Citrus Sinensis ID: 001204

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120----

MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccHHHHHHHHHccccccccccccccccccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccHHHHHHccccccHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccccccccc

ccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccEEEEEcHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccEEcccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccHHccccccccccccccccccccccccHHcccccHccHHcHHcccccHHHHccHHHHHHHHccccccHHHHcccccHHHHHHHHHcccccccHHHccccHHHHHHHHccHHHHccccccHHHHHHHcccHHHHHccccHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHcccHccccccccccHccHHHHHcHccHHHHHcccccccHHHHHcHcHHHHccccHHHHHHHHHHcccHHHHcccHHcHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccHHHccccccccHHHHcHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHcccccccHccHHcccccccccEEEccccc

medddefgdlytdvlrplsaasqsphqtspaaptslhrpidldlnlksndhpasapnstpphtlaptpplpsfhappradtdgeftdndndvkvKFDIEeanngisndddvpgieipgisqnsvensehqnrnegeageeaeddwesdsedDLQIVLnednhrpmlidggggdddddedgdplvIVADadasnhqglmveeqewggddapaqmgeggaekkegtgerangAAASAATAAAAAKIGysnhfayhnpyhsqfkyvrpgaapipgsatavaaggpgqvrplvnmgpaagrgrgdwrpagmktappmqkgfhpgfgmsasgvnmagrgleftlpshktifevdidgfeekpwkypgvditdffnfglneESWKDYCKQLEQHRLETTMQSKIRVyesgrdqptgraiqveggsgerlpsidtrpprirdsdAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdteyFDGFREAYDSRNRElvrheapfmnvahdnipegngllpfppeaplryrpgsrgptpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdnqdeesvesmegkhsplsspvivRDARELSVEHKDAVhdelvlgdgssavekeetnavttsdsrkdgkalyspktkkinsqveqpelqefdeeedSRAArssenskarsgssrdnkkwregDEEVMQDRRstrmgsmkkhpeeneqsFRRKDREGRQEMERNRMVAIGregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriEDTRKREREHLDEIGarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslKSRYEMVDDYISkrrkddeyvrrdhaekdeilhghrdltsrrkrerDDILDQRRREDQQRIREnfddhhpvrhkdenwsqreRGERQREredwhrlkpheeiLSKREreegrgavrsgrssedrawvgharvkdeykgsdkeyqvkDTVRHSEQLKrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghvsemvcsidtra

MEDDDEFGDLYTDVLRPlsaasqsphqtspaaptslhRPIDLDLNLKSNDHPASAPNSTPPHTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEAnngisndddvpgIEIPGISQNSVENSEHQNRNEGEAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLettmqskirvyesgrdqptgraiqveggsgerlpsidtrpprirdSDAIIEIVCqdsvdddssagngdrdndlpredrrgendgaedemgpvdTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPtpkypgenigtsheqrrrpgrtgdrsprmtpsqspqirkfhdNQDEESVesmegkhsplsspVIVRDARELSVEHKDAVhdelvlgdgssavekeetnavttsdsrkdgkalyspktkkinsqveqpelqefdeeedsraarssenskarsgssrdnkkwregdeevmqdrrstrmgsmkkhpeeneqsfrrkdregrqeMERNRMvaigregshprrdfdpslthdmqmkpegfdrrkerensdgvwqrredepysrknriedtrkrerehldeigarhrgkareseridrdeylhsrkqldngsyrphydkdassrhrerddslksryemvddyiskrrkddeyvrrdhaekdeilhghrdltsrrkrerddildqrrredqqrirenfddhhpvrhkdenwsqrergerqreredwhrlkpheeilskrereegrgavrsgrssedrawvgharvkdeykgsdkeyqvkdtvrhseqlkrreriedesrpphrgredvyargnqisnedrksrqersgtrndrsantsdnnrvnekkhkessrknresevgnhnslvaskrnqedqsghvsemvcsidtra

MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNStpphtlaptpplpSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENSEHQNRNegeageeaeddwesdseddLQIVLNEDNHRPMLIdggggdddddedgdPLVIVADADASNHQGLMVEEQEWGGDDAPAQMgeggaekkegtgeRangaaasaataaaaaKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSVDDDSSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVeqpelqefdeeedsraarssensKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSYRPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKrerddildqrrredqqrireNFDDHHPVRHKDENWSqrergerqrereDWHRLKPHEEILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRERIEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSRKNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDTRA

**********************************************************************************************************************************************************************************************************************************************AAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPI*********************************************************VNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL***********************************************AIIEIVC*****************************************YFDGFR****************FM***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

***DDEFGDLYTDVLR*****************************************************************************************************************************************QIVLN*********************GDPLVIVAD*******************************************************************YHSQFKY***********************************************************************GLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQ********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

