Citrus Sinensis ID: 001234

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------112
Protein Sequence
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHcccccccHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEcccccHHcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHccccccHHHHHHHHccccccccccccHcccccccccccHHHHHccccHHccccccEEccccccccccccccccccccccccEEEccccccccccccccEEEEEEEEEEEEEEEEEEEccccccccccccccccEEEEcccEEEccccccccccccccccccccHHHHHcHHHHHHccccccEEEccccccccccHHHHHHHHccccccHcHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
maspssgrlaitpssrvlqsplsdESIWKRLKeagldevsiKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAEsaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRhlnqqtslahadlgsdqkfdvtnngdrfntpsvqktasasppslarFSWIKRFADLVFKhsgensvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpsenevvKRTVDLESENNQNAAQKCKQSVSEDGIHAArkrrvdvdcvdpsellmQNNKRRkqqedfprnsseeainhgavaeqsnlpedqhtltsknksnvpeglhtltsnnhtqggneeaSILIVDKIIKISevtcemtdadnfinqekidgsqnsvAESVQDIVKvggtndhstpahtddvvlpYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Flexible Loop (DISEMBL)
maspssgrlaitpssrvlqsplsdesIWKRLkeagldevsikrrDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRaesaetkvaadsKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYhrsaerklqevvareddlsrriasfkadceekeREIIrerqslsdrkKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKfkalneeksnldltLVSLLKREEAVIEREASLQKKEQKLLVSQetlaskesnEIQKIIANHesalrvkqsEFEAELAIKYKLAEDEIEkkrrawelrdldlGQREesllerehdlevqsralvdkekDLVErshlleekenkliafekEADLKKSLLQKEKEEVNIIKsdlqkslssldekKKQVNCAKDKLEamkseagelsvleiklkeeldVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRkeaervavervvvskslkderdslrqerdamrdqhkrdvdslNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMRefqqisslkekaeKELEQVTleikrldlermeinmdrqrrdrEWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRfntpsvqktasasppslaRFSWIKRFADLVFKHSGEnsvendeeksptsdhedasltinsrkrqpvrysfgepkvilevpseneVVKRTVDLesennqnaaqkckqsvsedgihaarkrrvdvdcvdpsellmqnnkrrkqqedfprnSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTsnnhtqggneEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGgtndhstpahtddvVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECelvqsdnskknkeliayrtrskqkk
Low Complexity Region (SEG)
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCeekereiirerQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADlkksllqkekeeVNIIksdlqkslssldekkkqVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDekreelrkeaervavervvvskslKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIekrreelessfrerekafeeekmrefQQISSlkekaekeleQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVqrqkleeqrqllHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Disordered region (IsUnstruct)
**************************IWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELAS*********************************************ECIASL*******************************************************************************************************************************************************************LTLVSLL****************************************************FEAELAIKYKLAEDEI*****AWEL**********************************************************************************************************SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE*****************************************************************EHSEWFTKIQQERADFLLGIEMQK**********************************************************************************************************************LKIAVDYM*****************************************************************ARFSWIKRFADLVFK************************************************************************************************************************************************************************SILIVDKIIKISEVTCEMTDADNFIN*****************IV*************TDDVVLPYISEIDGMV*****************************************************
Disordered Region (DISOPRED)
**************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
*********AITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK*******************DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEM********************QTSLAHADLGSDQKFDVTNNGDRFNTP***********SLARFSWIKRFADLVFKHSG********************LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE******************HAARKRRVDVDCVDPSELLMQNN*************SEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Disordered Region (DISPRO)
*************SSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTS**************************************RFSWIKRFADLVFKH*******************DASLTINSRKRQPVRYSFGEPKVILEVPSE********D*******NA*******VS****************************************************************************TL****HTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTEC**********************K*NK*****R*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILExxxxxxxxxxxxxxxxxxxxxQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTLLNEREDHILSKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFxxxxxxxxxxxxxxxxxxxxxWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLxxxxxxxxxxxxxxxxxxxxxLQKEKEEVNIIKSDLQKSxxxxxxxxxxxxxxxxxxxxxxxxAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLExxxxxxxxxxxxxxxxxxxxxAERVAVERVVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECELVQSDNSKKNKELIAYRTRSKQKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1118	2.2.26 [Sep-21-2011]
Q9FLH0	1042	Putative nuclear matrix c	yes	no	0.842	0.904	0.510	0.0

>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1050 (51%), Positives = 729/1050 (69%), Gaps = 108/1050 (10%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECY 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E Y
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   ILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL 121
                 ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESL
Sbjct: 75   -----DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESL 129

Query: 122  KKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 181
            KK +G+ KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AA
Sbjct: 130  KKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAA 189

Query: 182  ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKIL 241
            E+LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K L
Sbjct: 190  EALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSL 249

Query: 242  QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTL 301
            QQEHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L
Sbjct: 250  QQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIAL 309

Query: 302  VSLLKREE---------------------------AVIEREASLQKKEQKLLVSQETLAS 334
                KREE                           AV ERE+SL KKEQ+LLV++E +AS
Sbjct: 310  ALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIAS 369

Query: 335  KESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESL 394
            KES  IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ +
Sbjct: 370  KESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLV 429

Query: 395  LEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIK 454
             E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  + 
Sbjct: 430  GEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLD 489

Query: 455  SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETD 514
             +LQ+SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D
Sbjct: 490  LELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEAD 549

Query: 515  KLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK 574
            +L++EKAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK
Sbjct: 550  RLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHK 609

Query: 575  RDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS 634
             DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S
Sbjct: 610  NDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENS 669

Query: 635  FREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 694
             R+REKAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAE
Sbjct: 670  SRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAE 729

Query: 695  LNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLE 754
            L +S+EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE
Sbjct: 730  LKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLE 789

Query: 755  HSQKKISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPS 807
             S +K+SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S
Sbjct: 790  RSWEKVSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSS 839

Query: 808  LARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVI 867
               FSWIKR  +L+FK S E S                           + + + E    
Sbjct: 840  ATPFSWIKRCTNLIFKTSPEKST--------------------------LMHHYEEEGG- 872

Query: 868  LEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNN 927
              VPSE       + LES   +  A     S++ + + A RKRR +    + SE    NN
Sbjct: 873  --VPSEK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNN 922

Query: 928  KRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGG 987
            K+RK   D  +  S+EA     ++   N+PED+H L S +++  P G+            
Sbjct: 923  KKRKH--DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM------------ 967

Query: 988  NEEASILIVDKIIKISEVTCEMTDADNFIN 1017
                  +++ + +KI+ VTCE T+  N + 
Sbjct: 968  ------VVISETVKITRVTCE-TEVTNKVT 990


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.125    0.325 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 372,303,439
Number of Sequences: 539616
Number of extensions: 15909479
Number of successful extensions: 143755
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 5451
Number of HSP's that attempted gapping in prelim test: 82126
Number of HSP's gapped (non-prelim): 28768
length of query: 1118
length of database: 191,569,459
effective HSP length: 128
effective length of query: 990
effective length of database: 122,498,611
effective search space: 121273624890
effective search space used: 121273624890
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 67 (30.4 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1118
359497042	1117	PREDICTED: putative nuclear matrix const	0.968	0.969	0.570	0.0
255579507	1052	Filamin-A-interacting protein, putative	0.928	0.986	0.570	0.0
449451333	1025	PREDICTED: putative nuclear matrix const	0.863	0.941	0.553	0.0
356511984	1048	PREDICTED: putative nuclear matrix const	0.915	0.976	0.533	0.0
356563480	1050	PREDICTED: putative nuclear matrix const	0.916	0.976	0.522	0.0
240256486	1010	branched-chain-amino-acid aminotransfera	0.842	0.932	0.523	0.0
238481650	1042	protein little nuclei4 [Arabidopsis thal	0.842	0.904	0.510	0.0
334188655	1018	branched-chain-amino-acid aminotransfera	0.835	0.917	0.518	0.0
7486519	1421	hypothetical protein F6H11.110 - Arabido	0.833	0.655	0.512	0.0
284807022	925	nuclear matrix constituent protein 2 [Ap	0.724	0.875	0.543	0.0

>gi|359497042|ref|XP_003635406.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] gi|296085718|emb|CBI29518.3| unnamed protein product [Vitis vinifera]

 Score = 1145 bits (2961), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 656/1150 (57%), Positives = 828/1150 (72%), Gaps = 67/1150 (5%)

Query: 1    MASPSSGRLAI--TPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLET 58
            MASP   R +I  TP SRVLQSPLSD++IWKRL++AG DE SIKRRDKAALIAYIAKLE 
Sbjct: 1    MASPQPARFSIAATPGSRVLQSPLSDDAIWKRLRDAGFDEESIKRRDKAALIAYIAKLEA 60

Query: 59   ECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE 118
            E     IF+HQHHMGLLILE+KE A+KYEQIK  AE+AE++ K D+++H SA+AEARKRE
Sbjct: 61   E-----IFDHQHHMGLLILERKEWATKYEQIKTEAESAEIVYKRDQSAHSSALAEARKRE 115

Query: 119  ESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 178
            +SLKK L +EKECIA+LEKA+HE+R E AETKVAA+ K AEA  MVE+AQK+F EAEAKL
Sbjct: 116  DSLKKALEIEKECIANLEKALHEMRQECAETKVAAEIKLAEAHSMVEDAQKRFVEAEAKL 175

Query: 179  HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 238
            HAAE+ QAEA  + R+AERKLQEV AREDDL RR+ SFK+DC+EKE+EII ERQSLS+R+
Sbjct: 176  HAAEAFQAEAICFRRTAERKLQEVEAREDDLRRRLISFKSDCDEKEKEIILERQSLSERQ 235

Query: 239  KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 298
            K +QQ  ERL+D Q LLN+RE++I S+ QEL+R EKELEAS++N+E++ +ALNEEKSNL+
Sbjct: 236  KNVQQGQERLIDGQALLNQREEYIFSRSQELNRLEKELEASKSNIEKELRALNEEKSNLE 295

Query: 299  LTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEF 358
            L L SL  REE V++REA L KKE ++L+ QE +ASKES+E+QK++A HE AL+ +++EF
Sbjct: 296  LKLASLTTREEDVVKREALLNKKEHEILILQEKIASKESDEVQKLMALHEIALKTRKAEF 355

Query: 359  EAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 418
            EAEL  K KL EDEIE KRRA ELR++DL  RE+  LEREH+LEVQSRAL +KEKD+ E+
Sbjct: 356  EAELETKRKLVEDEIEAKRRASELREVDLSNREDFALEREHELEVQSRALAEKEKDVTEK 415

Query: 419  SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 478
             + L+EKE  L A EK+ +L+K  L+KEKEE+N +K +++KSLSSL++KKKQV+ AK+K+
Sbjct: 416  LNSLDEKEKYLNAAEKDVELEKIHLEKEKEEINKMKLNIEKSLSSLEDKKKQVDHAKEKV 475

Query: 479  EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 538
            EAMKSE  EL VLE+KLKEE+DV+RAQKLELM E D+L+ +KA FEAEWE IDEKREELR
Sbjct: 476  EAMKSETSELLVLEMKLKEEIDVIRAQKLELMAEADELRAQKANFEAEWESIDEKREELR 535

Query: 539  KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 598
             EAER+A ER+ +SK LKDERDSL+ E+DAMRDQ+K++V+SL+RERE+FM+KMVHE SEW
Sbjct: 536  NEAERIAEERLAISKFLKDERDSLKLEKDAMRDQYKQEVESLSREREDFMSKMVHERSEW 595

Query: 599  FTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE 658
            F+KIQQERADFLL IEMQK++LENCI+ RREELES F+EREK FE+EKM+E Q ISS+KE
Sbjct: 596  FSKIQQERADFLLDIEMQKKELENCIDNRREELESYFKEREKTFEQEKMKELQHISSMKE 655

Query: 659  KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHA 718
            +  KELE V  E+KRLD ERMEIN+D +RRDREWAEL+NSIEEL +QRQKL++QR+LLHA
Sbjct: 656  RVAKELEHVASEMKRLDAERMEINLDHERRDREWAELSNSIEELKMQRQKLKKQRELLHA 715

Query: 719  DREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLG 778
            DR+EI  + E LKKLEDLKIA D +A++EMQ+S  E SQ+K+  KR+   Q ++ +AD  
Sbjct: 716  DRKEIHTQIEHLKKLEDLKIASDNIALAEMQQSNQEPSQRKVYVKRYYKAQNTIPNADFE 775

Query: 779  SDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSP 838
            S QK +V  NG  FN P++    S+SP +   FSW KR A+L+FK S E       EKS 
Sbjct: 776  SHQKINVVKNGSGFNLPAL--PDSSSPSTATPFSWFKRCAELIFKLSPEKPSIKHGEKSS 833

Query: 839  TSDHEDASLTINSR----------------------KRQPVRYSFGEPKVILEVPSENEV 876
             S+ E+A+LT+                          RQP RY+ GEPKVILEVPS  E 
Sbjct: 834  ISNSENANLTLAGNLDLSDGFDREVHDRNEKTHSISDRQPTRYALGEPKVILEVPSSGED 893

Query: 877  VKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRV----DVDCVDPSELLMQNNKRRKQ 932
            VK    LESE  ++ ++    S SE  + A RKRRV      D VD +    Q NK+R+Q
Sbjct: 894  VKGLHTLESEIKKDTSENSSHSFSEKELLAGRKRRVVNSSSNDWVDTTLEQRQKNKKRRQ 953

Query: 933  QEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEAS 992
            QE         A +   V+ Q               S+  EG     S N TQGG EE +
Sbjct: 954  QES--------AADPCGVSIQ---------------SDAREGQDVSISLNQTQGGAEETN 990

Query: 993  ILIVDKIIKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDD 1052
            +LI D+IIKISEVTCE      F NQ K +  QNSV E  QDI + GGTN  +     + 
Sbjct: 991  LLITDEIIKISEVTCENV---VFDNQAKPNALQNSVVELGQDI-QHGGTNGLADSNAENC 1046

Query: 1053 VVLPYISEIDGMVQEKQMGNVKDLTECGQAQNEMGEHKLECEL-----VQSDNSKKNKEL 1107
            V+       + + +E    +V  + E  Q Q+E    K + EL      +SD+ KK  E 
Sbjct: 1047 VLSSDFKAQEKIGKEVLFVDVGQVIEHSQPQDESISEKSQQELQEQGVPKSDDDKKLSEK 1106

Query: 1108 IAYRTRSKQK 1117
            +  R RS+QK
Sbjct: 1107 VGRRMRSRQK 1116

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579507|ref|XP_002530596.1| Filamin-A-interacting protein, putative [Ricinus communis] gi|223529844|gb|EEF31776.1| Filamin-A-interacting protein, putative [Ricinus communis]

 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 639/1120 (57%), Positives = 801/1120 (71%), Gaps = 82/1120 (7%)

Query: 1    MASP----SSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKL 56
            MASP    S   L+ITP +RVL++PLSDE+IWKRLKEAG DE SIKRRDKAALI+YI KL
Sbjct: 1    MASPITPGSVRGLSITPGARVLKTPLSDETIWKRLKEAGFDEESIKRRDKAALISYIVKL 60

Query: 57   ETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARK 116
            E+E Y L     QHHMGLLILE+KELAS  EQIK SAE  EL  K D+A+HLSA+AEARK
Sbjct: 61   ESEIYDL-----QHHMGLLILERKELASNCEQIKTSAETTELKHKRDQAAHLSALAEARK 115

Query: 117  REESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEA 176
            REESLKK LGVEKECIAS+EKA+HE+RAESAE KVAAD K AEA  MVE+AQKK+ +AEA
Sbjct: 116  REESLKKALGVEKECIASIEKALHEMRAESAEIKVAADCKVAEAHSMVEDAQKKYTDAEA 175

Query: 177  KLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSD 236
            KLHAAE+LQAEA +Y R+AERKLQE  AREDDLSRRI++F+ADC+ KE+EI  ERQ+LS+
Sbjct: 176  KLHAAEALQAEATQYRRAAERKLQEAQAREDDLSRRISTFRADCDAKEKEIDLERQTLSE 235

Query: 237  RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSN 296
            R+K+LQQEHER+LD Q LLN+RED+I SK QEL   EKELEAS+ +V+E+ +ALN+EKS 
Sbjct: 236  RRKLLQQEHERVLDGQALLNQREDYIASKSQELDCLEKELEASKGSVQEELRALNDEKSK 295

Query: 297  LDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQS 356
            L +T+ SL +RE+AV+EREA L K+EQ LL+ QE LASKES EIQK+IANHE+ LR ++ 
Sbjct: 296  LGVTVASLSQREQAVVEREALLNKREQDLLIMQEKLASKESVEIQKVIANHETLLRTRKL 355

Query: 357  EFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 416
            EFEAEL +  KLAEDEIE KRRAWELR++DL QREE L E+EHDLEV+SR L D EKD+ 
Sbjct: 356  EFEAELEMNRKLAEDEIEAKRRAWELREVDLSQREELLNEKEHDLEVKSRVLADLEKDVT 415

Query: 417  ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 476
            E+ + L+EKE  L A EKE +L+++LL ++K E+N +K D++KSL+SL+ +KKQV+CAK+
Sbjct: 416  EKVNFLDEKERCLNAAEKENELRRALLDQQKNEINKMKLDIEKSLNSLENEKKQVDCAKE 475

Query: 477  KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREE 536
            KLE MK+E  EL+VLE KLKEE+D++RAQK+ELM E D+L++EKAKFEAEWE+IDEKREE
Sbjct: 476  KLETMKNETNELAVLETKLKEEVDMLRAQKVELMAEEDRLKVEKAKFEAEWELIDEKREE 535

Query: 537  LRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 596
            L+ EAERVA ER  V + LKD RDSLR E++ +R+QHK DV+ LN EREEFMNKMV E S
Sbjct: 536  LQIEAERVAEERQSVCRLLKDGRDSLRVEKETIREQHKHDVELLNHEREEFMNKMVQERS 595

Query: 597  EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSL 656
            EWF KIQ+E ADFLLGIEMQKR+LEN IEKRREE+E   R++EKAFE EK  E + ISSL
Sbjct: 596  EWFNKIQKEHADFLLGIEMQKRELENSIEKRREEIECYLRDQEKAFELEKKNELEHISSL 655

Query: 657  KEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 716
            +EKA KELEQ  LE+K+LD ERMEIN+DR RRD EWA LN SIEEL  Q QKLE+QR+LL
Sbjct: 656  REKAAKELEQAALEMKKLDSERMEINLDRDRRDIEWAVLNKSIEELKGQTQKLEKQRELL 715

Query: 717  HADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHAD 776
            HA+REE+ A+ E LKKLEDLK+ +D M +++MQ+S +E SQKKISA R L Q++++ +AD
Sbjct: 716  HAEREEVCAQIEHLKKLEDLKLMLDNMELAKMQQSNMESSQKKISAIRDLRQESTVKNAD 775

Query: 777  LGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEK 836
              S ++ +  N+GD  ++PS+QK   +  P  ARFSWIKR  +L+FK S E  +   EE+
Sbjct: 776  KISYKRVENGNSGDVLDSPSMQKLDVSPSPGSARFSWIKRCTELIFKGSPEKPLLKSEEE 835

Query: 837  SPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQKCK 896
            S  S+HE+ASL            S G+                   L+S N         
Sbjct: 836  SLISNHENASLI-----------SAGK-------------------LDSSN--------- 856

Query: 897  QSVSEDGIHAARKRRVD---VD-CVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAE 952
               SE  +   RKRRV    +D   DP     QNNKRRKQQED     S +A NH   + 
Sbjct: 857  -GFSEQVLKPGRKRRVKNSRLDGSADPWPEQRQNNKRRKQQEDAAVILSPDANNHSVTSN 915

Query: 953  QSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDA 1012
            Q N P+ QH LT ++            S NH Q         + ++IIKISEVTCE+   
Sbjct: 916  QENAPKTQH-LTEED------------SENHVQ---------VAERIIKISEVTCEIAHI 953

Query: 1013 DNFINQEKIDGSQNSVAESVQD--IVKVGGTNDHSTPAHTDDVVLPYISEIDGMVQEKQM 1070
            DNF NQEK++  Q  + E+  D   V+ GGTN H+   + D  + P   E   M+++ Q+
Sbjct: 954  DNFPNQEKVE--QQLIPEATCDHSAVQDGGTNGHANQGYVDHSLQPCGLEAPEMLKD-QL 1010

Query: 1071 GNVKDLTECGQAQNEMG--EHKLECELVQSDNSKKNKELI 1108
            GN   +TE  QA + +   EH +    V    +  NK L+
Sbjct: 1011 GNDGRVTEQQQAGSNISLYEHYISINCVSFAYNIMNKLLL 1050

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451333|ref|XP_004143416.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus]

 Score = 1014 bits (2621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/1045 (55%), Positives = 749/1045 (71%), Gaps = 80/1045 (7%)

Query: 1    MASP-------SSGR-LAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAY 52
            MASP       SSG+ L++TP SRVLQ+PL+DE+IW+RLKEAG DE SIKRRDKAALIAY
Sbjct: 1    MASPQSAGLTLSSGKGLSLTPGSRVLQTPLADEAIWRRLKEAGFDEESIKRRDKAALIAY 60

Query: 53   IAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIA 112
            IAKLE E     +F+HQHHMGLLILE+KELAS YEQ+K+ AE AEL+ + D+A+HLSA+ 
Sbjct: 61   IAKLEAE-----MFDHQHHMGLLILERKELASDYEQMKSKAETAELMYRRDQAAHLSALT 115

Query: 113  EARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFA 172
            EA+KRE++LKK +G+++EC+ASLEKA+HE+R ESAE KVAA+S+ AEAR M+E+AQKKF 
Sbjct: 116  EAKKREDNLKKAIGIKEECVASLEKALHEMRLESAEIKVAAESRLAEARIMMEDAQKKFV 175

Query: 173  EAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQ 232
            EAEAKLHAAESLQAE+NR +R+AERKL EV AREDDL RR+A FK+DC++K  EI+ ERQ
Sbjct: 176  EAEAKLHAAESLQAESNRCNRAAERKLHEVEAREDDLRRRMACFKSDCDKKGEEIVLERQ 235

Query: 233  SLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 292
            SLS+R+K LQQEHERLLD Q LLN+RE++ILSK QELSR EKELE  RA++E + +A+++
Sbjct: 236  SLSERQKALQQEHERLLDGQALLNQREEYILSKTQELSRSEKELEELRASIENERRAVHD 295

Query: 293  EKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALR 352
            EKS + L   SL KREEAV   E  + +++Q+LLV +E +A+KE+NEIQK++ANHES LR
Sbjct: 296  EKSKMQLYEASLSKREEAVNRMEIMMNRRQQELLVLEEKIATKETNEIQKVVANHESTLR 355

Query: 353  VKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKE 412
             K S+F+AEL IK K  EDEIE KRRAWELR++DL QR+E +LE+E+DLEVQSR+LV KE
Sbjct: 356  TKISDFDAELQIKQKAVEDEIESKRRAWELREMDLKQRDEQILEKEYDLEVQSRSLVAKE 415

Query: 413  KDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVN 472
            K++ E S  L+EKE  L A E+E +L K LLQKEK+E + +K DLQ SL SL++++KQV+
Sbjct: 416  KEVEELSKSLDEKEKNLKALEQELELSKVLLQKEKDECSKMKRDLQCSLDSLEDRRKQVD 475

Query: 473  CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 532
            CAKDKLEA +SE  ELS+LE+KLKEELD VR QKLELM E DKL +EKAKFEAEWEMIDE
Sbjct: 476  CAKDKLEAFRSETNELSLLEMKLKEELDSVRVQKLELMDEADKLMVEKAKFEAEWEMIDE 535

Query: 533  KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 592
            KREELR EAE +A ER+ VSK +KDERD LR ER+ MR Q K D ++L+REREEF+NKM 
Sbjct: 536  KREELRTEAEILAAERLAVSKFIKDERDGLRLEREVMRKQFKNDRETLSREREEFLNKMT 595

Query: 593  HEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 652
             E SEW  K+QQER D L+ +E QK++LENC+E+RREELE   RE+ K FE+EK  E  +
Sbjct: 596  CERSEWLNKMQQERKDLLMDVEAQKKELENCLEQRREELEGQLREKLKNFEQEKKNELDK 655

Query: 653  ISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 712
            I+ LK+KA K+LE+V LE K+L+ ERMEIN+DR+RR+REWAELNNSIEEL VQR+KLE+Q
Sbjct: 656  INFLKDKATKDLEEVALETKKLETERMEINLDRERRNREWAELNNSIEELKVQREKLEKQ 715

Query: 713  RQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSL 772
            R+LLHADREEI A+ ERLKK E+LK+A+D MAV+EM +S L+ +Q  IS  R        
Sbjct: 716  RELLHADREEILADIERLKKFENLKVALDNMAVAEMNQSDLDVAQ-PISYPRRRPLVRDA 774

Query: 773  AHADLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVEN 832
             H       + D     + F++PSV K     PP+  RFSWIKR ++L+FK S E     
Sbjct: 775  EH-------QIDTQKITNGFDSPSVLKVDGDLPPTSTRFSWIKRCSELIFKQSPER---- 823

Query: 833  DEEKSPTS-------DHEDASLTINSR---------------------KRQPVRYSFGEP 864
              E++PT        +  D S +I+ +                     +RQ V+Y+ GEP
Sbjct: 824  --ERAPTRYPVKNPINQADQSSSISGQLFQSPEFEMDRGNEKSQRTITERQDVKYAIGEP 881

Query: 865  KVILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDP---SE 921
            KVI+EVP  N+ +     LESE   +       ++S+  +   +KRR   +   P    +
Sbjct: 882  KVIVEVPPANKNMNGVPVLESEIVDDV------TLSDHRVLTGKKRRA-TNITHPDSLGQ 934

Query: 922  LLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSN 981
            L  +NN ++++QE+   + +E+  +    A Q N+PED            P+   + T N
Sbjct: 935  LEFENNNKKQRQEEISGDPTEDDSSCPEEATQMNMPED------------PKAFVSSTDN 982

Query: 982  NHTQGGNEEASILIVDKIIKISEVT 1006
               Q   +EA ++IV   I I EVT
Sbjct: 983  ---QENAKEAEVVIVSTDINIIEVT 1004

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511984|ref|XP_003524701.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]

 Score = 1001 bits (2588), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/1099 (53%), Positives = 777/1099 (70%), Gaps = 76/1099 (6%)

Query: 1    MASP--SSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLET 58
            +++P  SS  L+ITP SRVL+SPLSDE IWKRL++AG DE SIK +DKAALIAYIAKLE 
Sbjct: 3    LSTPNSSSKHLSITPGSRVLRSPLSDEQIWKRLRDAGFDEESIKHKDKAALIAYIAKLEA 62

Query: 59   ECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE 118
            E     I++HQHHMGLLILEKK+LASKYEQ+KA AE++EL+ KHD A + SA+ E+RKRE
Sbjct: 63   E-----IYDHQHHMGLLILEKKDLASKYEQVKALAESSELMHKHDSAMNKSALTESRKRE 117

Query: 119  ESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 178
            ESLKKT+ V+  CIASLEKA+HE+R ESAETKVAA+SKFAEA  +++ AQ+KF EAEAK+
Sbjct: 118  ESLKKTVSVKDACIASLEKALHELRTESAETKVAAESKFAEAHQLIDEAQRKFTEAEAKV 177

Query: 179  HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 238
             AAESLQAEANRYH  AERKL++V ARE++L R+I SFK+DC+EK++ +I ERQSLS+R+
Sbjct: 178  RAAESLQAEANRYHNVAERKLRDVEARENNLRRQIISFKSDCDEKDKAMILERQSLSERQ 237

Query: 239  KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 298
            K LQQE ERLL +Q+LLN+RE+H LS+ QEL+R ++ELE ++  +E++ +AL++EK+ L 
Sbjct: 238  KGLQQEQERLLQSQSLLNQREEHFLSRSQELNRLQRELEDTKGKIEKEHEALHDEKTTLK 297

Query: 299  LTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEF 358
            L   +L++REE + + ++ L KKEQ+LL  Q  L+++ES+E QK++A  E+ALR K+   
Sbjct: 298  LKEATLIQREEELTKWKSELSKKEQELLEFQAKLSNRESDETQKVVAGQEAALRTKKYNL 357

Query: 359  EAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 418
            E EL +  KL E+EIE+KRRAWEL+++DL   E+ +L+R+H+LEV SR+L +KEKDL + 
Sbjct: 358  EVELQMLRKLVENEIEEKRRAWELKEVDLKHCEDQILQRQHELEVLSRSLSEKEKDLKDL 417

Query: 419  SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 478
            S  LEEK+  L A EK+ +L K LLQKEK++V     DLQKSL+SL++K +QV+  K+KL
Sbjct: 418  SSALEEKDQMLSASEKKFELNKVLLQKEKDDVEQANQDLQKSLASLEDKIRQVDIDKEKL 477

Query: 479  EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 538
            EAMKSE G++S+LE+KLKEE+D+VR+QKLEL+ E DKL+ EKAKFEA+WE++DEK+EELR
Sbjct: 478  EAMKSETGDMSILEVKLKEEIDLVRSQKLELLAEADKLKTEKAKFEADWELLDEKKEELR 537

Query: 539  KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 598
            KEAE +A ER  VS  +K+ERD LR+E++ +R+Q+ +D+  L  ERE+FMNKM HEH+EW
Sbjct: 538  KEAEFIAKEREAVSTFIKNERDQLREEKENLRNQYNQDLGYLASEREKFMNKMAHEHAEW 597

Query: 599  FTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE 658
            F K+QQERADFL  IE+QK++L N IEKRREE+ESS +EREKAFEEEK  E Q I++LKE
Sbjct: 598  FGKMQQERADFLREIELQKQELNNLIEKRREEVESSLKEREKAFEEEKNTELQYINALKE 657

Query: 659  KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHA 718
            KA KELEQV+LE+KRL  ER EIN+DR+RR+REWAEL   IEEL VQR KL +QR+LLHA
Sbjct: 658  KATKELEQVSLEMKRLQTERAEINLDRERRNREWAELTKCIEELEVQRDKLRKQRELLHA 717

Query: 719  DREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLG 778
            DR EI A++E LKKLEDLK   D  A++EM +S +E +QKKISA+++L  Q SL      
Sbjct: 718  DRIEIYAQTEELKKLEDLKAVSDDNAITEMLKSDMESNQKKISARKNLKHQ-SLT----- 771

Query: 779  SDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSP 838
              Q  D  NNG  F+TP VQK+   SPPS  RFSWIKR  +L+F++S E  +E +E+   
Sbjct: 772  --QGGDKINNG--FDTPLVQKSP-VSPPSPVRFSWIKRCTELIFRNSPEKPLERNEDSLM 826

Query: 839  TSD-----------HEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE- 886
             SD             D SL  N  K Q + ++F EPKVI+EVPS ++   R  ++ESE 
Sbjct: 827  GSDTGNVCNGKQYSENDESLG-NIGKGQQIGFAFEEPKVIVEVPSLDDA--RRSEIESEA 883

Query: 887  ---NNQNAAQKCKQSVSEDGIHAARKRR----VDVDCVDPSELLMQNNKRRKQQEDFPRN 939
               N ++A       +  DG HA R++R    V     DP   + QN K R         
Sbjct: 884  KDVNGKSAL------LLPDGHHAGRRKRGRGNVTDKVGDPLVDVGQNKKSR--------- 928

Query: 940  SSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKI 999
                       AEQSN          K +S V +    LTS+N TQG  EE  +++VDK+
Sbjct: 929  -----------AEQSN---------EKVQSGVSKVQQVLTSSNQTQGNTEETRVVMVDKV 968

Query: 1000 IKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYIS 1059
            I +SEVT E  DA   ++QE  D  Q+    + Q I+  G T D S      + +LP  S
Sbjct: 969  IHVSEVTSEKLDALPILSQEPRDNMQSPTFGADQCILH-GETIDRSNSKTRQEDILPCAS 1027

Query: 1060 EIDGMVQEKQMGNVKDLTE 1078
             + G  +E   GN   ++E
Sbjct: 1028 SVLGSTEEISKGNNDQVSE 1046

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563480|ref|XP_003549990.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max]

 Score =  971 bits (2511), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 574/1099 (52%), Positives = 773/1099 (70%), Gaps = 74/1099 (6%)

Query: 1    MASP--SSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLET 58
            +++P  SS  L+ITP SRVL++PLSDE IWKRL++AG DE SIK +DKAALIAYIAKLE 
Sbjct: 3    LSTPNSSSKHLSITPGSRVLRNPLSDEQIWKRLRDAGFDEESIKHKDKAALIAYIAKLEA 62

Query: 59   ECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE 118
            E     I++HQHHMGLLILEKK+LASKYEQ+KA AE++EL+ KHD   + SA+ E++KRE
Sbjct: 63   E-----IYDHQHHMGLLILEKKDLASKYEQVKALAESSELMHKHDSTMNKSALTESKKRE 117

Query: 119  ESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 178
            ESLKKT+ ++  CIASLEKA+HE+R ESAETKVAA+SKF EAR +++ AQKKF EAEAK+
Sbjct: 118  ESLKKTVSIKDACIASLEKALHELRTESAETKVAAESKFVEARQLIDEAQKKFTEAEAKV 177

Query: 179  HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK 238
             AAESLQAEA RYH  AERKL +V ARED+L R+I SFK+DC+EK++E+I ERQSLS+R+
Sbjct: 178  RAAESLQAEAKRYHNVAERKLHDVEAREDNLRRQIISFKSDCDEKDKEMIIERQSLSERQ 237

Query: 239  KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 298
            K LQQE ERLL +Q+LLN+RE+H LS+ QEL+R ++ELE ++   E++ +AL +EK+ L 
Sbjct: 238  KGLQQEQERLLQSQSLLNQREEHFLSRSQELNRLQRELEDTKVKFEKEHEALYDEKTTLK 297

Query: 299  LTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEF 358
            L   +L+++EE + + ++ L KKEQ+LL  Q  L+++ES++ QK++A+ E+ALR K+   
Sbjct: 298  LKEATLIQQEEELAKWKSELSKKEQELLEFQAKLSNRESDKTQKVVASQEAALRTKKYNL 357

Query: 359  EAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 418
            E EL ++ KL E+EIE+KRRAWEL+++DL   E+ +LER+H+LEV SR+L +KEKDL + 
Sbjct: 358  EVELQMQRKLVENEIEEKRRAWELKEVDLKHCEDQILERQHELEVLSRSLSEKEKDLKDL 417

Query: 419  SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 478
            S  LEEK+ +L A EK+ +L K LLQKEK+ V   K D+QKSL SL++K +QV+  K+KL
Sbjct: 418  SSALEEKDQRLSAAEKDFELNKVLLQKEKDHVEQAKQDVQKSLESLEDKIRQVDMEKEKL 477

Query: 479  EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 538
            EAMKSE G+LS+LE+KLKEE+D+VR+QKLEL+ E +KL+ EKAKFEAEWE++DEK+EELR
Sbjct: 478  EAMKSETGDLSILEVKLKEEIDLVRSQKLELLAEAEKLKAEKAKFEAEWELLDEKKEELR 537

Query: 539  KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 598
            +EAE +A ER  VS  +++ERD LR+E++ + +Q+ +D+  L  ERE+FMNKM HEH+EW
Sbjct: 538  EEAEFIAKEREAVSTFIRNERDQLREEKENLHNQYNQDLGFLASEREKFMNKMAHEHAEW 597

Query: 599  FTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE 658
            F K+QQERADFL  IE+QK++L N IEKRREE+ES  +EREKAFEEEK  E Q I++LKE
Sbjct: 598  FGKMQQERADFLREIELQKQELNNLIEKRREEVESYLKEREKAFEEEKNTELQYINALKE 657

Query: 659  KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHA 718
            KA KELEQV+LE+KRL  ER EIN+DR+RR+REWAEL N IEEL VQR KL++QR+LLHA
Sbjct: 658  KAAKELEQVSLEMKRLQTERAEINLDRERRNREWAELTNCIEELEVQRDKLQKQRELLHA 717

Query: 719  DREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLG 778
            DR EI A++E LKKLEDLK   D  A++EM +S +E +QKKISA+++L  Q SL H   G
Sbjct: 718  DRIEIYAQTEELKKLEDLKAVSDDNAITEMLKSDMESNQKKISARKNLKHQ-SLTH---G 773

Query: 779  SDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDEEKSP 838
             D+     +NG  F+TP VQK+ + SPPS  RFSWIKR  +L+F++S E  +E +E+   
Sbjct: 774  GDR----ISNG--FDTPLVQKS-TVSPPSPVRFSWIKRCTELIFRNSPERPLERNEDFLM 826

Query: 839  TSDHEDAS----------LTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE-- 886
             SD  + S             N  KRQ + ++  EPKVI+EVPS ++   R  ++ESE  
Sbjct: 827  GSDTGNVSNLKKHLENDEPLGNIGKRQEIGFALEEPKVIVEVPSLDDA--RRSEIESEAK 884

Query: 887  --NNQNAAQKCKQSVSEDGIHAARKRRVDVDCVD----PSELLMQNNKRRKQQEDFPRNS 940
              N ++A       +  DG  A R +R   +  D    P   + QN K R +        
Sbjct: 885  DVNGKSAL------LIPDGHRAGRLKRRRGNMTDKVGNPFVDVGQNKKSRAE-------- 930

Query: 941  SEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILI-VDKI 999
                       EQ+N          K +S V +    LTS+N TQG  EE  ++I VDK+
Sbjct: 931  -----------EQTN---------EKVQSGVSKVQQVLTSSNQTQGNTEETRVVIMVDKV 970

Query: 1000 IKISEVTCEMTDADNFINQEKIDGSQNSVAESVQDIVKVGGTNDHSTPAHTDDVVLPYIS 1059
            I +SEVT E  D    ++QE  D   +    + Q  +  G T D S      + VLP  S
Sbjct: 971  IHVSEVTSEKLDVLPILSQEPRDNFPSPTLGADQCNLH-GETIDQSNYKTRQEDVLPCAS 1029

Query: 1060 EIDGMVQEKQMGNVKDLTE 1078
             + G  +E   GN + ++E
Sbjct: 1030 SVLGSTEEISKGNNEQVSE 1048

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240256486|ref|NP_201378.5| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|334188653|ref|NP_001190626.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010720|gb|AED98103.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010722|gb|AED98105.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana]

 Score =  927 bits (2395), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1023 (52%), Positives = 729/1023 (71%), Gaps = 81/1023 (7%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECY 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E Y
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   ILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL 121
                 ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESL
Sbjct: 75   -----DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESL 129

Query: 122  KKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 181
            KK +G+ KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AA
Sbjct: 130  KKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAA 189

Query: 182  ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKIL 241
            E+LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K L
Sbjct: 190  EALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSL 249

Query: 242  QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTL 301
            QQEHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L
Sbjct: 250  QQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIAL 309

Query: 302  VSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAE 361
                KREEAV ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAE
Sbjct: 310  ALCAKREEAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAE 369

Query: 362  LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHL 421
            L  K K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  
Sbjct: 370  LECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFN 429

Query: 422  LEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM 481
            L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+SL+SL++K+K+V+ A  KLEA+
Sbjct: 430  LDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEAL 489

Query: 482  KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEA 541
            KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID KREELRKEA
Sbjct: 490  KSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEA 549

Query: 542  ERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTK 601
            E +  +R   S  LKDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +K
Sbjct: 550  EYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSK 609

Query: 602  IQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAE 661
            IQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+REKAFE+EK  E ++I SLKE AE
Sbjct: 610  IQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAE 669

Query: 662  KELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADRE 721
            KELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL VQR+KLE QR +L A+R+
Sbjct: 670  KELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERD 729

Query: 722  EIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQ 781
            EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K+SA   L Q+       +  D 
Sbjct: 730  EIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKV------VSRDD 780

Query: 782  KFD-------VTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENSVENDE 834
            + D       V+N+ D +N+ S+++    +P S   FSWIKR  +L+FK S E S     
Sbjct: 781  ELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKST---- 835

Query: 835  EKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESENNQNAAQK 894
                                  + + + E      VPSE       + LES   +  A  
Sbjct: 836  ----------------------LMHHYEEEGG---VPSEK------LKLESSRREEKAYT 864

Query: 895  CKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAINHGAVAEQS 954
               S++ + + A RKRR +    + SE    NNK+RK   D  +  S+EA     ++   
Sbjct: 865  EGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH--DVTQKYSDEADTQSVISSPQ 920

Query: 955  NLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTCEMTDADN 1014
            N+PED+H L S +++  P G+                  +++ + +KI+ VTCE T+  N
Sbjct: 921  NVPEDKHELPS-SQTQTPSGM------------------VVISETVKITRVTCE-TEVTN 960

Query: 1015 FIN 1017
             + 
Sbjct: 961  KVT 963

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238481650|ref|NP_001154799.1| protein little nuclei4 [Arabidopsis thaliana] gi|26397174|sp|Q9FLH0.1|NMCP_ARATH RecName: Full=Putative nuclear matrix constituent protein 1-like protein; Short=NMCP1-like gi|10177335|dbj|BAB10684.1| nuclear matrix constituent protein 1 (NMCP1)-like [Arabidopsis thaliana] gi|332010721|gb|AED98104.1| protein little nuclei4 [Arabidopsis thaliana]

 Score =  910 bits (2353), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1050 (51%), Positives = 729/1050 (69%), Gaps = 108/1050 (10%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECY 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E Y
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   ILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL 121
                 ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESL
Sbjct: 75   -----DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESL 129

Query: 122  KKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 181
            KK +G+ KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AA
Sbjct: 130  KKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAA 189

Query: 182  ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKIL 241
            E+LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K L
Sbjct: 190  EALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSL 249

Query: 242  QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTL 301
            QQEHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L
Sbjct: 250  QQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIAL 309

Query: 302  VSLLKREE---------------------------AVIEREASLQKKEQKLLVSQETLAS 334
                KREE                           AV ERE+SL KKEQ+LLV++E +AS
Sbjct: 310  ALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIAS 369

Query: 335  KESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESL 394
            KES  IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ +
Sbjct: 370  KESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLV 429

Query: 395  LEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIK 454
             E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  + 
Sbjct: 430  GEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLD 489

Query: 455  SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETD 514
             +LQ+SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D
Sbjct: 490  LELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEAD 549

