Citrus Sinensis ID: 001311

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100--
Protein Sequence
MRKSSKKLFTSKHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHcccccccEEHHHHHHHHccccHHHHHHHcccccccccccccEEEEEEEHHHHHHHHHcccccHHHHHEEcccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHccccccHHcccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccEEEcEEEEEEccccccccccccccccccccccccEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEcccEEEEcccccEEEEEEcccccEEEEEEEcccccEEEEEcccccEEEccccccccEEEEEccccccccEEEEEEccccEEEEEcccccccEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEcccccEEEEEEccccccEEEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccEEEEEccccccccccEEEEEEcccccEEEEEEcccEEEEEEEcccccccccccccccccEEEEcccccEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccccccEEEEcccccccccccccEEEEcccccEEEEEEcccEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccccccccccEEEEEccccccEEEEEEccccEEEEccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccEEcHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHHccccccccccccEEEEEEccccccEEEEcccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEEEEEccccccccHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEcccccEEEEcccccEEEEEEccccccHHHHHHHccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEcccccEEEEccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEccccccccccEEEEccccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEcccccccc
Coil and Loop (DISEMBL)
mrksskklftskhflleqesgfffnmkyfedevhngnwdDVEKYLSGftkvddnrysmKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENfreneqlskygdtksARSIMLVELKKLieanplfrdklqfpnlknsRLRTLINQSLNWQHqlcknprpnpdiktlfvdhtcgqpngarapspannpllgslpkagvfpplgahgpfqptpapvptplagwmsnpptvthpavsggaiglgspsipaaalkhprtpptnpsvdypsgdsdhlskrtrpigisdeinlpvnvlpvsftghshshshsqafstpedlpktvtrtlnqgsspmsmdfhpVQQTLLLVGtnvgdiglwevgsrerlvlrnfkvwdlgacsmplqaalvkdpgvsvnrviwspdgslfgvAYSRHIVQIYSyhggdevrQHLEidahvggvndiafshpnkqlcvitcgddktiKVWDATngakqyifegheapvysvcphhkeNIQFIFSTALDGKIKAWLYDnlgsrvdyeapgrwcttmaysadgtrtyqgfrkrslgvvqfdttknrflaagddfsikfwDMDSVQLLTSIdadgglpasprirfnkdgclLAVSTNDNGIKILATSDGIRLLRTFENLAydasrtsenskptisPISAAAAAAATSAGLADRAAsmvsipgmngdvrsladvkpriteesndkSKVWKLtelsepnqcrslrlpenlrATKISRLIFTNSGNAILALASNAIHLLWKWQrternssgkatasvapqlwqppsgimmtndvtdsnpeeavpcfalskndsyvmsasggkislfnmmtfktmatfmppppaatflafhpqdnniiaigmddssiqIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVssgadsqlcvwssdgwekqknrflqiptgrtptaqsdtrvqfhQDQIHFLVVHETQLAIFETTKLEcvkqwvpressapithatfscdsqLVYACFLDATVCVFSAANLKLrcrinpsaylpagvsssnvhplviaahpqepnefalglsdggvhvfeplesegkwgvpppvdngstssmpatppvggsgsdqaqr
Flexible Loop (DISEMBL)
mrksskklftskhflleqesGFFFNMKYFEDEVHNGNWDDVEKYLSGftkvddnrysMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENeqlskygdtksaRSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSqafstpedlpkTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGsrvdyeapgrwCTTMAYSADGTRTYQGFRKrslgvvqfdttKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYdasrtsenskptiSPISAAAAAAATSAGLADRAASMvsipgmngdvrsladvkpriteesndkskvwkltelsepnqcrslrlpeNLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNssgkatasvapqlwqppsgIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGstssmpatppvggsgsdqaqr
Low Complexity Region (SEG)
MRKSSKKLFTSKHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGpfqptpapvptpLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGhshshshsQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPIsaaaaaaatsagladraasMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNmmtfktmatfmppppaatflafHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Disordered region (IsUnstruct)
********FTSKHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPR*NPDIKTLFVDHTC***************************************************************************************************************EINLPVNVLPVSF*************************************FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY********************************************************************************LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR**************************************VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP**********TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP***NEFALGLSDGGVHVFE**************************************
Disordered Region (DISOPRED)
*************FLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPK*GVFP*****G*F*P***********************************************PTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGK*******************************
Disordered Region (DISEMBL)
MRKSSKKLFTSKHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFT****************DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA**********ISPIS**************RAASMVSIPGMNGDVRSLADVKPRI********KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT************APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSM****************
Disordered Region (DISPRO)
****SKKLFTSKHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGG********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKSSKKLFTSKHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1102	2.2.26 [Sep-21-2011]
Q94AI7	1131	Protein TOPLESS OS=Arabid	yes	no	0.978	0.953	0.825	0.0
Q0WV90	1120	Topless-related protein 1	no	no	0.968	0.952	0.810	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.975	0.947	0.676	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.939	0.915	0.610	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.941	0.935	0.589	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.245	0.199	0.292	3e-18
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.423	0.306	0.224	9e-15
Q54KL5	335	WD repeat-containing prot	yes	no	0.187	0.617	0.254	5e-13
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.430	0.376	0.209	2e-11
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.390	0.255	0.219	2e-11

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1909 bits (4946), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 919/1113 (82%), Positives = 1000/1113 (89%), Gaps = 35/1113 (3%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR KAV+ILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct: 88   HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFP L+NSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+CG P
Sbjct: 148  KKLIEANPLFRDKLQFPTLRNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGPP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSP NNPLLG +PKAG FPPLGAHGPFQPT +PVPTPLAGWMS+P +V HPAVS 
Sbjct: 208  NGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQPTASPVPTPLAGWMSSPSSVPHPAVSA 267

Query: 256  GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 315
            GAI LG PSIPAA LKHPRTPPTN S+DYPS DS+H+SKRTRP+GISDE+NL VN+LP+S
Sbjct: 268  GAIALGGPSIPAA-LKHPRTPPTNASLDYPSADSEHVSKRTRPMGISDEVNLGVNMLPMS 326

Query: 316  FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375
            F+G +H HS   AF  P+DLPKTV RTL+QGSSPMSMDFHP++QTLLLVGTNVGDIGLWE
Sbjct: 327  FSGQAHGHS--PAFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWE 384

Query: 376  VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
            VGSRERLV + FKVWDL  CSMPLQAALVK+P VSVNRVIWSPDGSLFGVAYSRHIVQ+Y
Sbjct: 385  VGSRERLVQKTFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLY 444

Query: 436  SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495
            SYHGG+++RQHLEIDAHVGGVNDI+FS PNKQLCVITCGDDKTIKVWDA  G K++ FEG
Sbjct: 445  SYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEG 504

Query: 496  HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555
            HEAPVYSVCPH+KENIQFIFSTALDGKIKAWLYDN+GSRVDY+APGRWCTTMAYSADGTR
Sbjct: 505  HEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTR 564

Query: 556  --------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                                      TYQGF KRSLGVVQFDTTKNR+LAAGDDFSIKFW
Sbjct: 565  LFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFW 624

Query: 590  DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 649
            DMD+VQLLT+ID DGGL ASPRIRFNK+G LLAVS N+N IKI+A SDG+RLL TFEN+ 
Sbjct: 625  DMDAVQLLTAIDGDGGLQASPRIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENI- 683

Query: 650  YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 709
                 +SE+SKP I+ I+AAAAAAATSAG ADR+A++VSI GMNGD R++ DVKP ITEE
Sbjct: 684  -----SSESSKPAINSIAAAAAAAATSAGHADRSANVVSIQGMNGDSRNMVDVKPVITEE 738

Query: 710  SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 769
            SNDKSK+WKLTE+SEP+QCRSLRLPENLR  KISRLIFTNSGNAILALASNAIHLLWKWQ
Sbjct: 739  SNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISRLIFTNSGNAILALASNAIHLLWKWQ 798

Query: 770  RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKI 829
            R ERN++GKATAS+ PQ WQP SGI+MTNDV ++NPEEAVPCFALSKNDSYVMSASGGKI
Sbjct: 799  RNERNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKI 858

Query: 830  SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 889
            SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGH
Sbjct: 859  SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGH 918

Query: 890  SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 949
            SKRITGLAFS+ LNVLVSSGAD+QLCVW++DGWEKQ+++ L +P GR  +A SDTRVQFH
Sbjct: 919  SKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFH 978

Query: 950  QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1009
            QDQ HFLVVHETQLAI+ETTKLEC+KQW  RES APITHATFSCDSQLVYA F+DATVCV
Sbjct: 979  QDQAHFLVVHETQLAIYETTKLECMKQWAVRESLAPITHATFSCDSQLVYASFMDATVCV 1038

Query: 1010 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069
            FS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIAAHPQEPN FA+GLSDGGVH+FEPLESE
Sbjct: 1039 FSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESE 1098

Query: 1070 GKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            GKWGV PP +NGS S  P  P VG S SDQ QR
Sbjct: 1099 GKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1131

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1893 bits (4903), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 902/1113 (81%), Positives = 990/1113 (88%), Gaps = 46/1113 (4%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALD+
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR KAV+ILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct: 88   HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFP L+ SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+C  P
Sbjct: 148  KKLIEANPLFRDKLQFPTLRTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCRLP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            N ARAPSP NNPLLGSLPKA  FPPLGAHGPFQPTP+PVPTPLAGWMS+P +V HPAVSG
Sbjct: 208  NDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQPTPSPVPTPLAGWMSSPSSVPHPAVSG 267

Query: 256  GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 315
            G I LG+PSI  AALKHPRTPP+N +VDYPSGDSDH+SKRTRP+GISDE++L VN+LP++
Sbjct: 268  GPIALGAPSI-QAALKHPRTPPSNSAVDYPSGDSDHVSKRTRPMGISDEVSLGVNMLPMT 326

Query: 316  FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375
            F G +H H+  Q F  P+DLPKTV RTL+QGSSPMSMDFHP++QTLLLVGTNVGDIGLWE
Sbjct: 327  FPGQAHGHN--QTFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWE 384

Query: 376  VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
            VGSRERLV + FKVWDL  CSMPLQAALVK+P VSVNRVIWSPDGSLFGVAYSRHIVQ+Y
Sbjct: 385  VGSRERLVQKTFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLY 444

Query: 436  SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495
            SYHGG+++RQHLEIDAHVGGVNDIAFS PNKQLCV TCGDDKTIKVWDA  G K+Y FEG
Sbjct: 445  SYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEG 504

Query: 496  HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555
            HEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDN+GSRVDYEAPGRWCTTMAYSADGTR
Sbjct: 505  HEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTR 564

Query: 556  --------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                                      TYQGF KRSLGVVQFDTTKNR+LAAGDDFSIKFW
Sbjct: 565  LFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFW 624

Query: 590  DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 649
            DMD++QLLT+IDADGGL ASPRIRFNK+G LLAVS NDN IK++A SDG+RLL T ENL 
Sbjct: 625  DMDTIQLLTAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENL- 683

Query: 650  YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 709
                 +SE+SKP I+ I            + +R AS+VSIPGMNGD R++ DVKP ITEE
Sbjct: 684  -----SSESSKPAINSIP-----------MVERPASVVSIPGMNGDSRNMVDVKPVITEE 727

Query: 710  SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 769
            SNDKSKVWKLTE+ EP+QCRSLRLPEN+R TKISRLIFTNSGNAILALASNAIHLLWKWQ
Sbjct: 728  SNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQ 787

Query: 770  RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKI 829
            R +RN++GKATAS+ PQ WQP SGI+MTNDV ++NPEEAVPCFALSKNDSYVMSASGGKI
Sbjct: 788  RNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKI 847

Query: 830  SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 889
            SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGH
Sbjct: 848  SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGH 907

Query: 890  SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 949
            SKRITGLAFS+ LNVLVSSGAD+QLCVW++DGWEKQK++ LQIP GR+ ++ SDTRVQFH
Sbjct: 908  SKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFH 967

Query: 950  QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1009
            QDQ+HFLVVHETQLAI+ETTKLEC+KQW  RES+APITHATFSCDSQL+Y  F+DAT+CV
Sbjct: 968  QDQVHFLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIYTSFMDATICV 1027

Query: 1010 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069
            FS+ANL+LRCR+NPSAYLPA +S+SNVHPLVIAAHPQE N FA+GLSDGGVH+FEPLESE
Sbjct: 1028 FSSANLRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESE 1087

Query: 1070 GKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            GKWGV PP +NGS S++ ATP VG S SDQ QR
Sbjct: 1088 GKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1563 bits (4046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 758/1120 (67%), Positives = 886/1120 (79%), Gaps = 45/1120 (4%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LE+ESGFFFNM+YFED V  G WDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
             D AKAV+ILVK+LKVFSTFNEELFKEIT LLTL NFRENEQLSKYGDTKSAR IML EL
Sbjct: 88   KDHAKAVDILVKELKVFSTFNEELFKEITMLLTLTNFRENEQLSKYGDTKSARGIMLGEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFP+LKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCG P
Sbjct: 148  KKLIEANPLFRDKLQFPSLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGHP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGA  PSP  N L+GS+PK G FPPLGAHGPFQPTPAP+ T LAGWM NP +V HP VS 
Sbjct: 208  NGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQPTPAPLTTSLAGWMPNP-SVQHPTVSA 266

Query: 256  GAIGLGSPSIPAAALKH--PRTPPTNP-SVDYPSGDSDHLSKRTRPIGISDEIN-LPVNV 311
            G IGLG+P+   + LK   PR+PPTN  S+DY + DS+ + KR RP GISD +N LPVNV
Sbjct: 267  GPIGLGAPNSAVSMLKRERPRSPPTNSLSMDYQTADSESVLKRPRPFGISDGVNNLPVNV 326

Query: 312  LPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDI 371
            LPV++ G SH+H+    +ST +DLPK V+R L+QGS+  SMDFHPVQQT+LLVGTN+GDI
Sbjct: 327  LPVTYPGQSHAHA---TYST-DDLPKNVSRILSQGSAIKSMDFHPVQQTMLLVGTNLGDI 382

Query: 372  GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 431
             +WEVGSRE+LV R+FKVWDL  C++ LQA+L  +   +VNRV+WSPDG L GVAYS+HI
Sbjct: 383  AIWEVGSREKLVSRSFKVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHI 442

Query: 432  VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 491
            V IYSYHGG+++R HLEIDAH G VND+AFS PN+QLCV+TCG+DKTIKVWDA  G K +
Sbjct: 443  VHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLH 502

Query: 492  IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 551
             FEGHEAPVYSVCPH KENIQFIFSTA+DGKIKAWLYDN+GSRVDY+APGR CT+MAY A
Sbjct: 503  TFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCA 562

Query: 552  DGTR--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 585
            DGTR                          TY G  KRS+GVVQFDT KN+FL AGD+F 
Sbjct: 563  DGTRLFSCGTSKEGESFIVEWNESEGAVKRTYLGLGKRSVGVVQFDTMKNKFLVAGDEFQ 622

Query: 586  IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
            +KFWDMDSV LL+S  A+GGLP+SP +R NK+G LLAVST DNGIKILA ++G R+L + 
Sbjct: 623  VKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSM 682

Query: 646  ENLAYDASRTSENS---KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV 702
             N   D+SR    S    P +       ++   S  + +R+  + S+ G+NGD RSL DV
Sbjct: 683  ANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDV 742

Query: 703  KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI 762
            KPRI +++ +KSK WKLTE+SE +Q R+LRLP+ L   ++ +LI+TNSG AILALA NA 
Sbjct: 743  KPRIADDA-EKSKTWKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAA 801

Query: 763  HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM 822
            H LWKWQ++ERN  GKA ++V PQLWQP SG++MTND  + N E+ VPCFALSKNDSYVM
Sbjct: 802  HKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTNDTREGNKEDVVPCFALSKNDSYVM 861

Query: 823  SASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 882
            SASGGKISLFNMMTFKTM TFM PPPAAT LAFHPQDNNIIAIGMDDSSIQIYNVRVDEV
Sbjct: 862  SASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV 921

Query: 883  KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 942
            KSKLKGH KR+TGLAFS+ LNVLVSSGADSQLCVWS DGWEKQ ++ +QIP+G +P   +
Sbjct: 922  KSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLA 981

Query: 943  DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1002
             TRVQFHQDQIH LVVH +QLAI+E  KLE +KQW+P+ESS  +T A +SCDSQ +YA F
Sbjct: 982  HTRVQFHQDQIHVLVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAF 1041

Query: 1003 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1062
             D +V + +A  L+L+CRI P++YLP+   SS V+P  +AAHP EPN+FA+GL+DGGVHV
Sbjct: 1042 DDGSVSILTATTLQLKCRIGPNSYLPSN-PSSRVYPATVAAHPSEPNQFAVGLTDGGVHV 1100

Query: 1063 FEPLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
             EP   EGKWG+  P +NG+  S+ + P     GSDQ  R
Sbjct: 1101 IEPPGPEGKWGISAPPENGAGPSVSSAP-----GSDQQPR 1135

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score = 1332 bits (3447), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 669/1096 (61%), Positives = 817/1096 (74%), Gaps = 61/1096 (5%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFN+KYFE++   G WD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALD+
Sbjct: 28   LEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            +DRAKAVEIL KDLKVF+TFNEEL+KEITQLLTLENFRENEQLSKYGDTKSARSIM  EL
Sbjct: 88   NDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSIMYTEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFR+KL FP+ K SRLRTLINQSLNWQHQLCKNPRPNPDIKTLF+DH+C   
Sbjct: 148  KKLIEANPLFREKLAFPSFKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFLDHSCSPS 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAH-GPFQP--TPAPVPTPLAGWMSNP-PTVTHP 251
            NGARA +P N P + ++ +   F PLG H GPFQ    PAP    LAGWM+NP P+ + P
Sbjct: 208  NGARALTPVNLP-VAAVARPSNFVPLGVHGGPFQSNPAPAPNANALAGWMANPNPSSSVP 266

Query: 252  AVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV-DYPSGDSDHLSKRTRPIGISDEINLP 308
              SG       P  P+    LKHPR P  +  + DY S D + L KR R    S+E+  P
Sbjct: 267  --SGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYP 324

Query: 309  VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV 368
                         +HSH  A  + +DLP+ V  T+ QGS  +SMDFHP   TLL VG + 
Sbjct: 325  -------------AHSHPPA--SLDDLPRNVVSTIRQGSVVISMDFHPSHHTLLAVGCSS 369

Query: 369  GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS 428
            G++ LWEVGSRE++V   FK+W++ ACS+  Q ++VK+P +SV RV WSPDG+L GV+++
Sbjct: 370  GEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPDGNLLGVSFT 429

Query: 429  RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 488
            +H++ +Y+Y G D +RQHLEIDAHVG VND+AF+HPNKQ+CV+TCGDDK IKVWD + G 
Sbjct: 430  KHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLIKVWDLS-GK 487

Query: 489  KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA 548
            K + FEGHEAPVYS+CPH KENIQFIFSTALDGKIKAWLYDN+GSRVDY+APG+WCTTM 
Sbjct: 488  KLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAPGQWCTTML 547

Query: 549  YSADGT--------------------------RTYQGFRKRSLGVVQFDTTKNRFLAAGD 582
            YSADG+                          RTY GFRK+S GVVQFDTT+NRFLA G+
Sbjct: 548  YSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTRNRFLAVGE 607

Query: 583  DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL 642
            D  IKFW+MD+  LLT ++A+GGLP  PR+RFNKDG LLAV+T DNG KILA +DG+R L
Sbjct: 608  DNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILANTDGLRTL 667

Query: 643  RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG-DVRSLAD 701
            R FE  +++AS+ S + K + S ++++ + A       D  +     P  NG +  S   
Sbjct: 668  RAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIPNGIEAMSRTM 727

Query: 702  VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA-TKISRLIFTNSGNAILALASN 760
             KPR   +S DKSK  +LTE+ +P QCR + +P++  + +K++RL++TNSG  +LAL SN
Sbjct: 728  EKPR-NLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNSGVGVLALGSN 786

Query: 761  AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY 820
             +  LWKW R E+N +GKATASV PQ WQP SG++M NDV + NPE +VPC ALSKNDSY
Sbjct: 787  GVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSVPCIALSKNDSY 845

Query: 821  VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD 880
            VMSA GGK+SLFNMMTFK M TFMPPPPA+TFLAFHPQDNNIIAIGM+DSSI IYNVRVD
Sbjct: 846  VMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVD 905

Query: 881  EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA 940
            EVK+KLKGH K ITGLAFS ALN+LVSSGAD+QL  W++D WEK+K+  +Q+P G+ P  
Sbjct: 906  EVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAIQLPPGKAPVG 965

Query: 941  QSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVY 999
              DTRVQFH DQI  LV HETQLAI++ +K+EC+ +WVP+E+ S+PIT A++SC+SQLVY
Sbjct: 966  --DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASYSCNSQLVY 1023

Query: 1000 ACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSSNVHPLVIAAHPQEPNEFALGLSDG 1058
            A F D  + VF A +L+LRCRI PSAY+P    +S+ + P VI AHPQEPN+ A+GLSDG
Sbjct: 1024 ASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEPNQLAVGLSDG 1083

Query: 1059 GVHVFEPLESEGKWGV 1074
             V V EP E   +WGV
Sbjct: 1084 SVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score = 1289 bits (3335), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1105 (58%), Positives = 801/1105 (72%), Gaps = 68/1105 (6%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LE+ESGFFFN KYF+++V  G WDDVE YLSGFTKVDDNRYSMKIFFEIRKQKYLEALD+
Sbjct: 28   LEKESGFFFNTKYFDEKVLAGEWDDVETYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
             ++AKAVEILV+DL+VFSTFNEEL+KEITQLLTL+NFRENEQLSKYGDTK+AR IML EL
Sbjct: 88   QEKAKAVEILVQDLRVFSTFNEELYKEITQLLTLQNFRENEQLSKYGDTKTARGIMLGEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKL FP L++SRLRTLINQSLNWQHQLCKNPRPNPDIKTLF DHTC  P
Sbjct: 148  KKLIEANPLFRDKLMFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTLP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAH-GPFQPTPAPVPTPLAGWM--SNPPTVTHPA 252
            NG  APS  N P+  +L K   +P LG H        A     LA WM  ++  +    A
Sbjct: 208  NGPLAPSAVNQPVT-TLTKPAAYPSLGPHVPFPPGPAAANAGALASWMAAASGASAVQAA 266

Query: 253  VSGGAIGLGSPSIPAAALKHPRTPPTNPS-VDYPSGDSDHLSKRTRPIGISDEINLPVNV 311
            V   A+ +  P    + LK PRTPP  P  VDY + D + L KR RP    +E+  P   
Sbjct: 267  VVTPAL-MPQPQNQMSILKRPRTPPATPGIVDYQNPDHE-LMKRLRPAPSVEEVTYPA-- 322

Query: 312  LPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDI 371
                           QA  + EDLP      L+QGS+  SM+F+P+Q TLLLVG+  G+I
Sbjct: 323  ------------PRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQNTLLLVGSATGEI 370

Query: 372  GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI 431
             LWE+ +RERLV R FK+WD+  CS   QA + K+  +SV RV WSPDG+  GVA+++H+
Sbjct: 371  TLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAWSPDGNFIGVAFTKHL 430

Query: 432  VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY 491
            +Q+Y++ G +++RQH EIDAHVG VND+AF++PN+QLCVITCGDDK IKVWD + G K +
Sbjct: 431  IQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIKVWDVS-GRKHF 489

Query: 492  IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 551
             FEGH+APVYS+CPH+KENIQFIFSTA+DGKIKAWLYDNLGSRVDY+APG+WCT M YSA
Sbjct: 490  TFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPGKWCTRMLYSA 549

Query: 552  DGT--------------------------RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 585
            DGT                          RTY+ F+K+  GVVQFDT+KN FLA G+D  
Sbjct: 550  DGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSKNHFLAVGEDGQ 609

Query: 586  IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
            IKFWDM+++ +LTS DA+GGLPA P +RFNKDG LLAV+T DNG KILA   G R LR  
Sbjct: 610  IKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILANPAGFRSLRAM 669

Query: 646  ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 705
            E  A +  RT  + K      +   A  A+     +R + +     +NG    +   K R
Sbjct: 670  ETPASETMRTPVDFK------AVPGAPVASVNCKVERGSPVRHSQMLNG----VDPSKSR 719

Query: 706  ITEESNDKSKVWKLTELSEPNQCRSLRLPENL-RATKISRLIFTNSGNAILALASNAIHL 764
            I ++S DK K W+L E+ +P+QC    LP+    +TK+ +L++TNSG  ILAL SN I  
Sbjct: 720  I-DDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAGILALGSNGIQR 778

Query: 765  LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 824
            LWKW   E+N SGKATA+V PQ WQP SG++MTNDV+  N E A PC ALSKNDSYVMSA
Sbjct: 779  LWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIALSKNDSYVMSA 838

Query: 825  SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884
            +GGK+SLFNMMTFK M TFMPPPPA+TFLAFHPQDNN+IAIGM+DS+I IYNVRVDEVKS
Sbjct: 839  AGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIHIYNVRVDEVKS 898

Query: 885  KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 944
            KLKGH KRITGLAFS ALN+LVSSGAD+Q+C WS D WEK+K+  +Q+P G+   A  DT
Sbjct: 899  KLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMPAGK--AANGDT 956

Query: 945  RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFL 1003
            RVQFH DQ+  LVVHETQLA+F+ +K+EC++QW+P++S SAPI+ A ++C+SQL+Y  F 
Sbjct: 957  RVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTTFR 1016

Query: 1004 DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1063
            D  + VF A +L+LRCRI+PSAYLP G  +  + PLV+AAHPQ+PN+FA+GL+DG V + 
Sbjct: 1017 DGNIGVFDADSLRLRCRISPSAYLPQG--NQGLSPLVVAAHPQDPNQFAVGLNDGSVKMM 1074

Query: 1064 EPLESEGKWGVPPP---VDNGSTSS 1085
            EP E EGKWG+ PP   +++ ST+S
Sbjct: 1075 EPTEGEGKWGMIPPSEAINSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 135/325 (41%), Gaps = 55/325 (16%)

Query: 338  TVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL--GA 394
            T T+TL   GSS +S+ F P  Q    V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 395  CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG 454
            C+  L+       G SV  V +SPDG           ++I+    G    Q LE   H G
Sbjct: 1001 CTQTLEG-----HGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASG-TCTQTLE--GHGG 1052

Query: 455  GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 514
             V  + FS P+ Q  V +  DD TIK+WDA +G      EGH   V+SV      + Q +
Sbjct: 1053 WVQSVVFS-PDGQR-VASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVA--FSPDGQRV 1108

Query: 515  FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV------- 567
             S ++DG IK W   +       E  G W  ++A+S DG R   G    ++ +       
Sbjct: 1109 ASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGT 1168

Query: 568  --------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR 613
                          V F     R  +   D +IK WD  S     +++  GG   S  + 
Sbjct: 1169 CTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHGGWVQS--VA 1226

Query: 614  FNKDGCLLAVSTNDNGIKILATSDG 638
            F+ DG  +A  ++DN IKI  T+ G
Sbjct: 1227 FSPDGQRVASGSSDNTIKIWDTASG 1251

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 119/531 (22%), Positives = 215/531 (40%), Gaps = 64/531 (12%)

Query: 410  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            SV  V +SPDG LF    S  IV+ +    G E+   L    H   VN + FS   K L 
Sbjct: 866  SVLTVAFSPDGKLFATGDSGGIVRFWEAATGKEL---LTCKGHNSWVNSVGFSQDGKMLA 922

Query: 470  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
              +  DD+T+++WD ++G     F+GH + V SV      N   + S + D  ++ W   
Sbjct: 923  --SGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVV--FSPNSLMLASGSSDQTVRLWDIS 978

Query: 530  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKF 588
            +      ++    W  ++A++ DG+                       LA G  D +++ 
Sbjct: 979  SGECLYIFQGHTGWVYSVAFNLDGS----------------------MLATGSGDQTVRL 1016

Query: 589  WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 648
            WD+ S Q        G       + F+ DG +LA  ++D  +++   S G   L T +  
Sbjct: 1017 WDISSSQCFYIFQ--GHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSG-NCLYTLQG- 1072

Query: 649  AYDASRTSENSKPTISPISAAAAAAATS--AGLADRAAS--MVSIPGMNGDVRSLADVKP 704
                  TS       SP  A  A+        L D ++   + ++ G    VR L     
Sbjct: 1073 -----HTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPN 1127

Query: 705  RITEESNDKSKVWKLTELSEPNQCRSLRLPEN-LRATKIS---RLIFTNSGNAILAL--- 757
             +T  +    ++ +L ++S      +L+   N + A   S     + + SG+  + L   
Sbjct: 1128 GVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDI 1187

Query: 758  -ASNAIHLLW---KW-QRTERNSSGKATASVAP----QLWQPPSGIMMTNDVTDSNPEEA 808
             +S  +++L     W      N  G   AS +     +LW+  S   +    T       
Sbjct: 1188 SSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCL---CTFQGHTSW 1244

Query: 809  VPCFALSKNDSYVMSASGGK-ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 867
            V     + + S + S S  K + L+++ + K + TF         +AF+P D +++A G 
Sbjct: 1245 VNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNP-DGSMLASGS 1303

Query: 868  DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
             D +++++ +   +     +GH+  ++ + FS    +L S   D  + +WS
Sbjct: 1304 GDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWS 1354

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q54KL5|WDR5_DICDI WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 29/236 (12%)

Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           S++ V +SPDG     A +   ++I+  + G   R    ++ H  G++DIA+S  +K +C
Sbjct: 48  SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104

Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
             +  DDKTIK+WD  +G      +GH+  V+ V  + + N+  I S + D  ++ W   
Sbjct: 105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159

Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
           N G           CT M  +     T           V F+      ++   D +++ W
Sbjct: 160 NTGE----------CTKMISAHSDPVT----------GVHFNRDGTLVVSGSYDGTVRIW 199

Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  + QLL +I  + G   S  ++F+ +G  +   T DN +++ + ++  + L+T+
Sbjct: 200 DTTTGQLLNTISTEDGKEVS-FVKFSPNGKFVLAGTLDNTLRLWSYNNNKKCLKTY 254

Dictyostelium discoideum (taxid: 44689)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 114/543 (20%), Positives = 205/543 (37%), Gaps = 69/543 (12%)

Query: 417  SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD 476
            SP+G L     +   V+++    G  +   L    H   V  + FS P+ ++ + +CG D
Sbjct: 651  SPEGQLLATCDTDCHVRVWEVKSGKLL---LICRGHSNWVRFVVFS-PDGEI-LASCGAD 705

Query: 477  KTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD 536
            + +K+W   +G       GHE  V+SV  H   + + + S + D  IK W   +      
Sbjct: 706  ENVKLWSVRDGVCIKTLTGHEHEVFSVAFH--PDGETLASASGDKTIKLWDIQDGTCLQT 763

Query: 537  YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL 596
                  W   +A+S DG                     N   ++  D +IK WD+   + 
Sbjct: 764  LTGHTDWVRCVAFSPDG---------------------NTLASSAADHTIKLWDVSQGKC 802

Query: 597  LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS 656
            L ++ +  G   S  + F+ DG  LA  + D  IKI     G   L+T+  + +  S  S
Sbjct: 803  LRTLKSHTGWVRS--VAFSADGQTLASGSGDRTIKIWNYHTG-ECLKTY--IGHTNSVYS 857

Query: 657  ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA---DVKPRITEESNDK 713
                P    + + +               + ++ G   +V S+A   D +       +  
Sbjct: 858  IAYSPDSKILVSGSGDRTIKLWDCQTHICIKTLHGHTNEVCSVAFSPDGQTLACVSLDQS 917

Query: 714  SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL-LWKWQRTE 772
             ++W         QC    L      T  +  +  +    ILA  SN   + LW WQ  +
Sbjct: 918  VRLWN----CRTGQC----LKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQTGK 969

Query: 773  RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE----EAVPCFA-LSKNDSYVMS---- 823
              SS +        +   P    + +  TDS+          CF  L ++  +V +    
Sbjct: 970  YISSLEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTGQCFQILLEHTDWVYAVVFH 1029

Query: 824  ------ASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI 874
                  A+G     + L+N+ T + + T          +A+ P D  ++A    D S+++
Sbjct: 1030 PQGKIIATGSADCTVKLWNISTGQCLKTLSEHSDKILGMAWSP-DGQLLASASADQSVRL 1088

Query: 875  YNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT 934
            ++         L+GHS R+    FS    ++ +   D  + +     W+ Q+ + L+  T
Sbjct: 1089 WDCCTGRCVGILRGHSNRVYSAIFSPNGEIIATCSTDQTVKI-----WDWQQGKCLKTLT 1143

Query: 935  GRT 937
            G T
Sbjct: 1144 GHT 1146

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 111/505 (21%), Positives = 200/505 (39%), Gaps = 75/505 (14%)

Query: 442  EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY 501
            E+++   ++ H  GV  I+ S   +   + +   DKTIK+W + +G       GHE  VY
Sbjct: 1061 EMQERNRLEGHKDGVISISISRDGQ--TIASGSLDKTIKLW-SRDGRLFRTLNGHEDAVY 1117

Query: 502  SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQG 559
            SV      + Q I S   D  IK W                       ++DGT  +T  G
Sbjct: 1118 SVS--FSPDGQTIASGGSDKTIKLW----------------------QTSDGTLLKTITG 1153

Query: 560  FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC 619
              ++++  V F        +A  D SIK WD  S QLL ++   G       +RF+ DG 
Sbjct: 1154 -HEQTVNNVYFSPDGKNLASASSDHSIKLWDTTSGQLLMTLT--GHSAGVITVRFSPDGQ 1210

Query: 620  LLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL 679
             +A  + D  +K+    DG +LL+T     +     S +  P    +++A+A        
Sbjct: 1211 TIAAGSEDKTVKLWHRQDG-KLLKTLN--GHQDWVNSLSFSPDGKTLASASADKTIKLWR 1267