MEDDDEFGDLYTDVLRPLS***************SLHRPIDLDLNLKSND***********HTLAPTPPLPSFHAPPRADTDGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNS****************************DLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQM***************************AAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQDSV**************LPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG*************************************************SSPVIVRDARELSVEHKDAVHDELVLGDGSSAV************************************************************************************************************MERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGF*********************SRKNRIEDTRKREREHLDEIG************IDRDEYLHSRKQLDNGSYR*****************LKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHPVRHKD****************DWHRLKPHEEILSKR******************AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRR*************REDVYARGNQI***********************************************HNSLVAS***********SEMVCSIDTRA

*****EFGDLYTDVLRPLS***********************************************************************DVKVKFDIEEANNGISNDDDVPGI**********************************SEDDLQIVLNED*******************GDPLVIVADADASNHQGLMVEEQEW*********************************AAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMG******RGDWRPAGM*T*********PGFGMSASGV*MAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQPTGRAIQVEGGSGERLPSIDTRPPRIRDSDAIIEIVCQD******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1124	2.2.26 [Sep-21-2011]
Q5XJD3		570	Pre-mRNA 3'-end-processin	no	no	0.059	0.117	0.394	4e-11
Q9D824		581	Pre-mRNA 3'-end-processin	yes	no	0.066	0.129	0.376	7e-11
Q5U317		536	Pre-mRNA 3'-end-processin	yes	no	0.066	0.139	0.376	9e-11
Q5RAA7		588	Pre-mRNA 3'-end-processin	yes	no	0.079	0.151	0.343	1e-10
Q6UN15		594	Pre-mRNA 3'-end-processin	no	no	0.079	0.149	0.343	1e-10
Q09801		344	Pre-mRNA polyadenylation	yes	no	0.041	0.136	0.468	2e-09
Q6BGR9		328	Pre-mRNA polyadenylation	yes	no	0.058	0.201	0.363	6e-08
Q6C784		221	Pre-mRNA polyadenylation	yes	no	0.048	0.244	0.462	1e-07
Q6FJ55		327	Pre-mRNA polyadenylation	yes	no	0.075	0.259	0.340	1e-07
Q6CPC3		295	Pre-mRNA polyadenylation	yes	no	0.124	0.474	0.246	8e-07

>sp\|Q5XJD3\|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1 PE=1 SV=1	Back alignment and function desciption

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 4/71 (5%)

Query: 320 GFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWK 379
           G G    GV++   G    +P    + E D++ FEEKPW+ PG D++D+FN+G NE++WK
Sbjct: 140 GAGAKVKGVDLEAPGSINGVP----VLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWK 195

Query: 380 DYCKQLEQHRL 390
            YC++ ++ R+
Sbjct: 196 AYCEKQKRLRM 206

Involved in mRNA processing.
Danio rerio (taxid: 7955)

>sp\|Q9D824\|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1 PE=1 SV=1	Back alignment and function description

>sp\|Q5U317\|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus GN=Fip1l1 PE=1 SV=1	Back alignment and function description

>sp\|Q5RAA7\|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1 PE=2 SV=1	Back alignment and function description

>sp\|Q6UN15\|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1 PE=1 SV=1	Back alignment and function description

>sp\|Q09801\|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1	Back alignment and function description

>sp\|Q6BGR9\|FIP1_DEBHA Pre-mRNA polyadenylation factor FIP1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=FIP1 PE=3 SV=2	Back alignment and function description

>sp\|Q6C784\|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FIP1 PE=3 SV=1	Back alignment and function description

>sp\|Q6FJ55\|FIP1_CANGA Pre-mRNA polyadenylation factor FIP1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=FIP1 PE=3 SV=1	Back alignment and function description

>sp\|Q6CPC3\|FIP1_KLULA Pre-mRNA polyadenylation factor FIP1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=FIP1 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1124
359484826		1417	PREDICTED: uncharacterized protein LOC10	0.895	0.709	0.590	0.0
255565011		1365	ATP binding protein, putative [Ricinus c	0.960	0.791	0.541	0.0
224142409		1433	predicted protein [Populus trichocarpa]	0.938	0.736	0.514	0.0
224091696		1336	predicted protein [Populus trichocarpa]	0.953	0.802	0.532	0.0
449457917		1399	PREDICTED: uncharacterized protein LOC10	0.959	0.771	0.494	0.0
147863604		1798	hypothetical protein VITISV_010335 [Viti	0.683	0.427	0.583	0.0
356533011		1316	PREDICTED: uncharacterized protein LOC10	0.922	0.787	0.483	0.0
356554872		1302	PREDICTED: uncharacterized protein LOC10	0.911	0.787	0.478	0.0
297743639		824	unnamed protein product [Vitis vinifera]	0.528	0.720	0.573	0.0
449521886		1174	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.617	0.591	0.530	1e-172

>gi\|359484826\|ref\|XP_002276238.2\| PREDICTED: uncharacterized protein LOC100251960 [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1072 bits (2772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1116 (59%), Positives = 780/1116 (69%), Gaps = 110/1116 (9%)

Query: 82   DGEFTDNDNDVKVKFDIEEANNGISNDDDVPGIEIPGISQNSVENS-----EHQNRNEGE 136
            D +F + D    V FDIEE + G + D  +  I IPG+S      S     E QNR +  
Sbjct: 157  DVDFMEKD----VNFDIEEVD-GEAGDVGLDPI-IPGLSAAPAIPSLDAPVEPQNREKTN 210

