Citrus Sinensis ID: 001216

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120--
MLLTRYILVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASFVSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEQQNSEFERSSSSSHATTSDSRDGELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIASSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTALDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVSHEAQSNGSKKPRGEENYFPDESTEDLQKDLRTRKVKRQGPVAAFDSYVLAAVCALACELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYFNPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI
cHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccEEEEEEEEEEEccEEEEcccccccccHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHccccEEEEEEccHHHHHHcccccccccccccccccccccHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHccccccccccccccEEEccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHEEEccccccccccccccccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccEEEccccccccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHcccccEEccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccc
cHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccEEEEEEHEEEEccEEEEccccccccHEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccHEEccccccccEccccccccccccccccccccccccccccEEEEcccEEEEEEccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEccccccccccccHccEccHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHccccccccccccccEEEEccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHccccccHccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHEEEEccccccccccccccccccHHHcccccccccccccEcccccEHHHHHHHHHHHHHHHHHHcccHEEcccccccccccHHHHHcccccccccHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHEccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHEEcHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccHEcccccEcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccEcc
MLLTRYILVQLIRshyphkerrlFDDVLAMFVLhhpehghavALPIISciidgtlvydkssppfasfvslvcpnseneysEQWALACTEILRILThynrpiykteqqnseferssssshattsdsrdgelsnmplvqqerkplrplspwITDILLaaplgirsdyfrwcsgvmgkyaagelkpptiassrgsgkhpqlmlstprwavangAGVILSVCDDELARYETATLTAAavpalllppattaLDEHLvaglpalePYARLFHRYYAFATPSATQRLLLGLleappswapdALDAAVQLVELLRAAEEYAtgiklprnwMHLHFLRAIGVAMSMRAGIAADAAAALLFRILsqpallfpplrqvdgvevqheplggyiSCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAygliplsssavdlpeiivatplqppilswnlyipllkvleylprgspseACLMKIFVATVEAIIKrtfppesspentrraRHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVsheaqsngskkprgeenyfpdestEDLQKDLRTrkvkrqgpvaafDSYVLAAVCALACELqlvplvsrsgnhskskdaqilakpakingnsnecksSIESAIHHTHRILTILEALFslkpssigtswgysSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYSRATSLYNLIDIHRKAVASIVNKAeplkahlmhapiwrdsiacsdgqklhkcakggyfnpenassshceasdqpeihlksegascsdessgnglgKGIASFLVDASDlanfltmdrhigfncsAQFLLRSVLAEKQELCFSVVSLLWNKLiaapetqpsaestsaQQGWRQVVDALCNvvsasptkAATAVVLQAERElqpwiakdddqGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRatdgmlvdgeactlpqlELLEATARAIQPILRWGKSGLAIADGLSNLLkcrlpatirclshpsahvRALSTSVLRDflhtssfkSNIEQVErngihgsslhyfnidainwqSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI
MLLTRYILVQLIrshyphkeRRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASFVSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEqqnseferssssshattsdsrdgelsnMPLVQQerkplrplspWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIASSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTALDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYAtgiklprnwMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKrtfppesspentrRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVSheaqsngskkprgeenyfpdesTEDLQKDLRTRKVKRQGPVAAFDSYVLAAVCALACELQLVPLVSRSGNHSKSKDAQilakpakingnsNECKSSIESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYFNPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPwiakdddqgqkmWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI
MLLTRYILVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASFVSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEQQNseferssssshattsdsrdGELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIASSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYEtatltaaavpalllppattalDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRagiaadaaaaLLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVSHEAQSNGSKKPRGEENYFPDESTEDLQKDLRTRKVKRQGPVAAFDSYvlaavcalacELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYFNPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI
**LTRYILVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASFVSLVCPNSENEYSEQWALACTEILRILTHYNRPIY*******************************************LSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGE******************MLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTALDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKRT************************NLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVS***************************************PVAAFDSYVLAAVCALACELQLVPLV********************************ESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYF************************************GKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAA**************GWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTI**
**LTRYILVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASFVSLVCPNSENEYSEQWALACTEILRILTHYNRPIY*******************************************LSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGEL*****************MLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTALDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCY***********TIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKRT************************NLAVAELRTMVHSLFLESCASVELASRLLFIVLTVC*******************************************AAFDSYVLAAVCALACELQLVPLVS*****************************SIESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWR*************************************************************SFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLI*******************QVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTS*****************SLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI
MLLTRYILVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASFVSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTE************************LSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA**********LMLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTALDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKRTFP************HLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVS*************************LQKDLRTRKVKRQGPVAAFDSYVLAAVCALACELQLVPLVSR*********AQILAKPAKINGNSNECKSSIESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYFNPE**************IHLK*************GLGKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAP**************WRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI
MLLTRYILVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASFVSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEQ**********************************KPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTI*****SGKHPQLMLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTALDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKRTFPPE*********RHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVSHE*******************************KVKRQGPVAAFDSYVLAAVCALACELQLVPLVSRS*N**KSKDAQILAKPAKINGNSNECKSSIESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDS*********************************************************I*SFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAP***********QQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLLTRYILVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASFVSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEQQNSEFERSSSSSHATTSDSRDGELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIASSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTALDEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLRAAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQVDGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAYGLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVEAIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLFIVLTVCVSHEAQSNGSKKPRGEENYFPDESTEDLQKDLRTRKVKRQGPVAAFDSYVLAAVCALACELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTHRILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYFNPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDALCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPESLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1122 2.2.26 [Sep-21-2011]
Q9SQI21173 Protein GIGANTEA OS=Arabi yes no 0.988 0.945 0.759 0.0
Q9AWL71160 Protein GIGANTEA OS=Oryza yes no 0.982 0.95 0.708 0.0
>sp|Q9SQI2|GIGAN_ARATH Protein GIGANTEA OS=Arabidopsis thaliana GN=GI PE=1 SV=2 Back     alignment and function desciption
 Score = 1648 bits (4268), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 854/1125 (75%), Positives = 951/1125 (84%), Gaps = 16/1125 (1%)