Query: 680  ADRAASMVSIPGMNG---DVRSLADVKPRITEESNDKSKVWK------------------ 718
                  + ++ G N    DV   +D K   +   ++  K+W                   
Sbjct: 1268 IADGKLVKTLKGHNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA 1327

Query: 719  LTELSEPNQCRSLRLPENLRATK---ISRLIFTNSGNAILALASNAIHLLWKWQRTERNS 775
            +  L + N   S  L   +R  +   IS L      + + A++   +H        + + 
Sbjct: 1328 VNFLPDSNIIASASLDNTIRLWQRPLISPLEVLAGNSGVYAVS--FLH--------DGSI 1377

Query: 776  SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK-ISLFNM 834
               A A    QLW    G ++     +    +A+   + +     + SA+  K + ++ +
Sbjct: 1378 IATAGADGNIQLWHSQDGSLLKTLPGN----KAIYGISFTPQGDLIASANADKTVKIWRV 1433

Query: 835  MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 894
               K + T +        + F P D   +A    D++++++NV   + K  LKGH+  + 
Sbjct: 1434 RDGKALKTLIGHDNEVNKVNFSP-DGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVF 1492

Query: 895  GLAFSHALNVLVSSGADSQLCVWSS 919
             ++FS    ++ S+ AD  + +W S
Sbjct: 1493 WVSFSPDGKIIASASADKTIRLWDS 1517

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1102
24461849	1127	CTV.2 [Citrus trifoliata]	0.974	0.952	0.963	0.0
224134436	1172	predicted protein [Populus trichocarpa]	0.981	0.923	0.846	0.0
356550630	1132	PREDICTED: topless-related protein 1-lik	0.978	0.952	0.852	0.0
225463556	1138	PREDICTED: protein TOPLESS [Vitis vinife	0.980	0.949	0.855	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.978	0.951	0.854	0.0
449517721	1139	PREDICTED: LOW QUALITY PROTEIN: protein	0.981	0.949	0.846	0.0
449468952	1139	PREDICTED: protein TOPLESS-like [Cucumis	0.981	0.949	0.846	0.0
255553317	1115	WD-repeat protein, putative [Ricinus com	0.961	0.950	0.849	0.0
357458875	1138	WD repeat-containing protein, putative [	0.980	0.949	0.838	0.0
356554802	1136	PREDICTED: topless-related protein 1-lik	0.981	0.952	0.838	0.0

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 2184 bits (5660), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1072/1113 (96%), Positives = 1072/1113 (96%), Gaps = 39/1113 (3%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL
Sbjct: 88   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFPNLKNS        SLNWQHQLCKNPRPNPDIKTLFVDHTCGQP
Sbjct: 148  KKLIEANPLFRDKLQFPNLKNS--------SLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 199

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG
Sbjct: 200  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 259

Query: 256  GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 315
            GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS
Sbjct: 260  GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 319

Query: 316  FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375
            FTGHSHS    QAFS PEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE
Sbjct: 320  FTGHSHS----QAFSAPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375

Query: 376  VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
            VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY
Sbjct: 376  VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435

Query: 436  SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495
            SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG
Sbjct: 436  SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495

Query: 496  HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555
            HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR
Sbjct: 496  HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555

Query: 556  --------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                                      TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW
Sbjct: 556  LFSCGTSKDGESFIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 615

Query: 590  DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 649
            DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA
Sbjct: 616  DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 675

Query: 650  YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 709
            YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE
Sbjct: 676  YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE 735

Query: 710  SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 769
            SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ
Sbjct: 736  SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ 795

Query: 770  RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKI 829
            RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKI
Sbjct: 796  RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKI 855

Query: 830  SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 889
            SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH
Sbjct: 856  SLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH 915

Query: 890  SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 949
            SKRITGLAFSHALNVLVSSGADSQLCVW SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH
Sbjct: 916  SKRITGLAFSHALNVLVSSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH 975

Query: 950  QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1009
            QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV
Sbjct: 976  QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV 1035

Query: 1010 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069
            FSAANLKLRCRINPSAYLPAGV SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE
Sbjct: 1036 FSAANLKLRCRINPSAYLPAGV-SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1094

Query: 1070 GKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            GKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR
Sbjct: 1095 GKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1127

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134436|ref|XP_002327405.1| predicted protein [Populus trichocarpa] gi|222835959|gb|EEE74380.1| predicted protein [Populus trichocarpa]

 Score = 1996 bits (5171), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 974/1150 (84%), Positives = 1027/1150 (89%), Gaps = 68/1150 (5%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR+KAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct: 88   HDRSKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCK PR NPDIKTLF DH+CGQP
Sbjct: 148  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKTPRSNPDIKTLFFDHSCGQP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSPANNPLLGSLPKAG FPPLGAHGPFQPTPAPVP PLAGWMSNPPTVTHPAVSG
Sbjct: 208  NGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPAPLAGWMSNPPTVTHPAVSG 267

Query: 256  G-AIGLGSPSIPA------------------------------------AALKHPRTPPT 278
            G AIGLG+PSI                                      AALKHPRTPP+
Sbjct: 268  GGAIGLGAPSISGSSFLLFAIDASANHHTEYVSIHVSLFNNICILLPCVAALKHPRTPPS 327

Query: 279  NPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKT 338
            NPSVDYPSGD DH++KRTRP+GISDE+NLPVNVLP+SF GH H H   Q F+ P+DLPK 
Sbjct: 328  NPSVDYPSGDPDHVAKRTRPMGISDEVNLPVNVLPMSFPGHGHGHG--QTFNAPDDLPKA 385

Query: 339  VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP 398
            V RTLNQGSSPMSMDFHPVQQT+LLVGTNVG+IGLWEVGSRERLVLRNFKVWDL ACSMP
Sbjct: 386  VVRTLNQGSSPMSMDFHPVQQTILLVGTNVGEIGLWEVGSRERLVLRNFKVWDLNACSMP 445

Query: 399  LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND 458
            LQAALVKDPGVSVNRVIWSPDG+LFGVAYSRHIVQIYSYHG D+VRQHLEIDAHVGGVND
Sbjct: 446  LQAALVKDPGVSVNRVIWSPDGNLFGVAYSRHIVQIYSYHGNDDVRQHLEIDAHVGGVND 505

Query: 459  IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA 518
            +AFS PNKQLCVITCGDDK IKVWDA  GAKQY FEGHEAPVYS+CPH+KENIQFIFSTA
Sbjct: 506  LAFSTPNKQLCVITCGDDKIIKVWDAATGAKQYTFEGHEAPVYSICPHYKENIQFIFSTA 565

Query: 519  LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR----------------------- 555
            LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR                       
Sbjct: 566  LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESYIVEWNESEGA 625

Query: 556  ---TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 612
               TY GFRK SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT+IDADGGLPASPRI
Sbjct: 626  VKRTYVGFRKHSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTTIDADGGLPASPRI 685

Query: 613  RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 672
            RFNK+G LLAVS NDNGIKILA SDGIRLLRTFENL+YDASR SE+  PT++PISAAAAA
Sbjct: 686  RFNKEGTLLAVSANDNGIKILANSDGIRLLRTFENLSYDASRASES--PTVNPISAAAAA 743

Query: 673  AATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR 732
            AATS+GLADR AS+V++ GMNGD R+L DVKPRI EE NDKSK+WKLTE++EP+QCRSLR
Sbjct: 744  AATSSGLADRGASVVAVAGMNGDARNLGDVKPRIAEELNDKSKIWKLTEINEPSQCRSLR 803

Query: 733  LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS 792
            LPENLR TKISRLI+TNSGNAILALASNAIHLLWKWQR++RN+SGKATA V PQLWQP S
Sbjct: 804  LPENLRVTKISRLIYTNSGNAILALASNAIHLLWKWQRSDRNASGKATAGVPPQLWQPSS 863

Query: 793  GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATF 852
            GI+MTND+TDSNPEEAV CFALSKNDSYVMSASGGKISLFNMMTFKTM TFMPPPPAATF
Sbjct: 864  GILMTNDITDSNPEEAVACFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATF 923

Query: 853  LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS 912
            LAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRITGLAFSH L+VLVSSGAD+
Sbjct: 924  LAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSHVLSVLVSSGADA 983

Query: 913  QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 972
            QLCVW+SDGWEKQK RFLQ+PTGRT TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE
Sbjct: 984  QLCVWNSDGWEKQKTRFLQVPTGRTTTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE 1043

Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS 1032
            CVKQW+PRESSAPI+HA FSCDSQLVYA FLDATVCVFSAANL+LRCRINPS+Y P  V 
Sbjct: 1044 CVKQWLPRESSAPISHAVFSCDSQLVYASFLDATVCVFSAANLRLRCRINPSSYPPPNV- 1102

Query: 1033 SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPV 1092
            SSNVHPLVIAAHPQEPN+FALGLSDGGVHVFEPLESEGKWGVPPP +NGS SS+ A P V
Sbjct: 1103 SSNVHPLVIAAHPQEPNQFALGLSDGGVHVFEPLESEGKWGVPPPAENGSASSVAAIPSV 1162

Query: 1093 GGSGSDQAQR 1102
            G SGSDQAQR
Sbjct: 1163 GPSGSDQAQR 1172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 1970 bits (5103), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 950/1114 (85%), Positives = 1023/1114 (91%), Gaps = 36/1114 (3%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR+KAVEILVKDLKVF+TFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct: 88   HDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+CGQP
Sbjct: 148  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSPANNPLLGSLPKAG FPPLGAHGPFQPTPAPVPTPLAGWMSNP TV HPAVSG
Sbjct: 208  NGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHPAVSG 267

Query: 256  GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 315
            GAIGLG+PSIPAA LKHPRTPPTNPSVDYPSGDSDH+SKRTRPIG+SDE+NLPVNVL  +
Sbjct: 268  GAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGDSDHVSKRTRPIGMSDEVNLPVNVLSAT 326

Query: 316  FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375
            F GH H     QAF+ P+DLPKT  R+LNQGSSPMSMDFHPVQQTLLLVGTNVGDI LWE
Sbjct: 327  FPGHGHG----QAFNAPDDLPKTAMRSLNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWE 382

Query: 376  VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
            VGSRERL++RNFKVWDL ACSMP QAALVKDPGVSVNRVIWSPDG+LFGVAYSRHIVQIY
Sbjct: 383  VGSRERLLMRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIY 442

Query: 436  SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495
            SYHGGD+V QHLEIDAHVGGVND+AFSHPNKQLCVITCGDDKTIKVWDA  GAKQY FEG
Sbjct: 443  SYHGGDDVGQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEG 502

Query: 496  HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555
            HEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR
Sbjct: 503  HEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 562

Query: 556  --------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                                      TYQGFRKRSLGVVQFDTTKNR+LAAGDDFSIKFW
Sbjct: 563  LFSCGTSKEGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRYLAAGDDFSIKFW 622

Query: 590  DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 649
            DMD++QLLT++DADGGLPASPRIRFNKDG LLAVS N+NGIKILA +DGIRLLRT EN  
Sbjct: 623  DMDNIQLLTTVDADGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSL 682

Query: 650  YDASRTSEN-SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 708
            YD SRTSE  +KPTI+PISAAAAAA ++A LA+RA+S+V+I  MNGD R+L DVKPRI+E
Sbjct: 683  YDTSRTSEAMTKPTINPISAAAAAATSAA-LAERASSVVAITAMNGDARNLGDVKPRISE 741

Query: 709  ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 768
            ESNDKSK+WKLTE++EP+QCRSL+LPEN+R  KISRLI+TNSGNAILALASNAIHLLWKW
Sbjct: 742  ESNDKSKIWKLTEINEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKW 801

Query: 769  QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 828
            QR +RNS+GKATASV PQLWQP SGI+MTND+TD+N E+AVPCFALSKNDSYVMSASGGK
Sbjct: 802  QRNDRNSTGKATASVQPQLWQPSSGILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGK 861

Query: 829  ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 888
            ISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG
Sbjct: 862  ISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 921

Query: 889  HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 948
            H+KRITGLAFSH LNVLVSSGAD+Q+CVW++DGWEKQK+RFLQ+P GRTP AQ+DTRVQF
Sbjct: 922  HTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQF 981

Query: 949  HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008
            HQDQI FLVVHETQLAI+E TKLEC+KQW PR+SSAPI+HATFSCDSQL+YA FLDATVC
Sbjct: 982  HQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVC 1041

Query: 1009 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068
            V S +NL+LRCRINPSAYL A V SSNV PLVIAAHPQEPN+FA+GLSDGGVHVFEP ES
Sbjct: 1042 VLSVSNLRLRCRINPSAYLSASV-SSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHES 1100

Query: 1069 EGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            EGKWGVPPP++NGSTS+M AT    G+ SD+AQR
Sbjct: 1101 EGKWGVPPPIENGSTSNMAATSV--GASSDEAQR 1132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463556|ref|XP_002268265.1| PREDICTED: protein TOPLESS [Vitis vinifera] gi|297743564|emb|CBI36431.3| unnamed protein product [Vitis vinifera]

 Score = 1968 bits (5098), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 956/1118 (85%), Positives = 1026/1118 (91%), Gaps = 38/1118 (3%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR+KAVEILVKDLKVF+TFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct: 88   HDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFP+LKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP
Sbjct: 148  KKLIEANPLFRDKLQFPHLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSPANNPLLGSLPKAG FPPLGAHGPFQPTPAPVPTPL  WMSNP TVTHPAVSG
Sbjct: 208  NGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPTPL--WMSNPSTVTHPAVSG 265

Query: 256  GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 315
            G IGLG+PSIPAA LKHPRTPPTNPSVDYPSGDS+H++KR RP+GISDE+NLPVNVLPV+
Sbjct: 266  GPIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGDSEHVAKRGRPMGISDEVNLPVNVLPVT 324

Query: 316  FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375
            F GH HS    QAF+ P+DLPKT+ R L QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE
Sbjct: 325  FPGHGHS----QAFNAPDDLPKTLVRNLTQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 380

Query: 376  VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
            VGS+++LV RNFKVWD+GACS+PLQAAL KDPGVSVNR+IWSPDGSLFGVAYSRHIVQIY
Sbjct: 381  VGSKQKLVSRNFKVWDIGACSVPLQAALAKDPGVSVNRIIWSPDGSLFGVAYSRHIVQIY 440

Query: 436  SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495
            SYHGGD+VRQHLEIDAH GGVND+AFSHPNKQLCVITCGDDKTIKVWDATNG KQY FEG
Sbjct: 441  SYHGGDDVRQHLEIDAHAGGVNDLAFSHPNKQLCVITCGDDKTIKVWDATNGTKQYTFEG 500

Query: 496  HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555
            HE  VYSVCPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDY+APGRWCTTMAYSADGTR
Sbjct: 501  HEDAVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTR 560

Query: 556  --------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                                      TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW
Sbjct: 561  LFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 620

Query: 590  DMDSVQLLTSIDADGGLP---ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 646
            DMD++QLLT +DA+GGLP   ASPRIRFNKDG LLAVS N+N IKILA SDG+RLLRTF+
Sbjct: 621  DMDNIQLLTILDAEGGLPGLPASPRIRFNKDGTLLAVSANENSIKILANSDGLRLLRTFD 680

Query: 647  NLAYDASRTSEN-SKPTISPISAAAAAAATSA-GLADRAASMVSIPGMNGDVRSLADVKP 704
            NL+YDASR SE+ +KP I+ ISAAAAAAA ++ GLADR AS+V+I GMNGD R++ DVKP
Sbjct: 681  NLSYDASRASESVTKPAINSISAAAAAAAATSAGLADRGASVVAIAGMNGDARNMGDVKP 740

Query: 705  RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL 764
            R+ EE+NDKSK+WKLTE++E +QCRSLRL ENLR TKISRLI+TNSGNAILALASNAIH 
Sbjct: 741  RLAEETNDKSKIWKLTEINETSQCRSLRLQENLRITKISRLIYTNSGNAILALASNAIHF 800

Query: 765  LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA 824
            LWKWQR +RNSSGKATA+V+PQLWQP SGI+MTNDV D+NPEEAVPCFALSKNDSYVMSA
Sbjct: 801  LWKWQRNDRNSSGKATATVSPQLWQPTSGILMTNDVADTNPEEAVPCFALSKNDSYVMSA 860

Query: 825  SGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS 884
            SGGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKS
Sbjct: 861  SGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKS 920

Query: 885  KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT 944
            KLKGHSKRITGLAFSH LNVLVSSGAD+QLCVWSSDGWEKQK+RFLQ+P GRT T QSDT
Sbjct: 921  KLKGHSKRITGLAFSHVLNVLVSSGADAQLCVWSSDGWEKQKSRFLQVPAGRTSTGQSDT 980

Query: 945  RVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004
            RVQFHQDQ HFLVVHETQLAI+E TKL+CVKQWV RE++API+HATFSCDS LVYA FLD
Sbjct: 981  RVQFHQDQTHFLVVHETQLAIYEATKLDCVKQWVQREAAAPISHATFSCDSLLVYASFLD 1040

Query: 1005 ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064
            ATVCVFSAANL+LRCRINP+AYLPA VS+SNVHPLVIAAHPQEPN+FALGLSDGGV VFE
Sbjct: 1041 ATVCVFSAANLRLRCRINPTAYLPASVSNSNVHPLVIAAHPQEPNQFALGLSDGGVCVFE 1100

Query: 1065 PLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            PLESEGKWGVPPPV+NGS SS+PATP VG SGSDQ QR
Sbjct: 1101 PLESEGKWGVPPPVENGSASSVPATPSVGPSGSDQPQR 1138

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 1963 bits (5085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 953/1115 (85%), Positives = 1027/1115 (92%), Gaps = 37/1115 (3%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR+KAVEILVKDLKVF+TFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct: 88   HDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+CGQP
Sbjct: 148  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSPANNPLLG+LPKAG FPPLGAHGPFQPTPAPVPTPLAGWMSNP TV H AVSG
Sbjct: 208  NGARAPSPANNPLLGALPKAGGFPPLGAHGPFQPTPAPVPTPLAGWMSNPTTVAHAAVSG 267

Query: 256  G-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPV 314
            G AIGLG+PS+PAA LKHPRTPPTNPSVDYPSGDSDH++KRTRP+GISDE+NLPVNVL  
Sbjct: 268  GGAIGLGAPSMPAA-LKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLSA 326

Query: 315  SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 374
            +F GH     HSQAF+ P+D+PKTV RTLNQGSSPMSMDFHP+QQ+LLLVGT+VGDI LW
Sbjct: 327  TFPGHGQ---HSQAFNAPDDIPKTVVRTLNQGSSPMSMDFHPMQQSLLLVGTHVGDIALW 383

Query: 375  EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 434
            EVGSRERLV RNFKVWDL ACSMP QAALVKDPGVSVNRVIWSPDG+LFGVAYSRHIVQI
Sbjct: 384  EVGSRERLVSRNFKVWDLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQI 443

Query: 435  YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494
            YSYHGGDE+RQHLEIDAHVGGVND+AFSHPNKQLCVITCGDDKTIKVWDA +GAKQY FE
Sbjct: 444  YSYHGGDEIRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFE 503

Query: 495  GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 554
            GHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT
Sbjct: 504  GHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 563

Query: 555  R--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 588
            R                          TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF
Sbjct: 564  RLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 623

Query: 589  WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 648
            WDMD+VQLLT++DADGGLPASPRIRFNKDG LLAVS N+NGIKILA  DGIRLLRT EN 
Sbjct: 624  WDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENS 683

Query: 649  AYDASRTSEN-SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 707
             Y+ASR SE  +KPTI+PISAAAAAA ++A LA+RA+S+V+I GMNGD R+L DVKPRI+
Sbjct: 684  LYEASRASEALTKPTINPISAAAAAATSAA-LAERASSVVAIAGMNGDTRNLGDVKPRIS 742

Query: 708  EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 767
            EESNDKSK+WKLTE++E +QCRSL+LPEN+R TKISRLI+TNSGNAILALASNAIHLLWK
Sbjct: 743  EESNDKSKIWKLTEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWK 802

Query: 768  WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGG 827
            WQR ERNSSGKATA++ PQLWQP SGI+MTND+ DSNPE+AVPCFALSKNDSYVMSASGG
Sbjct: 803  WQRNERNSSGKATATLQPQLWQPSSGILMTNDIADSNPEDAVPCFALSKNDSYVMSASGG 862

Query: 828  KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 887
            KISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK
Sbjct: 863  KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 922

Query: 888  GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 947
            GH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DGWEKQK+RFLQ+P GRTP AQSDTRVQ
Sbjct: 923  GHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQ 982

Query: 948  FHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            FHQDQI FLVVHETQLAI+E TKLE +KQW PR+SSAPI++ATFSCDSQLV+A FLDAT+
Sbjct: 983  FHQDQIQFLVVHETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATI 1042

Query: 1008 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067
            CVFSA+NL+LRCRINPS+YLPA V SSN+ PLVIAAHPQEPN+FALGLSDGGVHVFEPLE
Sbjct: 1043 CVFSASNLRLRCRINPSSYLPASV-SSNIQPLVIAAHPQEPNQFALGLSDGGVHVFEPLE 1101

Query: 1068 SEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            SEGKWGVPPP++NGS S++ AT  VG   SDQAQR
Sbjct: 1102 SEGKWGVPPPIENGSASNVAAT-SVG--PSDQAQR 1133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449517721|ref|XP_004165893.1| PREDICTED: LOW QUALITY PROTEIN: protein TOPLESS-like [Cucumis sativus]

 Score = 1961 bits (5081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 945/1117 (84%), Positives = 1026/1117 (91%), Gaps = 35/1117 (3%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR+KAV+ILVKDLKVF TFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct: 88   HDRSKAVDILVKDLKVFXTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFP+LKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+CGQP
Sbjct: 148  KKLIEANPLFRDKLQFPHLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSPANNPLLGSLPK G FPPLGAHGPFQPT APVP PLAGWMSNP  VTHPAVSG
Sbjct: 208  NGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQPTAAPVPAPLAGWMSNPSAVTHPAVSG 267

Query: 256  G-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPV 314
            G AIGLG+PSIPAA LKHPRTPPTNPSV+YPS DSDH+SKR +P+G+SDE+NLPVNVLPV
Sbjct: 268  GGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSADSDHVSKRPKPMGMSDEVNLPVNVLPV 326

Query: 315  SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 374
            SFTGH H+    Q F+ P+DLPKTV RTLNQGS+PMSMDFHP+QQTLLLVGTNVG+IGLW
Sbjct: 327  SFTGHGHA----QTFNAPDDLPKTVMRTLNQGSNPMSMDFHPIQQTLLLVGTNVGEIGLW 382

Query: 375  EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 434
            EVGSRERLV +NFKVWDL ACSMPLQAALVK+P VSVNRVIWSPDGSLFGVAYSRHIVQI
Sbjct: 383  EVGSRERLVSKNFKVWDLNACSMPLQAALVKEPDVSVNRVIWSPDGSLFGVAYSRHIVQI 442

Query: 435  YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494
            YSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQLCVITCGDDKTIKVWDA NGA+QYIFE
Sbjct: 443  YSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQLCVITCGDDKTIKVWDAGNGARQYIFE 502

Query: 495  GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 554
            GHEAPV+SVCPH+KENIQFIFSTALDGKIKAWLYDN+GSRVDY+APGRWCTTMAYSADGT
Sbjct: 503  GHEAPVFSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGT 562

Query: 555  R--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 588
            R                          TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF
Sbjct: 563  RLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 622

Query: 589  WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 648
            WDMD+VQLLT++DADGGLPASPRIRFNKDG LLAVS N+NGIKILA  DGIRLLRTFENL
Sbjct: 623  WDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSGNENGIKILANVDGIRLLRTFENL 682

Query: 649  AYDASRTSE-NSKPTISPISAAAAAAATSAGLA--DRAASMVSIPGMNGDVRSLADVKPR 705
            +YDA+RTSE  +KPTI+PISAAAA AA +A  +  DR AS+V++ G+ GD RSL DVKPR
Sbjct: 683  SYDAARTSEAGTKPTINPISAAAAVAAAAAAGSAADRGASVVTMSGVAGDSRSLGDVKPR 742

Query: 706  ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 765
            I E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R  KISRLI+TNSG+AILALASNAIHLL
Sbjct: 743  IPEDSNDKSKIWKLTEINEPSQCRSLRLPENVRVNKISRLIYTNSGSAILALASNAIHLL 802

Query: 766  WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 825
            WKW R+ERNS+GKATA+V PQLWQP SGI+MTNDV D++ EEAVPCFALSKNDSYVMSAS
Sbjct: 803  WKWTRSERNSTGKATANVLPQLWQPSSGILMTNDVADTSSEEAVPCFALSKNDSYVMSAS 862

Query: 826  GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885
            GGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSK
Sbjct: 863  GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSK 922

Query: 886  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 945
            LKGHSKRITGLAFSH LNVLVSSGAD+QLCVWSSD WEKQK RFLQ+P+GR P++QSDTR
Sbjct: 923  LKGHSKRITGLAFSHLLNVLVSSGADAQLCVWSSDVWEKQKTRFLQLPSGRPPSSQSDTR 982

Query: 946  VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1005
            VQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW PRES API+HATFSCDSQ++YA FLDA
Sbjct: 983  VQFHQDQVHFLVVHETQIAIYETTKLECVKQWTPRESGAPISHATFSCDSQMIYASFLDA 1042

Query: 1006 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065
            TVCVF+ A+L+LRCRI+PSAYLPA VS+++V PLVIAAHPQE N+FALGLSDGGVHVFEP
Sbjct: 1043 TVCVFTVASLRLRCRISPSAYLPASVSNASVQPLVIAAHPQEANQFALGLSDGGVHVFEP 1102

Query: 1066 LESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            LESEGKWGVPPPV+NGS SS+P TP VG SGS+QA R
Sbjct: 1103 LESEGKWGVPPPVENGSASSVPTTPSVGASGSEQAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468952|ref|XP_004152185.1| PREDICTED: protein TOPLESS-like [Cucumis sativus]

 Score = 1960 bits (5078), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 945/1117 (84%), Positives = 1027/1117 (91%), Gaps = 35/1117 (3%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR+KAV+ILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct: 88   HDRSKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFP+LKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+CGQP
Sbjct: 148  KKLIEANPLFRDKLQFPHLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSPANNPLLGSLPK G FPPLGAHGPFQPT APVP PLAGWMSNP  VTHPAVSG
Sbjct: 208  NGARAPSPANNPLLGSLPKPGGFPPLGAHGPFQPTAAPVPAPLAGWMSNPSAVTHPAVSG 267

Query: 256  G-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPV 314
            G AIGLG+PSIPAA LKHPRTPPTNPSV+YPS DSDH+SKR +P+G+SDE+NLPVNVLPV
Sbjct: 268  GGAIGLGAPSIPAA-LKHPRTPPTNPSVEYPSADSDHVSKRPKPMGMSDEVNLPVNVLPV 326

Query: 315  SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 374
            SFTGH H+    Q F+ P+DLPKTV RTLNQGS+PMSMDFHP+QQTLLLVGT+VG+IGLW
Sbjct: 327  SFTGHGHA----QNFNAPDDLPKTVMRTLNQGSNPMSMDFHPIQQTLLLVGTDVGEIGLW 382

Query: 375  EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 434
            EVGSRERLV +NFKVWDL ACSMPLQAALVK+P VSVNRVIWSPDGSLFGVAYSRHIVQI
Sbjct: 383  EVGSRERLVSKNFKVWDLNACSMPLQAALVKEPDVSVNRVIWSPDGSLFGVAYSRHIVQI 442

Query: 435  YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494
            YSYHGGD++RQHLEIDAHVGGVND+AFS+PNKQLCVITCGDDKTIKVWDA NGA+QYIFE
Sbjct: 443  YSYHGGDDMRQHLEIDAHVGGVNDLAFSNPNKQLCVITCGDDKTIKVWDAGNGARQYIFE 502

Query: 495  GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 554
            GHEAPV+SVCPH+KENIQFIFSTALDGKIKAWLYDN+GSRVDY+APGRWCTTMAYSADGT
Sbjct: 503  GHEAPVFSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGT 562

Query: 555  R--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 588
            R                          TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF
Sbjct: 563  RLFSCGTSKDGDSYIVEWNESEGAVKRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 622

Query: 589  WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 648
            WDMD+VQLLT++DADGGLPASPRIRFNKDG LLAVS N+NGIKILA  DGIRLLRTFENL
Sbjct: 623  WDMDNVQLLTTVDADGGLPASPRIRFNKDGTLLAVSGNENGIKILANVDGIRLLRTFENL 682

Query: 649  AYDASRTSE-NSKPTISPISAAAAAAATSAGLA--DRAASMVSIPGMNGDVRSLADVKPR 705
            +YDA+RTSE  +KPTI+PISAAAA AA +A  +  DR AS+V++ G+ GD RSL DVKPR
Sbjct: 683  SYDAARTSEAGTKPTINPISAAAAVAAAAAAGSAADRGASVVTMSGVAGDSRSLGDVKPR 742

Query: 706  ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 765
            I E+SNDKSK+WKLTE++EP+QCRSLRLPEN+R  KISRLI+TNSG+AILALASNAIHLL
Sbjct: 743  IPEDSNDKSKIWKLTEINEPSQCRSLRLPENVRVNKISRLIYTNSGSAILALASNAIHLL 802

Query: 766  WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 825
            WKW R+ERNS+GKATA+V PQLWQP SGI+MTNDV D++ EEAVPCFALSKNDSYVMSAS
Sbjct: 803  WKWTRSERNSTGKATANVLPQLWQPSSGILMTNDVADTSSEEAVPCFALSKNDSYVMSAS 862

Query: 826  GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885
            GGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSK
Sbjct: 863  GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSK 922

Query: 886  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 945
            LKGHSKRITGLAFSH LNVLVSSGAD+QLCVWSSD WEKQK RFLQ+P+GR P++QSDTR
Sbjct: 923  LKGHSKRITGLAFSHLLNVLVSSGADAQLCVWSSDVWEKQKTRFLQLPSGRPPSSQSDTR 982

Query: 946  VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1005
            VQFHQDQ+HFLVVHETQ+AI+ETTKLECVKQW PRES API+HATFSCDSQ++YA FLDA
Sbjct: 983  VQFHQDQVHFLVVHETQIAIYETTKLECVKQWTPRESGAPISHATFSCDSQMIYASFLDA 1042

Query: 1006 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065
            TVCVF+ A+L+LRCRI+PSAYLPA VS+++V PLVIAAHPQE N+FALGLSDGGVHVFEP
Sbjct: 1043 TVCVFTVASLRLRCRISPSAYLPASVSNASVQPLVIAAHPQEANQFALGLSDGGVHVFEP 1102

Query: 1066 LESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            LESEGKWGVPPPV+NGS SS+P TP VG SGS+QA R
Sbjct: 1103 LESEGKWGVPPPVENGSASSVPTTPSVGASGSEQAPR 1139

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553317|ref|XP_002517701.1| WD-repeat protein, putative [Ricinus communis] gi|223543333|gb|EEF44865.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1948 bits (5046), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 947/1115 (84%), Positives = 1007/1115 (90%), Gaps = 55/1115 (4%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVH+GNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHSGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR+KAV+ILVKDLKVF+TFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IML   
Sbjct: 88   HDRSKAVDILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIML--- 144

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
                           FPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+CGQP
Sbjct: 145  ---------------FPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQP 189

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSPANNPLLGSLPKAG FPPLGAHGPFQPTPAPVP PLAGWMSNP  VTHPAVSG
Sbjct: 190  NGARAPSPANNPLLGSLPKAGGFPPLGAHGPFQPTPAPVPAPLAGWMSNPSAVTHPAVSG 249

Query: 256  G-AIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPV 314
            G AIGLG+PSIPAA LKHPRTPPTNPSVDYPSGDSDH++KRTRP+GISDE+NLPVNVLPV
Sbjct: 250  GGAIGLGAPSIPAA-LKHPRTPPTNPSVDYPSGDSDHVAKRTRPMGISDEVNLPVNVLPV 308

Query: 315  SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 374
            SF GH H     Q F+ P+DLPKTV+RTLNQGSSPMSMDFHP++QTLLLVGTNVGD+ LW
Sbjct: 309  SFPGHGHG----QNFNAPDDLPKTVSRTLNQGSSPMSMDFHPLEQTLLLVGTNVGDVALW 364

Query: 375  EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 434
            EVGSRERL+LRNFKVWD+  CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI
Sbjct: 365  EVGSRERLMLRNFKVWDISTCSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 424

Query: 435  YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494
            YSYH GD+VRQHLEIDAHVGGVND+AFS PNKQLCVITCGDDKTIKVWDA  G +QY FE
Sbjct: 425  YSYHRGDDVRQHLEIDAHVGGVNDLAFSTPNKQLCVITCGDDKTIKVWDAATGTRQYTFE 484

Query: 495  GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 554
            GHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT
Sbjct: 485  GHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 544

Query: 555  R--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 588
            R                          +YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF
Sbjct: 545  RLFSCGTSKDGESHIVEWNESEGNVKRSYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 604

Query: 589  WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL 648
            WDMD++QLLTSIDADGGLPASPRIRFNKDG LLAVS N+NGIKILA SDG RLLRTFENL
Sbjct: 605  WDMDNLQLLTSIDADGGLPASPRIRFNKDGSLLAVSANENGIKILANSDGHRLLRTFENL 664

Query: 649  AYDASRTSEN-SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT 707
            +YDASR SE  +KP I+PISAAAA +A  A   DR AS+V+IPGMNGD R++ DVKPRIT
Sbjct: 665  SYDASRASEAVTKPIINPISAAAATSAGLA---DRTASVVTIPGMNGDARNMGDVKPRIT 721

Query: 708  EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK 767
            EESNDKSK+WKLTE++EP QCRSLRLP+NLR  KISRLI+TNSGNAILALASNAIHLLWK
Sbjct: 722  EESNDKSKIWKLTEINEPTQCRSLRLPDNLRVNKISRLIYTNSGNAILALASNAIHLLWK 781