Query: 137  AGEEAEDDW-------ESDSEDDLQIVLNEDNHRPMLIDGGG--GDDDDDEDGDPLVIVA 187
                A DD        +SDSEDDLQIVLN++NH PM  +  G  G DD+DEDGDPLVIVA
Sbjct: 211  V--VARDDASVQGDDWDSDSEDDLQIVLNDNNHGPMAAERNGVMGSDDEDEDGDPLVIVA 268

Query: 188  DADASNHQGLMVEEQEWGGDDAPAQMGEGGAEKKEGTGERANGAAASAATAAAAA--KIG 245
            D D ++     +EEQEWG D A               GER  GA A+    A A   KIG
Sbjct: 269  DGDQTHPP---LEEQEWGEDTAV-------------DGERKEGADAAKVNGAIAGPPKIG 312

Query: 246  YSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAAGRGRGDWRPA 305
            YS+H  YH P+HSQFKYVRPGAAPIPG+A  V  G PGQVRPL N+GP  GRGRGDWRPA
Sbjct: 313  YSSH-GYH-PFHSQFKYVRPGAAPIPGAAAVVPGGTPGQVRPLANIGPVPGRGRGDWRPA 370

Query: 306  GMKTAPPMQKGFHPGFGMSASGVNMAGRG----LEFTLPSHKTIFEVDIDGFEEKPWKYP 361
            G+K APPMQK FH GFG  A G NMAGRG    LEFTLPSHKTIF+VDID FEEKPW++P
Sbjct: 371  GIKNAPPMQKNFHSGFGAPAWGGNMAGRGFGGGLEFTLPSHKTIFDVDIDSFEEKPWRHP 430

Query: 362  GVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRVYESGRDQ-------------- 407
            GVDI+DFFNFG NEESWK YCKQLEQ RLE TMQ+KIRVYESGR +              
Sbjct: 431  GVDISDFFNFGFNEESWKQYCKQLEQLRLEATMQTKIRVYESGRTEQEYDPDLPPELAAA 490

Query: 408  ----------------------------------PTGRAIQVEGGSGERLPSIDTRPPRI 433
                                              PTGRAIQVEGG GERLPS+DTRPPR+
Sbjct: 491  VGIHDVSAENGNLGRADVGPSDLAKASARVRPPIPTGRAIQVEGGCGERLPSVDTRPPRV 550

Query: 434  RDSDAIIEIVCQDSVDDDSSAGNGDR---DNDLPREDRRGENDGAEDEMGPVDTEYFDGF 490
            RDSDAIIEI  Q S+DDDS  GNG     DNDLPRED R  N+  ED+    DTEYFD F
Sbjct: 551  RDSDAIIEITLQGSLDDDSPTGNGAPEPPDNDLPREDLRVGNE-VEDDAAQEDTEYFDSF 609

Query: 491  REAYDSRNRELVRHEAPFMNVAHDNIPEGNGLLPFPPEAPLRYRPGSRGPTPKYPGENIG 550
               Y  RNRELV   APFMN   D++P G+G+LPFPPEAP++YRPGSRG  P +PG N G
Sbjct: 610  STTYSGRNRELVGRSAPFMNSLRDDMPGGDGILPFPPEAPVQYRPGSRGQDPVHPGGNFG 669

Query: 551  TSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPLSSPVIVRDARE 610
            T HE R        +SP MTP QS +  +F D+Q EESVESM+ K    SSPV V   RE
Sbjct: 670  TPHEDR-----AHGKSPHMTPIQSTRDNRFLDSQKEESVESMDVK-GMTSSPVRVAPPRE 723

Query: 611  LSVEHKDAVHDELVLGDGSSAVEKEE--TNAVTTSDSRKDGKALYSPKTKKINSQVEQPE 668
             SVE KDA+   +VL DG+S +E+EE  +N +T++D+ KD   +   K +K++S+VEQP 
Sbjct: 724  PSVEKKDALDGGIVLADGTSGMEREELTSNTMTSTDALKDENLIPFGKKQKLSSRVEQPP 783

Query: 669  LQEFDEEEDSRAARSSENSKARSGSSRDNKKWREG-DEEVMQDRRSTRMGSMKKHPEENE 727
             QE D +ED +A RSSENSKARS SSRD +KW +G +EEV++D  S RMG+ K+H +E+E
Sbjct: 784  PQELDGDEDLKATRSSENSKARSESSRDLQKWHDGGEEEVIEDGSSVRMGNSKRHLDEDE 843

Query: 728  QSFRRKDREGRQEMERNRMVAIGREGSHPRRDFDPSLTHDMQMKPEGFDRRKERENSDGV 787
            QSFRRKDR+GRQEMER+RMV  GRE ++P RD+D    H   +K + FDRRKER++SDG 
Sbjct: 844  QSFRRKDRDGRQEMERSRMVVKGREDTYPHRDWDSIPNHHSHVKTDSFDRRKERDSSDGG 903