Query: 8    LVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASF 67
            + +L+R  YP  E+RL DDVLAMFVLHHPEHGHAV LPIISC+IDG+LVY K + PFASF
Sbjct: 53   IAELVRHQYPSTEKRLLDDVLAMFVLHHPEHGHAVILPIISCLIDGSLVYSKEAHPFASF 112

Query: 68   VSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEQQNSEFERSSSSSHATTSDSRD 127
            +SLVCP+SEN+YSEQWALAC EILRILTHYNRPIYKTEQQN + ER+  S  ATTS S  
Sbjct: 113  ISLVCPSSENDYSEQWALACGEILRILTHYNRPIYKTEQQNGDTERNCLSK-ATTSGSPT 171

Query: 128  GELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA 187
             E       Q ERKPLRPLSPWI+DILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA
Sbjct: 172  SEPKAGSPTQHERKPLRPLSPWISDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA 231

Query: 188  SSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTAL 247
            S RGSGKHPQLM STPRWAVANGAGVILSVCDDE+ARYETATLTA AVPALLLPP TT+L
Sbjct: 232  S-RGSGKHPQLMPSTPRWAVANGAGVILSVCDDEVARYETATLTAVAVPALLLPPPTTSL 290

Query: 248  DEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR 307
            DEHLVAGLPALEPYARLFHRYYA ATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR
Sbjct: 291  DEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR 350

Query: 308  AAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQV 367
            AAE+YA+G++LPRNWMHLHFLRAIG+AMSMRAG+AADAAAALLFRILSQPALLFPPL QV
Sbjct: 351  AAEDYASGVRLPRNWMHLHFLRAIGIAMSMRAGVAADAAAALLFRILSQPALLFPPLSQV 410

Query: 368  DGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAY 427
            +GVE+QH P+GGY S YRKQIEVPAAEATIEATAQGIAS+LCAHGPEVEWRICTIWEAAY
Sbjct: 411  EGVEIQHAPIGGYSSNYRKQIEVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAY 470

Query: 428  GLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE 487
            GLIPL+SSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE
Sbjct: 471  GLIPLNSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE 530

Query: 488  AIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLF 547
             I+ RTFPPESS E TR+AR      SA+KNLA++ELR MVH+LFLESCA VELASRLLF
Sbjct: 531  TILSRTFPPESSRELTRKARSSFTTRSATKNLAMSELRAMVHALFLESCAGVELASRLLF 590