Query: 768  WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGG 827
            WQR+ERNS+GKATA+V+PQLWQP SGI+MTND+TD+NPEEAVPCFALSKNDSYVMSASGG
Sbjct: 782  WQRSERNSTGKATANVSPQLWQPSSGILMTNDITDTNPEEAVPCFALSKNDSYVMSASGG 841

Query: 828  KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK 887
            KISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLK
Sbjct: 842  KISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLK 901

Query: 888  GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 947
            GHSKRITGLAFSH LNVLVSSGAD+QLCVW+SDGWEKQK RFLQ+P GRT T QSDTRVQ
Sbjct: 902  GHSKRITGLAFSHVLNVLVSSGADAQLCVWNSDGWEKQKTRFLQVPPGRTTTGQSDTRVQ 961

Query: 948  FHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            FHQDQI FLVVHETQLAI+E TKLEC KQWV RESSAPI+HATFSCDSQLVYA FLDATV
Sbjct: 962  FHQDQIQFLVVHETQLAIYEATKLECTKQWVTRESSAPISHATFSCDSQLVYASFLDATV 1021

Query: 1008 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067
            CVFSA NL+LRCRINPS+YL A VSSS +HPLVIAAHPQEPN+FALGLSDGGVHVFEPLE
Sbjct: 1022 CVFSAQNLRLRCRINPSSYLSANVSSS-LHPLVIAAHPQEPNQFALGLSDGGVHVFEPLE 1080

Query: 1068 SEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            SEGKWGVPPP +NGS SS+PATP VG SGSDQAQR
Sbjct: 1081 SEGKWGVPPPAENGSASSVPATPSVGPSGSDQAQR 1115

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1928 bits (4994), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 938/1118 (83%), Positives = 1011/1118 (90%), Gaps = 38/1118 (3%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR+KAVEILVKDLKVF+TFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct: 88   HDRSKAVEILVKDLKVFATFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+CGQP
Sbjct: 148  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQP 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGARAPSPAN+PLLGSLPKAG FPPLGAHGPFQP PA VPT LAGWMSNP TV H AVSG
Sbjct: 208  NGARAPSPANSPLLGSLPKAGGFPPLGAHGPFQPNPAAVPTQLAGWMSNPTTVAHAAVSG 267

Query: 256  -GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPV 314
             GAIGLG+PS+P A LKHPRTPP NPSVDYPSGDSDH++KRTRP+GI+DE+NLPVNVL  
Sbjct: 268  AGAIGLGAPSMPGA-LKHPRTPPINPSVDYPSGDSDHVAKRTRPMGITDEVNLPVNVLSG 326

Query: 315  SFTGHSHSHSHSQAFSTPEDLP--KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIG 372
            +F GH HS    QAF+ P+DLP  KTVTRTLNQGSSPMSMDFHPVQQ+LLLVGTNVG I 
Sbjct: 327  TFPGHGHS----QAFNAPDDLPLPKTVTRTLNQGSSPMSMDFHPVQQSLLLVGTNVGGIA 382

Query: 373  LWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV 432
            LWEVGSRE+LV RNFKVWDL ACSMP QAALVKDP VSVNRVIWSPDG+LFGVAYSRHIV
Sbjct: 383  LWEVGSREKLVSRNFKVWDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIV 442

Query: 433  QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492
            QIYSYH GD+VRQHLEIDAHVGGVND+AFSHPNKQLCVITCGDDKTIKVWDA +GAKQY 
Sbjct: 443  QIYSYHTGDDVRQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYT 502

Query: 493  FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552
            FEGHEAPVYSVCPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDY+APGRWCTTMAYSAD
Sbjct: 503  FEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSAD 562

Query: 553  GTR--------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI 586
            GTR                          TYQGFRKRS+GVVQFDTTKNRFLAAGDDFSI
Sbjct: 563  GTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKRSMGVVQFDTTKNRFLAAGDDFSI 622

Query: 587  KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 646
            KFWDMD++QLLT++DADGGLPASPRIRFNKDG LLAVS NDNGIKI+A +DGIRLLRT E
Sbjct: 623  KFWDMDNIQLLTTVDADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLE 682

Query: 647  NLA-YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 705
            N + YDASR SE +KPTI+  S ++AAAATSA LA+RA+S+ +I GMNGD RS+ DVKPR
Sbjct: 683  NNSMYDASRASEMAKPTIN--SMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPR 740

Query: 706  ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 765
            I+EE+NDKSK+WKLTE++EP+ CRSL+LPEN+R  KISRLI+TNSGNAILALASNAIHLL
Sbjct: 741  ISEEANDKSKIWKLTEINEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLL 800

Query: 766  WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 825
            WKW R ERNSSGKA ASV  QLWQP SGI+MTND+ DSNPE++VPCFALSKNDSYVMSAS
Sbjct: 801  WKWPRNERNSSGKANASVPAQLWQPSSGILMTNDIADSNPEDSVPCFALSKNDSYVMSAS 860

Query: 826  GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 885
            GGKISLFNMMTFKTM TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK
Sbjct: 861  GGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK 920

Query: 886  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 945
            LKGH+KRITGLAFSH LNVLVSSGAD+Q+CVW++DGWEKQK RFLQ+P GRTP+AQSDTR
Sbjct: 921  LKGHTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTR 980

Query: 946  VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1005
            VQFHQDQI FLVVHETQLAIFE TKLEC+KQW PR+SSAPI+HATFSCDSQL+YA FLDA
Sbjct: 981  VQFHQDQIQFLVVHETQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDA 1040

Query: 1006 TVCVFSAANLKLRCRINPSAYLPAGVSS-SNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064
            TVCVF+A+NL+LRCRINP AYLPA VSS SNV PLVIAAHP E N+FA+GLSDGGVHVFE
Sbjct: 1041 TVCVFNASNLRLRCRINPPAYLPASVSSNSNVQPLVIAAHPHEANQFAVGLSDGGVHVFE 1100

Query: 1065 PLESEGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            PLESEGKWGVPPP +NGS+S+  A     G  SDQAQR
Sbjct: 1101 PLESEGKWGVPPPNENGSSSNNVAVATSVGLSSDQAQR 1138

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max]

 Score = 1926 bits (4989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 934/1114 (83%), Positives = 1009/1114 (90%), Gaps = 32/1114 (2%)

Query: 16   LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
            LEQESGFFFNMKYFEDEVHNGNWD+VE+YLSGFTKVDDNRYSMKIFFE+ KQKYLEALDK
Sbjct: 28   LEQESGFFFNMKYFEDEVHNGNWDEVERYLSGFTKVDDNRYSMKIFFEVMKQKYLEALDK 87

Query: 76   HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
            HDR+KAVEILVKDLKVF+TFN+ELFKEITQLLTLENFRENEQLSKY DTKSAR+IMLVEL
Sbjct: 88   HDRSKAVEILVKDLKVFATFNDELFKEITQLLTLENFRENEQLSKYCDTKSARAIMLVEL 147

Query: 136  KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
            KKLIEANPLF DKLQFPNLK+SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+CGQ 
Sbjct: 148  KKLIEANPLFHDKLQFPNLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGQL 207

Query: 196  NGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPLAGWMSNPPTVTHPAVSG 255
            NGA APSPANN LLGSLPKAG FPPLGAHGPFQP+PAPVPTPLAGWMSNP TV HP VSG
Sbjct: 208  NGAPAPSPANNLLLGSLPKAGGFPPLGAHGPFQPSPAPVPTPLAGWMSNPTTVAHPEVSG 267

Query: 256  GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 315
            GAIGLG PSIPAA LKHPRTPPT PSVDYPSGDSDH+SKRTRP+G+SDE+NLPVNVL  +
Sbjct: 268  GAIGLGVPSIPAA-LKHPRTPPTYPSVDYPSGDSDHVSKRTRPMGMSDEVNLPVNVLSAT 326

Query: 316  FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375
            F GH H H H QAF+ P+DLPKT  RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDI LWE
Sbjct: 327  FPGHGHGHGHGQAFNAPDDLPKTAMRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIALWE 386

Query: 376  VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
            VGSRERL++RNFKVWDL ACSMP QAALVKDPGVSV RVIWSPDG+LFGVAYSRHIVQIY
Sbjct: 387  VGSRERLLMRNFKVWDLSACSMPFQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIY 446

Query: 436  SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495
            SYH GD+V+QHLEIDAHVGGVND+AFSHPNKQLCVITCGDDKTIKVWDA  GAKQY FEG
Sbjct: 447  SYHSGDDVQQHLEIDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEG 506

Query: 496  HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555
            HEAPVYSVCPH+KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR
Sbjct: 507  HEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 566

Query: 556  --------------------------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                                      TYQGFRKRSLG VQFDTTKNR+LAAGDDFSIKFW
Sbjct: 567  LFSCGTSKDAESSIVEWNESEGAVKRTYQGFRKRSLGFVQFDTTKNRYLAAGDDFSIKFW 626

Query: 590  DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA 649
            DMD++QLLT++DADGGLP SPRIRFNKDG LLAVS  +NGIKILA +DGIRLLRT EN  
Sbjct: 627  DMDNIQLLTTVDADGGLPGSPRIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSL 686

Query: 650  YDASRTSE-NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE 708
            YD SRTSE  +KPTI+PISAAAAAA ++A L +RA S+V I  MNGD R+L DVKPRI+E
Sbjct: 687  YDTSRTSEVMTKPTINPISAAAAAATSAA-LGERALSVVGINAMNGDARNLGDVKPRISE 745

Query: 709  ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW 768
            ESNDKSK+WKLTE++EP+QCRSL+LPEN+R  KISRLI+TNSGNAILALASNAIHLLWKW
Sbjct: 746  ESNDKSKIWKLTEINEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKW 805

Query: 769  QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK 828
            QR +RNS+ KA+ASV PQLWQP SGI+MTND+TDSN E+AVPCFALSKNDSYVMSASGGK
Sbjct: 806  QRNDRNSTVKASASVQPQLWQPSSGILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGK 865

Query: 829  ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 888
            ISLFNMMTFKTM TFMPPPPAA FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG
Sbjct: 866  ISLFNMMTFKTMTTFMPPPPAANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG 925

Query: 889  HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 948
            H+KRITGLAFSH LNVLVSSGAD+Q+CVW++DGWEKQK+RFLQ+P GRTP AQ+DTRVQF
Sbjct: 926  HTKRITGLAFSHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQF 985

Query: 949  HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008
            HQDQI FLVVHETQLAI+E TKLEC+KQW PR+SSAPI+HATFSCDSQL+YA FLDATVC
Sbjct: 986  HQDQIRFLVVHETQLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVC 1045

Query: 1009 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068
            VFS +NL+L+CRINPSAYL A V SSNV PLVIAAHPQEPN+FA+GLSDGGVHVFEPLES
Sbjct: 1046 VFSVSNLRLQCRINPSAYLSASV-SSNVQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLES 1104

Query: 1069 EGKWGVPPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
            EGKWGVPPP++NGSTS+M AT    G+ SD+AQR
Sbjct: 1105 EGKWGVPPPIENGSTSNMAATSV--GASSDEAQR 1136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1102
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.972	0.957	0.728	0.0
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.947	0.923	0.580	0.0
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.489	0.476	0.846	0.0
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.327	0.487	0.371	1.2e-84
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.144	0.474	0.282	2.6e-12
FB|FBgn0036354	391	Poc1 "Proteome of centrioles 1	0.068	0.191	0.307	3.3e-10
TAIR|locus:2159562	589	AT5G08560 "AT5G08560" [Arabido	0.154	0.288	0.245	5e-10
ASPGD|ASPL0000006405	1878	AN6960 [Emericella nidulans (t	0.140	0.082	0.281	3.1e-05
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.195	0.495	0.273	5.9e-10
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.099	0.357	0.256	8.3e-10

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 4126 (1457.5 bits), Expect = 0., P = 0.
 Identities = 807/1108 (72%), Positives = 900/1108 (81%)

Query:    16 LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
             LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALD+
Sbjct:    28 LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDR 87

Query:    76 HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
             HDR KAV+ILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct:    88 HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query:   136 KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
             KKLIEANPLFRDKLQFP L+ SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+C  P
Sbjct:   148 KKLIEANPLFRDKLQFPTLRTSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCRLP 207

Query:   196 NGARAPSPANNPLLGSLPKAGVFPPLGAHGXXXXXXXXXXXXLAGWMSNPPTVTHPAVSG 255
             N ARAPSP NNPLLGSLPKA  FPPLGAHG            LAGWMS+P +V HPAVSG
Sbjct:   208 NDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQPTPSPVPTPLAGWMSSPSSVPHPAVSG 267

Query:   256 GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 315
             G I LG+PSI AA LKHPRTPP+N +VDYPSGDSDH+SKRTRP+GISDE++L VN+LP++
Sbjct:   268 GPIALGAPSIQAA-LKHPRTPPSNSAVDYPSGDSDHVSKRTRPMGISDEVSLGVNMLPMT 326

Query:   316 FTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375
             F G        Q F  P+DLPKTV RTL+QGSSPMSMDFHP++QTLLLVGTNVGDIGLWE
Sbjct:   327 FPGQAHGHN--QTFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWE 384

Query:   376 VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
             VGSRERLV + FKVWDL  CSMPLQAALVK+P VSVNRVIWSPDGSLFGVAYSRHIVQ+Y
Sbjct:   385 VGSRERLVQKTFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLY 444

Query:   436 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495
             SYHGG+++RQHLEIDAHVGGVNDIAFS PNKQLCV TCGDDKTIKVWDA  G K+Y FEG
Sbjct:   445 SYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEG 504

Query:   496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555
             HEAPVYS+CPH+KENIQFIFSTALDGKIKAWLYDN+GSRVDYEAPGRWCTTMAYSADGTR
Sbjct:   505 HEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTR 564

Query:   556 TYQ-GFRKRSLG-VVQFDTTKNRFLAAGDDF---SIKFWDMDSVQ---LLTSIDADGGLP 607
              +  G  K     +V+++ ++         F   S+     D+ +   L    D      
Sbjct:   565 LFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFW 624

Query:   608 ASPRIRF----NKDGCLLA---VSTNDNGIKILATSDGIRLLRTFEN-----LAYDASR- 654
                 I+     + DG L A   +  N  G  +LA S    +++   N     L +     
Sbjct:   625 DMDTIQLLTAIDADGGLQASPRIRFNKEG-SLLAVSANDNMIKVMANSDGLRLLHTVENL 683

Query:   655 TSENSKPTISPIXXXXXXXXXXXXXXXXXXXMVSIPGMNGDVRSLADVKPRITEESNDKS 714
             +SE+SKP I+ I                   +VSIPGMNGD R++ DVKP ITEESNDKS
Sbjct:   684 SSESSKPAINSIPMVERPAS-----------VVSIPGMNGDSRNMVDVKPVITEESNDKS 732

Query:   715 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN 774
             KVWKLTE+ EP+QCRSLRLPEN+R TKISRLIFTNSGNAILALASNAIHLLWKWQR +RN
Sbjct:   733 KVWKLTEVGEPSQCRSLRLPENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRN 792

Query:   775 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNX 834
             ++GKATAS+ PQ WQP SGI+MTNDV ++NPEEAVPCFALSKNDSYVMSASGGKISLFN 
Sbjct:   793 ATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNM 852

Query:   835 XXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 894
                                  HPQDNNIIAIGMDDS+IQIYNVRVDEVKSKLKGHSKRIT
Sbjct:   853 MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRIT 912

Query:   895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH 954
             GLAFS+ LNVLVSSGAD+QLCVW++DGWEKQK++ LQIP GR+ ++ SDTRVQFHQDQ+H
Sbjct:   913 GLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVH 972

Query:   955 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014
             FLVVHETQLAI+ETTKLEC+KQW  RES+APITHATFSCDSQL+Y  F+DAT+CVFS+AN
Sbjct:   973 FLVVHETQLAIYETTKLECMKQWPVRESAAPITHATFSCDSQLIYTSFMDATICVFSSAN 1032

Query:  1015 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1074
             L+LRCR+NPSAYLPA +S+SNVHPLVIAAHPQE N FA+GLSDGGVH+FEPLESEGKWGV
Sbjct:  1033 LRLRCRVNPSAYLPASLSNSNVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGV 1092

Query:  1075 PPPVDNGSTSSMPATPPVGGSGSDQAQR 1102
              PP +NGS S++ ATP VG S SDQ QR
Sbjct:  1093 APPPENGSASAVTATPSVGASASDQPQR 1120

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 3205 (1133.3 bits), Expect = 0., P = 0.
 Identities = 642/1106 (58%), Positives = 786/1106 (71%)

Query:     6 KKLFTSKHFLLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIR 65
             +K   S H  LEQESGFFFN+KYFE++   G WD+VEKYLSGFTKVDDNRYSMKIFFEIR
Sbjct:    19 EKFKESVH-KLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIR 77

Query:    66 KQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTK 125
             KQKYLEALD++DRAKAVEIL KDLKVF+TFNEEL+KEITQLLTLENFRENEQLSKYGDTK
Sbjct:    78 KQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLTLENFRENEQLSKYGDTK 137

Query:   126 SARSIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKT 185
             SARSIM  ELKKLIEANPLFR+KL FP+ K SRLRTLINQSLNWQHQLCKNPRPNPDIKT
Sbjct:   138 SARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLNWQHQLCKNPRPNPDIKT 197

Query:   186 LFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGXXXXXXXX---XXXXLAGWM 242
             LF+DH+C   NGARA +P N P+  ++ +   F PLG HG               LAGWM
Sbjct:   198 LFLDHSCSPSNGARALTPVNLPV-AAVARPSNFVPLGVHGGPFQSNPAPAPNANALAGWM 256

Query:   243 SNP-PTVTHPAVSGGAIGLGSPSIPAAA--LKHPRTPPTNPSV-DYPSGDSDHLSKRTRP 298
             +NP P+ + P  SG       P  P+    LKHPR P  +  + DY S D + L KR R 
Sbjct:   257 ANPNPSSSVP--SGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDYQSADHEQLMKRLRS 314

Query:   299 IGISDEINLPVNVLPVSFTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQ 358
                S+E+  P +  P +               + +DLP+ V  T+ QGS  +SMDFHP  
Sbjct:   315 AQTSNEVTYPAHSHPPA---------------SLDDLPRNVVSTIRQGSVVISMDFHPSH 359

Query:   359 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP 418
              TLL VG + G++ LWEVGSRE++V   FK+W++ ACS+  Q ++VK+P +SV RV WSP
Sbjct:   360 HTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSP 419

Query:   419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT 478
             DG+L GV++++H++ +Y+Y G D +RQHLEIDAHVG VND+AF+HPNKQ+CV+TCGDDK 
Sbjct:   420 DGNLLGVSFTKHLIHVYAYQGSD-LRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKL 478

Query:   479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE 538
             IKVWD + G K + FEGHEAPVYS+CPH KENIQFIFSTALDGKIKAWLYDN+GSRVDY+
Sbjct:   479 IKVWDLS-GKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYD 537

Query:   539 APGRWCTTMAYSADGTR--------------------------TYQGFRKRSLGVVQFDT 572
             APG+WCTTM YSADG+R                          TY GFRK+S GVVQFDT
Sbjct:   538 APGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDT 597

Query:   573 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
             T+NRFLA G+D  IKFW+MD+  LLT ++A+GGLP  PR+RFNKDG LLAV+T DNG KI
Sbjct:   598 TRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKI 657

Query:   633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPIXXXXXXXXXXXXXXXXXXXMVSIPGM 692
             LA +DG+R LR FE  +++AS+ S + K + S +                       P  
Sbjct:   658 LANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPIP 717

Query:   693 NG-DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA-TKISRLIFTNS 750
             NG +  S    KPR   +S DKSK  +LTE+ +P QCR + +P++  + +K++RL++TNS
Sbjct:   718 NGIEAMSRTMEKPR-NLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNS 776

Query:   751 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP 810
             G  +LAL SN +  LWKW R E+N +GKATASV PQ WQP SG++M NDV + NPE +VP
Sbjct:   777 GVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSVP 835

Query:   811 CFALSKNDSYVMSASGGKISLFNXXXXXXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDS 870
             C ALSKNDSYVMSA GGK+SLFN                      HPQDNNIIAIGM+DS
Sbjct:   836 CIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS 895

Query:   871 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL 930
             SI IYNVRVDEVK+KLKGH K ITGLAFS ALN+LVSSGAD+QL  W++D WEK+K+  +
Sbjct:   896 SIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAI 955

Query:   931 QIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRES-SAPITHA 989
             Q+P G+ P    DTRVQFH DQI  LV HETQLAI++ +K+EC+ +WVP+E+ S+PIT A
Sbjct:   956 QLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSA 1013

Query:   990 TFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV-SSSNVHPLVIAAHPQEP 1048
             ++SC+SQLVYA F D  + VF A +L+LRCRI PSAY+P    +S+ + P VI AHPQEP
Sbjct:  1014 SYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSAPIFPQVITAHPQEP 1073

Query:  1049 NEFALGLSDGGVHVFEPLESEGKWGV 1074
             N+ A+GLSDG V V EP E   +WGV
Sbjct:  1074 NQLAVGLSDGSVKVIEPSELSRRWGV 1099

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 2466 (873.1 bits), Expect = 0., Sum P(2) = 0.
 Identities = 459/542 (84%), Positives = 492/542 (90%)

Query:    16 LEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 75
             LEQESGFFFNMKYFEDEVHNGNWD+VEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK
Sbjct:    28 LEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDK 87

Query:    76 HDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVEL 135
             HDR KAV+ILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSAR+IMLVEL
Sbjct:    88 HDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARAIMLVEL 147

Query:   136 KKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQP 195
             KKLIEANPLFRDKLQFP L+NSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDH+CG P
Sbjct:   148 KKLIEANPLFRDKLQFPTLRNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHSCGPP 207

Query:   196 NGARAPSPANNPLLGSLPKAGVFPPLGAHGXXXXXXXXXXXXLAGWMSNPPTVTHPAVSG 255
             NGARAPSP NNPLLG +PKAG FPPLGAHG            LAGWMS+P +V HPAVS 
Sbjct:   208 NGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQPTASPVPTPLAGWMSSPSSVPHPAVSA 267

Query:   256 GAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVS 315
             GAI LG PSIPAA LKHPRTPPTN S+DYPS DS+H+SKRTRP+GISDE+NL VN+LP+S
Sbjct:   268 GAIALGGPSIPAA-LKHPRTPPTNASLDYPSADSEHVSKRTRPMGISDEVNLGVNMLPMS 326

Query:   316 FTGXXXXXXXXQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375
             F+G         AF  P+DLPKTV RTL+QGSSPMSMDFHP++QTLLLVGTNVGDIGLWE
Sbjct:   327 FSGQAHGHS--PAFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWE 384

Query:   376 VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
             VGSRERLV + FKVWDL  CSMPLQAALVK+P VSVNRVIWSPDGSLFGVAYSRHIVQ+Y
Sbjct:   385 VGSRERLVQKTFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLY 444

Query:   436 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495
             SYHGG+++RQHLEIDAHVGGVNDI+FS PNKQLCVITCGDDKTIKVWDA  G K++ FEG
Sbjct:   445 SYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEG 504

Query:   496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR 555
             HEAPVYSVCPH+KENIQFIFSTALDGKIKAWLYDN+GSRVDY+APGRWCTTMAYSADGTR
Sbjct:   505 HEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTR 564

Query:   556 TY 557
              +
Sbjct:   565 LF 566

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 604 (217.7 bits), Expect = 1.2e-84, Sum P(2) = 1.2e-84
 Identities = 139/374 (37%), Positives = 205/374 (54%)

Query:   718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG 777
             K  E+ +P+QC +L LP+     KI+RL ++ SG+ ILALA +A H LW W  ++ N   
Sbjct:   368 KPNEIKDPSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQ-NEFC 426

Query:   778 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNXXXX 837
             K      P+L QP SG  M N++  S  +++  CFA+    SY+ S SGGKI++F+    
Sbjct:   427 KENVYPKPRLHQPQSGKTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNF 483

Query:   838 XXXXXXXXXXXXXXXXXXHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 897
                                P D  ++A+G+DD SI I+ +   +VK KL+GH ++IT LA
Sbjct:   484 EKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLA 541

Query:   898 FSHALNVLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQS-DTRVQFHQDQIH 954
             FS   NVLVSS +D +LC+WS+  W K   KN   +        + S  T +QF   QI 
Sbjct:   542 FSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIE 601

Query:   955 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014
              LVVH+  + ++E   L+C  QW+P  S   IT AT+S D +++Y  F   ++ +  +  
Sbjct:   602 LLVVHDGWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKT 661

Query:  1015 LKLRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1072
                 C+IN +++     S  S  V+P V+AAHP  PN+ + GLS+G V V +PL S G W
Sbjct:   662 FMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSGG-W 720

Query:  1073 GVPPPV-DNGSTSS 1085
             G   P+ DNG  S+
Sbjct:   721 GEAAPLEDNGDYSN 734

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 167 (63.8 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
 Identities = 48/170 (28%), Positives = 83/170 (48%)

Query:   410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
             S++ V +SPDG     A +   ++I+  + G   R    ++ H  G++DIA+S  +K +C
Sbjct:    48 SISSVKFSPDGKWLASASADKTIKIWGAYDGKFERT---LEGHKEGISDIAWSQDSKLIC 104

Query:   470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
               +  DDKTIK+WD  +G      +GH+  V+ V  + + N+  I S + D  ++ W   
Sbjct:   105 --SASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQSNL--IVSGSFDENVRIWDV- 159

Query:   530 NLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL 578
             N G       A     T + ++ DGT    G    ++ +  +DTT  + L
Sbjct:   160 NTGECTKMISAHSDPVTGVHFNRDGTLVVSGSYDGTVRI--WDTTTGQLL 207

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0036354 Poc1 "Proteome of centrioles 1" [Drosophila melanogaster (taxid:7227)]

 Score = 92 (37.4 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
 Identities = 24/78 (30%), Positives = 39/78 (50%)

Query:   568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
             V FD+T +  L A DD S K W +   Q ++S         S +  F+ +G L+A +++D
Sbjct:   108 VDFDSTGHLMLTASDDKSAKIWRVARRQFVSSFAQQNNWVRSAK--FSPNGKLVATASDD 165

Query:   628 NGIKILATSDGIRLLRTF 645
               ++I     G   +RTF
Sbjct:   166 KSVRIYDVDSG-ECVRTF 182

GO:0051297 "centrosome organization" evidence=IMP

TAIR|locus:2159562 AT5G08560 "AT5G08560" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 5.0e-10, Sum P(4) = 5.0e-10
 Identities = 45/183 (24%), Positives = 82/183 (44%)

Query:    15 LLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLE 71
             +LE+ESG   +   +K F  +V +G WD   K L      D+       F  + +QK+LE
Sbjct:    87 MLEEESGISLHNSTIKLFLQQVKDGKWDQSVKTLHRIGFPDEKAVKAASFL-LLEQKFLE 145

Query:    72 ALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIM 131
              L     A A+  L  ++       + + +  + L++  +F  +   +   ++ ++RS +
Sbjct:   146 FLKVEKIADALRTLRNEMAPLRINTKRVHELASSLISPSSFISHTTSTPGKESVNSRSKV 205

Query:   132 LVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHT 191
             L EL+ L+ A+ +  +K         RL  L+  SL+ Q   C          +L+ DH 
Sbjct:   206 LEELQTLLPASVIIPEK---------RLECLVENSLHIQRDSCVFHNTLDSDLSLYSDHQ 256

Query:   192 CGQ 194
             CG+
Sbjct:   257 CGK 259

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009630 "gravitropism" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009888 "tissue development" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0010638 "positive regulation of organelle organization" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

ASPGD|ASPL0000006405 AN6960 [Emericella nidulans (taxid:162425)]

 Score = 146 (56.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
 Identities = 47/167 (28%), Positives = 79/167 (47%)

Query:   385 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 444
             R  K+W   A +  LQ  L +     V  V++S D  L   A     V+I+       ++
Sbjct:   453 RTVKIWH--AATGSLQRTL-EGHNDWVRSVVFSHDSRLIASASDDMTVKIWDT-ATVPLQ 508

Query:   445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 504
              +LE  +H   V  + FSH ++ L   +  DD T+K+WD   G+ +   EGH+  V SV 
Sbjct:   509 NNLE--SHDNWVRSVVFSHDSRLLA--SASDDMTVKIWDTATGSLENTLEGHDDRVNSVS 564

Query:   505 PHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYS 550
                  + + + S + DG +K W Y   G+ +  ++  GR   ++A+S
Sbjct:   565 --FSPDSRLLASASDDGTVKIW-YAATGTVQHTFDGSGRVAISLAFS 608

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030001 "metal ion transport" evidence=IEA

GO:0046873 "metal ion transmembrane transporter activity" evidence=IEA

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 143 (55.4 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
 Identities = 66/241 (27%), Positives = 116/241 (48%)

Query:   411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 470
             +  V +SPDG L     +   ++++    G  ++Q LE   H   V  +AFS PN QL +
Sbjct:    44 IETVTFSPDGRLLASGSNDTTIKLWDPASGG-LKQTLE--GHSSSVQSVAFS-PNGQL-L 98

Query:   471 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL--Y 528
              +   D TIK+W++ + + ++  EGH   V SV      N Q +++ A+ G +K  +  +
Sbjct:    99 ASGSSDTTIKLWNSASDSLKHTMEGHSDRVESVA--FSPNGQ-LWNPAI-GSLKHTIEGH 154

Query:   529 DNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGFR---KRSLG-----VVQFDTTKN-RFL 578
              +    V +   G+   +   SA+ T + +       K +LG     V+    + + R L
Sbjct:   155 SDWVLSVAFSPDGQLLASG--SAEKTIKLWDSATCGLKHTLGGHSNWVLPLVFSPDGRLL 212

Query:   579 AAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD 637
             A+G +D +IK WD  S  L  +++       S  + F+ +G LLA  ++D  IK+  T+ 
Sbjct:   213 ASGSNDATIKLWDPPSGSLKHTLEGHSNKIES--LAFSPNGQLLASGSSDATIKLWDTAT 270

Query:   638 G 638
             G
Sbjct:   271 G 271

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 128 (50.1 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
 Identities = 30/117 (25%), Positives = 59/117 (50%)

Query:   410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
             +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct:    21 AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76

Query:   470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526
              ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W
Sbjct:    77 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW 130

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.8104	0.9682	0.9526	no	no
Q94AI7	TPL_ARATH	No assigned EC number	0.8256	0.9782	0.9531	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1102
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-21
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-17
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	1e-15
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-14
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-13
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-06
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	2e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	4e-05
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	2e-04
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	0.001

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  102 bits (257), Expect = 7e-24
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 32/245 (13%)

Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            V  V +SPDG L         ++++    G+ +R  L+   H G V D+A S     L 
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LK--GHTGPVRDVAASADGTYL- 66

Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
             +   DKTI++WD   G       GH + V SV      + + + S++ D  IK W  +
Sbjct: 67  -ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVWDVE 123

Query: 530 NLGSRVDYEAPGRWCTTMAY----------SADGT------------RTYQGFRKRSLGV 567
                        W  ++A+          S DGT             T  G        
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS- 182

Query: 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
           V F     + L++  D +IK WD+ + + L ++        S  + F+ DG LLA  + D
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNS--VAFSPDGYLLASGSED 240

Query: 628 NGIKI 632
             I++
Sbjct: 241 GTIRV 245

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  100 bits (250), Expect = 5e-23
 Identities = 64/325 (19%), Positives = 101/325 (31%), Gaps = 92/325 (28%)

Query: 350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV 409
             + F P  + L               GS +  +    KVWDL    +      +K    
Sbjct: 13  TCVAFSPDGKLLA-------------TGSGDGTI----KVWDLETGELLRT---LKGHTG 52

Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR---QHLE------------------ 448
            V  V  S DG+      S   ++++    G+ VR    H                    
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 449 ------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ 490
                             +  H   VN +AFS       V +   D TIK+WD   G   
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF--VASSSQDGTIKLWDLRTGKCV 170

Query: 491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS 550
               GH   V SV          + S++ DG IK W                   ++A+S
Sbjct: 171 ATLTGHTGEVNSVAFSPDGE--KLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228

Query: 551 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDADGGLPAS 609
            DG                        LA+G  D +I+ WD+ + + + ++        +
Sbjct: 229 PDG----------------------YLLASGSEDGTIRVWDLRTGECVQTLSG----HTN 262

Query: 610 P--RIRFNKDGCLLAVSTNDNGIKI 632
               + ++ DG  LA  + D  I+I
Sbjct: 263 SVTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.9 bits (234), Expect = 6e-21
 Identities = 68/303 (22%), Positives = 105/303 (34%), Gaps = 68/303 (22%)

Query: 306 NLPVNVLPVSFTGHSH-------SHSHSQAFSTPEDLPKTV----------TRTLNQGSS 348
           +L    L  +  GH+        S   +   S   D  KT+           RTL   +S
Sbjct: 37  DLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD--KTIRLWDLETGECVRTLTGHTS 94

Query: 349 P-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP 407
              S+ F P    +L   +    I +W+V + +              C   L+     D 
Sbjct: 95  YVSSVAFSP-DGRILSSSSRDKTIKVWDVETGK--------------CLTTLRGH--TDW 137

Query: 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ 467
              VN V +SPDG+    +     ++++    G  V        H G VN +AFS   ++
Sbjct: 138 ---VNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL---TGHTGEVNSVAFSPDGEK 191

Query: 468 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL 527
           L   +   D TIK+WD + G       GHE  V SV       +  + S + DG I+ W 
Sbjct: 192 LL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL--LASGSEDGTIRVWD 247

Query: 528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK 587
                            T++A+S DG                      R  +   D +I+
Sbjct: 248 LRTGECVQTLSGHTNSVTSLAWSPDG---------------------KRLASGSADGTIR 286

Query: 588 FWD 590
            WD
Sbjct: 287 IWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 87.5 bits (215), Expect = 9e-18
 Identities = 89/467 (19%), Positives = 169/467 (36%), Gaps = 55/467 (11%)

Query: 315 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGL 373
             +  S     +    +   LP   +  L        S+ F P  + LLL G++ G I L
Sbjct: 33  LGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKL 91