Query: 515  KLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK 574
            +L++EKAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK
Sbjct: 550  RLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHK 609

Query: 575  RDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS 634
             DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S
Sbjct: 610  NDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENS 669

Query: 635  FREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 694
             R+REKAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAE
Sbjct: 670  SRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAE 729

Query: 695  LNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLE 754
            L +S+EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE
Sbjct: 730  LKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLE 789

Query: 755  HSQKKISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPS 807
             S +K+SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S
Sbjct: 790  RSWEKVSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSS 839

Query: 808  LARFSWIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVI 867
               FSWIKR  +L+FK S E S                           + + + E    
Sbjct: 840  ATPFSWIKRCTNLIFKTSPEKST--------------------------LMHHYEEEGG- 872

Query: 868  LEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNN 927
              VPSE       + LES   +  A     S++ + + A RKRR +    + SE    NN
Sbjct: 873  --VPSEK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNN 922

Query: 928  KRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGG 987
            K+RK   D  +  S+EA     ++   N+PED+H L S +++  P G+            
Sbjct: 923  KKRKH--DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM------------ 967

Query: 988  NEEASILIVDKIIKISEVTCEMTDADNFIN 1017
                  +++ + +KI+ VTCE T+  N + 
Sbjct: 968  ------VVISETVKITRVTCE-TEVTNKVT 990

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334188655|ref|NP_001190627.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana] gi|332010724|gb|AED98107.1| branched-chain-amino-acid aminotransferase 5 [Arabidopsis thaliana]

 Score =  909 bits (2350), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 530/1022 (51%), Positives = 722/1022 (70%), Gaps = 88/1022 (8%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECY 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E Y
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   ILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL 121
                 ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESL
Sbjct: 75   -----DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESL 129

Query: 122  KKTLGVEKECI--------ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAE 173
            KK +G+ K+          + LEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+
Sbjct: 130  KKDVGIAKDLFIDFVLFFFSQLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLAD 189

Query: 174  AEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQS 233
            AEAK+ AAE+LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+
Sbjct: 190  AEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQT 249

Query: 234  LSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEE 293
            L++R+K LQQEHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++
Sbjct: 250  LNERRKSLQQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDK 309

Query: 294  KSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRV 353
            KSNL++ L    KREEAV ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR 
Sbjct: 310  KSNLEIALALCAKREEAVSERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRK 369

Query: 354  KQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEK 413
            ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEK
Sbjct: 370  RKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEK 429

Query: 414  DLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 473
            D+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+SL+SL++K+K+V+ 
Sbjct: 430  DITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDS 489

Query: 474  AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 533
            A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID K
Sbjct: 490  ATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVK 549

Query: 534  REELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH 593
            REELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV 
Sbjct: 550  REELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVE 609

Query: 594  EHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI 653
            EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+REKAFE+EK  E ++I
Sbjct: 610  EHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERI 669

Query: 654  SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQR 713
             SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+EEL VQR+KLE QR
Sbjct: 670  QSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQR 729

Query: 714  QLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLA 773
             +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K+SA   L Q+    
Sbjct: 730  HMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKV--- 783

Query: 774  HADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSG 826
               +  D + D       V+N+ D +N+ S+++    +P S   FSWIKR  +L+FK S 
Sbjct: 784  ---VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSP 839

Query: 827  ENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPSENEVVKRTVDLESE 886
            E S                           + + + E      VPSE       + LES 
Sbjct: 840  EKST--------------------------LMHHYEEEGG---VPSEK------LKLESS 864

Query: 887  NNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQQEDFPRNSSEEAIN 946
              +  A     S++ + + A RKRR +    + SE    NNK+RK   D  +  S+EA  
Sbjct: 865  RREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH--DVTQKYSDEADT 920

Query: 947  HGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVT 1006
               ++   N+PED+H L S +++  P G+                  +++ + +KI+ VT
Sbjct: 921  QSVISSPQNVPEDKHELPS-SQTQTPSGM------------------VVISETVKITRVT 961

Query: 1007 CE 1008
            CE
Sbjct: 962  CE 963

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7486519|pir||T05892 hypothetical protein F6H11.110 - Arabidopsis thaliana gi|2827709|emb|CAA16682.1| predicted protein [Arabidopsis thaliana]

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 535/1043 (51%), Positives = 726/1043 (69%), Gaps = 111/1043 (10%)

Query: 2    ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETECY 61
            ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E Y
Sbjct: 15   STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62   ILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL 121
                 ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESL
Sbjct: 75   -----DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESL 129

Query: 122  KKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 181
            KK +G+ KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AA
Sbjct: 130  KKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAA 189

Query: 182  ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKIL 241
            E+LQAEANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K L
Sbjct: 190  EALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSL 249

Query: 242  QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTL 301
            QQEHERLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L
Sbjct: 250  QQEHERLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIAL 309

Query: 302  VSLLKREE---------------------------AVIEREASLQKKEQKLLVSQETLAS 334
                KREE                           AV ERE+SL KKEQ+LLV++E +AS
Sbjct: 310  ALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIAS 369

Query: 335  KESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESL 394
            KES  IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ +
Sbjct: 370  KESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLV 429

Query: 395  LEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIK 454
             E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  + 
Sbjct: 430  GEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLD 489

Query: 455  SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETD 514
             +LQ+SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D
Sbjct: 490  LELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEAD 549

Query: 515  KLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK 574
            +L++EKAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK
Sbjct: 550  RLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHK 609

Query: 575  RDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS 634
             DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S
Sbjct: 610  NDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENS 669

Query: 635  FREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 694
             R+REKAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAE
Sbjct: 670  SRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAE 729

Query: 695  LNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLE 754
            L +S+EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE
Sbjct: 730  LKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLE 789

Query: 755  HSQKKISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPS 807
             S +K+SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S
Sbjct: 790  RSWEKVSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSS 839

Query: 808  LARFSWIKRFADLVFKHSGENS--VENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPK 865
               FSWIKR  +L+FK S E S  + + EE+                             
Sbjct: 840  ATPFSWIKRCTNLIFKTSPEKSTLMHHYEEEGG--------------------------- 872

Query: 866  VILEVPSENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQ 925
                VPSE       + LES   +  A     S++ + + A RKRR +    + SE    
Sbjct: 873  ----VPSEK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PS 920

Query: 926  NNKRRKQQEDFPRNSSEEAINHGAVAEQSNLPEDQHTLTSKNKSNVPEGLHTLTSNNHTQ 985
            NNK+RK   D  +  S+EA     ++   N+PED+H L S +++  P G+          
Sbjct: 921  NNKKRKH--DVTQKYSDEADTQSVISSPQNVPEDKHELPS-SQTQTPSGM---------- 967

Query: 986  GGNEEASILIVDKIIKISEVTCE 1008
                    +++ + +KI+ VTCE
Sbjct: 968  --------VVISETVKITRVTCE 982

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284807022|dbj|BAI67716.1| nuclear matrix constituent protein 2 [Apium graveolens]

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/833 (54%), Positives = 623/833 (74%), Gaps = 23/833 (2%)

Query: 1   MASP-----SSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAK 55
           M++P      S +  +T S RVL++  SD+ IWKRL+EAG DE SIKRRDKA+LIAYI K
Sbjct: 1   MSTPRLTVIQSDKTTVTSSPRVLRN--SDDDIWKRLEEAGFDEDSIKRRDKASLIAYITK 58

Query: 56  LETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEAR 115
           LE+E     I++HQ+ MGLLI+E+KE  SK+EQ +A+  +AEL++KHD+ASH++A+AEA+
Sbjct: 59  LESE-----IYDHQYQMGLLIMERKEWVSKFEQTEAALNSAELMRKHDKASHVAALAEAK 113

Query: 116 KREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAE 175
           KRE++LKK + +E+EC+A++EK +HE+RAE AETKV+ADSK AEAR M+E+A KK +EA+
Sbjct: 114 KREDNLKKAIEIERECLANIEKTLHELRAEYAETKVSADSKLAEARSMMEDALKKLSEAD 173

Query: 176 AKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLS 235
           AK+ AAESL+AEA R+HR+AERKL EV AREDDL RR ASFK +C+ K+ E + ERQSL 
Sbjct: 174 AKMLAAESLEAEAGRFHRAAERKLHEVEAREDDLRRRAASFKTECDTKDEEFLHERQSLC 233

Query: 236 DRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS 295
           +R+K LQQ  +RL+D Q LLN+RE HI  + QEL+RKEKELEAS+  + E+ + L EE++
Sbjct: 234 ERQKSLQQSQQRLVDGQELLNKRESHIFDRTQELNRKEKELEASKLKLGEELQVLAEEQA 293

Query: 296 NLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQ 355
           NL +   SL  REE V +RE  ++K+E+ +LV Q+ L  KES  IQ+++AN+E++L  K+
Sbjct: 294 NLKIKASSLSLREEVVTKRECEVKKREEGVLVLQDKLEKKESERIQQLLANYEASLSNKK 353

Query: 356 SEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 415
           S+FEAEL ++ KL  D+IE KRR WELR++DL  REE + E+EH+L++QSRA+VDKE  L
Sbjct: 354 SDFEAELEMRRKLVHDDIENKRRDWELREVDLHHREELISEKEHELDMQSRAVVDKESYL 413

Query: 416 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAK 475
            ER  LL EKEN L A +KE   K+SLLQKEKEE+N  K DLQKSL +L  +K+Q++ A+
Sbjct: 414 TERFSLLVEKENSLDAMKKEIQSKESLLQKEKEEINSSKLDLQKSLDALKNEKQQIHHAE 473

Query: 476 DKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKRE 535
           +K++AMKSE  EL VLE KLKEE++ +RAQK EL VE D+++  K KFE EW+ IDEKR+
Sbjct: 474 EKMKAMKSETDELFVLESKLKEEIETIRAQKQELEVEADEMKELKLKFEVEWQSIDEKRK 533

Query: 536 ELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEH 595
           EL+KEAE +  ER  + ++LKDER+SL+ E+DA+ D++ R+ +SL+R+REEF++KM HE 
Sbjct: 534 ELQKEAECINGEREALYRTLKDERNSLKLEKDAIWDEYTRNNESLSRDREEFLSKMEHER 593

Query: 596 SEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISS 655
           SE F+ IQ+ER+DF L  E+Q +DLE+ + KRREE+ES+  ERE+AFEEEK +E  +I S
Sbjct: 594 SELFSNIQKERSDFSLAFEVQTKDLEDRLAKRREEIESNLAERERAFEEEKRKELMRIDS 653

Query: 656 LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL 715
           L+E   +E EQV LE+ RLD ER EIN+DR++RDREWAELN+SIEEL  QRQKLE+QR+L
Sbjct: 654 LRETLARETEQVNLELNRLDTERREINLDREKRDREWAELNSSIEELKAQRQKLEKQREL 713

Query: 716 LHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHA 775
           + AD+E+I  + E LK+LED K+  D +A++++Q+S ++ S K++SA+R L QQ+     
Sbjct: 714 MRADKEDILVQIEHLKQLEDRKVVPDRLALTDIQQSDVQPS-KRVSARRFLKQQS----- 767

Query: 776 DLGSDQKFDVTNNGDRFNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGEN 828
             G D      NNG   NT   + +   SPP    FSW+KR A  + +    N
Sbjct: 768 --GIDSGCRSENNG---NTSPGKSSVIISPPVSTPFSWLKRCASSLLEQKASN 815

Source: Apium graveolens

Species: Apium graveolens

Genus: Apium

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1118
TAIR|locus:2169950	1042	LINC4 "LITTLE NUCLEI4" [Arabid	0.686	0.736	0.379	4.1e-120
TAIR|locus:2019529	1132	LINC1 "AT1G67230" [Arabidopsis	0.584	0.577	0.274	6.6e-69
TAIR|locus:2031875	1128	LINC2 "LITTLE NUCLEI2" [Arabid	0.644	0.638	0.263	4.5e-68
TAIR|locus:2012423	1085	LINC3 "LITTLE NUCLEI3" [Arabid	0.512	0.528	0.282	1.7e-56
GENEDB_PFALCIPARUM|PF11_0486	2055	PF11_0486 "MAEBL, putative" [P	0.312	0.169	0.277	3.3e-14
UNIPROTKB|Q8IHP3	2055	PF11_0486 "MAEBL, putative" [P	0.312	0.169	0.277	3.3e-14
ZFIN|ZDB-GENE-050208-317	1422	tnks1bp1 "tankyrase 1 binding	0.316	0.248	0.238	9.8e-17
TAIR|locus:504955294	1221	AT4G27595 "AT4G27595" [Arabido	0.355	0.325	0.252	3.5e-14
DICTYBASE|DDB_G0271058	1528	vilC "villin-like protein C" [	0.469	0.343	0.235	4.5e-14
DICTYBASE|DDB_G0272472	1508	DDB_G0272472 "putative actin b	0.498	0.369	0.233	4.6e-14

TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1182 (421.1 bits), Expect = 4.1e-120, P = 4.1e-120
 Identities = 301/793 (37%), Positives = 421/793 (53%)

Query:    84 SKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIR 143
             S Y    A A+  E   K D       I+   K    ++      K    S     H + 
Sbjct:   113 SAYVSALAEAKKREESLKKDVGIAKECISSLEKTLHEMRAECAETKVSAGSTMSEAH-VM 171

Query:   144 AESAETKVA-ADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANR----YHRSAERK 198
              E A  K+A A++K   A  +   A +    AE KL   ES + +  R    +    E K
Sbjct:   172 IEDALKKLADAEAKMRAAEALQAEANRYHRIAERKLKEVESREDDLTRRLASFKSECETK 231

Query:   199 LQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQTLLNER 258
               E+V     L+ R  S + +             SL+ R+  +    + L + +  L+  
Sbjct:   232 ENEMVIERQTLNERRKSLQQE----HERLLDAQVSLNQREDHIFARSQELAELEKGLDTA 287

Query:   259 EDHILSKLQELSRKEKELEASRANVEEKFKA-LNEEKSNLDLTL-----VSLLKREEAVI 312
             +     + +    K+  LE + A   ++ +       S L L L        L  + AV 
Sbjct:   288 KTTFEEERKAFEDKKSNLEIALALCAKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVS 347

Query:   313 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 372
             ERE+SL KKEQ+LLV++E +ASKES  IQ ++AN E  LR ++S+ EAEL  K K  E E
Sbjct:   348 ERESSLLKKEQELLVAEEKIASKESELIQNVLANQEVILRKRKSDVEAELECKSKSVEVE 407

Query:   373 IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 432
             IE KRRAWELR++D+ QRE+ + E+EHDLEVQSRAL +KEKD+ E+S  L+EKE  L+A 
Sbjct:   408 IESKRRAWELREVDIKQREDLVGEKEHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVAT 467

Query:   433 EKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLE 492
             E++ +            +  +                 V+ A  KLEA+KSE  ELS LE
Sbjct:   468 EEDINRKTTMLEDEKERLRKLDLELQQSLTSLEDKRKRVDSATQKLEALKSETSELSTLE 527

Query:   493 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXXXX 552
             +KLKEELD +RAQKLE++ E D+L++EKAKFEAEWE ID                     
Sbjct:   528 MKLKEELDDLRAQKLEMLAEADRLKVEKAKFEAEWEHIDVKREELRKEAEYITRQREAFS 587

Query:   553 XXXKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLG 612
                KDERD++++ERDA+R+QHK DV+SLNREREEFMNKMV EHSEW +KIQ+ERADFLLG
Sbjct:   588 MYLKDERDNIKEERDALRNQHKNDVESLNREREEFMNKMVEEHSEWLSKIQRERADFLLG 647

Query:   613 IEMQKRDLENCIXXXXXXXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLEIK 672
             IEMQKR+LE CI                          ++I S           V +E+K
Sbjct:   648 IEMQKRELEYCIENKREELENSSRDREKAFEQEKKLEEERIQSLKEMAEKELEHVQVELK 707

Query:   673 RLDLERMEINMDRQRRDREWAELNNSIEELMVXXXXXXXXXXXXHADREEIQAESERLKK 732
             RLD ER+EI +DR+RR+REWAEL +S+EEL V             A+R+EI+ E E LKK
Sbjct:   708 RLDAERLEIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKK 767

Query:   733 LEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQKFD-VTNNGDR 791
             LE+LK+A+D M++++MQ S LE S +K+SA   L Q+      +L        V+N+ D 
Sbjct:   768 LENLKVALDDMSMAKMQLSNLERSWEKVSA---LKQKVVSRDDELDLQNGVSTVSNSEDG 824

Query:   792 FNTPSVQKTASASPPSLARFSWIKRFADLVFKHSGENS--VENDEEKSPTSDHEDASLTI 849
             +N+ S+++    +P S   FSWIKR  +L+FK S E S  + + EE+      +   L +
Sbjct:   825 YNS-SMERQNGLTPSSATPFSWIKRCTNLIFKTSPEKSTLMHHYEEEGGVPSEK---LKL 880

Query:   850 NSRKRQPVRYSFG 862
              S +R+   Y+ G
Sbjct:   881 ESSRREEKAYTEG 893

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0006997 "nucleus organization" evidence=IMP

GO:0034399 "nuclear periphery" evidence=IDA

TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 6.6e-69, Sum P(2) = 6.6e-69
 Identities = 181/659 (27%), Positives = 314/659 (47%)

Query:    45 DKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDR 104
             D   L   I++LE E     +FE+QH MGLL++EKKE +S+YE ++ + E      K +R
Sbjct:    48 DPRILPEKISELEKE-----LFEYQHSMGLLLIEKKEWSSQYEALQQAFEEVNECLKQER 102

Query:   105 ASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMV 164
              +HL AIA+  KREE L+K LG+EK+C   LEKA+ E+RAE+AE K  ADSK  EA  +V
Sbjct:   103 NAHLIAIADVEKREEGLRKALGIEKQCALDLEKALKELRAENAEIKFTADSKLTEANALV 162

Query:   165 ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXX 224
              + ++K  E EAKL A ++  AE +R     ERK +EV ARE  L R   S+ A+     
Sbjct:   163 RSVEEKSLEVEAKLRAVDAKLAEVSRKSSDVERKAKEVEARESSLQRERFSYIAEREADE 222

Query:   225 XXXXXXXQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 284
                    + L + ++ LQ+  ER+  +Q ++ +RED      + + +K KELE ++  ++
Sbjct:   223 ATLSKQREDLREWERKLQEGEERVAKSQMIVKQREDRANESDKIIKQKGKELEEAQKKID 282

Query:   285 EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 344
                 A+ + + ++   +  L  RE+     + S++ K ++L   QE L ++E   +Q+++
Sbjct:   283 AANLAVKKLEDDVSSRIKDLALREQETDVLKKSIETKARELQALQEKLEAREKMAVQQLV 342

Query:   345 ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQ 404
               H++ L   Q EFE E+  K K  +D ++ K    E R+ +    EE + +RE  L+ +
Sbjct:   343 DEHQAKLDSTQREFELEMEQKRKSIDDSLKSKVAEVEKREAEWKHMEEKVAKREQALDRK 402

Query:   405 SRALVDKEKDLVERSHLLEEKENKLIAFEKEADXXXXXXXXXXXXVNIIXXXXXXXXXXX 464
                  +KE D   R   +  +E  L + EK  +            +  +           
Sbjct:   403 LEKHKEKENDFDLRLKGISGREKALKSEEKALETEKKKLLEDKEIILNLKALVEKVSGEN 462

Query:   465 XXXXXXVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 524
                   +N  KD+L   + E  E   L+ +LKE+++  R+Q+  L  E + L+ ++  FE
Sbjct:   463 QAQLSEINKEKDELRVTEEERSEYLRLQTELKEQIEKCRSQQELLQKEAEDLKAQRESFE 522

Query:   525 AEWEMIDXXXXXXXXXXXXXXXXXXXXXXXXKDERDSLRQERDAMRDQHKRDVDSLNRER 584
              EWE +D                          E + L++E+ A  +  +R++++L   +
Sbjct:   523 KEWEELDERKAKIGNELKNITDQKEKLERHIHLEEERLKKEKQAANENMERELETLEVAK 582

Query:   585 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIXXXXXXXXXXXXXXXXXXXX 644
               F   M +E S    K + ER+  L  IEM+KR LE+ +                    
Sbjct:   583 ASFAETMEYERSMLSKKAESERSQLLHDIEMRKRKLESDMQTILEEKERELQAKKKLFEE 642

Query:   645 XXXXXXQQISSXXXXXXXXXXQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 703
                     I+            +  E +R++ E++E++  +   + +  E+   +++L+
Sbjct:   643 EREKELSNINYLRDVARREMMDMQNERQRIEKEKLEVDSSKNHLEEQQTEIRKDVDDLV 701

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006997 "nucleus organization" evidence=IGI;IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0034399 "nuclear periphery" evidence=IDA

TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)]

 Score = 697 (250.4 bits), Expect = 4.5e-68, Sum P(3) = 4.5e-68
 Identities = 192/728 (26%), Positives = 338/728 (46%)

Query:    24 DESIWKRLKEAGL-DEVSIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKEL 82
             D   W+R +E GL +E S++++D+ AL+  I+ LE E Y      +QH+MGLL++E KEL
Sbjct:    59 DMGDWRRFREVGLLNEASMEKKDQEALLEKISTLEKELY-----GYQHNMGLLLMENKEL 113

Query:    83 ASKYEQI-KASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHE 141
              SK+EQ+ +A  EA E+L K +++SHL A+    +REE+L+K LG+EK+C+  LEKA+ E
Sbjct:   114 VSKHEQLNQAFQEAQEIL-KREQSSHLYALTTVEQREENLRKALGLEKQCVQELEKALRE 172

Query:   142 IRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQE 201
             I+ E+++ ++++++K  EA  +V +   + ++ E K+++AES  AEA R     + +L+E
Sbjct:   173 IQEENSKIRLSSEAKLVEANALVASVNGRSSDVENKIYSAESKLAEATRKSSELKLRLKE 232

Query:   202 VVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQTLLNEREDH 261
             V  RE  L +   SF  +            + L++ +K LQ + E + + +  LN+RE+ 
Sbjct:   233 VETRESVLQQERLSFTKERESYEGTFQKQREYLNEWEKKLQGKEESITEQKRNLNQREEK 292

Query:   262 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKK 321
             +    ++L  KEKELE     V+       E + ++   L  L  +E+     + +L  K
Sbjct:   293 VNEIEKKLKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKEAHTLQITLLAK 352

Query:   322 EQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWE 381
             E +L   +E L ++E  EIQK+I + +  L  K  EFE E     K  + E+++K    E
Sbjct:   353 ENELRAFEEKLIAREGTEIQKLIDDQKEVLGSKMLEFELECEEIRKSLDKELQRKIEELE 412

Query:   382 LRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADXXXX 441
              + +++   EE L +R   +  +   + +KE DL  +   ++E+E  + A EK       
Sbjct:   413 RQKVEIDHSEEKLEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQAEEKRLSLEKQ 472

Query:   442 XXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKSEAGELSVLEIKLKEELDV 501
                     +  +                 +      LE  K E  E   L+ +LK +++ 
Sbjct:   473 QLLSDKESLEDLQQEIEKIRAEMTKKEEMIEEECKSLEIKKEEREEYLRLQSELKSQIEK 532

Query:   502 VRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXXXXXXXXXKDERDS 561
              R  +  L  E + L+ EK +FE EWE++D                          E + 
Sbjct:   533 SRVHEEFLSKEVENLKQEKERFEKEWEILDEKQAVYNKERIRISEEKEKFERFQLLEGER 592

Query:   562 LRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLE 621
             L++E  A+R Q  +++D +  +RE F   M HE S    K++ E++  +  +EM +R+LE
Sbjct:   593 LKKEESALRVQIMQELDDIRLQRESFEANMEHERSALQEKVKLEQSKVIDDLEMMRRNLE 652

Query:   622 NCIXXXXXXXXXXXXXXXXXXXXXXXXXXQQISSXXXXXXXXXXQVTLEIKRLDLERMEI 681
               +                            I+           ++  +   L  E  EI
Sbjct:   653 IELQERKEQDEKDLLDRMAQFEDKRMAELSDINHQKQALNREMEEMMSKRSALQKESEEI 712

Query:   682 NMDRQRRDREWAELNNSIEELMVXXXXXXXXXXXXHADREEIQAESERLKKLEDLKIAVD 741
                + +   +  E++N I EL                +R    A  ++LK        V+
Sbjct:   713 AKHKDKLKEQQVEMHNDISELSTLSINLKKRREVFGRERSRFLAFVQKLKDCGSCGQLVN 772

Query:   742 YMAVSEMQ 749
                +S++Q
Sbjct:   773 DFVLSDLQ 780

GO:0005634 "nucleus" evidence=ISM

GO:0005654 "nucleoplasm" evidence=IDA

GO:0006997 "nucleus organization" evidence=IGI

GO:0006342 "chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0016572 "histone phosphorylation" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 1.7e-56, Sum P(2) = 1.7e-56
 Identities = 165/584 (28%), Positives = 285/584 (48%)

Query:     6 SGRLAITPSSRVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAALIAYIAKLETECYILK 64
             S  +   P  RVL   L ++  W++ KE GL DE S++R+D+ ALI  I KLE E     
Sbjct:    22 SDEIITPPPQRVL---LREDDDWQKFKEVGLLDEASLERKDRDALIEKILKLEKE----- 73

Query:    65 IFEHQHHMGLLILEKKELASKYEQIK-ASAEAAELLQKHDRASHLSAIAEARKREESLKK 123
             +F++QH+MGLL++EKK+  S   +++ A  EA E+L K ++ S+   + EA KREE+L+K
Sbjct:    74 LFDYQHNMGLLLIEKKQWTSTNNELQQAYDEAMEML-KREKTSNAITLNEADKREENLRK 132

Query:   124 TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAES 183
              L  EK+ +A LE  +   + E +  K  +++K  EA  +V   ++K  E + +   AE 
Sbjct:   133 ALIDEKQFVAELENDLKYWQREHSVVKSTSEAKLEEANALVIGMKEKALEVDRERAIAEE 192

Query:   184 LQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQ 243
               +  NR     ERKL+EV  RE    R   S   +            + L + +K L  
Sbjct:   193 KFSVMNRKSSELERKLKEVETREKVHQREHLSLVTEREAHEAVFYKQREDLQEWEKKLTL 252

Query:   244 EHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 303
             E +RL + +  +N RE+ ++   + + +KEK LE  +  +      L E++ ++ + L  
Sbjct:   253 EEDRLSEVKRSINHREERVMENERTIEKKEKILENLQQKISVAKSELTEKEESIKIKLND 312

Query:   304 LLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELA 363
             +  +E+     +A +  KE++L   +E L  +E  EI K++ + ++ L  ++ EFE EL 
Sbjct:   313 ISLKEKDFEAMKAKVDIKEKELHEFEENLIEREQMEIGKLLDDQKAVLDSRRREFEMELE 372

Query:   364 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLE 423
                +  ++E+E K+   E   +++  +EE L +RE  LE +   +  KEKDL  R   ++
Sbjct:   373 QMRRSLDEELEGKKAEIEQLQVEISHKEEKLAKREAALEKKEEGVKKKEKDLDARLKTVK 432

Query:   424 EKENKLIAFEKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKS 483
             EKE  L A EK+              +  +                 +    + L   K 
Sbjct:   433 EKEKALKAEEKKLHMENERLLEDKECLRKLKDEIEEIGTETTKQESRIREEHESLRITKE 492

Query:   484 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXX 543
             E  E   L+ +LK+++D V+ ++  L+ E ++L+ +K +FE EWE +D            
Sbjct:   493 ERVEFLRLQSELKQQIDKVKQEEELLLKEREELKQDKERFEKEWEALDKKRANITREQNE 552

Query:   544 XXXXXXXXXXXXKDERDSLRQERDAMRDQHKRDVDSLNREREEF 587
                           E+  L++E    RD  KR++D +  ++E F
Sbjct:   553 VAEENEKLRNLQISEKHRLKREEMTSRDNLKRELDGVKMQKESF 596

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0005654 "nucleoplasm" evidence=IDA

GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 235 (87.8 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
 Identities = 107/385 (27%), Positives = 184/385 (47%)

Query:    78 EKK---ELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 134
             EKK   EL  K E+ K + E  +  ++  +A  L   AE +K+ + LKK    EK+   +
Sbjct:  1384 EKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK-AEEKKKAEN 1442

Query:   135 LEKAVHEIRAES----AETKVAADS--KFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 188
             L+KA  + +A+     AE K  AD   K AE +   +  +KK   AE K  A E  +AE 
Sbjct:  1443 LKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK---AEEKKKADELKKAEE 1499

Query:   189 NRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQ--EHE 246
              +  ++ E K  E   + D+L +     KAD            +   ++KK+ Q+  E E
Sbjct:  1500 KK--KADELKKAEEKKKADELKKAEEKKKAD----ELKKAEELKKAEEKKKVEQKKREEE 1553

Query:   247 R---LLDAQTLLNEREDHILSKLQELSRKEKELEAS--RANVEEKFKALNEEKSNLDLTL 301
             R    L    +L + E   + ++ +L  +EK+++A   +   EEK KA   +K   +   
Sbjct:  1554 RRNMALRRAEILKQIEKKRIEEVMKLYEEEKKMKAEQLKKEEEEKIKAEQLKKEEEEKKK 1613

Query:   302 VSLLKREEAVIEREAS-LQKKEQKLLVSQETLASKESNEIQKI--IANHESALRVKQSEF 358
             V  LK++E   +++A  L+K+E++  +  E L  KE  E +K   +   E   + K  + 
Sbjct:  1614 VEQLKKKEEEEKKKAEQLKKEEEENKIKAEQLKKKEEEEKKKAEELKKEEEEEKKKAEQL 1673

Query:   359 EAELAIKYK---LAEDEIEKKRRAWELRDLDLGQR--EESLLEREHDLEVQSRALV--DK 411
             + E   K K   L + E E+K++A +L+  +   +   E L + E + + ++  L   ++
Sbjct:  1674 KKEEEEKKKVEQLKKKEEEEKKKAEQLKKEEEENKIKVEQLKKEEEEEKKKAEELKKEEE 1733

Query:   412 EKDLVERSHLLEEKENKLIAFEKEA 436
             EK  V++    EEK+ + I  EKEA
Sbjct:  1734 EKKKVQQLKKEEEKKAEEIRKEKEA 1758

GO:0016020 "membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0020007 "apical complex" evidence=TAS

UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 235 (87.8 bits), Expect = 3.3e-14, Sum P(3) = 3.3e-14
 Identities = 107/385 (27%), Positives = 184/385 (47%)

Query:    78 EKK---ELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 134
             EKK   EL  K E+ K + E  +  ++  +A  L   AE +K+ + LKK    EK+   +
Sbjct:  1384 EKKKADELKKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK-AEEKKKAEN 1442

Query:   135 LEKAVHEIRAES----AETKVAADS--KFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 188
             L+KA  + +A+     AE K  AD   K AE +   +  +KK   AE K  A E  +AE 
Sbjct:  1443 LKKAEEKKKADELKKKAEEKKKADELKKKAEEKKKADELKKK---AEEKKKADELKKAEE 1499

Query:   189 NRYHRSAERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQ--EHE 246
              +  ++ E K  E   + D+L +     KAD            +   ++KK+ Q+  E E
Sbjct:  1500 KK--KADELKKAEEKKKADELKKAEEKKKAD----ELKKAEELKKAEEKKKVEQKKREEE 1553

Query:   247 R---LLDAQTLLNEREDHILSKLQELSRKEKELEAS--RANVEEKFKALNEEKSNLDLTL 301
             R    L    +L + E   + ++ +L  +EK+++A   +   EEK KA   +K   +   
Sbjct:  1554 RRNMALRRAEILKQIEKKRIEEVMKLYEEEKKMKAEQLKKEEEEKIKAEQLKKEEEEKKK 1613

Query:   302 VSLLKREEAVIEREAS-LQKKEQKLLVSQETLASKESNEIQKI--IANHESALRVKQSEF 358
             V  LK++E   +++A  L+K+E++  +  E L  KE  E +K   +   E   + K  + 
Sbjct:  1614 VEQLKKKEEEEKKKAEQLKKEEEENKIKAEQLKKKEEEEKKKAEELKKEEEEEKKKAEQL 1673

Query:   359 EAELAIKYK---LAEDEIEKKRRAWELRDLDLGQR--EESLLEREHDLEVQSRALV--DK 411
             + E   K K   L + E E+K++A +L+  +   +   E L + E + + ++  L   ++
Sbjct:  1674 KKEEEEKKKVEQLKKKEEEEKKKAEQLKKEEEENKIKVEQLKKEEEEEKKKAEELKKEEE 1733

Query:   412 EKDLVERSHLLEEKENKLIAFEKEA 436
             EK  V++    EEK+ + I  EKEA
Sbjct:  1734 EKKKVQQLKKEEEKKAEEIRKEKEA 1758

GO:0008150 "biological_process" evidence=ND

GO:0020007 "apical complex" evidence=TAS

ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)]

 Score = 213 (80.0 bits), Expect = 9.8e-17, Sum P(3) = 9.8e-17
 Identities = 91/381 (23%), Positives = 165/381 (43%)

Query:    78 EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEK-ECIASLE 136
             EK++   + E+ +   E  E  +K         I E RK+EE LK+ +  E+ +    +E
Sbjct:   370 EKQKKDEQLEKERKQREEEE--EKKQEVERQRQIEETRKQEEELKRKMEEERRQAEKEIE 427

Query:   137 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA- 195
             +   E RA   + +   + +    +      Q+K      +    E L+ E     R   
Sbjct:   428 RQKEEERARMEKQQKERELEEKRRKIQEMERQRKEERQRQEREKEERLKKEREMEERKRI 487

Query:   196 --ERKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSDRKKILQQEHERLLDAQT 253
               ER  QE   R++    R+   K              Q   +R++  ++E ER+   + 
Sbjct:   488 EEERLRQEERLRQEREKERVKKEKEMEEERQRVQELERQKEEERRRKEEEEMERIRKEKE 547

Query:   254 LLNER----------EDHILSKLQELSR--KEKELEASRANVEEKFKALNEEKSNLDLTL 301
             +  ER          E+  L K QE+ R  KEKE+E  R  ++E  + + EE+   +  +
Sbjct:   548 IEEERRRIQELERQMEEERLRKEQEMERIRKEKEMEEERRRIQELERQMEEERLRKEQEM 607

Query:   302 VSLLKREEAVIER----EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSE 357
               + K +E   ER    E   QK+E +L   +E    K+  E+++     +   R K+ E
Sbjct:   608 ERIRKEKEMEEERRRIQELERQKEEDRLRKEREIARLKKEKEMEEERRRIQELERQKEEE 667

Query:   358 -FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 416
                 E  I+    E EIE+KR+   +++L+  Q+EE  L +E ++E + R   + E++ +
Sbjct:   668 RLRKEQEIERIKKEKEIEEKRQ--RIQELER-QKEEERLRKEREME-RIRKEKEIEEERL 723

Query:   417 ERSHLLEEKENKLIAFEKEAD 437
                 L  +KE + +  E+E +
Sbjct:   724 RIQELERQKEEERLRKEQEME 744

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:504955294 AT4G27595 "AT4G27595" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
 Identities = 112/443 (25%), Positives = 207/443 (46%)

Query:    24 DESIWKRLKEAGLD--EVSIKRRD-KAALIAYIAKLETECYI----LKIFE---HQHHMG 73
             +E I K ++   LD  EVS++ ++ K  L+   A+LE  C +    LK+ E   ++ H  
Sbjct:   458 EEKIKKAMESLTLDLQEVSVEAKEAKEKLLTCQAELEL-CGVQIESLKLAEKDTNEKHGK 516

Query:    74 LLILEKKELASKYEQIKASAEAAE------LLQKHDRASHLSAIAEARKREESLKKTLGV 127
             +L    ++  ++ + +K+S E  E        +   R  HL      +K E+       V
Sbjct:   517 ML----EDARNEIDGLKSSLENTENEFFNSKTEWEQRELHLMLCV--KKLEDG---NFSV 567

Query:   128 EKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAE----AEA-KLHAAE 182
             ++E ++ ++  +H    E+   K   D+K    R  +E   K   E    A+A  +   E
Sbjct:   568 QEE-LSKVKNLLHLKEVEACAAK-EEDAKMQTNRKELEEEIKDLQEIVEVAKADSMKLKE 625

Query:   183 SL-QAEANRYHRSAE-RKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXXQSLSD-RKK 239
             SL + E    + +AE RKL+E+     D   +++  K              Q   + R K
Sbjct:   626 SLVEKEDELKNTAAENRKLREMEVSSIDKIDQLSKVKESLVDKETKLQNIIQEAEELRVK 685

Query:   240 ILQ--QEHERLLDAQTLLNEREDHILSKLQELSR-KEKELEASRANVEEKFKALNEEKSN 296
              +   ++ E L  A+  L E+E  +LS +QE    + +EL A    +EE   A+NE   +
Sbjct:   686 EIDYLKKIEELSAAKESLVEKETKLLSTVQEAEELRRREL-ACLKKIEE-LSAVNERLVD 743

Query:   297 LDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQS 356
              +  L S ++  E + EREA   K+ ++L +S E L  KE+ ++Q ++  +E  LR K+S
Sbjct:   744 KETKLQSSIQEVEVLKEREAENIKQIEELSLSNERLVEKEA-KLQTVVQENEE-LREKES 801

Query:   357 EFEAELAIKYKLAE--DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKD 414
              ++ ++    K+ E   + E K ++    + +L +RE + L++  +L      L+DKE +
Sbjct:   802 AYQKKIEELSKVDEIFADREAKLQSSTQENEELREREVAYLKKIEELAKLQENLLDKENE 861

Query:   415 LVERSHLLEEKENKLIAFEKEAD 437
             L +    +E+ + K    EK+ +
Sbjct:   862 LHDMVLEIEDLKAKDSLAEKKIE 884

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)]

 Score = 223 (83.6 bits), Expect = 4.5e-14, P = 4.5e-14
 Identities = 132/561 (23%), Positives = 233/561 (41%)

Query:    78 EKKELASKYEQI-KASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLE 136
             E++E   K E+  K   E  E L+  D+A+ +++         S+  +       I+   
Sbjct:    61 EREERRKKREEDEKILKEEMEKLES-DKANRITSPKTPTSGSSSIALSPSTSSYSISENS 119

Query:   137 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAE 196
                      SA+  ++A  +  + R  +E   KK    + K+      + E  R  +  E
Sbjct:   120 GGDSSTSLLSAQA-ISAKEEREKRRKELEEEAKKLELEQQKIREEREKRKEERRLQQEEE 178

Query:   197 -RKLQEVVAREDDLSRRIASFKADCXXXXXXXXXXX--QSLSDRKKILQQEHERLLDAQT 253
              RKLQ+++ ++D  S +I   K +              + L+D+K   ++E + L D   
Sbjct:   179 QRKLQDLLDKKD--SEKIEKLKQEENEKLEKEEKERIEKELTDKK---EKEEKELADK-- 231

Query:   254 LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 313
             L  ER++  L+   E  +KEKE E   A+  EK +   E+K   +  L   L++E    E
Sbjct:   232 LEKERQEKELADKLEKEKKEKE-EKELADKLEKERLDKEKKDKEEKELADKLEKESQEKE 290

Query:   314 REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKY------K 367
                 L+K+++     ++    KE  E Q+     + A   K+ E E ELA K       K
Sbjct:   291 LAEKLEKEKELADKLEKEQKEKEEKERQEKELADKLAKEQKEKE-EKELADKLEKERQEK 349

Query:   368 LAEDEIEKKRRAWELRD-LDLGQREESLLEREHDLEVQSRALVDK-EKDLVERSHLLEEK 425
                D++EK+++  EL D L+  ++E+  LE+  + E Q + L DK  K+  E+    E++
Sbjct:   350 ELADKLEKEKQEKELADKLEKEKQEKESLEKL-EKEKQEKELADKLAKEQKEKEEKEEKE 408

Query:   426 EN-KLIAFEKEA-DXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKLEAMKS 483
             E  K    EKE  D              +                      K+KLE   +
Sbjct:   409 EKEKQEKEEKERKDKELAAAAAAAETEKLEKERLEKEKKELEEKELAEKLEKEKLEKELT 468

Query:   484 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA-KFEAEWEMIDXXXXXXXXXXX 542
             +  E    E +L ++L+  +  K EL  + +K Q EK  K   E E+ D           
Sbjct:   469 DKLEKEKKEKELADKLEKEKQDK-ELADKLEKEQKEKEEKQRKEKELADKLEKEKQDKEL 527

Query:   543 XXXXXXXXXXXXXKDER--DSLRQERD--AMRDQHKRDVDSLNREREEFMNKMVHEHSEW 598
                          K++   D L +E+    + D+  ++ +  +++ +EF  K+  E  E 
Sbjct:   528 ADKLAKEKEEKERKEKELADKLEKEKKDKELADKVTKEKEEKDKKEKEFKLKLEKEQKEK 587

Query:   599 FTKIQQERADFLLGIEMQKRD 619
               K++QER +F    E ++RD
Sbjct:   588 ELKLKQER-EFA---EKEERD 604

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

DICTYBASE|DDB_G0272472 DDB_G0272472 "putative actin binding protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 238 (88.8 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
 Identities = 140/599 (23%), Positives = 247/599 (41%)

Query:    37 DEVSIKRR-DKAALIAYIAKLETECYIL---KIFEHQHHMGLLILEKKELASKYEQIKAS 92
             +E+ +K   DK   I    KLE E  ++   K    +  +   IL KK+LA K E+ +  
Sbjct:   566 EEIKVKEELDKKKKIEQEKKLEQEKKLIEEKKRIAEEKRISDEILAKKQLAEKLEKERIE 625

Query:    93 AEAAEL-LQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS-LEKAVHEIRAESA-ET 149
              E  +L L K      L A+ + ++  E LK+   +EKE     + + +   R E   + 
Sbjct:   626 KELEDLRLAKELEEKRLLALRQEKELAEKLKRER-LEKEAEDKRIAQEIERKRLEKEKQD 684

Query:   150 KVAADSKFAEARCMVENAQKKFAEAEAKLHAAESL-----QAEANRYHRS-AERKLQEVV 203
             ++    K  + R   E  +K+ A+   K      +     Q E  +  +  AE+K +E +
Sbjct:   685 QLEKQRKLEQQRLQKEKDEKELADRLEKERIENEIKEKQKQLEKIKLEKELAEKKEKERL 744