Query: 548  IVLTVCVSHEAQSNGSKKPRGE-----ENYFPDESTEDLQK-DLRTRKVKRQGPVAAFDS 601
            +VLTVCVSHEAQS+GSK+PR E     EN   ++   + Q  + ++R VK QGPVAAFDS
Sbjct: 591  VVLTVCVSHEAQSSGSKRPRSEYASTTENIEANQPVSNNQTANRKSRNVKGQGPVAAFDS 650

Query: 602  YVLAAVCALACELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTHR 661
            YVLAAVCALACE+QL P++S  GN S S  A  + KP KING+S E  + I+SAI HT R
Sbjct: 651  YVLAAVCALACEVQLYPMISGGGNFSNSAVAGTITKPVKINGSSKEYGAGIDSAISHTRR 710

Query: 662  ILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWD 721
            IL ILEALFSLKPSS+GT W YSS+EIVAAAMVAAH+SELFRRSKA  HALS LMRCKWD
Sbjct: 711  ILAILEALFSLKPSSVGTPWSYSSSEIVAAAMVAAHISELFRRSKALTHALSGLMRCKWD 770

Query: 722  NEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGG 781
             EI+ RA+SLYNLID+H K VASIV+KAEPL+A+L + P+ +DS+ C + ++ + CA   
Sbjct: 771  KEIHKRASSLYNLIDVHSKVVASIVDKAEPLEAYLKNTPVQKDSVTCLNWKQENTCASTT 830

Query: 782  YFNPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDR 841
             F+    S+S  E + +       + A  SDE SG    KGI  FL+DASDLANFLT DR
Sbjct: 831  CFDTAVTSASRTEMNPRG----NHKYARHSDEGSGRPSEKGIKDFLLDASDLANFLTADR 886

Query: 842  HIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDAL 901
              GF C  Q LLRSVLAEK EL FSVVSLLW+KLIAAPE QP+AESTSAQQGWRQVVDAL
Sbjct: 887  LAGFYCGTQKLLRSVLAEKPELSFSVVSLLWHKLIAAPEIQPTAESTSAQQGWRQVVDAL 946

Query: 902  CNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPES 961
            CNVVSA+P KAA AVVLQAERELQPWIAKDD++GQKMW+INQRIVK++VELMR +D PES
Sbjct: 947  CNVVSATPAKAAAAVVLQAERELQPWIAKDDEEGQKMWKINQRIVKVLVELMRNHDRPES 1006

Query: 962  LVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNL 1021
            LVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQP+L WG SGLA+ DGLSNL
Sbjct: 1007 LVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNL 1066

Query: 1022 LKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSF----KSNIEQVERNGIHGSSLHYF 1077
            LKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS        +   E+NG++  S  +F
Sbjct: 1067 LKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFF 1126

Query: 1078 NIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 1122
            N  +I+W++DI+ CL WEAHS L+T MP QFLD AA+ELGCTIS+
Sbjct: 1127 NAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171
Involved in regulation of circadian rhythm and photoperiodic flowering. May play a role in maintenance of circadian amplitude and period length. Is involved in phytochrome B signaling. Regulates 'CONSTANS' in the long-day flowering pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9AWL7|GIGAN_ORYSJ Protein GIGANTEA OS=Oryza sativa subsp. japonica GN=GI PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1122
2254708201170 PREDICTED: protein GIGANTEA-like [Vitis 0.991 0.951 0.826 0.0
2240851971171 predicted protein [Populus trichocarpa] 0.991 0.949 0.832 0.0
2240628501194 predicted protein [Populus trichocarpa] 0.991 0.932 0.807 0.0
3582491141170 uncharacterized protein LOC100800578 [Gl 0.991 0.951 0.793 0.0
3081989091168 GIGANTEA [Glycine max] 0.991 0.952 0.793 0.0
3565760851175 PREDICTED: protein GIGANTEA-like isoform 0.991 0.947 0.792 0.0
3574435371172 Protein GIGANTEA [Medicago truncatula] g 0.992 0.950 0.791 0.0
2555667141161 Protein GIGANTEA, putative [Ricinus comm 0.978 0.945 0.812 0.0
3574435411200 Protein GIGANTEA [Medicago truncatula] g 0.992 0.928 0.772 0.0
1455670261175 LATE BLOOMER 1 [Pisum sativum] 0.992 0.948 0.791 0.0
>gi|225470820|ref|XP_002264755.1| PREDICTED: protein GIGANTEA-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1839 bits (4764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 927/1122 (82%), Positives = 1005/1122 (89%), Gaps = 9/1122 (0%)