Query: 374 WEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSLFGVAYSRHIV 432
           W++ + E+L+                  +L      SV+++   SPDG+   +A S    
Sbjct: 92  WDLDNGEKLI-----------------KSLEGLHDSSVSKLALSSPDGNSILLASSSLDG 134

Query: 433 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI 492
            +  +      +    ++ H   V  +AFS P+ +L       D TIK+WD   G     
Sbjct: 135 TVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLST 193

Query: 493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552
             GH  PV S+       +    S + DG I+ W              G+   +      
Sbjct: 194 LAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLST----------GKLLRS------ 236

Query: 553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 612
              T  G     +    F    +   +   D +I+ WD+ S   L    +         +
Sbjct: 237 ---TLSGHSDSVVSS--FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL-SV 290

Query: 613 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAA 672
            F+ DG LLA  ++D  +++     G +LL +     ++   +S +  P  S + +  + 
Sbjct: 291 AFSPDGKLLASGSSDGTVRLWDLETG-KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD 349

Query: 673 AATSAGLADRAASMVSIPGMNGDVRSLA--DVKPRITEESNDKS-KVWKLTELSEPNQCR 729
             T      R    +     + +V S++       ++  S D + ++W L+  S      
Sbjct: 350 DGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Query: 730 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS 776
                       ++ L F+  G ++ + +S+    LW  + + ++ S
Sbjct: 410 GHTSR-------VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 32/203 (15%)

Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV-- 503
              +  H GGV  +AF  P+ +L + T   D TIKVWD   G      +GH  PV  V  
Sbjct: 2   RRTLKGHTGGVTCVAF-SPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 563
                    ++ S + D  I+ W         D E                RT  G    
Sbjct: 60  SADGT----YLASGSSDKTIRLW---------DLETGEC-----------VRTLTGHTSY 95

Query: 564 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 623
               V F        ++  D +IK WD+++ + LT++        S  + F+ DG  +A 
Sbjct: 96  VSS-VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS--VAFSPDGTFVAS 152

Query: 624 STNDNGIKILATSDGIRLLRTFE 646
           S+ D  IK+     G + + T  
Sbjct: 153 SSQDGTIKLWDLRTG-KCVATLT 174

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 22 FFFNMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRAK 80
           F   K   + +  G+WD+  ++LS        R S K+ FE+RKQK+LE + +    +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 73.9 bits (182), Expect = 4e-14
 Identities = 42/219 (19%), Positives = 84/219 (38%), Gaps = 29/219 (13%)

Query: 809  VPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM 867
            V C A S +   + + SG G I ++++ T + + T          +A    D   +A G 
Sbjct: 12   VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 868  DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN 927
             D +I+++++   E    L GH+  ++ +AFS    +L SS  D  + VW          
Sbjct: 71   SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD--------- 121

Query: 928  RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS---- 983
                       T +  T ++ H D ++ +        +  +++   +K W  R       
Sbjct: 122  ---------VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Query: 984  -----APITHATFSCDSQLVYACFLDATVCVFSAANLKL 1017
                   +    FS D + + +   D T+ ++  +  K 
Sbjct: 173  LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 70.4 bits (173), Expect = 6e-13
 Identities = 37/170 (21%), Positives = 69/170 (40%), Gaps = 14/170 (8%)

Query: 851  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 910
            T +AF P D  ++A G  D +I+++++   E+   LKGH+  +  +A S     L S  +
Sbjct: 13   TCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS 71

Query: 911  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET 968
            D  + +W       +    ++  TG T    S   V F  D    L     +  + +++ 
Sbjct: 72   DKTIRLWDL-----ETGECVRTLTGHTSYVSS---VAFSPDG-RILSSSSRDKTIKVWDV 122

Query: 969  TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1018
               +C+     R  +  +    FS D   V +   D T+ ++     K  
Sbjct: 123  ETGKCLT--TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCV 170

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 72.4 bits (176), Expect = 6e-13
 Identities = 93/492 (18%), Positives = 169/492 (34%), Gaps = 102/492 (20%)

Query: 442 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAP 499
                L +  H   +  IAFS   + L   +   D TIK+WD  NG K    +   H++ 
Sbjct: 54  PDLSSLLLRGHEDSITSIAFSPDGELLL--SGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111

Query: 500 VYSVCPHHKE-NIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTY 557
           V  +     + N   + S++LDG +K W     G  +   E      T++A+S DG    
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG---- 167

Query: 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 617
                           K     +  D +IK WD+ + + L+++                 
Sbjct: 168 ----------------KLLASGSSLDGTIKLWDLRTGKPLSTLAGH-----------TDP 200

Query: 618 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA 677
              LA S +   +    +SDG   L          S  S +S   +S  S          
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFS---------- 250

Query: 678 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL 737
                          +G +          +  S+   ++W L   S   +  S       
Sbjct: 251 --------------PDGSLL--------ASGSSDGTIRLWDLRSSSSLLRTLSGHS---- 284

Query: 738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT 797
             + +  + F+  G  + + +S+    LW       +       S               
Sbjct: 285 --SSVLSVAFSPDGKLLASGSSDGTVRLW-------DLETGKLLSS-------------- 321

Query: 798 NDVTDSNPEEAVPCFALSKNDSYVMSASG--GKISLFNMMTFKTMATFMPPPPAATFLAF 855
             +T    E  V   + S + S ++S     G I L+++ T K + T          ++F
Sbjct: 322 --LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSF 378

Query: 856 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC 915
            P D  +++ G  D +++++++    +   L GH+ R+T L FS     L S  +D+ + 
Sbjct: 379 SP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIR 437

Query: 916 VWSSDGWEKQKN 927
           +W      K  +
Sbjct: 438 LWDLKTSLKSVS 449

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 2/114 (1%)

Query: 806 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 864
              V   A S +   ++S+S  G I L+++ T K + T          +AF P D  ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235

Query: 865 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            G +D +I+++++R  E    L GH+  +T LA+S     L S  AD  + +W 
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 48/238 (20%), Positives = 95/238 (39%), Gaps = 16/238 (6%)

Query: 786  QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFM 844
            ++W   +G ++    T       V   A S + +Y+ S S    I L+++ T + + T  
Sbjct: 34   KVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLT 90

Query: 845  PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV 904
                  + +AF P D  I++    D +I++++V   +  + L+GH+  +  +AFS     
Sbjct: 91   GHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTF 149

Query: 905  LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQL 963
            + SS  D  + +W     +          TG T    S   V F  D    L    +  +
Sbjct: 150  VASSSQDGTIKLWDLRTGKCVATL-----TGHTGEVNS---VAFSPDGEKLLSSSSDGTI 201

Query: 964  AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021
             +++ +  +C+     R     +    FS D  L+ +   D T+ V+     +    +
Sbjct: 202  KLWDLSTGKCLGT--LRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTL 257

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 69.0 bits (167), Expect = 7e-12
 Identities = 69/303 (22%), Positives = 106/303 (34%), Gaps = 54/303 (17%)

Query: 336 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW--EVGSRERLVLR-------- 385
            K ++          S+ F P    L+  G++ G I LW    G   R  L         
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247

Query: 386 ----------------NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR 429
                             ++WDL + S  L+   +     SV  V +SPDG L     S 
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLR--TLSGHSSSVLSVAFSPDGKLLASGSSD 305

Query: 430 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 489
             V+++    G  +   L +  H G V+ ++FS P+  L V    DD TI++WD   G  
Sbjct: 306 GTVRLWDLETGKLLSS-LTLKGHEGPVSSLSFS-PDGSLLVSGGSDDGTIRLWDLRTGKP 363

Query: 490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 549
               EGH   V SV       +    ST  DG ++ W         + +      T++ +
Sbjct: 364 LKTLEGHS-NVLSVSFSPDGRVVSSGST--DGTVRLWDLSTGSLLRNLDGHTSRVTSLDF 420

Query: 550 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 609
           S DG                         +   D +I+ WD+ +     S   DG + AS
Sbjct: 421 SPDG---------------------KSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLAS 459

Query: 610 PRI 612
              
Sbjct: 460 KSS 462

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 56/318 (17%), Positives = 111/318 (34%), Gaps = 21/318 (6%)

Query: 787  LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG---GKISLFNMMT-FKTMAT 842
            LW   +G  +   +   +          S + + ++ AS    G + L+++ T  K + T
Sbjct: 91   LWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRT 150

Query: 843  FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL 902
                  + T LAF P    + +    D +I+++++R  +  S L GH+  ++ LAFS   
Sbjct: 151  LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDG 210

Query: 903  N-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET 961
              ++ S  +D  + +W      K     L   +    ++       F  D          
Sbjct: 211  GLLIASGSSDGTIRLWDLSTG-KLLRSTLSGHSDSVVSS-------FSPDGSLLASGSSD 262

Query: 962  QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021
                    +            S+ +    FS D +L+ +   D TV ++     KL   +
Sbjct: 263  GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322

Query: 1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNG 1081
                +    VSS       ++  P      + G  DG + +++    +    +    +  
Sbjct: 323  TLKGH-EGPVSS-------LSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVL 374

Query: 1082 STSSMPATPPVGGSGSDQ 1099
            S S  P    V    +D 
Sbjct: 375  SVSFSPDGRVVSSGSTDG 392

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 11/134 (8%)

Query: 886  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR 945
            LKGH+  +T +AFS    +L +   D  + VW  +  E    R L+  TG          
Sbjct: 5    LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL--RTLKGHTG------PVRD 56

Query: 946  VQFHQDQIHFLVVHE-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004
            V    D  +         + +++    ECV+      S   ++   FS D +++ +   D
Sbjct: 57   VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFSPDGRILSSSSRD 114

Query: 1005 ATVCVFSAANLKLR 1018
             T+ V+     K  
Sbjct: 115  KTIKVWDVETGKCL 128

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483
            +  H G V  +AFS     L   +  DD T++VWD
Sbjct: 6   TLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
           E+   LKGH+  +T +AFS     L S   D  + +W 
Sbjct: 3   ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483
            +  H G V  +AFS   K L   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
           ++   LKGH+  +T +AFS   N+L S   D  + VW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 11/105 (10%)

Query: 23  FFNMKYFEDEVHNGNWDDVEKYL----SGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR 78
           F       + + NG+ ++  ++         K++ N     + FE+R Q+++E + +   
Sbjct: 2   FKERNKIRESLLNGDLEEALEWCNENKPELLKINSN-----LEFELRLQQFIELIREGKI 56

Query: 79  AKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD 123
            +A+E   ++L  F  FNE+  KEI +L+ L  F +    S Y  
Sbjct: 57  LEALEYARENLAPF--FNEQHLKEIQKLMGLLAFPDPTDSSPYKS 99

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 25/165 (15%)

Query: 329 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK 388
           +        +            S+ F P    L+  G++ G I LW++ + + L      
Sbjct: 311 WDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG- 369

Query: 389 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLE 448
                                +V  V +SPDG +     +   V+++    G  +R    
Sbjct: 370 -------------------HSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR---N 407

Query: 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF 493
           +D H   V  + FS       + +   D TI++WD     K   F
Sbjct: 408 LDGHTSRVTSLDFS--PDGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1102
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.98
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.98
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.93
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0639	705	consensus Transducin-like enhancer of split protei	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG1963	792	consensus WD40 repeat protein [General function pr	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.91
KOG1963	792	consensus WD40 repeat protein [General function pr	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
KOG1273	405	consensus WD40 repeat protein [General function pr	99.87
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.86
KOG4328	498	consensus WD40 protein [Function unknown]	99.86
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG1310	758	consensus WD40 repeat protein [General function pr	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.79
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.76
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG1188	376	consensus WD40 repeat protein [General function pr	99.74
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.74
KOG4227	609	consensus WD40 repeat protein [General function pr	99.74
PRK11028	330	6-phosphogluconolactonase; Provisional	99.74
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.73
KOG0649	325	consensus WD40 repeat protein [General function pr	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
KOG1334	559	consensus WD40 repeat protein [General function pr	99.71
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.7
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.69
KOG1334	559	consensus WD40 repeat protein [General function pr	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.67
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.67
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.66
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.65
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.65
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.64
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.63
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.63
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.62
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.62
KOG1310	758	consensus WD40 repeat protein [General function pr	99.62
COG4946	668	Uncharacterized protein related to the periplasmic	99.59
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.59
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.58
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
PRK01742	429	tolB translocation protein TolB; Provisional	99.58
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.57
KOG2139	445	consensus WD40 repeat protein [General function pr	99.55
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.5
KOG2321	703	consensus WD40 repeat protein [General function pr	99.5
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.49
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.49
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.49
KOG2321	703	consensus WD40 repeat protein [General function pr	99.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.48
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.46
PRK03629	429	tolB translocation protein TolB; Provisional	99.45
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.44
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.43
PRK03629	429	tolB translocation protein TolB; Provisional	99.42
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.42
KOG2315	566	consensus Predicted translation initiation factor	99.41
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.41
PRK04922	433	tolB translocation protein TolB; Provisional	99.41
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.41
COG4946	668	Uncharacterized protein related to the periplasmic	99.41
PRK02889	427	tolB translocation protein TolB; Provisional	99.4
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.4
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.4
PRK05137	435	tolB translocation protein TolB; Provisional	99.4
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.39
PRK02889	427	tolB translocation protein TolB; Provisional	99.39
KOG2315	566	consensus Predicted translation initiation factor	99.39
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.37
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
PRK04922	433	tolB translocation protein TolB; Provisional	99.36
PRK05137	435	tolB translocation protein TolB; Provisional	99.35
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.32
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.29
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.27
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.26
PRK00178	430	tolB translocation protein TolB; Provisional	99.24
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.24
PRK01029	428	tolB translocation protein TolB; Provisional	99.23
PRK04792	448	tolB translocation protein TolB; Provisional	99.23
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.22
KOG4547	541	consensus WD40 repeat-containing protein [General	99.21
KOG2314	698	consensus Translation initiation factor 3, subunit	99.19
KOG2314	698	consensus Translation initiation factor 3, subunit	99.19
KOG4547	541	consensus WD40 repeat-containing protein [General	99.18
PRK00178	430	tolB translocation protein TolB; Provisional	99.14
PRK04792	448	tolB translocation protein TolB; Provisional	99.14
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.13
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.11
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.1
PRK01029	428	tolB translocation protein TolB; Provisional	99.08
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.08
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.05
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.04
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.01
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.0
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.96
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.93
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.9
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.88
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.88
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	98.84
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.84
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.82
PRK04043	419	tolB translocation protein TolB; Provisional	98.8
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.8
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.78
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.76
PRK04043	419	tolB translocation protein TolB; Provisional	98.75
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.74
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.71
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.7
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.7
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.68
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.66
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.66
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.66
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.63
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.63
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.63
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.62
KOG2695	425	consensus WD40 repeat protein [General function pr	98.61
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.6
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.58
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.58
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.55
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.53
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.52
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.52
KOG2695	425	consensus WD40 repeat protein [General function pr	98.51
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.5
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.47
PRK02888	635	nitrous-oxide reductase; Validated	98.47
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.44
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.43
PRK02888	635	nitrous-oxide reductase; Validated	98.42
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.39
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.38
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.34
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.33
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.31
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.26
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.25
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.23
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	98.21
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.2
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.2
KOG3621	726	consensus WD40 repeat-containing protein [General	98.14
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.12
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.12
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.08
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.07
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.06
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.05
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.05
KOG3621	726	consensus WD40 repeat-containing protein [General	98.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.0
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.94
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.91
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.91
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.88
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.87
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.87
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.81
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.79
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.78
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.77
COG3391	381	Uncharacterized conserved protein [Function unknow	97.75
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.74
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.72
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.63
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.58
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.48
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.45
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.44
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.44
PRK13616	591	lipoprotein LpqB; Provisional	97.43
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.41
COG3391	381	Uncharacterized conserved protein [Function unknow	97.37
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.28
PRK13616	591	lipoprotein LpqB; Provisional	97.27
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.23
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.23
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.19
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.17
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.12
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.11
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.11
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.08
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.06
KOG2395	644	consensus Protein involved in vacuole import and d	97.03
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.98
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.95
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.81
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.76
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.73
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.72
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.65
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.63
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.61
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.59
KOG2395	644	consensus Protein involved in vacuole import and d	96.58
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.52
PHA02713	557	hypothetical protein; Provisional	96.46
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.45
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.42
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.4
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	96.33
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.32
PRK10115	686	protease 2; Provisional	96.31
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.3
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.27
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.26
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.24
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.23
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.19
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	96.16
PHA02713	557	hypothetical protein; Provisional	96.14
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.06
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.95
PF14727	418	PHTB1_N: PTHB1 N-terminus	95.91
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.88
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.88
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.79
KOG2444	238	consensus WD40 repeat protein [General function pr	95.75
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.64
KOG2444	238	consensus WD40 repeat protein [General function pr	95.62
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.43
PRK10115	686	protease 2; Provisional	95.33
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.3
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.13
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.11
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.1
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.85
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.83
PHA03098	534	kelch-like protein; Provisional	94.72
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	94.54
PHA02790	480	Kelch-like protein; Provisional	94.5
PRK13684	334	Ycf48-like protein; Provisional	94.4
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.37
PRK13684	334	Ycf48-like protein; Provisional	94.14
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	94.08
PHA03098	534	kelch-like protein; Provisional	94.0
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	93.93
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.8
PF13449	326	Phytase-like: Esterase-like activity of phytase	93.67
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.64
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.41
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.27
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.24
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	93.07
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.04
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.01
KOG2247	615	consensus WD40 repeat-containing protein [General	93.01
COG5167	776	VID27 Protein involved in vacuole import and degra	92.96
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.71
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	92.51
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	92.47
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	92.29
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	92.16
PHA02790	480	Kelch-like protein; Provisional	91.98
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.93
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.56
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.94
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.88
KOG3616	1636	consensus Selective LIM binding factor [Transcript	90.82
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.76
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	90.7
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	90.69
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	90.59
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	90.46
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.23
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.22
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.19
COG5276	370	Uncharacterized conserved protein [Function unknow	90.04
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.0
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.89
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.23
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.2
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.2
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	88.87
COG1520	370	FOG: WD40-like repeat [Function unknown]	88.68
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.65
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.47
COG4590	733	ABC-type uncharacterized transport system, permeas	88.44
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	88.29
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.81
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	87.23
COG4590	733	ABC-type uncharacterized transport system, permeas	87.2
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.2
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	87.01
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.35
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	86.34
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.21
PF12768	281	Rax2: Cortical protein marker for cell polarity	85.11
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	84.49
KOG3616	1636	consensus Selective LIM binding factor [Transcript	84.3
PLN00033	398	photosystem II stability/assembly factor; Provisio	84.15
PRK13615	557	lipoprotein LpqB; Provisional	83.86
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.36
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	83.0
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	82.95
COG3292	671	Predicted periplasmic ligand-binding sensor domain	82.21
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	81.99
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	81.86
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	81.25
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	80.98
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	80.77
PRK13614	573	lipoprotein LpqB; Provisional	80.7
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	80.43
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	80.32
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	80.22

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.3e-66  Score=518.99  Aligned_cols=483  Identities=21%  Similarity=0.322  Sum_probs=384.2

Q ss_pred             cchhHHhHHHHHHHHhhhcCCCcc---HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCH
Q 001311            2 RKSSKKLFTSKHFLLEQESGFFFN---MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR   78 (1102)
Q Consensus         2 ~~~~~~g~~~s~~~l~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~   78 (1102)
                      |-|+..||.+|+.+||.|||+.+.   ++.|.+.||+|+|+.++..+..+. +++.....++.|++.||+|||++..|..
T Consensus        26 q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~fLEf~k~~~i  104 (519)
T KOG0293|consen   26 QILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIFLEFLKTGSI  104 (519)
T ss_pred             HHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHHHHHHhhccH
Confidence            568999999999999999999996   999999999999999999998884 4445445559999999999999999999


Q ss_pred             HHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCCchhHHHHHHHHHHhhcccCcccccccCCCccchHH
Q 001311           79 AKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLKNSR  158 (1102)
Q Consensus        79 ~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p~~r  158 (1102)
                      ..|+.+||+.+.+|.. +.++|++|..-|..++-....+...-......|.+|+++|+++|||++|         ||++|
T Consensus       105 s~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~il---------lP~rR  174 (519)
T KOG0293|consen  105 SHALPVLRNPVLYLRK-NKKKFHELASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNIL---------LPKRR  174 (519)
T ss_pred             hhhhHhhhcchhhhhh-hHHHHHHHHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhc---------CChHH
Confidence            9999999999999765 8999999988877655443222111112467899999999999999999         99999


Q ss_pred             HHHHHHHHHHHHHHhccCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 001311          159 LRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPAPVPTPL  238 (1102)
Q Consensus       159 L~~ll~q~~~~q~~~~~~~~~~~~~~sl~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~  238 (1102)
                      |++||+||++||++.|+|||. .+..|||+||.|++               .++|                .        
T Consensus       175 LehLl~qAv~~Q~d~cvyhns-ldsvsll~Dh~c~~---------------~qip----------------~--------  214 (519)
T KOG0293|consen  175 LEHLLEQAVKYQRDSCVYHNS-LDSVSLLSDHFCGR---------------LQIP----------------S--------  214 (519)
T ss_pred             HHHHHHHHHHHHHhHhHHhcc-cchhhhhhhcccCc---------------ccCC----------------c--------
Confidence            999999999999999999994 77799999999999               7887                1        


Q ss_pred             ccccCCCCCCCCCCcccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCccccCCccccccccCC
Q 001311          239 AGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTG  318 (1102)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~v~~~~  318 (1102)
                                                .+.+                                                  
T Consensus       215 --------------------------qt~q--------------------------------------------------  218 (519)
T KOG0293|consen  215 --------------------------QTWQ--------------------------------------------------  218 (519)
T ss_pred             --------------------------hhhh--------------------------------------------------
Confidence                                      1111                                                  


Q ss_pred             CCCcCCCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCcc
Q 001311          319 HSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP  398 (1102)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~  398 (1102)
                                                                                                      
T Consensus       219 --------------------------------------------------------------------------------  218 (519)
T KOG0293|consen  219 --------------------------------------------------------------------------------  218 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311          399 LQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  478 (1102)
Q Consensus       399 ~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~  478 (1102)
                          ++..|.++|+-+.||++|+|||+++.|.+..+|++.....++..+++.+|..+|..+.||||++  +|++|+.|..
T Consensus       219 ----il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~  292 (519)
T KOG0293|consen  219 ----ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEV  292 (519)
T ss_pred             ----hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHh
Confidence                1233333444444444444444444444444444443333555667999999999999999999  7999999999


Q ss_pred             EEEEeCCCCeeeEEee-cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311          479 IKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       479 i~vWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      +++||+.+|.+.+.+. +|...+.+++|.  +||..+++|+.|+++..||++....                     ..+
T Consensus       293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~--pDg~~~V~Gs~dr~i~~wdlDgn~~---------------------~~W  349 (519)
T KOG0293|consen  293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWC--PDGFRFVTGSPDRTIIMWDLDGNIL---------------------GNW  349 (519)
T ss_pred             eeeccCCcchhhhhcccCcCCCcceeEEc--cCCceeEecCCCCcEEEecCCcchh---------------------hcc
Confidence            9999999999988774 456888999985  5668899999999999999985331                     223


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                      .+.+...+..+++++||.++++.+.|..|++++.++......+..+.   .|++.++|.|++++++.-.+..+++||+..
T Consensus       350 ~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~---~its~~iS~d~k~~LvnL~~qei~LWDl~e  426 (519)
T KOG0293|consen  350 EGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ---PITSFSISKDGKLALVNLQDQEIHLWDLEE  426 (519)
T ss_pred             cccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC---ceeEEEEcCCCcEEEEEcccCeeEEeecch
Confidence            34444566777777777889999999999999998877665555443   599999999999999999999999999985


Q ss_pred             CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311          638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  717 (1102)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w  717 (1102)
                      . ..++.+.||...                                                                  
T Consensus       427 ~-~lv~kY~Ghkq~------------------------------------------------------------------  439 (519)
T KOG0293|consen  427 N-KLVRKYFGHKQG------------------------------------------------------------------  439 (519)
T ss_pred             h-hHHHHhhccccc------------------------------------------------------------------
Confidence            5 556555554321                                                                  


Q ss_pred             ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311          718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  797 (1102)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  797 (1102)
                                                        .+++                                          
T Consensus       440 ----------------------------------~fiI------------------------------------------  443 (519)
T KOG0293|consen  440 ----------------------------------HFII------------------------------------------  443 (519)
T ss_pred             ----------------------------------ceEE------------------------------------------
Confidence                                              1111                                          


Q ss_pred             cccCCCCCCCCeeEEEEe-cCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          798 NDVTDSNPEEAVPCFALS-KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       798 ~~~~~~~~~~~i~~l~~s-~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                                   .-||. .+..++++|+ |+.|+||+..+++.+.++.||...|+|++|+|.+..++|+|++||+|+||
T Consensus       444 -------------rSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW  510 (519)
T KOG0293|consen  444 -------------RSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW  510 (519)
T ss_pred             -------------EeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence                         11121 3557899999 99999999999999999999999999999999999999999999999999


Q ss_pred             Eeec
Q 001311          876 NVRV  879 (1102)
Q Consensus       876 d~~~  879 (1102)
                      ....
T Consensus       511 g~~~  514 (519)
T KOG0293|consen  511 GPSD  514 (519)
T ss_pred             cCCc
Confidence            8653

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.8e-60  Score=458.36  Aligned_cols=451  Identities=20%  Similarity=0.303  Sum_probs=376.1

Q ss_pred             CcchhHHhHHHHHHHHhhhcCCCcc----HHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCC
Q 001311            1 MRKSSKKLFTSKHFLLEQESGFFFN----MKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKH   76 (1102)
Q Consensus         1 ~~~~~~~g~~~s~~~l~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~   76 (1102)
                      +|-|.|..+++++++||+|+++.||    +..|-+.|-+|+||.+++.++.| ++|++     -+..+|||..|||+|.+
T Consensus        15 ~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~k-----kL~dLYEqivlEliELR   88 (508)
T KOG0275|consen   15 EQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPDK-----KLIDLYEQIVLELIELR   88 (508)
T ss_pred             HHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCchh-----HHHHHHHHHHHHHHHHH
Confidence            3668899999999999999999998    89999999999999999999999 88887     56889999999999999


Q ss_pred             CHHHHHHHHHhh--cccccccCHHHHHHHHHHhcccccccccccccCCC-chhH-HHHHHHHHHhhcccCcccccccCCC
Q 001311           77 DRAKAVEILVKD--LKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKSA-RSIMLVELKKLIEANPLFRDKLQFP  152 (1102)
Q Consensus        77 ~~~~a~~~l~~~--~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-~~~~-R~~l~~~l~~~i~~~~~~~~~~~~~  152 (1102)
                      +...|..+||+-  +.-|+..++|+|-+|..||..+.++.++.   |.+ .++. |..+.+.|...+..           
T Consensus        89 EL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~Ea---Y~dssKEkrRa~IAQ~ls~EV~V-----------  154 (508)
T KOG0275|consen   89 ELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREA---YGDSSKEKRRAVIAQALSGEVHV-----------  154 (508)
T ss_pred             hhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhh---cCcchHHHHHHHHHHHhcCceEE-----------
Confidence            999999999984  66667889999999999999999999998   655 4554 58888888888887           


Q ss_pred             ccchHHHHHHHHHHHHHHHHhccCCCCCCCCcccccccccCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCCCC
Q 001311          153 NLKNSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPFQPTPA  232 (1102)
Q Consensus       153 ~~p~~rL~~ll~q~~~~q~~~~~~~~~~~~~~sl~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  232 (1102)
                       +||+||..||.||++||++ .                                   |.+|++..+|      +|+..+|
T Consensus       155 -VppSRLlaLlGQaLKWQqH-Q-----------------------------------GLLPPGt~iD------LFRGkAA  191 (508)
T KOG0275|consen  155 -VPPSRLLALLGQALKWQQH-Q-----------------------------------GLLPPGTTID------LFRGKAA  191 (508)
T ss_pred             -cChHHHHHHHHHHhhhHhh-c-----------------------------------CCCCCCceee------eccchhh
Confidence             9999999999999999998 2                                   6889888888      8887744


Q ss_pred             CCCCCcccccCCCCCCCCCCcccCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCccccccccccCCCCccccCCcccc
Q 001311          233 PVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVL  312 (1102)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  312 (1102)
                      -.                                                                 ...+|-       
T Consensus       192 ~K-----------------------------------------------------------------~~~Ee~-------  199 (508)
T KOG0275|consen  192 MK-----------------------------------------------------------------DQEEER-------  199 (508)
T ss_pred             hh-----------------------------------------------------------------hhHhhh-------
Confidence            10                                                                 001111       


Q ss_pred             ccccCCCCCcCCCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeecc
Q 001311          313 PVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDL  392 (1102)
Q Consensus       313 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~  392 (1102)
                         |+..-                 .....++.++.+.|..|||||+| |++|+.||.|.|||+.+|+......++.-| 
T Consensus       200 ---~Pt~l-----------------~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd-  257 (508)
T KOG0275|consen  200 ---YPTQL-----------------ARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-  257 (508)
T ss_pred             ---chHHh-----------------hhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhhc-
Confidence               11000                 00114566778899999999997 999999999999999999887654443222 


Q ss_pred             CCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEE
Q 001311          393 GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT  472 (1102)
Q Consensus       393 ~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s  472 (1102)
                                .+..|.++|.|++||.|..+||+|+.||.|+||.+.+|.|++.+  -+.|+..|+|+.|+.|+.  -+++
T Consensus       258 ----------~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrF--drAHtkGvt~l~FSrD~S--qiLS  323 (508)
T KOG0275|consen  258 ----------NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRF--DRAHTKGVTCLSFSRDNS--QILS  323 (508)
T ss_pred             ----------ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHh--hhhhccCeeEEEEccCcc--hhhc
Confidence                      47788999999999999999999999999999999999998853  238999999999999999  5999


Q ss_pred             ecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCC--eeeEEEEc
Q 001311          473 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--WCTTMAYS  550 (1102)
Q Consensus       473 ~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s  550 (1102)
                      ++.|.+++|.-+.+|++++.++||...|+...|  .++|..+++++.||+|++|+..+.++..++...+.  .|.++...
T Consensus       324 ~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~  401 (508)
T KOG0275|consen  324 ASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL  401 (508)
T ss_pred             ccccceEEEeccccchhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence            999999999999999999999999999999887  57778999999999999999999999887765432  45555554


Q ss_pred             cCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC-CCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001311          551 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDGCLLAVSTNDNG  629 (1102)
Q Consensus       551 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~  629 (1102)
                      |...                    ..++.+...++|+|.++ .|+.+..+.. ....+...+++++|.|.++.+.+.|+.
T Consensus       402 PKnp--------------------eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~v  460 (508)
T KOG0275|consen  402 PKNP--------------------EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGV  460 (508)
T ss_pred             CCCC--------------------ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcE
Confidence            4433                    57888889999999998 5777777753 233345778899999999999999999


Q ss_pred             EEEEEccCCccceeecc
Q 001311          630 IKILATSDGIRLLRTFE  646 (1102)
Q Consensus       630 i~iwd~~~~~~~~~~~~  646 (1102)
                      ++.+.+.+| .+-+.+.
T Consensus       461 lYCF~~~sG-~LE~tl~  476 (508)
T KOG0275|consen  461 LYCFSVLSG-KLERTLP  476 (508)
T ss_pred             EEEEEeecC-ceeeeee
Confidence            999999888 4444443

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.4e-56  Score=478.57  Aligned_cols=574  Identities=15%  Similarity=0.232  Sum_probs=471.4

Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeCCCCeeE-EeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311          352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  430 (1102)
Q Consensus       352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  430 (1102)
                      ++|+++|+. |++... ..|.+-|+.+++.. ..                  .-......|++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence            899999996 776653 46888999998773 21                  2344567899999999999999999999


Q ss_pred             eEEEEEccCCceeeeEEEeec-cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC
Q 001311          431 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  509 (1102)
Q Consensus       431 ~v~vwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~  509 (1102)
                      .+++|++.+++.++.   ++. |++||.-++|+|.+.  ++++||.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus        85 llrv~~L~tgk~irs---wKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIRS---WKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhHh---HhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            999999999987764   555 999999999999997  89999999999999999999999999999999999999988


Q ss_pred             CccEEEEEeCCCeEEEEEcCCCCC-eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEE
Q 001311          510 NIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  588 (1102)
Q Consensus       510 ~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  588 (1102)
                      +...|++|..|+++++||+.+... ...+..|...|+++.|++|+.                     .++++|.|..+.+
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~---------------------~~ls~~RDkvi~v  218 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL---------------------ELLSVGRDKVIIV  218 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc---------------------eEEEeccCcEEEE
Confidence            888899999999999999996554 667778888888888877764                     6899999999999


Q ss_pred             EECCCcceEEEEcCCCCCCCcCeEEEcCC-----CCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCc
Q 001311          589 WDMDSVQLLTSIDADGGLPASPRIRFNKD-----GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  663 (1102)
Q Consensus       589 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (1102)
                      ||+.+.+...+++....   +-++.+-++     +.++++.+.+|.+++||..++. +.........+          .+
T Consensus       219 wd~~~~~~l~~lp~ye~---~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~-~~~~~~~~~~~----------e~  284 (775)
T KOG0319|consen  219 WDLVQYKKLKTLPLYES---LESVVRLREELGGKGEYIITAGGSGVVQYWDSESGK-CVYKQRQSDSE----------EI  284 (775)
T ss_pred             eehhhhhhhheechhhh---eeeEEEechhcCCcceEEEEecCCceEEEEecccch-hhhhhccCCch----------hh
Confidence            99988877777765544   666777776     6799999999999999998883 33222211000          00


Q ss_pred             ccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceE
Q 001311          664 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  743 (1102)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~  743 (1102)
                                                   . ..........++....|..+.++|.++.....++       .|..+.|.
T Consensus       285 -----------------------------~-~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i-------vG~ndEI~  327 (775)
T KOG0319|consen  285 -----------------------------D-HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI-------VGYNDEIL  327 (775)
T ss_pred             -----------------------------h-cceeccccCceEEEEccceEEEEEccccEEehhh-------cCCchhhe
Confidence                                         0 0111122345566667788999987765443333       35778899


