Citrus Sinensis ID: 001278
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1109 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FLH0 | 1042 | Putative nuclear matrix c | no | no | 0.674 | 0.717 | 0.287 | 5e-61 |
| >sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1 | Back alignment and function desciption |
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Score = 236 bits (603), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 235/817 (28%), Positives = 420/817 (51%), Gaps = 69/817 (8%)
Query: 1 MGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQC 60
MGLLL+EK E +S+ EE++ S +E+ RE+SA++ A +EA+KRE++L++ + + K+C
Sbjct: 80 MGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVGIAKEC 139
Query: 61 VADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRK 120
++ LEK L +M E A+TK+ + T+++A+ ++ K + E K AAEA AE NR
Sbjct: 140 ISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQAEANRY 199
Query: 121 SSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSEL 180
E KL+E+ESRE + R S +E E E +R+ L E K LQ ERL +
Sbjct: 200 HRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHERLLDA 259
Query: 181 RRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEI-----NSRLAELVV 235
+ +LNQRE + I + ++L ELEK +D + + +E N +A +
Sbjct: 260 QVSLNQRE------DHIF-ARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALC 312
Query: 236 KEREADCLRS-----------------------------TVEMKEKRLLTIEEKLNARER 266
+RE C S ++ KE+ LL EEK+ ++E
Sbjct: 313 AKREEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKES 372
Query: 267 VEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERR 326
IQ +L +Q IL ++ + E ELE K KS+E E+ SK A + +E +I RE+ + +
Sbjct: 373 ELIQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEK 432
Query: 327 EQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEI 386
E L+ +S + EKE D+ + ++ E+EK + A E+ + + L +KE L+ L +E+
Sbjct: 433 EHDLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLEL 492
Query: 387 DQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEHEDLQ 446
Q + + ++ QKL+ + E SEL L+ +LK++++ R Q+ +L E + L+
Sbjct: 493 QQSLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLK 552
Query: 447 QDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLKKEECAMRDYVQREI 506
++ KFE EWE +D KR+E+ KE E I +++ + +K+E A+R+ + ++
Sbjct: 553 VEKAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDV 612
Query: 507 EAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLEEFEMQRMNQEAELLNRRDKMEKELQE 566
E++ ++E F M E K + +R L EMQ+ E + N+R+++E ++
Sbjct: 613 ESLNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRD 672
Query: 567 RTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEKEKHEVKVNREKLQEQQLGMRK 626
R + FE++++ I LKE+AE E++ ++ E +L+ E+ E+K++RE+ + + ++
Sbjct: 673 REKAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKD 732
Query: 627 DIDELDILCRRLYGDREQFKREKERFLEFVEKHTSCKNCGEMMRAFVISNLQLPDDEARN 686
++EL + +L R + E++ +E+ +N + ++ +QL +
Sbjct: 733 SVEELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSN----- 787
Query: 687 DIPLPQVAERCLGNRQGDVAAPYD-------SNISNSHGGMNLG-------RADSGGHMS 732
L + E+ +Q V+ + S +SNS G N S S
Sbjct: 788 ---LERSWEKVSALKQKVVSRDDELDLQNGVSTVSNSEDGYNSSMERQNGLTPSSATPFS 844
Query: 733 WLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPT 769
W+++CT+ IF SP K ++++ E + VP+
Sbjct: 845 WIKRCTNLIFKTSPEK------STLMHHYEEEGGVPS 875
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1109 | ||||||
| 147815739 | 1234 | hypothetical protein VITISV_038920 [Viti | 0.979 | 0.880 | 0.558 | 0.0 | |
| 359473006 | 1213 | PREDICTED: putative nuclear matrix const | 0.971 | 0.887 | 0.559 | 0.0 | |
| 255566809 | 1172 | ATP binding protein, putative [Ricinus c | 0.945 | 0.895 | 0.525 | 0.0 | |
| 297737881 | 1122 | unnamed protein product [Vitis vinifera] | 0.904 | 0.893 | 0.521 | 0.0 | |
| 224101667 | 1008 | predicted protein [Populus trichocarpa] | 0.822 | 0.904 | 0.551 | 0.0 | |
| 356502495 | 1210 | PREDICTED: putative nuclear matrix const | 0.977 | 0.895 | 0.471 | 0.0 | |
| 356526607 | 1191 | PREDICTED: putative nuclear matrix const | 0.960 | 0.894 | 0.449 | 0.0 | |
| 356568883 | 1191 | PREDICTED: putative nuclear matrix const | 0.956 | 0.890 | 0.451 | 0.0 | |
| 356526609 | 1190 | PREDICTED: putative nuclear matrix const | 0.959 | 0.894 | 0.446 | 0.0 | |
| 449525632 | 1204 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.957 | 0.882 | 0.439 | 0.0 |
| >gi|147815739|emb|CAN74873.1| hypothetical protein VITISV_038920 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1037 bits (2682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 631/1130 (55%), Positives = 842/1130 (74%), Gaps = 44/1130 (3%)
Query: 1 MGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQC 60