Query: 788  WQRREDEPYSRKNRIEDTRKREREHLDEIGARHRGKARESERIDRDEYLHSRKQLDNGSY 847
            WQRR+D+ + R+ R ED RK+ER   DE+G+RHR K RESER ++DE LHSRK LDNGS+
Sbjct: 904  WQRRDDDLHGRRIRPEDARKQERG--DEMGSRHRSKVRESERSNKDELLHSRKLLDNGSW 961

Query: 848  RPHYDKDASSRHRERDDSLKSRYEMVDDYISKRRKDDEYVRRDHAEKDEILHGHRDLTSR 907
            R H DKD  SRHRERDD+LKSRY  +DD   KRRKD+EY+RRDHAEK+E LH HR+  SR
Sbjct: 962  RGHQDKDMGSRHRERDDNLKSRYGNLDDLHGKRRKDEEYLRRDHAEKEETLHSHRESASR 1021

Query: 908  RKRERDDILDQRRREDQQRIRENFDDHHPVRHKDENWSQRERGERQREREDWHRLK-PHE 966
            RKRERDD+LDQR+R+DQ RIR+N DDHH VRHKDE W QRERGERQRERE+WHRL+ PHE
Sbjct: 1022 RKRERDDVLDQRKRDDQPRIRDNLDDHHSVRHKDEGWMQRERGERQREREEWHRLRQPHE 1081

Query: 967  EILSKREREEGRGAVRSGRSSEDRAWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKRRER 1026
            E LSKREREEGRGAVRSGR +ED+AWV HAR KDEYKGSDK+YQ KDT RHSEQ KRR+R
Sbjct: 1082 ENLSKREREEGRGAVRSGRGAEDKAWVSHARGKDEYKGSDKDYQYKDTGRHSEQPKRRDR 1141

Query: 1027 IEDESRPPHRGREDVYARGNQISNEDRKSRQERSGTRNDRSANTSDNNRVNEKKHKESSR 1086
            +EDES   HRGREDVYARG+Q SNE+R+SRQERS  RND S+N SD+ RV++KKHKE++R
Sbjct: 1142 VEDESFSHHRGREDVYARGSQFSNEERRSRQERSSARNDHSSNASDHQRVHDKKHKENTR 1201

Query: 1087 KNRESEVGNHNSLVASKRNQEDQSGHVSEMVCSIDT 1122
            KN+ESE  + ++L  SKRNQED +   +E V S  T
Sbjct: 1202 KNKESEGADISTLGPSKRNQEDHNSQRNETVISKGT 1237

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255565011\|ref\|XP_002523498.1\| ATP binding protein, putative [Ricinus communis] gi\|223537205\|gb\|EEF38837.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|224142409\|ref\|XP_002324551.1\| predicted protein [Populus trichocarpa] gi\|222865985\|gb\|EEF03116.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224091696\|ref\|XP_002309330.1\| predicted protein [Populus trichocarpa] gi\|222855306\|gb\|EEE92853.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449457917\|ref\|XP_004146694.1\| PREDICTED: uncharacterized protein LOC101212971 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147863604\|emb\|CAN81922.1\| hypothetical protein VITISV_010335 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356533011\|ref\|XP_003535062.1\| PREDICTED: uncharacterized protein LOC100803769 [Glycine max]	Back alignment and taxonomy information

>gi\|356554872\|ref\|XP_003545766.1\| PREDICTED: uncharacterized protein LOC100799266 [Glycine max]	Back alignment and taxonomy information

>gi\|297743639\|emb\|CBI36522.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449521886\|ref\|XP_004167960.1\| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101227301, partial [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1124
TAIR\|locus:2155806		1196	FIP1[V] "homolog of yeast FIP1	0.335	0.315	0.450	1.1e-121
DICTYBASE\|DDB_G0288797		560	fip1l1 "cleavage and polyadeny	0.118	0.237	0.354	4e-21
UNIPROTKB\|E1BWP4		580	Gga.5511 "Uncharacterized prot	0.196	0.381	0.267	1.2e-15
FB\|FBgn0031273		826	CG2839 [Drosophila melanogaste	0.367	0.5	0.220	2.6e-15
MGI\|MGI:1914149		581	Fip1l1 "FIP1 like 1 (S. cerevi	0.186	0.361	0.297	2.7e-15
FB\|FBgn0037255		701	Fip1 [Drosophila melanogaster	0.071	0.114	0.385	4.1e-14
RGD\|1309336		536	Fip1l1 "FIP1 like 1 (S. cerevi	0.070	0.147	0.4	2.4e-13
UNIPROTKB\|Q5U317		536	Fip1l1 "Pre-mRNA 3'-end-proces	0.070	0.147	0.4	2.4e-13
ZFIN\|ZDB-GENE-041010-138		570	fip1l1b "FIP1 like 1b (S. cere	0.059	0.117	0.394	4.8e-13
UNIPROTKB\|Q6UN15		594	FIP1L1 "Pre-mRNA 3'-end-proces	0.079	0.149	0.363	5.5e-13