Q ss_pred             EEEE-ccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311          744 RLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  822 (1102)
Q Consensus       744 ~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la  822 (1102)
                      ++.| .|+.++++++++.+.+++|++.+...                    +    .+.  +|...|.++....+|-+|+
T Consensus       328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------------------~----ii~--GH~e~vlSL~~~~~g~lla  381 (775)
T KOG0319|consen  328 DMKFLGPEESHLAVATNSPELRLYTLPTSYC--------------------Q----IIP--GHTEAVLSLDVWSSGDLLA  381 (775)
T ss_pred             eeeecCCccceEEEEeCCCceEEEecCCCce--------------------E----EEe--CchhheeeeeecccCcEEE
Confidence            9988 46778899999999999997633111                    1    122  3999999999888889999


Q ss_pred             EEe-CCeEEEEEcCCCc----eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee---------eeeecc
Q 001311          823 SAS-GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV---------KSKLKG  888 (1102)
Q Consensus       823 s~s-dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~---------~~~l~~  888 (1102)
                      +++ |.++++|.++...    ++....+|.+.|.+++++.....++++++.|+++++|++...+.         ......
T Consensus       382 t~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a  461 (775)
T KOG0319|consen  382 TGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA  461 (775)
T ss_pred             EecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh
Confidence            999 9999999884432    34567899999999999886678999999999999999976221         123357


Q ss_pred             ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001311          889 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  967 (1102)
Q Consensus       889 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd  967 (1102)
                      |...|++++.+|+.+++||||.|++.+||+++..     .....+.||..   .|.++.|++..+.+++ +.|++|+||.
T Consensus       462 HdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-----~l~~vLsGH~R---Gvw~V~Fs~~dq~laT~SgD~TvKIW~  533 (775)
T KOG0319|consen  462 HDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-----RLLGVLSGHTR---GVWCVSFSKNDQLLATCSGDKTVKIWS  533 (775)
T ss_pred             hcccccceEecCCCceEEecccccceeeecccCc-----eEEEEeeCCcc---ceEEEEeccccceeEeccCCceEEEEE
Confidence            9999999999999999999999999999999953     45777888885   8999999999999999 5999999999


Q ss_pred             cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311          968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus       968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
                      +.+..|++++.  ||...|..+.|-.+|+.|++++.||.|++|++.++++++.+.       .|.+. |+  +++-+| +
T Consensus       534 is~fSClkT~e--GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD-------~H~Dr-vW--aL~~~~-~  600 (775)
T KOG0319|consen  534 ISTFSCLKTFE--GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLD-------AHNDR-VW--ALSVSP-L  600 (775)
T ss_pred             eccceeeeeec--CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhh-------hccce-eE--EEeecC-c
Confidence            99999999998  899999999999999999999999999999999999999887       55455 88  666677 4


Q ss_pred             CCEEEEEecCCcEEEEeccCCC
Q 001311         1048 PNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1048 ~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      ..+++||+.||.|.+|.-.+.+
T Consensus       601 ~~~~~tgg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  601 LDMFVTGGGDGRIIFWKDVTEE  622 (775)
T ss_pred             cceeEecCCCeEEEEeecCcHH
Confidence            6799999999999999876654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1e-55  Score=473.74  Aligned_cols=546  Identities=13%  Similarity=0.192  Sum_probs=452.6

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCC-CCCCeEEEEEccCCCeE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVNRVIWSPDGSLF  423 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~spdg~~l  423 (1102)
                      ..+.|++++.+||+++ |++++....+++|++.+++.+..                   .+. |+++|.-++|+|.|.+|
T Consensus        61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll  120 (775)
T KOG0319|consen   61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL  120 (775)
T ss_pred             chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence            4679999999999996 89999999999999999977663                   455 99999999999999999


Q ss_pred             EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEeecCCCCeEE
Q 001311          424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEAPVYS  502 (1102)
Q Consensus       424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~~h~~~v~~  502 (1102)
                      |+|+.|+.|+|||+..+.+..   .|+||.+.|.++.|.|+-...+|++|+.|+++++||+.+.. ++.++..|...|++
T Consensus       121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts  197 (775)
T KOG0319|consen  121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS  197 (775)
T ss_pred             EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence            999999999999999988765   59999999999999999876679999999999999999654 48888999999999


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      +.|..  |+..+++++.|..+.+||+..-+....++.. ..+.++.+.+++.                ...+.+++++|.
T Consensus       198 L~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~~----------------~~~~~~~~TaG~  258 (775)
T KOG0319|consen  198 LAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREEL----------------GGKGEYIITAGG  258 (775)
T ss_pred             eeecc--CCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechhc----------------CCcceEEEEecC
Confidence            99854  4678999999999999999665555444332 2344444433311                011468999999


Q ss_pred             CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCC
Q 001311          583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  662 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (1102)
                      +|.+++||.++++++....... ...+..+...+....++..+.|..+.++|..+. ++.+.+-|..+.+.        .
T Consensus       259 ~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~--------D  328 (775)
T KOG0319|consen  259 SGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEIL--------D  328 (775)
T ss_pred             CceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhhe--------e
Confidence            9999999999998876655332 223666666676667777788999999998888 78888888777654        2


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccce
Q 001311          663 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  742 (1102)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i  742 (1102)
                      ....+                                ++...++.++....+|++++.+....    .+    .+|...|
T Consensus       329 m~~lG--------------------------------~e~~~laVATNs~~lr~y~~~~~~c~----ii----~GH~e~v  368 (775)
T KOG0319|consen  329 MKFLG--------------------------------PEESHLAVATNSPELRLYTLPTSYCQ----II----PGHTEAV  368 (775)
T ss_pred             eeecC--------------------------------CccceEEEEeCCCceEEEecCCCceE----EE----eCchhhe
Confidence            33333                                56788999999999999987764333    22    5699999


Q ss_pred             EEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC-CeE
Q 001311          743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYV  821 (1102)
Q Consensus       743 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~l  821 (1102)
                      .++....+|..|++++.|.++++|.++.+..                   .....  -...+|.+.|.+++++..+ .++
T Consensus       369 lSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~--a~~~gH~~svgava~~~~~asff  427 (775)
T KOG0319|consen  369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCV--AQANGHTNSVGAVAGSKLGASFF  427 (775)
T ss_pred             eeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhh--hhhcccccccceeeecccCccEE
Confidence            9999888888999999999999998732211                   00111  1223599999999998765 478


Q ss_pred             EEEe-CCeEEEEEcCCCc---------eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311          822 MSAS-GGKISLFNMMTFK---------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  891 (1102)
Q Consensus       822 as~s-dg~I~iwd~~~~~---------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  891 (1102)
                      ++++ |.++++|++...+         +..+...|...|++++++| +.+++|+|+.|.+.+||++.......+|.||..
T Consensus       428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R  506 (775)
T KOG0319|consen  428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR  506 (775)
T ss_pred             EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCcc
Confidence            8888 9999999987511         1123457999999999999 899999999999999999999999999999999


Q ss_pred             cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001311          892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK  970 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~  970 (1102)
                      .|+++.|++..+.|+|+|.|++|+||.+++     ..+++.+.||..   .|..+.|-.+|++|++ +.||.+++|++++
T Consensus       507 Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt  578 (775)
T KOG0319|consen  507 GVWCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKT  578 (775)
T ss_pred             ceEEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccc
Confidence            999999999999999999999999999998     457889999985   8999999999999999 5999999999999


Q ss_pred             ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311          971 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       971 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      ++|+.++.  .|.+.|++++.+++..++++|+.||.|.+|.=.|
T Consensus       579 ~eC~~tlD--~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  579 NECEMTLD--AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             hhhhhhhh--hccceeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            99999876  8999999999999999999999999999996433

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.4e-51  Score=436.54  Aligned_cols=600  Identities=18%  Similarity=0.291  Sum_probs=458.7

Q ss_pred             cccccCCCCCcC-CCCcCCCCCCCCCccceee--ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeee
Q 001311          312 LPVSFTGHSHSH-SHSQAFSTPEDLPKTVTRT--LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK  388 (1102)
Q Consensus       312 ~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~  388 (1102)
                      -.+.|++++... ++.-...+..++.++...+  +.+...|++++.||+|.. |++-...|...+-++.....++...| 
T Consensus        18 Gnl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~l-llavdE~g~~~lvs~~~r~Vlh~f~f-   95 (893)
T KOG0291|consen   18 GNLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTL-LLAVDERGRALLVSLLSRSVLHRFNF-   95 (893)
T ss_pred             CcEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceE-EEEEcCCCcEEEEecccceeeEEEee-
Confidence            444577776533 2222222233334444444  458999999999999996 66667789999999988888876544 


Q ss_pred             eeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCce-----eeeEEEeeccccCEEEEEEcC
Q 001311          389 VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-----VRQHLEIDAHVGGVNDIAFSH  463 (1102)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~-----~~~~~~l~~h~~~V~~v~~s~  463 (1102)
                                         +.+|.|+.|||||+++|+|.. ..+.||.......     .....++.+|-..|.++.|+.
T Consensus        96 -------------------k~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~  155 (893)
T KOG0291|consen   96 -------------------KRGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSD  155 (893)
T ss_pred             -------------------cCccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEecc
Confidence                               458999999999999998864 5699998654322     334567889999999999999


Q ss_pred             CCCeeEEEEecCCCcEEEEeCCCCee--eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeee-----
Q 001311          464 PNKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----  536 (1102)
Q Consensus       464 d~~~~~l~s~~~d~~i~vWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-----  536 (1102)
                      |.+  +|++|+.|.++++|+++..+-  .+.+.+|.+.|.+.-|  ..+...+++.+.||.+.+|..........     
T Consensus       156 DSr--~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd  231 (893)
T KOG0291|consen  156 DSR--LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD  231 (893)
T ss_pred             CCc--eEEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCccccccccc
Confidence            999  899999999999999987666  5678999999987666  44556899999999999998773211100     


Q ss_pred             ecC---------CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311          537 YEA---------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  607 (1102)
Q Consensus       537 ~~~---------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  607 (1102)
                      ..+         ....+..+.|..- ++.+-......+++.+|++..+.|+++-..|...+|++....+++.+....+  
T Consensus       232 ~eg~~d~~~~~~~Eek~~~~~~~k~-~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~--  308 (893)
T KOG0291|consen  232 EEGSDDEEMDEDGEEKTHKIFWYKT-KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQ--  308 (893)
T ss_pred             ccccccccccccchhhhcceEEEEE-EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccc--
Confidence            000         0001111111111 1222222336889999999999999999999999999999999999986654  


Q ss_pred             CcCeEEEcCCCCEEEEEECC-CcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311          608 ASPRIRFNKDGCLLAVSTND-NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  686 (1102)
Q Consensus       608 ~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1102)
                      .|..++|+..|.+|+.|+.. |.+.+|+..+. ..+...                                         
T Consensus       309 ~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQ-----------------------------------------  346 (893)
T KOG0291|consen  309 KILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQ-----------------------------------------  346 (893)
T ss_pred             eeeEEEecccCCEEEEcCCccceEEEEEeecc-ceeeec-----------------------------------------
Confidence            69999999999999999864 78999987665 222111                                         


Q ss_pred             cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEee
Q 001311          687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  766 (1102)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw  766 (1102)
                                                                       ++|...+.+++++|||+++++|+.||.|+||
T Consensus       347 -------------------------------------------------QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvW  377 (893)
T KOG0291|consen  347 -------------------------------------------------QGHSDRITSLAYSPDGQLIATGAEDGKVKVW  377 (893)
T ss_pred             -------------------------------------------------cccccceeeEEECCCCcEEEeccCCCcEEEE
Confidence                                                             3488899999999999999999999999999


Q ss_pred             eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC
Q 001311          767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP  845 (1102)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~  845 (1102)
                      |.                      .+|.+... +.  .|.+.|+.+.|+..|+.+++.+ ||+|+.||+...+..+++..
T Consensus       378 n~----------------------~SgfC~vT-Ft--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~  432 (893)
T KOG0291|consen  378 NT----------------------QSGFCFVT-FT--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS  432 (893)
T ss_pred             ec----------------------cCceEEEE-ec--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence            86                      33333221 22  2999999999999999999999 99999999999999999875


Q ss_pred             CCC-CeeEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc
Q 001311          846 PPP-AATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  923 (1102)
Q Consensus       846 ~~~-~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  923 (1102)
                      ... ...|++..| .|.++..|+.|. .|+||++++|+++..+.||.++|.+++|+|++..|||++.|.+|++||+-...
T Consensus       433 P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~  511 (893)
T KOG0291|consen  433 PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSS  511 (893)
T ss_pred             CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccC
Confidence            543 577888988 788998888876 89999999999999999999999999999999999999999999999987632


Q ss_pred             ccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccC------------------CCCC
Q 001311          924 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR------------------ESSA  984 (1102)
Q Consensus       924 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------------------~h~~  984 (1102)
                      . ....+...       ..+..++|+|||+.|+++ -||.|.+||+..+..+..+...                  ....
T Consensus       512 ~-~vEtl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K  583 (893)
T KOG0291|consen  512 G-TVETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGK  583 (893)
T ss_pred             c-eeeeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCC
Confidence            1 12223222       367999999999999995 8999999999887766443211                  1246


Q ss_pred             CeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCc------------------c--------------------
Q 001311          985 PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA------------------Y-------------------- 1026 (1102)
Q Consensus       985 ~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~------------------~-------------------- 1026 (1102)
                      ..+.+++|+||.+|++|+....|++|++.++.+++++..+.                  +                    
T Consensus       584 ~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~  663 (893)
T KOG0291|consen  584 TFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIA  663 (893)
T ss_pred             ceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCcccccccccccccccccc
Confidence            78999999999999999999999999999998888765211                  0                    


Q ss_pred             c--------CCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1027 L--------PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1027 ~--------~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      +        ...+....|.+.++.|+| .|+-++.++..| |.||.+.+
T Consensus       664 lpG~~~gdlssRr~rpeIrv~sv~fsP-tgraFAaatTEG-l~IYsld~  710 (893)
T KOG0291|consen  664 LPGVQRGDLSSRRFRPEIRVTSVQFSP-TGRAFAAATTEG-LLIYSLDT  710 (893)
T ss_pred             CCccccCCccccccCceEEEEEEEECC-CcCeeeeecccc-eEEEecCC
Confidence            0        011223356778999999 478888887766 45666543

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.7e-50  Score=414.20  Aligned_cols=577  Identities=14%  Similarity=0.162  Sum_probs=435.0

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  427 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  427 (1102)
                      .-.-+.-.|.|+.++.+.+  +.|.+-+++......                   ++.+|...++-..|||.|.|+|+|.
T Consensus        20 ~~~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD   78 (603)
T KOG0318|consen   20 VPIIIGGDPKGDNILYTNG--KSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGD   78 (603)
T ss_pred             cceEeccCCCCCeEEEeCC--CEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecC
Confidence            3344556778888888766  678888888766544                   5889999999999999999999999


Q ss_pred             CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCeeeEEeecCCCCeEEEee
Q 001311          428 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFEGHEAPVYSVCP  505 (1102)
Q Consensus       428 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~  505 (1102)
                      ..|+|+|||....+.+ ...+++.-.++|..|+|+.|+++  |+..+  .++..+++-.++|.-+..+.||...|+++.|
T Consensus        79 ~sG~vRIWdtt~~~hi-LKnef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~  155 (603)
T KOG0318|consen   79 VSGKVRIWDTTQKEHI-LKNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDF  155 (603)
T ss_pred             CcCcEEEEeccCccee-eeeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeec
Confidence            9999999999875433 22357777899999999999996  44433  4444555555688899999999999999998


Q ss_pred             eecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCe
Q 001311          506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  585 (1102)
Q Consensus       506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  585 (1102)
                      -++.. -.+++|+.|++|.+|+-..-+-...+..|...|.+                     +.|+|||.++++++.||.
T Consensus       156 KpsRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~---------------------VRysPDG~~Fat~gsDgk  213 (603)
T KOG0318|consen  156 KPSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNC---------------------VRYSPDGSRFATAGSDGK  213 (603)
T ss_pred             cCCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceee---------------------EEECCCCCeEEEecCCcc
Confidence            66543 57999999999999964433333333444444544                     455555568999999999


Q ss_pred             EEEEECCCcceEEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcc
Q 001311          586 IKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  664 (1102)
Q Consensus       586 i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1102)
                      |.+||-.+|+.+..+. ...|.+.|.+++|+||+..+++++.|.+++|||+.+. .+++.+.-.... .           
T Consensus       214 i~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~-slv~t~~~~~~v-~-----------  280 (603)
T KOG0318|consen  214 IYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN-SLVSTWPMGSTV-E-----------  280 (603)
T ss_pred             EEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc-ceEEEeecCCch-h-----------
Confidence            9999999999999987 3445668999999999999999999999999999988 666655321110 0           


Q ss_pred             cchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEE
Q 001311          665 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  744 (1102)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~  744 (1102)
                                                  ...+........|++.+.+|.+.+++.......   +.+    .+|...|++
T Consensus       281 ----------------------------dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~---~~i----~GHnK~ITa  325 (603)
T KOG0318|consen  281 ----------------------------DQQVGCLWQKDHLITVSLSGTINYLNPSDPSVL---KVI----SGHNKSITA  325 (603)
T ss_pred             ----------------------------ceEEEEEEeCCeEEEEEcCcEEEEecccCCChh---hee----cccccceeE
Confidence                                        011112223678899999999999998875522   111    579999999


Q ss_pred             EEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEE
Q 001311          745 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  824 (1102)
Q Consensus       745 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~  824 (1102)
                      +..++++++|++++.||.|.-|+...+                      ..  ..+.+..|...|.+++.+..+.++.++
T Consensus       326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g----------------------~~--~~~~g~~h~nqI~~~~~~~~~~~~t~g  381 (603)
T KOG0318|consen  326 LTVSPDGKTIYSGSYDGHINSWDSGSG----------------------TS--DRLAGKGHTNQIKGMAASESGELFTIG  381 (603)
T ss_pred             EEEcCCCCEEEeeccCceEEEEecCCc----------------------cc--cccccccccceEEEEeecCCCcEEEEe
Confidence            999999999999999999999986432                      11  113334599999999999888887777


Q ss_pred             eCCeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCC
Q 001311          825 SGGKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  902 (1102)
Q Consensus       825 sdg~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~  902 (1102)
                      -|.++++.++........  ++ -.....+++..+ ++.+++..+.++.+.+=|...-   ..+. -.-...+++++|++
T Consensus       382 ~Dd~l~~~~~~~~~~t~~~~~~-lg~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~---~~~~-~~y~~s~vAv~~~~  455 (603)
T KOG0318|consen  382 WDDTLRVISLKDNGYTKSEVVK-LGSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKV---SSIP-IGYESSAVAVSPDG  455 (603)
T ss_pred             cCCeEEEEecccCcccccceee-cCCCceeEEEcC-CCCEEEEEecCcEEEEecCCcc---eeec-cccccceEEEcCCC
Confidence            799999999865443322  12 122344888888 7767776766655554443321   2221 22346789999999


Q ss_pred             CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCC
Q 001311          903 NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRE  981 (1102)
Q Consensus       903 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~  981 (1102)
                      ..++.|+.|+.|+||.+...+.........   |.   ++|+.++||||+.|||++ ..+.+.+||+.+.+.... ...-
T Consensus       456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~---h~---a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~-~w~F  528 (603)
T KOG0318|consen  456 SEVAVGGQDGKVHVYSLSGDELKEEAKLLE---HR---AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTN-RWAF  528 (603)
T ss_pred             CEEEEecccceEEEEEecCCcccceeeeec---cc---CCceEEEECCCCcEEEEeccCCcEEEEEcccCceecc-eeee
Confidence            999999999999999999866433322222   22   489999999999999997 788999999999887333 2235


Q ss_pred             CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEE
Q 001311          982 SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1061 (1102)
Q Consensus       982 h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~ 1061 (1102)
                      |...|.+++|||+.+++|+|+.|-.|.||+++.-.....++      ..|... |+  .+.|.  |...|++.+.|..|+
T Consensus       529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik------nAH~~g-Vn--~v~wl--de~tvvSsG~Da~iK  597 (603)
T KOG0318|consen  529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK------NAHLGG-VN--SVAWL--DESTVVSSGQDANIK  597 (603)
T ss_pred             eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec------cccccC-ce--eEEEe--cCceEEeccCcceeE
Confidence            89999999999999999999999999999998776554443      233334 66  88888  468999999999999


Q ss_pred             EEecc
Q 001311         1062 VFEPL 1066 (1102)
Q Consensus      1062 vW~~~ 1066 (1102)
                      +|++.
T Consensus       598 ~W~v~  602 (603)
T KOG0318|consen  598 VWNVT  602 (603)
T ss_pred             Eeccc
Confidence            99974

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.9e-54  Score=425.89  Aligned_cols=374  Identities=20%  Similarity=0.339  Sum_probs=303.3

Q ss_pred             CCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCC
Q 001311          331 TPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS  410 (1102)
Q Consensus       331 ~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  410 (1102)
                      ......++....-+|.+.|.|++|+|+|++ ||+|+.|.++++||+.|.....                   +.++|...
T Consensus       100 rvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~KgH~~W  159 (480)
T KOG0271|consen  100 RVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKGHKNW  159 (480)
T ss_pred             cccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecCCccE
Confidence            444445555556789999999999999997 9999999999999999987776                   58999999


Q ss_pred             eEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-----CCCeeEEEEecCCCcEEEEeCC
Q 001311          411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-----PNKQLCVITCGDDKTIKVWDAT  485 (1102)
Q Consensus       411 V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-----d~~~~~l~s~~~d~~i~vWd~~  485 (1102)
                      |.|++|||||+.||+|+.||+|++||.++|+++..  .|.+|...|++++|-|     ..+  +|++++.||+|+|||+.
T Consensus       160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~  235 (480)
T KOG0271|consen  160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTK  235 (480)
T ss_pred             EEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEcc
Confidence            99999999999999999999999999999998754  5899999999999965     455  79999999999999999


Q ss_pred             CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311          486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  565 (1102)
Q Consensus       486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  565 (1102)
                      .+.++..+.||+.+|+|++|-  ++ .+|++|+.|++|++|+...+.....+.+|...|+.++.+.|--           
T Consensus       236 ~~~~~~~lsgHT~~VTCvrwG--G~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~-----------  301 (480)
T KOG0271|consen  236 LGTCVRTLSGHTASVTCVRWG--GE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYV-----------  301 (480)
T ss_pred             CceEEEEeccCccceEEEEEc--CC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhh-----------
Confidence            999999999999999999982  33 5999999999999999999889999999999999998876532           


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeec
Q 001311          566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  645 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  645 (1102)
                                 |-+|.-|.+=+-....+......+..       .....-..+..|++|++|.++.+|+.....+++.. 
T Consensus       302 -----------LRtgaf~~t~~~~~~~se~~~~Al~r-------Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~r-  362 (480)
T KOG0271|consen  302 -----------LRTGAFDHTGRKPKSFSEEQKKALER-------YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITR-  362 (480)
T ss_pred             -----------hhccccccccccCCChHHHHHHHHHH-------HHHhhccCcceeEEecCCceEEEecccccccchhh-
Confidence                       22222221100000000000000000       00111123356666666666666653222111110 


Q ss_pred             ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCC
Q 001311          646 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  725 (1102)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~  725 (1102)
                                                                                                      
T Consensus       363 --------------------------------------------------------------------------------  362 (480)
T KOG0271|consen  363 --------------------------------------------------------------------------------  362 (480)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC
Q 001311          726 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  805 (1102)
Q Consensus       726 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  805 (1102)
                                                                                                .  .+|
T Consensus       363 --------------------------------------------------------------------------m--tgH  366 (480)
T KOG0271|consen  363 --------------------------------------------------------------------------M--TGH  366 (480)
T ss_pred             --------------------------------------------------------------------------h--hch
Confidence                                                                                      1  127


Q ss_pred             CCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          806 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      ..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.+++|||+++.++..
T Consensus       367 q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~  445 (480)
T KOG0271|consen  367 QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQ  445 (480)
T ss_pred             hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecc
Confidence            77888999999999999999 99999999999999999999999999999999 99999999999999999999999999


Q ss_pred             eeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311          885 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  918 (1102)
                      .|.||.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       446 DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  446 DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999999999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-47  Score=394.78  Aligned_cols=538  Identities=17%  Similarity=0.216  Sum_probs=420.3

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      ...+|...++-..|||.|-| +|+|...|+|||||....+.+...+|+                 --.++|..++|++|+
T Consensus        54 iYtEH~~~vtVAkySPsG~y-iASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~ds  115 (603)
T KOG0318|consen   54 IYTEHAHQVTVAKYSPSGFY-IASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDFDS  115 (603)
T ss_pred             eeccccceeEEEEeCCCceE-EeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCCCC
Confidence            34569999999999999996 999999999999999876665554444                 346799999999999


Q ss_pred             CeEEEEECC----CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC
Q 001311          421 SLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  496 (1102)
Q Consensus       421 ~~las~~~d----~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h  496 (1102)
                      ++|++.++.    |.+.+||  +|..+.   ++.||...|+++.|-|.... .++||++|++|.+|+=.--+...++..|
T Consensus       116 ~RI~avGEGrerfg~~F~~D--SG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H  189 (603)
T KOG0318|consen  116 KRIAAVGEGRERFGHVFLWD--SGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH  189 (603)
T ss_pred             cEEEEEecCccceeEEEEec--CCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence            999987653    3455555  444444   58899999999999998776 8999999999999986556667788899


Q ss_pred             CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec---CCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311          497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  573 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  573 (1102)
                      ...|+++.|  ++||.++++.+.||.|.+||-.+++....+.   .|.+.|.+++|+||+                    
T Consensus       190 skFV~~VRy--sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs--------------------  247 (603)
T KOG0318|consen  190 SKFVNCVRY--SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS--------------------  247 (603)
T ss_pred             ccceeeEEE--CCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC--------------------
Confidence            999999998  4667899999999999999999998888776   566666666666655                    


Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccc
Q 001311          574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDA  652 (1102)
Q Consensus       574 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  652 (1102)
                       ..+++++.|.+++|||+.+.+++.++...... .....+-|.  ...|++.+.+|+|.+++...+ ...+.+.+|...+
T Consensus       248 -~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~-~~~~~i~GHnK~I  323 (603)
T KOG0318|consen  248 -TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDP-SVLKVISGHNKSI  323 (603)
T ss_pred             -ceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCC-Chhheecccccce
Confidence             47999999999999999999999988754331 112234454  668999999999999999998 4889999998765


Q ss_pred             cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccccc
Q 001311          653 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  732 (1102)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~  732 (1102)
                      ..                                         ...++++.++++++.||.|.-|+...+....      
T Consensus       324 Ta-----------------------------------------Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~~------  356 (603)
T KOG0318|consen  324 TA-----------------------------------------LTVSPDGKTIYSGSYDGHINSWDSGSGTSDR------  356 (603)
T ss_pred             eE-----------------------------------------EEEcCCCCEEEeeccCceEEEEecCCccccc------
Confidence            42                                         2235678999999999999999998754332      


Q ss_pred             CCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEE
Q 001311          733 LPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  812 (1102)
Q Consensus       733 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l  812 (1102)
                      +.+..|...|.+++.+..+. +++++-|.++++.++....+...                 ..+.       ......++
T Consensus       357 ~~g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~-----------------~~~~-------lg~QP~~l  411 (603)
T KOG0318|consen  357 LAGKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKS-----------------EVVK-------LGSQPKGL  411 (603)
T ss_pred             cccccccceEEEEeecCCCc-EEEEecCCeEEEEecccCccccc-----------------ceee-------cCCCceeE
Confidence            22245999999999988776 88888888999877632211100                 0000       23344589


Q ss_pred             EEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee--eeecccc
Q 001311          813 ALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHS  890 (1102)
Q Consensus       813 ~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--~~l~~h~  890 (1102)
                      +..+|+.+++.+.++.|.+..-.+  .+.+.. ..-...+++++| ++..+|+|++||.|+||.+..+++.  ..+..|.
T Consensus       412 av~~d~~~avv~~~~~iv~l~~~~--~~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~  487 (603)
T KOG0318|consen  412 AVLSDGGTAVVACISDIVLLQDQT--KVSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR  487 (603)
T ss_pred             EEcCCCCEEEEEecCcEEEEecCC--cceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence            999999888888877776665222  222222 334578999999 9999999999999999999876543  3567799


Q ss_pred             ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcC
Q 001311          891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETT  969 (1102)
Q Consensus       891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~  969 (1102)
                      ++|+++++|||+.+||++...+.+.+||+.+.+... ....   -|.   ..|.+++|+|+.+++|++ -|..|.||+++
T Consensus       488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~-~~w~---FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKT-NRWA---FHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             CCceEEEECCCCcEEEEeccCCcEEEEEcccCceec-ceee---eee---eeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            999999999999999999999999999999976522 1122   233   379999999999999995 89999999998


Q ss_pred             CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311          970 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus       970 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
                      .-... .....+|...|+.+.|- |...+++.+.|..|++|++.
T Consensus       561 kP~~~-i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  561 KPAKH-IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             Chhhh-eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence            75444 23335788889999998 45568888999999999874

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.3e-49  Score=419.77  Aligned_cols=612  Identities=14%  Similarity=0.208  Sum_probs=445.6

Q ss_pred             CeeEEEEe-cCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311          348 SPMSMDFH-PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  426 (1102)
Q Consensus       348 ~v~~v~~s-pdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  426 (1102)
                      .+..+..+ ..|+++.+++  -..|.+||+.+|+.....                 +...-...|+|++-+||.-+||+|
T Consensus        23 N~~~~~~~~~~Gr~va~~a--~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVG   83 (888)
T KOG0306|consen   23 NINFVVKRSGKGRAVAVSA--LEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVG   83 (888)
T ss_pred             ceeEEEeecCCCcEEEEec--cccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEE
Confidence            33433333 3588533334  378999999999554320                 122334689999999999999999


Q ss_pred             ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeee
Q 001311          427 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  506 (1102)
Q Consensus       427 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~  506 (1102)
                      ..||.|+||+..++...   .++.||...|+++.|...|.  .|+|||.|+.|.+||+-...-+..+.||...|+..-|.
T Consensus        84 YaDGsVqif~~~s~~~~---~tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~  158 (888)
T KOG0306|consen   84 YADGSVQIFSLESEEIL---ITFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL  158 (888)
T ss_pred             ecCceEEeeccCCCcee---eeecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence            99999999999987543   36899999999999999999  79999999999999999999999999999999987764


Q ss_pred             ecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeE
Q 001311          507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  586 (1102)
Q Consensus       507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  586 (1102)
                        .+..++++.|.|+.|++||+.+..+..+.-.|...+..+++.+                       +.+++++.|+.+
T Consensus       159 --~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~-----------------------~~lvt~~~dse~  213 (888)
T KOG0306|consen  159 --NGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE-----------------------KLLVTAGTDSEL  213 (888)
T ss_pred             --CCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec-----------------------ceEEEEecCCce
Confidence              3347999999999999999999777776666666666666544                       358999999999


Q ss_pred             EEEECCCcc------------eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccc
Q 001311          587 KFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR  654 (1102)
Q Consensus       587 ~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  654 (1102)
                      ++|++....            ...++...+ .+....+...++++++++-+.|..+.++.+.+..+..+.+...-.....
T Consensus       214 ~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kk  292 (888)
T KOG0306|consen  214 KVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKK  292 (888)
T ss_pred             EEEEeecccccccccccceeeccceeeecc-CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhh
Confidence            999983110            111121111 1234456677789999999999999999988764433322210000000


Q ss_pred             cCCCCCCCcccchhhhHhhhhccccccccccccccCC-CCCCccccCCC-CccccccCCCccceEecccC-CC-CCcccc
Q 001311          655 TSENSKPTISPISAAAAAAATSAGLADRAASMVSIPG-MNGDVRSLADV-KPRITEESNDKSKVWKLTEL-SE-PNQCRS  730 (1102)
Q Consensus       655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i~~w~~~~~-~~-~~~~~~  730 (1102)
                      ... .. . ...+...+....-    .+...+....- -.-+....... ..++. -.++++..+.++.. .. +...+.
T Consensus       293 ka~-t~-e-~~~~v~~sl~~~i----~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~  364 (888)
T KOG0306|consen  293 KAE-TE-E-NEDDVEKSLSDEI----KRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRT  364 (888)
T ss_pred             hcc-cc-c-cccchhhhHHHHH----HHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCcccccc
Confidence            000 00 0 0000000000000    00000000000 00011111111 22333 45577777777652 11 122222


Q ss_pred             ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311          731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  810 (1102)
Q Consensus       731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~  810 (1102)
                      -.+...+|...|.+++|+.+...+++ +.++.+++|+.                      .+.+.++..     ....+.
T Consensus       365 ~~i~~~GHR~dVRsl~vS~d~~~~~S-ga~~SikiWn~----------------------~t~kciRTi-----~~~y~l  416 (888)
T KOG0306|consen  365 SNIEIGGHRSDVRSLCVSSDSILLAS-GAGESIKIWNR----------------------DTLKCIRTI-----TCGYIL  416 (888)
T ss_pred             ceeeeccchhheeEEEeecCceeeee-cCCCcEEEEEc----------------------cCcceeEEe-----ccccEE
Confidence            22333669999999999999875444 44567888875                      344433321     234788


Q ss_pred             EEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-----ceeee
Q 001311          811 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----DEVKS  884 (1102)
Q Consensus       811 ~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~~~~~  884 (1102)
                      +..|-|.++++++|. .|.+.+||+.+...+.+.++|.+.|..++.+| |++.+++|+.|.+|++||+.-     +...+
T Consensus       417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k  495 (888)
T KOG0306|consen  417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKK  495 (888)
T ss_pred             EEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccce
Confidence            899999999999999 89999999999999999999999999999999 999999999999999999853     11111


