDRDGRQEMERSRMVVKGREDTYPHRDWDSIPNHHSHVKTDSFDRRKERDSSDGG 903

Query: 788  WQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSY 847
            WQRR+D+ + R+ R ED RK+ER   DE+G+RHR K RESER ++DE LHSRK LDNGS+
Sbjct: 904  WQRRDDDLHGRRIRPEDARKQERG--DEMGSRHRSKVRESERSNKDELLHSRKLLDNGSW 961

Query: 848  RPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSR 907
            R H DKD  SRHRERDD+LKSRY  +DD   KRRKD+EY+RRDHAEK+E LH HR+  SR
Sbjct: 962  RGHQDKDMGSRHRERDDNLKSRYGNLDDLHGKRRKDEEYLRRDHAEKEETLHSHRESASR 1021

Query: 908  RKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLK-PHE 966
            RKRERDD+LDQR+R+DQ RIR+N DDHH VRHKDE W QRERGERQRERE+WHRL+ PHE
Sbjct: 1022 RKRERDDVLDQRKRDDQPRIRDNLDDHHSVRHKDEGWMQRERGERQREREEWHRLRQPHE 1081

Query: 967  EILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRER 1026
            E LSKREREEGRGAVRSGR +ED+AWV HAR KDEYKGSDK+YQ KDT RHSEQ KRR+R
Sbjct: 1082 ENLSKREREEGRGAVRSGRGAEDKAWVSHARGKDEYKGSDKDYQYKDTGRHSEQPKRRDR 1141

Query: 1027 IEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSR 1086
            +EDES   HRGREDVYARG+Q SNE+R+SRQERS  RND S+N SD+ RV++KKHKE++R
Sbjct: 1142 VEDESFSHHRGREDVYARGSQFSNEERRSRQERSSARNDHSSNASDHQRVHDKKHKENTR 1201

Query: 1087 KNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDT 1122
            KN+ESE  + ++L  SKRNQED +   +E V S  T
Sbjct: 1202 KNKESEGADISTLGPSKRNQEDHNSQRNETVISKGT 1237




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255565011|ref|XP_002523498.1| ATP binding protein, putative [Ricinus communis] gi|223537205|gb|EEF38837.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224142409|ref|XP_002324551.1| predicted protein [Populus trichocarpa] gi|222865985|gb|EEF03116.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224091696|ref|XP_002309330.1| predicted protein [Populus trichocarpa] gi|222855306|gb|EEE92853.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449457917|ref|XP_004146694.1| PREDICTED: uncharacterized protein LOC101212971 [Cucumis sativus] Back     alignment and taxonomy information
>gi|147863604|emb|CAN81922.1| hypothetical protein VITISV_010335 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356533011|ref|XP_003535062.1| PREDICTED: uncharacterized protein LOC100803769 [Glycine max] Back     alignment and taxonomy information
>gi|356554872|ref|XP_003545766.1| PREDICTED: uncharacterized protein LOC100799266 [Glycine max] Back     alignment and taxonomy information
>gi|297743639|emb|CBI36522.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449521886|ref|XP_004167960.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227301, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1124
TAIR|locus:21558061196 FIP1[V] "homolog of yeast FIP1 0.335 0.315 0.450 1.1e-121
DICTYBASE|DDB_G0288797560 fip1l1 "cleavage and polyadeny 0.118 0.237 0.354 4e-21
UNIPROTKB|E1BWP4580 Gga.5511 "Uncharacterized prot 0.196 0.381 0.267 1.2e-15
FB|FBgn0031273826 CG2839 [Drosophila melanogaste 0.367 0.5 0.220 2.6e-15
MGI|MGI:1914149581 Fip1l1 "FIP1 like 1 (S. cerevi 0.186 0.361 0.297 2.7e-15
FB|FBgn0037255701 Fip1 [Drosophila melanogaster 0.071 0.114 0.385 4.1e-14
RGD|1309336536 Fip1l1 "FIP1 like 1 (S. cerevi 0.070 0.147 0.4 2.4e-13
UNIPROTKB|Q5U317536 Fip1l1 "Pre-mRNA 3'-end-proces 0.070 0.147 0.4 2.4e-13
ZFIN|ZDB-GENE-041010-138570 fip1l1b "FIP1 like 1b (S. cere 0.059 0.117 0.394 4.8e-13
UNIPROTKB|Q6UN15594 FIP1L1 "Pre-mRNA 3'-end-proces 0.079 0.149 0.363 5.5e-13
TAIR|locus:2155806 FIP1[V] "homolog of yeast FIP1 [V]" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 767 (275.1 bits), Expect = 1.1e-121, Sum P(2) = 1.1e-121
 Identities = 193/428 (45%), Positives = 228/428 (53%)