Query:   204 AREDDLSRRIAS-FKADCXXXXXXXXXXXQSLSDRK--KILQQEHERL----LDAQTLLN 256
              +E D  +RIA   + +            + L   +  K    E +R+    L+ Q L  
Sbjct:   745 QKEAD-EKRIADQLEFERLLKLKQEKELAEKLEKERLEKEAAAEEKRIAAEKLEKQRLEK 803

Query:   257 EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREE--AVIER 314
             E E+  +++  E  R EKE E  R   + + K L +E     +    L +++E  A +E+
Sbjct:   804 EAEEKRIAQDLERKRLEKEAEEKRIAQDLERKRLEKEAEEKRIAAEKLKQQQELAAKLEK 863

Query:   315 EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFE--AELAIKYKLAEDE 372
             E   ++ E+K +  ++ +A +     +K IA      R+++ E +  A   ++ K  E E
Sbjct:   864 ERLEKEAEEKRIAQEKRIAEENRIAQEKKIAEELEKKRLQKEEQDRLAAAELERKRLEKE 923

Query:   373 IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 432
              E+KR A EL    L ++E + ++R  D E  + A ++KE+       L +E E K IA 
Sbjct:   924 AEEKRIAQELEKKRL-EKEAAEVKRIAD-EAAAAAKLEKER-------LEKEAEEKRIAD 974

Query:   433 EKEADXXXXXXXXXXXXVNIIXXXXXXXXXXXXXXXXXVNCAKDKL---EAMKSEAGELS 489
             E  A                                      K+K    EA    A  L 
Sbjct:   975 EAAAAAKLEKERLEKEAA-AAEEKRIADEAAAEAKLEKERLEKEKRIADEAAAEAAAALL 1033

Query:   490 VLEI-KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDXXXXXXXXXXXXXXXXX 548
               +I K KEE D +  +  EL  + DK + E+ + E + +  +                 
Sbjct:  1034 QQKIEKEKEERDRIAKENKELKEKEDKERKEQRQRERQEKEQERARALKEKIEKEKERLN 1093

Query:   549 XXXXXXXKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNK-MVHEHSEWFTKIQQER 606
                    K+ER+  ++ER   +++ + +   L +EREE   +  + + +E   K +QER
Sbjct:  1094 QQKLDQEKEEREREQRERKEQQEREENE-KQLEKEREEKERREKLKQRNEQLEKERQER 1151

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FLH0	NMCP_ARATH	No assigned EC number	0.5104	0.8425	0.9040	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00010658001 SubName- Full=Chromosome chr7 scaffold_275, whole genome shotgun sequence; (1056 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1118
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-12
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	2e-11
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-11
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	6e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-11
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-10
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	3e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-09
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-09
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	4e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-08
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	4e-07
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	4e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	2e-06
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-06
pfam12128	1198	pfam12128, DUF3584, Protein of unknown function (D	3e-06
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	4e-06
TIGR03319	514	TIGR03319, RNase_Y, ribonuclease Y	1e-05
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	2e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-05
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	6e-05
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	6e-05
PRK05771	646	PRK05771, PRK05771, V-type ATP synthase subunit I;	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	1e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
COG4717	984	COG4717, COG4717, Uncharacterized conserved protei	6e-04
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	6e-04
TIGR00618	1042	TIGR00618, sbcc, exonuclease SbcC	8e-04
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	8e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	9e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001
pfam01496	707	pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni	0.002
COG1269	660	COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.004
pfam05622	713	pfam05622, HOOK, HOOK protein	0.004
TIGR02680	1353	TIGR02680, TIGR02680, TIGR02680 family protein	0.004

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.7 bits (171), Expect = 7e-12
 Identities = 125/657 (19%), Positives = 283/657 (43%), Gaps = 38/657 (5%)

Query: 77  LEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLE 136
           LE KE   + E   +         +++       + E +++ E+LK+ L   +  +  LE
Sbjct: 291 LELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELE 350

Query: 137 KAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAE 196
           + + E+     E +    +   E   + E  +++ AE EA+L    +   E  R   S E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410

Query: 197 RKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 256
            +L+ +  R +DL   +   +A+ EE + E+    + L + ++ L++  +RL + +  L 
Sbjct: 411 ERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELA 470

Query: 257 EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 316
           E ++ +    +ELS  E  L+          +A       +   L +L      V    A
Sbjct: 471 ELQEELQRLEKELSSLEARLDR--------LEAEQRASQGVRAVLEALESGLPGVYGPVA 522

Query: 317 SLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKK 376
            L K ++K   + E         +  ++ N E A +  +   E +      L  D I+  
Sbjct: 523 ELIKVKEKYETALEAALGNRLQAV--VVENEEVAKKAIEFLKENKAGRATFLPLDRIKPL 580

Query: 377 RRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 436
           R                L++ +   E   R ++           L+ +   +     ++ 
Sbjct: 581 RSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVL--------GDTLVVDDLEQARRLARKL 632

Query: 437 DLKKSLLQKEKEEVNI--IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 494
            +K  ++  + + V      +   ++  S   +K+++   +++L  ++++  +L      
Sbjct: 633 RIKYRIVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKS 692

Query: 495 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 554
           LK EL  +     EL  + ++L+ +  + + E   ++E+ E+L+   E +  E     + 
Sbjct: 693 LKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL----EE 748

Query: 555 LKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIE 614
           L++E + L++  + + ++ +   ++L + +EE       E  E   +  QE    L  +E
Sbjct: 749 LEEELEELQERLEELEEELESLEEALAKLKEEI------EELEEKRQALQEE---LEELE 799

Query: 615 MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRL 674
            +  + E  ++    ELES  + RE+  +E +  E +      E+ E++L+++  E++ L
Sbjct: 800 EELEEAERRLDALERELESLEQRRERLEQEIEELEEE-----IEELEEKLDELEEELEEL 854

Query: 675 DLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 731
           + E  E+  + +  + E  EL + ++EL  ++++LEE+ + L ++  E++ E E+L+
Sbjct: 855 EKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLR 911

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 68.6 bits (167), Expect = 2e-11
 Identities = 154/682 (22%), Positives = 297/682 (43%), Gaps = 42/682 (6%)

Query: 29   KRLKEAGLDEVSIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQ 88
            K+ +EA  D    K+ ++      I K E E  +      Q  +      K +   K E+
Sbjct: 1230 KKAEEAKKDAEEAKKAEEERNNEEIRKFE-EARMAHFARRQAAIKAEEARKADELKKAEE 1288

Query: 89   IKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRA-ESA 147
             K + EA +  +K           EA+K +E+ KK    +K+  A+ +KA    +A E+A
Sbjct: 1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348

Query: 148  ETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 207
            + +  A +  AEA      A +K  E   K   A   +AE  +    A++K +E   + D
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408

Query: 208  DLSRRIASFK-ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 266
            +L +  A+ K AD  +K+ E  ++      + +  ++  E    A+     ++     K 
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE---EAKKAEEAKKK 1465

Query: 267  QELSRKEKELEA---SRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQ 323
             E ++K  E +         +E  K   E K   D    +   +++A   ++A   KK  
Sbjct: 1466 AEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525

Query: 324  KLLVSQETLASKESNEIQKIIANHE--SALRVKQSEFEAELAIKYKLAEDEIEKKRRAWE 381
            +   ++E   + E+ + ++     E   A  +K++E + +     K  ED+    R+A E
Sbjct: 1526 EAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE 1585

Query: 382  LRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK----LIAFEKEAD 437
             +  +  + EE +   E + ++++      E+  ++   L + +E K     +  ++  +
Sbjct: 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645

Query: 438  LKKSLLQKEKEEVNIIKSDLQKSLSSLDEKK-----KQVNCAKDKLEAMKSEAGEL-SVL 491
             KK+   K+ EE N IK+  +   +  D+KK     K     K   EA+K EA E     
Sbjct: 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAE 1705

Query: 492  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 551
            E+K KE  +  +A++L+   E +K++ E+AK EAE +   +K EE +K+ E    E+  +
Sbjct: 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED--KKKAEEAKKDEE----EKKKI 1759

Query: 552  SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 611
            +   K+E     + R       + ++D  + +R   ++K + +  + F  I +   +  L
Sbjct: 1760 AHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNL 1819

Query: 612  GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR-------------EFQQISSLKE 658
             I   K ++E+   K   + ++   E   AFE+ K               +F +   LKE
Sbjct: 1820 VINDSK-EMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKE 1878

Query: 659  KAEKELEQVTLEIKRLDLERME 680
              E+E+E+   EI+++D + +E
Sbjct: 1879 DDEEEIEE-ADEIEKIDKDDIE 1899

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 67.9 bits (166), Expect = 2e-11
 Identities = 108/541 (19%), Positives = 216/541 (39%), Gaps = 55/541 (10%)

Query: 197 RKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 256
           ++ +  +   +     +     D  E   E ++E + L + ++  +QE E L      L 
Sbjct: 181 KEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQE--EQEEEELEQEIEALE 238

Query: 257 EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV--IER 314
           ER   +  + + L   +  L    +   E  K   EE   L+  L  L ++ E +  +ER
Sbjct: 239 ERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELER 298

Query: 315 EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIE 374
           E    ++E + L +      +   +++ +    E                K +  E E+E
Sbjct: 299 EIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEE------------KLEKLESELE 346

Query: 375 KKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 434
           +           L +R + L ER  +LE +    +++ K L E    L+E+  +L A  +
Sbjct: 347 ELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALE 406

Query: 435 EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 494
           E   +   L+KE EE+     +L++ +  L+E+  Q+   +  +  +     +  V   +
Sbjct: 407 EIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQE 466

Query: 495 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 554
           L EE +    +  EL +E  + +L + K EAE   + E+ EEL KE              
Sbjct: 467 LPEEHEKELLELYELELEELEEELSREKEEAE---LREEIEELEKELRE----------- 512

Query: 555 LKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIE 614
           L++E   L +  +A++++ +  ++ L    EE                  E     L ++
Sbjct: 513 LEEELIELLELEEALKEELEEKLEKLENLLEEL-----------------EELKEKLQLQ 555

Query: 615 MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRL 674
             K +L    ++ +E  E     R     +E++ E ++     +K  KELE+   +++ L
Sbjct: 556 QLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615

Query: 675 DLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLE 734
                   +          EL  + EEL  + +KL  Q +L    +  ++   E++++LE
Sbjct: 616 --------LQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELE 667

Query: 735 D 735
            
Sbjct: 668 A 668

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 67.0 bits (164), Expect = 5e-11
 Identities = 120/684 (17%), Positives = 257/684 (37%), Gaps = 68/684 (9%)

Query: 81  ELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE---ESLKKTLGVEKECIASLEK 137
           EL ++   ++ S    E   +          AE  K     E L++ +  E++    L +
Sbjct: 298 ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE 357

Query: 138 AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 197
              E++ E  + +   +    E     +  +    + E        L+ E +R     +R
Sbjct: 358 EYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQR 417

Query: 198 KLQEVVAREDDLSR---RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTL 254
             +E+      ++    +I   + + E+K  EI ++   L      L +  + L D +  
Sbjct: 418 LSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEE 477

Query: 255 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD--LTLVSLLKR--EEA 310
            +  E  +    +EL+  E +  AS   V          K+++      V+ L    E  
Sbjct: 478 YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERY 537

Query: 311 VIEREASLQKKEQKLLVSQETLASKESNEIQK---------IIANHESALRVKQSEFEAE 361
               E +   +   ++V  + +A KE+ E+ K         +  N     R   S    +
Sbjct: 538 ATAIEVAAGNRLNNVVVEDDAVA-KEAIELLKRRKAGRATFLPLNKMRDERRDLSILSED 596

Query: 362 LAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 418
             I + +   E + K      +   D  + +     +E    L  + R +V  E +L E+
Sbjct: 597 GVIGFAVDLVEFDPKYEPAFKYVFGDTLVVED----IEAARRLMGKYR-MVTLEGELFEK 651

Query: 419 SHLL---EEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAK 475
           S  +          I F +    +   L++  E +    S LQ  L  +   + +++   
Sbjct: 652 SGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRI---ENRLDELS 708

Query: 476 DKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKRE 535
            +L     + GE+     +L++E + ++ +  EL  +   L+ E    ++E + ++ + E
Sbjct: 709 QELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIE 768

Query: 536 ELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEH 595
           EL ++                       +  +A+ D   R   S   E +  ++K+  E 
Sbjct: 769 ELEEDLH---------------------KLEEALNDLEARLSHSRIPEIQAELSKLEEEV 807

Query: 596 SEWFTKIQQERADF--LLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI 653
           S    ++++       L   +         ++++R +L+   +  EK  E    +     
Sbjct: 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK----- 862

Query: 654 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQR 713
              KE+ E+ELE++   ++ L+    ++  +R   + +  EL   IEEL  Q +K  ++ 
Sbjct: 863 ---KEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919

Query: 714 QLLHADREEIQAESERLKKLEDLK 737
             L   + +++A  E L ++ED K
Sbjct: 920 SEL---KAKLEALEEELSEIEDPK 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 67.1 bits (163), Expect = 6e-11
 Identities = 132/686 (19%), Positives = 277/686 (40%), Gaps = 27/686 (3%)

Query: 104  RASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCM 163
            + +      EARK EE+ KK     K       KA    +AE  E + A D+K  E    
Sbjct: 1104 KKTETGKAEEARKAEEAKKKAEDARK--AEEARKAEDARKAE--EARKAEDAKRVEIARK 1159

Query: 164  VENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 223
             E+A+K    AE    A ++ +AEA R  ++ E +  E + + +D  +  A+ KA+ E K
Sbjct: 1160 AEDARK----AEEARKAEDAKKAEAAR--KAEEVRKAEELRKAEDARKAEAARKAEEERK 1213

Query: 224  EREIIR-ERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 282
              E  + E    ++  K  ++  +   +A+    ER +  + K +E          +   
Sbjct: 1214 AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273

Query: 283  VEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQK 342
             EE  KA   +K+          K EE   ++    +KK ++   + E     E  + + 
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKAEE--KKKADEAKKKAEEAKKADEAKKKAEEAKKKA 1331

Query: 343  IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 402
              A  ++    K +E     A       +  E+K  A E +  +  ++ ++  ++  + +
Sbjct: 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391

Query: 403  VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS 462
                A    E+D  +   L +    K    +K  + KK   +K+K +    K++  K   
Sbjct: 1392 KADEAKKKAEEDKKKADELKKAAAAK----KKADEAKKKAEEKKKADEAKKKAEEAKKAD 1447

Query: 463  SL----DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 518
                  +E KK     K   EA K++  +    E K  +E      +  +   E  K   
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507

Query: 519  EKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVD 578
             K K +   +  + K+ +  K+AE             K + D L++  +  + + K+  +
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567

Query: 579  SLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRER 638
               +  E+    M    +E   K ++ R + ++ +  +++ ++   E+ ++  E+  +  
Sbjct: 1568 EAKKAEED--KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMK--AEEAKKAEEAKIKAE 1623

Query: 639  EKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 698
            E    EE+ ++ +Q+   + + +K+ E++    +   ++  E     +   ++  E   +
Sbjct: 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683

Query: 699  IEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIA--VDYMAVSEMQRSRLEHS 756
             E+     + L+++ +      E  + E+E  KK E+LK A   + +   E ++   E  
Sbjct: 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743

Query: 757  QKKISAKRHLNQQTSLAHADLGSDQK 782
            +K   AK+   ++  +AH     ++K
Sbjct: 1744 KKAEEAKKDEEEKKKIAHLKKEEEKK 1769

Length = 2084

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 66.3 bits (162), Expect = 7e-11
 Identities = 71/340 (20%), Positives = 142/340 (41%), Gaps = 10/340 (2%)

Query: 416 VERSHLLEEKENKLIAFEKEADLKKSLLQKEK--EEVNIIKSDLQKSLSSLDEKKKQVNC 473
            ER  L+EE        E++ + ++ L + E+  E +  +  +L+K L  L+ + ++   
Sbjct: 155 EERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER 214

Query: 474 AKDKLEAMKSEAGELSVLEIK-LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 532
            ++    ++     L + ++K L++EL+ +  +   L  E ++LQ E  + E E E +  
Sbjct: 215 YQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKS 274

Query: 533 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 592
           + EELR+E E +  E       LK+E + L  E   +R++ +      N   E       
Sbjct: 275 ELEELREELEELQEE----LLELKEEIEELEGEISLLRERLEE---LENELEELEERLEE 327

Query: 593 HEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 652
            +      K + E  + LL    Q        ++  EE  S+  E  +   E    E  +
Sbjct: 328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387

Query: 653 ISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 712
           + +   +   ELE++  EI+ L+     ++   +    E  EL   +EEL  + ++L E+
Sbjct: 388 LEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEE 447

Query: 713 RQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSR 752
            + L    EE++   + L++              E+    
Sbjct: 448 LEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLE 487

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 66.2 bits (162), Expect = 8e-11
 Identities = 78/391 (19%), Positives = 166/391 (42%), Gaps = 47/391 (12%)

Query: 193  RSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 252
            RS   +LQ +  R + L R      +  + + R I      LS       ++   +    
Sbjct: 670  RSEPAELQRLRERLEGLKRE----LSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI 725

Query: 253  TLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVI 312
              L + E+ +  +L+EL      LE    NV+ + K L      L+  L  L        
Sbjct: 726  EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL-------- 777

Query: 313  EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 372
              E +L   E +L  S+      E +++++ ++  E+ LR  + +       K +  E E
Sbjct: 778  --EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EYLEKE 834

Query: 373  IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 432
            I++ +     + +DL ++ +S+ +   +L  +   L ++ ++L      LE +   L   
Sbjct: 835  IQELQE----QRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890

Query: 433  EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 492
              E + +   L+++ EE+             +++K+K+++  K KLEA++ E  E+   +
Sbjct: 891  RDELEAQLRELERKIEELEA----------QIEKKRKRLSELKAKLEALEEELSEIEDPK 940

Query: 493  IKLKEE------LDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV 546
             + +E       L+ V+A+   +  E   L+        E+E + ++ +EL+++  +   
Sbjct: 941  GEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK--- 997

Query: 547  ERVVVSKSLKDERDSLRQERDAMRDQHKRDV 577
                    L++ER ++  ER    ++ KR+V
Sbjct: 998  --------LEEERKAI-LERIEEYEKKKREV 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.9 bits (161), Expect = 1e-10
 Identities = 80/364 (21%), Positives = 164/364 (45%), Gaps = 19/364 (5%)

Query: 375  KKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 434
            + +R+   +  +L + EE L E E  LE     L   + +L     LLEE   +L   E+
Sbjct: 657  RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 435  EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 494
            + +  K  L   +EE+  ++S L++    L+E ++++   +++LE ++ E   L     K
Sbjct: 717  QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776

Query: 495  LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 554
            LKEE++ +  ++  L  E ++L+ E  + E   + ++ + E L +  ER+  E     + 
Sbjct: 777  LKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE----IEE 832

Query: 555  LKDERDSLRQERDAMRDQHKRDVDSLNREREEF--MNKMVHEHSEWFTKIQQERADFLLG 612
            L++E + L ++ D + ++ +     L   +EE   +     E  +   ++++E+ +    
Sbjct: 833  LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEE 892

Query: 613  IEMQKRDLENC---IEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTL 669
            +   + +L      IEK RE LE    + E+   E    E +     ++  E ELE+   
Sbjct: 893  LRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIE 952

Query: 670  EIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESER 729
             ++        +N+         A      EE+  + ++L+ QR+ L   +E++    E 
Sbjct: 953  RLEEEIEALGPVNLR--------AI--EEYEEVEERYEELKSQREDLEEAKEKLLEVIEE 1002

Query: 730  LKKL 733
            L K 
Sbjct: 1003 LDKE 1006

Length = 1163

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 64.8 bits (158), Expect = 2e-10
 Identities = 124/620 (20%), Positives = 253/620 (40%), Gaps = 38/620 (6%)

Query: 163 MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ-EVVAREDDLSRRIASFKADCE 221
           + E  ++   EA+AK+   E   +E           L+ E+   +     +    + + E
Sbjct: 172 LSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELE 231

Query: 222 EKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE----REDHILSKLQELSRKEKELE 277
           ++   +      L + K+ L++   RLL+ ++L  E    RE+ +    + L   E+++E
Sbjct: 232 QEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIE 291

Query: 278 ASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL--LVSQETLASK 335
                  E  +   E +    L L  L +  E +   E  L+K E+KL  L S+    ++
Sbjct: 292 RLEELEREIEELEEELEGLRAL-LEELEELLEKLKSLEERLEKLEEKLEKLESELEELAE 350

Query: 336 ESNEIQKIIANHESALRVKQSEFEA------ELAIKYKLAEDEIEKKRRAWELRDLDLGQ 389
           E NE+ K++      L  +  E E       E   + + A  E++++         ++ +
Sbjct: 351 EKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQE 410

Query: 390 REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK-EKE 448
             E L +   +LE +   L ++ K L E+ + LE KE  +       +      Q+  +E
Sbjct: 411 ELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEE 470

Query: 449 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKE--ELDVVRAQK 506
               +    +  L  L+E+  +     +  E ++    EL  LE +L E  EL+    ++
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530

Query: 507 LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQER 566
           LE  +E  +  LE+ +   E   + + +EELR+  +R+        + LK+  + LR  R
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRL--------QELKELLEELRLLR 582

Query: 567 DAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEK 626
               +  +       RER + + K + E  E  +++++      L +   + +LE   E+
Sbjct: 583 TRKEELEE------LRERLKELKKKLKELEERLSQLEELLQS--LELSEAENELEEAEEE 634

Query: 627 RREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL---EQVTLEIKRLDLERMEINM 683
              ELE      +   EE      +++    E+ E E+    Q     ++L+ +  E+  
Sbjct: 635 LESELEK--LNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQ 692

Query: 684 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYM 743
             +  ++   EL   +++L    Q +EE         E  +   +  K LE L+   + +
Sbjct: 693 LEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKL 752

Query: 744 AVSEMQRSRLEHSQKKISAK 763
             + ++   L +   +I A+
Sbjct: 753 GKAGLRADILRNLLAQIEAE 772

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.4 bits (157), Expect = 3e-10
 Identities = 78/330 (23%), Positives = 157/330 (47%), Gaps = 8/330 (2%)

Query: 411 KEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE----EVNIIKSDLQKSLSSLDE 466
            E++L     LLEE E +L   E++A+  +   + + E    E+ ++ + L++    L+E
Sbjct: 184 TEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEE 243

Query: 467 KKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 526
            +++++  +++LE ++ E  E      +LK EL+ +R +  EL  E  +L+ E  + E E
Sbjct: 244 LEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGE 303

Query: 527 WEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREE 586
             ++ E+ EEL  E E +  ER+   K   +      +ER+ + ++ ++ +  L   +EE
Sbjct: 304 ISLLRERLEELENELEELE-ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362

Query: 587 FMNKMVHEHSEWFTKIQQERADF--LLGIEMQKRDLENCIEKRREELESSFREREKAFEE 644
              K+     E     +  R +   L     + R+    +++  E LE    ER     E
Sbjct: 363 LEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER-LERLSERLE 421

Query: 645 EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMV 704
           +   E +++ +  E+ + ELE++  E++ L+ +  E+    +  +RE AEL   ++ L  
Sbjct: 422 DLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481

Query: 705 QRQKLEEQRQLLHADREEIQAESERLKKLE 734
           +   LE +   L A++   Q     L+ LE
Sbjct: 482 ELSSLEARLDRLEAEQRASQGVRAVLEALE 511

Length = 1163

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 64.3 bits (157), Expect = 3e-10
 Identities = 119/541 (21%), Positives = 231/541 (42%), Gaps = 32/541 (5%)

Query: 219 DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA 278
           D E   + +    + +  R + L++  +R  + + L+ E+E  +   L+E++    EL  
Sbjct: 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP- 217

Query: 279 SRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 338
               + E+ + L +E   L+     + + E+ +   E S +K E+K+   +E +   +  
Sbjct: 218 ---ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKK- 273

Query: 339 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE 398
              +I    E    +K+ + +AE  IK     +E   + R  E R   L +    + ER 
Sbjct: 274 ---EIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330

Query: 399 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ 458
            +LE +   L + +K L E    LEE E +   +E+    K+ L + +K    +    L+
Sbjct: 331 KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLE 390

Query: 459 KSLSSLDEKKKQVNCAKDKLEA----MKSEAGELSVLEIKLKEELDVVRAQKLELMVETD 514
           K L  L++ K+++     K+ A    +K E  EL     +LK+          EL  E  
Sbjct: 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR 450

Query: 515 KLQLEK-----AKFEAEWEMIDEKREELRKEAERVAVERVVVSK--SLKDERDSLRQERD 567
           K  LE+      + E E + I+EK  +LRKE   +       S+   LK+  + L++  +
Sbjct: 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEE 510

Query: 568 AMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCI--- 624
            ++  +  +++    E E+   K++    E   K  ++  + L  ++ +  +LE  +   
Sbjct: 511 KLKKYNLEELEKKAEEYEKLKEKLIKLKGE--IKSLKKELEKLEELKKKLAELEKKLDEL 568

Query: 625 EKRREELESSFREREKAFEEEKMREFQQISSLKEK------AEKELEQVTLEIKRLDLER 678
           E+   EL     E      EE     +++     +      AEKELE+   E+K+L+ E 
Sbjct: 569 EEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEL 628

Query: 679 MEINMDRQRRDREWAELNNSIEELMVQ--RQKLEEQRQLLHADREEIQAESERLKKLEDL 736
            +   +    ++   EL   +EEL  +   ++ EE R+       E+      L++LE  
Sbjct: 629 DKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKR 688

Query: 737 K 737
           +
Sbjct: 689 R 689

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.7 bits (150), Expect = 2e-09
 Identities = 81/382 (21%), Positives = 167/382 (43%), Gaps = 22/382 (5%)

Query: 229  RERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFK 288
            R ++S   +K+ L++  E L + +  L + E+ + S   EL   E  LE  R  +EE  +
Sbjct: 657  RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716

Query: 289  ALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 348
             L E K  L     + L+ E   ++      ++E + L  +     +   E+++ + + E
Sbjct: 717  QLEELKREL-----AALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 349  SALRVKQSEFEAELAIKYKLAE--DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSR 406
             AL   + E E     +  L E  +E+E++    E R   L +  ESL +R   LE +  
Sbjct: 772  EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 407  ALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDE 466
             L ++ ++L E+   L+E E +L   EKE +  K  L++ + E   ++ +L++     +E
Sbjct: 832  ELEEEIEELEEK---LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE 888

Query: 467  KKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 526
             ++++   + +L  +K    E+  L  +L+E    +   ++EL    ++L+      E  
Sbjct: 889  LEEELRELESELAELKE---EIEKLRERLEELEAKLERLEVELPELEEELE------EEY 939

Query: 527  WEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH---KRDVDSLNRE 583
             + ++ + E   +  E        V+    +E + + +  + ++ Q    +   + L   
Sbjct: 940  EDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Query: 584  REEFMNKMVHEHSEWFTKIQQE 605
             EE   +      E F KI + 
Sbjct: 1000 IEELDKEKRERFKETFDKINEN 1021

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 61.3 bits (148), Expect = 3e-09
 Identities = 151/712 (21%), Positives = 289/712 (40%), Gaps = 54/712 (7%)

Query: 79   KKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKA 138
            K E A K E+ K  AE A   ++  +A       EARK E++ +  +  + E     E  
Sbjct: 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE-- 1167

Query: 139  VHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERK 198
                     E + A D+K AEA    E  +K    AE    A ++ +AEA R     ERK
Sbjct: 1168 ---------EARKAEDAKKAEAARKAEEVRK----AEELRKAEDARKAEAARKAEE-ERK 1213

Query: 199  LQEVVARED----DLSRRIASFKADCEEKER-EIIRERQSLSDRKKILQQEHERLLDAQT 253
             +E    ED    +  ++    K D EE ++ E  R  + +   ++       R   A  
Sbjct: 1214 AEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273

Query: 254  LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 313
                R+   L K +E  + ++  +A      ++ K   EE    D       K+ E   +
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD----EAKKKAEEAKK 1329

Query: 314  REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 373
            +  + +KK ++   + E   ++      +  A  E A   ++ + EA+   K   A+ + 
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK--KADAAKKKA 1387

Query: 374  EKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFE 433
            E+K++A E +       E+     E      ++   D+ K   E     +E + K    +
Sbjct: 1388 EEKKKADEAKK---KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444

Query: 434  KEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD---EKKKQVNCAKDKLEAMKSEAGELSV 490
            K  + KK   + +K E    K++  K         E+ K+ + AK K E  K +A E   
Sbjct: 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKK 1504

Query: 491  LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAE-RVAVERV 549
                 K+  +  +A++ +   E  K +  K   EA+     +K +EL+K  E + A E+ 
Sbjct: 1505 AAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564

Query: 550  VVSKSLKDERD---SLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQER 606
               ++ K E D   +LR+  +A + +  R  + +    EE   K          KI+ E 
Sbjct: 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEE 1624

Query: 607  ADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE-------- 658
                L    +++     ++K+  E +    E +KA EE K++  ++    +E        
Sbjct: 1625 ----LKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680

Query: 659  -KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLH 717
             KAE++ ++    +K+   E  +    +++   E  +     +     + K EE ++   
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK--- 1737

Query: 718  ADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQ 769
             + EE + ++E  KK E+ K  + ++   E +++     +K+   +  L+++
Sbjct: 1738 -EAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788

Length = 2084

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 60.9 bits (148), Expect = 4e-09
 Identities = 99/547 (18%), Positives = 215/547 (39%), Gaps = 16/547 (2%)

Query: 42  KRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQK 101
                 AL   + +L+    I +  E +     +   ++ LA   E+ +   E    L +
Sbjct: 201 IEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLE 260

Query: 102 --HDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAE 159
                   L    E  +  E L + L  + E +  LE+ + E+  E    +   +    E
Sbjct: 261 IESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEEL-EE 319

Query: 160 ARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKAD 219
               +++ +++  + E KL   ES   E         + L+E +   ++    +      
Sbjct: 320 LLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEK 379

Query: 220 CEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEAS 279
             E+ +++    Q L +    L    E + +    L +  + +  +L+EL  + K+LE  
Sbjct: 380 ALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQ 439

Query: 280 RANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLL---VSQETLASKE 336
              +E K   + E     +   V   +  E   +    L + E + L   +S+E   ++ 
Sbjct: 440 INQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAEL 499

Query: 337 SNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLE 396
             EI+++               E E A+K +L E   + +    EL +L    + + L E
Sbjct: 500 REEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKE 559

Query: 397 REHDLEVQSRALVDKEKDLVERSHLLE------EKENKLIAFEKEADLKKSLLQKEKEEV 450
               LE + + L +  ++L       E      E+  +L    KE + + S L++  + +
Sbjct: 560 ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619

Query: 451 NII--KSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLE 508
            +   +++L+++   L+ + +++N   +  E +++   EL     +L+ E+     +   
Sbjct: 620 ELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIEN 679

Query: 509 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA 568
                +KL+ E  + E E E + E+ EEL K+      + +   +S K E + L++E + 
Sbjct: 680 EEQLEEKLE-ELEQLEEELEQLREELEELLKKLGE-IEQLIEELESRKAELEELKKELEK 737

Query: 569 MRDQHKR 575
           +    + 
Sbjct: 738 LEKALEL 744

Length = 908

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.5 bits (147), Expect = 5e-09
 Identities = 76/358 (21%), Positives = 150/358 (41%), Gaps = 28/358 (7%)

Query: 195 AERKLQEVVAREDDLSRRIASFKADCE--EKEREIIRERQSLSDRKKILQQE--HERLLD 250
           AERKL+      + L   +   +   E  E++ E     Q L    + L+      +L +
Sbjct: 177 AERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKE 236

Query: 251 AQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE--EKSNLDLTLVSLLKRE 308
            +  L E E+ +    +EL   ++ELE +   +EE    L E  E+       +  LK E
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE 296

Query: 309 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFE--AELAIKY 366
              +E E SL ++  + L ++     +   E+++ I   +  L  +++  E   +L  + 
Sbjct: 297 IEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAEL 356

Query: 367 KLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKE 426
           + A++E+E+K  A       L +  E L E                ++L E    L E  
Sbjct: 357 EEAKEELEEKLSA-------LLEELEELFEA-------------LREELAELEAELAEIR 396

Query: 427 NKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAG 486
           N+L   ++E +  +  L++  E +  +K +L++  + L+E + ++    ++LE ++ +  
Sbjct: 397 NELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLE 456

Query: 487 ELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 544
           EL     +L+ EL  ++ +   L  E   L+    + EAE       R  L      +
Sbjct: 457 ELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.5 bits (147), Expect = 5e-09
 Identities = 70/374 (18%), Positives = 164/374 (43%), Gaps = 24/374 (6%)

Query: 328  SQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDL 387
                   +E  E+++ +A  E+ L   + E +  L  + +  ED +E+ RR  E  +  L
Sbjct: 660  RSSLAQKRELKELEEELAELEAQLEKLEEELK-SLKNELRSLEDLLEELRRQLEELERQL 718

Query: 388  GQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEK 447
             + +        +L      L   +  L E    LEE E +L   ++  +  +  L+  +
Sbjct: 719  EELKR-------ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE 771

Query: 448  EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 507
            E +  +K ++++        ++++   +++LE  +     L      L++  + +  +  
Sbjct: 772  EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 508  ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD 567
            EL  E ++L+ +  + E E E ++++ EEL++E E +  E+  +   LK+  +   +  +
Sbjct: 832  ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 568  AMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKR 627
             +R + + ++  L  E E+   ++         + + ER      +E++  +LE  +E+ 
Sbjct: 892  ELR-ELESELAELKEEIEKLRERLEE------LEAKLER------LEVELPELEEELEEE 938

Query: 628  REELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQR 687
             E+   +  ERE    EE++     ++    +A +E E+V    + L  +R ++   +++
Sbjct: 939  YEDTLETELEREIERLEEEIEALGPVN---LRAIEEYEEVEERYEELKSQREDLEEAKEK 995

Query: 688  RDREWAELNNSIEE 701
                  EL+    E
Sbjct: 996  LLEVIEELDKEKRE 1009

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 60.1 bits (146), Expect = 7e-09
 Identities = 75/318 (23%), Positives = 150/318 (47%), Gaps = 14/318 (4%)

Query: 273 EKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKK----EQKLLVS 328
           E++LE +  N+E     L E +  L+      L+R+    ER   L+ +    E  LL++
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEK-----LERQAEKAERYQELKAELRELELALLLA 232

Query: 329 QETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLG 388
           +     KE  E+++ ++  E  L   Q E E E   + +  + E+E+ R   E    +L 
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELE-EAEKEIEELKSELEELREELEELQEELL 291

Query: 389 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE---ADLKKSLLQK 445
           + +E + E E ++ +    L + E +L E    LEE + K+ A ++E    +     L++
Sbjct: 292 ELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQ 351

Query: 446 EKEEVNIIKSDLQKSLSSLDEKKKQVNCA-KDKLEAMKSEAGELSVLEIKLKEELDVVRA 504
              E+   K +L++ LS+L E+ +++  A +++L  +++E  E+     +LK E++ +  
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411

Query: 505 QKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 564
           +   L    + L+ E  + EAE E +  + EEL +E E +  +   +   LK+    L +
Sbjct: 412 RLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAE 471

Query: 565 ERDAMRDQHKRDVDSLNR 582
            ++ ++   K       R
Sbjct: 472 LQEELQRLEKELSSLEAR 489

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 59.3 bits (144), Expect = 1e-08
 Identities = 74/323 (22%), Positives = 137/323 (42%), Gaps = 21/323 (6%)

Query: 169 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREII 228
           +++ E +A+L   E     A        ++L+E+      L   +   + + EE E+EI 
Sbjct: 213 ERYQELKAELRELELALLLAKLKE--LRKELEELEEELSRLEEELEELQEELEEAEKEIE 270

Query: 229 RERQSLSDRKKILQQEHERLLDAQTLLNERE---DHILSKLQELSRKEKELEASRANVEE 285
             +  L + ++ L++  E LL+ +  + E E     +  +L+EL  + +ELE     ++E
Sbjct: 271 ELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKE 330

Query: 286 KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIA 345
           K +AL EE    +  L  L +    + E +  L++K   LL   E L      E+ ++ A
Sbjct: 331 KIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEA 390

Query: 346 NHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQS 405
                    +              + EIE      E     L   +E L E E +LE   
Sbjct: 391 ELAEIRNELEE------------LKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438

Query: 406 RALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLD 465
             L +  ++L E    LEE  ++L   E+E    +  LQ+ ++E+    S L+  L  L+
Sbjct: 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKEL----SSLEARLDRLE 494

Query: 466 EKKKQVNCAKDKLEAMKSEAGEL 488
            +++     +  LEA++S    +
Sbjct: 495 AEQRASQGVRAVLEALESGLPGV 517

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 58.5 bits (142), Expect = 2e-08
 Identities = 87/378 (23%), Positives = 140/378 (37%), Gaps = 88/378 (23%)

Query: 359 EAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 418
           +AE A +YK    E++ + R  EL  L    R E L E   +L+ + +   ++ ++L   
Sbjct: 208 QAEKAERYK----ELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAE 261

Query: 419 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 478
              LEEK  +L     E + +   LQKE   +    S L++    L E+   +    ++L
Sbjct: 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321

Query: 479 EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR 538
           EA   E         +L EEL  +  +  EL  E + L+ E  + EAE E ++ + EEL 
Sbjct: 322 EAQLEELESKL---DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378

Query: 539 KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEW 598
           ++ E            L+ +   L  +  ++ ++ +R    L R                
Sbjct: 379 EQLET-----------LRSKVAQLELQIASLNNEIERLEARLER---------------- 411

Query: 599 FTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE 658
                                    +E RRE L+    E  K  EE +++E Q      E
Sbjct: 412 -------------------------LEDRRERLQQEIEELLKKLEEAELKELQAELEELE 446

Query: 659 KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHA 718
           +  +EL+                            EL    E L   R++LEE  Q L A
Sbjct: 447 EELEELQ---------------------------EELERLEEALEELREELEEAEQALDA 479

Query: 719 DREEIQAESERLKKLEDL 736
              E+     RL  LE L
Sbjct: 480 AERELAQLQARLDSLERL 497

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.4 bits (139), Expect = 4e-08
 Identities = 124/674 (18%), Positives = 258/674 (38%), Gaps = 71/674 (10%)

Query: 78  EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 137
           +K+ L  +   ++   E  E           S + E  +    L++ L   KE + SLE 
Sbjct: 303 QKQILRERLANLERQLEELEA----QLEELESKLDELAEELAELEEKLEELKEELESLEA 358

Query: 138 AVHEIRAESAETKVAAD----------SKFAEARCMVENAQKKFAEAEAKLHAAESLQAE 187
            + E+ AE  E +   +          SK A+    + +   +    EA+L   E  +  
Sbjct: 359 ELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER 418

Query: 188 ANRYHRSAERKLQ-----EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQ 242
             +      +KL+     E+ A  ++L   +   + + E  E  +   R+ L + ++ L 
Sbjct: 419 LQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALD 478

Query: 243 QEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRA-------------NVEEKFKA 289
                L   Q  L+  E  +   L+  S   K L  +++             +V+E ++A
Sbjct: 479 AAERELAQLQARLDSLER-LQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEA 537

Query: 290 LNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL-------LVSQETLASKESNEIQK 342
             E      L  V +++   A  +  A L++ E           +    +   +   ++ 
Sbjct: 538 AIEAALGGRLQAV-VVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKN 596

Query: 343 IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDL- 401
           I      A  + + + +   A+ Y L    +        L      +    ++  + DL 
Sbjct: 597 IEGFLGVAKDLVKFDPKLRKALSYLLGGVLV-VDDLDNALELAKKLRPGYRIVTLDGDLV 655

Query: 402 ---EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ 458
               V +         ++ER   +EE E K+   E++    +  L + ++E+  ++ +L+
Sbjct: 656 RPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELE 715

Query: 459 KSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 518
           +    L+E  +Q++  +  L  +++E  +L     +L +EL  + A+  EL    ++ + 
Sbjct: 716 QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775

Query: 519 EKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVD 578
           E A+ EAE        EEL  + E++  E   + ++L + R  L    +   +       
Sbjct: 776 ELAEAEAE-------IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL------ 822

Query: 579 SLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRER 638
              RER E + + +         ++++  +    IE         +    EELE    E 
Sbjct: 823 ---RERLESLERRIAATERRLEDLEEQIEELSEDIES--------LAAEIEELEELIEEL 871

Query: 639 EKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 698
           E   E     E   +         ELE+++ E++ L+ +R E+  + +    + A+L   
Sbjct: 872 ESELEALL-NERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR 930

Query: 699 IEELMVQRQKLEEQ 712
           +E L V+   L+E+
Sbjct: 931 LEGLEVRIDNLQER 944

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 57.0 bits (138), Expect = 5e-08
 Identities = 73/348 (20%), Positives = 149/348 (42%), Gaps = 20/348 (5%)

Query: 74  LLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIA 133
           L  LE++    + +  K   E   L  +      L  + E R++ E L++ L   K  +A
Sbjct: 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDL--LEELRRQLEELERQLEELKRELA 726

Query: 134 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 193
           +LE+ + ++++   E     + +  E    +E  Q++  E E +L + E   A+      
Sbjct: 727 ALEEELEQLQSRLEEL----EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782

Query: 194 SAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 253
             E K Q +    ++L   +   +   +  ERE+    +SL  R++ L+QE E L     
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALEREL----ESLEQRRERLEQEIEEL----- 833

Query: 254 LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 313
              E  + +  KL EL  + +ELE     ++E+ + L  EK  L+  L  L + +E + E
Sbjct: 834 --EEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE 891

Query: 314 REASLQKKEQKL---LVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAE 370
               L+ +  +L   +        +   +++++           + E+E  L  + +   
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951

Query: 371 DEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 418
           + +E++  A    +L   +  E + ER  +L+ Q   L + ++ L+E 
Sbjct: 952 ERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEV 999

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 57.0 bits (138), Expect = 5e-08
 Identities = 106/657 (16%), Positives = 231/657 (35%), Gaps = 54/657 (8%)

Query: 150 KVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDL 209
                 +  E +  ++ A+++  E  A+L   E    E        E +++E+      L
Sbjct: 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYAL 293

Query: 210 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILS---KL 266
           +  I+  +   +     +    + L + +  L++   +L +    L E E+ +     +L
Sbjct: 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353