Query: 8    LVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASF 67
            + +LIRS YP KE+RLFDDVLA FVLHHPEHGHAV LPIISCIIDGTLVYD+ +PPFASF
Sbjct: 51   IAELIRSRYPSKEQRLFDDVLATFVLHHPEHGHAVVLPIISCIIDGTLVYDRCTPPFASF 110

Query: 68   VSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEQQNSEFERSSSSSHATTSDSRD 127
            +SLVCP+SENEYSEQWALAC EILRILTHYNRPIYK E Q+SE +RSSS  HATTSDS D
Sbjct: 111  ISLVCPSSENEYSEQWALACGEILRILTHYNRPIYKVEHQSSEADRSSSGRHATTSDSVD 170

Query: 128  GELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA 187
            G+ S  PL+Q ERKP RPLSPWITDILLAAPLGIRSDYFRWC GVMGKYAAGELKPP+ A
Sbjct: 171  GKSSQGPLLQNERKPSRPLSPWITDILLAAPLGIRSDYFRWCGGVMGKYAAGELKPPSTA 230

Query: 188  SSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYETATLTAAAVPALLLPPATTAL 247
            S+RGSGKHPQL+ STPRWAVANGAGVILSVCD+E+ARYETATLTAAAVPALLLPP TTAL
Sbjct: 231  STRGSGKHPQLIPSTPRWAVANGAGVILSVCDEEVARYETATLTAAAVPALLLPPPTTAL 290

Query: 248  DEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR 307
            DEHLVAGLPALEPYARLFHRYYA ATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR
Sbjct: 291  DEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR 350

Query: 308  AAEEYATGIKLPRNWMHLHFLRAIGVAMSMRAGIAADAAAALLFRILSQPALLFPPLRQV 367
            AAE+YA+G++LPRNWMHLHFLRAIG AMSMRAGIAADAAAALLFR+LSQPALLFPPLRQV
Sbjct: 351  AAEDYASGMRLPRNWMHLHFLRAIGTAMSMRAGIAADAAAALLFRVLSQPALLFPPLRQV 410

Query: 368  DGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAY 427
            +G E QHEPL GYIS Y+KQIEVPA EATIEATAQGIAS+LCAHGPEVEWRICTIWEAAY
Sbjct: 411  EGFEFQHEPLDGYISSYKKQIEVPATEATIEATAQGIASMLCAHGPEVEWRICTIWEAAY 470

Query: 428  GLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE 487
            GLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE
Sbjct: 471  GLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE 530

Query: 488  AIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLF 547
            +I++RTFP ESS EN R+ R+L GIGSASKNLAVAELRTMVH+LFLESCASVELASRLLF
Sbjct: 531  SILQRTFPAESSRENIRKTRYLFGIGSASKNLAVAELRTMVHALFLESCASVELASRLLF 590

Query: 548  IVLTVCVSHE-AQSNGSKKPRGEENYFPDESTEDL------QKDLRTRKVKRQGPVAAFD 600
            +VLTVCVSHE AQ NGSK+PRGE+++  +E TEDL      Q+D +TRK+K+QGPVAAFD
Sbjct: 591  VVLTVCVSHEAAQQNGSKRPRGEDSHLSEEITEDLSDASGNQRDTKTRKMKKQGPVAAFD 650

Query: 601  SYVLAAVCALACELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTH 660
            SYVLAAVCALACELQL PL++R  NHS SKD QI AKPAK+NG+S+E ++SI+SAI HTH
Sbjct: 651  SYVLAAVCALACELQLFPLIARGTNHSASKDVQIRAKPAKLNGSSSEFRNSIDSAIRHTH 710

Query: 661  RILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKW 720
            RIL ILEALFSLKPSS+GTSW YSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKW
Sbjct: 711  RILAILEALFSLKPSSVGTSWSYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKW 770

Query: 721  DNEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKG 780
            D EIY+RA+SLYNLIDIH KAVASIVNKAEPL+AHL+HA +W+DS    DG K   CA  
Sbjct: 771  DEEIYTRASSLYNLIDIHSKAVASIVNKAEPLEAHLIHATVWKDSPGHKDGSKEDDCAST 830