Query:     1 MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSX- 59
             ME+DDEFGDLY+DVL+P       P    P  P   HR IDL  NL+S D   S PNS  
Sbjct:     1 MEEDDEFGDLYSDVLQPFQ-----PPVVLPPPPPLPHRSIDL--NLRSQDQDVSEPNSAP 53

Query:    60 -XXXXXXXXXXXXSFHAPPRADTDGEFTDNDNDVKVKFDIEE--ANN-----GISNDDDV 111
                          +  A  +A  DG   D D    + FDIEE  A++     G+     +
Sbjct:    54 ISRVSDNDAVKLSTQDATRQAIVDGGGDDKD----MSFDIEEPDADSTPTIPGLFVTGAL 109

Query:   112 PGIEIP-GISQ--NSVENSEHQNRNXXXXXXXXXXXXXXXXXXXLQIVLNEDNHRPMLIX 168
             PG+    G+SQ    +E       +                   LQIVLN D+ R ++I 
Sbjct:   110 PGLATDRGVSQVTTRIEQQVGGGGDGGYGGQGEGDDWDSDSEDDLQIVLN-DSSRNVMIG 168

Query:   169 XXXXXXXXXXXXX--------PLVIVADADASNHQGLMVEEQEWGGDDAPAQMXXXXXXX 220
                                  PLVIVAD D +      +EEQ WG D             
Sbjct:   169 GADRRSRMGDNEDDDDEDDEDPLVIVADTDPNQP----MEEQMWGEDGLQG-------IE 217

Query:   221 XXXXXXRXXXXXXXXXXXXXXXKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAG 280
                                   K GYS+H  YH P+HSQFKYVRPGAAPIPG A +V   
Sbjct:   218 GDGKDGGEAGKGSGPGGATGPPKAGYSSH-GYH-PFHSQFKYVRPGAAPIPGGAASVGGP 275

Query:   281 GPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLP 340
               GQVRP  N+GP AGRGRGDWRP GM+ A   QKGFH  +G      N AGRGL+FTLP
Sbjct:   276 SSGQVRPPANLGPMAGRGRGDWRPLGMRNASAAQKGFHQPWGS-----NTAGRGLDFTLP 330

Query:   341 SHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRV 400
             SHKTIFEVDID FEEKPW+YPGV++TD+FNFGLNEESWKDYCKQL+QHR++TTMQS+IRV
Sbjct:   331 SHKTIFEVDIDSFEEKPWRYPGVEMTDYFNFGLNEESWKDYCKQLDQHRIQTTMQSRIRV 390