TAIR\|locus:2155806 FIP1[V] "homolog of yeast FIP1 [V]" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 767 (275.1 bits), Expect = 1.1e-121, Sum P(2) = 1.1e-121
 Identities = 193/428 (45%), Positives = 228/428 (53%)

Query:     1 MEDDDEFGDLYTDVLRPLSAASQSPHQTSPAAPTSLHRPIDLDLNLKSNDHPASAPNSX- 59
             ME+DDEFGDLY+DVL+P       P    P  P   HR IDL  NL+S D   S PNS  
Sbjct:     1 MEEDDEFGDLYSDVLQPFQ-----PPVVLPPPPPLPHRSIDL--NLRSQDQDVSEPNSAP 53

Query:    60 -XXXXXXXXXXXXSFHAPPRADTDGEFTDNDNDVKVKFDIEE--ANN-----GISNDDDV 111
                          +  A  +A  DG   D D    + FDIEE  A++     G+     +
Sbjct:    54 ISRVSDNDAVKLSTQDATRQAIVDGGGDDKD----MSFDIEEPDADSTPTIPGLFVTGAL 109

Query:   112 PGIEIP-GISQ--NSVENSEHQNRNXXXXXXXXXXXXXXXXXXXLQIVLNEDNHRPMLIX 168
             PG+    G+SQ    +E       +                   LQIVLN D+ R ++I 
Sbjct:   110 PGLATDRGVSQVTTRIEQQVGGGGDGGYGGQGEGDDWDSDSEDDLQIVLN-DSSRNVMIG 168

Query:   169 XXXXXXXXXXXXX--------PLVIVADADASNHQGLMVEEQEWGGDDAPAQMXXXXXXX 220
                                  PLVIVAD D +      +EEQ WG D             
Sbjct:   169 GADRRSRMGDNEDDDDEDDEDPLVIVADTDPNQP----MEEQMWGEDGLQG-------IE 217

Query:   221 XXXXXXRXXXXXXXXXXXXXXXKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAG 280
                                   K GYS+H  YH P+HSQFKYVRPGAAPIPG A +V   
Sbjct:   218 GDGKDGGEAGKGSGPGGATGPPKAGYSSH-GYH-PFHSQFKYVRPGAAPIPGGAASVGGP 275

Query:   281 GPGQVRPLVNMGPAAGRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLP 340
               GQVRP  N+GP AGRGRGDWRP GM+ A   QKGFH  +G      N AGRGL+FTLP
Sbjct:   276 SSGQVRPPANLGPMAGRGRGDWRPLGMRNASAAQKGFHQPWGS-----NTAGRGLDFTLP 330

Query:   341 SHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRLETTMQSKIRV 400
             SHKTIFEVDID FEEKPW+YPGV++TD+FNFGLNEESWKDYCKQL+QHR++TTMQS+IRV
Sbjct:   331 SHKTIFEVDIDSFEEKPWRYPGVEMTDYFNFGLNEESWKDYCKQLDQHRIQTTMQSRIRV 390

Query:   401 YESGR-DQ 407
             YESGR DQ
Sbjct:   391 YESGRTDQ 398

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0003723 "RNA binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006397 "mRNA processing" evidence=RCA

GO:0008284 "positive regulation of cell proliferation" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

DICTYBASE\|DDB_G0288797 fip1l1 "cleavage and polyadenylation specificity factor FIP1" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BWP4 Gga.5511 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

FB\|FBgn0031273 CG2839 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

MGI\|MGI:1914149 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0037255 Fip1 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

RGD\|1309336 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5U317 Fip1l1 "Pre-mRNA 3'-end-processing factor FIP1" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041010-138 fip1l1b "FIP1 like 1b (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q6UN15 FIP1L1 "Pre-mRNA 3'-end-processing factor FIP1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XVIII000956	hypothetical protein (1433 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1124
pfam05182		45	pfam05182, Fip1, Fip1 motif	6e-20
COG5213		266	COG5213, FIP1, Polyadenylation factor I complex, s	4e-08
PRK12678		672	PRK12678, PRK12678, transcription termination fact	2e-04
TIGR00934		800	TIGR00934, 2a38euk, potassium uptake protein, Trk	4e-04
PRK13875		440	PRK13875, PRK13875, conjugal transfer protein TrbL	0.003
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl\|CDD\|191218 pfam05182, Fip1, Fip1 motif	Back alignment and domain information

 Score = 83.8 bits (208), Expect = 6e-20
 Identities = 27/45 (60%), Positives = 37/45 (82%)

Query: 346 FEVDIDGFEEKPWKYPGVDITDFFNFGLNEESWKDYCKQLEQHRL 390
           F+ D++ FEEKPW+ PG DI+D+FN+G NEE+WK YCK+ E+ RL
Sbjct: 1   FDYDLESFEEKPWRKPGADISDYFNYGFNEETWKLYCKKQERLRL 45

This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor. Length = 45

>gnl\|CDD\|227538 COG5213, FIP1, Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]	Back alignment and domain information

>gnl\|CDD\|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional	Back alignment and domain information

>gnl\|CDD\|130009 TIGR00934, 2a38euk, potassium uptake protein, Trk family	Back alignment and domain information