MGLLLIEKKEWTSK EEL Q+ E QEILKRE+SAH IA SE EKRE+NLR+AL +E+QC
Sbjct: 128 MGLLLIEKKEWTSKYEELSQALAEAQEILKREKSAHFIAISEVEKREENLRKALGVERQC 187
Query: 61 VADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRK 120
VA+LEKAL ++ E +Q KL SE L+DAN L+ IE +SLEVEEK AA+AKLAE +RK
Sbjct: 188 VAELEKALGEIHAEHSQIKLSSETKLSDANALVAKIEKRSLEVEEKLLAADAKLAEASRK 247
Query: 121 SSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSEL 180
SSELE KLQE+E+RESV++RERLSL EREAHEA F+KQ+EDLREWE+KLQ G+ERL E
Sbjct: 248 SSELERKLQEVEARESVLRRERLSLNAEREAHEATFHKQKEDLREWERKLQEGEERLCEG 307
Query: 181 RRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREA 240
RR +NQRE KANE +R LK KER+LEE +KKIDL S +K +ED+IN+RLAEL VKE++A
Sbjct: 308 RRIINQREEKANEIDRTLKLKERNLEEAQKKIDLDSLNVKVKEDDINNRLAELTVKEKQA 367
Query: 241 DCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEE 300
+ +R +E+KEK L+ ++EKL+ARERVEIQKLLD+ RAILD K+QEFELE+E+KR S++E
Sbjct: 368 ESMRGILEVKEKELIVLQEKLSARERVEIQKLLDEHRAILDTKKQEFELEMEQKRNSVDE 427
Query: 301 EMRSKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKA 360
E+RSK+ ++Q+E E+ HREEKL +REQAL+K+ +RVKEKE +L A+LK++KE+EK +KA
Sbjct: 428 ELRSKVHEVEQKEVEVLHREEKLGKREQALEKRLERVKEKEKELEAKLKTLKEKEKSLKA 487
Query: 361 EEKKLELEKQKLIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRL 420
EEK++E EK++++ADKESL +LK E+++I ++ +QELQI EE ++LK+ EEE+SE RL
Sbjct: 488 EEKRVEGEKKQMLADKESLHLLKDELEKIRADITEQELQIHEETERLKVTEEERSEHHRL 547
Query: 421 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKL 480
Q +LKQ+I+ RHQ+E+L KE EDL+Q+R FEK+WE LDEKR I KE +I DEK+KL
Sbjct: 548 QLELKQEIDKCRHQEEMLQKEREDLKQERIMFEKDWEALDEKRAVITKEMREIGDEKEKL 607
Query: 481 EKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLE 540
EKL S EERLKKE+ AM +++QRE+EA+R++KE+F A M+HEQ+ LSEKA+ND +ML
Sbjct: 608 EKLHLSEEERLKKEKLAMEEHIQRELEAVRIEKESFAAIMKHEQVTLSEKAQNDHSQMLR 667
Query: 541 EFEMQRMNQEAELLNRRDKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSER 600
+FE+++ + E E+ NR+D+++K LQER R FEE+RER LN+I HLKEVA EI+E+K+ER
Sbjct: 668 DFELRKRDLEIEMQNRQDEIQKRLQERERAFEEERERELNNINHLKEVARREIEEMKTER 727
Query: 601 DQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 660
++EKEK EV +N+ +L+ QL MRKDIDEL IL R+L REQF +E++RFL FV+KH
Sbjct: 728 RRIEKEKQEVLLNKRQLEGHQLEMRKDIDELGILSRKLKDQREQFIKERDRFLTFVDKHK 787
Query: 661 SCKNCGEMMRAFVISNLQLPDDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGGM 720
+CKNCGE+ R FV+++LQLP+ E PLP +A+ L + QG++AA +N+ G +
Sbjct: 788 TCKNCGEITREFVLNDLQLPEMEVEA-FPLPNLADEFLNSPQGNMAASDGTNVKIXTGEI 846
Query: 721 NLGRADSGGHMSWLRKCTSKIFSISPIKKSEHISTSMLEEEEPQSAVPTIMQEKAEGPGV 780
+L + SGG MS+LRKC +KIF++SP KKSEH+ +L EE P + + EKAEGP +
Sbjct: 847 DLVSSGSGGRMSFLRKCATKIFNLSPSKKSEHVGVQVLREESPLLDLQVNL-EKAEGPSI 905
Query: 781 LVSKEAIGYSIPEDEPQSSFRLVNDSTN----------REMDDEYAPSVDGHSYMDSKVE 830
+G SI EDE + SF + NDS + RE+D +A SVDG S M SK +
Sbjct: 906 ------VGQSIAEDELEPSFGIANDSFDIQQLHSDSVMREVDGGHAQSVDGVSNMGSKEQ 959
Query: 831 DVAEDSQQSELRSGKRRPGRKRKSGVNRTRSVKAAVEDAKLFLGESPEGAGLNASFQAHE 890
+ EDSQQSEL+SG+R+PGRKR++GV+RTRSVK + E P N S +E
Sbjct: 960 EGPEDSQQSELKSGRRKPGRKRRTGVHRTRSVKNVLNG-----DERP-----NDSTYTNE 1009
Query: 891 DSQGISSHTQE-ASNMAKKRRRPQTSKTTQSEKDGADSEGYSDSVTAGGGRRKRHQTVAT 949
+ + +SH ++ AS + +KR+R +S+ T+SE+D ADSEG SDSVTA GGR KR QTVA
Sbjct: 1010 EGERETSHAEKAASTITRKRQRAPSSRITESEQDAADSEGRSDSVTA-GGRGKRRQTVAP 1068
Query: 950 VSQTPGERRYNLRRHKTSSAVLALEASADLSKANK--TVAEVTNPVEVVSNPKSASTFPP 1007
V QTPGE+RYNLRRHKT+ V +ASA+L K ++ N ++ +NPK+AS+ P
Sbjct: 1069 VVQTPGEKRYNLRRHKTAGTVATAQASANLPKRDEKGGDGGDDNTLQTKANPKAASS-PS 1127
Query: 1008 AVLNENGKSTHLVQVTSVKSMEL---SRDRAVRFKSTTNIVDENADAPKSIENTVLSEEV 1064
++N K+T LV VT++KS+E+ S DR VRFK T +IV N D+ + EN L +E+
Sbjct: 1128 LADSDNPKTTPLVHVTTLKSVEIREYSPDRVVRFK-TVDIVGGNNDSARLAENMELRQEI 1186
Query: 1065 NG----TSEYVDEDENGGRV-LEDEEDDDDDSDHPGEASIGKKLWNFFTS 1109
G T Y EDENG ED+ D+D+S+HPG+ASIGKKLWNFFT+
Sbjct: 1187 PGNPGDTPGY--EDENGSMSHEEDDNSDEDESEHPGDASIGKKLWNFFTT 1234
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473006|ref|XP_002278531.2| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255566809|ref|XP_002524388.1| ATP binding protein, putative [Ricinus communis] gi|223536349|gb|EEF37999.1| ATP binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|297737881|emb|CBI27082.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|224101667|ref|XP_002312375.1| predicted protein [Populus trichocarpa] gi|222852195|gb|EEE89742.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356502495|ref|XP_003520054.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356526607|ref|XP_003531908.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356568883|ref|XP_003552637.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356526609|ref|XP_003531909.1| PREDICTED: putative nuclear matrix constituent protein 1-like protein-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449525632|ref|XP_004169820.1| PREDICTED: LOW QUALITY PROTEIN: putative nuclear matrix constituent protein 1-like protein-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1109 | ||||||