Query: 781  GYFNPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMD 840
              F   N    H E S   +   + E A   +E +GN LGKGIASF +DAS+LANFLTMD
Sbjct: 831  SCFKSVNPLLLHSEDSAYSKSLPQFEKAPHLNEGTGNSLGKGIASFPLDASELANFLTMD 890

Query: 841  RHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDA 900
            RHIGF+CSAQ LLRSVLAEKQELCFSVVSLLW+KLIAAPET+PSAESTSAQQGWRQVVDA
Sbjct: 891  RHIGFSCSAQVLLRSVLAEKQELCFSVVSLLWHKLIAAPETKPSAESTSAQQGWRQVVDA 950

Query: 901  LCNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPE 960
            LCNVVSASP KAATAVVLQAERELQPWIAKDDD GQKMWRINQRIVKLIVELMR +D PE
Sbjct: 951  LCNVVSASPAKAATAVVLQAERELQPWIAKDDDLGQKMWRINQRIVKLIVELMRNHDRPE 1010

Query: 961  SLVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSN 1020
            SLVIL+SASDLLLRATDGMLVDGEACTLPQLELLEATARA+Q +L WG+SGLA+ADGLSN
Sbjct: 1011 SLVILSSASDLLLRATDGMLVDGEACTLPQLELLEATARAVQLVLEWGESGLAVADGLSN 1070

Query: 1021 LLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQVERNGIHGSSLHYFNID 1080
            LLKCR+PATIRCLSHPSAHVRALSTSVLRD L + S K +I+Q  RNGIH  S  Y N+ 
Sbjct: 1071 LLKCRVPATIRCLSHPSAHVRALSTSVLRDVLQSGSIKPHIKQGGRNGIH--SYQYVNLG 1128

Query: 1081 AINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 1122
             I+WQ+DIEKCLTWEAHSRLATGM  QFLD+AAKELGCTISI
Sbjct: 1129 IIDWQADIEKCLTWEAHSRLATGMTNQFLDVAAKELGCTISI 1170

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224085197|ref|XP_002307516.1| predicted protein [Populus trichocarpa] gi|222856965|gb|EEE94512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224062850|ref|XP_002300901.1| predicted protein [Populus trichocarpa] gi|222842627|gb|EEE80174.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358249114|ref|NP_001239995.1| uncharacterized protein LOC100800578 [Glycine max] gi|308198907|dbj|BAJ22594.1| GIGANTEA [Glycine max] Back     alignment and taxonomy information
>gi|308198909|dbj|BAJ22595.1| GIGANTEA [Glycine max] Back     alignment and taxonomy information
>gi|356576085|ref|XP_003556164.1| PREDICTED: protein GIGANTEA-like isoform 1 [Glycine max] gi|168480791|gb|ACA24489.1| gigantea-like protein 1 [Glycine max] Back     alignment and taxonomy information
>gi|357443537|ref|XP_003592046.1| Protein GIGANTEA [Medicago truncatula] gi|355481094|gb|AES62297.1| Protein GIGANTEA [Medicago truncatula] Back     alignment and taxonomy information
>gi|255566714|ref|XP_002524341.1| Protein GIGANTEA, putative [Ricinus communis] gi|223536432|gb|EEF38081.1| Protein GIGANTEA, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357443541|ref|XP_003592048.1| Protein GIGANTEA [Medicago truncatula] gi|355481096|gb|AES62299.1| Protein GIGANTEA [Medicago truncatula] Back     alignment and taxonomy information
>gi|145567026|gb|ABP81863.1| LATE BLOOMER 1 [Pisum sativum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1122
TAIR|locus:21996851173 GI "GIGANTEA" [Arabidopsis tha 0.988 0.945 0.72 0.0
TAIR|locus:2199685 GI "GIGANTEA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 4075 (1439.5 bits), Expect = 0., P = 0.
 Identities = 810/1125 (72%), Positives = 904/1125 (80%)

Query:     8 LVQLIRSHYPHKERRLFDDVLAMFVLHHPEHGHAVALPIISCIIDGTLVYDKSSPPFASF 67
             + +L+R  YP  E+RL DDVLAMFVLHHPEHGHAV LPIISC+IDG+LVY K + PFASF
Sbjct:    53 IAELVRHQYPSTEKRLLDDVLAMFVLHHPEHGHAVILPIISCLIDGSLVYSKEAHPFASF 112