Query:   401 YESGR-DQ 407
             YESGR DQ
Sbjct:   391 YESGRTDQ 398


GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0003723 "RNA binding" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0006397 "mRNA processing" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
DICTYBASE|DDB_G0288797 fip1l1 "cleavage and polyadenylation specificity factor FIP1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWP4 Gga.5511 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
FB|FBgn0031273 CG2839 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1914149 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0037255 Fip1 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|1309336 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q5U317 Fip1l1 "Pre-mRNA 3'-end-processing factor FIP1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041010-138 fip1l1b "FIP1 like 1b (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q6UN15 FIP1L1 "Pre-mRNA 3'-end-processing factor FIP1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_XVIII000956
hypothetical protein (1433 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1124
pfam0518245 pfam05182, Fip1, Fip1 motif 6e-20
COG5213266 COG5213, FIP1, Polyadenylation factor I complex, s 4e-08
PRK12678 672 PRK12678, PRK12678, transcription termination fact 2e-04
TIGR00934 800 TIGR00934, 2a38euk, potassium uptake protein, Trk 4e-04
PRK13875440 PRK13875, PRK13875, conjugal transfer protein TrbL 0.003
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
>gnl|CDD|191218 pfam05182, Fip1, Fip1 motif Back     alignment and domain information
 Score = 83.8 bits (208), Expect = 6e-20
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390
           F+ D++ FEEKPW+ PG DI+D+FN+G NEE+WK YCK+ E+ RL
Sbjct: 1   FDYDLESFEEKPWRKPGADISDYFNYGFNEETWKLYCKKQERLRL 45


This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor. Length = 45

>gnl|CDD|227538 COG5213, FIP1, Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family Back     alignment and domain information
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1124
KOG1049538 consensus Polyadenylation factor I complex, subuni 100.0
PF0518245 Fip1: Fip1 motif; InterPro: IPR007854 This short m 99.9
COG5213266 FIP1 Polyadenylation factor I complex, subunit FIP 99.84
KOG09211282 consensus Dosage compensation complex, subunit MLE 85.61
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification] Back     alignment and domain information
Probab=100.00  E-value=4.4e-45  Score=403.17  Aligned_cols=500  Identities=21%  Similarity=0.248  Sum_probs=339.3

Q ss_pred             ccCCcccCcccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 001204          136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE  215 (1124)
Q Consensus       136 ~~~~~~~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~  215 (1124)
                      .+.++.++.|+.|.|+.+++|++...-+.|+..-   |-+|.+|++.++||++.+.+    ..+++++|....  ..-|.
T Consensus        24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~   94 (538)
T KOG1049|consen   24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE   94 (538)
T ss_pred             ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence            4566778899999999999999999876554211   12555667778888877766    788999998830  00111


Q ss_pred             CCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 001204          216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA  295 (1124)
Q Consensus       216 ~gaerk~ggge~~~~~~~~~~~a~~~~kiGys~~g~~~hp~HsqfKYVRPgaa~~pga~~~~~~g~pgqvrpp~~~~~~a  295 (1124)
                      .+        .++      ...++                     ||+.++.+..+++...+...+.+|+          
T Consensus        95 ~~--------~~~------~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~----------  129 (538)
T KOG1049|consen   95 DD--------VAV------DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT----------  129 (538)
T ss_pred             cc--------ccc------ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence            11        110      00000                     8999999999998888877777766          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 001204          296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE  375 (1124)
Q Consensus       296 GrgrGdWrp~g~k~~~~~~k~fh~G~g~~~~G~~~agrG~eF~lp~~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE  375 (1124)
                                   .++..+|+++.     +|.-.+.|..      ...+||+||||.|++||||+|||||||||||||||
T Consensus       130 -------------~~~a~~kg~~~-----~~dld~~g~i------n~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE  185 (538)
T KOG1049|consen  130 -------------NKSAAPKGKMS-----QVDLDTPGTI------NGVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE  185 (538)
T ss_pred             -------------ccccccccCcc-----cccccCCccc------CCccceeecHHHhccCcccCCCccchhhhccccCH
Confidence                         11223555553     4443333333      22389999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhchhhhhhhhccCC---CCCCCceeeecCCCCCCCCCCCCCCCCcCCCC-CceEEeeccCccCC
Q 001204          376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD  451 (1124)
Q Consensus       376 ~TWk~Yc~kq~qlR~E~tmqsKI~~yEsg~---~lptGRaIQVEgg~geR~PS~D~RpPR~rDSD-~IIeIv~qdS~Dd~  451 (1124)
                      +||++||++|++||.+|++...+.+++..+   .+++.-.||..+    -.|.+       .... +-..++|.++..- 
T Consensus       186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g----~~p~~-------~~ts~~~~~~~~~~~~~~-  253 (538)
T KOG1049|consen  186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPG----PGPVG-------NLTSRTSVGARGIDSNQR-  253 (538)
T ss_pred             HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCC----CCCcc-------ccCCccccccccCCCCCC-
Confidence            999999999999999999988888877654   344444444332    11111       1110 0111222211110 