| TAIR|locus:2031875 | 1128 | LINC2 "LITTLE NUCLEI2" [Arabid | 0.733 | 0.720 | 0.446 | 8.9e-182 | |
| TAIR|locus:2019529 | 1132 | LINC1 "AT1G67230" [Arabidopsis | 0.858 | 0.840 | 0.372 | 1.1e-170 | |
| TAIR|locus:2012423 | 1085 | LINC3 "LITTLE NUCLEI3" [Arabid | 0.580 | 0.593 | 0.426 | 5e-153 | |
| TAIR|locus:2169950 | 1042 | LINC4 "LITTLE NUCLEI4" [Arabid | 0.761 | 0.809 | 0.226 | 2.3e-45 | |
| ZFIN|ZDB-GENE-050208-317 | 1422 | tnks1bp1 "tankyrase 1 binding | 0.567 | 0.442 | 0.240 | 2.2e-33 | |
| ZFIN|ZDB-GENE-030616-583 | 1376 | acin1a "apoptotic chromatin co | 0.562 | 0.453 | 0.258 | 4.1e-33 | |
| GENEDB_PFALCIPARUM|PF11_0486 | 2055 | PF11_0486 "MAEBL, putative" [P | 0.533 | 0.288 | 0.236 | 2.8e-25 | |
| UNIPROTKB|Q8IHP3 | 2055 | PF11_0486 "MAEBL, putative" [P | 0.533 | 0.288 | 0.236 | 2.8e-25 | |
| DICTYBASE|DDB_G0271058 | 1528 | vilC "villin-like protein C" [ | 0.518 | 0.376 | 0.272 | 4e-25 | |
| DICTYBASE|DDB_G0295683 | 1589 | DDB_G0295683 "cofilin/tropomyo | 0.457 | 0.319 | 0.241 | 1.4e-21 |
| TAIR|locus:2031875 LINC2 "LITTLE NUCLEI2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1645 (584.1 bits), Expect = 8.9e-182, Sum P(2) = 8.9e-182
Identities = 368/825 (44%), Positives = 514/825 (62%)
Query: 1 MGLLLIEKKEWTSKIEELRQSFEETQEILKREQSAHLIAFSEAEKREDNLRRALSMEKQC 60
MGLLL+E KE SK E+L Q+F+E QEILKREQS+HL A + E+RE+NLR+AL +EKQC
Sbjct: 103 MGLLLMENKELVSKHEQLNQAFQEAQEILKREQSSHLYALTTVEQREENLRKALGLEKQC 162
Query: 61 VADLEKALRDMGEERAQTKLFSEKTLTDANTLLGGIEGKSLEVEEKFHAAEAKLAEVNRK 120
V +LEKALR++ EE ++ +L SE L +AN L+ + G+S +VE K ++AE+KLAE RK
Sbjct: 163 VQELEKALREIQEENSKIRLSSEAKLVEANALVASVNGRSSDVENKIYSAESKLAEATRK 222
Query: 121 SSELEMKLQELESRESVIKRERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSEL 180
SSEL+++L+E+E+RESV+++ERLS ERE++E F KQRE L EWEKKLQ +E ++E
Sbjct: 223 SSELKLRLKEVETRESVLQQERLSFTKERESYEGTFQKQREYLNEWEKKLQGKEESITEQ 282
Query: 181 RRTLNQREVKANENERILKQKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREA 240
+R LNQRE K NE E+ LK KE++LEE +K+DLS SK KE E++I RL EL KE+EA
Sbjct: 283 KRNLNQREEKVNEIEKKLKLKEKELEEWNRKVDLSMSKSKETEEDITKRLEELTTKEKEA 342
Query: 241 DCLRSTVEMKEKRLLTIEEKLNARERVEIQKLLDDQRAILDAXXXXXXXXXXXXXXXXXX 300
L+ T+ KE L EEKL ARE EIQKL+DDQ+ +L +
Sbjct: 343 HTLQITLLAKENELRAFEEKLIAREGTEIQKLIDDQKEVLGSKMLEFELECEEIRKSLDK 402
Query: 301 XXXXKISALDQQEFEISHREEKLERREQALDKKSDRVKEKENDLAARLKSVKERXXXXXX 360
KI L++Q+ EI H EEKLE+R QA++KK DRV EKE DL A+LK++KER
Sbjct: 403 ELQRKIEELERQKVEIDHSEEKLEKRNQAMNKKFDRVNEKEMDLEAKLKTIKEREKIIQA 462
Query: 361 XXXXXXXXXXXXIADKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRL 420
++DKESL+ L+ EI++I +E ++E I+EEC+ L+I +EE+ E LRL
Sbjct: 463 EEKRLSLEKQQLLSDKESLEDLQQEIEKIRAEMTKKEEMIEEECKSLEIKKEEREEYLRL 522
Query: 421 QSQLKQQIETYRHQQELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKL 480
QS+LK QIE R +E L KE E+L+Q++E+FEKEWE+LDEK+ NKE+ +I++EK+K
Sbjct: 523 QSELKSQIEKSRVHEEFLSKEVENLKQEKERFEKEWEILDEKQAVYNKERIRISEEKEKF 582
Query: 481 EKLQHSAEERLKKEECAMRDYVQREIEAIRLDKEAFEATMRHEQLVLSEKAKNDRRKMLE 540
E+ Q ERLKKEE A+R + +E++ IRL +E+FEA M HE+ L EK K ++ K+++
Sbjct: 583 ERFQLLEGERLKKEESALRVQIMQELDDIRLQRESFEANMEHERSALQEKVKLEQSKVID 642
Query: 541 EFEMQRMNQEAELLNRRDKMEKELQXXXXXXXXXXXXVLNDIAHLKEVAEGEIQEIKSER 600
+ EM R N E EL R+++ EK+L L+DI H K+ E++E+ S+R
Sbjct: 643 DLEMMRRNLEIELQERKEQDEKDLLDRMAQFEDKRMAELSDINHQKQALNREMEEMMSKR 702
Query: 601 DQLEKEKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEKHT 660
L+KE E+ +++KL+EQQ+ M DI EL L L RE F RE+ RFL FV+K
Sbjct: 703 SALQKESEEIAKHKDKLKEQQVEMHNDISELSTLSINLKKRREVFGRERSRFLAFVQKLK 762
Query: 661 SCKNCGEMMRAFVISNLQLP-DDEARNDIPLPQVAERCLGNRQGDVAAPYDSNISNSHGG 719
C +CG+++ FV+S+LQLP +DE LP + L + G A NI S G
Sbjct: 763 DCGSCGQLVNDFVLSDLQLPSNDEVAI---LPPIG--VLNDLPGSSNASDSCNIKKSLDG 817
Query: 720 MNLGRADSGG-HMSWLRKCTXXXXXXXXXXXXEH-ISTSMLEEEEPQSAVPTIMQEKAEG 777
G S MS L+KCT EH I T E+ S+V M+ K E
Sbjct: 818 DASGSGGSRRPSMSILQKCTSIIFSPSKRV--EHGIDTGK-PEQRLSSSVAVGMETKGEK 874
Query: 778 P-GVLVSKEAIGYSIPEDEPQSSFRLVNDSTNREMDDEYAPSVDG 821
P V + SIPE++ + + V +++ E+ S G
Sbjct: 875 PLPVDLRLRPSSSSIPEEDEEYTDSRVQETSEGSQLSEFQSSRRG 919
|
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| TAIR|locus:2019529 LINC1 "AT1G67230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2012423 LINC3 "LITTLE NUCLEI3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2169950 LINC4 "LITTLE NUCLEI4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030616-583 acin1a "apoptotic chromatin condensation inducer 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