Query: 267 QELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLL 326
           + L  + +ELEA    +E + + L E+   L   +  L  +  ++      L+ + ++L 
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE 413

Query: 327 VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD 386
             +E L  +    ++K+       L+ +  E E EL    +  E   E      E  +  
Sbjct: 414 DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE- 472

Query: 387 LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKE 446
             Q  ++       L+ +  +L   +++L   S  ++              +   L+  +
Sbjct: 473 AEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD 532

Query: 447 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK-SEAGELSVLEIKLKEELDVVRAQ 505
           +     I++ L   L ++  +      AK  +  +K +E G ++ L       LD ++  
Sbjct: 533 EGYEAAIEAALGGRLQAVVVENLNA--AKKAIAFLKQNELGRVTFLP------LDSIKGT 584

Query: 506 KLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQE 565
           +++     D+  L+  +          K +   ++A    +  V+V   L +  +  ++ 
Sbjct: 585 EIQ---GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKL 641

Query: 566 RDAMR----DQHK-RDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDL 620
           R   R    D    R    +     +  + ++          ++E  +    IE  +  +
Sbjct: 642 RPGYRIVTLDGDLVRPGGVITGGSAKTNSSILER--------RREIEELEEKIEELEEKI 693

Query: 621 ENCIEKRREELESSFREREKAFE------EEKMREFQQISSLKEKAEKELEQVTLEIKRL 674
              +EK   EL     E E+  E      EE  R+   +     + E E+EQ+   I +L
Sbjct: 694 AE-LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752

Query: 675 DLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ------------------RQLL 716
             E  E+  + +  +    E    + E   + ++LE Q                  R  L
Sbjct: 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812

Query: 717 HADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLA 773
               EE     ERL+ LE    A +       ++        +  A      +  + 
Sbjct: 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIE 869

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 55.8 bits (135), Expect = 1e-07
 Identities = 116/533 (21%), Positives = 226/533 (42%), Gaps = 51/533 (9%)

Query: 78  EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 137
           E  EL  + E+ +   E A    + +    L    E R+  E+L+  +   +E IA  E+
Sbjct: 214 ELAELDEEIERYEEQREQARE-TRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272

Query: 138 AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 197
              E+  E  + +   +    E   ++  A    A+AEA                   E 
Sbjct: 273 EREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA------------------VEA 314

Query: 198 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 257
           + +E+  R+++L  R+   +   +    E    R+   D ++  ++  E   + ++ L E
Sbjct: 315 RREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE 374

Query: 258 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS 317
             + +  + +E+   E+E+E  R    +    L   +  L+       +  E   E EA+
Sbjct: 375 AREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434

Query: 318 LQKKEQKLLVSQETLASKESNEIQKII--ANHESAL---RVKQSEFEAELAIKYKLAEDE 372
           L+   +++  ++  L + +  E  + +  + H   +   R +  E EAEL    +   +E
Sbjct: 435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELE-DLEEEVEE 493

Query: 373 IEKK-RRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIA 431
           +E++  RA +L + +   R E L ER  DLE     + ++ + + E+    EE   +   
Sbjct: 494 VEERLERAEDLVEAE--DRIERLEERREDLE---ELIAERRETIEEKRERAEELRERAAE 548

Query: 432 FEKEADLKKSLLQK---EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 488
            E EA+ K+    +   E EE     ++L   L+ L E+ + +   +  L A+     E+
Sbjct: 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEI 608

Query: 489 SVLEIKL----------KEELDVVRAQKLELMVETD-----KLQLEKAKFEAEWEMIDEK 533
             L  K           +E L   R +K EL  E D     + + +K + E   E ++EK
Sbjct: 609 ERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEK 668

Query: 534 REELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREE 586
            +ELR+E + +  E   V   L+ E + LR+ R+A+ ++ +  +++L  E EE
Sbjct: 669 LDELREERDDLQAEIGAVENELE-ELEELRERREALENRVEA-LEALYDEAEE 719

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.1 bits (133), Expect = 2e-07
 Identities = 65/319 (20%), Positives = 133/319 (41%), Gaps = 12/319 (3%)

Query: 154 DSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRI 213
             +  E    +E  ++K AE E  L        E         ++L+E+  +   L + +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 214 ASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKE 273
           A  +A+ E+ E  I +  + L++ +  +++  ERL +A+  L E E  I    +EL  + 
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEI----EELEAQI 791

Query: 274 KELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 333
           ++L+     + E    L  E + L+    +L +R E+ +ER  +  ++  + L  Q    
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLES-LERRIAATERRLEDLEEQ---I 847

Query: 334 SKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREES 393
            + S +I+ + A  E  L     E E+EL          +E+          +L +    
Sbjct: 848 EELSEDIESLAAEIEE-LEELIEELESELEALLNE-RASLEEALALLRSELEELSEELRE 905

Query: 394 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNII 453
           L  +  +L  +   L +K   L  R   LE + + L   E+ ++     L++ +   N I
Sbjct: 906 LESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ--ERLSEEYSLTLEEAEALENKI 963

Query: 454 KSDLQKSLSSLDEKKKQVN 472
           + D +++   L   + ++ 
Sbjct: 964 EDDEEEARRRLKRLENKIK 982

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 54.3 bits (131), Expect = 3e-07
 Identities = 74/350 (21%), Positives = 155/350 (44%), Gaps = 27/350 (7%)

Query: 197 RKLQEVVAREDDLSRRIASFKADCEEKEREIIRER---QSLSDRKKILQQEHERLLDAQT 253
           RK+ + +A   +  R+      + EE E  I R          + + L++E E+    Q 
Sbjct: 156 RKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQA 215

Query: 254 LLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIE 313
           LL E+ ++   +  EL ++++ LE  +  +E +  +L EE   L   +  L KR E + +
Sbjct: 216 LLKEKREY---EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272

Query: 314 REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 373
               L KK + L   ++    ++  E++  IA+ E ++  K+ E E +   +    E EI
Sbjct: 273 LLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELE-DAEERLAKLEAEI 331

Query: 374 EK-----------------KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 416
           +K                 +R        +L +  E L     +++ +     D+ KD  
Sbjct: 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391

Query: 417 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 476
           E+   L+ + N+L   ++E D  +  LQ+  EE+  + + +    + ++E +++      
Sbjct: 392 EKLEKLKREINEL---KRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAL 448

Query: 477 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 526
           +++  + +  +L+    K ++EL  ++ +   +  E  KLQ E A+ EA+
Sbjct: 449 EIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ 498

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 54.7 bits (132), Expect = 3e-07
 Identities = 60/296 (20%), Positives = 117/296 (39%), Gaps = 9/296 (3%)

Query: 111 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENA 167
           I E  ++   L+K L   ++ +  LE+ + ++R E  E      A     A     VE  
Sbjct: 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745

Query: 168 QKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREI 227
           +++ A+   +L   E+   E       AE +L E  A  ++L  +I   K + +     +
Sbjct: 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL 805

Query: 228 IRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKF 287
              R  L+   +      ERL   +  +   E  +    +++    +++E+  A +EE  
Sbjct: 806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865

Query: 288 KALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLL-----VSQETLASKESNEIQK 342
           + + E +S L+  L      EEA+    + L++  ++L       S+     +E  E   
Sbjct: 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLA 925

Query: 343 IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLERE 398
            +      L V+    +  L+ +Y L  +E E      E  D +  +R    LE +
Sbjct: 926 QLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIED-DEEEARRRLKRLENK 980

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 53.6 bits (130), Expect = 4e-07
 Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 44/198 (22%)

Query: 167 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVV--AREDDLSRRIASFKADCEEKE 224
           A+ K  EAE +   A+ +  EA +    AE   +E +  A+E+    R         E E
Sbjct: 29  AEAKIKEAEEE---AKRILEEAKK---EAEAIKKEALLEAKEEIHKLR--------NEFE 74

Query: 225 REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 284
           +E+   R  L   +K L Q+ E L     LL +RE+ +  K +EL +K++ELE     +E
Sbjct: 75  KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELE 134

Query: 285 EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 344
           E  +   +E     L  +S L  EEA   +E  L+K E++                    
Sbjct: 135 ELIEEQLQE-----LERISGLTAEEA---KEILLEKVEEE-------------------- 166

Query: 345 ANHESALRVKQSEFEAEL 362
           A HE+A+ +K+ E EA+ 
Sbjct: 167 ARHEAAVLIKEIEEEAKE 184

Length = 520

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 53.9 bits (130), Expect = 4e-07
 Identities = 94/579 (16%), Positives = 213/579 (36%), Gaps = 59/579 (10%)

Query: 185 QAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE 244
           Q   NR  +       ++    D+L++ +++  A       E+    + L D+K   +  
Sbjct: 287 QEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSEL----ELLEDQKGAFEDA 342

Query: 245 HERLLDAQTLLN--EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV 302
                D + L    ++   I S+L+E+  +   L     +V+ K++ L ++        +
Sbjct: 343 -----DIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQLERDL 397

Query: 303 SLLKREEAVI---------EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESA-LR 352
                  A I           E  LQ  E +L    E    + + E  ++         R
Sbjct: 398 EKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQR 457

Query: 353 VKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKE 412
           +  +    E   + ++ ++ +EK +   E  + ++ Q +  L +     +    AL   E
Sbjct: 458 LDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLRKRRDEALEALQRAE 517

Query: 413 KDLVERSHLLEEKENKLIA--------FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSL 464
           + L++    L+E E +L             EA   +  + K      + ++DL   L   
Sbjct: 518 RRLLQLRQALDELELQLSPQAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEG 577

Query: 465 DEKKK--QVNCAKDKLEAMKSEAGE------LSVLEIKLKEELDVVRAQKLELM---VET 513
            +      V+    +L+     A E      L   E  L+  +   +  + +L+    E 
Sbjct: 578 SDSDTLYGVSLDLQRLDVPDYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAEL 637

Query: 514 DKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 573
           ++ +  +A+     +      + L+ E +     +  +  ++ + +     +   +  Q 
Sbjct: 638 EEQKRAEAEARTALKQARLDLQRLQNEQQS---LKDKLELAIAERKQQAETQLRQLDAQL 694

Query: 574 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELES 633
           K     L  +++ F+  +  +  E  T+   +       ++ Q   L   IE  R +   
Sbjct: 695 K----QLLEQQQAFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQA-- 748

Query: 634 SFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWA 693
             + R K  +++  RE   +  +     KEL++   E++   +ER+ +     R  R + 
Sbjct: 749 --KARLKELKKQYDRELASL-DVDPNTVKELKRQIEELETT-IERIAVRRPEVREYRAF- 803

Query: 694 ELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK 732
                ++E  + R  L E+R  L     E+++ +E L++
Sbjct: 804 -----MQETWLHRDSLREERPNLAIQLRELESSAEELQQ 837

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 7e-07
 Identities = 62/363 (17%), Positives = 147/363 (40%), Gaps = 23/363 (6%)

Query: 112  AEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKF 171
               R+R E LK+ L   +  +  +E  + E+             + ++A   +   +K+ 
Sbjct: 677  QRLRERLEGLKRELSSLQSELRRIENRLDELS-----------QELSDASRKIGEIEKEI 725

Query: 172  AEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRER 231
             + E +    +    E      S E++++ V +   +L  RI   + D  + E  +    
Sbjct: 726  EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLE 785

Query: 232  QSLSDRK-KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 290
              LS  +   +Q E  +L +  + +  R   I  KL  L+ +++ LE     ++E+   L
Sbjct: 786  ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845

Query: 291  NEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESA 350
             E+  +++  + +L  ++E + E    L+   + L             +++K     E+ 
Sbjct: 846  KEQIKSIEKEIENLNGKKEELEEELEELEAALRDL--------ESRLGDLKKERDELEAQ 897

Query: 351  LRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQS--RAL 408
            LR  + + E EL  + +     + + +   E  + +L + E+   E E   E +     +
Sbjct: 898  LRELERKIE-ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956

Query: 409  VDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKK 468
              + + + E    LE      I   +E   +   L++++ ++   +  + + +   ++KK
Sbjct: 957  QAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016

Query: 469  KQV 471
            ++V
Sbjct: 1017 REV 1019

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.8 bits (127), Expect = 1e-06
 Identities = 61/286 (21%), Positives = 120/286 (41%), Gaps = 8/286 (2%)

Query: 49  LIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHL 108
           L A + +LE    + K+ E +  +  L   ++EL+   E+++   E  E  +K +     
Sbjct: 218 LKAELRELELALLLAKLKELRKELEEL---EEELSRLEEELEELQEELEEAEK-EIEELK 273

Query: 109 SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQ 168
           S + E R+  E L++ L   KE I  LE  +  +R    E +   +         +E  +
Sbjct: 274 SELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER----LEELK 329

Query: 169 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREII 228
           +K    + +L   E+L  E  +     E   +E+  +   L   +        E+  E+ 
Sbjct: 330 EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE 389

Query: 229 RERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFK 288
            E   + +  + L++E E L +    L+ER + +  +L+EL  + +EL+     + E+ +
Sbjct: 390 AELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE 449

Query: 289 ALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 334
            L E+   L   L  L +    + E    L+K+   L    + L +
Sbjct: 450 ELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEA 495

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.8 bits (127), Expect = 1e-06
 Identities = 72/378 (19%), Positives = 151/378 (39%), Gaps = 46/378 (12%)

Query: 165  ENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKE 224
             + Q +    E +L       ++A+R     E++++++   E+ L  R+   + D    E
Sbjct: 691  SSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLE 750

Query: 225  REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHIL-SKLQELSRKEKELEASRANV 283
            +EI   +  L + +  +++  E L   +  LN+ E  +  S++ E              +
Sbjct: 751  QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPE--------------I 796

Query: 284  EEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKI 343
            + +   L EE S ++  L  + ++   +   +  L+K+ Q+L   +  L  +  +  ++I
Sbjct: 797  QAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856

Query: 344  IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEV 403
                   L  K+ E E EL  + + A  ++E +          LG  ++   E E  L  
Sbjct: 857  -----ENLNGKKEELEEELE-ELEAALRDLESR----------LGDLKKERDELEAQLRE 900

Query: 404  QSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSS 463
              R + + E  + ++   L E + KL A          L ++  E  +    D +     
Sbjct: 901  LERKIEELEAQIEKKRKRLSELKAKLEA----------LEEELSEIEDPKGEDEEIPEEE 950

Query: 464  LDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 523
            L  +  Q      ++E        +++L I   +E + V  +  EL  +  KL+ E+   
Sbjct: 951  LSLEDVQAEL--QRVEEEIRALEPVNMLAI---QEYEEVLKRLDELKEKRAKLEEERKAI 1005

Query: 524  EAEWEMIDEKREELRKEA 541
                E  ++K+ E+  EA
Sbjct: 1006 LERIEEYEKKKREVFMEA 1023

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.4 bits (126), Expect = 1e-06
 Identities = 64/315 (20%), Positives = 133/315 (42%), Gaps = 25/315 (7%)

Query: 257 EREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSL----LKREEAVI 312
           E  + +   + E  ++ + L   R    E+++AL +EK   +   +      L+R++  I
Sbjct: 184 ENIERLDLIIDEKRQQLERLRRER-EKAERYQALLKEKREYEGYELLKEKEALERQKEAI 242

Query: 313 EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 372
           ER+ +  ++E + L  + +   K   EI++++   E   ++K    E +L +K K+ E E
Sbjct: 243 ERQLASLEEELEKLTEEISELEKRLEEIEQLLE--ELNKKIKDLGEEEQLRVKEKIGELE 300

Query: 373 IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 432
            E            L +          D E +        K   E   LL E E      
Sbjct: 301 AEIAS---------LERSIAEKERELEDAEERLA------KLEAEIDKLLAEIEELEREI 345

Query: 433 EKEADLKKSL---LQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 489
           E+E   +  L     + KEE+  ++++L++      E + ++   ++KLE +K E  EL 
Sbjct: 346 EEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELK 405

Query: 490 VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 549
               +L+EEL  +  +  +L      ++ +  + E E E    + ++   + E++A +  
Sbjct: 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS 465

Query: 550 VVSKSLKDERDSLRQ 564
              + L D ++   +
Sbjct: 466 KYEQELYDLKEEYDR 480

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 52.7 bits (126), Expect = 1e-06
 Identities = 103/722 (14%), Positives = 247/722 (34%), Gaps = 27/722 (3%)

Query: 75  LILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIAS 134
           L +E++   S+ ++ K       + +  + A  +  + E + +E  LK+      E    
Sbjct: 157 LEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL 216

Query: 135 LEKA--------VHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 186
            EK           +    + E          + +  +E+++++  + E  L        
Sbjct: 217 KEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENK 276

Query: 187 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 246
           E  +  +  E +L+ +   E++L   +   +    + E ++    + L   +K L++E E
Sbjct: 277 EEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKE 336

Query: 247 RLLDAQTLLNE----REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV 302
            + + +  L E    RE     + Q    +EK  +     + +K        S   L   
Sbjct: 337 EIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEE 396

Query: 303 SLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAEL 362
            L  + E   E +  L+  EQ+  + +E    +     +   +      ++ + + E E 
Sbjct: 397 ELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEK 456

Query: 363 AIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLL 422
                L +    KK          +   E+  L        ++     K ++ +     L
Sbjct: 457 QALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLAL 516

Query: 423 EEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK 482
            +    L             +     +V I  + + +  +  DE  ++    +   E   
Sbjct: 517 IKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPL 576

Query: 483 SEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE---------WEMIDEK 533
                 + + +    +L +     LE+    +  QL KA  EA+           ++ + 
Sbjct: 577 PAR---TFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGILKDT 633

Query: 534 REELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH 593
                 E+ +     +    SL++      + + ++ +  K  +     + +       +
Sbjct: 634 ELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKN 693

Query: 594 EHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELE---SSFREREKAFEEEKMREF 650
           E      +I+++       ++  K + E  +  + +E +   +   +  +   +EK  E 
Sbjct: 694 EILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEE 753

Query: 651 QQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 710
           ++    KE+ E+E  +++L+ K L  E  +    +   ++E        E   ++ +  E
Sbjct: 754 EKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKE 813

Query: 711 EQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQT 770
           E   L        Q E  + ++LE+L + +      E          ++   K  L Q+ 
Sbjct: 814 EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQEL 873

Query: 771 SL 772
            L
Sbjct: 874 LL 875

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.0 bits (125), Expect = 2e-06
 Identities = 74/392 (18%), Positives = 163/392 (41%), Gaps = 31/392 (7%)

Query: 256  NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD--LTLVSLLKREEAVIE 313
             +    IL + +E+   E+++E     + E  KAL E +  L+     +  L++E   + 
Sbjct: 666  AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725

Query: 314  REASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 373
            R+ S  +K+   L ++     +   ++ K +   E A   +  E   E   +   AE EI
Sbjct: 726  RQISALRKDLARLEAEVEQLEERIAQLSKELTELE-AEIEELEERLEEAEEELAEAEAEI 784

Query: 374  EKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFE 433
            E+        +  + Q +E L      L+     L    ++       LE  E ++ A E
Sbjct: 785  EE-------LEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATE 837

Query: 434  KEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEI 493
            +  +  +  +++  E++  + +++++    ++E + ++    ++  +++     L     
Sbjct: 838  RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897

Query: 494  KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE----MIDEKREELRKEAERVAVERV 549
            +L EEL  + +++ EL  E ++L+ + A+ E   E     ID  +E L +E         
Sbjct: 898  ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL---- 953

Query: 550  VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF 609
                   +E ++L  + +   ++ +R +  L  + +E     V+  +    +  +ER DF
Sbjct: 954  -------EEAEALENKIEDDEEEARRRLKRLENKIKELGP--VNLAAIEEYEELKERYDF 1004

Query: 610  LLG----IEMQKRDLENCIEKRREELESSFRE 637
            L      +   K  LE  IE+   E    F++
Sbjct: 1005 LTAQKEDLTEAKETLEEAIEEIDREARERFKD 1036

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.6 bits (124), Expect = 2e-06
 Identities = 86/426 (20%), Positives = 166/426 (38%), Gaps = 64/426 (15%)

Query: 306  KREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIK 365
            K   +++ER   +++ E+K+   +E +A  E              LR +  E E EL   
Sbjct: 667  KTNSSILERRREIEELEEKIEELEEKIAELEKALA---------ELRKELEELEEELE-- 715

Query: 366  YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK 425
                  E+E+  R       DL + E  + + E  +   S+ L + E ++ E    LEE 
Sbjct: 716  --QLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773

Query: 426  ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA 485
            E +L   E E +  ++ +++ KEE+  ++  L +  + L    ++    +++LE+++   
Sbjct: 774  EEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833

Query: 486  GELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 545
                     L+E+++ +      L  E ++L+    + E+E E +  +R  L +      
Sbjct: 834  AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA--- 890

Query: 546  VERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQE 605
                     L+ E + L +E   +  +       L RE EE   K+              
Sbjct: 891  --------LLRSELEELSEELRELESK----RSELRRELEELREKLAQLELRL------- 931

Query: 606  RADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELE 665
                              +E R + L+    E      EE      +I   +E+A + L+
Sbjct: 932  ----------------EGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLK 975

Query: 666  QVTLEIKRL---DLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREE 722
            ++  +IK L   +L  +E          E+ EL    + L  Q++ L E ++ L    EE
Sbjct: 976  RLENKIKELGPVNLAAIE----------EYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025

Query: 723  IQAESE 728
            I  E+ 
Sbjct: 1026 IDREAR 1031

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 51.6 bits (124), Expect = 2e-06
 Identities = 111/536 (20%), Positives = 222/536 (41%), Gaps = 63/536 (11%)

Query: 152 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSR 211
             +S+ AE    +E  +++  +A      A+ +  E    H     +L+ + A  +DL  
Sbjct: 210 GLESELAELDEEIERYEEQREQARETRDEADEVLEE----HEERREELETLEAEIEDLRE 265

Query: 212 RIASFKADCEEKEREIIRER-QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 270
            IA       E+ERE + E  + L +R + L++E + LL    L +   + + ++ +EL 
Sbjct: 266 TIAE-----TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELE 320

Query: 271 RKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE 330
            +++EL           +A NEE  +L         RE+A    E + + +E        
Sbjct: 321 DRDEELRDRLEECRVAAQAHNEEAESL---------REDADDLEERAEELRE-------- 363

Query: 331 TLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQR 390
                E+ E++  +     A+  ++ E E          E+EIE+ R  +    +DLG  
Sbjct: 364 -----EAAELESELEEAREAVEDRREEIEE--------LEEEIEELRERFGDAPVDLGNA 410

Query: 391 EESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF---EKEADLKKSLLQKEK 447
           E+ L E   + +       + E  L      +EE E  L A    E    ++ S   +  
Sbjct: 411 EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETI 470

Query: 448 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL 507
           EE      +L+  L  L+E+ ++V    ++ E +      +  LE + ++  +++  ++ 
Sbjct: 471 EEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRE 530

Query: 508 ELMVETDK---LQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDS 561
            +  + ++   L+   A+ EAE E   E   E  +EAE    E   ++     LK+  +S
Sbjct: 531 TIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES 590

Query: 562 LR--QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRD 619
           L   +   A     + +++ L  +RE               ++  ER + L     +KR+
Sbjct: 591 LERIRTLLAAIADAEDEIERLREKREAL------------AELNDERRERLAEKRERKRE 638

Query: 620 LENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLD 675
           LE   ++ R E     +ER + + E+   +  ++   ++  + E+  V  E++ L+
Sbjct: 639 LEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELE 694

Length = 880

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 51.3 bits (123), Expect = 3e-06
 Identities = 119/601 (19%), Positives = 246/601 (40%), Gaps = 52/601 (8%)

Query: 224 EREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHIL------------------SK 265
           ERE  R R   +   +I++ + ER+ D +  +NE+ + +L                    
Sbjct: 88  EREFRRGRGQSTGSLQIIEVDGERIADGKKDVNEKIEELLGLDKDTFTRSVYLPQGEFDA 147

Query: 266 LQELSRKEKE-----------LEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIER 314
             +   KE++            E     ++E  K    +   L+  L  LL+  E ++E 
Sbjct: 148 FLKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEA 207

Query: 315 -EASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 373
            E  L++ ++   + +E    +   EI+ +          K+   E +  +    + +  
Sbjct: 208 LEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELE 267

Query: 374 EKKRRAWELRDLD-----LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 428
             K R  ELR+L+     L ++ E L E E ++E     L      L E   LLE+ ++ 
Sbjct: 268 ALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSL 327

Query: 429 LIAFEKEADLKKSL------LQKEKEEVNIIKSDLQKSLSS-LDEKKKQVNCAKDKLEAM 481
               EK  +  + L      L +EK E+  +  +  K L   L+E +K++  A ++L+ +
Sbjct: 328 EERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQL 387

Query: 482 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEA 541
           +    EL     +L   L+ ++ +  EL  E ++L+ E  + E E + ++E+  +L  + 
Sbjct: 388 EEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKE 447

Query: 542 ERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFM--NKMVHEHSEWF 599
             +A       K     ++   +    + + ++ +++ L  E        ++  E  E  
Sbjct: 448 LMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELE 507

Query: 600 TKIQ---QERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSL 656
            +++   +E  + L   E  K +LE  +EK    LE     +EK   ++   E +Q+   
Sbjct: 508 KELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDR 567

Query: 657 KEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLL 716
            ++ ++ LE++ L   R +        + + R +E  +    +EE + Q ++L +  +L 
Sbjct: 568 LQELKELLEELRLLRTRKEELE-----ELRERLKELKKKLKELEERLSQLEELLQSLELS 622

Query: 717 HADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHAD 776
            A+ E  +AE E   +LE L +  +   + +     LE   +++ A+     Q       
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQ 682

Query: 777 L 777
           L
Sbjct: 683 L 683

Length = 908

>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)

 Score = 51.2 bits (123), Expect = 3e-06
 Identities = 136/708 (19%), Positives = 264/708 (37%), Gaps = 80/708 (11%)

Query: 78  EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 137
           E ++L   +EQ+ +     + L     A     +AE ++  +  K  L   ++ + +LE 
Sbjct: 247 EIEKLQEDFEQLLSLELRLQHLHGELVA-DEERLAEEQEERQEAKNRL---RQQLRTLED 302

Query: 138 AVHEIRAESAETKVAADSKFAEARCMVENAQ--------KKFAEAEAKLHAAESLQAEAN 189
            + E R E  +   AA++K A  R  +E  +            + +A L    S+++E  
Sbjct: 303 QLKEARDELNQELSAANAKLAADRSELELLEDQKGAFEDADIEQLQADLDQLPSIRSELE 362

Query: 190 RYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLL 249
                 +    +    +    R     K   E    +      ++ + K   +   E  L
Sbjct: 363 EVEARLDALTGKHQDVQRKYERLKQKIKEQLERDLEKNNERLAAIREEKDRQKAAIEEDL 422

Query: 250 DAQTL-LNEREDHILSKLQELSRKEKELEASRANVEEK-FKALNEEKSNLDLTLVSLLKR 307
            A    L ++ +    +  E    E EL   R         A  EE   L++   +L K 
Sbjct: 423 QALESQLRQQLEAGKLEFNE-EEYELELRLGRLKQRLDSATATPEELEQLEINDEALEKA 481

Query: 308 EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALR-VKQSEFEAELAIKY 366
           +E     E +    EQ  L S+     K  +E  + +   E  L  ++Q+  E EL +  
Sbjct: 482 QEEQ---EQAEANVEQ--LQSELRQLRKRRDEALEALQRAERRLLQLRQALDELELQLSP 536

Query: 367 K-------------LAEDEIEKKRRAWELRDLDL------GQREESLLEREHDLE-VQSR 406
           +               E+ I K      L   DL      G   ++L     DL+ +   
Sbjct: 537 QAGSLLHFLRNEAPGWEESIGKVISPELLERTDLDPQLVEGSDSDTLYGVSLDLQRLDVP 596

Query: 407 ALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDE 466
                E +L ER    EE     +A +K+A+ +      E EE        +++ +    
Sbjct: 597 DYAANETELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEE-------QKRAEAEART 649

Query: 467 KKKQVNCAKDKLEAMKSEAGELSV-LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 525
             KQ   A+  L+ +++E   L   LE+ + E       Q  +L  +  +L  ++     
Sbjct: 650 ALKQ---ARLDLQRLQNEQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQ---- 702

Query: 526 EWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER- 584
               ++  +++ R+       +  VV   L ++   L    +A R Q K  +  L ++  
Sbjct: 703 --AFLEALKDDFRELRTERLAKWQVVEGELDNQLAQLSAAIEAARTQAKARLKELKKQYD 760

Query: 585 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRRE--ELESSFRER---E 639
            E  +  V        +++++  +        +  +E    +R E  E  +  +E     
Sbjct: 761 RELASLDVDP--NTVKELKRQIEEL-------ETTIERIAVRRPEVREYRAFMQETWLHR 811

Query: 640 KAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 699
            +  EE+     Q+  L+  AE+  +++T  IK   L R ++  +R+  +++  +L+  +
Sbjct: 812 DSLREERPNLAIQLRELESSAEELQQELTRLIKDTKLRRKKLEQERKALEKQLDQLDELL 871

Query: 700 EELMVQRQKLEEQRQLLHADREEIQAE---SERLKKLEDLKIAVDYMA 744
             L  + ++L E    L       QAE   SERL +LE+ K     ++
Sbjct: 872 RGLRDEMRQLAE----LKEPANANQAEGSISERLDQLEEFKRKRKRLS 915

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication. Length = 1198

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 50.7 bits (121), Expect = 4e-06
 Identities = 97/672 (14%), Positives = 217/672 (32%), Gaps = 21/672 (3%)

Query: 78  EKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEK 137
            ++E      + +   ++  L  +  +      + E+ K  + L+K L  EKE I  LEK
Sbjct: 284 LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEK 343

Query: 138 AVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAER 197
            + E+             K        E  +K   + E       + +   +    SA +
Sbjct: 344 ELKELEI-----------KREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAK 392

Query: 198 KLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE 257
             +E +  +++  +         E++E  +  E++      + L++  E      T   E
Sbjct: 393 LKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKE 452

Query: 258 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS 317
             +    KL +   + K+ E      +        E   L   L    ++E    E  A 
Sbjct: 453 ELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAV 512

Query: 318 LQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKR 377
           L    +  +  +   A+    ++   +AN++    V  S              DE +K  
Sbjct: 513 LLALIKDGVGLRIISAAGRGGDLGVAVANYK----VAISVAVIVEVSAVADEVDERQKLV 568

Query: 378 RAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 434
           RA     L           L      + V           L + +   +E + +    E 
Sbjct: 569 RALTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEG 628

Query: 435 EADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIK 494
                +     E  +          SL     +K ++  +  +L        EL      
Sbjct: 629 ILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAES 688

Query: 495 LKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKS 554
              + +++R Q+     E    +  K     + E++ +K +E + +            K 
Sbjct: 689 ELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKE 748

Query: 555 LKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIE 614
            ++E +  R +++   ++            EE       +  E   +  + + + L  +E
Sbjct: 749 KEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALE 808

Query: 615 MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEK---ELEQVTLEI 671
            + ++    +E+ +  +E   + +E+  EE  +   ++    K   E+     E++T E 
Sbjct: 809 EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 868

Query: 672 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 731
              +L   E  ++ Q+   E        +E   + ++  ++  LL     EI+       
Sbjct: 869 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEA 928

Query: 732 KLEDLKIAVDYM 743
            +     +    
Sbjct: 929 IILLKYESEPEE 940

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y

 Score = 48.8 bits (117), Expect = 1e-05
 Identities = 55/197 (27%), Positives = 86/197 (43%), Gaps = 44/197 (22%)

Query: 167 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVV--AREDDLSRRIASFKADCEEKE 224
           A+KK   AE     A+ +  EA    + AE   +E +  A+E+    R         E E
Sbjct: 23  AEKKLGSAEEL---AKRIIEEA---KKEAETLKKEALLEAKEEVHKLR--------AELE 68

Query: 225 REIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 284
           RE+   R  L   ++ L Q  E L      L+++E+++  K +ELS KEK L+     +E
Sbjct: 69  RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELE 128

Query: 285 EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 344
           E      EE     L  +S L +EEA   +E  L++ E++                    
Sbjct: 129 ELIAEQREE-----LERISGLTQEEA---KEILLEEVEEE-------------------- 160

Query: 345 ANHESALRVKQSEFEAE 361
           A HE+A  +K+ E EA+
Sbjct: 161 ARHEAAKLIKEIEEEAK 177

Members of this family are RNase Y, an endoribonuclease. The member from Bacillus subtilis, YmdA, has been shown to be involved in turnover of yitJ riboswitch [Transcription, Degradation of RNA]. Length = 514

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 48.2 bits (116), Expect = 2e-05
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 23/161 (14%)

Query: 345 ANHESALRVKQSEFEAELAIKYKL--AEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 402
           A  E+   +++++ EAE   K  L  A++EI K R  +E          + L ER ++L+
Sbjct: 36  AEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFE----------KELRERRNELQ 85

Query: 403 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS 462
              + L+ KE++L  +  LLE++E +L   EKE + K+  L+K++EE+  +  +  + L 
Sbjct: 86  KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145

Query: 463 SL-----DEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEE 498
            +     +E K+ +      LE ++ EA   + + IK  EE
Sbjct: 146 RISGLTAEEAKEIL------LEKVEEEARHEAAVLIKEIEE 180

Length = 520

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 3e-05
 Identities = 64/323 (19%), Positives = 131/323 (40%), Gaps = 41/323 (12%)

Query: 266 LQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKL 325
           L EL R+ K LE  +A   E++K L  E   L+L L  +L+ EE   E E   ++ ++  
Sbjct: 195 LNELERQLKSLER-QAEKAERYKELKAELRELELAL-LVLRLEELREELEELQEELKE-- 250

Query: 326 LVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDL 385
              +    + E  E+++ +      +   + E E      Y LA  EI +          
Sbjct: 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN-EISRL--------- 300

Query: 386 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 445
                       E   ++    L + E+ L E    LEE E+KL   E   +L +  L++
Sbjct: 301 ------------EQQKQILRERLANLERQLEELEAQLEELESKLD--ELAEELAE--LEE 344

Query: 446 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQ 505
           + EE+      L+  L  L+ + ++    + +LE ++ +   L     +L+ ++  +  +
Sbjct: 345 KLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNE 401

Query: 506 KLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKD-ERDSLRQ 564
              L    ++L+  + + + E        EEL K+ E   ++ +       + E + L++
Sbjct: 402 IERLEARLERLEDRRERLQQE-------IEELLKKLEEAELKELQAELEELEEELEELQE 454

Query: 565 ERDAMRDQHKRDVDSLNREREEF 587
           E + + +  +   + L    +  
Sbjct: 455 ELERLEEALEELREELEEAEQAL 477

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 75/352 (21%), Positives = 148/352 (42%), Gaps = 53/352 (15%)

Query: 416 VERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAK 475
           VER  +++E     IA   E D KK   +K  EE+  ++ ++++    +DEK++Q+    
Sbjct: 153 VERRKIIDE-----IAGVAEFDRKK---EKALEELEEVEENIERLDLIIDEKRQQL---- 200

Query: 476 DKLEAMKSEAGELSVLEIKLKE-ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKR 534
           ++L   + +A     L  + +E E   +  +K  L  + + ++ + A  E E E + E+ 
Sbjct: 201 ERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260

Query: 535 EELRKEAERVAVERVVVSKSLKDERD---------------SLRQERDAMRDQHKRDVDS 579
            EL K  E +      ++K +KD  +                +     ++ ++ +   D+
Sbjct: 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 580 LNRER--EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRE 637
             R    E  ++K++ E  E   +I++ER         ++  L     + +EELE    E
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERK--------RRDKLTEEYAELKEELEDLRAE 372

Query: 638 REKAFEEEKMREFQQISSLKEKAEK----------ELEQVTLEIKRLDLERMEINMDRQR 687
            E   ++E      ++   +EK EK          EL+++  E++RL  E  ++N     
Sbjct: 373 LE-EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAG 431

Query: 688 RDREWAELNNS----IEELMVQRQKLEEQRQLLHADREEIQAESERLKKLED 735
            + +  EL         E+  Q  KLE+    L    +E+    E   ++E 
Sbjct: 432 IEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 47.0 bits (112), Expect = 6e-05
 Identities = 107/461 (23%), Positives = 195/461 (42%), Gaps = 40/461 (8%)

Query: 78  EKKELASKYEQIKASAEAAELLQ---KHDRASHLSAIAEARKREESLKKTLGVEKECIAS 134
           E+ +L ++     A AEA E  +   +         + E R   ++  +     +E    
Sbjct: 294 ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADD 353

Query: 135 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 194
           LE+   E+R E+AE     +S+  EAR  VE+ +++  E E ++        +A     +
Sbjct: 354 LEERAEELREEAAE----LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGN 409

Query: 195 AERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQ--QEHERLLDAQ 252
           AE  L+E+    D+L  R A  +A      RE + E ++L +  K  +  Q  E     +
Sbjct: 410 AEDFLEELREERDELREREAELEATLRT-ARERVEEAEALLEAGKCPECGQPVEGSPHVE 468

Query: 253 TLLNEREDHILSKLQELSRKEKELEASRANVEEKF---KALNEEKSNLDLTLVSLLKREE 309
           T+  +RE     +++EL  + ++LE     VEE+    + L E +  ++         EE
Sbjct: 469 TIEEDRE-----RVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEE 523

Query: 310 AVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA 369
            + ER  ++++K ++    +E  A  E+   +K  A  E+     +   E    +  KLA
Sbjct: 524 LIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA-EEAREEVAELNSKLA 582

Query: 370 E--DEIEKKRRAWELRDL--DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK 425
           E  + IE   R   L     D     E L E+   L   +    ++  +  ER   LE +
Sbjct: 583 ELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAE 642

Query: 426 ----------ENKLIAFEKEADLKKSLLQKEKE------EVNIIKSDLQKSLSSLDEKKK 469
                     E+K  A E    +++ L +  +E      E+  ++++L + L  L E+++
Sbjct: 643 FDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENEL-EELEELRERRE 701

Query: 470 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELM 510
            +    + LEA+  EA EL  +   L+ EL     + LE M
Sbjct: 702 ALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLERM 742

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 46.9 bits (111), Expect = 6e-05
 Identities = 85/636 (13%), Positives = 217/636 (34%), Gaps = 14/636 (2%)

Query: 76   ILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKT-LGVEKECIAS 134
            + E++E   K E+ +      EL +  +         +    +++LK     +E +    
Sbjct: 414  LSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSED 473

Query: 135  LEKAVHEIRAESAETKVAADSKFAEARCMVENAQ--KKFAEAEAKLHAAESLQAEANRYH 192
            L K    ++       +    K  EA      A+       A  K      + + A R  
Sbjct: 474  LLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGVGLRIISAAGRGG 533

Query: 193  RSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 252
                      VA    +   +++   + +E+++ +    +     +  +  +    L  +
Sbjct: 534  DLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRALTELPLPARTFVLLDPLLKLPLK 593

Query: 253  TLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVI 312
            ++       I   L      +  LEA   +   K      + + L   L S   +E  + 
Sbjct: 594  SIAVL---EIDPALNLAQLNKATLEADEDDKRAKVVEGILKDTELTKLLESAKAKESGLR 650

Query: 313  EREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE 372
            +  +  +   +K  +        +    ++ +     +   K      +  IK K    +
Sbjct: 651  KGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAESELAKNEILRRQEEIKKKEQRIK 710

Query: 373  IEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAF 432
             E K+   E  +L   + +E+  +   +L++  + + +KE++  +     EE+E +    
Sbjct: 711  EELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSEL 770

Query: 433  EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 492
              +        +K ++     + +  K  +  +E +      K++ E ++ E   +   E
Sbjct: 771  SLKEKELAEEEEKTEKLKVEEEKEE-KLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 829

Query: 493  IKLKEELDVVRAQKLELMVETDKLQLEK---AKFEAEWEMIDEKREELRKEAERVAVERV 549
               +EEL+ +  +  E        + E     +   + E++ E   +  +  E+  ++  
Sbjct: 830  KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQ-KLKDE 888

Query: 550  VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF---MNKMVHEHSEWFTKIQQER 606
            + SK  K++ +    E ++ +D    + ++   ER      +        E     + + 
Sbjct: 889  LESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADE 948

Query: 607  ADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQ 666
             +     + ++ +    +   +EEL +        FEE++ R  +     +   E++ E 
Sbjct: 949  KEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKEL 1008

Query: 667  VTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 702
            +   I+       E        +R   ++   +E  
Sbjct: 1009 LREIIEETCQRFKEFLELFVSINRGLNKVFFYLELG 1044

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 46.8 bits (111), Expect = 6e-05
 Identities = 100/531 (18%), Positives = 185/531 (34%), Gaps = 43/531 (8%)

Query: 227 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEK 286
           +I+    L  ++   ++    L    + L E  +  L +  EL  + K LE      E +
Sbjct: 70  LIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAENE 129

Query: 287 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIAN 346
                EE   L       L  E   ++ E   Q KE K  +S       + +E+Q    N
Sbjct: 130 AAEAEEEAKLLKDK----LDAESLKLQNEKEDQLKEAKESIS---RIKNDLSEMQCRAQN 182

Query: 347 HESALRVKQSEFEA-----ELAIKYKLAEDEIEKKRRAWELRDLDLGQR----EESLLER 397
            ++ L++ +SE E      E   K     ++  +   + +    D   +    EE L   
Sbjct: 183 ADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRY 242

Query: 398 EHDLEVQ----------SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSL--LQK 445
           E D EV                +      E   L   KE+  +  E+  DL+  L   +K
Sbjct: 243 EQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRLERFEK 302

Query: 446 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL---EAMKSEAGELSVLEIKLKEELDVV 502
            +E++  ++ + +K  + L   K  +      L   + +      L   E++LKE+   +
Sbjct: 303 MREKLADLELEKEKLENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSI 362

Query: 503 RAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 562
            +   +L     +LQLE+ K  +E   + +K E L+    R+     +V+K     R  L
Sbjct: 363 SSSAKQLETTLQQLQLERQKAVSEILELKKKLEALKALVRRLQRRLTLVTKERDGLRAIL 422

Query: 563 RQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLEN 622
                 + +           E  E + + V  H           A     +   + D+  
Sbjct: 423 NSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHL----------AKMENQLSELEEDVG- 471