Q ss_pred             CCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccccccccccchhhhhccccccccccccCCCCCCCCC-------CC
Q 001204          452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGL-------LP  524 (1124)
Q Consensus       452 ~s~~n~~q~n~~~r~d~r~~~~~~e~~M~~~~~ey~~gfpq~y~~r~~~~~g~~~p~mns~~~n~pegd~~-------lp  524 (1124)
                           .  .+.                   +.+.+...-...+.+.     ...-|+.|+-..++--|.+.       .|
T Consensus       254 -----~--~~~-------------------~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~r~g~~~~~~~~~~~p  302 (538)
T KOG1049|consen  254 -----P--AND-------------------VPPSGGGRPLMSVTGS-----RPAEPSSNSQAPGARSGSGEPSGMSEPPP  302 (538)
T ss_pred             -----C--CCC-------------------CCCCCCCcccccccCC-----cCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence                 0  000                   0000100000000000     11223333322233333322       23


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 001204          525 FPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV  603 (1124)
Q Consensus       525 ~~~~~p~~~~~gsrg~~p~~~g~~~gtp~e~r~~~gr~~~~Sp~~tP~Qs~~~krf~Dsq~EEs~ESmdgk~s~~-sSPv  603 (1124)
                      +-...|.++.-..-|..++ |-.++-          .+..+.++++|.|+...+--|..+.|+...|.++..|.. ..|.
T Consensus       303 ~~~a~p~~~~~~~~~~~~s-p~~~~t----------~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g  371 (538)
T KOG1049|consen  303 SMEAGPSQKERLPPGPEES-PPSNET----------APGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG  371 (538)
T ss_pred             CcCCCCChhhccCCCcCCC-CCcCCC----------CCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence            3333444444444443333 112222          245577888999988889999999999999999988887 7888


Q ss_pred             cccccccccccccccccccccccCCCccccccccccccccccccCCCcccCcccccccccccCcccccCChhHHHHHhhc
Q 001204          604 IVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARS  683 (1124)
Q Consensus       604 ~v~dare~S~E~kD~~d~e~~~adgss~~~~dE~n~~T~~D~~kd~~l~hs~kkqK~~S~veQp~~qe~d~~~dska~rs  683 (1124)
                      .|+.+.. ++--.+.....+  .++.       +                 .-..++.+...+...+. ++..-++.+|.
T Consensus       372 ~~~~pp~-~~h~~~~~~~s~--~~~~-------~-----------------~~~~~m~~~~~~~~~~~-r~~~rs~~~r~  423 (538)
T KOG1049|consen  372 EVRPPPQ-SAHLAAPEGPSP--KRGE-------S-----------------SPDMYMRHRSPHSRSRD-RDNGRSGYRRR  423 (538)
T ss_pred             ccCCCcc-ccccccCCCCCC--Cccc-------c-----------------CccccccCCCccccccc-ccccccchhhh
Confidence            8888766 555544311122  1111       1                 13356777777888888 77888899999