| GENEDB_PFALCIPARUM|PF11_0486 PF11_0486 "MAEBL, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8IHP3 PF11_0486 "MAEBL, putative" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0271058 vilC "villin-like protein C" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
| DICTYBASE|DDB_G0295683 DDB_G0295683 "cofilin/tropomyosin type actin binding domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1109 | |||
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-19 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-17 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-17 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-16 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-15 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 1e-15 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-15 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-14 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 3e-14 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 3e-14 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-14 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 5e-14 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 4e-13 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-12 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-11 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 3e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-11 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 7e-11 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 2e-10 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 2e-10 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 6e-10 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 6e-10 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 7e-10 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 9e-10 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 1e-09 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 1e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-08 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-08 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 2e-08 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 3e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 4e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 4e-08 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 4e-08 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 6e-08 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 1e-07 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 3e-07 | |
| COG5022 | 1463 | COG5022, COG5022, Myosin heavy chain [Cytoskeleton | 4e-07 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 5e-07 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 8e-07 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 2e-06 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-06 | |
| pfam07888 | 546 | pfam07888, CALCOCO1, Calcium binding and coiled-co | 3e-06 | |
| COG1196 | 1163 | COG1196, Smc, Chromosome segregation ATPases [Cell | 4e-06 | |
| TIGR03185 | 650 | TIGR03185, DNA_S_dndD, DNA sulfur modification pro | 4e-06 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 5e-06 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 6e-06 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 6e-06 | |
| PRK00106 | 535 | PRK00106, PRK00106, hypothetical protein; Provisio | 6e-06 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 1e-05 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 2e-05 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 2e-05 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 2e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 2e-05 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 2e-05 | |
| COG0610 | 962 | COG0610, COG0610, Type I site-specific restriction | 2e-05 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 2e-05 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 3e-05 | |
| PRK12704 | 520 | PRK12704, PRK12704, phosphodiesterase; Provisional | 4e-05 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 4e-05 | |
| TIGR00618 | 1042 | TIGR00618, sbcc, exonuclease SbcC | 5e-05 | |
| pfam13166 | 713 | pfam13166, AAA_13, AAA domain | 5e-05 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 5e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 5e-05 | |
| PRK04778 | 569 | PRK04778, PRK04778, septation ring formation regul | 5e-05 | |
| TIGR02168 | 1179 | TIGR02168, SMC_prok_B, chromosome segregation prot | 6e-05 | |
| COG4717 | 984 | COG4717, COG4717, Uncharacterized conserved protei | 6e-05 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 6e-05 | |