Query: 623 CIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEIN 682
             +K R     +  +  K       R    +         ++E +  E  RL  E+  + 
Sbjct: 472 -QQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLLE 530

Query: 683 MDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKL 733
           M  +    +     +  + L +      E  Q+     E +QAE E+LK+ 
Sbjct: 531 MKLEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQTIEALQAECEKLKER 581

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated

 Score = 46.5 bits (111), Expect = 7e-05
 Identities = 47/304 (15%), Positives = 115/304 (37%), Gaps = 61/304 (20%)

Query: 387 LGQREESLLEREHDL-EVQSRALVDKEK-----DLVERSHLLEEKENKLIAFEKEADLKK 440
           L   ++ +LE  H+L  V    L ++        L      L E  +KL ++  + +  +
Sbjct: 14  LKSYKDEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLR 73

Query: 441 SLLQKEK--------EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 492
              +K          ++V      ++K +  L+E+  ++     +LE            +
Sbjct: 74  EEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWGNFD 133

Query: 493 IKLKEELD----------VVRAQKLELMVETDKLQLEKAKFEAEWEMI-----DEKREEL 537
           + L   L           V   +  EL +E+D   +E    +  +  +      E  +E+
Sbjct: 134 LDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVVLKELSDEV 193

Query: 538 RKEAERVAVERVVVS--KSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEH 595
            +E +++  ER+ +    +  +    +++E           ++ + +ERE  + ++    
Sbjct: 194 EEELKKLGFERLELEEEGTPSELIREIKEE-----------LEEIEKERESLLEELK--- 239

Query: 596 SEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAF------EEEKMRE 649
                ++ ++  + LL +          IE  R E  S F + +K F       E+++++
Sbjct: 240 -----ELAKKYLEELLALYE-----YLEIELERAEALSKFLKTDKTFAIEGWVPEDRVKK 289

Query: 650 FQQI 653
            +++
Sbjct: 290 LKEL 293

Length = 646

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 8e-05
 Identities = 68/357 (19%), Positives = 146/357 (40%), Gaps = 43/357 (12%)

Query: 370 EDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 429
             E EK  R   L   +  + E   L +E +   + +  ++++   +E    LE+   ++
Sbjct: 204 RREREKAERYQALLK-EKREYEGYELLKEKEALERQKEAIERQLASLEEE--LEKLTEEI 260

Query: 430 IAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSS-LDEKKKQVNCAKDKLEAMKSEAGEL 488
              EK  +  + LL++  +++  +  + Q  +   + E + ++   +  +   + E  + 
Sbjct: 261 SELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDA 320

Query: 489 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVER 548
                KL+ E+D + A+  EL  E ++ +  + K   E+  + E+ E+LR E E V  E 
Sbjct: 321 EERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE- 379

Query: 549 VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 608
                  +DE    R++ + +    KR+++ L RE +                      +
Sbjct: 380 ---FAETRDELKDYREKLEKL----KREINELKRELDRLQ-------------------E 413

Query: 609 FLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVT 668
            L  +  +  DL   I     ++     E+E    E K            K E +LEQ+ 
Sbjct: 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIK------------KQEWKLEQLA 461

Query: 669 LEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 725
            ++ + + E  ++  +  R ++E ++L   + E   Q +  EE+ +   A  E ++A
Sbjct: 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKA 518

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 45.8 bits (109), Expect = 1e-04
 Identities = 105/537 (19%), Positives = 213/537 (39%), Gaps = 75/537 (13%)

Query: 250 DAQTLLNEREDHILSKLQ-ELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKRE 308
           D +  L++ +  I  K + +L  +   LE+  A ++E+ +   E++     T     +  
Sbjct: 184 DQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVL 243

Query: 309 EAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKL 368
           E   ER   L+  E ++   +ET+A  E              +R  +   E EL      
Sbjct: 244 EEHEERREELETLEAEIEDLRETIAETERER-----EELAEEVRDLRERLE-EL------ 291

Query: 369 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 428
            E+E +       L D D     E++  R  +LE +   L      L E     +    +
Sbjct: 292 -EEERDDLLAEAGLDDAD----AEAVEARREELEDRDEEL---RDRLEECRVAAQAHNEE 343

Query: 429 LIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 488
             +  ++AD  +   ++ +EE   ++S+L+++  ++++        ++++E ++ E  EL
Sbjct: 344 AESLREDADDLEERAEELREEAAELESELEEAREAVED-------RREEIEELEEEIEEL 396

Query: 489 SVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR---------- 538
                    +L        EL  E D+L+  +A+ EA      E+ EE            
Sbjct: 397 RERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPE 456

Query: 539 -----KEAERVAV--ERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 591
                + +  V    E     + L+ E + L +E + + ++ +R  D +  E        
Sbjct: 457 CGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDR------ 510

Query: 592 VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQ 651
                    ++++ R D    +E    +    IE++RE  E   RER    E E   + +
Sbjct: 511 -------IERLEERRED----LEELIAERRETIEEKRERAEEL-RERAAELEAEAEEKRE 558

Query: 652 QISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDR---EWAELNNSIEELMVQRQK 708
             +  +E+AE+  E    E+  L+ +  E+    +  +R     A + ++ +E+   R+K
Sbjct: 559 AAAEAEEEAEEARE----EVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREK 614

Query: 709 LEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ--RSRLEHSQKKISAK 763
            E   +L    RE +  + ER ++LE      D   + E +  + R E   +++  K
Sbjct: 615 REALAELNDERRERLAEKRERKRELEA---EFDEARIEEAREDKERAEEYLEQVEEK 668

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 44.7 bits (106), Expect = 3e-04
 Identities = 43/206 (20%), Positives = 97/206 (47%), Gaps = 13/206 (6%)

Query: 532 EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 591
           E + ELR+    + V R+   + L++E + L++E     ++ +     L  E EE + ++
Sbjct: 217 ELKAELRELELALLVLRL---EELREELEELQEELKEAEEELEELTAELQ-ELEEKLEEL 272

Query: 592 VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQ 651
             E SE   +I++ + + L  +  +   LE   +  RE L +  R+ E+   +      +
Sbjct: 273 RLEVSELEEEIEELQKE-LYALANEISRLEQQKQILRERLANLERQLEELEAQ-----LE 326

Query: 652 QISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEE 711
           ++ S  ++  +EL ++  +++ L  E   +  + +  + E  EL + +EEL    ++LE 
Sbjct: 327 ELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEEL---EEQLET 383

Query: 712 QRQLLHADREEIQAESERLKKLEDLK 737
            R  +     +I + +  +++LE   
Sbjct: 384 LRSKVAQLELQIASLNNEIERLEARL 409

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.5 bits (103), Expect = 6e-04
 Identities = 47/258 (18%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 516 LQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH-- 573
             L      AE + + E+ E L++E   +  E     + +++  D L QE      +   
Sbjct: 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSEL----RRIENRLDELSQELSDASRKIGE 720

Query: 574 -KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELE 632
            +++++ L +E E+   + + E  E  + ++QE  +    ++ + ++LE  IE+  E+L 
Sbjct: 721 IEKEIEQLEQEEEKL-KERLEELEEDLSSLEQEIEN----VKSELKELEARIEELEEDLH 775

Query: 633 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREW 692
                              +I +   K E+E+ ++   ++ ++ +   + ++++  ++E 
Sbjct: 776 KLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835

Query: 693 AELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK-KLEDLKIAVDYMAVSEMQRS 751
            EL     +L  Q + +E++ + L+  +EE++ E E L+  L DL+       + ++++ 
Sbjct: 836 QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLE-----SRLGDLKKE 890

Query: 752 RLEHSQKKISAKRHLNQQ 769
           R E   +    +R + + 
Sbjct: 891 RDELEAQLRELERKIEEL 908

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown]

 Score = 43.7 bits (103), Expect = 6e-04
 Identities = 125/685 (18%), Positives = 238/685 (34%), Gaps = 80/685 (11%)

Query: 109 SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQ 168
           + I EA K   +  K L   +   A L +   E+RA+    +                A 
Sbjct: 195 NEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIR----------------AL 238

Query: 169 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREII 228
           +   E   +L   + L+ E  R         +E+     D   R+   +A  ++ E EI 
Sbjct: 239 RDAVELWPRLQEWKQLEQELTRR-------REELATFPRDGVLRLEKREAHLQKTEAEID 291

Query: 229 RERQSLSDRKKILQQ---EHERLLDAQTLLNEREDHILSKLQELSRKEKELEAS-RANVE 284
                L++ K +  Q     E +L A   L+++   I +   EL+     +EA  R   E
Sbjct: 292 ALLVRLAELKDLASQLIPAKEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEE 351

Query: 285 EKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKII 344
                   E+ +   +L  +L+ + +  E + +     ++L   +      E    Q++ 
Sbjct: 352 AAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRL- 410

Query: 345 ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD-----LGQREESLLEREH 399
           A+ E  +R      E ++A   ++ + E  +    ++ RD         + +++  ER+ 
Sbjct: 411 ADDEEEVRAGDEAREEKIAANSQVIDKE--EVCNLYDRRDTAWQKQRFLREKQTAFERQK 468

Query: 400 DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 459
               +  AL      LV  S LL      LI     A  +   L         IKS  + 
Sbjct: 469 TEHTKIIALRLAGMLLVALSRLL----TSLIFQIIFAVAQIVFL------SAEIKSSSRA 518

Query: 460 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL--DVVRAQKLELMVETDKLQ 517
                 E+K     A   +    +       L     + L    +R    +L    D+L+
Sbjct: 519 V----REEK----AAVTDIPEELARLLITDELPELAVDLLVQSRIRQHWQQLRKALDQLE 570

Query: 518 LEKAKFEAEWEMIDEKREELRKEAERVAVE---RVVVSKSLKDERDSLRQERDAMRDQHK 574
                 E  +   +    E + E E    E      +S   + +  S  ++      Q K
Sbjct: 571 AAYEALEGRFAAAEAAMAEWQSEWEEALDELGLSRELSPEQQLDILSTMKDLKK-LMQKK 629

Query: 575 RDVD----SLNREREEFMNKMVHEHSE---------WFTKIQQERADFLLGIEMQKRDLE 621
            ++      L  E+  F  ++    +              +Q+ R    L  E  +  LE
Sbjct: 630 AELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALE 689

Query: 622 NCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEI 681
             IE R +EL    R   +   +E +  F   ++  E A +E  +   ++ + +     +
Sbjct: 690 GNIE-RTKELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESL 748

Query: 682 NMDRQRRDREWAELNNSIEELMV---QRQKLEEQRQLLHADREEIQAE----SERLKKLE 734
               +    E  EL+ S+++  +   +   LEE    L  + EE+ A+    S ++ +LE
Sbjct: 749 EAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLE 808

Query: 735 DLKIAVDYMAVSEMQRSRLEHSQKK 759
                 +     E  +  LE   +K
Sbjct: 809 GGGTVAELRQRRESLKEDLEEKARK 833

Length = 984

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 40/230 (17%), Positives = 79/230 (34%), Gaps = 10/230 (4%)

Query: 109 SAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQ 168
             I E + +   L+K L   +  IASLE  +  I       K+        AR  +   +
Sbjct: 52  KKIREQQDQRAKLEKQLKSLETEIASLEAQL--IETADDLKKLRKQIADLNAR--LNALE 107

Query: 169 KKFAEAEAKLHAAESLQAEANRYHRS---AERKLQEVVAREDDLSRRIASFKADCEEKER 225
            +  E   +L  AE L A   R  R+   A     E   R   L+    +      E+  
Sbjct: 108 VQEREQRRRL--AEQLAA-LQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERID 164

Query: 226 EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEE 285
            +    + L+  +  +  E   L    +    ++  +   L+E  +   +L +  +  ++
Sbjct: 165 ALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQK 224

Query: 286 KFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASK 335
           K + L   +S L   + S         E  A+ +    +   ++     +
Sbjct: 225 KLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGE 274

Length = 420

>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC

 Score = 43.4 bits (102), Expect = 8e-04
 Identities = 90/622 (14%), Positives = 193/622 (31%), Gaps = 67/622 (10%)

Query: 177 KLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSD 236
            L     L        +S   K + +  R   L+           E+++ + +E + L +
Sbjct: 174 PLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLRE 233

Query: 237 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSN 296
             +  QQ H  L   +    E+       L++L  + +EL A  A +EE  + +N     
Sbjct: 234 ALQQTQQSHAYLTQKREAQEEQ-LKKQQLLKQLRARIEELRAQEAVLEETQERIN----- 287

Query: 297 LDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQS 356
                                  +K   L    + +      +I++      + L+ K  
Sbjct: 288 ---------------------RARKAAPLAAHIKAVT-----QIEQQAQRIHTELQSKMR 321

Query: 357 EFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 416
                L  +    + +   + +   L+ L     +E  +   H++    R +  ++  L 
Sbjct: 322 SRAKLLMKRAAHVKQQSSIEEQRRLLQTL---HSQEIHIRDAHEVATSIREISCQQHTL- 377

Query: 417 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNC-AK 475
              H+   ++ K    +K   L K L   ++E+  I                 +     +
Sbjct: 378 -TQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQ 436

Query: 476 DKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKRE 535
            +   + + A   +    KL++      AQ L+   +  + + +    E   + +   R 
Sbjct: 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARL 496

Query: 536 ELRKEAERVAVERVV---VSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 592
              +E         +    ++   D    L +        + +   S      +  ++  
Sbjct: 497 LELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERK 556

Query: 593 HEHSEWFTKIQQERADFLLGIEMQKRDLENC-IEKRREELESSFREREKAFEEEKM-REF 650
                   K Q +       I  Q  +     I   +          EK  E E M    
Sbjct: 557 Q---RASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACE 613

Query: 651 QQISSLKEKAEKELEQVTLE---------IKRLDLERMEINMDRQRRDREWAELNNSIEE 701
           Q     K + E++L+ V L          +K   L  +++ + ++R       +    +E
Sbjct: 614 QHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKE 673

Query: 702 LMVQRQ----KLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQ 757
           L+  RQ    K++ +++ L   +E +      L++LE          + E  R   E   
Sbjct: 674 LLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELET--------HIEEYDREFNEIEN 725

Query: 758 KKISAKRHLNQQTSLAHADLGS 779
              S    L  +    +  L  
Sbjct: 726 ASSSLGSDLAAREDALNQSLKE 747

All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 1042

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 43.1 bits (102), Expect = 8e-04
 Identities = 42/214 (19%), Positives = 68/214 (31%), Gaps = 26/214 (12%)

Query: 386 DLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 445
            L  R   L E    LE + ++L +  K   + S  +EE   KL     E D +   L+ 
Sbjct: 75  GLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERLSELDEELEDLED 134

Query: 446 EKEEVNIIKS----------------DLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 489
             EE+  +                   L        E    V   +  L     EA  + 
Sbjct: 135 LLEELEPLAYLDFDLSLLRGLKFLLVRLGLVRREKLEALVGVIEDEVALYGENVEASVVI 194

Query: 490 V---LEIKLKEELDVVRAQKLELM-VETDKLQLEKAKFEAEWE------MIDEKREELRK 539
           V       L +   ++     EL  V        +   E E         ++  R EL  
Sbjct: 195 VVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEA 254

Query: 540 EAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 573
            AE++A E + V + L+ E+          R ++
Sbjct: 255 LAEKIAEELLAVREILEIEKALGDVLSKLARTEY 288

Length = 660

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.1 bits (102), Expect = 9e-04
 Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 18/178 (10%)

Query: 616 QKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI---- 671
           ++R++E   E++ EELE    E EKA  E + +E +++    E+  KELE+++ +I    
Sbjct: 675 RRREIEEL-EEKIEELEEKIAELEKALAELR-KELEELEEELEQLRKELEELSRQISALR 732

Query: 672 KRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLK 731
           K L     E+    +R  +   EL     E+    ++LEE  + L     EI+    +++
Sbjct: 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792

Query: 732 KLEDLKIAVDYMAVSE------------MQRSRLEHSQKKISAKRHLNQQTSLAHADL 777
           +L++   A+                     R RLE  +++I+A     +       +L
Sbjct: 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL 850

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 0.001
 Identities = 65/331 (19%), Positives = 143/331 (43%), Gaps = 23/331 (6%)

Query: 361  ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 420
            EL+ +   A  +I +  +  E  + +  + +E L E E DL    + + + + +L E   
Sbjct: 706  ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765

Query: 421  LLEEKENKLIAFEKE-ADLKKSL-------LQKEKEEVNIIKSDLQKSLSSLDEKKKQVN 472
             +EE E  L   E+   DL+  L       +Q E  ++    S ++  L  +++K  ++ 
Sbjct: 766  RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825

Query: 473  CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 532
              K+ LE    E  EL    I LKE++  +  +   L  + ++L+ E  + EA    ++ 
Sbjct: 826  LEKEYLE---KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLES 882

Query: 533  KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 592
            +  +L+KE + +  +     + L+ + + L  + +      KR   S  + + E + + +
Sbjct: 883  RLGDLKKERDELEAQL----RELERKIEELEAQIE-----KKRKRLSELKAKLEALEEEL 933

Query: 593  HEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 652
             E  +   + ++   + L   ++Q       +E+    LE       + +EE   R   +
Sbjct: 934  SEIEDPKGEDEEIPEEELSLEDVQAELQR--VEEEIRALEPVNMLAIQEYEEVLKR-LDE 990

Query: 653  ISSLKEKAEKELEQVTLEIKRLDLERMEINM 683
            +   + K E+E + +   I+  + ++ E+ M
Sbjct: 991  LKEKRAKLEEERKAILERIEEYEKKKREVFM 1021

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 81/371 (21%), Positives = 169/371 (45%), Gaps = 24/371 (6%)

Query: 376  KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDK----EKDLVERSHLLEEKENKLIA 431
              R   L         + L ER   L+ +  +L  +    E  L E S  L +   K+  
Sbjct: 661  APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE 720

Query: 432  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 491
             EKE       L++E+E++     +L++ LSSL+++ + V   K +L+ +++   EL   
Sbjct: 721  IEKEI----EQLEQEEEKLKERLEELEEDLSSLEQEIENV---KSELKELEARIEELEED 773

Query: 492  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 551
              KL+E L+ + A+         ++Q E +K E E   I+ +  E+ ++  R+ +E+  +
Sbjct: 774  LHKLEEALNDLEAR--LSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831

Query: 552  SKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLL 611
             K +++ ++  R +        ++++++LN ++EE + + + E       ++    D   
Sbjct: 832  EKEIQELQE-QRIDLKEQIKSIEKEIENLNGKKEE-LEEELEELEAALRDLESRLGDLKK 889

Query: 612  GIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEI 671
              +  +  L   +E++ EELE+   ++ K   E K +       L E  + + E   +  
Sbjct: 890  ERDELEAQLRE-LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948

Query: 672  KRLDLERMEINMDR-QRRDREWAELNN----SIEELMVQRQKLEEQRQLLHADREEIQAE 726
            + L LE ++  + R +   R    +N       EE++ +  +L+E+R  L  +R+ I   
Sbjct: 949  EELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAIL-- 1006

Query: 727  SERLKKLEDLK 737
             ER+++ E  K
Sbjct: 1007 -ERIEEYEKKK 1016

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 42.5 bits (101), Expect = 0.001
 Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 13/124 (10%)

Query: 163 MVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR--------IA 214
           ++ + ++   E E K   AE+L  EA +     E K +++   ED L           I 
Sbjct: 521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIK 580

Query: 215 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEK 274
             K + +    EII+E + L        + HE L++A+  LN+  +    K ++   K++
Sbjct: 581 EAKKEAD----EIIKELRQLQKGGYASVKAHE-LIEARKRLNKANEKKEKKKKKQKEKQE 635

Query: 275 ELEA 278
           EL+ 
Sbjct: 636 ELKV 639

Length = 782

>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 65/306 (21%), Positives = 108/306 (35%), Gaps = 66/306 (21%)

Query: 381 ELRDL----DLGQREESLLEREHDLEVQSRALVDKEKDLV-ERSHLLEEKENKLIAFEKE 435
           ++RDL       QR+     R    +   R L   E  +      L +      +   KE
Sbjct: 11  QIRDLNEDVSAFQRKFVNEVR--RCDEVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKE 68

Query: 436 -ADLKKSL--LQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLE 492
             DL++ +  L+ E +EV      L+K ++ L+E    ++  K  L+    E  ELS L+
Sbjct: 69  FLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLD 128

Query: 493 IKLKEELDVVRAQKLELMVETDKLQLEKA-KFEAE-WEMIDE--KREELRKEAERVAVER 548
           I  K    +  A+ L+L      +  EK   FE E W       ++ E+ +  E      
Sbjct: 129 IDFK---YLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYIRQAEIEEPLEDPKKTV 185

Query: 549 VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 608
            ++    K++ D +++  D+       DV     ER E ++K                  
Sbjct: 186 FIIFFVGKEDLDKVKKILDSFG-FELYDVPETEGERSELISK------------------ 226

Query: 609 FLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL---- 664
                          + KR EEL+    + E   E+              K   EL    
Sbjct: 227 ---------------VNKRIEELQRVLEQTESHLEKVL-----------VKIADELLAWD 260

Query: 665 EQVTLE 670
           EQV+ E
Sbjct: 261 EQVSKE 266

This family consists of the 116kDa V-type ATPase (vacuolar (H+)-ATPases) subunits, as well as V-type ATP synthase subunit i. The V-type ATPases family are proton pumps that acidify intracellular compartments in eukaryotic cells for example yeast central vacuoles, clathrin-coated and synaptic vesicles. They have important roles in membrane trafficking processes. The 116kDa subunit (subunit a) in the V-type ATPase is part of the V0 functional domain responsible for proton transport. The a subunit is a transmembrane glycoprotein with multiple putative transmembrane helices it has a hydrophilic amino terminal and a hydrophobic carboxy terminal. It has roles in proton transport and assembly of the V-type ATPase complex. This subunit is encoded by two homologous gene in yeast VPH1 and STV1. Length = 707

>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion]

 Score = 41.2 bits (97), Expect = 0.003
 Identities = 57/321 (17%), Positives = 107/321 (33%), Gaps = 45/321 (14%)

Query: 430 IAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 489
           I   K       +L +  +   +   DL++    L E         +KL+  +     LS
Sbjct: 11  IIGLK--SELDPVLAELHDFGLVHLEDLEEGEKGLKEL--------EKLKVAEVAQISLS 60

Query: 490 VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV 549
            L  ++ + L  V+     L      L  E  K EAE + ++E  +   K +  V     
Sbjct: 61  SLLSEVLDYLRSVK----GLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELT- 115

Query: 550 VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF 609
                  +ER S   E          D++ L  E E         + ++   + +     
Sbjct: 116 ----RKLEERLSELDEE-------LEDLEDLLEELEPL------AYLDFDLSLLRGLKFL 158

Query: 610 LLGIEMQKRDLENCIEKRREELESSFREREK-AFEEEKMREFQQISSLKEKAEKELEQVT 668
           L+ + + +R+       + E L     +      E  +      ++   E  +K  +   
Sbjct: 159 LVRLGLVRRE-------KLEALVGVIEDEVALYGENVEASVVIVVAHGAEDLDKVSKI-- 209

Query: 669 LEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL-EEQRQLLHADREEIQAES 727
             +  L  E  E+           +EL   I E+  + + L  E   L     EE+ A  
Sbjct: 210 --LNELGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVR 267

Query: 728 ERLKKLEDLKIAVDYMAVSEM 748
           E L+  + L   +  +A +E 
Sbjct: 268 EILEIEKALGDVLSKLARTEY 288

Length = 660

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 41.1 bits (96), Expect = 0.004
 Identities = 96/684 (14%), Positives = 245/684 (35%), Gaps = 27/684 (3%)

Query: 76   ILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASL 135
            + ++KE   + E+     E     ++ +         +  + EE L     +E E ++S 
Sbjct: 331  LKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSA 390

Query: 136  EKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA 195
             K   E      E +  A      +    +  +++  E    +   E             
Sbjct: 391  AKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEE 450

Query: 196  ERKLQEV----VAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDA 251
            + +L++     +  + +L +     K     K  E +         ++  Q+E +     
Sbjct: 451  KEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGL 510

Query: 252  QTLLNEREDHILSKLQELSRKEKELEASRANVEEK----FKALNEEKSNLDLTLVSLLKR 307
              LL   +D +  ++   + +  +L  + AN +              ++       L++ 
Sbjct: 511  AVLLALIKDGVGLRIISAAGRGGDLGVAVANYKVAISVAVIVEVSAVADEVDERQKLVRA 570

Query: 308  EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYK 367
               +     +    +  L +  +++A  E +    +   +++ L   + +  A++     
Sbjct: 571  LTELPLPARTFVLLDPLLKLPLKSIAVLEIDPALNLAQLNKATLEADEDDKRAKVVEGI- 629

Query: 368  LAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKEN 427
              +D    K            ++  SL E   +      +L +  K+L+    L E+ E+
Sbjct: 630  -LKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQELQEKAES 688

Query: 428  KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGE 487
            +L   E     ++   ++++ +  + K  L+K     D+ ++  +   ++L+ ++ +  E
Sbjct: 689  ELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKE 748

Query: 488  LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE 547
                E K + + +    +K EL ++  +L  E+ K E      +++ +   +E E  A+E
Sbjct: 749  KEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALE 808

Query: 548  RVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERA 607
              +  ++   E + L  E++    + + +  +L  + E+ + K+  E  E   +   +  
Sbjct: 809  EELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 868

Query: 608  DFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQV 667
                 +  ++   E  ++   E  E   +E +K  EEE  ++        E  E+  E+ 
Sbjct: 869  LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEA 928

Query: 668  TLEIKRLDLERME----------INMDRQRRDREWAELNNSIEELM-------VQRQKLE 710
             + +K                     +++  +     L  + EEL         + ++ E
Sbjct: 929  IILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKE 988

Query: 711  EQRQLLHADREEIQAESERLKKLE 734
            E+       +E ++ E + L +  
Sbjct: 989  ERYNKDELKKERLEEEKKELLREI 1012

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|218661 pfam05622, HOOK, HOOK protein

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 121/512 (23%), Positives = 212/512 (41%), Gaps = 97/512 (18%)

Query: 262 ILSKLQELSRKEK----------ELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV 311
           +++ +QEL  KE+           L+       E  K   EEK  L      L K+   +
Sbjct: 146 VMTAIQELMSKEQGSSPSRESAGNLDQQLKKALEDLKEAQEEKDELAQRCHELDKQVLLL 205

Query: 312 IEREASLQKKEQKLLVSQE----------TLASKESNEIQKIIANHESALRVKQSEFEAE 361
            E + SLQ++ +KL                L SK+ N +Q  +       ++++  F  E
Sbjct: 206 QEEKNSLQQENEKLQERLAQLEGSSLGPNQLGSKKYNLLQSQLE------QLQEENFRLE 259

Query: 362 LAIK-YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 420
            A   Y++  +E+EK+         +L  R + L      L  +S+AL D+   L E S 
Sbjct: 260 AARDDYRIKCEELEKEL-------AELQHRNDEL----TSLAAESQALKDEIDVLRESSD 308

Query: 421 LLEEKENKLIAFEKE----ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 476
             ++ E ++  ++K+     DL++ +   E+     +++ +Q     L+E+ K+ N A+ 
Sbjct: 309 KAKKLEAQVETYKKKLEDLNDLRRQVKLLEERNAMYMQNTVQ-----LEEELKKANAARG 363

Query: 477 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREE 536
           +LE  K +  EL     KL EE             + DKL+ E  + E       EK E 
Sbjct: 364 QLETYKRQVQELHA---KLSEE-----------SKKADKLEFEYKRLE-------EKLEA 402

Query: 537 LRKEAERVAVERVVVSKSLKDERDSLRQERDAMR-----DQHKRDVDSLNREREEFMNKM 591
           L+KE ER           L  ERDSLR+  + +R            D+      + +   
Sbjct: 403 LQKEKER-----------LLAERDSLRETNEELRCGQAQQDQLTQADAGTSPSGDNLAAE 451

Query: 592 VH--EHSEWFTKIQQERADFLLGIEMQKR----DLENCIE---KRREELESSFREREKAF 642
           +   E+ E   ++Q E     LG E  +     +L+  +E   +R  ELE+  R   +  
Sbjct: 452 LLPSEYREKLIRLQHENKMLRLGQEGSENERITELQQLLEDANRRNNELETQLRLANQRI 511

Query: 643 EEEKMREFQQISSLKEKAEKELEQVTLEIK-RLDLER-MEINMDRQRRDREWAELNNSIE 700
            E + +      +L+E+  K  +   L+ K    LE+  E N + Q++  +  EL    +
Sbjct: 512 LELQQQVEDLQKALQEQGSKSEDSSLLKSKLEEHLEQLHEANEELQKKREQIEELEPDQD 571

Query: 701 ELMVQRQKLEEQRQLLHADREEIQAESERLKK 732
           + + +  K+ E    L    E+++A  ER KK
Sbjct: 572 QNLSR--KIAELEAALQKKDEDMRAMEERYKK 601

This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the human gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three human HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes, whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head. Length = 713

>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein

 Score = 40.9 bits (96), Expect = 0.004
 Identities = 42/247 (17%), Positives = 80/247 (32%), Gaps = 19/247 (7%)

Query: 78   EKKELASKYEQIKASAEAAELLQKHDRASHLSA---IAEARKREESLKKTLGVEKECIAS 134
            E  E        KA+A AA   Q        +A   +       E++   L    + + +
Sbjct: 803  ESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHT 862

Query: 135  LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 194
            LE AV E+R  +           AE R     A+    EA      A +   EA+   R+
Sbjct: 863  LEVAVRELRHAATRA--------AEQRARAARAESDAREAAEDAAEARAEAEEASLRLRT 914

Query: 195  AERKL----QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLD 250
             E  +     E+ AR  +    +    A    +   +     +  + +   +++      
Sbjct: 915  LEESVGAMVDEIRARLAETRAAL----ASGGRELPRLAEALATAEEARGRAEEKRAEADA 970

Query: 251  AQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEA 310
                  E  DH + +L+E +      +A       +  A    ++ L +   +     + 
Sbjct: 971  TLDERAEARDHAIGQLREFALTGLLEDALPDTEVPELDAKWTIEAALKVARRTEAALLQV 1030

Query: 311  VIEREAS 317
              + EA 
Sbjct: 1031 ADDDEAL 1037

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length [Hypothetical proteins, Conserved]. Length = 1353

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1118
PRK02224	880	chromosome segregation protein; Provisional	99.44
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.32
PRK02224	880	chromosome segregation protein; Provisional	99.2
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.13
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.08
PRK03918	880	chromosome segregation protein; Provisional	98.91
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.81
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.71
PRK03918	880	chromosome segregation protein; Provisional	98.66
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	98.55
PRK01156	895	chromosome segregation protein; Provisional	98.48
PRK01156	895	chromosome segregation protein; Provisional	98.39
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.35
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.3
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.28
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.28
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	97.9
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.89
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.88
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.8
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	97.68
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.67
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	97.62
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	97.47
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.12
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	96.97
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.88
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.81
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.38
PRK11637	428	AmiB activator; Provisional	96.38
PRK12704	520	phosphodiesterase; Provisional	96.37
PRK11637	428	AmiB activator; Provisional	96.35
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	96.25
KOG0964	1200	consensus Structural maintenance of chromosome pro	96.18
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.18
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.04
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	95.97
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	95.94
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.8
PRK00106	535	hypothetical protein; Provisional	95.74
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.41
KOG0018	1141	consensus Structural maintenance of chromosome pro	95.32
PHA02562	562	46 endonuclease subunit; Provisional	95.17
PRK12704	520	phosphodiesterase; Provisional	95.16
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	94.93
PRK00106	535	hypothetical protein; Provisional	94.91
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	94.73
PRK04863	1486	mukB cell division protein MukB; Provisional	94.64
PHA02562	562	46 endonuclease subunit; Provisional	94.3
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	94.05
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	93.41
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.62
KOG0996	1293	consensus Structural maintenance of chromosome pro	92.53
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	92.5
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	91.75
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	91.25
PF00038	312	Filament: Intermediate filament protein; InterPro:	90.66
PRK12705	508	hypothetical protein; Provisional	90.04
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	89.6
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	89.27
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	89.13
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	87.74
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	87.6
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	85.9
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	85.67
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	85.1
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	83.27
PRK09039	343	hypothetical protein; Validated	82.95
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	82.29
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	81.45
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	80.95
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	80.95
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	80.64
PF13863	126	DUF4200: Domain of unknown function (DUF4200)	80.21
PRK04863	1486	mukB cell division protein MukB; Provisional	80.17

>PRK02224 chromosome segregation protein; Provisional

Probab=99.44  E-value=7.9e-07  Score=107.04  Aligned_cols=147  Identities=15%  Similarity=0.202  Sum_probs=60.0

Q ss_pred             HHHhHHHHHHHHHhhhhhhh---hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhh
Q 001234          131 CIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED  207 (1118)
Q Consensus       131 CVadLEKAL~emr~E~AevK---~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~  207 (1118)
                      .+..++..+..+...+.+..   -....++.+.+.-+..++.+...+...+..+....+..+-+...+..++.+++...+
T Consensus       252 ~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l~  331 (880)
T PRK02224        252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLE  331 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444443321   122333333333333333333333333333333333333344444444555554444


Q ss_pred             HHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHH
Q 001234          208 DLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE  284 (1118)
Q Consensus       208 ~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie  284 (1118)
                      .++.....+..+.+.+..       .+...++.+.+.++.+.....-+..-+..+......+..++.++++.+..++
T Consensus       332 ~~~~~l~~~~~~~e~~~~-------~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~  401 (880)
T PRK02224        332 ECRVAAQAHNEEAESLRE-------DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG  401 (880)
T ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444433333333323222       2333333333333333333333444444444444455555555555544444

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.32  E-value=2.7e-05  Score=101.25  Aligned_cols=498  Identities=21%  Similarity=0.273  Sum_probs=268.3

Q ss_pred             hhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhh--
Q 001234          218 ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKS--  295 (1118)
Q Consensus       218 ~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~--  295 (1118)
                      ......++++..+++.+...-|.=...++++.+.+.-|...++.++.-.+...+++-.|++....++.+.....+-+.  
T Consensus       964 ~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~ 1043 (1930)
T KOG0161|consen  964 NKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAK 1043 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444433333333334455555555555555555555555555555555555555554444443331  


Q ss_pred             -----hhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhh--hHHHHHHHH-----------------HhHHHH
Q 001234          296 -----NLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKE--SNEIQKIIA-----------------NHESAL  351 (1118)
Q Consensus       296 -----dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE--~~EIQKLld-----------------eh~a~L  351 (1118)
                           ++...-..+..-......+...|.++|-+|..++.++..-.  ....|+.+.                 ...+.+
T Consensus      1044 rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ 1123 (1930)
T KOG0161|consen 1044 RKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKA 1123 (1930)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 11111111122223344455555666666666665554322  122222222                 234556


Q ss_pred             hhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHhHHHHH----HhhhhHHHHhhhhHH
Q 001234          352 RVKQSEFEAELAIKYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERSHLLEE  424 (1118)
Q Consensus       352 ~~Kk~EFElElE~krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----EKEkdl~~Ksk~LKE  424 (1118)
                      +..++++..+++....-+++-......-.   .++|.++..+-..+.+.....+.+...+.    +.=.++.+-+..++.
T Consensus      1124 ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~ 1203 (1930)
T KOG0161|consen 1124 ERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQK 1203 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66677777777777776666643333333   35566666555555555444444444443    223445555666666


Q ss_pred             HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001234          425 KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA  504 (1118)
Q Consensus       425 kEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~  504 (1118)
                      ....+......++.+-..|..+-..+...+.++++..-.++   .++.+.+.++.-...-++++..-.++|..|+..+=.
T Consensus      1204 ~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~ 1280 (1930)
T KOG0161|consen 1204 DKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSR 1280 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence            66666666666666666777777777777777777776665   456666777777777777788888888888888888


Q ss_pred             HHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 001234          505 QKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER  584 (1118)
Q Consensus       505 Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ek  584 (1118)
                      |.++....+..+-..+..|+.+-+.+   +.++    ...+..+-++..-+.    ++..+.+.++.+|.-+.+....-.
T Consensus      1281 ~lee~e~~~~~~~r~~~~~~~qle~~---k~ql----e~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~~~~l~ 1349 (1930)
T KOG0161|consen 1281 QLEEAEAKLSALSRDKQALESQLEEL---KRQL----EEETREKSALENALR----QLEHELDLLREQLEEEQEAKNELE 1349 (1930)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888877766   3333    333444444443332    455567777777776666654211


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH------------------------------
Q 001234          585 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS------------------------------  634 (1118)
Q Consensus       585 EsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~------------------------------  634 (1118)
                      -. ..+-.-+=+.|-.|++....+-+-+++.-|+.|...++.-++.+|-.                              
T Consensus      1350 r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~ 1428 (1930)
T KOG0161|consen 1350 RK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRA 1428 (1930)
T ss_pred             HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            00 11112233445555555555555555555555555555444444322                              


Q ss_pred             ----HHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHH
Q 001234          635 ----FREREKAFEE---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQ  707 (1118)
Q Consensus       635 ----L~EREk~FEe---ek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~  707 (1118)
                          |..+-+.|+.   +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-..|...|.+|..+-.
T Consensus      1429 ~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~ 1508 (1930)
T KOG0161|consen 1429 AVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKD 1508 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2222233321   112233444555555666666666666666555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHh
Q 001234          708 KLEEQRQLLHADREEIQAESERL  730 (1118)
Q Consensus       708 KLk~QRE~~~~ERe~fl~~vEkl  730 (1118)
                      -+-.-...+...+..+-..++.+
T Consensus      1509 e~~k~v~elek~~r~le~e~~el 1531 (1930)
T KOG0161|consen 1509 EGGKRVHELEKEKRRLEQEKEEL 1531 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555544444333

>PRK02224 chromosome segregation protein; Provisional

Probab=99.20  E-value=4.7e-05  Score=92.12  Aligned_cols=93  Identities=14%  Similarity=0.207  Sum_probs=64.4

Q ss_pred             HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 001234          114 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR  193 (1118)
Q Consensus       114 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s  193 (1118)
                      ...|.+=+.+.+|+..  +-.+...+.+.+..+..++-...+++......+..  ....++...|..+...++++....+
T Consensus       148 p~~R~~ii~~l~~l~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~  223 (880)
T PRK02224        148 PSDRQDMIDDLLQLGK--LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE  223 (880)
T ss_pred             HHHHHHHHHHHhCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578889999999833  35567778888888888888888888888777766  2245566667777777776666666


Q ss_pred             HHhhhhHHHhhhhhHHH
Q 001234          194 SAERKLQEVVAREDDLS  210 (1118)
Q Consensus       194 ~aerKL~eVEaRE~~Lr  210 (1118)
                      .+...+..+...-..|.
T Consensus       224 ~~~~~~~~l~~~l~~l~  240 (880)
T PRK02224        224 RYEEQREQARETRDEAD  240 (880)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66655555554444443

>TIGR00606 rad50 rad50

Probab=99.13  E-value=0.00016  Score=91.98  Aligned_cols=77  Identities=8%  Similarity=0.022  Sum_probs=54.8

Q ss_pred             HHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhH
Q 001234          132 IASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDD  208 (1118)
Q Consensus       132 VadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~  208 (1118)
                      ...|.+.++....+....+-..+..+..+..-+..+..+....+..+..+........+....+.++|..+..-++.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~  472 (1311)
T TIGR00606       396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDR  472 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHH
Confidence            34467777777777777777777788888888888887777777777777777776666666666666655554443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00606 rad50 rad50

Probab=99.08  E-value=0.00025  Score=90.36  Aligned_cols=77  Identities=12%  Similarity=0.170  Sum_probs=38.2

Q ss_pred             HHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHh
Q 001234          175 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ  252 (1118)
Q Consensus       175 E~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q  252 (1118)
                      ...+.+....+..++.....+++.+..++..-..++++.-....+..++...|. +-....+.+..|.+.+..|-..+
T Consensus       576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~  652 (1311)
T TIGR00606       576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS  652 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence            344444444444445555555555555555555555555555555555555555 11244455555555555555554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK03918 chromosome segregation protein; Provisional

Probab=98.91  E-value=0.00058  Score=82.54  Aligned_cols=41  Identities=7%  Similarity=0.165  Sum_probs=22.5

Q ss_pred             hhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhh
Q 001234          217 KADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE  257 (1118)
Q Consensus       217 ~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNq  257 (1118)
                      ..+....+..+..-...+.+|+..+.+.+..+...+.++.+
T Consensus       244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~  284 (880)
T PRK03918        244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE  284 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444445444455666666666666666665555544

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.81  E-value=0.0013  Score=80.12  Aligned_cols=10  Identities=0%  Similarity=-0.120  Sum_probs=4.7

Q ss_pred             HHHHHHHHHh
Q 001234          813 WIKRFADLVF  822 (1118)
Q Consensus       813 WlrKCTskIF  822 (1118)
                      =|.+++..+|
T Consensus      1018 ~i~~~~~~~f 1027 (1179)
T TIGR02168      1018 TLEEAIEEID 1027 (1179)
T ss_pred             HHHHHHHHHH
Confidence            3444445555

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.71  E-value=0.0026  Score=77.69  Aligned_cols=29  Identities=21%  Similarity=0.296  Sum_probs=14.3

Q ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 001234          683 MDRQRRDREWAELNNSIEELMVQRQKLEE  711 (1118)
Q Consensus       683 ~~ke~le~e~aEm~kdIeeL~~ls~KLk~  711 (1118)
                      ..-..+..+..++...++.|...-.++.+
T Consensus       993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168       993 EEYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555444443

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK03918 chromosome segregation protein; Provisional

Probab=98.66  E-value=0.0034  Score=76.12  Aligned_cols=15  Identities=13%  Similarity=0.085  Sum_probs=9.6

Q ss_pred             CCCCcHHHHHHHHHc
Q 001234           20 SPLSDESIWKRLKEA   34 (1118)
Q Consensus        20 ~~~~d~~iWkr~~ea   34 (1118)
                      +++|-..+...+.=|
T Consensus        32 nG~GKStil~ai~~~   46 (880)
T PRK03918         32 NGSGKSSILEAILVG   46 (880)
T ss_pred             CCCCHHHHHHHHHHH
Confidence            556677777666544