Query:    68 VSLVCPNSENEYSEQWALACTEILRILTHYNRPIYKTEQQNXXXXXXXXXXXXXXXXXXX 127
             +SLVCP+SEN+YSEQWALAC EILRILTHYNRPIYKTEQQN                   
Sbjct:   113 ISLVCPSSENDYSEQWALACGEILRILTHYNRPIYKTEQQNGDTERNCLSKATTSGSPTS 172

Query:   128 GELSNMPLVQQERKPLRPLSPWITDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA 187
                +  P  Q ERKPLRPLSPWI+DILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA
Sbjct:   173 EPKAGSP-TQHERKPLRPLSPWISDILLAAPLGIRSDYFRWCSGVMGKYAAGELKPPTIA 231

Query:   188 SSRGSGKHPQLMLSTPRWAVANGAGVILSVCDDELARYEXXXXXXXXXXXXXXXXXXXXX 247
             S RGSGKHPQLM STPRWAVANGAGVILSVCDDE+ARYE                     
Sbjct:   232 S-RGSGKHPQLMPSTPRWAVANGAGVILSVCDDEVARYETATLTAVAVPALLLPPPTTSL 290

Query:   248 DEHLVAGLPALEPYARLFHRYYAFATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR 307
             DEHLVAGLPALEPYARLFHRYYA ATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR
Sbjct:   291 DEHLVAGLPALEPYARLFHRYYAIATPSATQRLLLGLLEAPPSWAPDALDAAVQLVELLR 350

Query:   308 AAEEYATGIKLPRNWMHLHFLRAIGVAMSMRXXXXXXXXXXLLFRILSQPALLFPPLRQV 367
             AAE+YA+G++LPRNWMHLHFLRAIG+AMSMR          LLFRILSQPALLFPPL QV
Sbjct:   351 AAEDYASGVRLPRNWMHLHFLRAIGIAMSMRAGVAADAAAALLFRILSQPALLFPPLSQV 410

Query:   368 DGVEVQHEPLGGYISCYRKQIEVPAAEATIEATAQGIASVLCAHGPEVEWRICTIWEAAY 427
             +GVE+QH P+GGY S YRKQIEVPAAEATIEATAQGIAS+LCAHGPEVEWRICTIWEAAY
Sbjct:   411 EGVEIQHAPIGGYSSNYRKQIEVPAAEATIEATAQGIASMLCAHGPEVEWRICTIWEAAY 470

Query:   428 GLIPLSSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE 487
             GLIPL+SSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE
Sbjct:   471 GLIPLNSSAVDLPEIIVATPLQPPILSWNLYIPLLKVLEYLPRGSPSEACLMKIFVATVE 530

Query:   488 AIIKRTFPPESSPENTRRARHLSGIGSASKNLAVAELRTMVHSLFLESCASVELASRLLF 547
              I+ RTFPPESS E TR+AR      SA+KNLA++ELR MVH+LFLESCA VELASRLLF
Sbjct:   531 TILSRTFPPESSRELTRKARSSFTTRSATKNLAMSELRAMVHALFLESCAGVELASRLLF 590

Query:   548 IVLTVCVSHEAQSNGSKKPRGE-----ENYFPDESTEDLQK-DLRTRKVKRQGPVAAFDS 601
             +VLTVCVSHEAQS+GSK+PR E     EN   ++   + Q  + ++R VK QGPVAAFDS
Sbjct:   591 VVLTVCVSHEAQSSGSKRPRSEYASTTENIEANQPVSNNQTANRKSRNVKGQGPVAAFDS 650

Query:   602 YXXXXXXXXXXELQLVPLVSRSGNHSKSKDAQILAKPAKINGNSNECKSSIESAIHHTHR 661
             Y          E+QL P++S  GN S S  A  + KP KING+S E  + I+SAI HT R
Sbjct:   651 YVLAAVCALACEVQLYPMISGGGNFSNSAVAGTITKPVKINGSSKEYGAGIDSAISHTRR 710

Query:   662 ILTILEALFSLKPSSIGTSWGYSSNEIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWD 721
             IL ILEALFSLKPSS+GT W YSS+EIVAAAMVAAH+SELFRRSKA  HALS LMRCKWD
Sbjct:   711 ILAILEALFSLKPSSVGTPWSYSSSEIVAAAMVAAHISELFRRSKALTHALSGLMRCKWD 770

Query:   722 NEIYSRATSLYNLIDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGG 781
              EI+ RA+SLYNLID+H K VASIV+KAEPL+A+L + P+ +DS+ C + ++ + CA   
Sbjct:   771 KEIHKRASSLYNLIDVHSKVVASIVDKAEPLEAYLKNTPVQKDSVTCLNWKQENTCASTT 830

Query:   782 YFNPENASSSHCEASDQPEIHLKSEGASCSDESSGNGLGKGIASFLVDASDLANFLTMDR 841
              F+    S+S  E + +   H   + A  SDE SG    KGI  FL+DASDLANFLT DR
Sbjct:   831 CFDTAVTSASRTEMNPRGN-H---KYARHSDEGSGRPSEKGIKDFLLDASDLANFLTADR 886

Query:   842 HIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVVDAL 901
               GF C  Q LLRSVLAEK EL FSVVSLLW+KLIAAPE QP+AESTSAQQGWRQVVDAL
Sbjct:   887 LAGFYCGTQKLLRSVLAEKPELSFSVVSLLWHKLIAAPEIQPTAESTSAQQGWRQVVDAL 946

Query:   902 CNVVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIYDSPES 961
             CNVVSA+P KAA AVVLQAERELQPWIAKDD++GQKMW+INQRIVK++VELMR +D PES
Sbjct:   947 CNVVSATPAKAAAAVVLQAERELQPWIAKDDEEGQKMWKINQRIVKVLVELMRNHDRPES 1006

Query:   962 LVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPILRWGKSGLAIADGLSNL 1021
             LVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQP+L WG SGLA+ DGLSNL
Sbjct:  1007 LVILASASDLLLRATDGMLVDGEACTLPQLELLEATARAIQPVLAWGPSGLAVVDGLSNL 1066

Query:  1022 LKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSNIEQ----VERNGIHGSSLHYF 1077
             LKCRLPATIRCLSHPSAHVRALSTSVLRD ++ SS    +       E+NG++  S  +F
Sbjct:  1067 LKCRLPATIRCLSHPSAHVRALSTSVLRDIMNQSSIPIKVTPKLPTTEKNGMNSPSYRFF 1126

Query:  1078 NIDAINWQSDIEKCLTWEAHSRLATGMPIQFLDIAAKELGCTISI 1122
             N  +I+W++DI+ CL WEAHS L+T MP QFLD AA+ELGCTIS+
Sbjct:  1127 NAASIDWKADIQNCLNWEAHSLLSTTMPTQFLDTAARELGCTISL 1171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.133   0.400    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1122      1062   0.00084  123 3  11 22  0.38    34
                                                     38  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  635 (67 KB)
  Total size of DFA:  514 KB (2235 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  84.80u 0.11s 84.91t   Elapsed:  00:00:04
  Total cpu time:  84.80u 0.11s 84.91t   Elapsed:  00:00:04
  Start:  Tue May 21 09:40:08 2013   End:  Tue May 21 09:40:12 2013
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009908 "flower development" evidence=TAS
GO:0005654 "nucleoplasm" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0042752 "regulation of circadian rhythm" evidence=RCA;IMP
GO:0048578 "positive regulation of long-day photoperiodism, flowering" evidence=IMP
GO:0009409 "response to cold" evidence=IMP
GO:0010378 "temperature compensation of the circadian clock" evidence=IMP
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA
GO:0007623 "circadian rhythm" evidence=RCA;IDA
GO:0009637 "response to blue light" evidence=IDA
GO:0010218 "response to far red light" evidence=IMP
GO:0080167 "response to karrikin" evidence=IEP
GO:0005982 "starch metabolic process" evidence=RCA
GO:0009639 "response to red or far red light" evidence=RCA
GO:0048574 "long-day photoperiodism, flowering" evidence=RCA
GO:0042542 "response to hydrogen peroxide" evidence=IMP