| PRK04863 | 1486 | PRK04863, mukB, cell division protein MukB; Provis | 7e-05 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 7e-05 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 8e-05 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 8e-05 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 1e-04 | |
| COG2433 | 652 | COG2433, COG2433, Uncharacterized conserved protei | 1e-04 | |
| pfam12128 | 1198 | pfam12128, DUF3584, Protein of unknown function (D | 2e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 2e-04 | |
| PRK00409 | 782 | PRK00409, PRK00409, recombination and DNA strand e | 2e-04 | |
| pfam01496 | 707 | pfam01496, V_ATPase_I, V-type ATPase 116kDa subuni | 2e-04 | |
| pfam06160 | 559 | pfam06160, EzrA, Septation ring formation regulato | 2e-04 | |
| pfam05557 | 722 | pfam05557, MAD, Mitotic checkpoint protein | 2e-04 | |
| pfam05622 | 713 | pfam05622, HOOK, HOOK protein | 2e-04 | |
| COG2268 | 548 | COG2268, COG2268, Uncharacterized protein conserve | 2e-04 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 3e-04 | |
| TIGR03185 | 650 | TIGR03185, DNA_S_dndD, DNA sulfur modification pro | 3e-04 | |
| PRK05771 | 646 | PRK05771, PRK05771, V-type ATP synthase subunit I; | 3e-04 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 3e-04 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 3e-04 | |
| pfam06785 | 401 | pfam06785, UPF0242, Uncharacterized protein family | 3e-04 | |
| COG5281 | 833 | COG5281, COG5281, Phage-related minor tail protein | 3e-04 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 4e-04 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 4e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 5e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 7e-04 | |
| pfam12072 | 201 | pfam12072, DUF3552, Domain of unknown function (DU | 8e-04 | |
| PLN02939 | 977 | PLN02939, PLN02939, transferase, transferring glyc | 9e-04 | |
| TIGR02169 | 1164 | TIGR02169, SMC_prok_A, chromosome segregation prot | 0.001 | |
| COG1269 | 660 | COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase su | 0.001 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.001 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 0.001 | |
| PRK12705 | 508 | PRK12705, PRK12705, hypothetical protein; Provisio | 0.002 | |
| COG5185 | 622 | COG5185, HEC1, Protein involved in chromosome segr | 0.002 | |
| pfam02463 | 1162 | pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | 0.003 | |
| COG4942 | 420 | COG4942, COG4942, Membrane-bound metallopeptidase | 0.003 | |
| TIGR00606 | 1311 | TIGR00606, rad50, rad50 | 0.003 | |
| COG3096 | 1480 | COG3096, MukB, Uncharacterized protein involved in | 0.003 | |
| pfam10174 | 774 | pfam10174, Cast, RIM-binding protein of the cytoma | 0.003 | |
| TIGR03319 | 514 | TIGR03319, RNase_Y, ribonuclease Y | 0.004 | |
| PRK01156 | 895 | PRK01156, PRK01156, chromosome segregation protein | 0.004 | |
| COG4372 | 499 | COG4372, COG4372, Uncharacterized protein conserve | 0.004 | |
| pfam04156 | 186 | pfam04156, IncA, IncA protein | 0.004 |
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 2e-19
Identities = 121/593 (20%), Positives = 256/593 (43%), Gaps = 40/593 (6%)
Query: 101 LEVEEKFHAAEAKLAEVNRKSSELEMKLQELESRESVIKRER------LSLVTEREAHEA 154
+ +E+ AE KL LE L+ELE + ++R+ L E E
Sbjct: 168 SKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELEL 227
Query: 155 AFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILKQKERDLEELEKKIDL 214
A L+E K+L+ +E LS L L + + + E E+ +++ + +LEEL ++++
Sbjct: 228 ALL--LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEE 285
Query: 215 SSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEEKLNAR-----ERVEI 269
+L E ++EI E+ + + L + +E E+RL ++EK+ A ER +
Sbjct: 286 LQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETL 345
Query: 270 QKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEISHREEKLERREQA 329
+ L+ A L+ ++E E +L + +EE + L + E E++ +LE ++
Sbjct: 346 LEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKRE 405
Query: 330 LDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKKLELEKQKLIADKESLQILKVEIDQI 389
++ +R++ L + +KE E ++ + +LE ++L +E L+ L+ + ++
Sbjct: 406 IESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL 465
Query: 390 ESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQQELLLKEH---EDLQ 446
E E A+ + ++Q ++L E L Q + + L + +L
Sbjct: 466 ERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELI 525
Query: 447 QDREKFEKEWEV-LDEKRDEINKEQEKIADEKKKLEKLQH----------SAEERLKKEE 495
+ +EK+E E L + + E E++A + + K + +
Sbjct: 526 KVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRIKPLRSLKS 585
Query: 496 CAMRDYVQREIEAIRLDKE---AFEATMRHEQLVLS-EKAKNDRRKMLEEFEMQRMNQEA 551