>gnl\|CDD\|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1124
KOG1049		538	consensus Polyadenylation factor I complex, subuni	100.0
PF05182		45	Fip1: Fip1 motif; InterPro: IPR007854 This short m	99.9
COG5213		266	FIP1 Polyadenylation factor I complex, subunit FIP	99.84
KOG0921		1282	consensus Dosage compensation complex, subunit MLE	85.61

>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]	Back alignment and domain information

Probab=100.00  E-value=4.4e-45  Score=403.17  Aligned_cols=500  Identities=21%  Similarity=0.248  Sum_probs=339.3

Q ss_pred             ccCCcccCcccCCCccCceEEeccCCCCCccccCCCCCCCCCCCCCceEEEecCCCCCccCcchhhcccCCCCCcccCCC
Q 001204          136 EAGEEAEDDWESDSEDDLQIVLNEDNHRPMLIDGGGGDDDDDEDGDPLVIVADADASNHQGLMVEEQEWGGDDAPAQMGE  215 (1124)
Q Consensus       136 ~~~~~~~ddwdSDSeDdlqiVlNd~~~~p~~~~r~~gdddddeD~d~lvivadg~~~~~~~~~~Eeq~Wg~~~a~~~~G~  215 (1124)
                      .+.++.++.|+.|.|+.+++|++...-+.|+..-   |-+|.+|++.++||++.+.+    ..+++++|....  ..-|.
T Consensus        24 ~~e~~~~~~e~~d~ee~~~~~~p~e~~~~~~~~~---~~~d~dDd~~~~~~~e~d~~----~~d~~s~~~~d~--~~~~~   94 (538)
T KOG1049|consen   24 EDEAETGASEDPDIEERVKSVSPGESKKFDVVAD---DSDDCDDDDEEMESLEPDPE----SLDSDSDDDEDS--SLKDE   94 (538)
T ss_pred             ccccccccccCccHHHhhcccCCccccccccccc---ccccCCchhhhhccCCCCcc----cccccccchhcc--ccCCc
Confidence            4566778899999999999999999876554211   12555667778888877766    788999998830  00111


Q ss_pred             CCcccccCcccccCcchhhhhhhcccccccccCCCCcCCCCCCcccccCCCCCCCCCCcccCCCCCCCccCCCccCCCCC
Q 001204          216 GGAEKKEGTGERANGAAASAATAAAAAKIGYSNHFAYHNPYHSQFKYVRPGAAPIPGSATAVAAGGPGQVRPLVNMGPAA  295 (1124)
Q Consensus       216 ~gaerk~ggge~~~~~~~~~~~a~~~~kiGys~~g~~~hp~HsqfKYVRPgaa~~pga~~~~~~g~pgqvrpp~~~~~~a  295 (1124)
                      .+        .++      ...++                     ||+.++.+..+++...+...+.+|+          
T Consensus        95 ~~--------~~~------~~~~~---------------------k~~~~~~a~~~~~~~~v~i~t~~~~----------  129 (538)
T KOG1049|consen   95 DD--------VAV------DESAV---------------------KTSDDQEASEGSSDQNVTIRTVKAT----------  129 (538)
T ss_pred             cc--------ccc------ccccc---------------------cccCccccccCCCcceeeecccccc----------
Confidence            11        110      00000                     8999999999998888877777766          


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCcccCCccccccCCCCCcceeecCCCcCCCCCCCCCCCCcccccCCCCH
Q 001204          296 GRGRGDWRPAGMKTAPPMQKGFHPGFGMSASGVNMAGRGLEFTLPSHKTIFEVDIDGFEEKPWKYPGVDITDFFNFGLNE  375 (1124)
Q Consensus       296 GrgrGdWrp~g~k~~~~~~k~fh~G~g~~~~G~~~agrG~eF~lp~~k~IfdvDiD~~eeKPWRkPGADISDYFNYGFnE  375 (1124)
                                   .++..+|+++.     +|.-.+.|..      ...+||+||||.|++||||+|||||||||||||||
T Consensus       130 -------------~~~a~~kg~~~-----~~dld~~g~i------n~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNE  185 (538)
T KOG1049|consen  130 -------------NKSAAPKGKMS-----QVDLDTPGTI------NGVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNE  185 (538)
T ss_pred             -------------ccccccccCcc-----cccccCCccc------CCccceeecHHHhccCcccCCCccchhhhccccCH
Confidence                         11223555553     4443333333      22389999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhchhhhhhhhccCC---CCCCCceeeecCCCCCCCCCCCCCCCCcCCCC-CceEEeeccCccCC
Q 001204          376 ESWKDYCKQLEQHRLETTMQSKIRVYESGR---DQPTGRAIQVEGGSGERLPSIDTRPPRIRDSD-AIIEIVCQDSVDDD  451 (1124)
Q Consensus       376 ~TWk~Yc~kq~qlR~E~tmqsKI~~yEsg~---~lptGRaIQVEgg~geR~PS~D~RpPR~rDSD-~IIeIv~qdS~Dd~  451 (1124)
                      +||++||++|++||.+|++...+.+++..+   .+++.-.||..+    -.|.+       .... +-..++|.++..- 
T Consensus       186 eTWk~YC~rQkrlrie~~~~~~~~~~e~~r~~~~~~~~l~~q~~g----~~p~~-------~~ts~~~~~~~~~~~~~~-  253 (538)
T KOG1049|consen  186 ETWKAYCERQKRLRIEFAGGGLERTTEPLRRQRDLFGELKIQIPG----PGPVG-------NLTSRTSVGARGIDSNQR-  253 (538)
T ss_pred             HHHHHHHHHHhhhhhhhcccccccccccccccccCcchhhhccCC----CCCcc-------ccCCccccccccCCCCCC-
Confidence            999999999999999999988888877654   344444444332    11111       1110 0111222211110 