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SQI2GIGAN_ARATHNo assigned EC number0.75910.98840.9454yesno
Q9AWL7GIGAN_ORYSJNo assigned EC number0.70860.98210.95yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_V1131
hypothetical protein (1171 aa)
(Populus trichocarpa)
Predicted Functional Partners:
PHYB1
SubName- Full=Phytochrome B1; (1126 aa)
     •• 0.819
PHYA
SubName- Full=Phytochrome A; Flags- Fragment; (1126 aa)
     •• 0.807
PtpRR9
pseudo response regulator (541 aa)
    • • 0.734
estExt_fgenesh4_pg.C_LG_X0958
hypothetical protein (587 aa)
    • • 0.726
estExt_fgenesh4_pm.C_LG_VI0700
hypothetical protein (664 aa)
    • • 0.717
estExt_Genewise1_v1.C_LG_XIV1950
hypothetical protein (750 aa)
    • • 0.711
eugene3.00021683
hypothetical protein (710 aa)
    • • 0.703
gw1.XII.1231.1
annotation not avaliable (545 aa)
   •  • 0.702
fgenesh4_pg.C_scaffold_122000043
hypothetical protein (472 aa)
      • 0.702
estExt_fgenesh4_pg.C_LG_III0902
hypothetical protein (662 aa)
      • 0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

No hit with probability above 80.00

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1122
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 48.7 bits (115), Expect = 1e-05
 Identities = 103/641 (16%), Positives = 193/641 (30%), Gaps = 188/641 (29%)

Query: 538  SVELASRLLFIVLTVCVSHEAQSNGSKKPRGEENYFPDESTEDLQKD---LRTR-KVKRQ 593
                 +  LF  L        Q    +K       F +E    L+ +   L +  K +++
Sbjct: 59   DAVSGTLRLFWTLL-----SKQEEMVQK-------FVEEV---LRINYKFLMSPIKTEQR 103

Query: 594  GPVAAFDSYVLAAVCALACELQLVP--LVSRSGNHSKSKDAQILAKPAK---ING----- 643
             P      Y+      L  + Q+     VSR   + K + A +  +PAK   I+G     
Sbjct: 104  QPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 644  ---------NSNECKSSIESAIH--------HTHRILTILEALFSLKPSSIGTSWGYSSN 686
                      S + +  ++  I             +L +L+ L      +  +   +SSN
Sbjct: 163  KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 687  EIVAAAMVAAHVSELFRRSKACMHALSVLMRCKWDNEIY------------SRATSLYNL 734
              +    + A +  L +      + L VL     + + +            +R   + + 
Sbjct: 223  IKLRIHSIQAELRRLLKSKPYE-NCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 735  IDIHRKAVASIVNKAEPLKAHLMHAPIWRDSIACSDGQKLHKCAKGGYFNPENASSSHCE 794
            +        S+ + +  L                +  +      K  Y +        C 
Sbjct: 281  LSAATTTHISLDHHSMTL----------------TPDEVKSLLLK--YLD--------CR 314

Query: 795  ASDQPE-------IHLKSEGASCSDESS---------GNGLGKGIASFLVDASDLANFLT 838
              D P          L     S  D  +          + L   I S L       N L 
Sbjct: 315  PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL-------NVLE 367

Query: 839  MDRHIGFNCSAQFLLRSVLAEKQELCFSVVSLLWNKLIAAPETQPSAESTSAQQGWRQVV 898
               +        F   SV      +   ++SL+W  +I   ++               VV
Sbjct: 368  PAEY-----RKMFDRLSVFPPSAHIPTILLSLIWFDVI---KSDV-----------MVVV 408

Query: 899  DALCN--VVSASPTKAATAVVLQAERELQPWIAKDDDQGQKMWRINQRIVKLIVELMRIY 956
            + L    +V   P K +T  +     EL+    K +++      +++ IV     + + +
Sbjct: 409  NKLHKYSLVEKQP-KESTISIPSIYLELK---VKLENEYA----LHRSIVDH-YNIPKTF 459

Query: 957  DSPESLVILASASDLLLRATDG------------MLVDGEACTLPQLEL----LEATARA 1000
            DS           DL+    D             +           + L    LE   R 
Sbjct: 460  DS----------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509

Query: 1001 IQPILRWGKSGLAIADGLSNLLKCRLPATIRCLSHPSAHVRALSTSVLRDFLHTSSFKSN 1060
                  W  SG +I + L  L   +    I C + P    R ++   + DFL        
Sbjct: 510  DST--AWNASG-SILNTLQQLKFYK--PYI-CDNDPKYE-RLVNA--ILDFLP------- 553

Query: 1061 IEQVERNGIHGSSLHYFNIDAINWQSDIEKCLTWEAHSRLA 1101
              ++E N I      Y ++  I   ++ ++ +  EAH ++ 
Sbjct: 554  --KIEENLICSK---YTDLLRIALMAE-DEAIFEEAHKQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00