A ++ + I D + A + +V E+A+ RK+ ++ + + +
Sbjct: 586 DAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYRI--VTLDG 643
Query: 552 ELLNRR------DKMEKELQERTRTFEEKRERVLNDIAHLKEVAEGEIQEIKSERDQLEK 605
+L+ + ++ + R +E E L ++ E E E++ +K+E LE
Sbjct: 644 DLVEPSGSITGGSRNKRSSLAQKRELKELEEE-LAELEAQLEKLEEELKSLKNELRSLED 702
Query: 606 EKHEVKVNREKLQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 658
E++ E+L+ Q +++++ L+ +L E+ + E E E +E+
Sbjct: 703 LLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE 755
|
Length = 1163 |
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like | Back alignment and domain information |
|---|
| >gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC | Back alignment and domain information |
|---|
| >gnl|CDD|221952 pfam13166, AAA_13, AAA domain | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family | Back alignment and domain information |
|---|
| >gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA | Back alignment and domain information |
|---|
| >gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein | Back alignment and domain information |
|---|
| >gnl|CDD|218661 pfam05622, HOOK, HOOK protein | Back alignment and domain information |
|---|
| >gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242) | Back alignment and domain information |
|---|
| >gnl|CDD|227606 COG5281, COG5281, Phage-related minor tail protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552) | Back alignment and domain information |
|---|
| >gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups | Back alignment and domain information |
|---|
| >gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy production and conversion] | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|129694 TIGR00606, rad50, rad50 | Back alignment and domain information |
|---|
| >gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone | Back alignment and domain information |
|---|
| >gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y | Back alignment and domain information |
|---|
| >gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|217933 pfam04156, IncA, IncA protein | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1109 | |||
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.39 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 99.31 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.22 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.99 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.95 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.86 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.86 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.84 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 98.8 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.77 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 98.7 | |
| KOG0161 | 1930 | consensus Myosin class II heavy chain [Cytoskeleto | 98.61 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 98.56 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 98.47 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.37 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.16 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 98.15 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 97.99 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 97.88 | |
| COG1196 | 1163 | Smc Chromosome segregation ATPases [Cell division | 97.82 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 97.8 | |
| PF07888 | 546 | CALCOCO1: Calcium binding and coiled-coil domain ( | 97.64 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 97.45 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 97.41 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 97.0 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 96.99 | |
| PF01576 | 859 | Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu | 96.86 | |
| KOG0250 | 1074 | consensus DNA repair protein RAD18 (SMC family pro | 96.53 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 96.5 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 96.49 | |
| KOG0018 | 1141 | consensus Structural maintenance of chromosome pro | 96.49 | |
| PRK11637 | 428 | AmiB activator; Provisional | 96.48 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 96.45 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 96.1 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 96.04 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 95.94 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 95.87 | |
| PF08317 | 325 | Spc7: Spc7 kinetochore protein; InterPro: IPR01325 | 95.84 | |
| PF00261 | 237 | Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop | 95.58 | |