Q ss_pred             eec-------cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          885 KLK-------GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       885 ~l~-------~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      .+.       .-.+.|.|+.+||||++||.+=-|.+|+||-+++-+     +.-.+.||..   +|.++.+|||++++++
T Consensus       496 ~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK-----FflsLYGHkL---PV~smDIS~DSklivT  567 (888)
T KOG0306|consen  496 VLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK-----FFLSLYGHKL---PVLSMDISPDSKLIVT  567 (888)
T ss_pred             eeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-----eeeeeccccc---ceeEEeccCCcCeEEe
Confidence            111       134679999999999999999999999999999843     4556678876   9999999999999999


Q ss_pred             E-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcc
Q 001311          958 V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1036 (1102)
Q Consensus       958 ~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v 1036 (1102)
                      + .|+.|+||-++-|.|.+.+.  +|.+.|.++.|-|+..++++++.|+.|+-||-+..+.+..+.       +|+.. |
T Consensus       568 gSADKnVKiWGLdFGDCHKS~f--AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~-------~H~~e-v  637 (888)
T KOG0306|consen  568 GSADKNVKIWGLDFGDCHKSFF--AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLD-------GHHSE-V  637 (888)
T ss_pred             ccCCCceEEeccccchhhhhhh--cccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeec-------cchhe-e
Confidence            5 99999999999999999987  889999999999999999999999999999999999998887       66666 8


Q ss_pred             cceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1037 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1037 ~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      +  +++-+| +|.+++++|.|.+|++|.-..
T Consensus       638 ~--cLav~~-~G~~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  638 W--CLAVSP-NGSFVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             e--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence            8  777778 689999999999999999765

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-46  Score=401.61  Aligned_cols=547  Identities=15%  Similarity=0.232  Sum_probs=423.2

Q ss_pred             eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC
Q 001311          350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  429 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  429 (1102)
                      -.+.|++||..++..  ..+.|-|+|+.+++...                   ..-.+...|.+++.||+|.+|++....
T Consensus        18 Gnl~ft~dG~sviSP--vGNrvsv~dLknN~S~T-------------------l~~e~~~NI~~ialSp~g~lllavdE~   76 (893)
T KOG0291|consen   18 GNLVFTKDGNSVISP--VGNRVSVFDLKNNKSYT-------------------LPLETRYNITRIALSPDGTLLLAVDER   76 (893)
T ss_pred             CcEEECCCCCEEEec--cCCEEEEEEccCCccee-------------------EEeecCCceEEEEeCCCceEEEEEcCC
Confidence            457899999874433  34899999998765432                   234567899999999999999999999


Q ss_pred             CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC--------eeeEEeecCCCCeE
Q 001311          430 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--------AKQYIFEGHEAPVY  501 (1102)
Q Consensus       430 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~--------~~~~~~~~h~~~v~  501 (1102)
                      |...+-++.....+..   + .-..+|.||.|||||+  +++.|. .+.+.||.....        ...+++.||-..|.
T Consensus        77 g~~~lvs~~~r~Vlh~---f-~fk~~v~~i~fSPng~--~fav~~-gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~  149 (893)
T KOG0291|consen   77 GRALLVSLLSRSVLHR---F-NFKRGVGAIKFSPNGK--FFAVGC-GNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDIT  149 (893)
T ss_pred             CcEEEEecccceeeEE---E-eecCccceEEECCCCc--EEEEEe-cceeEEEecCcchhcccCcceEeeeecCCcccee
Confidence            9998888876543331   2 2457899999999999  455444 568999986532        22457789999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe--eeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR--VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      ++.|+  .|.++|++||.|-++++|+++..+..  ..+.+|...|....                     |..+...+++
T Consensus       150 si~Ws--~DSr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~Vvacf---------------------F~~~~~~l~t  206 (893)
T KOG0291|consen  150 SIDWS--DDSRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACF---------------------FGANSLDLYT  206 (893)
T ss_pred             EEEec--cCCceEEeccccceEEEEEeccccccceEeccCCCcceEEEE---------------------eccCcceEEE
Confidence            99995  45589999999999999999876653  33444444444444                     4444456999


Q ss_pred             EeCCCeEEEEECCC-----------------------cce-----EE----EEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311          580 AGDDFSIKFWDMDS-----------------------VQL-----LT----SIDADGGLPASPRIRFNKDGCLLAVSTND  627 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~-----------------------~~~-----~~----~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  627 (1102)
                      .+.||.+.+|....                       ++.     ..    ..-.......+++.+|++.-..|++|-..
T Consensus       207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss  286 (893)
T KOG0291|consen  207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS  286 (893)
T ss_pred             EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence            99999999998761                       111     00    00011122467888899988899999999


Q ss_pred             CcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcccc
Q 001311          628 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT  707 (1102)
Q Consensus       628 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  707 (1102)
                      |...+|.+..- .+++.+.                                                             
T Consensus       287 G~f~LyelP~f-~lih~LS-------------------------------------------------------------  304 (893)
T KOG0291|consen  287 GEFGLYELPDF-NLIHSLS-------------------------------------------------------------  304 (893)
T ss_pred             CeeEEEecCCc-eEEEEee-------------------------------------------------------------
Confidence            98888887554 3333221                                                             


Q ss_pred             ccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC-ceEEeeeccccccCCCCcccccccce
Q 001311          708 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQ  786 (1102)
Q Consensus       708 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~  786 (1102)
                                                   ....+|..++|+..|.+++.++.. |.+.||+++.+.+             
T Consensus       305 -----------------------------is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-------------  342 (893)
T KOG0291|consen  305 -----------------------------ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-------------  342 (893)
T ss_pred             -----------------------------cccceeeEEEecccCCEEEEcCCccceEEEEEeeccce-------------
Confidence                                         133578899999999999999886 9999999754322             


Q ss_pred             eccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEE
Q 001311          787 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI  865 (1102)
Q Consensus       787 ~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las  865 (1102)
                                  .+...+|...+.+++++|||+++|+|+ ||.|+|||..++-|..+|..|++.|+++.|+. .++.+++
T Consensus       343 ------------VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~-~g~~lls  409 (893)
T KOG0291|consen  343 ------------VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTA-RGNVLLS  409 (893)
T ss_pred             ------------eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEe-cCCEEEE
Confidence                        122245999999999999999999999 99999999999999999999999999999999 9999999


Q ss_pred             EeCCCcEEEEEeecceeeeeecccc-ccceeEEEecCCCEEEEEcCCC-cEEEEEcCCCcccceeeeecCCCCCCCCCCC
Q 001311          866 GMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADS-QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD  943 (1102)
Q Consensus       866 g~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v  943 (1102)
                      .+-||+|+.||+...+..+++.... -...|++..|.|..++.|+.|. .|.||++++|+     .+.++.||.   ++|
T Consensus       410 sSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq-----llDiLsGHE---gPV  481 (893)
T KOG0291|consen  410 SSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-----LLDILSGHE---GPV  481 (893)
T ss_pred             eecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe-----eeehhcCCC---Ccc
Confidence            9999999999999999999887543 3356788888899999999886 59999999976     577888887   499


Q ss_pred             cEEEEccCCcEEEE-EeCCeEEEEEcCCc-eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311          944 TRVQFHQDQIHFLV-VHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       944 ~~~~~spdg~~l~~-~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
                      .+++|+|+|..|++ +-|++|++||+-.. ..+.++   .+...++.++|+|||+-|++++.||.|.+||+..+..+..+
T Consensus       482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl---~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~I  558 (893)
T KOG0291|consen  482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL---EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSI  558 (893)
T ss_pred             eeeEEccccCeEEeccccceEEEEEeeccCceeeeE---eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccc
Confidence            99999999999999 48999999998654 233333   34778999999999999999999999999999988887655


Q ss_pred             CCCcccCCC----------CCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC--cccccCC
Q 001311         1022 NPSAYLPAG----------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVPP 1076 (1102)
Q Consensus      1022 ~~~~~~~~g----------h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~ 1076 (1102)
                      ....-+..|          +......-.+++|++ ||..+++|+..+.|.++++.++-  .+|.+..
T Consensus       559 dgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySa-DG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~  624 (893)
T KOG0291|consen  559 DGRKDLSGGRKETDRITAENSAKGKTFTTICYSA-DGKCILAGGESNSICIYDVPEGVLLKKFQISD  624 (893)
T ss_pred             cchhhccccccccceeehhhcccCCceEEEEEcC-CCCEEEecCCcccEEEEECchhheeeeEEecc
Confidence            432222222          122223345899999 79999999999999999999886  4554433

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-50  Score=398.83  Aligned_cols=364  Identities=18%  Similarity=0.240  Sum_probs=299.2

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+.||.++|.|++|+|+|+.||+|+.|.++++||+.+...   .++.++|...|.|++|+|||+  .|++|+.||+|++|
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp---~~t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP---LFTCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW  184 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc---ceeecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence            5889999999999999999999999999999999999764   447899999999999999999  79999999999999


Q ss_pred             eCCCCeee-EEeecCCCCeEEEeeee---cCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311          483 DATNGAKQ-YIFEGHEAPVYSVCPHH---KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       483 d~~~~~~~-~~~~~h~~~v~~v~~~~---~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      |.++|+++ ..|.+|...|++++|.+   .+...+|++++.||.|+|||+..+.++..+.+|...|+++.|-.+|     
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-----  259 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-----  259 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-----
Confidence            99999876 68999999999999864   4566799999999999999999999999999999999999987665     


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                                       ++++++.|++|++|+...|.+...+++|.+  .|+.++++-|- .|-+|..|           
T Consensus       260 -----------------liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lalsTdy-~LRtgaf~-----------  308 (480)
T KOG0271|consen  260 -----------------LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALSTDY-VLRTGAFD-----------  308 (480)
T ss_pred             -----------------eEEecCCCceEEEEEccchhHHHhhcccch--heeeeeccchh-hhhccccc-----------
Confidence                             599999999999999999999999998877  78888876431 11111111           


Q ss_pred             ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311          639 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  718 (1102)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~  718 (1102)
                                                +.+                                            ...+   
T Consensus       309 --------------------------~t~--------------------------------------------~~~~---  315 (480)
T KOG0271|consen  309 --------------------------HTG--------------------------------------------RKPK---  315 (480)
T ss_pred             --------------------------ccc--------------------------------------------ccCC---
Confidence                                      111                                            0000   


Q ss_pred             cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311          719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  798 (1102)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  798 (1102)
                        .   ..+++.-                                                              .+.+ 
T Consensus       316 --~---~se~~~~--------------------------------------------------------------Al~r-  327 (480)
T KOG0271|consen  316 --S---FSEEQKK--------------------------------------------------------------ALER-  327 (480)
T ss_pred             --C---hHHHHHH--------------------------------------------------------------HHHH-
Confidence              0   0000000                                                              0000 


Q ss_pred             ccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311          799 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  876 (1102)
Q Consensus       799 ~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  876 (1102)
                                 +..+.-..+..+++|+ |.++.+|+-.. .+++....+|..-|+.+.||| |++++|+++-|..|++||
T Consensus       328 -----------Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~  395 (480)
T KOG0271|consen  328 -----------YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWD  395 (480)
T ss_pred             -----------HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeee
Confidence                       0001112346788888 68899998654 446778899999999999999 999999999999999999


Q ss_pred             eecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311          877 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  956 (1102)
Q Consensus       877 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  956 (1102)
                      ..+|+.+..|+||-+.|..++|+.|.++|++|+.|.+++||++.+.+.                                
T Consensus       396 g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl--------------------------------  443 (480)
T KOG0271|consen  396 GRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL--------------------------------  443 (480)
T ss_pred             CCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeee--------------------------------
Confidence            999999999999999999999999999999999999999999987331                                


Q ss_pred             EEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          957 VVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       957 ~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                                       ..  ...+|.+.|.++.|+|||..+++|+.|..+++|.
T Consensus       444 -----------------~~--DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  444 -----------------KQ--DLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             -----------------cc--cCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence                             01  1237899999999999999999999999999995

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.2e-47  Score=408.02  Aligned_cols=514  Identities=13%  Similarity=0.208  Sum_probs=404.8

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  423 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  423 (1102)
                      .....|+|++-+||.- +||+|..||.|+||+..+...+.                   .+.||...|+++.|+..|.+|
T Consensus        63 ~~k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~-------------------tfngHK~AVt~l~fd~~G~rl  122 (888)
T KOG0306|consen   63 KKKAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILI-------------------TFNGHKAAVTTLKFDKIGTRL  122 (888)
T ss_pred             cccceEEEeeccCCcc-eEEEEecCceEEeeccCCCceee-------------------eecccccceEEEEEcccCceE
Confidence            3446899999999987 59999999999999999876655                   488999999999999999999


Q ss_pred             EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEE
Q 001311          424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV  503 (1102)
Q Consensus       424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v  503 (1102)
                      |+||.|+.|.|||+-....+.   .+.||.+.|+..-|..+.+  ++++.|.|+.|++||+.+..|..+...|.+.|+++
T Consensus       123 aSGskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l  197 (888)
T KOG0306|consen  123 ASGSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWAL  197 (888)
T ss_pred             eecCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEE
Confidence            999999999999998755333   5999999999999998777  89999999999999999999999999999999999


Q ss_pred             eeeecCCccEEEEEeCCCeEEEEEcCCCCCe--------------eeecCCCCeeeEEEEccCCcee-------------
Q 001311          504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSR--------------VDYEAPGRWCTTMAYSADGTRT-------------  556 (1102)
Q Consensus       504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~--------------~~~~~~~~~v~~~~~s~~~~~~-------------  556 (1102)
                      ++..    +.+++++.|+.+++|++......              ..-...+. ...+...++++.+             
T Consensus       198 ~~~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R-~i~l~~d~s~r~~~c~g~d~~~e~fr  272 (888)
T KOG0306|consen  198 VLDE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR-EINLVTDFSDRFLVCQGADKVIELFR  272 (888)
T ss_pred             EEec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCc-eeEEeecCcccEEEEecchhhhhhee
Confidence            9854    58999999999999998321110              00011111 1112222222200             


Q ss_pred             ----------------------e--------------------eccccCceeEEEEcCCCC---EEEEEeCCCeEEEEEC
Q 001311          557 ----------------------Y--------------------QGFRKRSLGVVQFDTTKN---RFLAAGDDFSIKFWDM  591 (1102)
Q Consensus       557 ----------------------~--------------------~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~iwd~  591 (1102)
                                            .                    .-.....+..+.+.|.++   .|+. -.++++..|.+
T Consensus       273 I~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl  351 (888)
T KOG0306|consen  273 IRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSL  351 (888)
T ss_pred             ecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEe
Confidence                                  0                    000112344566655443   2333 56788888887


Q ss_pred             CC-cc------eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcc
Q 001311          592 DS-VQ------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  664 (1102)
Q Consensus       592 ~~-~~------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1102)
                      .. +.      .+..+...+|...|.+++++.+...+++|. .+.+++|+..+. ++++++.                  
T Consensus       352 ~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~-kciRTi~------------------  411 (888)
T KOG0306|consen  352 ENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTL-KCIRTIT------------------  411 (888)
T ss_pred             ccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCc-ceeEEec------------------
Confidence            65 21      123344455566899999999988777775 479999998877 5555442                  


Q ss_pred             cchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEE
Q 001311          665 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  744 (1102)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~  744 (1102)
                                                                                                .+.+.+
T Consensus       412 --------------------------------------------------------------------------~~y~l~  417 (888)
T KOG0306|consen  412 --------------------------------------------------------------------------CGYILA  417 (888)
T ss_pred             --------------------------------------------------------------------------cccEEE
Confidence                                                                                      236778


Q ss_pred             EEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEE
Q 001311          745 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  824 (1102)
Q Consensus       745 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~  824 (1102)
                      ..|-|.+++++.|..+|.+.+||+..                      ..++.. ..  .|.+.|..++.+||++.+++|
T Consensus       418 ~~Fvpgd~~Iv~G~k~Gel~vfdlaS----------------------~~l~Et-i~--AHdgaIWsi~~~pD~~g~vT~  472 (888)
T KOG0306|consen  418 SKFVPGDRYIVLGTKNGELQVFDLAS----------------------ASLVET-IR--AHDGAIWSISLSPDNKGFVTG  472 (888)
T ss_pred             EEecCCCceEEEeccCCceEEEEeeh----------------------hhhhhh-hh--ccccceeeeeecCCCCceEEe
Confidence            89999999999999999999998732                      221111 11  399999999999999999999


Q ss_pred             e-CCeEEEEEcCC-----Cceeeeec-------CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311          825 S-GGKISLFNMMT-----FKTMATFM-------PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  891 (1102)
Q Consensus       825 s-dg~I~iwd~~~-----~~~~~~~~-------~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  891 (1102)
                      + |.+|++||..-     +...+.+.       .-...|.|+.+|| |+++||++--|.+|+||-+.+-+..-.+.||.-
T Consensus       473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL  551 (888)
T KOG0306|consen  473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL  551 (888)
T ss_pred             cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeeccccc
Confidence            9 99999999741     22212111       1346799999999 999999999999999999999999999999999


Q ss_pred             cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC
Q 001311          892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK  970 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~  970 (1102)
                      +|.||..|||++.++|||.|.+|+||-++-|..     ...+-+|.   .+|+++.|-|...++.+ |.|+.|+-||...
T Consensus       552 PV~smDIS~DSklivTgSADKnVKiWGLdFGDC-----HKS~fAHd---DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k  623 (888)
T KOG0306|consen  552 PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDC-----HKSFFAHD---DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK  623 (888)
T ss_pred             ceeEEeccCCcCeEEeccCCCceEEeccccchh-----hhhhhccc---CceeEEEEcccceeEEEecCcceEEeechhh
Confidence            999999999999999999999999999988764     33344454   38999999999888888 6999999999999


Q ss_pred             ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeE
Q 001311          971 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus       971 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
                      .+.++.+.  +|...|++++.+|+|.+++++|.|.+|++|.-....++
T Consensus       624 Fe~iq~L~--~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  624 FEEIQKLD--GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI  669 (888)
T ss_pred             hhhheeec--cchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence            99999887  89999999999999999999999999999987664443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.2e-45  Score=391.92  Aligned_cols=624  Identities=15%  Similarity=0.184  Sum_probs=418.5

Q ss_pred             eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE--
Q 001311          350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY--  427 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~--  427 (1102)
                      ..++-.|....+..-++  ..|.++|+...++-+                   ++..|..+++|++||++|+|+|+|-  
T Consensus        41 ~gLa~~p~Sgl~aYpAG--CvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEcG   99 (1080)
T KOG1408|consen   41 NGLASVPCSGLCAYPAG--CVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGECG   99 (1080)
T ss_pred             CcccccccccceeeccC--cEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEecccC
Confidence            44555665553233233  689999998766554                   5778889999999999999999974  


Q ss_pred             CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC--CCcEEEEeCCCCeeeEEeecCCCCeEEEee
Q 001311          428 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYSVCP  505 (1102)
Q Consensus       428 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~  505 (1102)
                      ....++||++.....+.   +|..|.-.|+|++|+|.++  ++++.|.  |-.|.+||++.......-+ -...|.+++|
T Consensus       100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnk-iss~Vsav~f  173 (1080)
T KOG1408|consen  100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNK-ISSVVSAVAF  173 (1080)
T ss_pred             CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccc-cceeEEEEEE
Confidence            66789999999876554   5888999999999999999  7777664  4467889887654433222 3456777887


Q ss_pred             eecCCccEEEEEeCCCeEEEEEcCCCCCee---eecCCC-----------------Ce---eeEEEEccCCc-------e
Q 001311          506 HHKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPG-----------------RW---CTTMAYSADGT-------R  555 (1102)
Q Consensus       506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~-----------------~~---v~~~~~s~~~~-------~  555 (1102)
                        +.+|.|+++.+. ..|++|.++...+..   .+.+..                 ..   -.+.+++..|.       +
T Consensus       174 --sEdgSYfvT~gn-rHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRR  250 (1080)
T KOG1408|consen  174 --SEDGSYFVTSGN-RHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRR  250 (1080)
T ss_pred             --ccCCceeeeeee-eeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhh
Confidence              577789999885 899999988655221   011100                 00   02233334332       1


Q ss_pred             e---eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC----------------------CCCCCcC
Q 001311          556 T---YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------------GGLPASP  610 (1102)
Q Consensus       556 ~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------~~~~~v~  610 (1102)
                      +   +...+...-.|++++.  +++++|+.+|.|++|+..+-....++...                      .......
T Consensus       251 LLDKWVqcRTTnAnCIcVs~--r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~I  328 (1080)
T KOG1408|consen  251 LLDKWVQCRTTNANCICVSS--RLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAI  328 (1080)
T ss_pred             hhhhhhhhhccccceeeeec--ceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCcee
Confidence            1   1122233444555554  68999999999999998876554444311                      1122345


Q ss_pred             eEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001311          611 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  690 (1102)
Q Consensus       611 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1102)
                      .+.|++....|.+...|..+++||+++-.+.-+....   .                                       
T Consensus       329 A~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~---l---------------------------------------  366 (1080)
T KOG1408|consen  329 ACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM---L---------------------------------------  366 (1080)
T ss_pred             EEEecCCCceEEEEEcCceEEEEeccccccccceeee---e---------------------------------------
Confidence            6789999999999999999999999876332211100   0                                       


Q ss_pred             CCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311          691 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  770 (1102)
Q Consensus       691 ~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~  770 (1102)
                                          -..-.+|+++.....-           |...-   +.-|.+. +++++.|++|++|++..
T Consensus       367 --------------------yHS~ciW~Ve~~p~nv-----------~~~~~---aclp~~c-F~TCSsD~TIRlW~l~~  411 (1080)
T KOG1408|consen  367 --------------------YHSACIWDVENLPCNV-----------HSPTA---ACLPRGC-FTTCSSDGTIRLWDLAF  411 (1080)
T ss_pred             --------------------eccceeeeeccccccc-----------cCccc---ccCCccc-eeEecCCCcEEEeeccc
Confidence                                0122344444321100           00000   0111222 45555555555555433


Q ss_pred             cccCCC--Ccccccc--cc--------eeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCC
Q 001311          771 TERNSS--GKATASV--AP--------QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF  837 (1102)
Q Consensus       771 ~~~~~~--~~~~~~~--~~--------~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~  837 (1102)
                      ......  ...+...  ++        .+-|...+..-............+++++++|+|++||+|. .|.++||++...
T Consensus       412 ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l  491 (1080)
T KOG1408|consen  412 CTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQEL  491 (1080)
T ss_pred             ccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhh
Confidence            110000  0000000  00        0000000000000000112466799999999999999999 799999999999


Q ss_pred             ceeeeecCCCCCeeEEEEecC--CCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccceeEEEecCC--CEEEEEcCCC
Q 001311          838 KTMATFMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHAL--NVLVSSGADS  912 (1102)
Q Consensus       838 ~~~~~~~~~~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~--~~l~s~s~Dg  912 (1102)
                      +....+..|..+|.|+.|+-.  ..++||+++.|.-|.|||+.. ..+++++.+|+..|+++.|.-.|  ..++++|.|+
T Consensus       492 ~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADk  571 (1080)
T KOG1408|consen  492 EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK  571 (1080)
T ss_pred             hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence            888899999999999999852  357999999999999999864 56788999999999999999877  7899999999


Q ss_pred             cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeecc-CCCCCCeeEEE
Q 001311          913 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVP-RESSAPITHAT  990 (1102)
Q Consensus       913 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~  990 (1102)
                      .|.+-.....   ....+.....+......+..++..|..+++++ +.|+.|+||++.+|+.++.|.. ++|.+..-.+.
T Consensus       572 simFr~~qk~---~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~  648 (1080)
T KOG1408|consen  572 SIMFRVNQKA---SSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI  648 (1080)
T ss_pred             hhheehhccc---cCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE
Confidence            7765433311   11111112222223357889999999999999 6999999999999999999985 45678888999


Q ss_pred             EcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC-
Q 001311          991 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE- 1069 (1102)
Q Consensus       991 ~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~- 1069 (1102)
                      ..|.|-|||+.+.|.++.++|+-+|+++.+..       ||... |.  .+.|.+ |-+.|++.+.||+|+||.+.... 
T Consensus       649 lDPSgiY~atScsdktl~~~Df~sgEcvA~m~-------GHsE~-VT--G~kF~n-DCkHlISvsgDgCIFvW~lp~~mi  717 (1080)
T KOG1408|consen  649 LDPSGIYLATSCSDKTLCFVDFVSGECVAQMT-------GHSEA-VT--GVKFLN-DCKHLISVSGDGCIFVWKLPLTMI  717 (1080)
T ss_pred             ECCCccEEEEeecCCceEEEEeccchhhhhhc-------Ccchh-ee--eeeecc-cchhheeecCCceEEEEECchhHh
Confidence            99999999999999999999999999998877       65444 55  899999 57899999999999999998743 


Q ss_pred             ----cccccCCCCCCCCCCCCCCCCCCCCCC
Q 001311         1070 ----GKWGVPPPVDNGSTSSMPATPPVGGSG 1096 (1102)
Q Consensus      1070 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1096 (1102)
                          ......+....++.-..|..|.+.+.+
T Consensus       718 i~m~~r~~~lr~rq~~~~~~~pl~p~~p~d~  748 (1080)
T KOG1408|consen  718 IRMVNRNGRLRVRQLEKFIAVPLEPDNPNDA  748 (1080)
T ss_pred             HHHHHHhhHHHHHhccCCcCCCCCCCCCCCC
Confidence                122223334444444455555544443

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-42  Score=369.09  Aligned_cols=576  Identities=14%  Similarity=0.156  Sum_probs=390.6

Q ss_pred             CCccccccccCCCCCcCCCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEe
Q 001311          307 LPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVL  384 (1102)
Q Consensus       307 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~  384 (1102)
                      +|..-..|.|+.+.+.               +......|...++||+||++|+| +|+|.  ..-.++||++.....+. 
T Consensus        54 YpAGCvVVlfn~~~~t---------------Q~hlvnssRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVA-  116 (1080)
T KOG1408|consen   54 YPAGCVVVLFNVDSCT---------------QSHLVNSSRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVA-  116 (1080)
T ss_pred             eccCcEEEEEcccccc---------------hhheecccCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchh-
Confidence            4455566678888862               11223347889999999999997 99986  44579999998877665 


Q ss_pred             eeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC--CCeEEEEEccCCceeeeEEEeeccccCEEEEEEc
Q 001311          385 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS--RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  462 (1102)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~--d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s  462 (1102)
                                        .+..|+..|+|++|+|.++|+++.+.  |..|.+||+.......    -..-...|.+++|+
T Consensus       117 ------------------EfvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fs  174 (1080)
T KOG1408|consen  117 ------------------EFVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFS  174 (1080)
T ss_pred             ------------------hhhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEc
Confidence                              37899999999999999999998765  5678899987654332    22345689999999


Q ss_pred             CCCCeeEEEEecCCCcEEEEeCCCCeeeEE-------------e------------------------ecC---------
Q 001311          463 HPNKQLCVITCGDDKTIKVWDATNGAKQYI-------------F------------------------EGH---------  496 (1102)
Q Consensus       463 ~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~-------------~------------------------~~h---------  496 (1102)
                      .||.  |++|.+ ...|++|.++.++....             +                        .||         
T Consensus       175 EdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRL  251 (1080)
T KOG1408|consen  175 EDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRL  251 (1080)
T ss_pred             cCCc--eeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhh
Confidence            9999  788887 46899999887652110             0                        011         


Q ss_pred             --------CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccC---ce
Q 001311          497 --------EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR---SL  565 (1102)
Q Consensus       497 --------~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~---~i  565 (1102)
                              +...+|+|+    +.++|++|+.+|.|++|+..+..-..++......-..++-..+-..++.+....   ..
T Consensus       252 LDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~  327 (1080)
T KOG1408|consen  252 LDKWVQCRTTNANCICV----SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDA  327 (1080)
T ss_pred             hhhhhhhhccccceeee----ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCce
Confidence                    111223333    236899999999999998877655544432211111111000111222222211   23


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE-cCCCCCCCcCeEEEcC-----------CCCEEEEEECCCcEEEE
Q 001311          566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-DADGGLPASPRIRFNK-----------DGCLLAVSTNDNGIKIL  633 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~~~~s~-----------~~~~l~~~~~dg~i~iw  633 (1102)
                      ..+.|++....|.+...|..++|||++.-..+... ..--|...|+++..-|           -...+++++.|++||+|
T Consensus       328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW  407 (1080)
T KOG1408|consen  328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW  407 (1080)
T ss_pred             eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence            45778989999999999999999999875433211 1111122344443333           12358899999999999


Q ss_pred             EccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001311          634 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  713 (1102)
Q Consensus       634 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  713 (1102)
                      ++..+ .--..+........        .+....                                .++..-+.  .|..
T Consensus       408 ~l~~c-tnn~vyrRNils~~--------l~ki~y--------------------------------~d~~~q~~--~d~~  444 (1080)
T KOG1408|consen  408 DLAFC-TNNQVYRRNILSAN--------LSKIPY--------------------------------EDSTQQIM--HDAS  444 (1080)
T ss_pred             ecccc-cccceeecccchhh--------hhcCcc--------------------------------ccCchhhh--hhcc
Confidence            98763 11111110000000        000000                                00000000  0000


Q ss_pred             cceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCc
Q 001311          714 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  793 (1102)
Q Consensus       714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~  793 (1102)
                      .-++|-..       ..    .......+.+++++|+|++|++|..-|.++||++..-..                    
T Consensus       445 ~~~fdka~-------~s----~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~--------------------  493 (1080)
T KOG1408|consen  445 AGIFDKAL-------VS----TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY--------------------  493 (1080)
T ss_pred             CCcccccc-------hh----hcCcccceEEEEECCCcceecccCccCceEEEEehhhhh--------------------
Confidence            00111000       00    012456799999999999999999999999999743111                    


Q ss_pred             cccccccCCCCCCCCeeEEEEec---CCCeEEEEe-CCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCC--cEEEEE
Q 001311          794 IMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDN--NIIAIG  866 (1102)
Q Consensus       794 ~~~~~~~~~~~~~~~i~~l~~s~---d~~~las~s-dg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~--~~lasg  866 (1102)
                           ......|+..|.|+.|+.   ..++||+++ |.-|.|||+. ....+.++.+|...|+++.|.- .|  ..++++
T Consensus       494 -----~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~-~gln~~Misc  567 (1080)
T KOG1408|consen  494 -----TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC-NGLNRKMISC  567 (1080)
T ss_pred             -----hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee-cCCceEEEec
Confidence                 011123999999999984   347899999 8999999986 4556788999999999999987 44  678888


Q ss_pred             eCCCcEEEEEeecceeeeeeccc-----cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCC
Q 001311          867 MDDSSIQIYNVRVDEVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  941 (1102)
Q Consensus       867 ~~dg~v~vwd~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  941 (1102)
                      +.|..|.+--..+......+..|     ...+..|+..|..+++++++.|+.|+||++++++.     .+.+.+.....+
T Consensus       568 GADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq-----~k~FKgs~~~eG  642 (1080)
T KOG1408|consen  568 GADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQ-----VKSFKGSRDHEG  642 (1080)
T ss_pred             cCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccce-----eeeecccccCCC
Confidence            89988776443321112222222     24688999999999999999999999999999875     334445555556


Q ss_pred             CCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311          942 SDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       942 ~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      ....+...|.|.|+|+ +.|+++.++|.-+|+++....  ||+..|+.+.|++|.+.|++++.||.|+||.+...
T Consensus       643 ~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~--GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~  715 (1080)
T KOG1408|consen  643 DLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT--GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT  715 (1080)
T ss_pred             ceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhc--CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence            7889999999999999 599999999999999998877  99999999999999999999999999999998754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=9.6e-38  Score=339.82  Aligned_cols=589  Identities=14%  Similarity=0.146  Sum_probs=432.1

Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCe
Q 001311          352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  431 (1102)
Q Consensus       352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  431 (1102)
                      ..+..-|+.++++.+.+++..+||.+.-..+..                   -..+...|+|++=..+--|.|.|   ..
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~~vy~A~g---~~   96 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKDYVYVASG---NK   96 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCceEEEecC---cE
Confidence            667777777899999999999999988777652                   35677899999876554444443   34


Q ss_pred             EEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-ee----eEEeecCCCCeEEEeee
Q 001311          432 VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AK----QYIFEGHEAPVYSVCPH  506 (1102)
Q Consensus       432 v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~----~~~~~~h~~~v~~v~~~  506 (1102)
                      |.+|.-  |+.++.  .+.+|...|.-+.-  -|.  .++++..++.+.||+..++ ..    +..++...+.|++++ |
T Consensus        97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H  167 (910)
T KOG1539|consen   97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H  167 (910)
T ss_pred             EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence            666543  434433  46678777777653  466  5889999999999998874 22    122233333488775 4


Q ss_pred             ecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeE
Q 001311          507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  586 (1102)
Q Consensus       507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  586 (1102)
                      |+.--+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=                     ..++.|..+|+|
T Consensus       168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaL---------------------DVVaiG~~~G~V  226 (910)
T KOG1539|consen  168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPAL---------------------DVVAIGLENGTV  226 (910)
T ss_pred             chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcc---------------------eEEEEeccCceE
Confidence            55444578999999999999999999998888877777766655533                     458889999999


Q ss_pred             EEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE-EEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCccc
Q 001311          587 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  665 (1102)
Q Consensus       587 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1102)
                      .++|++.++.+..++...  +.|++++|.-||.. +++|+..|.+-+||+............|...              
T Consensus       227 iifNlK~dkil~sFk~d~--g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~s--------------  290 (910)
T KOG1539|consen  227 IIFNLKFDKILMSFKQDW--GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGS--------------  290 (910)
T ss_pred             EEEEcccCcEEEEEEccc--cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCC--------------
Confidence            999999999999998653  36999999999875 5566667999999998873333333233222              