Q ss_pred             CCCCCCCCCCCCCcccccCCCCCCCCCCCCCcccccccccccccchhhhhccccccccccccCCCCCCCCC-------CC
Q 001204          452 SSAGNGDRDNDLPREDRRGENDGAEDEMGPVDTEYFDGFREAYDSRNRELVRHEAPFMNVAHDNIPEGNGL-------LP  524 (1124)
Q Consensus       452 ~s~~n~~q~n~~~r~d~r~~~~~~e~~M~~~~~ey~~gfpq~y~~r~~~~~g~~~p~mns~~~n~pegd~~-------lp  524 (1124)
                           .  .+.                   +.+.+...-...+.+.     ...-|+.|+-..++--|.+.       .|
T Consensus       254 -----~--~~~-------------------~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~r~g~~~~~~~~~~~p  302 (538)
T KOG1049|consen  254 -----P--AND-------------------VPPSGGGRPLMSVTGS-----RPAEPSSNSQAPGARSGSGEPSGMSEPPP  302 (538)
T ss_pred             -----C--CCC-------------------CCCCCCCcccccccCC-----cCcCCCCCccCccccCCCCCCCCCCCCCC
Confidence                 0  000                   0000100000000000     11223333322233333322       23


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCchhhccCCCCCCCCCCCCCCCCCchhhcccccchhhhhhhccCCCCCC-CCCc
Q 001204          525 FPPEAPLRYRPGSRGPTPKYPGENIGTSHEQRRRPGRTGDRSPRMTPSQSPQIRKFHDNQDEESVESMEGKHSPL-SSPV  603 (1124)
Q Consensus       525 ~~~~~p~~~~~gsrg~~p~~~g~~~gtp~e~r~~~gr~~~~Sp~~tP~Qs~~~krf~Dsq~EEs~ESmdgk~s~~-sSPv  603 (1124)
                      +-...|.++.-..-|..++ |-.++-          .+..+.++++|.|+...+--|..+.|+...|.++..|.. ..|.
T Consensus       303 ~~~a~p~~~~~~~~~~~~s-p~~~~t----------~Pg~~~ap~~p~~~~~~p~s~g~~~e~~~~s~~~~~s~~~~p~g  371 (538)
T KOG1049|consen  303 SMEAGPSQKERLPPGPEES-PPSNET----------APGASEAPSSPGDSGPPPSSLGPNEESDDYSTESGKSARTDPPG  371 (538)
T ss_pred             CcCCCCChhhccCCCcCCC-CCcCCC----------CCCcccCCCCCCCCCCCccccCcCCCCCCcccccccccccCCCc
Confidence            3333444444444443333 112222          245577888999988889999999999999999988887 7888


Q ss_pred             cccccccccccccccccccccccCCCccccccccccccccccccCCCcccCcccccccccccCcccccCChhHHHHHhhc
Q 001204          604 IVRDARELSVEHKDAVHDELVLGDGSSAVEKEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARS  683 (1124)
Q Consensus       604 ~v~dare~S~E~kD~~d~e~~~adgss~~~~dE~n~~T~~D~~kd~~l~hs~kkqK~~S~veQp~~qe~d~~~dska~rs  683 (1124)
                      .|+.+.. ++--.+.....+  .++.       +                 .-..++.+...+...+. ++..-++.+|.
T Consensus       372 ~~~~pp~-~~h~~~~~~~s~--~~~~-------~-----------------~~~~~m~~~~~~~~~~~-r~~~rs~~~r~  423 (538)
T KOG1049|consen  372 EVRPPPQ-SAHLAAPEGPSP--KRGE-------S-----------------SPDMYMRHRSPHSRSRD-RDNGRSGYRRR  423 (538)
T ss_pred             ccCCCcc-ccccccCCCCCC--Cccc-------c-----------------CccccccCCCccccccc-ccccccchhhh
Confidence            8888766 555544311122  1111       1                 13356777777888888 77888899999