| PF10174 | 775 | Cast: RIM-binding protein of the cytomatrix active | 95.46 | |
| PRK12704 | 520 | phosphodiesterase; Provisional | 95.37 | |
| KOG0996 | 1293 | consensus Structural maintenance of chromosome pro | 95.28 | |
| TIGR03319 | 514 | YmdA_YtgF conserved hypothetical protein YmdA/YtgF | 95.2 | |
| PRK00106 | 535 | hypothetical protein; Provisional | 95.08 | |
| PF12072 | 201 | DUF3552: Domain of unknown function (DUF3552); Int | 94.8 | |
| KOG1029 | 1118 | consensus Endocytic adaptor protein intersectin [S | 94.75 | |
| PF10146 | 230 | zf-C4H2: Zinc finger-containing protein ; InterPro | 94.72 | |
| KOG4643 | 1195 | consensus Uncharacterized coiled-coil protein [Fun | 94.64 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 94.3 | |
| KOG0933 | 1174 | consensus Structural maintenance of chromosome pro | 94.17 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 94.17 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 93.38 | |
| PF13851 | 201 | GAS: Growth-arrest specific micro-tubule binding | 93.2 | |
| KOG0964 | 1200 | consensus Structural maintenance of chromosome pro | 93.15 | |
| KOG4674 | 1822 | consensus Uncharacterized conserved coiled-coil pr | 93.0 | |
| PRK04863 | 1486 | mukB cell division protein MukB; Provisional | 92.05 | |
| PF09731 | 582 | Mitofilin: Mitochondrial inner membrane protein; I | 91.56 | |
| PF12072 | 201 | DUF3552: Domain of unknown function (DUF3552); Int | 90.56 | |
| PRK12705 | 508 | hypothetical protein; Provisional | 90.55 | |
| KOG0977 | 546 | consensus Nuclear envelope protein lamin, intermed | 90.42 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 90.23 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 89.96 | |
| TIGR03185 | 650 | DNA_S_dndD DNA sulfur modification protein DndD. T | 88.95 | |
| PF05483 | 786 | SCP-1: Synaptonemal complex protein 1 (SCP-1); Int | 88.5 | |
| COG1340 | 294 | Uncharacterized archaeal coiled-coil protein [Func | 88.3 | |
| PF05557 | 722 | MAD: Mitotic checkpoint protein; InterPro: IPR0086 | 86.87 | |
| KOG0612 | 1317 | consensus Rho-associated, coiled-coil containing p | 86.61 | |
| smart00787 | 312 | Spc7 Spc7 kinetochore protein. This domain is foun | 86.31 | |
| PF09755 | 310 | DUF2046: Uncharacterized conserved protein H4 (DUF | 84.56 | |
| PF00038 | 312 | Filament: Intermediate filament protein; InterPro: | 83.82 | |
| PF09726 | 697 | Macoilin: Transmembrane protein; InterPro: IPR0191 | 83.14 | |
| PF13863 | 126 | DUF4200: Domain of unknown function (DUF4200) | 81.87 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 81.56 | |
| PRK09039 | 343 | hypothetical protein; Validated | 81.2 | |
| PF12718 | 143 | Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 | 80.99 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 80.93 |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-06 Score=106.38 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 001278 417 LLRLQSQLKQQIETYRHQQELL 438 (1109)
Q Consensus 417 ~lrLqseLKeEId~~R~Qke~L 438 (1109)
|-.+..+|+++|...|.+...|
T Consensus 618 l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 618 LAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335555555555555554
|
|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril | Back alignment and domain information |
|---|
| >KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK11637 AmiB activator; Provisional | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] | Back alignment and domain information |
|---|
| >PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] | Back alignment and domain information |
|---|
| >PRK12704 phosphodiesterase; Provisional | Back alignment and domain information |
|---|
| >KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF | Back alignment and domain information |
|---|
| >PRK00106 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
| >PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
| >PF13851 GAS: Growth-arrest specific micro-tubule binding | Back alignment and domain information |
|---|
| >KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK04863 mukB cell division protein MukB; Provisional | Back alignment and domain information |
|---|
| >PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology | Back alignment and domain information |
|---|
| >PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
| >PRK12705 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD | Back alignment and domain information |
|---|
| >PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex | Back alignment and domain information |
|---|
| >COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] | Back alignment and domain information |
|---|