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=98.55  E-value=0.014  Score=77.28  Aligned_cols=281  Identities=22%  Similarity=0.226  Sum_probs=134.3

Q ss_pred             ChHHHhhhcHH--HHHHHHHHhhhhhcchhhhhhccccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q 001234           37 DEVSIKRRDKA--ALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEA  114 (1118)
Q Consensus        37 De~S~~rrD~~--aLia~IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEa  114 (1118)
                      +++-|..+|..  .|-..+.+-|+.     .=++--+|--++-|+-.++.....=+.-.++|++.+.+..+.-.-+=.++
T Consensus       836 ~ee~~~~~~~e~~~l~~~l~~~e~~-----~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l  910 (1930)
T KOG0161|consen  836 TEEEMRAKEEEIQKLKEELQKSESK-----RKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKEL  910 (1930)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55556555543  233344444444     55566677777777777777777777777777777777766543221111


Q ss_pred             HHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh-----------------hhhhhhhhHHHHHHHHHhhhhHHHHHh
Q 001234          115 RKREESLKKTLGVEKECIASLEKAVHEIRAESAETK-----------------VAADSKFAEARCMVENAQKKFAEAEAK  177 (1118)
Q Consensus       115 eKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK-----------------~tsesKLaEA~aLv~~~eeKslEvE~K  177 (1118)
                          ..+..-+..+..=.++|++-.+++..++.+.+                 .+.+.++-....=+.+    ..+..+|
T Consensus       911 ----~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~k  982 (1930)
T KOG0161|consen  911 ----KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISK  982 (1930)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence                11111122222222333444444443333332                 1222222222221111    2223333


Q ss_pred             hhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhh
Q 001234          178 LHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNE  257 (1118)
Q Consensus       178 L~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNq  257 (1118)
                      |-.+...+-+++|   .+.-.|+.-+..-..|.+....+.+..+..+..+..++....+.+|.....+-.|...|..+..
T Consensus       983 L~kekk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~ 1059 (1930)
T KOG0161|consen  983 LSKEKKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEE 1059 (1930)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3333333222222   2222334444444455555555555555555556666666666665555555555555544444


Q ss_pred             hhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 001234          258 REDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA  333 (1118)
Q Consensus       258 REe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~  333 (1118)
                      -.....+-+..++.++-+|-.++.+++.....+....-.|..--+.+..-++++..-+..+.+-|+....|...|.
T Consensus      1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555566666666666666655544444333333333333344444555555555555555555554443

>PRK01156 chromosome segregation protein; Provisional

Probab=98.48  E-value=0.01  Score=72.78  Aligned_cols=49  Identities=14%  Similarity=0.174  Sum_probs=22.4

Q ss_pred             hhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001234          684 DRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK  732 (1118)
Q Consensus       684 ~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~  732 (1118)
                      ....+..+...++.+|..|...-..++++-+.+..+...+-.+++.++.
T Consensus       682 ~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~  730 (895)
T PRK01156        682 NLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKK  730 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444555555555554444444444444444444444444433

>PRK01156 chromosome segregation protein; Provisional

Probab=98.39  E-value=0.017  Score=70.86  Aligned_cols=58  Identities=14%  Similarity=0.188  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 001234          658 EKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL  715 (1118)
Q Consensus       658 E~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~~ls~KLk~QRE~  715 (1118)
                      .....++..+..+..++..+...+..+...+.....++..+|+.|..--.++.++...
T Consensus       670 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~  727 (895)
T PRK01156        670 KEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLES  727 (895)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3445666777777777777777777777777777777777777666544455444444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.35  E-value=0.028  Score=71.85  Aligned_cols=207  Identities=14%  Similarity=0.275  Sum_probs=148.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 001234          484 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR  563 (1118)
Q Consensus       484 ER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK  563 (1118)
                      ++.+|......|.++++.+..+...+.+..+.+..+.....+.-+.+...-+..+-+.+........+..-......++.
T Consensus       594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  673 (1201)
T PF12128_consen  594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE  673 (1201)
T ss_pred             CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999988888888888888888888777777777666666666677777777


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 001234          564 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE  643 (1118)
Q Consensus       564 ~EK~~~r~~~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FE  643 (1118)
                      ..+..-+..+...+..+..+-..|-    .|+..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus       674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~  749 (1201)
T PF12128_consen  674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK  749 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777776665553    455566666666666666566666666666666666666666665555554


Q ss_pred             H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 001234          644 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE  694 (1118)
Q Consensus       644 e-------ek~~EL~~--IN~-lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aE  694 (1118)
                      +       ....+|..  |+- .-..++++++++..++.+++.-|..|..=+.=+...|..
T Consensus       750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~  810 (1201)
T PF12128_consen  750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK  810 (1201)
T ss_pred             HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            4       33344432  221 445567888888899999998888887766666666654

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.30  E-value=0.028  Score=69.34  Aligned_cols=16  Identities=25%  Similarity=0.241  Sum_probs=10.1

Q ss_pred             HHHHHHHHHccCChHH
Q 001234           25 ESIWKRLKEAGLDEVS   40 (1118)
Q Consensus        25 ~~iWkr~~eaG~De~S   40 (1118)
                      .++=..|...||+...
T Consensus       120 ~~~~~~l~~~~~~~~~  135 (1164)
T TIGR02169       120 SEIHDFLAAAGIYPEG  135 (1164)
T ss_pred             HHHHHHHHHcCCCcCc
Confidence            3455568888876543

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.28  E-value=0.039  Score=70.37  Aligned_cols=81  Identities=20%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             chhheehhhhhhhHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhh
Q 001234           73 GLLILEKKELASKYEQIKASAEAAELL---QKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAET  149 (1118)
Q Consensus        73 GLLLiEkKEwtSK~EeLkqa~~eae~~---lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~Aev  149 (1118)
                      ++++.+-..+..+++++...+...+.-   +......+.-.+...+.+-+.++..+..-.++...+...+.++-.+.+.+
T Consensus       228 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~  307 (1163)
T COG1196         228 ALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLL  307 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555566666777777776666533   33444445555666666666676666666667776666666666666666


Q ss_pred             hhhh
Q 001234          150 KVAA  153 (1118)
Q Consensus       150 K~ts  153 (1118)
                      +-..
T Consensus       308 ~~~~  311 (1163)
T COG1196         308 RERL  311 (1163)
T ss_pred             HHHH
Confidence            5433

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.28  E-value=0.031  Score=69.01  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhh
Q 001234          700 EELMVQRQKLEEQRQLLHADREEIQAESERLK  731 (1118)
Q Consensus       700 eeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK  731 (1118)
                      +++...-..|.+|++.+...+..|...|+.|+
T Consensus       982 ~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169       982 EEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334445566666666666666666666665

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=97.90  E-value=0.24  Score=65.59  Aligned_cols=459  Identities=18%  Similarity=0.214  Sum_probs=238.4

Q ss_pred             HHhhhcHHHHHHHHHHhhhhhcc----hhhhhh-ccccchhheeh-------------hhhh---hhHHHHHHHHHHHHH
Q 001234           40 SIKRRDKAALIAYIAKLETECYI----LKIFEH-QHHMGLLILEK-------------KELA---SKYEQIKASAEAAEL   98 (1118)
Q Consensus        40 S~~rrD~~aLia~IskLE~E~~~----~~lydY-QynMGLLLiEk-------------KEwt---SK~EeLkqa~~eae~   98 (1118)
                      +-.+.+.+-|-.+++.|++..--    ...|+- +|||..-+.+.             ..++   |+..++++.+-..+.
T Consensus       861 ~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq  940 (1822)
T KOG4674|consen  861 DSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ  940 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567778888888888887211    111121 45666655543             2333   445566778888888


Q ss_pred             HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q 001234           99 LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL  178 (1118)
Q Consensus        99 ~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL  178 (1118)
                      +|.+....|=--..+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+++++.+..-+.++..-...+....
T Consensus       941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen  941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999988888888888887777665544344456677777777777777778888888888887777765544444332


Q ss_pred             hhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHH---HhchHHHHHHHHHHHHHHHHHhhhh
Q 001234          179 HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKILQQEHERLLDAQTLL  255 (1118)
Q Consensus       179 ~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~q---Re~L~eweKkLqe~eerL~e~q~~L  255 (1118)
                             -.+++..+.+-..          |..++........-|+.++..-   .+.|.....-+......+.+.....
T Consensus      1021 -------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1021 -------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred             -------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                   2333333333332          3333334444444444443221   2333344444444444444444444


Q ss_pred             hhhhHhhHhhHHHHhHhHHHHH----HHhhhHH---HHHHHHhhhhhhhhHhHH--HhhhhHHHHHHHHHH--HHHhHHh
Q 001234          256 NEREDHILSKLQELSRKEKELE----ASRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAVIEREAS--LQKKEQK  324 (1118)
Q Consensus       256 NqREe~~~e~~~~l~~kEkeLE----e~kkkie---~~~~~Lk~ke~dl~~rl~--~l~~rEe~~~~~~~~--Le~KEkE  324 (1118)
                      -++..-.-+..+-...+++-|+    ...+.|.   ..+..|...=+.+....+  .++.-..-...+...  .--+|++
T Consensus      1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred             HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHH
Confidence            4443333333222222222222    2222221   122222222222222221  111111111111110  1124455


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhH---------HHHHHHHHHHHH-hhhh------hhh
Q 001234          325 LLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAWE-LRDL------DLG  388 (1118)
Q Consensus       325 Ll~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~---------eeEle~K~~~~E-~rEv------el~  388 (1118)
                      +..-+-.+.-+|......    +-+.+.....++...|...|.++         +.+|-.++..+. .+|-      +..
T Consensus      1164 i~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~ 1239 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENE 1239 (1822)
T ss_pred             HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            554444455555433322    22333444444444555555555         344445555544 2222      223


Q ss_pred             hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH-------HH-----HHHHHHHHHHHHH
Q 001234          389 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS-------LL-----QKEKEEVNIIKSD  456 (1118)
Q Consensus       389 h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~-------~L-----~~eKEel~~lK~d  456 (1118)
                      +-.+++    +.|..+.+++.-.=.-|..-++.|+..=....++=+.|+.+..       .|     ..|+.++.+++.+
T Consensus      1240 ~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1240 ANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred             HHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence            333333    3444444444333333333333333333333333333333222       12     2347788888888


Q ss_pred             HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 001234          457 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK  533 (1118)
Q Consensus       457 lEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEK  533 (1118)
                      |......+++....|.+-...          +.++|-++|...|..-..+..+.++...|+.-+-+.+.-|.-.-++
T Consensus      1316 i~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1316 ISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888887666666555443          4455578888888888888999999999999999999988876665

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.019  Score=70.05  Aligned_cols=217  Identities=24%  Similarity=0.338  Sum_probs=127.6

Q ss_pred             hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHhHHHHHHhhhhHH-HHhhhh
Q 001234          352 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL  422 (1118)
Q Consensus       352 ~~Kk~EFE---lElE~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkEKEkdl~-~Ksk~L  422 (1118)
                      |.|+-.|+   +|||..|+-+++.-...+..++++|.+   -+.+|  ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus       316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei  395 (1118)
T KOG1029|consen  316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI  395 (1118)
T ss_pred             hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556665   788888888888777777766666543   22333  3334455667777777666654332 223333


Q ss_pred             HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 001234          423 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV  490 (1118)
Q Consensus       423 KEkEksL~aeEK~--le~e-------k~~L~~eKEel~~lK---~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lr  490 (1118)
                      ..+|-.-+-.||.  ++-+       .+|...+.+.|-.+|   ..++--+..|..++.++..--....+-.        
T Consensus       396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~--------  467 (1118)
T KOG1029|consen  396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI--------  467 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence            3333322222221  1111       112222333333332   2333444444555555544443333222        


Q ss_pred             HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 001234          491 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD  557 (1118)
Q Consensus       491 LQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~-------------~~  557 (1118)
                        ..-|++|+.++-|.+..+.|.+.|+++..              |++.-+.+++-||..|..-+             ++
T Consensus       468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s  531 (1118)
T KOG1029|consen  468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS  531 (1118)
T ss_pred             --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence              35689999999999999999999988754              34444445555555444322             56


Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 001234          558 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV  592 (1118)
Q Consensus       558 E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMe  592 (1118)
                      +-+++...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus       532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid  566 (1118)
T KOG1029|consen  532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID  566 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            77788888899999999999999988888777766

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.88  E-value=0.21  Score=64.07  Aligned_cols=230  Identities=21%  Similarity=0.280  Sum_probs=137.1

Q ss_pred             cHHHHHHHHHccCChH--------------HHhhhcHHHHHHHHHHhhhhhcchhhhhhccccchhheehhhhhhhHHHH
Q 001234           24 DESIWKRLKEAGLDEV--------------SIKRRDKAALIAYIAKLETECYILKIFEHQHHMGLLILEKKELASKYEQI   89 (1118)
Q Consensus        24 d~~iWkr~~eaG~De~--------------S~~rrD~~aLia~IskLE~E~~~~~lydYQynMGLLLiEkKEwtSK~EeL   89 (1118)
                      -.||=.-|...|++..              +++..++..|++-++=.       .                .+-.++++.
T Consensus       121 ~~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv-------~----------------~y~~r~~ea  177 (1163)
T COG1196         121 LKDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGV-------S----------------KYKERKEEA  177 (1163)
T ss_pred             HHHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhch-------H----------------HHHHHHHHH
Confidence            3467788888887433              34556666665544321       1                122334444


Q ss_pred             HHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhh
Q 001234           90 KASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQK  169 (1118)
Q Consensus        90 kqa~~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~ee  169 (1118)
                      ...+..++.-|.|    =-.-+.|.+++=+.|++---.- +|-.+|...++.++..+.-.++      -.++.-...+.+
T Consensus       178 ~~~L~~~~~nl~~----~~~~~~el~~~l~~L~~q~~~a-~~y~~l~~e~~~~~~~~~~~~~------~~~~~~l~~~~~  246 (1163)
T COG1196         178 ERKLERTEENLER----LEDLLEELEKQLEKLERQAEKA-ERYQELKAELRELELALLLAKL------KELRKELEELEE  246 (1163)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence            5555555555544    2233567777777777655443 3455778888888877766552      233333444444


Q ss_pred             hhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHH
Q 001234          170 KFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLL  249 (1118)
Q Consensus       170 KslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~  249 (1118)
                      ....+++-+.+....+.++...-..+..+++++.+....++.+-+.+......++.++...++.+..-...+.+.+.++.
T Consensus       247 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~  326 (1163)
T COG1196         247 ELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLE  326 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555666666666667777777777777776666666677788888888888777777777777777766


Q ss_pred             HHhhhhhhhhHhhHhh---HHHHhHhHHHHHHHhhhHHHHH
Q 001234          250 DAQTLLNEREDHILSK---LQELSRKEKELEASRANVEEKF  287 (1118)
Q Consensus       250 e~q~~LNqREe~~~e~---~~~l~~kEkeLEe~kkkie~~~  287 (1118)
                      ..+.-+-.+...+...   ...+......+.......+...
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~  367 (1163)
T COG1196         327 ELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKL  367 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666655   3444444444444443333333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.80  E-value=0.23  Score=62.03  Aligned_cols=86  Identities=16%  Similarity=0.177  Sum_probs=38.2

Q ss_pred             HHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhh------hhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhh
Q 001234          183 SLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKA------DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN  256 (1118)
Q Consensus       183 a~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~------E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LN  256 (1118)
                      ..+++..+....+..+++.++.....+....--+..      +.+.....+....+.+..++.++......+.+.....+
T Consensus       274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~  353 (908)
T COG0419         274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN  353 (908)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555555544443333332      23333333333344444444444444444444444444


Q ss_pred             hhhHhhHhhHHH
Q 001234          257 EREDHILSKLQE  268 (1118)
Q Consensus       257 qREe~~~e~~~~  268 (1118)
                      +...-+.++...
T Consensus       354 ~~~~~~~~~~~~  365 (908)
T COG0419         354 ELAKLLEERLKE  365 (908)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444333

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=97.68  E-value=0.32  Score=60.49  Aligned_cols=322  Identities=19%  Similarity=0.272  Sum_probs=192.2

Q ss_pred             HHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHHhhhhhhH-------HHHHHHH
Q 001234          301 LVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAIK  365 (1118)
Q Consensus       301 l~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~a-----RE~---~EIQKLldeh~a~L~~Kk~EF-------ElElE~k  365 (1118)
                      ...+.-.|-.+..++..|+.+|++...+-+.|--     ++.   ..+|++|+.-    +++...|       |.|+...
T Consensus       182 ~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~L  257 (775)
T PF10174_consen  182 LRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYRL  257 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence            3344455666777788888888888666443322     222   3568887764    3444444       5555444


Q ss_pred             hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHH
Q 001234          366 YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK  445 (1118)
Q Consensus       366 rKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~  445 (1118)
                      +..++---.  -+.-..++++.........|-.  ++.-.=.|..+.-++.+...-|.-....-.....-|+.=+..|-+
T Consensus       258 ~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~  333 (775)
T PF10174_consen  258 RSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRA  333 (775)
T ss_pred             Hhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            443321111  1222333444444444443321  333344455666666666666666666666667777777888888


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001234          446 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA  525 (1118)
Q Consensus       446 eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~  525 (1118)
                      --.....|.+|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|..=..-..|.+.+|.|...-..=+ 
T Consensus       334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd-  412 (775)
T PF10174_consen  334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD-  412 (775)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            8888899999999999999999999999999999999887665444455666666666565666666555543322111 


Q ss_pred             HHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 001234          526 EWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH  593 (1118)
Q Consensus       526 EWE~LDEKRael~------------KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF~~kMeh  593 (1118)
                        ..|++-++.|.            -.++.-..+++.+..-+...+++.-.++..--+.|++++..+...-++|-..+ |
T Consensus       413 --~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-s  489 (775)
T PF10174_consen  413 --RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-S  489 (775)
T ss_pred             --HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-H
Confidence              11222222222            33333333444444444444444444444444667777777777777777655 6


Q ss_pred             hhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhH
Q 001234          594 EHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESS  634 (1118)
Q Consensus       594 Ers~~~eKiq~Erad~l~d~Emqkre---LE~~iqkRqEEiE~~  634 (1118)
                      |+..-+.-++.+-+.+.-+.+-+..+   |+..+++.++++++-
T Consensus       490 Ek~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl  533 (775)
T PF10174_consen  490 EKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKL  533 (775)
T ss_pred             HHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHH
Confidence            77777777777777776666555544   446666666666543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.67  E-value=0.26  Score=59.16  Aligned_cols=44  Identities=18%  Similarity=0.324  Sum_probs=39.6

Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 001234          689 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKK  732 (1118)
Q Consensus       689 e~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vEklK~  732 (1118)
                      .=+.+|-++.|.+|+.-=+-+++-.|+|..++-.++..|++|..
T Consensus       409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~  452 (546)
T PF07888_consen  409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ  452 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999998863

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=97.62  E-value=0.4  Score=59.95  Aligned_cols=63  Identities=19%  Similarity=0.242  Sum_probs=28.2

Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001234          481 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV  544 (1118)
Q Consensus       481 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I  544 (1118)
                      ..++...+..+..+|+...+.++.-. ....+.++++..-..+...|..|.+.-..++......
T Consensus       557 l~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~  619 (908)
T COG0419         557 LKEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL  619 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            33333344444444444444444333 2224444444444444455555555555554444444

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=97.47  E-value=2.6e-05  Score=95.74  Aligned_cols=509  Identities=21%  Similarity=0.266  Sum_probs=0.0

Q ss_pred             HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH-------HHhhhhhhH
Q 001234          111 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA-------EAKLHAAES  183 (1118)
Q Consensus       111 LsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEv-------E~KL~aAea  183 (1118)
                      |-+..-|=+.|.--|.-|++--+--||+-++|..|..+++---+.......+.++-.-++-.++       |.--.+-++
T Consensus        41 ~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~  120 (859)
T PF01576_consen   41 IKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEA  120 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555566666665666777777777777666444443333333333222222221       222234456


Q ss_pred             HHHHHhcchhHHhhhh----HHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001234          184 LQAEANRYHRSAERKL----QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE  259 (1118)
Q Consensus       184 ~~AEa~Rk~s~aerKL----~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqRE  259 (1118)
                      .+++.-++|+.+--.|    ..+.---..|-+.+-.|..|......++..-=.....-+|.....+.-|.+.+.-+..-+
T Consensus       121 ~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e  200 (859)
T PF01576_consen  121 TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE  200 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence            6777777775543222    222222233344444444444444444433333344446666666666666666666666


Q ss_pred             HhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 001234          260 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE  339 (1118)
Q Consensus       260 e~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~E  339 (1118)
                      ..+++.......++.++.++...++..           ...+..|+.          ....-+..|..+...|..-    
T Consensus       201 r~~~el~~~k~kL~~E~~eL~~qLee~-----------e~~~~~l~r----------~k~~L~~qLeelk~~leeE----  255 (859)
T PF01576_consen  201 RQRNELTEQKAKLQSENSELTRQLEEA-----------ESQLSQLQR----------EKSSLESQLEELKRQLEEE----  255 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH----------HHHHHHHHHHhhHHHHHhH----
Confidence            666666666666666555555544333           222222211          0011122233333222211    


Q ss_pred             HHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHH
Q 001234          340 IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV  416 (1118)
Q Consensus       340 IQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~  416 (1118)
                      +     -.+..|..+.+..+.+++..+..++++-++|...   +..-..+|..+-.+   -+.......+.|.+--+.|.
T Consensus       256 t-----r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~  327 (859)
T PF01576_consen  256 T-----RAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLE  327 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             h-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHH
Confidence            0     1345667778888888888888888887776542   22233333333222   23344444556666667777


Q ss_pred             HHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 001234          417 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEI  493 (1118)
Q Consensus       417 ~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a---~~e~q~~qi~ee~E~LkiteeER~E~lrLQs  493 (1118)
                      .++..+.+.-..+.+.--.|+.-+..|+.+-+.+..   +|++..+   .++.+.++++.....++.-          -.
T Consensus       328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~  394 (859)
T PF01576_consen  328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VE  394 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HH
Confidence            777777777777777777787778888877666554   5555444   5566666666544433322          13


Q ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 001234          494 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH  573 (1118)
Q Consensus       494 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~  573 (1118)
                      .+..+.|..-.....+..++-.|+.+.......|+.+.-....|+.|+.++..+.-...+-++ +-++.+.....-.+.+
T Consensus       395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El  473 (859)
T PF01576_consen  395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEEL  473 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHH
Confidence            556677777777777788888888887777777777777777777777777655443333332 2222222111111111


Q ss_pred             HhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 001234          574 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI  653 (1118)
Q Consensus       574 krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~I  653 (1118)
                      +..++-+                          .+-+...|..+.-|+..|+.-+-++++.|.+|+..|++.+..=...|
T Consensus       474 ~~~leE~--------------------------E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l  527 (859)
T PF01576_consen  474 QEQLEEA--------------------------EDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQL  527 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHH
Confidence            1122211                          12223455567778888888899999999999999998776544444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001234          654 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM  703 (1118)
Q Consensus       654 N~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIeeL~  703 (1118)
                      -+|..-+..|           -+.|.++.-.|++++.+..+|.-.++..+
T Consensus       528 ~~le~~LE~E-----------~k~r~~~~r~kkKLE~~l~eLe~~ld~~n  566 (859)
T PF01576_consen  528 ESLEAELEEE-----------RKERAEALREKKKLESDLNELEIQLDHAN  566 (859)
T ss_dssp             --------------------------------------------------
T ss_pred             HHHHhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4443333222           22344455555555555555544444333

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.12  E-value=1.1  Score=54.04  Aligned_cols=96  Identities=18%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001234          493 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ  572 (1118)
Q Consensus       493 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~  572 (1118)
                      +.+-+|...+.+..+..-.++.+|+.++.+-+.   .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus       353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv  428 (546)
T PF07888_consen  353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV  428 (546)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence            455555555554444444567788888887776   68899988777777777655443 56778888887776665555


Q ss_pred             HHhhhhhhhhhHHHHHHhhh
Q 001234          573 HKRDVDSLNREREEFMNKMV  592 (1118)
Q Consensus       573 ~krelEsL~~ekEsF~~kMe  592 (1118)
                      .+.+-|.|..++-+.|.-|.
T Consensus       429 ~qkEKEql~~EkQeL~~yi~  448 (546)
T PF07888_consen  429 AQKEKEQLQEEKQELLEYIE  448 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555444443

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=96.97  E-value=1.8  Score=55.38  Aligned_cols=107  Identities=25%  Similarity=0.258  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 001234          447 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL-EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA  525 (1118)
Q Consensus       447 KEel~~lK~dlEK~~a~~e~q~~qi~ee~E~L-kiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~  525 (1118)
                      ++++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.
T Consensus       357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e  436 (1074)
T KOG0250|consen  357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE  436 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33333334444444444444444444444444 44555555544444556666666666666666666666666655555


Q ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001234          526 EWEMIDEKREELRKEAERVAVERVVVSK  553 (1118)
Q Consensus       526 EWE~LDEKRael~KEa~~I~eEre~lek  553 (1118)
                      |-+.+..+...|.+-...+..+=..+.+
T Consensus       437 e~~~i~~~i~~l~k~i~~~~~~l~~lk~  464 (1074)
T KOG0250|consen  437 EKEHIEGEILQLRKKIENISEELKDLKK  464 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6555656666666666665554444433

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.88  E-value=0.84  Score=48.93  Aligned_cols=178  Identities=19%  Similarity=0.230  Sum_probs=85.3

Q ss_pred             hchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHH
Q 001234          232 QSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAV  311 (1118)
Q Consensus       232 e~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~  311 (1118)
                      +.|..-..+|...+.++-+..+.+..=|.+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|..+
T Consensus        57 erL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~  136 (237)
T PF00261_consen   57 ERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERA  136 (237)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555555555555555555555554444444444444444444444444


Q ss_pred             HHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhH
Q 001234          312 IEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQRE  391 (1118)
Q Consensus       312 ~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~E  391 (1118)
                      +..++.+..-|.+|..+-..|-+=|-.+.+             -.+=+-.++.+-+.|..-|..=..-++--|..+...|
T Consensus       137 e~~E~ki~eLE~el~~~~~~lk~lE~~~~~-------------~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le  203 (237)
T PF00261_consen  137 EAAESKIKELEEELKSVGNNLKSLEASEEK-------------ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLE  203 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhchhHHHHHHHHHHHHHHHHHhhhhhhh-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444332221110             0111122222233333333333344444455566666


Q ss_pred             HHHHhhhhhHHHhHHHHHHhhhhHHHHhhhh
Q 001234          392 ESLLEREHDLEVQSRALVDKEKDLVERSHLL  422 (1118)
Q Consensus       392 ekl~kREqaLe~k~~~lkEKEkdl~~Ksk~L  422 (1118)
                      ..+..-+-.|..--.+.+....+|+.-+..|
T Consensus       204 ~~id~le~eL~~~k~~~~~~~~eld~~l~el  234 (237)
T PF00261_consen  204 KEIDRLEDELEKEKEKYKKVQEELDQTLNEL  234 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6666666666666666666666666555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=96.81  E-value=0.58  Score=50.12  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHH
Q 001234          238 KKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREAS  317 (1118)
Q Consensus       238 eKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~  317 (1118)
                      .-++.+.+.+|-++...+..-+.+.-+..+.|...+.+|+.+...++..-..+.+-+..|..--..|-.-|-.....-..
T Consensus        91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r  170 (237)
T PF00261_consen   91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER  170 (237)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence            34444455555555555555555555556666666666666655555554444444444433333332222222222222


Q ss_pred             HHHhHHhHHHHHHHHhh
Q 001234          318 LQKKEQKLLVSQETLAS  334 (1118)
Q Consensus       318 Le~KEkELl~leEKL~a  334 (1118)
                      .+.-|..+..|..+|..
T Consensus       171 e~~~e~~i~~L~~~lke  187 (237)
T PF00261_consen  171 EDEYEEKIRDLEEKLKE  187 (237)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            23334444445555443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.38  E-value=2  Score=46.82  Aligned_cols=232  Identities=21%  Similarity=0.340  Sum_probs=120.0

Q ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 001234          494 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR  570 (1118)
Q Consensus       494 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek---~~~~E~erLK~EK~~~r  570 (1118)
                      .|...|+.+-.++--|..+.+.|+.+...|...|+..-..+..++.+...+...-.....   .+.+.-..|+.|..-++
T Consensus        58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~  137 (312)
T PF00038_consen   58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK  137 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence            445677777777777777788888888888888887777777776666555433332222   23456677888888888


Q ss_pred             HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 001234          571 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR  648 (1118)
Q Consensus       571 ~~~krelEsL~~ekE-sF~~kMehE-rs~~~eKiq~Erad~l~d~EmqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~  648 (1118)
                      ..|..++..|...-. .+-..|..- ...+..-+..=|           ...+..+.+-+.++|..++-+-......-..
T Consensus       138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~  206 (312)
T PF00038_consen  138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK  206 (312)
T ss_dssp             HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence            888888888876553 222222210 122222233333           3444445555555555555544444333333


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 001234          649 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES  727 (1118)
Q Consensus       649 EL~~IN~lkE~a~kE~Eev~lE~~rLekER~Ei~~~ke~le~e~aEm~kdIee-L~~ls~KLk~QRE~~~~ERe~fl~~v  727 (1118)
                      --..+.+    +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+......+..=|..+-.++
T Consensus       207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~  282 (312)
T PF00038_consen  207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL  282 (312)
T ss_dssp             HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence            2222222    233444444444444444444444455555555555433332 22233334444444444455555565


Q ss_pred             HHhhhhhhhHhHH
Q 001234          728 ERLKKLEDLKIAV  740 (1118)
Q Consensus       728 EklK~ckncg~~~  740 (1118)
                      ..+..+-|-+...
T Consensus       283 ~ey~~Ll~~K~~L  295 (312)
T PF00038_consen  283 REYQELLDVKLAL  295 (312)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhH
Confidence            5555555555444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK11637 AmiB activator; Provisional

Probab=96.38  E-value=1.4  Score=50.59  Aligned_cols=44  Identities=7%  Similarity=0.070  Sum_probs=19.6

Q ss_pred             hhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhH
Q 001234          305 LKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE  348 (1118)
Q Consensus       305 ~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~EIQKLldeh~  348 (1118)
                      ...+.++......+...+.+|..++.+|..+...-=+.+-+-+.
T Consensus        92 ~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~  135 (428)
T PRK11637         92 RETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR  135 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444555555555555554444333333333333

>PRK12704 phosphodiesterase; Provisional

Probab=96.37  E-value=0.15  Score=60.70  Aligned_cols=77  Identities=25%  Similarity=0.325  Sum_probs=47.4

Q ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001234          355 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK  434 (1118)
Q Consensus       355 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK  434 (1118)
                      +.+++.|+...|..++.++..+       +.++..+|..|.+|+..|+.+.+.|..++++|..+-+.|..+++.|...++
T Consensus        59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~  131 (520)
T PRK12704         59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE  131 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455555555555555443       444556666677777777777777777777777777666666666665555


Q ss_pred             HhHH
Q 001234          435 EADL  438 (1118)
Q Consensus       435 ~le~  438 (1118)
                      +++.
T Consensus       132 ~~~~  135 (520)
T PRK12704        132 ELEE  135 (520)
T ss_pred             HHHH
Confidence            5543

>PRK11637 AmiB activator; Provisional

Probab=96.35  E-value=2.9  Score=48.26  Aligned_cols=26  Identities=15%  Similarity=0.394  Sum_probs=15.4

Q ss_pred             hhHHHHHHHHHHHhhhhhHhhhhhhH
Q 001234          596 SEWFTKIQQERADFLLGIEMQKRDLE  621 (1118)
Q Consensus       596 s~~~eKiq~Erad~l~d~EmqkreLE  621 (1118)
                      ..++..+.+-+.+++..|.-.+..|+
T Consensus       158 ~~~l~~i~~~d~~~l~~l~~~~~~L~  183 (428)
T PRK11637        158 LAYFGYLNQARQETIAELKQTREELA  183 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555666666666666666555

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=96.25  E-value=5.3  Score=50.27  Aligned_cols=181  Identities=24%  Similarity=0.231  Sum_probs=86.1

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHh
Q 001234          135 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA  214 (1118)
Q Consensus       135 LEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerl  214 (1118)
                      |-+.|-+|+..+.-.+.+-+..-.+...|..-++.|-..++            +..-.+.+.+.+.+.+++-..|+--  
T Consensus       133 lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~------------~~~~~~~~~~~~~~~e~~~~~le~l--  198 (775)
T PF10174_consen  133 LRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE------------AEEEDNEALRRIREAEARIMRLESL--  198 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc------------chhhhhHHHHHHHHHHHHHHHHHHH--
Confidence            45677778888888888888777777777777655544431            1111122333333333333222211  


Q ss_pred             HhhhhhhhHHHHHHHHHhchHHHHHHHHHHHH-HHH-HHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhh
Q 001234          215 SFKADCEEKEREIIRERQSLSDRKKILQQEHE-RLL-DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE  292 (1118)
Q Consensus       215 Sf~~E~ea~E~~~~~qRe~L~eweKkLqe~ee-rL~-e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~  292 (1118)
                           .+.++.....-|+   .....++-..+ ... -.|..|...+..|.+..+.+..++-++..++..++....--..
T Consensus       199 -----le~~e~~~~~~r~---~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~  270 (775)
T PF10174_consen  199 -----LERKEKEHMEARE---QLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDR  270 (775)
T ss_pred             -----HHHHHHHhhhhhH---HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH
Confidence                 1111111111111   00001100000 000 2455666666666666666666666666665555433221111


Q ss_pred             hhhhhhH-hHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001234          293 EKSNLDL-TLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN  338 (1118)
Q Consensus       293 ke~dl~~-rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~  338 (1118)
                      ....+.. +...+..+-+ ++..+..|..|..||..++-+|......
T Consensus       271 ~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~  316 (775)
T PF10174_consen  271 LDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQ  316 (775)
T ss_pred             HHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            1011111 1111111111 6777778888888888888888766653

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.18  E-value=6.3  Score=50.48  Aligned_cols=300  Identities=23%  Similarity=0.296  Sum_probs=176.8

Q ss_pred             HHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHH---HH
Q 001234          210 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK  286 (1118)
Q Consensus       210 rRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie---~~  286 (1118)
                      |++.++.--|-+-+...|..-=+.+.++=+.|.+..+.|..-|.+=++|      +.-+++.-.++|-++...++   ..
T Consensus       172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~  245 (1200)
T KOG0964|consen  172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED  245 (1200)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            3445566677777777888777888888778888888888777765554      23345556666666665543   33


Q ss_pred             HHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHH
Q 001234          287 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA  363 (1118)
Q Consensus       287 ~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leE---KL~aRE~~EIQKLldeh~a~L~~Kk~EFElElE  363 (1118)
                      +.+.-++-+++.   ..+..++.+.......+..-|..|..|-+   .+.+++..-+++     ++.|..+..+|--+++
T Consensus       246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-----kt~lel~~kdlq~~i~  317 (1200)
T KOG0964|consen  246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-----KTKLELKIKDLQDQIT  317 (1200)
T ss_pred             HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHhh
Confidence            334444433333   33445555666666666555555555433   445555544443     3344444444444433


Q ss_pred             HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHhHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 001234          364 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA  431 (1118)
Q Consensus       364 ~k---rKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkEKEkdl~~K------sk~LKEkEksL~a  431 (1118)
                      --   |++.-..++.=....+.++.++...+   ..+...|..+...+..+..+..||-+|      ++.-+++++=|+.
T Consensus       318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~  397 (1200)
T KOG0964|consen  318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS  397 (1200)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence            21   11121111111122222222222222   123334444444455555555555443      3444667777776


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 001234          432 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV  511 (1118)
Q Consensus       432 eEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~Llk  511 (1118)
                      +=..|   +.-+..-++..+.+.-|++-+...+++...+|..-...+.-++..-.++...-..||++.|..-.....|--
T Consensus       398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR  474 (1200)
T KOG0964|consen  398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR  474 (1200)
T ss_pred             HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666   777888888888888888888888888877777777777777777788888888888888877666666666


Q ss_pred             hhHHHHHHHHHHHHH
Q 001234          512 ETDKLQLEKAKFEAE  526 (1118)
Q Consensus       512 Eae~Lk~eKekFE~E  526 (1118)
                      |.-.|+..-++.+-+
T Consensus       475 EE~~l~~~i~~~~~d  489 (1200)
T KOG0964|consen  475 EEKKLRSLIANLEED  489 (1200)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666676666655543

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.18  E-value=8.7  Score=52.06  Aligned_cols=344  Identities=18%  Similarity=0.180  Sum_probs=167.5

Q ss_pred             hhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhh-------hhhhhHHHHHHHHHhchHHHHHHH
Q 001234          169 KKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKIL  241 (1118)
Q Consensus       169 eKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~-------~E~ea~E~~~~~qRe~L~eweKkL  241 (1118)
                      +....+..=++..+.....++--...+..++.-+++.=+.|+.+-..|.       .|.+++....+.++..|...+-..
T Consensus       710 er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~  789 (1822)
T KOG4674|consen  710 ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQK  789 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455566777777788887888888899999998888888876655       445555555555555555555554


Q ss_pred             HHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHH----HhhhhHHHHHHHHH-
Q 001234          242 QQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV----SLLKREEAVIEREA-  316 (1118)
Q Consensus       242 qe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~----~l~~rEe~~~~~~~-  316 (1118)
                      ...++-...++.-+++          .+..++.+|..++++++....-++.-..+++.-+.    .+..-....+.+.. 
T Consensus       790 ~~~e~s~~~~k~~~e~----------~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~  859 (1822)
T KOG4674|consen  790 NELEESEMATKDKCES----------RIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTS  859 (1822)
T ss_pred             HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444442          23445555555555555555444443333333222    22222333333333 


Q ss_pred             ------HHHHhHHhHHHHHHHHhhhhhHHHHHHHHHh---HHHHhhhhhhHHHHHHHH---hhhHHHHHH---HHHHHHH
Q 001234          317 ------SLQKKEQKLLVSQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEIE---KKRRAWE  381 (1118)
Q Consensus       317 ------~Le~KEkELl~leEKL~aRE~~EIQKLldeh---~a~L~~Kk~EFElElE~k---rKs~eeEle---~K~~~~E  381 (1118)
                            .+.+.|..+..|..+|.   .+.++.+..+.   .....-+-..|..++++-   +..|-....   +=-....
T Consensus       860 l~~~~~~~~~le~k~~eL~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~  936 (1822)
T KOG4674|consen  860 LDSVSTNIAKLEIKLSELEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYS  936 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  33344444444444442   35666666665   233333334466665554   333322221   1112222


Q ss_pred             hhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHHH---hHHHHHHHHHHHHHH
Q 001234          382 LRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEKE---ADLKKSLLQKEKEEV  450 (1118)
Q Consensus       382 ~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~--------aeEK~---le~ek~~L~~eKEel  450 (1118)
                      .-|.-|..+...+.+--+.++.+.+.+..+--.|+.++..|+..=..|.        -.+++   +..+..-++.+...+
T Consensus       937 s~eqsl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~ 1016 (1822)
T KOG4674|consen  937 SLEQSLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSL 1016 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHH
Confidence            3333333343444443344444444444444444444333332211111        11221   122233334444444


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHH---HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001234          451 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELS---VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF  523 (1118)
Q Consensus       451 ~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER----~E~l---rLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF  523 (1118)
                      .....+..+....+...+..   ..+.+....+.-    ..|.   ..=.+|+++..+|-.+-..|-+.++-+...-..|
T Consensus      1017 ~~~~s~~~~~~~~~k~dl~~---~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~ 1093 (1822)
T KOG4674|consen 1017 LKAASQANEQIEDLQNDLKT---ETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQ 1093 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhc
Confidence            44444333333333333222   222222222211    1111   1224567777777777777888888777788888


Q ss_pred             HHHHh
Q 001234          524 EAEWE  528 (1118)
Q Consensus       524 E~EWE  528 (1118)
                      ++-|.
T Consensus      1094 ~~~w~ 1098 (1822)
T KOG4674|consen 1094 ERDWS 1098 (1822)
T ss_pred             ccchH
Confidence            88885

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.04  E-value=7.4  Score=50.03  Aligned_cols=274  Identities=18%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             hhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 001234          255 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS  334 (1118)
Q Consensus       255 LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~a  334 (1118)
                      ||+++..+......|...+++|...+..-..-                         ..+++.|+-+=.+|.-++..+..
T Consensus       679 l~~~~~~~~~~q~el~~le~eL~~le~~~~kf-------------------------~~l~~ql~l~~~~l~l~~~r~~~  733 (1174)
T KOG0933|consen  679 LKQAQKELRAIQKELEALERELKSLEAQSQKF-------------------------RDLKQQLELKLHELALLEKRLEQ  733 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHhc


Q ss_pred             hhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHH--HHHHHHHHHh-hhhhhhhhHHHHHhhhhhHHHhHHHHHHh
Q 001234          335 KESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDE--IEKKRRAWEL-RDLDLGQREESLLEREHDLEVQSRALVDK  411 (1118)
Q Consensus       335 RE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeE--le~K~~~~E~-rEvel~h~Eekl~kREqaLe~k~~~lkEK  411 (1118)
                      -+.--++.=+..+.-.+..=.++......-.+++.+.=  |+++..+|.. ||..++..+..+-.-.|.++..+..++..
T Consensus       734 ~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~  813 (1174)
T KOG0933|consen  734 NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKR  813 (1174)
T ss_pred             ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             hhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 001234          412 EKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL  491 (1118)
Q Consensus       412 Ekdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrL  491 (1118)
                      +.++..=.-...+-++.+...+..++.-..++..=+.++-.+.+.+-+.-.....-..+|...+.++...-.+-+.++..
T Consensus       814 ~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~  893 (1174)
T KOG0933|consen  814 ENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTS  893 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhH


Q ss_pred             HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHH------------------------HHHHHHHHH
Q 001234          492 EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELR------------------------KEAERVAVE  547 (1118)
Q Consensus       492 QseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~------------------------KEa~~I~eE  547 (1118)
                      +-+.-.|+-..-.-...|..|...++.++..-.++-+.|-.|-+=|.                        .+++.+.+-
T Consensus       894 ~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k  973 (1174)
T KOG0933|consen  894 QEKCLSEKSDGELERKKLEHEVTKLESEKANARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEK  973 (1174)
T ss_pred             HHHHHHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHH


Q ss_pred             HHHHHH
Q 001234          548 RVVVSK  553 (1118)
Q Consensus       548 re~lek  553 (1118)
                      ..++++
T Consensus       974 ~~~l~k  979 (1174)
T KOG0933|consen  974 KEKLEK  979 (1174)
T ss_pred             HHHHHh

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=95.97  E-value=0.31  Score=57.95  Aligned_cols=75  Identities=28%  Similarity=0.319  Sum_probs=44.5

Q ss_pred             hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 001234          355 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK  434 (1118)
Q Consensus       355 k~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK  434 (1118)
                      +.+++.|+...|..++.+++.+       +.++..+|..|.+|+..|+.+.+.|..+++.|+.+.+.|..+++.+....+
T Consensus        53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~  125 (514)
T TIGR03319        53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE  125 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345555555555555555444       444555566666666666666666666666666666666666666555555


Q ss_pred             Hh
Q 001234          435 EA  436 (1118)
Q Consensus       435 ~l  436 (1118)
                      ++
T Consensus       126 e~  127 (514)
T TIGR03319       126 EL  127 (514)
T ss_pred             HH
Confidence            44

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=95.94  E-value=8.8  Score=50.10  Aligned_cols=86  Identities=12%  Similarity=0.187  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH----hhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 001234          494 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW----EMID-EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDA  568 (1118)
Q Consensus       494 eLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW----E~LD-EKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~  568 (1118)
                      .+++....+..+...+..+...+++++..|..+-    -.+. +..+..+--...+..+-+.+..-+.......+.++..
T Consensus       675 ~~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~  754 (1201)
T PF12128_consen  675 AKEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKE  754 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555566666666666666666655432    2222 4444445555566666677777777777777777777


Q ss_pred             HHHHHHhhhhh
Q 001234          569 MRDQHKRDVDS  579 (1118)
Q Consensus       569 ~r~~~krelEs  579 (1118)
                      ++.+|..+|.+
T Consensus       755 le~~~~~eL~~  765 (1201)
T PF12128_consen  755 LEQQYNQELAG  765 (1201)
T ss_pred             HHHHHHHHHHh
Confidence            87777776644

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.80  E-value=2  Score=48.23  Aligned_cols=166  Identities=20%  Similarity=0.169  Sum_probs=116.1

Q ss_pred             HHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 001234          402 EVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAM  481 (1118)
Q Consensus       402 e~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lkit  481 (1118)
                      =+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+......  +.
T Consensus       127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~  204 (325)
T PF08317_consen  127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IE  204 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hh
Confidence            3444555556666666666666655555555555555555555555555555555555555555555544443333  22


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 001234          482 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDS  561 (1118)
Q Consensus       482 eeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~er  561 (1118)
                      .-+..++    ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=..|-.+
T Consensus       205 ~~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~  280 (325)
T PF08317_consen  205 SCDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKR  280 (325)
T ss_pred             hcCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            2334444    346677777777788888888999999999999999999999999999999999999899999999999


Q ss_pred             hHHHHHHHHHHH
Q 001234          562 LRQERDAMRDQH  573 (1118)
Q Consensus       562 LK~EK~~~r~~~  573 (1118)
                      ||..-+.++...
T Consensus       281 Lk~~~~~Le~~~  292 (325)
T PF08317_consen  281 LKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHHHHHH
Confidence            999988887654

>PRK00106 hypothetical protein; Provisional

Probab=95.74  E-value=0.78  Score=55.14  Aligned_cols=74  Identities=27%  Similarity=0.308  Sum_probs=38.3

Q ss_pred             hhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 001234          356 SEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE  435 (1118)
Q Consensus       356 ~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~  435 (1118)
                      .+++.|+...|..++.++...+..       +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....++
T Consensus        75 lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~  147 (535)
T PRK00106         75 LEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ  147 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555544443333       4444555555555555555555555555555555555555555444444


Q ss_pred             h
Q 001234          436 A  436 (1118)
Q Consensus       436 l  436 (1118)
                      +
T Consensus       148 ~  148 (535)
T PRK00106        148 V  148 (535)
T ss_pred             H
Confidence            4

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.41  E-value=0.0041  Score=77.02  Aligned_cols=244  Identities=22%  Similarity=0.258  Sum_probs=0.0

Q ss_pred             hcHHHHHHHHHHhhhhhcch--hhhhhccccchhheehhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhh
Q 001234           44 RDKAALIAYIAKLETECYIL--KIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESL  121 (1118)
Q Consensus        44 rD~~aLia~IskLE~E~~~~--~lydYQynMGLLLiEkKEwtSK~EeLkqa~~eae~~lKREqaAhl~ALsEaeKREEnL  121 (1118)
                      |.+..|.+...+|++|..-|  .|=+.....+-|--.+.-|.+..++++..+++-    .+.+.+-...+..++.-=+.|
T Consensus       201 r~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L  276 (859)
T PF01576_consen  201 RQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQL  276 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHH
Confidence            34455666677777772211  133333445555555666666666666655543    122222233455556666788


Q ss_pred             hhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHH
Q 001234          122 KKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQE  201 (1118)
Q Consensus       122 kKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~e  201 (1118)
                      +..|.-|-.+...|++.|.-+..+.+.+|--++.-...   .+..+++=---...+|..+...+-+++.+.+.+++.-+-
T Consensus       277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~---~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~r  353 (859)
T PF01576_consen  277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ---RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKR  353 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888999999999999999998888666553332   233333222223445666666666666666666665554


Q ss_pred             HhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhh
Q 001234          202 VVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRA  281 (1118)
Q Consensus       202 VEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kk  281 (1118)
                      +.+--.+++-+.-...+.+...++...+--..|.+|..++......+-..++-....+-.++..-..+....-.++.+. 
T Consensus       354 L~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~le-  432 (859)
T PF01576_consen  354 LQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELE-  432 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHH-
Confidence            4444444444444444555555554433446678888887777766666666666666666655555554444444333 


Q ss_pred             hHHHHHHHHhhhhhhhh
Q 001234          282 NVEEKFKALNEEKSNLD  298 (1118)
Q Consensus       282 kie~~~~~Lk~ke~dl~  298 (1118)
                         ..+..|..+-.++.
T Consensus       433 ---re~k~L~~El~dl~  446 (859)
T PF01576_consen  433 ---RENKQLQDELEDLT  446 (859)
T ss_dssp             -----------------
T ss_pred             ---HHHHHHHHhhccch
Confidence               23344444444443

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.32  E-value=14  Score=48.00  Aligned_cols=94  Identities=19%  Similarity=0.256  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHH
Q 001234          497 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQH  573 (1118)
Q Consensus       497 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre---~lek~~~~E~erLK~EK~~~r~~~  573 (1118)
                      -.|......-....+.+..++..-++|+++|..++-++++..+|.+.....|-   ++..-...|.+||+.+-...-   
T Consensus       303 ~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---  379 (1141)
T KOG0018|consen  303 KRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---  379 (1141)
T ss_pred             hHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---
Confidence            33444444455566778889999999999999999999999999999887554   455555667788877655433   


Q ss_pred             HhhhhhhhhhHHHHHHhhhh
Q 001234          574 KRDVDSLNREREEFMNKMVH  593 (1118)
Q Consensus       574 krelEsL~~ekEsF~~kMeh  593 (1118)
                      ..+|+.|++...+=-+...|
T Consensus       380 ~~el~~ln~~~r~~~~~ld~  399 (1141)
T KOG0018|consen  380 LEELEVLNRNMRSDQDTLDH  399 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            66666666655544444443

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.17  E-value=8.8  Score=44.94  Aligned_cols=90  Identities=20%  Similarity=0.304  Sum_probs=52.2

Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 001234          460 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRK  539 (1118)
Q Consensus       460 ~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~K  539 (1118)
                      .++.++.+...+......++....+..++..--.+|...|..+|.....+..+...|+.+..+.+..=..+.++-.++..
T Consensus       307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~  386 (562)
T PHA02562        307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD  386 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence            45555555555555555555555556665555566666666666666666666666666666666654444444444444


Q ss_pred             HHHHHHHHHH
Q 001234          540 EAERVAVERV  549 (1118)
Q Consensus       540 Ea~~I~eEre  549 (1118)
                      ++..+..++.
T Consensus       387 ~l~~~~~~~~  396 (562)
T PHA02562        387 ELDKIVKTKS  396 (562)
T ss_pred             HHHHHHHHHH
Confidence            4444443333

>PRK12704 phosphodiesterase; Provisional

Probab=95.16  E-value=0.28  Score=58.44  Aligned_cols=62  Identities=31%  Similarity=0.323  Sum_probs=30.5

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001234          364 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK  428 (1118)
Q Consensus       364 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks  428 (1118)
                      ..+..++.++...+.+++   .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.
T Consensus        57 e~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~  118 (520)
T PRK12704         57 EALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKE  118 (520)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344456655555554   34555566666666555554444444444444444444333333

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=94.93  E-value=0.35  Score=57.55  Aligned_cols=70  Identities=29%  Similarity=0.291  Sum_probs=36.8

Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001234          364 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA  436 (1118)
Q Consensus       364 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~l  436 (1118)
                      ..+..+++++..++.+++   .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|..-++++
T Consensus        51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL  120 (514)
T TIGR03319        51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL  120 (514)
T ss_pred             HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344556666665554   4455566666666666655555555555555554444444444444444433

>PRK00106 hypothetical protein; Provisional

Probab=94.91  E-value=1.2  Score=53.72  Aligned_cols=12  Identities=25%  Similarity=0.401  Sum_probs=9.4

Q ss_pred             ccchhhhhhccC
Q 001234          901 EDGIHAARKRRV  912 (1118)
Q Consensus       901 ~~~~~agrkrr~  912 (1118)
                      --++||||-=||
T Consensus       476 ~yaiqaGREiRv  487 (535)
T PRK00106        476 SFALQAGREIRI  487 (535)
T ss_pred             HHHHhcCCeEEE
Confidence            356899998886

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=94.73  E-value=14  Score=45.09  Aligned_cols=302  Identities=17%  Similarity=0.170  Sum_probs=167.1

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001234          144 AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK  223 (1118)
Q Consensus       144 ~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~  223 (1118)
                      .+...||+.++.=++.|.-+|+.+......++..+.....-+.++-.+.-.+                            
T Consensus        81 ~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~----------------------------  132 (546)
T KOG0977|consen   81 RETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA----------------------------  132 (546)
T ss_pred             CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------------------
Confidence            4778999999999999999999998888887777766555555443332222                            


Q ss_pred             HHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHH
Q 001234          224 EREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS  303 (1118)
Q Consensus       224 E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~  303 (1118)
                      ++...--|+++.+|...|-+.+.-++-.++.+..=++.....-+...++..+|..+++-++.+...-.+-...+..-+..
T Consensus       133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee  212 (546)
T KOG0977|consen  133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE  212 (546)
T ss_pred             HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            12223346778888888888888888888887777777777777888888888888888877754433332222222222


Q ss_pred             hhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 001234          304 LLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWE  381 (1118)
Q Consensus       304 l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~-~EIQKLl-deh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E  381 (1118)
                      |.-          ....=+.+|.+..-+ ..|+. ...+... ++-..++.-=+.+||.-+..-|+.++.=.+.|+.++.
T Consensus       213 l~f----------~~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~  281 (546)
T KOG0977|consen  213 LAF----------LKRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIR  281 (546)
T ss_pred             HHH----------HHhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            211          111222333332222 12221 1111110 0111222233445666666777777777777777665


Q ss_pred             hhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001234          382 LRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSL  461 (1118)
Q Consensus       382 ~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~  461 (1118)
                      ..=.--+          ..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..|+...+..=++.+...
T Consensus       282 ~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i  351 (546)
T KOG0977|consen  282 TSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEI  351 (546)
T ss_pred             hhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence            3110000          001111122222222222222233333445555566666666777776666655555544444


Q ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 001234          462 SSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA  504 (1118)
Q Consensus       462 a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~  504 (1118)
                      +.+-++..++.-          |...|+-.+.-|--||..||.
T Consensus       352 ~~mReec~~l~~----------Elq~LlD~ki~Ld~EI~~YRk  384 (546)
T KOG0977|consen  352 AKMREECQQLSV----------ELQKLLDTKISLDAEIAAYRK  384 (546)
T ss_pred             HHHHHHHHHHHH----------HHHHhhchHhHHHhHHHHHHH
Confidence            444444444443          444455555788889999985

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.64  E-value=25  Score=47.50  Aligned_cols=146  Identities=18%  Similarity=0.250  Sum_probs=76.7

Q ss_pred             HHhHHHHHHHHHhhhhhhhhhh-hhh-----h---------------hHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhc
Q 001234          132 IASLEKAVHEIRAESAETKVAA-DSK-----F---------------AEARCMVENAQKKFAEAEAKLHAAESLQAEANR  190 (1118)
Q Consensus       132 VadLEKAL~emr~E~AevK~ts-esK-----L---------------aEA~aLv~~~eeKslEvE~KL~aAea~~AEa~R  190 (1118)
                      |.+|+.+|++.|--.-.||++. +..     +               .+-+.|++.|    +-.-.|+..|..++..+..
T Consensus       232 i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~~r~~eERR~liEEA----ag~r~rk~eA~kkLe~tE~  307 (1486)
T PRK04863        232 FQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADYMRHANERRVHLEEA----LELRRELYTSRRQLAAEQY  307 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            4567777777766666666543 111     1               1223333333    2233566666666666666


Q ss_pred             chhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHh
Q 001234          191 YHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS  270 (1118)
Q Consensus       191 k~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~  270 (1118)
                      +...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++.+....+.+-.+.+.+....+.
T Consensus       308 nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEle  386 (1486)
T PRK04863        308 RLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAE  386 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677777777777777776665543322222 222223444444555555555555555555555555555555555


Q ss_pred             HhHHHHHHHhhh
Q 001234          271 RKEKELEASRAN  282 (1118)
Q Consensus       271 ~kEkeLEe~kkk  282 (1118)
                      ..+.++..++..
T Consensus       387 elEeeLeeLqeq  398 (1486)
T PRK04863        387 AAEEEVDELKSQ  398 (1486)
T ss_pred             HHHHHHHHHHHH
Confidence            555555544443

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.30  E-value=14  Score=43.30  Aligned_cols=99  Identities=26%  Similarity=0.269  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 001234          439 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL  518 (1118)
Q Consensus       439 ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~  518 (1118)
                      +...|.++...+.....+++.......+...++.+-...+....+.       -..+..++..++...+.|.....++..
T Consensus       307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~  379 (562)
T PHA02562        307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE  379 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence            3444444444444444444444443333333333333333333222       233666777777777777777888888


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 001234          519 EKAKFEAEWEMIDEKREELRKEAERV  544 (1118)
Q Consensus       519 eKekFE~EWE~LDEKRael~KEa~~I  544 (1118)
                      +....+.+|..+...++++.++....
T Consensus       380 ~l~~l~~~l~~~~~~~~~~~ke~~~~  405 (562)
T PHA02562        380 ELAKLQDELDKIVKTKSELVKEKYHR  405 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999988763

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=94.05  E-value=1.1  Score=47.15  Aligned_cols=70  Identities=33%  Similarity=0.395  Sum_probs=45.2

Q ss_pred             HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 001234          361 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI  430 (1118)
Q Consensus       361 ElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~  430 (1118)
                      ++...|..++.|+..++.++..+|..|..+|+.|..+...|+++...|..++.+|..+...|+.++..+.
T Consensus        61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~  130 (201)
T PF12072_consen   61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555777888888888888777777666666666666666666655555555555555555555544443

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=93.41  E-value=23  Score=42.66  Aligned_cols=147  Identities=22%  Similarity=0.267  Sum_probs=77.6

Q ss_pred             hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 001234          428 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKL  507 (1118)
Q Consensus       428 sL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke  507 (1118)
                      .|.+..++|+.-+..|.+-++++..|...++.++.+++..+..+..-+++.......-       .-|..++..+|..-.
T Consensus       282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v-------~~L~~eL~~~r~eLe  354 (522)
T PF05701_consen  282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEV-------SSLEAELNKTRSELE  354 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------hhHHHHHHHHHHHHH
Confidence            3667777777778888888888888888888888888777777777777665555433       334444444444443


Q ss_pred             HhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHH
Q 001234          508 ELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEF  587 (1118)
Q Consensus       508 ~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~~ekEsF  587 (1118)
                      ....+..+.+.       .|..|--.-.++..|++....+..    ....|-..++.+-..++..+.-=-..|......+
T Consensus       355 a~~~~e~~~k~-------~~~~l~~~Lqql~~Eae~Ak~ea~----~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~  423 (522)
T PF05701_consen  355 AAKAEEEKAKE-------AMSELPKALQQLSSEAEEAKKEAE----EAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEA  423 (522)
T ss_pred             HHHhhhcchhh-------hHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333222211       222222222333333332221111    1224555555555555555554444444444444


Q ss_pred             HHhhh
Q 001234          588 MNKMV  592 (1118)
Q Consensus       588 ~~kMe  592 (1118)
                      .+-..
T Consensus       424 eaaKa  428 (522)
T PF05701_consen  424 EAAKA  428 (522)
T ss_pred             HHHHH
Confidence            44333

Several sequences in this family are described as being myosin heavy chain-like.

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.62  E-value=38  Score=43.13  Aligned_cols=118  Identities=23%  Similarity=0.294  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 001234          444 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF  523 (1118)
Q Consensus       444 ~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekF  523 (1118)
                      .+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++        |.++.++-+.    .
T Consensus       316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE--------lekqLerQRe----i  383 (1118)
T KOG1029|consen  316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE--------LEKQLERQRE----I  383 (1118)
T ss_pred             hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH----H
Confidence            356788888899999999999999999999999999999998888888776665544        3333322111    0


Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh
Q 001234          524 EAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN  581 (1118)
Q Consensus       524 E~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~krelEsL~  581 (1118)
                      |      -.+-++-.|+.++-.--|+.+++...-|-+|.|.  ..|.+|..|+-|-+-
T Consensus       384 E------~qrEEerkkeie~rEaar~ElEkqRqlewErar~--qem~~Qk~reqe~iv  433 (1118)
T KOG1029|consen  384 E------RQREEERKKEIERREAAREELEKQRQLEWERARR--QEMLNQKNREQEWIV  433 (1118)
T ss_pred             H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence            1      1122223334444444556666666666665543  345555555554443

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.53  E-value=47  Score=43.92  Aligned_cols=136  Identities=18%  Similarity=0.218  Sum_probs=94.1

Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001234          451 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI  530 (1118)
Q Consensus       451 ~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L  530 (1118)
                      ..+..++.++..++..-..++.+++..+.+.++|=.-|+-.+..+..-.+.+-....-+++..++.+..--....+...+
T Consensus       475 ~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~  554 (1293)
T KOG0996|consen  475 EGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSL  554 (1293)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            34566777777888888889999999999999888888888888777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH--hhhhhhhhhHHH
Q 001234          531 DEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHK--RDVDSLNREREE  586 (1118)
Q Consensus       531 DEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~k--relEsL~~ekEs  586 (1118)
                      --+..++.+++.....+=..+...++.=+.++-.-+..|...-.  .=|.+|.+.+++
T Consensus       555 k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~r~kes  612 (1293)
T KOG0996|consen  555 KQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALMRLKES  612 (1293)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
Confidence            77777777777766665555555555444444433333332222  235666666664

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=92.50  E-value=17  Score=38.83  Aligned_cols=143  Identities=19%  Similarity=0.286  Sum_probs=92.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 001234          485 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ  564 (1118)
Q Consensus       485 R~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~  564 (1118)
                      |..-+.|-.-||++|...|.+....-+...++.++-.+.-.--..+.+.+++|++.+......+..|....         
T Consensus        22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k---------   92 (201)
T PF13851_consen   22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK---------   92 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence            44566777889999999999999999999999999999999999999999999998887665554443322         


Q ss_pred             HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 001234          565 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK  640 (1118)
Q Consensus       565 EK~~~r~~~krelEsL~~ekEsF~---~kMehErs~~~eKiq~Erad~l~d~EmqkreL-E~~iqkRqEEiE~~L~EREk  640 (1118)
                        ..+. ....++..|..+.+.+.   .+++.||.+|..+-..    +++|+. ||-.+ ..-++++...+...|..|+.
T Consensus        93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea  164 (201)
T PF13851_consen   93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA  164 (201)
T ss_pred             --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1111 23556666666666554   3444555555544442    233332 22222 33455566666666666665


Q ss_pred             HHHH
Q 001234          641 AFEE  644 (1118)
Q Consensus       641 ~FEe  644 (1118)
                      .+.+
T Consensus       165 qL~e  168 (201)
T PF13851_consen  165 QLNE  168 (201)
T ss_pred             HHHH
Confidence            5543

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=91.75  E-value=4.7  Score=42.56  Aligned_cols=59  Identities=25%  Similarity=0.383  Sum_probs=38.1

Q ss_pred             HHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 001234          379 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD  437 (1118)
Q Consensus       379 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le  437 (1118)
                      ++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...|...+..++
T Consensus        72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~  130 (201)
T PF12072_consen   72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE  130 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666677777777777777777777777666666666666666555555555553

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=91.25  E-value=32  Score=39.36  Aligned_cols=53  Identities=23%  Similarity=0.366  Sum_probs=35.3

Q ss_pred             hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHH
Q 001234          399 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN  451 (1118)
Q Consensus       399 qaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~  451 (1118)
                      ..|..++..+.++--++-.+.+.+.++=+++++....|-.+-.+|-..+.+++
T Consensus        30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein   82 (294)
T COG1340          30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEIN   82 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666666777777777777777777777777776666666666666555554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=90.66  E-value=30  Score=37.98  Aligned_cols=241  Identities=25%  Similarity=0.330  Sum_probs=125.8

Q ss_pred             HHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 001234          446 EKEEVNIIKSDL----QKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA  521 (1118)
Q Consensus       446 eKEel~~lK~dl----EK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKe  521 (1118)
                      +|++|..|++-+    ++.+ +++.+-..+......+....  ......+..-.-.+|..+|.+-..+..|...|..+..
T Consensus         2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~   78 (312)
T PF00038_consen    2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEID   78 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhh
Confidence            456666655543    3443 34444444444444444442  3444556677778888888888888888888888888


Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---HHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 001234          522 KFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD---AMRDQHKRDVDSLNREREEFMNKMVHEHSEW  598 (1118)
Q Consensus       522 kFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~---~~r~~~krelEsL~~ekEsF~~kMehErs~~  598 (1118)
                      +...+.+.+-.|-.........+.           ++-..|+...+   ..+......+.+|.-+-.-.....+.|-..+
T Consensus        79 ~l~~e~~~~r~k~e~e~~~~~~le-----------~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L  147 (312)
T PF00038_consen   79 NLKEELEDLRRKYEEELAERKDLE-----------EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL  147 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            887777776555444433322222           23333333332   2344455556666655543333444455666


Q ss_pred             HHHHHHHHHHhhhhhH-hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 001234          599 FTKIQQERADFLLGIE-MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE  677 (1118)
Q Consensus       599 ~eKiq~Erad~l~d~E-mqkreLE~~iqkRqEEiE~~L~EREk~FEeek~~EL~~IN~lkE~a~kE~Eev~lE~~rLekE  677 (1118)
                      -..++   ..+.-++. ....+|...|..-+.+.+.....--...+.--...+..|+.........+..++.|...+-..
T Consensus       148 ~~~~~---~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~  224 (312)
T PF00038_consen  148 REQIQ---SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQ  224 (312)
T ss_dssp             STT-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccc---cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhh
Confidence            66555   33333333 456677777777777777666555555555555666666666666666666666666665555


Q ss_pred             HHHhhhhhhhhhHHHHHHHhhHHHHH
Q 001234          678 RMEINMDRQRRDREWAELNNSIEELM  703 (1118)
Q Consensus       678 R~Ei~~~ke~le~e~aEm~kdIeeL~  703 (1118)
                      -+.+..+-..+...-+.+.+.|.+|.
T Consensus       225 ~~~l~~el~~l~~~~~~Le~~l~~le  250 (312)
T PF00038_consen  225 IQSLQAELESLRAKNASLERQLRELE  250 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHhhhhhhccccchhhhhhhHHHHH
Confidence            54444444444444444444444443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK12705 hypothetical protein; Provisional

Probab=90.04  E-value=17  Score=43.95  Aligned_cols=60  Identities=25%  Similarity=0.380  Sum_probs=33.7

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 001234          362 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK  428 (1118)
Q Consensus       362 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEks  428 (1118)
                      +...|..++.+++.++.++..+       |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus        61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~  120 (508)
T PRK12705         61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE  120 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555556666666555555       44566666666666666666666555555544444443

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=89.60  E-value=2.4  Score=52.14  Aligned_cols=67  Identities=30%  Similarity=0.263  Sum_probs=0.0

Q ss_pred             hHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHH
Q 001234          262 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQ  329 (1118)
Q Consensus       262 ~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~le  329 (1118)
                      +..-.....+...++..++... .....|+++...|..++..+-.-+.++..++.....-|.++..|.
T Consensus       259 i~~LE~en~~l~~Elk~Lr~~~-~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~  325 (722)
T PF05557_consen  259 IRELEKENRRLREELKHLRQSQ-ENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWE  325 (722)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444443333322 234566666777777776666666666665555555555555553

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=89.27  E-value=63  Score=39.68  Aligned_cols=25  Identities=4%  Similarity=0.041  Sum_probs=15.9

Q ss_pred             ccccCCCccccCCCCcHHHHHHHHHccCC
Q 001234            9 LAITPSSRVLQSPLSDESIWKRLKEAGLD   37 (1118)
Q Consensus         9 l~~~~g~rv~~~~~~d~~iWkr~~eaG~D   37 (1118)
                      +++-.|.    ++.|-..+-..++-+=|+
T Consensus        30 ~~~i~G~----Ng~GKttll~ai~~~LyG   54 (650)
T TIGR03185        30 IILIGGL----NGAGKTTLLDAIQLALYG   54 (650)
T ss_pred             EEEEECC----CCCCHHHHHHHHHHHhcC
Confidence            4444454    678888888777765333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=89.13  E-value=67  Score=39.81  Aligned_cols=216  Identities=18%  Similarity=0.195  Sum_probs=118.8

Q ss_pred             hHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhhhhhhhhHhHHHhhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 001234          259 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN  338 (1118)
Q Consensus       259 Ee~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~ke~dl~~rl~~l~~rEe~~~~~~~~Le~KEkELl~leEKL~aRE~~  338 (1118)
                      +....+..+.+..+++.|+++...|+.-...++.-...+..-...+...+.....++..+..+++=...|...=..-  .
T Consensus       320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~  397 (594)
T PF05667_consen  320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A  397 (594)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence            34445666667777777776666666665555555555555444444444444444444444443322221110000  2


Q ss_pred             HHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 001234          339 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER  418 (1118)
Q Consensus       339 EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~K  418 (1118)
                      .+|.+++.    -..|..++..+.+..|.-+.++++.=+...              ..++-+.-.+...++........-
T Consensus       398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~--------------~~~~~e~~~~~~~ik~~r~~~k~~  459 (594)
T PF05667_consen  398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKA--------------SNRESESKQKLQEIKELREEIKEI  459 (594)
T ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------------hhcchHHHHHHHHHHHHHHHHHHH
Confidence            22333322    233445555555556655555544332222              222222333344444444444444


Q ss_pred             hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 001234          419 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS  489 (1118)
Q Consensus       419 sk~LKEkEksL~aeEK~le~e---------k~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~l  489 (1118)
                      ...++.|+...+...+.++.-         ...++.=.-.|.+-|.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus       460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli  539 (594)
T PF05667_consen  460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI  539 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            444444444444444333321         23445556678888999999999999999999999999999998888887


Q ss_pred             HHHHH
Q 001234          490 VLEIK  494 (1118)
Q Consensus       490 rLQse  494 (1118)
                      -=.++
T Consensus       540 frdAK  544 (594)
T PF05667_consen  540 FRDAK  544 (594)
T ss_pred             HHHhh
Confidence            76666

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=87.74  E-value=1.1e+02  Score=40.78  Aligned_cols=28  Identities=25%  Similarity=0.207  Sum_probs=21.4

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 001234          691 EWAELNNSIEELMVQRQKLEEQRQLLHAD  719 (1118)
Q Consensus       691 e~aEm~kdIeeL~~ls~KLk~QRE~~~~E  719 (1118)
                      --.|++| +-+|..++.+|...|....++
T Consensus      1016 kE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1016 KEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence            3457788 899999999998887655544

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=87.60  E-value=1.2e+02  Score=40.71  Aligned_cols=204  Identities=20%  Similarity=0.243  Sum_probs=105.0

Q ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHh----HHHHHHHhhhHHHHHHHHhhhhhhhhHhHH
Q 001234          227 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTLV  302 (1118)
Q Consensus       227 ~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~k----EkeLEe~kkkie~~~~~Lk~ke~dl~~rl~  302 (1118)
                      |..--.+|..-+-+|....--+.-+.. |-++-+++.+....++..    ..-|+++.......-.+++.-..+|...-.
T Consensus      1520 I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~ 1598 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQ 1598 (1758)
T ss_pred             HHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            444445555555555554444443332 334444555444443332    334666666666666666666666665555


Q ss_pred             HhhhhHHHHHHHH-------HHHHHhHHhHHHHHHHH--hhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 001234          303 SLLKREEAVIERE-------ASLQKKEQKLLVSQETL--ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI  373 (1118)
Q Consensus       303 ~l~~rEe~~~~~~-------~~Le~KEkELl~leEKL--~aRE~~EIQKLldeh~a~L~~Kk~EFElElE~krKs~eeEl  373 (1118)
                      .|+.-.+++...+       ..|...|.-+..|.-|.  ++++-..|+++.+--...--.-++.|+ .|....+.++.=+
T Consensus      1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLL 1677 (1758)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            5555444443333       44444454444444443  356677888888765554444556666 7777666666666


Q ss_pred             HHHHHHHHhhhhhhhhhHHHHHhh----hhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 001234          374 EKKRRAWELRDLDLGQREESLLER----EHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA  436 (1118)
Q Consensus       374 e~K~~~~E~rEvel~h~Eekl~kR----EqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~l  436 (1118)
                      +.|.....    .-..+=++|..+    -.+-+.++..|++.|-.+..+..+|.-+...|--.++++
T Consensus      1678 ~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1678 EKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred             HHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence            55543221    111112222222    123345566666666666665555555555555555544

>smart00787 Spc7 Spc7 kinetochore protein

Probab=85.90  E-value=71  Score=36.58  Aligned_cols=167  Identities=23%  Similarity=0.203  Sum_probs=112.6

Q ss_pred             HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 001234          401 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA  480 (1118)
Q Consensus       401 Le~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lki  480 (1118)
                      |-+...++..|.-=++=|++-++.-...|...-..+......|.++-+-+..+..++....+.+..+..++.+....+..
T Consensus       121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~  200 (312)
T smart00787      121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED  200 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence            34455566666666777777766666655555555555555555555555555555555555555555444444333322


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 001234          481 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD  560 (1118)
Q Consensus       481 teeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~e  560 (1118)
                      -  +..++..+..+|++    .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus       201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~  274 (312)
T smart00787      201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE  274 (312)
T ss_pred             C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            1  24566555555444    34445556667888999999999999999999999999998888888888889899999


Q ss_pred             hhHHHHHHHHHHH
Q 001234          561 SLRQERDAMRDQH  573 (1118)
Q Consensus       561 rLK~EK~~~r~~~  573 (1118)
                      +|+..-..++...
T Consensus       275 ~Lk~~~~~Le~l~  287 (312)
T smart00787      275 KLKEQLKLLQSLT  287 (312)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999888887654

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=85.67  E-value=0.24  Score=60.38  Aligned_cols=32  Identities=22%  Similarity=0.194  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001234          496 KEELDVVRAQKLELMVETDKLQLEKAKFEAEW  527 (1118)
Q Consensus       496 KeEId~~R~Qke~LlkEae~Lk~eKekFE~EW  527 (1118)
                      +..+..+=.|+..+.+|.|-|+++-..|+.|=
T Consensus       398 ~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~  429 (722)
T PF05557_consen  398 KKLIRRLERQKALATKERDYLRAQLKSYDKEE  429 (722)
T ss_dssp             --------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            33344444567778889999999999998874

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=85.10  E-value=72  Score=36.17  Aligned_cols=33  Identities=24%  Similarity=0.235  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhh
Q 001234          498 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI  530 (1118)
Q Consensus       498 EId~~R~Qke~LlkEae~Lk~eKekFE~EWE~L  530 (1118)
                      +|+.++.+...+....+.+..++..+..+=..+
T Consensus       231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~  263 (325)
T PF08317_consen  231 ELAELQEELEELEEKIEELEEQKQELLAEIAEA  263 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333344444444444444444333333

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=83.27  E-value=1.7e+02  Score=38.78  Aligned_cols=134  Identities=20%  Similarity=0.272  Sum_probs=88.6

Q ss_pred             HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001234          133 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR  212 (1118)
Q Consensus       133 adLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRe  212 (1118)
                      .+.++.|.....++-.    ..-|++.+..=+.....|.-++..|+-.-+|+.+++......-+..+...-+.-++++|+
T Consensus       277 ~~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re  352 (1074)
T KOG0250|consen  277 NEVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRRE  352 (1074)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            3344444444444432    233455566666666666666666777777777777778888888888888888889998


Q ss_pred             HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHH-HHHhhhhhhhhHhhHhhHHHHh
Q 001234          213 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERL-LDAQTLLNEREDHILSKLQELS  270 (1118)
Q Consensus       213 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL-~e~q~~LNqREe~~~e~~~~l~  270 (1118)
                      -.-+..+..-.+..|.+-+......+|.+-..+.++ -.++..+-++++.++-..+.+.
T Consensus       353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~eve  411 (1074)
T KOG0250|consen  353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVE  411 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            888888877777777777777777777777777666 4455445555555444443333

>PRK09039 hypothetical protein; Validated

Probab=82.95  E-value=79  Score=36.42  Aligned_cols=114  Identities=16%  Similarity=0.205  Sum_probs=72.9

Q ss_pred             hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001234          121 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ  200 (1118)
Q Consensus       121 LkKALgvEKqCVadLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~  200 (1118)
                      |=-.|+.+...-++|+-.|.+|+..+..    +...-+.+....++...-..+++..+....+.+++.--.++++.+...
T Consensus        65 L~e~L~le~~~~~~l~~~l~~l~~~l~~----a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~  140 (343)
T PRK09039         65 LADLLSLERQGNQDLQDSVANLRASLSA----AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE  140 (343)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            7778999999999999999999998872    233333333333322222335666666666666666666677777777


Q ss_pred             HHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHH
Q 001234          201 EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRK  238 (1118)
Q Consensus       201 eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~ewe  238 (1118)
                      -+-+.=.+||.++.++.++..+.+......+..+.+.+
T Consensus       141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~  178 (343)
T PRK09039        141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLG  178 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777766666666666665544433333333

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=82.29  E-value=63  Score=33.09  Aligned_cols=90  Identities=19%  Similarity=0.289  Sum_probs=66.5

Q ss_pred             HHhcchhHHhhhhHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhH
Q 001234          187 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL  266 (1118)
Q Consensus       187 Ea~Rk~s~aerKL~eVEaRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~  266 (1118)
                      .|.-+...++-++++++.+-..+-.++.||..=..-.|.++..-...|.+-...|.++..+.....           ...
T Consensus        11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~   79 (143)
T PF12718_consen   11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN   79 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence            344455667777888888888888888888888888888888888888888888888887776554           334


Q ss_pred             HHHhHhHHHHHHHhhhHHHHH
Q 001234          267 QELSRKEKELEASRANVEEKF  287 (1118)
Q Consensus       267 ~~l~~kEkeLEe~kkkie~~~  287 (1118)
                      +-+..+|.+|+.+.+++..+.
T Consensus        80 rriq~LEeele~ae~~L~e~~  100 (143)
T PF12718_consen   80 RRIQLLEEELEEAEKKLKETT  100 (143)
T ss_pred             hhHHHHHHHHHHHHHHHHHHH
Confidence            456667777777666665443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=81.45  E-value=1.2e+02  Score=37.64  Aligned_cols=72  Identities=11%  Similarity=0.041  Sum_probs=38.3

Q ss_pred             hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHh--------hhhHHHhhhhhHHHHHHhHhhhhhhhH
Q 001234          152 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAE--------RKLQEVVAREDDLSRRIASFKADCEEK  223 (1118)
Q Consensus       152 tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~ae--------rKL~eVEaRE~~LrRerlSf~~E~ea~  223 (1118)
                      ..+.|...+..-..-+.+...++..+|.+|++.++.--+++....        .+|.++..+-...+-++....+-....
T Consensus       184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l  263 (754)
T TIGR01005       184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSV  263 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555556666666777777777777777666655443322        344444444444444444444333333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=80.95  E-value=2.2e+02  Score=38.42  Aligned_cols=38  Identities=16%  Similarity=0.146  Sum_probs=27.0

Q ss_pred             CCCCCccccccccCCCCCCCcccceeeeeeeeeeeceee
Q 001234          969 SNVPEGLHTLTSNNHTQGGNEEASILIVDKIIKISEVTC 1007 (1118)
Q Consensus       969 ~~~~~~~~~~~s~nqtqg~~ee~~~~~~d~ii~isevtc 1007 (1118)
                      -.|+++-+...+..+-.++ .-.=+|-|++.|||-.||-
T Consensus      1127 V~~s~~~~l~~~~~~~k~~-~~~~il~i~k~~~v~~vt~ 1164 (1317)
T KOG0612|consen 1127 VIVSSKKILFYVSEQDKEQ-SGPLILDIKKLFHVRQVTQ 1164 (1317)
T ss_pred             EeecccceEeeeccccccc-cchhhhhhhhceeEEeecc
Confidence            3566777777777777773 2234667889999999974

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=80.95  E-value=1.7e+02  Score=37.15  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=29.8

Q ss_pred             HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHH-HHhhhhHHHHhhhhH
Q 001234          362 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE  423 (1118)
Q Consensus       362 lE~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-kEKEkdl~~Ksk~LK  423 (1118)
                      +-++++.+|.|++.-++++-.+|-.+..+|..+        ..++.. +|-++|.+.-+.+|-
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~  597 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS  597 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence            444555566666666666666666666666555        222333 445556665555553

; GO: 0016021 integral to membrane

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=80.64  E-value=2.3e+02  Score=38.42  Aligned_cols=121  Identities=23%  Similarity=0.224  Sum_probs=77.5

Q ss_pred             hhhhccccchhheehhhhhhhHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHH
Q 001234           65 IFEHQHHMGLLILEKKELASKYEQIKASA--EAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEI  142 (1118)
Q Consensus        65 lydYQynMGLLLiEkKEwtSK~EeLkqa~--~eae~~lKREqaAhl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~em  142 (1118)
                      --|=-|.+|.|-   .-|+ |+.   +.+  ..|.....      .--|++.+.|=.-|.-.+..=..=++.|+..+..+
T Consensus       709 ~~dG~~r~G~l~---G~~~-k~~---a~~IG~~aR~~~R------~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L  775 (1353)
T TIGR02680       709 DVDGRFRLGVLR---GAWA-KPA---AEYIGAAARERAR------LRRIAELDARLAAVDDELAELARELRALGARQRAL  775 (1353)
T ss_pred             CCCCceeeeeee---cccC-Ccc---hhHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345567888875   7788 654   222  22222222      23455666666667777777677777888888888


Q ss_pred             HhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhH
Q 001234          143 RAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ  200 (1118)
Q Consensus       143 r~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~  200 (1118)
                      ..+.+.  |.++.-|..|+..+..+......+..++..|+..++.+-+....+.+.+.
T Consensus       776 ~~e~~~--~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l~  831 (1353)
T TIGR02680       776 ADELAG--APSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARRELE  831 (1353)
T ss_pred             HHHHHh--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888777  77778888888888777666666666666666555555554444444433

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF13863 DUF4200: Domain of unknown function (DUF4200)

Probab=80.21  E-value=44  Score=32.20  Aligned_cols=89  Identities=26%  Similarity=0.292  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 001234          369 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE  448 (1118)
Q Consensus       369 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~~eKE  448 (1118)
                      +...|..|+.+...++..+..++..|.++++.|....-.+..-=++-+.          ...-..+..+.+......--.
T Consensus        12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~----------k~~rA~k~a~~e~k~~~~k~~   81 (126)
T PF13863_consen   12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA----------KRERAEKRAEEEKKKKEEKEA   81 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence            5567788888888888888888888888888888777666544333333          333334444444444444445


Q ss_pred             HHHHHHHHHHHhhhhhHHH
Q 001234          449 EVNIIKSDLQKSLSSLDEK  467 (1118)
Q Consensus       449 el~~lK~dlEK~~a~~e~q  467 (1118)
                      +|..+..+|..+.+.+..-
T Consensus        82 ei~~l~~~l~~l~~~~~k~  100 (126)
T PF13863_consen   82 EIKKLKAELEELKSEISKL  100 (126)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            5666666666655554433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=80.17  E-value=2.5e+02  Score=38.64  Aligned_cols=98  Identities=19%  Similarity=0.303  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhh-hhhHH-HHHHHHHhhhhHH---HHHhhhhhhH---HH---HHHhcchhHHhhhhHHHh
Q 001234          135 LEKAVHEIRAESAETKVAADS-KFAEA-RCMVENAQKKFAE---AEAKLHAAES---LQ---AEANRYHRSAERKLQEVV  203 (1118)
Q Consensus       135 LEKAL~emr~E~AevK~tses-KLaEA-~aLv~~~eeKslE---vE~KL~aAea---~~---AEa~Rk~s~aerKL~eVE  203 (1118)
                      +-+|+..|++-..+.+.|-+. |.... ..|...+=..+.-   ++= |..|.-   .+   +-.-.+..++.++|..++
T Consensus       228 v~~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~~~~~aad~-~r~~eERR~liEEAag~r~rk~eA~kkLe~tE  306 (1486)
T PRK04863        228 VRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTNYVAADY-MRHANERRVHLEEALELRRELYTSRRQLAAEQ  306 (1486)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhhhhhhHHHH-hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788888888888776543 22221 1122111111111   000 111100   00   222244566667777777