Q ss_pred             ccccccccCCcccchhhccCcccccccccccccCCcCCCCCccchhhhhhhhhhhHHHHhhhhhhc-ccCCCCCCCCCCC
Q 001204          684 SENSKARSGSSRDNKKWREGDEEVMQDRRSTRMGSMKKHPEENEQSFRRKDREGRQEMERNRMVAI-GREGSHPRRDFDP  762 (1124)
Q Consensus       684 SenSkaRSgSskD~qk~~e~eEeV~qd~~S~r~g~~rrh~de~e~~~rrkdrd~r~emER~r~~~~-gRe~syp~rd~dp  762 (1124)
                      |+.+++++++.||.|.    +|-|++++.|.+.-++++|+..+....+||.+|.-.||||.|..+. +++..-+||-||-
T Consensus       424 ~~~~s~~~~~~rd~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~rk~~d~~REr~~rr~~~~~~~d~~~~~r~~~~  499 (538)
T KOG1049|consen  424 SRSRSPTRDPGRDKKP----GELVGLGRDSSKRWRNGPPRTLERDETSRKKVDRDREREHRRKESSVDKDRHREHRRWDE  499 (538)
T ss_pred             hhcccCCCCcccCCCC----CcccccccccChhhhccCCCccccccccccccchhhHHHHHHhhhccchhhcchhhhhhh
Confidence            9999999999999999    9999999999999999999999999999999999999999999998 8899999999999


Q ss_pred             CCcccccCCCCCccccccccCCcccccccccCcccccc
Q 001204          763 SLTHDMQMKPEGFDRRKERENSDGVWQRREDEPYSRKN  800 (1124)
Q Consensus       763 ~~~~~~~~~~e~~Dr~keren~d~~Wqrredd~~~rr~  800 (1124)
                      +.... ..+++.|++.|+++.....|..+....++++.
T Consensus       500 ~~e~s-~~r~~~~~kskr~~~~~~~~s~~~~~~e~~~~  536 (538)
T KOG1049|consen  500 NEESS-SGRREDHSKSKRSGTHLEEYSSRSSFDESQRN  536 (538)
T ss_pred             ccccc-cccchhcchhhhccccchhhccCCCccccccc
Confidence            87766 67889999999999999999999999998875

>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []	Back alignment and domain information

>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]	Back alignment and domain information

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1124
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 46.4 bits (109), Expect = 6e-05
 Identities = 85/592 (14%), Positives = 162/592 (27%), Gaps = 200/592 (33%)

Query: 579  KFHDNQDEESVESMEGKHSPLSSPVIVRDARELSVEHKDAVHD-----ELVLGDGSSAVE 633
             F DN D + V+ M    S LS      +   + +  KDAV         +L      V+
Sbjct: 28   AFVDNFDCKDVQDMP--KSILSK----EEIDHI-IMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 634  KEETNAVTTSDSRKDGKALYSPKTKKINSQVEQPELQEFDEEEDSRAARSSENSKARSGS 693
            K     V     R + K L SP    I ++  QP +       + R    ++N      +
Sbjct: 81   K----FVEEVL-RINYKFLMSP----IKTEQRQPSMMT-RMYIEQRDRLYNDNQVFAKYN 130

Query: 694  -SRDNKKW--REGDEEVMQDRRSTR-----MGSMKK----------HPEENEQSFR---- 731
             SR       R+    +++ R +       +    K          +  + +  F+    
Sbjct: 131  VSRLQPYLKLRQA---LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 732  --RKDREGRQEMER-NRMVAIGREGSHPRRDFDPSL---THDMQMKPEGFDRRKERENS- 784
              +        +E   +++         R D   ++    H +Q +     + K  EN  
Sbjct: 188  NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 785  ---DGVWQRREDEPY---------SRKNRIED------TRKREREHL------DE----- 815
                 V   +    +         +R  ++ D      T     +H       DE     
Sbjct: 248  LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 816  -------------------------IGARHRGKARESERIDR-DEYLH------------ 837
                                     I    R      + +   D + H            
Sbjct: 308  LKYLDCRPQDLPREVLTTNPRRLSIIAESIR------DGLATWDNWKHVNCDKLTTIIES 361

Query: 838  SRKQLDNGSYRPHYD------KDA------------SSRHRERDDSLKS--RYEMVDDYI 877
            S   L+   YR  +D        A                 +    +    +Y +V+   
Sbjct: 362  SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE--- 418

Query: 878  SKRRKDDEYVRRDHAEKDEILHG-HRDLTSRRKRERDDILDQRRREDQQRIRENFDDHHP 936
             K+ K+              +   + +L  + K E +  L  R   D   I + FD    
Sbjct: 419  -KQPKESTIS----------IPSIYLEL--KVKLENEYAL-HRSIVDHYNIPKTFDSDDL 464

Query: 937  VRHKDENWSQRERGERQREREDWHRLKPHEEILSKREREEGRGAVRSGRSSE------DR 990
            +    + +               H +  H   L   E  E        R +       D 
Sbjct: 465  IPPYLDQYFY------------SH-IGHH---LKNIEHPE--------RMTLFRMVFLDF 500

Query: 991  AWVGHARVKDEYKGSDKEYQVKDTVRHSEQLKR-RERIEDESRPPHRGREDV 1041
             ++   +++ +    +    + +T+   +QLK  +  I D      R    +
Sbjct: 501  RFLE-QKIRHDSTAWNASGSILNTL---QQLKFYKPYICDNDPKYERLVNAI 548

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00