| >PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins | Back alignment and domain information |
|---|
| >KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >smart00787 Spc7 Spc7 kinetochore protein | Back alignment and domain information |
|---|
| >PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain | Back alignment and domain information |
|---|
| >PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope | Back alignment and domain information |
|---|
| >PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes | Back alignment and domain information |
|---|
| >PF13863 DUF4200: Domain of unknown function (DUF4200) | Back alignment and domain information |
|---|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
| >PRK09039 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells | Back alignment and domain information |
|---|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 1e-22
Identities = 61/358 (17%), Positives = 146/358 (40%), Gaps = 9/358 (2%)
Query: 140 RERLSLVTEREAHEAAFYKQREDLREWEKKLQIGDERLSELRRTLNQREVKANENERILK 199
R +++ + E+++Q DE L + + E + E E+
Sbjct: 829 RSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHT 888
Query: 200 QKERDLEELEKKIDLSSSKLKEREDEINSRLAELVVKEREADCLRSTVEMKEKRLLTIEE 259
Q + L++K+ + E E+ A+ E + + +E +E+R ++
Sbjct: 889 QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA 948
Query: 260 KLNA--RERVEIQKLLDDQRAILDAKQQEFELELEEKRKSIEEEMRSKISALDQQEFEIS 317
+ ++ +++++ L+++ A K Q ++ + K K +E+++ ++ E
Sbjct: 949 EKKKMQQQMLDLEEQLEEEEAAR-QKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERK 1007
Query: 318 HREEKLERREQALDKKSDRVKEKENDLAARLKSVKEREKFVKAEEKK---LELEKQKLIA 374
EE++ L ++ ++ K + E E +K EEK LE K+KL
Sbjct: 1008 LLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Query: 375 DKESLQILKVEIDQIESENAQQELQIQEECQKLKINEEEKSELLRLQSQLKQQIETYRHQ 434
+ L +I +++++ A+ + Q+ ++ ++L+ + ++ ++I
Sbjct: 1068 ESSDLH---EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESH 1124
Query: 435 QELLLKEHEDLQQDREKFEKEWEVLDEKRDEINKEQEKIADEKKKLEKLQHSAEERLK 492
L ++ E + R K EK+ L E+ + + E E D ++L+ S +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* Length = 592 | Back alignment and structure |
|---|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430 | Back alignment and structure |
|---|
| >2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* Length = 1038 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
| >1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A Length = 596 | Back alignment and structure |
|---|
| >1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} Length = 683 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1109 | |||
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.92 | |
| 1i84_S | 1184 | Smooth muscle myosin heavy chain; muscle protein, | 97.77 | |
| 1c1g_A | 284 | Tropomyosin; contractIle protein; 7.00A {Sus scrof | 97.59 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 94.59 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 94.24 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 93.45 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 92.2 | |
| 3na7_A | 256 | HP0958; flagellar biogenesis, flagellum export, C4 | 91.71 | |
| 2dfs_A | 1080 | Myosin-5A; myosin-V, inhibited state, cryoelectron | 91.02 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 85.81 | |
| 2efr_A | 155 | General control protein GCN4 and tropomyosin 1 Al; | 85.01 | |
| 2b9c_A | 147 | Striated-muscle alpha tropomyosin; alpha-helix, co | 81.24 |
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
Probab=97.92 E-value=2.3e-05 Score=97.60 Aligned_cols=42 Identities=12% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHhhhhhcHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 001278 617 LQEQQLGMRKDIDELDILCRRLYGDREQFKREKERFLEFVEK 658 (1109)
Q Consensus 617 le~q~~em~kdIdeL~~ls~KLk~qRE~~~~eRe~fl~~vEk 658 (1109)
++.+...+...+++......+|..++..+..+...+...|+.
T Consensus 1121 Le~eie~L~eeLee~~~~~~~le~q~~~L~~ele~L~~~Iee 1162 (1184)
T 1i84_S 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162 (1184)
T ss_dssp ------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444444444444443333333
|
| >1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A | Back alignment and structure |
|---|
| >1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
| >3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} | Back alignment and structure |
|---|
| >2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} | Back alignment and structure |
|---|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
| >2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A | Back alignment and structure |
|---|
| >2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00