Q ss_pred             hhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHH
Q 001234          204 AREDDLSRRIASFKADCEEKEREIIRERQSLSDR  237 (1118)
Q Consensus       204 aRE~~LrRerlSf~~E~ea~E~~~~~qRe~L~ew  237 (1118)
                      .+-..+....    .|.+.....+.++.+....|
T Consensus       307 ~nL~rI~diL----~ELe~rL~kLEkQaEkA~ky  336 (1486)
T PRK04863        307 YRLVEMAREL----AELNEAESDLEQDYQAASDH  336 (1486)
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            6666665544    34444444555555555555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	1118
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	4e-07
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	6e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	8e-05
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	2e-04
1sjj_A	863	Actinin; 3-helix bundle, calponin homology domain,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 92.6 bits (229), Expect = 4e-19
 Identities = 106/644 (16%), Positives = 214/644 (33%), Gaps = 164/644 (25%)

Query: 189 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDR--KKILQQEHE 246
           + +H   E    +   + D LS    +F  + + K+ + +  +  LS      I+  +  
Sbjct: 3   HHHHMDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDM-PKSILSKEEIDHIIMSKDA 60

Query: 247 -----RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALN-----EEKSN 296
                RL    TLL+++E+ +   ++E+ R   +   S    E++  ++      E++  
Sbjct: 61  VSGTLRLFW--TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 297 LDLTLVSLLK----REEAVIEREASLQ--KKEQKLLV------SQETLASK--ESNEIQK 342
           L        K    R +  ++   +L   +  + +L+       +  +A     S ++Q 
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178

Query: 343 IIANH------------ESALRVKQ-----------SEFEAELAIKYKLAEDEIEKKRRA 379
            +               E+ L + Q           S  +    IK ++      + RR 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRL 237

Query: 380 WELRDLDLGQREESLL------EREH--DLEVQSRALV---DK------------EKDLV 416
            + +       E  LL        +      +  + L+    K               L 
Sbjct: 238 LKSKPY-----ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 417 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN-----IIKSDLQKSLSSLDEKKKQV 471
             S  L   E K +   K  D +   L +E    N     II   ++  L++ D  K  V
Sbjct: 293 HHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HV 350

Query: 472 NCAKDKL-EAMKSEAGELSVLEIK-LKEEL-----DV-VRAQKLELMVETDKLQLEKAKF 523
           NC  DKL   ++S    L   E + + + L        +    L L+             
Sbjct: 351 NC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI------------- 395

Query: 524 EAEW-EMIDEKREELRKEAERVAVERVVVSKSL--KDERDS----------LRQERDAMR 570
              W ++I         +   V  +  +   SL  K  ++S          L+ + +   
Sbjct: 396 ---WFDVIKS-------DVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 571 DQHKRDVDSLNREREEFMNKMVHEHSE--WFTKIQQERADFLLGIEMQKRDLENCIEKRR 628
             H+  VD  N  +    + ++  + +  +++ I       L  IE  +R          
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIEHPERMTL------F 493

Query: 629 EELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRR 688
             +   FR     F E+K+R      S    A   +      +++L   +  I  +  + 
Sbjct: 494 RMVFLDFR-----FLEQKIRH----DSTAWNASGSILNT---LQQLKFYKPYICDNDPKY 541

Query: 689 DREWAELNN---SIEELMVQRQKLEEQRQLLHADREEIQAESER 729
           +R    + +    IEE ++  +  +  R  L A+ E I  E+ +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 5e-09
 Identities = 92/629 (14%), Positives = 185/629 (29%), Gaps = 173/629 (27%)

Query: 572  QHKRDVDSLNREREEFMNKMVHEHSEWFTKIQ--QERADFLLGIEMQKRDLENCIEKRRE 629
             H   +D    E +     ++    + F      ++  D    I + K ++++ I  +  
Sbjct: 2    HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDA 60

Query: 630  E---------LESSFREREKAFEEEKMR---EFQQISSLKEKAEKELEQVTLEIKRLDLE 677
                      L S   E  + F EE +R   +F     L    + E  Q ++  +    +
Sbjct: 61   VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF-----LMSPIKTEQRQPSMMTRMYIEQ 115

Query: 678  RMEINMDRQRRD-REWAELNNSIEELMVQ-RQKLEEQRQ----LLH-------------- 717
            R     DR   D + +A+ N S  +  ++ RQ L E R     L+               
Sbjct: 116  R-----DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170

Query: 718  ADREEIQA----------------ESERLKKLEDL--KIAVDYMAVSE-MQRSRLEHSQK 758
                ++Q                     L+ L+ L  +I  ++ + S+     +L     
Sbjct: 171  CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 759  KISAKRHLNQQTSLAHADLGSDQKFDVTNNG--DRFNTPSVQ-KTASASPPSLARFSWIK 815
            + +  R L +     +  L      +V N    + FN   +  K        L       
Sbjct: 231  Q-AELRRLLKSKPYENCLLVLL---NVQNAKAWNAFN---LSCKI-------LL----TT 272

Query: 816  RFADLVFKHSGENSVENDEEKSPTSDHEDASLT-----------INSRKRQ-PVRYSFGE 863
            RF  +       + +        + DH   +LT           ++ R +  P       
Sbjct: 273  RFKQVT------DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 864  PKVI-------------------LEVPSENEVVKRTVD-LESENNQNAAQKCKQSVSEDG 903
            P+ +                   +       +++ +++ LE    +    +   SV    
Sbjct: 327  PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL--SVFPPS 384

Query: 904  IHAARK--------------RRVDVDCVDPSELLMQNNKRRK-----QQEDFPRNSSEEA 944
             H                    V       S L+ +  K           +       E 
Sbjct: 385  AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 945  INHGAVAEQSNLPE--DQHTLTSKNKSN-----VPEGLHTLTSNNHTQGGNEEASILIVD 997
              H ++ +  N+P+  D   L            +  G H L +  H +       ++ +D
Sbjct: 444  ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI--GHH-LKNIEHPE-RMTLFRMVFLD 499

Query: 998  ------KIIKISEVTCEMTDADNFINQEKI--------DGSQNSVAESVQDIVKVGGTND 1043
                  KI   S          N + Q K         D     +  ++ D +     N 
Sbjct: 500  FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559

Query: 1044 HSTPAHTDDVVLPYISEIDGMVQE--KQM 1070
              +  +TD + +  ++E + + +E  KQ+
Sbjct: 560  ICSK-YTDLLRIALMAEDEAIFEEAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 2e-07
 Identities = 65/420 (15%), Positives = 127/420 (30%), Gaps = 122/420 (29%)

Query: 18  LQSPLSDESIWKRLKEA--GLDEVSIKR---------------RDKAALIAYIAKLETEC 60
           +Q+ L      K  +     L  V   +               R K       A   T  
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH- 288

Query: 61  YILKIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARK---- 116
               I    H M L   E K L  KY   +      E+L  + R   LS IAE+ +    
Sbjct: 289 ----ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LSIIAESIRDGLA 342

Query: 117 -----REESLKKTLGVEKECIASLEKAVHEIRA---------ESA--ETKVAA----DSK 156
                +  +  K   + +  +  LE A  E R           SA   T + +    D  
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPA--EYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400

Query: 157 FAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASF 216
            ++   +V    K             SL           E++ +E       +   +   
Sbjct: 401 KSDVMVVVNKLHKY------------SL----------VEKQPKESTISIPSIYLEL--- 435

Query: 217 KADCEEKEREIIRERQSLSDRKKILQQ-EHERLLDAQTLLNERED-----HI---LSKLQ 267
                   +  +    +L   + I+      +  D+  L+    D     HI   L  + 
Sbjct: 436 --------KVKLENEYAL--HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI- 484

Query: 268 ELSRKEKELEASRAN---VEEKFK----ALNEEKSNLDLTLVSLLKREEAVIEREASLQK 320
           E   +         +   +E+K +    A N   S L+ TL  L   +  + + +   ++
Sbjct: 485 EHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPYICDNDPKYER 543

Query: 321 KEQKLL-----VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 375
               +L     + +  + SK ++ ++  +   + A+              ++ A  ++++
Sbjct: 544 LVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAI--------------FEEAHKQVQR 589

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 83.7 bits (207), Expect = 2e-16
 Identities = 58/352 (16%), Positives = 137/352 (38%), Gaps = 19/352 (5%)

Query: 301  LVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEA 360
            L+ + ++EE +  ++  LQ+ +++   ++  L      E+++          + Q + +A
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELK-----ELEQKHTQLCEEKNLLQEKLQA 903

Query: 361  ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 420
            E  +       E E+ R     +  +L +    +  R  + E +S+ L  ++K + ++  
Sbjct: 904  ETELY-----AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ-- 956

Query: 421  LLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 480
             + + E +L    +E +  +  LQ EK   +     ++  +  ++++  ++   +  LE 
Sbjct: 957  -MLDLEEQL----EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011

Query: 481  MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKE 540
              S+       E +  + L  ++ +   ++ E +    ++ K   E E I  K E    +
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071

Query: 541  AERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFT 600
                  E       LK +     +E  A   + + +    N   ++ + ++    S+   
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK-IRELESHISDLQE 1130

Query: 601  KIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 652
             ++ E+A      E QKRDL   +E  + ELE +        E         
Sbjct: 1131 DLESEKAA-RNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 79.1 bits (195), Expect = 6e-15
 Identities = 72/412 (17%), Positives = 157/412 (38%), Gaps = 54/412 (13%)

Query: 167  AQKKFAEAEAKLHAAESLQAEANRYHRSAERK----------LQEVVAREDDLSRRIASF 216
            A+K FA+ + +L +   +Q     +                 L +V  +E+++  +    
Sbjct: 807  ARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEEL 866

Query: 217  KADCEEKER------EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELS 270
            +   E +++      E+ ++   L + K +LQ++ +   +      E    + +K QEL 
Sbjct: 867  QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926

Query: 271  RKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR----EEAVIEREASLQKKEQKLL 326
                E+EA     EE+ + L  EK  +   ++ L ++    E A  + +      + K+ 
Sbjct: 927  EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986

Query: 327  VSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLD 386
              ++ +   E ++  K+       L  + S+    LA + + A+  + K +   E    +
Sbjct: 987  KMEDDILIME-DQNNKLTK-ERKLLEERVSDLTTNLAEEEEKAK-NLTKLKNKHESMISE 1043

Query: 387  LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKE 446
            L  R +   +   +LE   R L  +  DL E+   L+ +  +L          K+ L K+
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAEL----------KAQLAKK 1093

Query: 447  KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQK 506
            +EE+    + L+   S  +   K++   +  +                L+E+L+  +A +
Sbjct: 1094 EEELQAALARLEDETSQKNNALKKIRELESHIS--------------DLQEDLESEKAAR 1139

Query: 507  LELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDE 558
                   +K + +K     E E +  + E+           R    K   D+
Sbjct: 1140 -------NKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 77.6 bits (191), Expect = 2e-14
 Identities = 62/361 (17%), Positives = 141/361 (39%), Gaps = 41/361 (11%)

Query: 411  KEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQ 470
            +E+++  +   L+  + +    E E    +    +  EE N+++  LQ       E ++ 
Sbjct: 855  QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEM 914

Query: 471  VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMI 530
                  K + ++    E+   E +++EE +            + +LQ EK K + +   +
Sbjct: 915  RVRLAAKKQELEEILHEM---EARIEEEEE-----------RSQQLQAEKKKMQQQMLDL 960

Query: 531  DEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNK 590
            +E+ EE     +++ +E+V     +K   D +    D          + L +ER+     
Sbjct: 961  EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED--------QNNKLTKERKL---- 1008

Query: 591  MVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREF 650
                         +ER   L     ++ +    + K + + ES   E E   ++E+ +  
Sbjct: 1009 ------------LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE-KSR 1055

Query: 651  QQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 710
            Q++  +K K E E   +  +I  L  +  E+     +++ E       +E+   Q+    
Sbjct: 1056 QELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNAL 1115

Query: 711  EQRQLLHADREEIQA--ESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQ 768
            ++ + L +   ++Q   ESE+  + +  K   D     E  ++ LE +    + ++ L  
Sbjct: 1116 KKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRG 1175

Query: 769  Q 769
             
Sbjct: 1176 S 1176

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 75.6 bits (186), Expect = 6e-14
 Identities = 60/372 (16%), Positives = 149/372 (40%), Gaps = 38/372 (10%)

Query: 352  RVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDK 411
             +K +  E E+  K +  +   E++++A      +L Q+   L E ++ L+ + +A  + 
Sbjct: 849  LLKVTRQEEEMQAKDEELQRTKERQQKAEAELK-ELEQKHTQLCEEKNLLQEKLQAETEL 907

Query: 412  EKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 471
              +  E    L  K+ +L     E + +    ++  +++   K  +Q+ +  L   ++Q+
Sbjct: 908  YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDL---EEQL 964

Query: 472  NCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 531
               +   + ++ E         K+++++ ++  Q  +L  E   L+   +         +
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 532  EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKM 591
            EK + L K   +           + +    L++E      + +++++ + R+ E   + +
Sbjct: 1025 EKAKNLTKLKNKH-------ESMISELEVRLKKEE-----KSRQELEKIKRKLEGESSDL 1072

Query: 592  VHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQ 651
              + +E   +I + +A      ++ K++ E      R E E+S +        +K+RE +
Sbjct: 1073 HEQIAELQAQIAELKA------QLAKKEEELQAALARLEDETSQKNNA----LKKIRELE 1122

Query: 652  -QISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLE 710
              IS L+E  E E              R +    ++    E   L   +E+ +      +
Sbjct: 1123 SHISDLQEDLESE-----------KAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171

Query: 711  EQRQLLHADREE 722
            E R   + D ++
Sbjct: 1172 ELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 74.5 bits (183), Expect = 1e-13
 Identities = 67/360 (18%), Positives = 137/360 (38%), Gaps = 13/360 (3%)

Query: 68   HQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGV 127
            H   M L       L    ++ +  A+  EL +  +R           K  E     L  
Sbjct: 836  HWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKER---QQKAEAELKELEQKHTQLCE 892

Query: 128  EKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAE 187
            EK  +    +A  E+ AE+ E +V   +K  E   ++   + +  E E +    ++ + +
Sbjct: 893  EKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952

Query: 188  ANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHER 247
              +     E +L+E  A    L     +     ++ E +I+      +   K  +   ER
Sbjct: 953  MQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012

Query: 248  LLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKR 307
            + D  T L E E+    K + L++ + + E+  + +E + K   + +  L+     L   
Sbjct: 1013 VSDLTTNLAEEEE----KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068

Query: 308  EEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIA--NHESALRVKQSEFEAELAIK 365
               + E+ A LQ +  +L   +  LA KE  E+Q  +A    E++ +    +   EL   
Sbjct: 1069 SSDLHEQIAELQAQIAEL---KAQLAKKEE-ELQAALARLEDETSQKNNALKKIRELESH 1124

Query: 366  YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEK 425
                ++++E ++ A    +       E L   + +LE        +++         ++K
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.8 bits (150), Expect = 1e-09
 Identities = 57/298 (19%), Positives = 118/298 (39%), Gaps = 35/298 (11%)

Query: 493  IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 552
             + KE      A+  EL  +  +L  EK   + + +   E   E  +   R+A ++  + 
Sbjct: 867  QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926

Query: 553  KSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLG 612
            + L +    + +E +             +++ +    KM  +  +   ++++E A     
Sbjct: 927  EILHEMEARIEEEEER------------SQQLQAEKKKMQQQMLDLEEQLEEEEAA-RQK 973

Query: 613  IEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKE---KAEKELEQVTL 669
            ++++K   +  I+K  +++     +  K  +E K         L+E        L +   
Sbjct: 974  LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK--------LLEERVSDLTTNLAEEEE 1025

Query: 670  EIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESER 729
            + K L   + +        +    +   S +EL   ++KLE +   LH    E+QA+   
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 730  L-----KKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQK 782
            L     KK E+L+ A+  +   E + S+  ++ KKI   R L    S    DL S++ 
Sbjct: 1086 LKAQLAKKEEELQAALARL---EDETSQKNNALKKI---RELESHISDLQEDLESEKA 1137

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 61.4 bits (149), Expect = 2e-09
 Identities = 33/262 (12%), Positives = 108/262 (41%), Gaps = 16/262 (6%)

Query: 503  RAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 562
                +  +++  + + E    + E +   E++++   E + +  +   + +     ++ L
Sbjct: 842  LFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901

Query: 563  RQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLEN 622
            + E +   +  +  V    +++E  + +++HE      + ++        ++ +K+ ++ 
Sbjct: 902  QAETELYAEAEEMRVRLAAKKQE--LEEILHEMEARIEEEEERSQQ----LQAEKKKMQQ 955

Query: 623  CI---EKRREELESSFR--EREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 677
             +   E++ EE E++ +  + EK   + K+++ +    + E    +L +   E K L+  
Sbjct: 956  QMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK---ERKLLEER 1012

Query: 678  RMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 737
              ++  +    + +   L     +      +LE + +     R+E++    +L+   +  
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE--GESS 1070

Query: 738  IAVDYMAVSEMQRSRLEHSQKK 759
               + +A  + Q + L+    K
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAK 1092

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 74.4 bits (183), Expect = 1e-13
 Identities = 44/300 (14%), Positives = 107/300 (35%), Gaps = 24/300 (8%)

Query: 82   LASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHE 141
             A  Y        AA ++QK  R          RKR + ++      +  +         
Sbjct: 805  QARCYATFLRRTRAAIIIQKFQRM------YVVRKRYQCMRDATIALQALLRGYLV---- 854

Query: 142  IRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQE 201
             R +         S   +       A+  +      L A   LQ    R    A+R+L++
Sbjct: 855  -RNKYQMMLREHKSIIIQKHVRGWLARVHYHR---TLKAIVYLQCCYRR--MMAKRELKK 908

Query: 202  VVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH 261
            +        R +  +K      E +I++ ++ + ++ K  +   E++ + +   +   + 
Sbjct: 909  LKIEA----RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK 964

Query: 262  ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKK 321
            + S ++ L   E+E + +      +  +L EE + L   L      ++ + E     + +
Sbjct: 965  LRSDVERLRMSEEEAKNA----TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020

Query: 322  EQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWE 381
             ++L+   +   +    E +++        +      E +L  + K  E ++  +R  ++
Sbjct: 1021 TEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.5 bits (160), Expect = 8e-11
 Identities = 51/317 (16%), Positives = 109/317 (34%), Gaps = 41/317 (12%)

Query: 305  LKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAI 364
              R  A   R        QK       +  K    ++      ++ LR      + ++ +
Sbjct: 805  QARCYATFLRRTRAAIIIQKFQRMY--VVRKRYQCMRDATIALQALLRGYLVRNKYQMML 862

Query: 365  KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEE 424
            +       I+K  R W  R       +  +  +     + ++  + K K         ++
Sbjct: 863  REH-KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKK 921

Query: 425  KENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSE 484
                L     E  + +  LQ++ +E N     L + +++L+          +KL +    
Sbjct: 922  LHIGL-----ENKIMQ--LQRKIDEQNKEYKSLLEKMNNLEITYST---ETEKLRSDVER 971

Query: 485  AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 544
                       +EE      + L L  E  KL+ E  + + E + I+E  ++ + E E++
Sbjct: 972  L-------RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 545  AVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQ 604
              E       LK++   L+ E++ +     R +    +E  E M K          K+ +
Sbjct: 1025 VSE-------LKEQNTLLKTEKEEL----NRRIHDQAKEITETMEK----------KLVE 1063

Query: 605  ERADFLLGIEMQKRDLE 621
            E     L +  ++   +
Sbjct: 1064 ETKQLELDLNDERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.4 bits (144), Expect = 6e-09
 Identities = 29/250 (11%), Positives = 84/250 (33%), Gaps = 16/250 (6%)

Query: 491  LEIKLKEELDVVRAQKLELMVETDKLQLEKA--KFEAEWEMIDEKREELRKEAERVAVER 548
              ++          +   +  +   +  E      +        +    R     V ++ 
Sbjct: 836  QCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQC 895

Query: 549  VVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD 608
                   K E   L+ E  ++ +++K+    L  +  +   K+  ++ E+ + +++    
Sbjct: 896  CYRRMMAKRELKKLKIEARSV-ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN- 953

Query: 609  FLLGIEMQKRDLENCIEKRREELESSFREREKAFE-----EEKMREFQQISSLKEKAEKE 663
                +E+        +    E L  S  E + A       +E++ + ++     +  +K 
Sbjct: 954  ----LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 664  LEQVTLEIK-RLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREE 722
            +E+   + K   +    E+         E  ELN  I +    ++  E   + L  + ++
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ--AKEITETMEKKLVEETKQ 1067

Query: 723  IQAESERLKK 732
            ++ +    + 
Sbjct: 1068 LELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 59.0 bits (143), Expect = 7e-09
 Identities = 46/318 (14%), Positives = 96/318 (30%), Gaps = 10/318 (3%)

Query: 94   EAAELLQKHDRASHLSAIAEARKREESLKK-TLGVEKECIASLE-KAVHEIRAESAETKV 151
             A   +QK  R          RK+   +++  + +++             +R   A   +
Sbjct: 769  AACIRIQKTIRGWL------MRKKYMRMRRAAITIQRYVRGHQARCYATFLRRTRAAIII 822

Query: 152  AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSR 211
                +    R   +  +      +A L                    +Q+ V        
Sbjct: 823  QKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVH 882

Query: 212  RIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSR 271
               + KA    +        +    + KI  +  ER       L  +   +  K+ E ++
Sbjct: 883  YHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNK 942

Query: 272  KEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQET 331
            + K L     N+E  +    E+  +    L    +  +    R  SLQ +E   L  +  
Sbjct: 943  EYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ-EEIAKLRKELH 1001

Query: 332  LASKESNEIQKIIANHESALRVKQSEFEAELA-IKYKLAEDEIEKKRRAWELRDLDLGQR 390
                E   I++    ++       SE + +   +K +  E       +A E+ +    + 
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 391  EESLLEREHDLEVQSRAL 408
             E   + E DL  +    
Sbjct: 1062 VEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 27/215 (12%), Positives = 61/215 (28%), Gaps = 15/215 (6%)

Query: 582  REREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKA 641
                   NK      E  + I Q+     L      R L+  +  +        +   K 
Sbjct: 849  LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKK 908

Query: 642  FEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE 701
             + E     +    L    E ++ Q+  +I   + E   +       +  ++     +  
Sbjct: 909  LKIEARSVERYKK-LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967

Query: 702  LMVQRQKLEEQRQLLHAD-----------REEIQAESERLKKLEDLKIAVDYM---AVSE 747
             + + +  EE+ +                R+E+       K +E+      +     VSE
Sbjct: 968  DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027

Query: 748  MQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQK 782
            ++        +K    R ++ Q       +     
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV 1062

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 53.5 bits (129), Expect = 4e-07
 Identities = 27/253 (10%), Positives = 73/253 (28%), Gaps = 20/253 (7%)

Query: 498 ELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAER-VAVERVVVSKSLK 556
           +L+  RA +        +          +         E R   +   +V+  + +    
Sbjct: 749 QLEEERASEQTKSDYLKRANELVQWINDKQA-----SLESRDFGDSIESVQSFMNAHKEY 803

Query: 557 DERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQ 616
            + +   + ++    +         + R       V        +I    +      +  
Sbjct: 804 KKTEKPPKGQEVSELE-AIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEH 862

Query: 617 KRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDL 676
              L   ++++++      +      + E     + +     +    +  V  ++K L+ 
Sbjct: 863 AEALRIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEA 922

Query: 677 ERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQL-------------LHADREEI 723
              E      + + +   +   + EL         +R+                  +  +
Sbjct: 923 FDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTL 982

Query: 724 QAESERLKKLEDL 736
            AE ERL+K+EDL
Sbjct: 983 LAELERLQKIEDL 995

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 15/230 (6%)

Query: 223 KEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRAN 282
            +++   E +   D  + +Q       + +      +   +S+L+ +    +  +     
Sbjct: 775 NDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQT-KLRLIK 833

Query: 283 VEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQK 342
            E          + +D T  +L K E+   E      K+++K+ V  +     + N I K
Sbjct: 834 REPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ-----KYNRILK 888

Query: 343 IIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLE 402
            + N  +   V     E   +I        ++ K +  E  D +    E         + 
Sbjct: 889 KLENWATTKSVYLGSNETGDSIT------AVQAKLKNLEAFDGECQSLEGQSNSDLLSIL 942

Query: 403 VQ-SRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVN 451
            Q +    +   +L ER      ++      +  A+  K+ L  E E + 
Sbjct: 943 AQLTELNYNGVPELTERKDTFFAQQWT--GVKSSAETYKNTLLAELERLQ 990

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 39/264 (14%), Positives = 83/264 (31%), Gaps = 16/264 (6%)

Query: 196  ERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL 255
            E++L     +         + +      +++   E +   D  + +Q       + +   
Sbjct: 759  EQRLGSEQTK---SDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTE 815

Query: 256  NEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 315
               +   +S+L+ +    +  +      E          + +D T  +L K E+   E  
Sbjct: 816  KPPKGQEVSELEAIYNSLQT-KLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874

Query: 316  ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEK 375
                K+++K+ V  +     + N I K + N  +   V     E        +       
Sbjct: 875  RIELKRQKKIAVLLQ-----KYNRILKKLENWATTKSVYLGSNETG-DSITAVQAKLKNL 928

Query: 376  KRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 435
            +    E + L  GQ    LL     L        +   +L ER      ++      +  
Sbjct: 929  EAFDGECQSL-EGQSNSDLLSILAQLT---ELNYNGVPELTERKDTFFAQQWT--GVKSS 982

Query: 436  ADLKKSLLQKEKEEVNIIKSDLQK 459
            A+  K+ L  E E +  I+     
Sbjct: 983  AETYKNTLLAELERLQKIEDLHHH 1006

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 34/256 (13%), Positives = 77/256 (30%), Gaps = 21/256 (8%)

Query: 535  EELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD----VDSLNREREEFMNK 590
            EE R++       +    K   +    +  ++ ++  +   D    V S     +E+   
Sbjct: 755  EEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKT 814

Query: 591  MVHEHSEWFTKIQQERADFLLGIEMQKRDLE--------NCIEKRREELESSFREREKAF 642
                  +  ++++         + + KR+          N I+     LE + +E  +A 
Sbjct: 815  EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874

Query: 643  EEEKMREFQQISSLKE----KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNS 698
              E  R+ +    L++      + E    T  +     E  +     Q + +     +  
Sbjct: 875  RIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGE 934

Query: 699  IEEL--MVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQ---RSRL 753
             + L        L    QL   +   +   +ER       +      +    +    + L
Sbjct: 935  CQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAEL 994

Query: 754  EHSQKKISAKRHLNQQ 769
            E  QK      H +  
Sbjct: 995  ERLQKIEDLHHHHHHH 1010

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 34/296 (11%), Positives = 78/296 (26%), Gaps = 38/296 (12%)

Query: 357  EFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 416
              E     +    + + +  +RA EL      ++         D     ++ ++  K+  
Sbjct: 753  RIEEAREQRLGSEQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYK 812

Query: 417  ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 476
            +     + +E   +     +   K  L K +  V        +  S+    +K      +
Sbjct: 813  KTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAE 872

Query: 477  KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREE 536
             L        +++VL  K    L     +KLE    T  + L   +       +  K + 
Sbjct: 873  ALRIELKRQKKIAVLLQKYNRIL-----KKLENWATTKSVYLGSNETGDSITAVQAKLKN 927

Query: 537  LRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHS 596
            L                         +             +  L       + ++     
Sbjct: 928  LEAFDGE------------------CQSLEGQSNSDLLSILAQLTELNYNGVPEL----- 964

Query: 597  EWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQ 652
                   + +  F      Q   +++  E  +  L  +  ER +  E+        
Sbjct: 965  ------TERKDTFF---AQQWTGVKSSAETYKNTLL-AELERLQKIEDLHHHHHHH 1010

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 46.0 bits (109), Expect = 8e-05
 Identities = 35/195 (17%), Positives = 88/195 (45%), Gaps = 6/195 (3%)

Query: 387  LGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKE 446
            + ++ + L E +  L +  + L D E  + +    L +K  +L    ++A+ K   + ++
Sbjct: 1908 INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQD 1967

Query: 447  KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKE---ELDVVR 503
            ++   I + D ++    LD + K++   K K  A   +A     L  ++++     + ++
Sbjct: 1968 QQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELK 2027

Query: 504  AQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA--VERVVVS-KSLKDERD 560
             ++ E++     L+   A ++ E+  +  + E+++ E+ +V   V+R +    +L  ER 
Sbjct: 2028 LKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087

Query: 561  SLRQERDAMRDQHKR 575
               Q+ +    Q   
Sbjct: 2088 RWEQQSENFNTQMST 2102

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 25/233 (10%), Positives = 78/233 (33%), Gaps = 29/233 (12%)

Query: 432  FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVL 491
            +    +    L+ ++++++   +  L   L  L + + QV       + ++    + +  
Sbjct: 1897 YLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQV-------KDLQVSLAQKNRE 1949

Query: 492  EIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVV 551
                 E+ +       + +    ++  ++   E + +   E + +L    + +AV++V  
Sbjct: 1950 LDVKNEQAN-------QKLK---QMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKA 1999

Query: 552  SKSLKDERDS--LRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADF 609
               L+    +  LR+E + + +         +                    I   + ++
Sbjct: 2000 YADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALE--------KSIATYKEEY 2051

Query: 610  LLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEK 662
               I      ++    K + +++ S    +     E+ R  QQ  +   +   
Sbjct: 2052 ATLIRE-TEQIKTESSKVKNKVDRSIALLD-NLNSERGRWEQQSENFNTQMST 2102

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863

 Score = 43.4 bits (101), Expect = 5e-04
 Identities = 66/492 (13%), Positives = 151/492 (30%), Gaps = 42/492 (8%)

Query: 189 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERL 248
             Y + A   L+ +      L  R  + +   +  ++++   R      K    QE  +L
Sbjct: 253 EDYEKLASDLLEWIRRTIPWLENR--APENTMQAMQQKLEDFRDYRRLHKPPKVQEKCQL 310

Query: 249 ------LDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV 302
                 L  +  L+ R   + S+ + +S             +   + L  E   L+    
Sbjct: 311 EINFNTLQTKLRLSNRPAFMPSEGKMVSDINNAWGGLEQAEKGYEEWLLNEIRRLERLDH 370

Query: 303 SLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHESA---LRVKQSEFE 359
              K  +     E+    KE  L   Q+   +   +EI+ ++  HE+    L   Q   E
Sbjct: 371 LAEKFRQKASIHESWTDGKEAML--QQKDYETATLSEIKALLKKHEAFESDLAAHQDRVE 428

Query: 360 AELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERS 419
              AI  +L E +          R   +  + ++L                  + + +  
Sbjct: 429 QIAAIAQELNELDYYDSPSV-NARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLY 487

Query: 420 HLLEEKENKLIAF--EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDK 477
               ++      +      DL+ + +    EE+  + +  ++  ++L +  K+       
Sbjct: 488 LEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGI 547

Query: 478 LEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREEL 537
              +        V          +   +         +L   + +   E     ++ E L
Sbjct: 548 HNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQNERL 607

Query: 538 RKEAERVAVE--------RVVVSKSLKDERDSLRQERDAMRD------QHKRDVDSLNRE 583
           RK+    A             + +   +   +L  + + +R        +K  +D L  +
Sbjct: 608 RKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKIDQLEGD 667

Query: 584 REEFMNKMVHEH---SEWFTKIQQERADFLLGIEMQKRDLENCIEKRR---------EEL 631
            ++    ++ ++   +     I+      L  I     ++EN I  R           E 
Sbjct: 668 HQQIQEALIFDNKHTNYTMEHIRVGWEQLLTTIARTINEVENQILTRDAKGISQEQMNEF 727

Query: 632 ESSFREREKAFE 643
            +SF   ++   
Sbjct: 728 RASFNHFDRKKT 739

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1118
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.93
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.79
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	94.9
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	94.46
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.64
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	93.04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	92.31
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	91.54
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.55
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	87.81
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	84.36

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.93  E-value=1.9e-05  Score=97.38  Aligned_cols=42  Identities=24%  Similarity=0.355  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 001234          687 RRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESE  728 (1118)
Q Consensus       687 ~le~e~aEm~kdIeeL~~ls~KLk~QRE~~~~ERe~fl~~vE  728 (1118)
                      .++.+..++...+++......++..++..+..+...+...++
T Consensus      1120 ~Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Ie 1161 (1184)
T 1i84_S         1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161 (1184)
T ss_dssp             ------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333344444444444444444443333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.79  E-value=4.4e-05  Score=94.16  Aligned_cols=33  Identities=12%  Similarity=0.209  Sum_probs=0.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh
Q 001234          561 SLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE  594 (1118)
Q Consensus       561 rLK~EK~~~r~~~krelEsL~~ekEsF~~kMehE  594 (1118)
                      .|..+...++..+.. +...+...-+...+|+.|
T Consensus      1148 ~L~~ele~L~~~Iee-l~~vn~aq~el~~~~e~~ 1180 (1184)
T 1i84_S         1148 DLSEELEALKTELED-TLDTTATQQELRGSDYKD 1180 (1184)
T ss_dssp             ----------------------------------
T ss_pred             HHHHHHHHHHHHHHH-HhhHHHHHHHHHhhhccc
Confidence            444444444444432 333344444444444433

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=94.90  E-value=2.5  Score=44.20  Aligned_cols=90  Identities=17%  Similarity=0.185  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 001234          497 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD  576 (1118)
Q Consensus       497 eEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~~kre  576 (1118)
                      .||+........|..+.-++-...+..+.+++.+....+.++.+                  .+.++.+.++.-..+..+
T Consensus        97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~------------------l~~~~~~~~~~~~e~~~e  158 (256)
T 3na7_A           97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKL------------------ALELESLVENEVKNIKET  158 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555544444444444444333333                  334445555566667777


Q ss_pred             hhhhhhhHHHHHHhhhhhhhhHHHHHHH
Q 001234          577 VDSLNREREEFMNKMVHEHSEWFTKIQQ  604 (1118)
Q Consensus       577 lEsL~~ekEsF~~kMehErs~~~eKiq~  604 (1118)
                      ++.|.-.|+.|...|...=...+++|..
T Consensus       159 ~~~l~~~r~~l~~~i~~~lL~~Yerir~  186 (256)
T 3na7_A          159 QQIIFKKKEDLVEKTEPKIYSFYERIRR  186 (256)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            8888888888888888666666666643

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=94.46  E-value=5.9  Score=54.66  Aligned_cols=30  Identities=10%  Similarity=0.003  Sum_probs=15.3

Q ss_pred             HhHhhhhhhhHHHHHHHHHhchHHHHHHHHH
Q 001234          213 IASFKADCEEKEREIIRERQSLSDRKKILQQ  243 (1118)
Q Consensus       213 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe  243 (1118)
                      ..+|.+.++.+.=++.+- =++.+|..-|+.
T Consensus      1665 LAa~i~~~~vfqi~i~k~-Y~~~~f~eDLk~ 1694 (3245)
T 3vkg_A         1665 FVAWMNGLSIYTIKVNNN-YKSSDFDDDLRM 1694 (3245)
T ss_dssp             HHHHHTTCEEECCC-----CCHHHHHHHHHH
T ss_pred             HHHHHhCCeeEEEeeeCC-CCHHHHHHHHHH
Confidence            456777777666555432 235566555543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=93.64  E-value=1.2  Score=55.53  Aligned_cols=92  Identities=17%  Similarity=0.314  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 001234          493 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ  572 (1118)
Q Consensus       493 seLKeEId~~R~Qke~LlkEae~Lk~eKekFE~EWE~LDEKRael~KEa~~I~eEre~lek~~~~E~erLK~EK~~~r~~  572 (1118)
                      ..|.+||+..|.+-..+.+|-+.|++.......   .|.+|-..|++                  |-..|++..+++...
T Consensus       987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~---~L~~kv~~L~~------------------e~~~L~qq~~~l~~~ 1045 (1080)
T 2dfs_A          987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH---ETEQLVSELKE------------------QNTLLKTEKEELNRR 1045 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH------------------HHHHHHHHHHHHHHH
Confidence            345555555555555555555555444333331   22233333333                  444555555555554


Q ss_pred             HHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHH
Q 001234          573 HKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERAD  608 (1118)
Q Consensus       573 ~krelEsL~~ekEsF~~kMehErs~~~eKiq~Erad  608 (1118)
                      +...-+.+.   +.+-..|++++..+..-...||+.
T Consensus      1046 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 1078 (1080)
T 2dfs_A         1046 IHDQAKEIT---ETMEKKLVEETKQLELDLNDERLR 1078 (1080)
T ss_dssp             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444333   566777777777777766666664

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=93.04  E-value=9.9  Score=39.74  Aligned_cols=122  Identities=18%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             hHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 001234          404 QSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQ----KEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE  479 (1118)
Q Consensus       404 k~~~lkEKEkdl~~Ksk~LKEkEksL~aeEK~le~ek~~L~----~eKEel~~lK~dlEK~~a~~e~q~~qi~ee~E~Lk  479 (1118)
                      +++.|-+.. .++.++..|...-+.|.++=..++.+...+.    +-+..+..++.++.+....+..-..+|..-+.+|.
T Consensus         6 ~L~~L~~LQ-~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~   84 (256)
T 3na7_A            6 HLKQLIEIS-HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS   84 (256)
T ss_dssp             HHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444443 3455555555555555444444433333333    33333334444444444444444444444444443


Q ss_pred             hhhhhhhhHHHHHHH---HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 001234          480 AMKSEAGELSVLEIK---LKEELDVVRAQKLELMVETDKLQLEKAKFEAEW  527 (1118)
Q Consensus       480 iteeER~E~lrLQse---LKeEId~~R~Qke~LlkEae~Lk~eKekFE~EW  527 (1118)
                      ... ---||..|+-+   ++.+|..+.....++|...+.++......+...
T Consensus        85 ~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l  134 (256)
T 3na7_A           85 EIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM  134 (256)
T ss_dssp             HCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322 12234444433   345555555555555555555554444444333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=92.31  E-value=17  Score=50.42  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=14.5

Q ss_pred             HhhhhhhhhhHHHHHHHHHHHHhh
Q 001234          553 KSLKDERDSLRQERDAMRDQHKRD  576 (1118)
Q Consensus       553 k~~~~E~erLK~EK~~~r~~~kre  576 (1118)
                      .-+.+|..|=...-..+..++..=
T Consensus      2080 ~gL~~Ek~RW~~~~~~l~~~~~~L 2103 (3245)
T 3vkg_A         2080 DNLNSERGRWEQQSENFNTQMSTV 2103 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhccccHHHHHHHHHHHHHhc
Confidence            335567777666666666655543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=91.54  E-value=6.4  Score=49.26  Aligned_cols=25  Identities=16%  Similarity=0.228  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHHHHHHhHHhhHHHHH
Q 001234          494 KLKEELDVVRAQKLELMVETDKLQL  518 (1118)
Q Consensus       494 eLKeEId~~R~Qke~LlkEae~Lk~  518 (1118)
                      .|.+.|..+..+...|....|+|..
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.55  E-value=8.5  Score=43.37  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 001234          448 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK  520 (1118)
Q Consensus       448 Eel~~lK~dlEK~~a~~e~q~~qi~ee~E~LkiteeER~E~lrLQseLKeEId~~R~Qke~LlkEae~Lk~eK  520 (1118)
                      .++..++.++....+.+.....+|....+.+.+.+++..+   ....|++++.+.+.....+..+...++++.
T Consensus       463 ~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  532 (597)
T 3oja_B          463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLAR---SSDNLNKVFTHLKERQAFKLRETQARRTEA  532 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCccccccCC---HHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence            4555555555555555666666666666665555443332   234556666655555555544444444443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=87.81  E-value=3.4  Score=46.60  Aligned_cols=18  Identities=22%  Similarity=0.344  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHhHH
Q 001234          494 KLKEELDVVRAQKLELMV  511 (1118)
Q Consensus       494 eLKeEId~~R~Qke~Llk  511 (1118)
                      +|++|+...+.+...|+.
T Consensus       562 ~l~~e~~~~~~~~~~l~~  579 (597)
T 3oja_B          562 ELRQETSLKRQKVKQLEA  579 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=84.36  E-value=37  Score=34.22  Aligned_cols=135  Identities=15%  Similarity=0.147  Sum_probs=74.3

Q ss_pred             HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhhHHHhhhhhHHHHH
Q 001234          133 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR  212 (1118)
Q Consensus       133 adLEKAL~emr~E~AevK~tsesKLaEA~aLv~~~eeKslEvE~KL~aAea~~AEa~Rk~s~aerKL~eVEaRE~~LrRe  212 (1118)
                      ..||.-|++. ++-|.      .|..++..    ++.-+..+|.++.+|+++..+.---...+...|+.+++++..-...
T Consensus         3 ~~lE~qlkea-ae~ad------~KyeEvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqr   71 (155)
T 2efr_A            3 KQLEDKVEEL-LSKNY------HLENEVAR----LKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQK   71 (155)
T ss_dssp             HHHHHHHHHH-HHHHH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHhH------HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHH
Confidence            4577777777 44444      44456555    6666667788888888877666655566666666666655432211


Q ss_pred             HhHhhhhhhhHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhhhhhhhHhhHhhHHHHhHhHHHHHHHhhhHHHHHHHHhh
Q 001234          213 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE  292 (1118)
Q Consensus       213 rlSf~~E~ea~E~~~~~qRe~L~eweKkLqe~eerL~e~q~~LNqREe~~~e~~~~l~~kEkeLEe~kkkie~~~~~Lk~  292 (1118)
                             -+.|+.+       +....-+|.+.+.|.              ..-.+.+..+++.++.+.-.+.......+.
T Consensus        72 -------Ed~yEeq-------Ik~L~~kLKEAE~RA--------------E~AERsv~kLEk~id~lEd~L~~~Kek~~~  123 (155)
T 2efr_A           72 -------EDKYEEE-------IKVLSDKLKEAETRA--------------EFAERSVTKLEKSIDDLEDELYAQKLKYKA  123 (155)
T ss_dssp             -------HHHHHHH-------HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHH-------HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   1122222       223333444444444              344444555555555555555555555555


Q ss_pred             hhhhhhHhHHHhhh
Q 001234          293 EKSNLDLTLVSLLK  306 (1118)
Q Consensus       293 ke~dl~~rl~~l~~  306 (1118)
                      -...|...+..|+.
T Consensus       124 i~~eLd~tl~el~~  137 (155)
T 2efr_A          124 ISEEMKQLEDKVEE  137 (155)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            55556666666554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00