Q ss_pred             ccccccccCCcccchhhccCcccccccccccccCCcCCCCCccchhhhhhhhhhhHHHHhhhhhhc-ccCCCCCCCCCCC
Q 001204          684 SENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDP  762 (1124)
Q Consensus       684 SenSkaRSgSskD~qk~~e~eEeV~qd~~S~r~g~~rrh~de~e~~~rrkdrd~r~emER~r~~~~-gRe~syp~rd~dp  762 (1124)
                      |+.+++++++.||.|.    +|-|++++.|.+.-++++|+..+....+||.+|.-.||||.|..+. +++..-+||-||-
T Consensus       424 ~~~~s~~~~~~rd~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~  499 (538)
T KOG1049|consen  424 SRSRSPTRDPGRDKKP----GELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDE  499 (538)
T ss_pred             hhcccCCCCcccCCCC----CcccccccccChhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhh
Confidence            9999999999999999    9999999999999999999999999999999999999999999998 8899999999999


Q ss_pred             CCcccccCCCCCccccccccCCcccccccccCcccccc
Q 001204          763 SLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKN  800 (1124)
Q Consensus       763 ~~~~~~~~~~e~~Dr~keren~d~~Wqrredd~~~rr~  800 (1124)
                      +.... ..+++.|++.|+++.....|..+....++++.
T Consensus       500 ~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~~~e~~~~  536 (538)
T KOG1049|consen  500 NEESS-SGRREDHSKSKRSGTHLEEYSSRSSFDESQRN  536 (538)
T ss_pred             ccccc-cccchhcchhhhccccchhhccCCCccccccc
Confidence            87766 67889999999999999999999999998875



>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase [] Back     alignment and domain information
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification] Back     alignment and domain information
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1124
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.4 bits (109), Expect = 6e-05
 Identities = 85/592 (14%), Positives = 162/592 (27%), Gaps = 200/592 (33%)

Query: 579  KFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHD-----ELVLGDGSSAVE 633
             F DN D + V+ M    S LS      +   + +  KDAV         +L      V+
Sbjct: 28   AFVDNFDCKDVQDMP--KSILSK----EEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 634  KEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGS 693
            K     V     R + K L SP    I ++  QP +       + R    ++N      +
Sbjct: 81   K----FVEEVL-RINYKFLMSP----IKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYN 130

Query: 694  -SRDNKKW--REGDEEVMQDRRSTR-----MGSMKK----------HPEENEQSFR---- 731
             SR       R+    +++ R +       +    K          +  + +  F+    
Sbjct: 131  VSRLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 732  --RKDREGRQEMER-NRMVAIGREGSHPRRDFDPSL---THDMQMKPEGFDRRKERENS- 784
              +        +E   +++         R D   ++    H +Q +     + K  EN  
Sbjct: 188  NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 785  ---DGVWQRREDEPY---------SRKNRIED------TRKREREHL------DE----- 815
                 V   +    +         +R  ++ D      T     +H       DE     
Sbjct: 248  LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 816  -------------------------IGARHRGKARESERIDR-DEYLH------------ 837
                                     I    R      + +   D + H            
Sbjct: 308  LKYLDCRPQDLPREVLTTNPRRLSIIAESIR------DGLATWDNWKHVNCDKLTTIIES 361

Query: 838  SRKQLDNGSYRPHYD------KDA------------SSRHRERDDSLKS--RYEMVDDYI 877
            S   L+   YR  +D        A                 +    +    +Y +V+   
Sbjct: 362  SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--- 418

Query: 878  SKRRKDDEYVRRDHAEKDEILHG-HRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHP 936
             K+ K+              +   + +L  + K E +  L  R   D   I + FD    
Sbjct: 419  -KQPKESTIS----------IPSIYLEL--KVKLENEYAL-HRSIVDHYNIPKTFDSDDL 464

Query: 937  VRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSE------DR 990
            +    + +               H +  H   L   E  E        R +       D 
Sbjct: 465  IPPYLDQYFY------------SH-IGHH---LKNIEHPE--------RMTLFRMVFLDF 500

Query: 991  AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKR-RERIEDESRPPHRGREDV 1041
             ++   +++ +    +    + +T+   +QLK  +  I D      R    +
Sbjct: 501  RFLE-QKIRHDSTAWNASGSILNTL---QQLKFYKPYICDNDPKYERLVNAI 548


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00