Q ss_pred             chhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEE
Q 001311          666 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  745 (1102)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~  745 (1102)
                                                 .....+.+....+++++.|+.+++|-.+.+....+  .++.. .+|..+..++
T Consensus       291 ---------------------------v~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR--~LR~R-~GHs~Pp~~i  340 (910)
T KOG1539|consen  291 ---------------------------VTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPR--LLRSR-GGHSAPPSCI  340 (910)
T ss_pred             ---------------------------cccceecCCCceEeeccCCCceeEEEeeCCCCcch--heeec-cCCCCCchhe
Confidence                                       12234556677889999999999998775443322  22221 5799999999


Q ss_pred             EEc-cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC----CCe
Q 001311          746 IFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN----DSY  820 (1102)
Q Consensus       746 ~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d----~~~  820 (1102)
                      .|- .+|..+++++.|++++.+++....++..-...       .....+..+.........-.+|..+++...    -.-
T Consensus       341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~-------~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~N  413 (910)
T KOG1539|consen  341 RFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQL-------HNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDN  413 (910)
T ss_pred             eeeccCcEEEEecccCcchhhhhhhHHHHhHhhccc-------ccccccccccccchhhhcCCcceeeecccchhhhhcc
Confidence            997 78999999999999999887654432211110       001111100000000002234666666532    123


Q ss_pred             EEEEe--CCeEEEEEcCCCce-eeeec-----CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee---ccc
Q 001311          821 VMSAS--GGKISLFNMMTFKT-MATFM-----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL---KGH  889 (1102)
Q Consensus       821 las~s--dg~I~iwd~~~~~~-~~~~~-----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l---~~h  889 (1102)
                      ++++.  +..++.|+.+.... ...+.     .....+++++.++ .|++.+.|+..|.|-+|++.+|-....+   ..|
T Consensus       414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah  492 (910)
T KOG1539|consen  414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH  492 (910)
T ss_pred             eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccc
Confidence            44444  57799999987554 23333     2346799999999 9999999999999999999999888888   589


Q ss_pred             cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEc
Q 001311          890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET  968 (1102)
Q Consensus       890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~  968 (1102)
                      .++|++++...-++.+++++.+|.+++||........    ...-+     .++..+..+.....+++ ..|-.|+++|.
T Consensus       493 ~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~----~l~l~-----~~~~~iv~hr~s~l~a~~~ddf~I~vvD~  563 (910)
T KOG1539|consen  493 KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK----SLRLG-----SSITGIVYHRVSDLLAIALDDFSIRVVDV  563 (910)
T ss_pred             cCceeEEEecCCCceEEEccCcceEEEEecCCcceee----eeccC-----CCcceeeeeehhhhhhhhcCceeEEEEEc
Confidence            9999999998888999999999999999998754211    11112     36788888888888888 48889999999


Q ss_pred             CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311          969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus       969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
                      .+.+.++.+.  +|.+.|++++|||||++|++++.|++||+||+.++.++..+.    +.       .-++++.|+| +|
T Consensus       564 ~t~kvvR~f~--gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~----vd-------~~~~sls~SP-ng  629 (910)
T KOG1539|consen  564 VTRKVVREFW--GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL----VD-------SPCTSLSFSP-NG  629 (910)
T ss_pred             hhhhhhHHhh--ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe----cC-------CcceeeEECC-CC
Confidence            9999999988  899999999999999999999999999999999999998765    22       2245899999 69


Q ss_pred             CEEEEEecC-CcEEEEeccCCC
Q 001311         1049 NEFALGLSD-GGVHVFEPLESE 1069 (1102)
Q Consensus      1049 ~~l~s~~~D-g~v~vW~~~~~~ 1069 (1102)
                      ++|+|...| ..|++|-=.+--
T Consensus       630 D~LAT~Hvd~~gIylWsNkslF  651 (910)
T KOG1539|consen  630 DFLATVHVDQNGIYLWSNKSLF  651 (910)
T ss_pred             CEEEEEEecCceEEEEEchhHh
Confidence            999999999 789999765443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=9.5e-41  Score=336.26  Aligned_cols=285  Identities=18%  Similarity=0.272  Sum_probs=256.9

Q ss_pred             ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311          451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  530 (1102)
Q Consensus       451 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~  530 (1102)
                      |-+.+|..+.|+.|++  .|+|||.+|.++||+..+...+.+|.||...|.++.|+|..++..++||+.||++++|++++
T Consensus       173 gd~rPis~~~fS~ds~--~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSK--HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             cCCCcceeeEeecCCC--eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            4578999999999999  89999999999999999999999999999999999999875567899999999999999999


Q ss_pred             CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcC
Q 001311          531 LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASP  610 (1102)
Q Consensus       531 ~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  610 (1102)
                      ...+..+.+|...|..++|.|+|                     ++|++++.|.+-++||+.++..+....+|.  ..|.
T Consensus       251 e~~l~~l~gH~~RVs~VafHPsG---------------------~~L~TasfD~tWRlWD~~tk~ElL~QEGHs--~~v~  307 (459)
T KOG0272|consen  251 ETPLQDLEGHLARVSRVAFHPSG---------------------KFLGTASFDSTWRLWDLETKSELLLQEGHS--KGVF  307 (459)
T ss_pred             CcchhhhhcchhhheeeeecCCC---------------------ceeeecccccchhhcccccchhhHhhcccc--cccc
Confidence            88888888887766666555555                     589999999999999999998887777664  4899


Q ss_pred             eEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001311          611 RIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  690 (1102)
Q Consensus       611 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1102)
                      +++|.+||.++++|+.|..-+|||++++ ..+..+.                                            
T Consensus       308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtg-r~im~L~--------------------------------------------  342 (459)
T KOG0272|consen  308 SIAFQPDGSLAATGGLDSLGRVWDLRTG-RCIMFLA--------------------------------------------  342 (459)
T ss_pred             eeEecCCCceeeccCccchhheeecccC-cEEEEec--------------------------------------------
Confidence            9999999999999999999999999988 3222221                                            


Q ss_pred             CCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311          691 GMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQR  770 (1102)
Q Consensus       691 ~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~  770 (1102)
                                                                                                      
T Consensus       343 --------------------------------------------------------------------------------  342 (459)
T KOG0272|consen  343 --------------------------------------------------------------------------------  342 (459)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCC
Q 001311          771 TERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA  849 (1102)
Q Consensus       771 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~  849 (1102)
                                                       +|..+|.+++|+|+|..||+|+ |++++|||++....+.++.+|.+-
T Consensus       343 ---------------------------------gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl  389 (459)
T KOG0272|consen  343 ---------------------------------GHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL  389 (459)
T ss_pred             ---------------------------------ccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch
Confidence                                             1677788888888888899988 899999999998999999999999


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311          850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  918 (1102)
                      |+.|.|+|+.|.+|++++.|++++||.-.++.+++.+.||.+.|.++..++|+.+++|++.|+++++|.
T Consensus       390 VS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  390 VSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             hhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999998899999999999999999999999999999999999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=2.7e-40  Score=332.99  Aligned_cols=284  Identities=19%  Similarity=0.307  Sum_probs=257.9

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC--C
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD--G  420 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd--g  420 (1102)
                      ++.+.+|..+.||+|++. ||||+.+|.++||+..++..+.                   .+.||...|.++.|+|.  +
T Consensus       172 ~gd~rPis~~~fS~ds~~-laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKH-LATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             ccCCCcceeeEeecCCCe-EEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence            456789999999999995 9999999999999999987766                   58999999999999995  7


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      ..||+|+.||+|++|++++...+.   .+.+|...|..++|.|+|+  +|+|++.|.+-++||++++..+....||...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence            799999999999999999876555   5899999999999999999  89999999999999999999999999999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .+++|+  +||.+++||+.|..-+|||++++.++..+.+|...|.++.|+|+|.                     .+++|
T Consensus       307 ~~iaf~--~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy---------------------~lATg  363 (459)
T KOG0272|consen  307 FSIAFQ--PDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGY---------------------HLATG  363 (459)
T ss_pred             ceeEec--CCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCce---------------------EEeec
Confidence            999985  5668999999999999999999999999999988888888887774                     69999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  659 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1102)
                      +.|++++|||++..+.+.++..|..  -|..|.|+| .|.+|++++.|++++||...+. .+++.+.             
T Consensus       364 s~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~-~~~ksLa-------------  427 (459)
T KOG0272|consen  364 SSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW-SPLKSLA-------------  427 (459)
T ss_pred             CCCCcEEEeeecccccceecccccc--hhhheEecccCCeEEEEcccCcceeeecCCCc-ccchhhc-------------
Confidence            9999999999999999999887755  799999999 8999999999999999987776 5555443             


Q ss_pred             CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccc
Q 001311          660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  739 (1102)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  739 (1102)
                                                                                                   +|.
T Consensus       428 -----------------------------------------------------------------------------GHe  430 (459)
T KOG0272|consen  428 -----------------------------------------------------------------------------GHE  430 (459)
T ss_pred             -----------------------------------------------------------------------------CCc
Confidence                                                                                         488


Q ss_pred             cceEEEEEccCCceEEEeecCceEEeee
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                      +.|.++.+++|+..+++++.|.++++|.
T Consensus       431 ~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  431 GKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             cceEEEEeccCCceEEEeccCceeeecc
Confidence            8999999999999999999999999995

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.5e-39  Score=306.94  Aligned_cols=290  Identities=19%  Similarity=0.296  Sum_probs=258.1

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +-+|...|.++.|++|.++ +++++.||.++|||..|..+.+-                   +.-....|..++|+|.|+
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~sPSg~  110 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAYSPSGN  110 (343)
T ss_pred             ecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEECCCCC
Confidence            4569999999999999997 99999999999999998877764                   444567999999999999


Q ss_pred             eEEEEECCCeEEEEEccCC--c-eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311          422 LFGVAYSRHIVQIYSYHGG--D-EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  498 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~--~-~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~  498 (1102)
                      ++|+|+-|....||++.+.  + ..+...++.+|.+-+.|+.|.+|+.   |+|++.|.++.+||+++|+.+..|.||.+
T Consensus       111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~g  187 (343)
T KOG0286|consen  111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTG  187 (343)
T ss_pred             eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcc
Confidence            9999999999999999865  2 2344456899999999999998776   99999999999999999999999999999


Q ss_pred             CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      .|.++.+.++ +++.+++|+.|+..++||++.+.....|.+|...|.++.|.|+|.                     -|+
T Consensus       188 DV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~---------------------afa  245 (343)
T KOG0286|consen  188 DVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD---------------------AFA  245 (343)
T ss_pred             cEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC---------------------eee
Confidence            9999998764 678999999999999999999999999999988888887777774                     699


Q ss_pred             EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCC
Q 001311          579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN  658 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  658 (1102)
                      +|++|++.|+||++..+.+..+.......+|++++||..|++|++|..|.++.+||.-.+ +.+..+             
T Consensus       246 tGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L-------------  311 (343)
T KOG0286|consen  246 TGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL-------------  311 (343)
T ss_pred             ecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-------------
Confidence            999999999999999999999987777778999999999999999999999999997666 222222             


Q ss_pred             CCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccc
Q 001311          659 SKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLR  738 (1102)
Q Consensus       659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  738 (1102)
                                                                                                   .+|
T Consensus       312 -----------------------------------------------------------------------------~GH  314 (343)
T KOG0286|consen  312 -----------------------------------------------------------------------------AGH  314 (343)
T ss_pred             -----------------------------------------------------------------------------ecc
Confidence                                                                                         248


Q ss_pred             ccceEEEEEccCCceEEEeecCceEEeee
Q 001311          739 ATKISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                      .++|.++..+|||..+++++-|..++||.
T Consensus       315 eNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  315 ENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CCeeEEEEECCCCcEEEecchhHheeecC
Confidence            89999999999999999999999999994

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=7.8e-37  Score=326.10  Aligned_cols=587  Identities=15%  Similarity=0.177  Sum_probs=401.9

Q ss_pred             ceeeccCCCCeeEEEEecCCC---eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQ---TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  415 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~---~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  415 (1102)
                      ...+-+|...|+|+.|-|+.+   + +++|+.|+.|++|.+.....+...                 .+.+|...+  ++
T Consensus        47 ~t~l~GH~a~VnC~~~l~~s~~~a~-~vsG~sD~~v~lW~l~~~~~~~i~-----------------~~~g~~~~~--~c  106 (764)
T KOG1063|consen   47 VTTLDGHVARVNCVHWLPTSEIVAE-MVSGDSDGRVILWKLRDEYLIKIY-----------------TIQGHCKEC--VC  106 (764)
T ss_pred             EEeccCCccceEEEEEcccccccce-EEEccCCCcEEEEEEeehheEEEE-----------------eecCcceeE--EE
Confidence            333446999999999999887   5 899999999999999844333321                 345565544  44


Q ss_pred             EccCCCeEEEEECCCeEEEEEccCCceeeeEEEeecc--ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC--eeeE
Q 001311          416 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG--AKQY  491 (1102)
Q Consensus       416 ~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~--~~~~  491 (1102)
                      ++.......+.+.|+++.+||.+..+ +.....++--  .---.|+++.++.+..+++.|+.+..|.++.-.++  +.+.
T Consensus       107 v~a~~~~~~~~~ad~~v~vw~~~~~e-~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~  185 (764)
T KOG1063|consen  107 VVARSSVMTCKAADGTVSVWDKQQDE-VFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVA  185 (764)
T ss_pred             EEeeeeEEEeeccCceEEEeecCCCc-eeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEE
Confidence            54444444444789999999995544 1111122211  22235677778666557788888888888875544  3456


Q ss_pred             EeecCCCCeEEEeeeecCC-ccEEEEEeCCCeEEEEEcCCCCCeee------ecC-CCCeeeE----EEEccCCceeeec
Q 001311          492 IFEGHEAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVD------YEA-PGRWCTT----MAYSADGTRTYQG  559 (1102)
Q Consensus       492 ~~~~h~~~v~~v~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~------~~~-~~~~v~~----~~~s~~~~~~~~~  559 (1102)
                      .+.||++.|.+++|..... .-+|+|+|.|..||+|.+.-......      ... ....+..    +.+--.-..++.|
T Consensus       186 el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~G  265 (764)
T KOG1063|consen  186 ELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMG  265 (764)
T ss_pred             EeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcC
Confidence            8899999999999865443 46889999999999998764331110      000 0111111    1111111123445


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EE--EEcC-CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LT--SIDA-DGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  634 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~--~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  634 (1102)
                      |.+ -+.++.|+|.+..|++++.|.++.+|...+..-  +.  .+.. .+......+..|+|++..+++-+..|..++|.
T Consensus       266 HeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWk  344 (764)
T KOG1063|consen  266 HED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWK  344 (764)
T ss_pred             ccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEe
Confidence            554 788899999998999999999999998876532  22  2211 12234578899999999999999999999997


Q ss_pred             ccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCcc
Q 001311          635 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  714 (1102)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  714 (1102)
                      ..+. .                                                                          
T Consensus       345 t~d~-~--------------------------------------------------------------------------  349 (764)
T KOG1063|consen  345 TKDK-T--------------------------------------------------------------------------  349 (764)
T ss_pred             ccCc-c--------------------------------------------------------------------------
Confidence            3222 0                                                                          


Q ss_pred             ceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcc
Q 001311          715 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  794 (1102)
Q Consensus       715 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~  794 (1102)
                       .|....            -..+|...|+.+.|.|.|.+|++.+.|.+-|+|---.       +..      -|.     
T Consensus       350 -~w~~~~------------~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg-------~q~------~wH-----  398 (764)
T KOG1063|consen  350 -FWTQEP------------VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWG-------RQQ------EWH-----  398 (764)
T ss_pred             -ceeecc------------ccccccccceeeeecCCCCEEEEeccccceeeecccc-------ccc------cee-----
Confidence             011000            0045889999999999999999999999999875320       000      011     


Q ss_pred             ccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC--------------------------------------
Q 001311          795 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--------------------------------------  835 (1102)
Q Consensus       795 ~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~--------------------------------------  835 (1102)
                      .+   -...-|...++|++|-+....+++|. ...+|+|+..                                      
T Consensus       399 Ei---aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~  475 (764)
T KOG1063|consen  399 EI---ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF  475 (764)
T ss_pred             ee---cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence            00   11122888889999887555666666 4667888731                                      


Q ss_pred             -----CCc---------------------------------eeeeecCCCCCeeEEEEecCCCcEEEEEeCC-----CcE
Q 001311          836 -----TFK---------------------------------TMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSI  872 (1102)
Q Consensus       836 -----~~~---------------------------------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v  872 (1102)
                           +|.                                 .++.+.||..+|.+++.+| +++++|+++..     ..|
T Consensus       476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI  554 (764)
T KOG1063|consen  476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVI  554 (764)
T ss_pred             ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEE
Confidence                 000                                 0112346778899999999 99999999854     479


Q ss_pred             EEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311          873 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       873 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  952 (1102)
                      ++|+..+...+..+.+|+-.|+.|+|||||++|++++.|+++.+|+.......... ......|.   .-|.++.|+|++
T Consensus       555 ~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde  630 (764)
T KOG1063|consen  555 RLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFR-FACLKAHT---RIIWDCSWSPDE  630 (764)
T ss_pred             EEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhh-hccccccc---eEEEEcccCccc
Confidence            99999999888999999999999999999999999999999999998654433322 12233333   468899999999


Q ss_pred             cEEEE-EeCCeEEEEEcCCc--eEeeeeccCCCCCCeeEEEEcC-----CCcEEEEEeCCCeEEEEEcC-------Ccee
Q 001311          953 IHFLV-VHETQLAIFETTKL--ECVKQWVPRESSAPITHATFSC-----DSQLVYACFLDATVCVFSAA-------NLKL 1017 (1102)
Q Consensus       953 ~~l~~-~~d~~i~iwd~~~~--~~~~~~~~~~h~~~v~~l~~sp-----d~~~l~s~s~Dg~I~vwd~~-------~~~~ 1017 (1102)
                      +++++ +.|+.|.+|.....  +.+..+....++..|+.++|.|     .+..++.|-+.|.|.+|...       .+..
T Consensus       631 ~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~  710 (764)
T KOG1063|consen  631 KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTF  710 (764)
T ss_pred             ceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceee
Confidence            99999 59999999999888  6665555556789999999987     23367889999999999965       1111


Q ss_pred             EEEeCCCcccCCCCCCCcccceEEEecCCC---------CCEEEEEecCCcEEEEecc
Q 001311         1018 RCRINPSAYLPAGVSSSNVHPLVIAAHPQE---------PNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1018 ~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d---------~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      ..........  +|.+. |.  .+.|.|..         ...|++|++|.+++++++.
T Consensus       711 ~~~~~l~~~~--~~~~a-V~--rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  711 NLDTRLCATI--GPDSA-VN--RLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             eecccccccc--ChHHh-hh--eeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            1111111111  22233 55  68888641         2246999999999999874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.3e-36  Score=316.80  Aligned_cols=461  Identities=17%  Similarity=0.257  Sum_probs=347.6

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      ..+++.|.+|.|+|...+ +.++-..|.|.|||.++...+..                   +.-..-+|++..|-+-.++
T Consensus        10 ~~rSdRVKsVd~HPtePw-~la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknW   69 (794)
T KOG0276|consen   10 QSRSDRVKSVDFHPTEPW-ILAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNW   69 (794)
T ss_pred             hccCCceeeeecCCCCce-EEEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccce
Confidence            348999999999999998 66667789999999999887764                   3334568999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCeE
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVY  501 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v~  501 (1102)
                      +++|+.|..|+||+..+++.++   .+..|.+-|.+++..|...  +++|+|+|-+|++||.+.+ .+.++|.||...|.
T Consensus        70 iv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVM  144 (794)
T KOG0276|consen   70 IVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVM  144 (794)
T ss_pred             EEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEE
Confidence            9999999999999999988665   6899999999999999999  8999999999999999865 67899999999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      +++|.|.. .+.++++|.|++|++|.+....+.+++.+|...|.++.+-+.|.                   ..+|++|+
T Consensus       145 qv~fnPkD-~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gd-------------------kpylIsga  204 (794)
T KOG0276|consen  145 QVAFNPKD-PNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGD-------------------KPYLISGA  204 (794)
T ss_pred             EEEecCCC-ccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCC-------------------cceEEecC
Confidence            99998754 47999999999999999999999999999999999999887764                   36899999


Q ss_pred             CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCC
Q 001311          582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  661 (1102)
Q Consensus       582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (1102)
                      +|.+|+|||..+..|++++.+|.+  .|..+.|+|.-..+++|+.||+++||+..+- +....+.               
T Consensus       205 DD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tLn---------------  266 (794)
T KOG0276|consen  205 DDLTIKVWDYQTKSCVQTLEGHTN--NVSFVFFHPELPIIISGSEDGTVRIWNSKTY-KLEKTLN---------------  266 (794)
T ss_pred             CCceEEEeecchHHHHHHhhcccc--cceEEEecCCCcEEEEecCCccEEEecCcce-ehhhhhh---------------
Confidence            999999999999999999998755  7999999999999999999999999987554 2211110               


Q ss_pred             CcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc
Q 001311          662 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  741 (1102)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  741 (1102)
                                                                                                 -...+
T Consensus       267 ---------------------------------------------------------------------------~gleR  271 (794)
T KOG0276|consen  267 ---------------------------------------------------------------------------YGLER  271 (794)
T ss_pred             ---------------------------------------------------------------------------cCCce
Confidence                                                                                       02245


Q ss_pred             eEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeE
Q 001311          742 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  821 (1102)
Q Consensus       742 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l  821 (1102)
                      +.+++-.+.+..++.|..+|.+.+= +                                     ......+.+++.|+.+
T Consensus       272 vW~I~~~k~~~~i~vG~Deg~i~v~-l-------------------------------------greeP~vsMd~~gKIi  313 (794)
T KOG0276|consen  272 VWCIAAHKGDGKIAVGFDEGSVTVK-L-------------------------------------GREEPAVSMDSNGKII  313 (794)
T ss_pred             EEEEeecCCCCeEEEeccCCcEEEE-c-------------------------------------cCCCCceeecCCccEE
Confidence            6666666777777777777776651 1                                     1122334455566544


Q ss_pred             EEEeC--CeEEEE------EcCCCcee----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc
Q 001311          822 MSASG--GKISLF------NMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  889 (1102)
Q Consensus       822 as~sd--g~I~iw------d~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h  889 (1102)
                      -+...  -.+.+-      ++..++.+    +.+-.-.-....++-+| +|+++++|+ ||.-.||..-..+     ..+
T Consensus       314 wa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vcg-dGEyiIyTala~R-----nK~  386 (794)
T KOG0276|consen  314 WAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVCG-DGEYIIYTALALR-----NKA  386 (794)
T ss_pred             EEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEec-CccEEEEEeeehh-----hcc
Confidence            44331  112222      22223221    11111111235678889 898888765 8888888743221     123


Q ss_pred             cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001311          890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETT  969 (1102)
Q Consensus       890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~  969 (1102)
                      .+.-....|++|....++--.++.|+++  +..+..+..  .          .-....+--.|.+|.+..++.+++||..
T Consensus       387 fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi--~----------~~~~~e~i~gg~Llg~~ss~~~~fydW~  452 (794)
T KOG0276|consen  387 FGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSI--R----------PDMSAEGIFGGPLLGVRSSDFLCFYDWE  452 (794)
T ss_pred             cccceeEEEcCCCCeEEEEecCCceEEE--ecceecccc--c----------cccceeeecCCceEEEEeCCeEEEEEcc
Confidence            4556678899998888888778889988  443321110  0          0011222234667777789999999999


Q ss_pred             CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC
Q 001311          970 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1005 (1102)
Q Consensus       970 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg 1005 (1102)
                      +++.++.+..     ....+.|+.+|.+++.++.|.
T Consensus       453 ~~~lVrrI~v-----~~k~v~w~d~g~lVai~~d~S  483 (794)
T KOG0276|consen  453 SGELVRRIEV-----TSKHVYWSDNGELVAIAGDDS  483 (794)
T ss_pred             cceEEEEEee-----ccceeEEecCCCEEEEEecCc
Confidence            9999998753     456789999999998888664

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=2.1e-35  Score=321.62  Aligned_cols=545  Identities=14%  Similarity=0.197  Sum_probs=407.5

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      +.+.|+|++-+.+--| +|.|   ..|.+|--  |+.+..                  +...|...|.-+.  +=|.+++
T Consensus        75 lp~~I~alas~~~~vy-~A~g---~~i~~~~r--gk~i~~------------------~~~~~~a~v~~l~--~fGe~li  128 (910)
T KOG1539|consen   75 LPDKITALASDKDYVY-VASG---NKIYAYAR--GKHIRH------------------TTLLHGAKVHLLL--PFGEHLI  128 (910)
T ss_pred             CCCceEEEEecCceEE-EecC---cEEEEEEc--cceEEE------------------EeccccceEEEEe--eecceEE
Confidence            7789999987666432 3322   56777763  433332                  4667777777665  3489999


Q ss_pred             EEECCCeEEEEEccCC-ceeeeEEEe-eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311          425 VAYSRHIVQIYSYHGG-DEVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  502 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~-~~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~  502 (1102)
                      ++..++.+.||+..++ +......++ ....+.|+++.- |.----.++.|+.+|.+.+|++++++.+++++++...|++
T Consensus       129 a~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~  207 (910)
T KOG1539|consen  129 AVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITA  207 (910)
T ss_pred             EEEccCcEEEEEeccccccccccceeeeccCCceeeEec-chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeE
Confidence            9999999999999884 221111122 222233777653 4421114888999999999999999999999999999999


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      +.-  ++--+.++.|..+|+|.+++++..+.+..+....+.|++++|..||.                    ..+++++.
T Consensus       208 ieq--sPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~--------------------p~las~~~  265 (910)
T KOG1539|consen  208 IEQ--SPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGN--------------------PLLASGRS  265 (910)
T ss_pred             ecc--CCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCC--------------------eeEEeccC
Confidence            874  44446899999999999999999999999988888899999998887                    45788888


Q ss_pred             CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC---ccceeecccccccccccCCCC
Q 001311          583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG---IRLLRTFENLAYDASRTSENS  659 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~  659 (1102)
                      .|.+.+||++..+.+..+.. .+...+....|.|....+++.+.|+.+++|-..++   .+.++.-.||..+..      
T Consensus       266 ~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~------  338 (910)
T KOG1539|consen  266 NGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPS------  338 (910)
T ss_pred             CceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCch------
Confidence            99999999998888777652 22447889999999999999999999998865543   234555566665533      


Q ss_pred             CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCC-----
Q 001311          660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLP-----  734 (1102)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~-----  734 (1102)
                        .+..++                                ..+..+.+++.|++.+.+++........+-.+...     
T Consensus       339 --~irfy~--------------------------------~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk  384 (910)
T KOG1539|consen  339 --CIRFYG--------------------------------SQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKK  384 (910)
T ss_pred             --heeeec--------------------------------cCcEEEEecccCcchhhhhhhHHHHhHhhccccccccccc
Confidence              222222                                35677889999999998887654332222210000     


Q ss_pred             ------CcccccceEEEEEccC-----CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCC
Q 001311          735 ------ENLRATKISRLIFTNS-----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  803 (1102)
Q Consensus       735 ------~~~~~~~i~~~~~s~~-----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  803 (1102)
                            ..-.-.+|..+++...     .+.+.+.-.+..++.|++....                   .|+.....-...
T Consensus       385 ~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-------------------~G~~~L~~~~~~  445 (910)
T KOG1539|consen  385 VNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-------------------SGRHVLDPKRFK  445 (910)
T ss_pred             ccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-------------------cccEEecCcccc
Confidence                  0112345666666542     2333333345778888864321                   111110000000


Q ss_pred             CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      .....+++++.++.|++.+.|. .|.|.+|++++|-....+   ..|.++|+.++... -++.+++++.+|.+.+||+.+
T Consensus       446 ~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~  524 (910)
T KOG1539|consen  446 KDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKK  524 (910)
T ss_pred             ccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCC
Confidence            1346789999999999999998 899999999999888888   58999999999988 788999999999999999998


Q ss_pred             ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E
Q 001311          880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V  958 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~  958 (1102)
                      ..++..+.- ...++++..+.....++.+..|-.|+++|+.+.+     ....+.||..   .|++++|||||++|++ +
T Consensus       525 k~l~~~l~l-~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-----vvR~f~gh~n---ritd~~FS~DgrWlisas  595 (910)
T KOG1539|consen  525 KVLKKSLRL-GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-----VVREFWGHGN---RITDMTFSPDGRWLISAS  595 (910)
T ss_pred             cceeeeecc-CCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-----hhHHhhcccc---ceeeeEeCCCCcEEEEee
Confidence            887777763 4567888888888999999999999999998844     4556667764   9999999999999999 5


Q ss_pred             eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-CeEEEEE
Q 001311          959 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFS 1011 (1102)
Q Consensus       959 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-g~I~vwd 1011 (1102)
                      .|++|++||+.++.++..+..   ..+++++.|||+|.+||++..| .-|++|-
T Consensus       596 mD~tIr~wDlpt~~lID~~~v---d~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  596 MDSTIRTWDLPTGTLIDGLLV---DSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             cCCcEEEEeccCcceeeeEec---CCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            899999999999999988754   6799999999999999999999 5699996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1e-36  Score=291.13  Aligned_cols=256  Identities=21%  Similarity=0.300  Sum_probs=217.6

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +-+|++.|+.++..+.+..++++++.|.+|.+|++.......-              ...+.+.||...|..++.++||+
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G--------------~~~r~~~GHsH~v~dv~~s~dg~   76 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG--------------VPVRRLTGHSHFVSDVVLSSDGN   76 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC--------------ceeeeeeccceEecceEEccCCc
Confidence            3459999999999999888999999999999999876422211              11125889999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC--CCC
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH--EAP  499 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h--~~~  499 (1102)
                      +.++++.|+++++||+.+|+..+   .|.||...|.+++|++|++  .++||+.|++|++|++. |.+..++..+  .+.
T Consensus        77 ~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~W  150 (315)
T KOG0279|consen   77 FALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREW  150 (315)
T ss_pred             eEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCCcCc
Confidence            99999999999999999997555   4889999999999999999  59999999999999965 4555555433  789


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      |.+++|+|..+..+|++++.|++|++||+++-+....+.+|.+.++.++++|||.                     ..++
T Consensus       151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGs---------------------lcas  209 (315)
T KOG0279|consen  151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGS---------------------LCAS  209 (315)
T ss_pred             EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCC---------------------EEec
Confidence            9999999988778999999999999999999888888888887777777777765                     6888


Q ss_pred             EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311          580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  643 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  643 (1102)
                      |+.||.+.+||++.++.+..+...   ..|.+++|+|+..+|+.+.. ..|+|||+.++ ..+.
T Consensus       210 Ggkdg~~~LwdL~~~k~lysl~a~---~~v~sl~fspnrywL~~at~-~sIkIwdl~~~-~~v~  268 (315)
T KOG0279|consen  210 GGKDGEAMLWDLNEGKNLYSLEAF---DIVNSLCFSPNRYWLCAATA-TSIKIWDLESK-AVVE  268 (315)
T ss_pred             CCCCceEEEEEccCCceeEeccCC---CeEeeEEecCCceeEeeccC-CceEEEeccch-hhhh
Confidence            999999999999999998888643   36999999999888887765 46999999887 4443

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=2.2e-35  Score=303.20  Aligned_cols=533  Identities=19%  Similarity=0.230  Sum_probs=384.9

Q ss_pred             CCCccccCCccccccccCCCCCcCCCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCC--------eE
Q 001311          300 GISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--------DI  371 (1102)
Q Consensus       300 ~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~--------~i  371 (1102)
                      --+.|+.+++++..|.|+...+                ..+..++|+..|.|++.+||.-. +++|...|        .|
T Consensus        74 lptgE~vyfvA~V~Vl~n~ee~----------------~Qr~y~GH~ddikc~~vHPdri~-vatGQ~ag~~g~~~~phv  136 (626)
T KOG2106|consen   74 LPTGELVYFVAAVGVLYNWEER----------------SQRHYLGHNDDIKCMAVHPDRIR-VATGQGAGTSGRPLQPHV  136 (626)
T ss_pred             ccCccEEEEeccEEEEEeehhh----------------hcccccCCCCceEEEeecCCcee-eccCcccccCCCcCCCee
Confidence            3456676888888888877664                24557889999999999999874 88887666        49


Q ss_pred             EEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CCCeEEEE--ECCCeEEEEEccCCceeeeEE
Q 001311          372 GLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVA--YSRHIVQIYSYHGGDEVRQHL  447 (1102)
Q Consensus       372 ~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~--~~d~~v~vwd~~~~~~~~~~~  447 (1102)
                      +|||..+-..++                   ++..-...|.|++||+  .|.+|+..  +.+..+.|||+..+...... 
T Consensus       137 riWdsv~L~TL~-------------------V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~v-  196 (626)
T KOG2106|consen  137 RIWDSVTLSTLH-------------------VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPV-  196 (626)
T ss_pred             eecccccceeee-------------------eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcc-
Confidence            999988777766                   3555667899999999  45566654  45677999999987765543 


Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE---eecC-CCCeEEEeeeecCCccEEEEEeCCCeE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---FEGH-EAPVYSVCPHHKENIQFIFSTALDGKI  523 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~---~~~h-~~~v~~v~~~~~~~~~~l~s~s~dg~i  523 (1102)
                        ..-++.|..+.|.|.+.. ++++++ .+.+.+|+++.+...+.   +.++ ...|.|++|.+  +| -+++|..+|.|
T Consensus       197 --k~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~e--ng-dviTgDS~G~i  269 (626)
T KOG2106|consen  197 --KTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLE--NG-DVITGDSGGNI  269 (626)
T ss_pred             --eeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccCCceEEEeeccccccceEEEEEEEcC--CC-CEEeecCCceE
Confidence              335678999999999986 566666 57999999998876543   4433 25688888854  43 48999999999


Q ss_pred             EEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC
Q 001311          524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  603 (1102)
Q Consensus       524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  603 (1102)
                      .+|+..+.........|.+.|.+++...+|.                      |++|+.|..|..|| ..-+.+...+..
T Consensus       270 ~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt----------------------llSGgKDRki~~Wd-~~y~k~r~~elP  326 (626)
T KOG2106|consen  270 LIWSKGTNRISKQVHAHDGGVFSLCMLRDGT----------------------LLSGGKDRKIILWD-DNYRKLRETELP  326 (626)
T ss_pred             EEEeCCCceEEeEeeecCCceEEEEEecCcc----------------------EeecCccceEEecc-ccccccccccCc
Confidence            9999977665555558888888888888886                      88899999999999 555555555555


Q ss_pred             CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311          604 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  683 (1102)
Q Consensus       604 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1102)
                      ...+.++.++=...+  |++|+..+.|..=.+.++..+..                                        
T Consensus       327 e~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v----------------------------------------  364 (626)
T KOG2106|consen  327 EQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTV----------------------------------------  364 (626)
T ss_pred             hhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEE----------------------------------------
Confidence            555667666544333  77777665554433333311100                                        


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311          684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  763 (1102)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i  763 (1102)
                                                                          .+|.+....++..|+...+++++.|+.+
T Consensus       365 ----------------------------------------------------~gh~delwgla~hps~~q~~T~gqdk~v  392 (626)
T KOG2106|consen  365 ----------------------------------------------------QGHGDELWGLATHPSKNQLLTCGQDKHV  392 (626)
T ss_pred             ----------------------------------------------------EecccceeeEEcCCChhheeeccCcceE
Confidence                                                                3366778889999999999999999999


Q ss_pred             EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee
Q 001311          764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT  842 (1102)
Q Consensus       764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~  842 (1102)
                      ++|+-..               -+|...             -..++.|+.|.|.| .+|.|. .|...+.|.++...+..
T Consensus       393 ~lW~~~k---------------~~wt~~-------------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~  443 (626)
T KOG2106|consen  393 RLWNDHK---------------LEWTKI-------------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI  443 (626)
T ss_pred             EEccCCc---------------eeEEEE-------------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE
Confidence            9997210               122211             35678899999999 888888 89999999998555444


Q ss_pred             ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeeee-ccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          843 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       843 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      -. ...++++++|+| +|.+||+|+.|+.|+||.+..+ ...... +.|..+|+.+.||+|+++|.+.+.|-.|..|...
T Consensus       444 ~~-d~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~  521 (626)
T KOG2106|consen  444 HT-DNEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPS  521 (626)
T ss_pred             Ee-cCCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccc
Confidence            33 478899999999 9999999999999999998753 222222 3344899999999999999999999999999332


Q ss_pred             CCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311          921 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
                      ..+. .              .++..+.|....-.                  .-.......|...|..++-+.+.+++|+
T Consensus       522 ~~~~-~--------------ts~kDvkW~t~~c~------------------lGF~v~g~s~~t~i~a~~rs~~~~~lA~  568 (626)
T KOG2106|consen  522 ECKQ-I--------------TSVKDVKWATYTCT------------------LGFEVFGGSDGTDINAVARSHCEKLLAS  568 (626)
T ss_pred             cCcc-c--------------ceecceeeeeeEEE------------------EEEEEecccCCchHHHhhhhhhhhhhhc
Confidence            2111 0              01223333211110                  0001111356778888999999999999


Q ss_pred             EeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311         1001 CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1001 ~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                      |.+.|+|++|...--+....+.    .-.+|.+. +.  .++|...| ..+++.+.|.+|..|++
T Consensus       569 gdd~g~v~lf~yPc~s~rA~~h----e~~ghs~~-vt--~V~Fl~~d-~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  569 GDDFGKVHLFSYPCSSPRAPSH----EYGGHSSH-VT--NVAFLCKD-SHLISTGKDTSIMQWRL  625 (626)
T ss_pred             cccCceEEEEccccCCCcccce----eeccccce-eE--EEEEeeCC-ceEEecCCCceEEEEEe
Confidence            9999999999987655543322    22244444 44  89999866 45555559999999997

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=8.6e-36  Score=304.42  Aligned_cols=349  Identities=19%  Similarity=0.335  Sum_probs=280.0

Q ss_pred             CCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCC--CeeEEeeeeeeeccCCCCccccccc-cC----CC
Q 001311          335 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAAL-VK----DP  407 (1102)
Q Consensus       335 ~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~h  407 (1102)
                      ++....+.+.|..+|.+.+|+|-..-++++|+.|-+.++|++..  .......            .+...+ ..    .-
T Consensus       167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~------------~lrh~~~~~~~s~~~  234 (524)
T KOG0273|consen  167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL------------VLRHCIREGGKSVPS  234 (524)
T ss_pred             ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh------------hhhhhhhhhcccCCc
Confidence            56667778889999999999998876799999999999999864  1111100            000000 11    12


Q ss_pred             CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001311          408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  487 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~  487 (1102)
                      ...|++++|+.+|..||+|+.||.++||+...+...    +|..|.++|.++.|+.+|.  +|++++.|+++.+||..+|
T Consensus       235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~----tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIS----TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhh----hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCc
Confidence            357999999999999999999999999999875432    4888999999999999999  8999999999999999999


Q ss_pred             eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311          488 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  567 (1102)
Q Consensus       488 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  567 (1102)
                      ...+.+.-|..+-..+.|-. .  .                                                       
T Consensus       309 ~~~q~f~~~s~~~lDVdW~~-~--~-------------------------------------------------------  330 (524)
T KOG0273|consen  309 TVKQQFEFHSAPALDVDWQS-N--D-------------------------------------------------------  330 (524)
T ss_pred             eEEEeeeeccCCccceEEec-C--c-------------------------------------------------------
Confidence            99888887877644454421 1  1                                                       


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311          568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                              .|++.+.|+.|+++.+....++.++.+|.  ..|.++.|.|.|.+|++++.|++++||+.... .....+  
T Consensus       331 --------~F~ts~td~~i~V~kv~~~~P~~t~~GH~--g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~-~~~~~l--  397 (524)
T KOG0273|consen  331 --------EFATSSTDGCIHVCKVGEDRPVKTFIGHH--GEVNALKWNPTGSLLASCSDDGTLKIWSMGQS-NSVHDL--  397 (524)
T ss_pred             --------eEeecCCCceEEEEEecCCCcceeeeccc--CceEEEEECCCCceEEEecCCCeeEeeecCCC-cchhhh--
Confidence                    25666666777777777777888888754  48999999999999999999999999987655 222222  


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311          648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  727 (1102)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~  727 (1102)
                                                                                                      
T Consensus       398 --------------------------------------------------------------------------------  397 (524)
T KOG0273|consen  398 --------------------------------------------------------------------------------  397 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311          728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  807 (1102)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  807 (1102)
                              .+|...|..+.|+|.|..                                 .|++                 
T Consensus       398 --------~~Hskei~t~~wsp~g~v---------------------------------~~n~-----------------  419 (524)
T KOG0273|consen  398 --------QAHSKEIYTIKWSPTGPV---------------------------------TSNP-----------------  419 (524)
T ss_pred             --------hhhccceeeEeecCCCCc---------------------------------cCCC-----------------
Confidence                    237778888889888751                                 0000                 


Q ss_pred             CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311          808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  886 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l  886 (1102)
                              .++..+++++ |++|++||+..+.++.+|..|..+|.+++|+| +++++|+|+.||.|.+|+.+++++++..
T Consensus       420 --------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l~~s~  490 (524)
T KOG0273|consen  420 --------NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKLVKSY  490 (524)
T ss_pred             --------cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchheeEee
Confidence                    1344566666 99999999999999999999999999999999 9999999999999999999999999988


Q ss_pred             ccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          887 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       887 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      .+ .+.|..|+|+.+|..|..+-.|+.+++-|+.
T Consensus       491 ~~-~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  491 QG-TGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cC-CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            75 4559999999999999999999999999874

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5e-37  Score=334.88  Aligned_cols=275  Identities=18%  Similarity=0.277  Sum_probs=228.9

Q ss_pred             CCCCccceeecc-CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEe---eeeeee---------ccCCCCccc
Q 001311          333 EDLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---RNFKVW---------DLGACSMPL  399 (1102)
Q Consensus       333 ~~~~~~~~~~~~-h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~---~~~~~~---------~~~~~~~~~  399 (1102)
                      ..++..+..++. -...++|..||+|++ ++|.|-.|..|++|.+...+....   ..+.-.         ++.......
T Consensus       364 ~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~  442 (707)
T KOG0263|consen  364 NSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSG  442 (707)
T ss_pred             CCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCc
Confidence            344455555555 457899999999999 699999999999999985331110   000000         111112223


Q ss_pred             cccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311          400 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  479 (1102)
Q Consensus       400 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i  479 (1102)
                      ....+.||.++|..++|+|+.++|++++.|++|++|.+.+..++.   .+.||..+|+++.|+|-|-  +++|+|.|++.
T Consensus       443 ~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~tA  517 (707)
T KOG0263|consen  443 TSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQTA  517 (707)
T ss_pred             eeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCcee
Confidence            334588999999999999999999999999999999999987665   4779999999999999998  89999999999


Q ss_pred             EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      ++|......+++.+.||.+.|.|+.|+|+.  .|+++||.|.+||+||+.++..+..+.+|.+.|.+++|+|+|      
T Consensus       518 rLWs~d~~~PlRifaghlsDV~cv~FHPNs--~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~G------  589 (707)
T KOG0263|consen  518 RLWSTDHNKPLRIFAGHLSDVDCVSFHPNS--NYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCG------  589 (707)
T ss_pred             eeeecccCCchhhhcccccccceEEECCcc--cccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCC------
Confidence            999999999999999999999999997554  799999999999999999988887777777666666666655      


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                                     .+|++|++||.|.+||+.+++.+..+.+|  .+.|.++.|+.||..|++|+.|.+|++||+...
T Consensus       590 ---------------r~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  590 ---------------RYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             ---------------ceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence                           58999999999999999999999999877  558999999999999999999999999998654

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.5e-34  Score=313.63  Aligned_cols=491  Identities=17%  Similarity=0.260  Sum_probs=347.0

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      .+..|..++|+|...+ +.++-..|.|++||..-+..+..                   +..|.++|..++|+|++.+++
T Consensus         8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV   67 (1202)
T KOG0292|consen    8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV   67 (1202)
T ss_pred             ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence            5678999999999997 77888889999999998888763                   889999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  504 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~  504 (1102)
                      +|+.|..|+||+.++.+++-   ++.||-+-|..+.|.+.-.  .++|+|+|.+|+||++.+++++..+.||...|.|..
T Consensus        68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq  142 (1202)
T KOG0292|consen   68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ  142 (1202)
T ss_pred             ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence            99999999999999977654   6999999999999999888  899999999999999999999999999999999999


Q ss_pred             eeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCC-CCeeeEEE-----E-ccCC--ceeeeccccCceeEEEEcCCCC
Q 001311          505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP-GRWCTTMA-----Y-SADG--TRTYQGFRKRSLGVVQFDTTKN  575 (1102)
Q Consensus       505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~-----~-s~~~--~~~~~~~~~~~i~~~~~~~~~~  575 (1102)
                      |++..  ..++|+|.|.+||+||+...+....-.+. ........     | .+|.  +.++.||. ..+..++|+|.-.
T Consensus       143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD-RGVNwaAfhpTlp  219 (1202)
T KOG0292|consen  143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD-RGVNWAAFHPTLP  219 (1202)
T ss_pred             cCCcc--ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc-cccceEEecCCcc
Confidence            98876  58999999999999999764433222110 00000000     0 0011  14455554 4788899999999


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccccc
Q 001311          576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  655 (1102)
Q Consensus       576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  655 (1102)
                      .+++|++|..|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+... ..++.++.        
T Consensus       220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-t~v~tfrr--------  290 (1202)
T KOG0292|consen  220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-TSVQTFRR--------  290 (1202)
T ss_pred             eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc-cceeeeec--------
Confidence            999999999999999976654333334455668999999999999999999999999998765 34443321        


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311          656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  735 (1102)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  735 (1102)
                                                                                                      
T Consensus       291 --------------------------------------------------------------------------------  290 (1202)
T KOG0292|consen  291 --------------------------------------------------------------------------------  290 (1202)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                        ..++...++..|..+ |++++.|+-+.+|.++.                                   +.++.++   
T Consensus       291 --endRFW~laahP~lN-LfAAgHDsGm~VFkleR-----------------------------------Erpa~~v---  329 (1202)
T KOG0292|consen  291 --ENDRFWILAAHPELN-LFAAGHDSGMIVFKLER-----------------------------------ERPAYAV---  329 (1202)
T ss_pred             --cCCeEEEEEecCCcc-eeeeecCCceEEEEEcc-----------------------------------cCceEEE---
Confidence              335667788889998 45555665666776521                                   2233333   


Q ss_pred             cCCCeEEEEeCCeEEEEEcCCCce--eeeecCC---CCCeeEEEEecCCCcEEEEEeC-CCcEEEEEeecceeee-eec-
Q 001311          816 KNDSYVMSASGGKISLFNMMTFKT--MATFMPP---PPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKS-KLK-  887 (1102)
Q Consensus       816 ~d~~~las~sdg~I~iwd~~~~~~--~~~~~~~---~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~-~l~-  887 (1102)
                       +++.|...-|..|+.+|+.+.+.  +..++..   ..++.++.|+|..+..|++... +|.--++.+.+..... ..+ 
T Consensus       330 -~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~  408 (1202)
T KOG0292|consen  330 -NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKD  408 (1202)
T ss_pred             -cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchh
Confidence             33445555588999999987443  3334433   3578899999954555554433 3444455554321100 000 


Q ss_pred             c-ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEE
Q 001311          888 G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF  966 (1102)
Q Consensus       888 ~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iw  966 (1102)
                      . ......+ .|-..+++.+---.+..+.+-++.....   +.+...       ..+..+-+..+|.+|.. ....|.+|
T Consensus       409 ~~k~tG~~a-~fvarNrfavl~k~~~~v~ik~l~N~vt---kkl~~~-------~~~~~IF~ag~g~lll~-~~~~v~lf  476 (1202)
T KOG0292|consen  409 VKKGTGEGA-LFVARNRFAVLDKSNEQVVIKNLKNKVT---KKLLLP-------ESTDDIFYAGTGNLLLR-SPDSVTLF  476 (1202)
T ss_pred             hhcCCCCce-EEEEecceEEEEecCcceEEecccchhh---hcccCc-------ccccceeeccCccEEEE-cCCeEEEE
Confidence            0 1111222 3333334444333366677777765221   111111       13455666667766554 45679999


Q ss_pred             EcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          967 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       967 d~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                      |+...+.+..+.    ...|..+.||+|..+++.-+ -.+|.|.+
T Consensus       477 dvQq~~~~~si~----~s~vkyvvws~dm~~vAll~-Kh~i~i~~  516 (1202)
T KOG0292|consen  477 DVQQKKKVGSIK----VSKVKYVVWSNDMSRVALLS-KHTITIAD  516 (1202)
T ss_pred             EeecceEEEEEe----cCceeEEEEcCccchhhhcc-cceEEEEe
Confidence            999999888877    57899999999988766554 34555555

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-35  Score=284.56  Aligned_cols=287  Identities=16%  Similarity=0.282  Sum_probs=241.2

Q ss_pred             eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEE
Q 001311          445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  524 (1102)
Q Consensus       445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~  524 (1102)
                      ...+|+||.+.|.++.|++|.+  .+++++.||.+.|||.-+....+.+.-....|..++|+  |.|+++++|+.|+..-
T Consensus        47 ~rr~LkGH~~Ki~~~~ws~Dsr--~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~s--PSg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   47 TRRTLKGHLNKIYAMDWSTDSR--RIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYS--PSGNFVACGGLDNKCS  122 (343)
T ss_pred             eEEEecccccceeeeEecCCcC--eEEeeccCCeEEEEEcccccceeEEecCceeEEEEEEC--CCCCeEEecCcCceeE
Confidence            3457999999999999999999  79999999999999999999999888888999998885  5558999999999999


Q ss_pred             EEEcCCCC------CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEE
Q 001311          525 AWLYDNLG------SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLT  598 (1102)
Q Consensus       525 ~wd~~~~~------~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  598 (1102)
                      ||++.+..      ....+.+|.+.+.++.|..|+.                      |++++.|.+..+||+++++.+.
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~----------------------ilT~SGD~TCalWDie~g~~~~  180 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH----------------------ILTGSGDMTCALWDIETGQQTQ  180 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCCCc----------------------eEecCCCceEEEEEcccceEEE
Confidence            99998652      2234666777777776666554                      9999999999999999999999


Q ss_pred             EEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001311          599 SIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA  677 (1102)
Q Consensus       599 ~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1102)
                      .+.+|.  ..|.+++++| +++.+++|+-|+..++||++.+ ...+.|.+                              
T Consensus       181 ~f~GH~--gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~-~c~qtF~g------------------------------  227 (343)
T KOG0286|consen  181 VFHGHT--GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG-QCVQTFEG------------------------------  227 (343)
T ss_pred             EecCCc--ccEEEEecCCCCCCeEEecccccceeeeeccCc-ceeEeecc------------------------------
Confidence            998664  4899999999 9999999999999999999888 45444432                              


Q ss_pred             ccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEe
Q 001311          678 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL  757 (1102)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  757 (1102)
                                                                                                      
T Consensus       228 --------------------------------------------------------------------------------  227 (343)
T KOG0286|consen  228 --------------------------------------------------------------------------------  227 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC
Q 001311          758 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT  836 (1102)
Q Consensus       758 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~  836 (1102)
                                                                     |...|.+++|.|+|.-+++|+ |++.++||++.
T Consensus       228 -----------------------------------------------hesDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  228 -----------------------------------------------HESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             -----------------------------------------------cccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence                                                           444555555566666666666 56666666666


Q ss_pred             CceeeeecC--CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcE
Q 001311          837 FKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL  914 (1102)
Q Consensus       837 ~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i  914 (1102)
                      .+.+..+..  ...+|++++||. .|++|..|..|..+.|||.-+++.+..|.+|.++|++|..+|||.-|+||+.|.++
T Consensus       261 D~~~a~ys~~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~l  339 (343)
T KOG0286|consen  261 DQELAVYSHDSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTL  339 (343)
T ss_pred             CcEEeeeccCcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHhe
Confidence            666555542  245799999999 99999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEE
Q 001311          915 CVWS  918 (1102)
Q Consensus       915 ~vwd  918 (1102)
                      +||.
T Consensus       340 riW~  343 (343)
T KOG0286|consen  340 RIWA  343 (343)
T ss_pred             eecC
Confidence            9994

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.5e-34  Score=308.72  Aligned_cols=545  Identities=17%  Similarity=0.242  Sum_probs=384.2

Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC---eEEEEEC
Q 001311          352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS---LFGVAYS  428 (1102)
Q Consensus       352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~---~las~~~  428 (1102)
                      ..|.|.+  ++|.|. ...|.+||..+.....                   .+.||..+|+|+.|-|+.+   ++++|+.
T Consensus        20 ~sw~~~~--~vafGa-~~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s   77 (764)
T KOG1063|consen   20 SSWGPGG--LVAFGA-GPAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS   77 (764)
T ss_pred             ccccccc--eEEecC-CceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence            3455655  355544 4899999987663333                   5899999999999999888   8999999


Q ss_pred             CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCe--eeEEeecCCCCeEEEee
Q 001311          429 RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCP  505 (1102)
Q Consensus       429 d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd~~~~~--~~~~~~~h~~~v~~v~~  505 (1102)
                      |+.|++|.++.. .+.....+.+|...+.|+.  ....   +.++ ..|+++.+||.+..+  +...+.-..+.+..+|+
T Consensus        78 D~~v~lW~l~~~-~~~~i~~~~g~~~~~~cv~--a~~~---~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL  151 (764)
T KOG1063|consen   78 DGRVILWKLRDE-YLIKIYTIQGHCKECVCVV--ARSS---VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCL  151 (764)
T ss_pred             CCcEEEEEEeeh-heEEEEeecCcceeEEEEE--eeee---EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHH
Confidence            999999999943 3455667888776666554  2222   3333 789999999985555  33344333334444443


Q ss_pred             --eecCCccEEEEEeCCCeEEEEEcCCC--CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          506 --HHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       506 --~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                        .+.++.-+++.|+.+..|.++.-...  .....+.+|..+|.+++|...+.                  +.-+|++++
T Consensus       152 ~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~------------------~~~~laS~S  213 (764)
T KOG1063|consen  152 AALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGG------------------DDLLLASSS  213 (764)
T ss_pred             hhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCC------------------CcEEEEecC
Confidence              33333335566677777877755433  33457788999999999876654                  223688899


Q ss_pred             CCCeEEEEECCCcc---------------------eEEEEc--------CCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311          582 DDFSIKFWDMDSVQ---------------------LLTSID--------ADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       582 ~dg~i~iwd~~~~~---------------------~~~~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  632 (1102)
                      .|..||||.+.-+.                     ....+.        ..+|...|.++.|+|.+..|++++.|.++.+
T Consensus       214 QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmii  293 (764)
T KOG1063|consen  214 QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMII  293 (764)
T ss_pred             CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEE
Confidence            99999999874322                     000111        1245668999999999999999999999999


Q ss_pred             EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311          633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  712 (1102)
Q Consensus       633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  712 (1102)
                      |...+..-.-..                                                                    
T Consensus       294 W~pd~~tGiWv~--------------------------------------------------------------------  305 (764)
T KOG1063|consen  294 WKPDENTGIWVD--------------------------------------------------------------------  305 (764)
T ss_pred             EecCCccceEEE--------------------------------------------------------------------
Confidence            975433100000                                                                    


Q ss_pred             ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311          713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  792 (1102)
Q Consensus       713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~  792 (1102)
                      .+|+=.+                .+.........|+|+++.+++-+..|..++|....              ...|... 
T Consensus       306 ~vRlGe~----------------gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~-  354 (764)
T KOG1063|consen  306 VVRLGEV----------------GGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQE-  354 (764)
T ss_pred             EEEeecc----------------cccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeec-
Confidence            0000000                01234567788999999999999999999997211              1123321 


Q ss_pred             ccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311          793 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGM  867 (1102)
Q Consensus       793 ~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~  867 (1102)
                             ....||...|+.++|+|.|++|.+.+ |-+-|+|-.-.    ...+..-+-|...++|++|-+ ....+++|.
T Consensus       355 -------~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgA  426 (764)
T KOG1063|consen  355 -------PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGA  426 (764)
T ss_pred             -------cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecc
Confidence                   11245999999999999999999999 99999987542    223344566888899999998 677888999


Q ss_pred             CCCcEEEEEeec-------------------------------------------ce-----------------------
Q 001311          868 DDSSIQIYNVRV-------------------------------------------DE-----------------------  881 (1102)
Q Consensus       868 ~dg~v~vwd~~~-------------------------------------------~~-----------------------  881 (1102)
                      +...+|+|+...                                           |.                       
T Consensus       427 dEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~E  506 (764)
T KOG1063|consen  427 DEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTE  506 (764)
T ss_pred             cceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChH
Confidence            999999997420                                           00                       


Q ss_pred             ----------eeeeeccccccceeEEEecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEE
Q 001311          882 ----------VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  946 (1102)
Q Consensus       882 ----------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  946 (1102)
                                .++++.||.-.|++++.+|+++++||++...     .|++|+..+...     .+.+.+|..   .|+.+
T Consensus       507 dqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-----~~~L~~HsL---TVT~l  578 (764)
T KOG1063|consen  507 DQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-----VQELEGHSL---TVTRL  578 (764)
T ss_pred             HHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-----hheecccce---EEEEE
Confidence                      1123457889999999999999999998754     489999887543     334556664   89999


Q ss_pred             EEccCCcEEEE-EeCCeEEEEEcCCceEeeeec---cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc--eeEEE
Q 001311          947 QFHQDQIHFLV-VHETQLAIFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--KLRCR 1020 (1102)
Q Consensus       947 ~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~--~~~~~ 1020 (1102)
                      +|||||++|++ +.|+++.+|........ .+.   ...|..-|.++.|+||+.++||+|.|.+|+||....+  +.+.+
T Consensus       579 ~FSpdg~~LLsvsRDRt~sl~~~~~~~~~-e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~  657 (764)
T KOG1063|consen  579 AFSPDGRYLLSVSRDRTVSLYEVQEDIKD-EFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR  657 (764)
T ss_pred             EECCCCcEEEEeecCceEEeeeeecccch-hhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence            99999999999 69999999988543221 111   4589999999999999999999999999999999888  44444


Q ss_pred             eCCCcccCCCCCCCcccceEEEecCCCCC----EEEEEecCCcEEEEecc
Q 001311         1021 INPSAYLPAGVSSSNVHPLVIAAHPQEPN----EFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1021 ~~~~~~~~~gh~~~~v~~~~v~f~p~d~~----~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      +.   .++.   +..|.  .+++.|-+..    .++.|-..|.|.+|+..
T Consensus       658 ~a---~~~~---~~aVT--Av~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  658 FA---CLKF---SLAVT--AVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             hc---hhcc---CCcee--eEEeeccccccccceEEEEecccEEEEEecc
Confidence            32   1111   22255  6666655443    78999999999999976

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.3e-34  Score=300.93  Aligned_cols=466  Identities=18%  Similarity=0.225  Sum_probs=346.5

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      +..|...|.++.|+|...+++++-.+|.|.|||.++...++.   +.-..-+|.+..|-+--.  .+++|++|..|+|++
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks---feV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS---FEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee---eeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            455889999999999999999999999999999999887764   556778999999998777  899999999999999


Q ss_pred             CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      ..+++.++.|..|.+.|.+++.||..  .+++|+|+|-+|++||++.. .+..++.+|.+.|.+++|.|...        
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~--------  153 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDP--------  153 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCc--------
Confidence            99999999999999999999998765  69999999999999999876 46678999999999999998766        


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCCcc
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                                  +.+++++-|++|++|.+.+..+..++++|..  .|+|+.|-+  |..+|++|++|.+|++||..+. .
T Consensus       154 ------------ntFaS~sLDrTVKVWslgs~~~nfTl~gHek--GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk-~  218 (794)
T KOG0276|consen  154 ------------NTFASASLDRTVKVWSLGSPHPNFTLEGHEK--GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK-S  218 (794)
T ss_pred             ------------cceeeeeccccEEEEEcCCCCCceeeecccc--CcceEEeccCCCcceEEecCCCceEEEeecchH-H
Confidence                        6799999999999999999999999987654  899999987  5579999999999999999887 7


Q ss_pred             ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311          641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  720 (1102)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~  720 (1102)
                      ++++++|                                                                         
T Consensus       219 CV~TLeG-------------------------------------------------------------------------  225 (794)
T KOG0276|consen  219 CVQTLEG-------------------------------------------------------------------------  225 (794)
T ss_pred             HHHHhhc-------------------------------------------------------------------------
Confidence            7777655                                                                         


Q ss_pred             cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311          721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  800 (1102)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  800 (1102)
                                       |...|..+.|.|.-..+++|+.||+++||+-.+-                      ++.. .+
T Consensus       226 -----------------Ht~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty----------------------~lE~-tL  265 (794)
T KOG0276|consen  226 -----------------HTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTY----------------------KLEK-TL  265 (794)
T ss_pred             -----------------ccccceEEEecCCCcEEEEecCCccEEEecCcce----------------------ehhh-hh
Confidence                             5667888999999999999999999999975221                      1000 01


Q ss_pred             CCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE-----
Q 001311          801 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY-----  875 (1102)
Q Consensus       801 ~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw-----  875 (1102)
                      .  ..-..+.|++..+.+..+++|.|....+..+-.......+            ++ .|+++-+..  +.|.--     
T Consensus       266 n--~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~vsM------------d~-~gKIiwa~~--~ei~~~~~ks~  328 (794)
T KOG0276|consen  266 N--YGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPAVSM------------DS-NGKIIWAVH--SEIQAVNLKSV  328 (794)
T ss_pred             h--cCCceEEEEeecCCCCeEEEeccCCcEEEEccCCCCceee------------cC-CccEEEEcC--ceeeeeeceec
Confidence            0  1456799999999999999999765555555443333332            22 233332221  111111     


Q ss_pred             ----Eeecceeee----eeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311          876 ----NVRVDEVKS----KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  947 (1102)
Q Consensus       876 ----d~~~~~~~~----~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  947 (1102)
                          ++..|+.+.    .+-.-.-.-..++-+|+|++++.++ ||.-.||..-..+       ...-      +.-....
T Consensus       329 ~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~Vcg-dGEyiIyTala~R-------nK~f------G~~~eFv  394 (794)
T KOG0276|consen  329 GAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCG-DGEYIIYTALALR-------NKAF------GSGLEFV  394 (794)
T ss_pred             cCcccccCCccccchhhhccccccchHHhccCCCCcEEEEec-CccEEEEEeeehh-------hccc------ccceeEE
Confidence                233333221    1111111123467889998887765 7888888643211       1111      2457899


Q ss_pred             EccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcc
Q 001311          948 FHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1026 (1102)
Q Consensus       948 ~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~ 1026 (1102)
                      |++|....++ -+++.|.++  ++.+..+.+....+      +..--.|.+|.. ..++.+++||.++++++.+++    
T Consensus       395 w~~dsne~avRes~~~vki~--knfke~ksi~~~~~------~e~i~gg~Llg~-~ss~~~~fydW~~~~lVrrI~----  461 (794)
T KOG0276|consen  395 WAADSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS------AEGIFGGPLLGV-RSSDFLCFYDWESGELVRRIE----  461 (794)
T ss_pred             EcCCCCeEEEEecCCceEEE--ecceeccccccccc------eeeecCCceEEE-EeCCeEEEEEcccceEEEEEe----
Confidence            9999777777 478899998  77777777664332      111113444544 457789999999999999998    


Q ss_pred             cCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1027 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1027 ~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                               +.+-.+.|+- +|.+++.++ |.+.++..++.
T Consensus       462 ---------v~~k~v~w~d-~g~lVai~~-d~Sfyil~~n~  491 (794)
T KOG0276|consen  462 ---------VTSKHVYWSD-NGELVAIAG-DDSFYILKFNA  491 (794)
T ss_pred             ---------eccceeEEec-CCCEEEEEe-cCceeEEEecH
Confidence                     4455788885 566666665 44556666543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=3.5e-35  Score=290.94  Aligned_cols=339  Identities=17%  Similarity=0.251  Sum_probs=281.8

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+..|++.|.+++.+|+.+++|||+.|....||++.+|+...   .+.+|.+.|+++.|+.||.  +|+||+.+|.|+||
T Consensus        59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~  133 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF  133 (399)
T ss_pred             ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence            488999999999999999999999999999999999998544   5889999999999999999  89999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      +..++.....+......|.=++|++.  +..|+.|+.||.+.+|.+.+......+.+|...+++-.|.|+|+        
T Consensus       134 ~~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK--------  203 (399)
T KOG0296|consen  134 KVSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK--------  203 (399)
T ss_pred             EcccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc--------
Confidence            99999999988766667777889864  47999999999999999998877777788877777777766665        


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  642 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  642 (1102)
                                   +++++..||+|++||+.+++++..+....+ ....++.++..+..++.|..++.+++-+..++ +.+
T Consensus       204 -------------r~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg-KVv  268 (399)
T KOG0296|consen  204 -------------RILTGYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSG-KVV  268 (399)
T ss_pred             -------------eEEEEecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccc-eEE
Confidence                         699999999999999999999999875543 45788999999999999999999998877666 222


Q ss_pred             eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                      ....+....                                                                       
T Consensus       269 ~~~n~~~~~-----------------------------------------------------------------------  277 (399)
T KOG0296|consen  269 NCNNGTVPE-----------------------------------------------------------------------  277 (399)
T ss_pred             EecCCCCcc-----------------------------------------------------------------------
Confidence            211110000                                                                       


Q ss_pred             CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                           +.      ..+..                                                              
T Consensus       278 -----l~------~~~e~--------------------------------------------------------------  284 (399)
T KOG0296|consen  278 -----LK------PSQEE--------------------------------------------------------------  284 (399)
T ss_pred             -----cc------ccchh--------------------------------------------------------------
Confidence                 00      00000                                                              


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001311          803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  881 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  881 (1102)
                        ....|..+.++..-.+.|+|+ ||+|.|||+...+..+.+ .|...|+.+.|-+  ..+|++++.||.|+.||.++|+
T Consensus       285 --~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c-~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~  359 (399)
T KOG0296|consen  285 --LDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC-EHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQ  359 (399)
T ss_pred             --hhhhhhhcccccccchhhcccccceEEEEecccchhheec-cCCCceEEEEEcC--cchheeeccCceEEeeeccccc
Confidence              122344455556666788898 999999999886654444 4888899999987  5789999999999999999999


Q ss_pred             eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          882 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       882 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      ++....||...|.+++++|+.++++|+|.|++.+||++.
T Consensus       360 l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  360 LKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999999999999999999999999999999999999864

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-35  Score=282.60  Aligned_cols=295  Identities=15%  Similarity=0.228  Sum_probs=248.7

Q ss_pred             cccccceEEEEEccC-CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE
Q 001311          736 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  814 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~  814 (1102)
                      .+|.+.|+.++..+. ...+++++.|..+.+|++...                 |.+.|..+.. +.+  |+..|..++.
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~-~~G--HsH~v~dv~~   71 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR-LTG--HSHFVSDVVL   71 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee-eec--cceEecceEE
Confidence            469999999999887 456788889999999998543                 2233433332 334  9999999999


Q ss_pred             ecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc--cc
Q 001311          815 SKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH--SK  891 (1102)
Q Consensus       815 s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h--~~  891 (1102)
                      ++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |++.+++|+.|.+|.+|+... .+..++..+  ++
T Consensus        72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~  149 (315)
T KOG0279|consen   72 SSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLG-VCKYTIHEDSHRE  149 (315)
T ss_pred             ccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecc-cEEEEEecCCCcC
Confidence            99999999999 99999999999999999999999999999999 999999999999999999875 444454433  78


Q ss_pred             cceeEEEecC--CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEc
Q 001311          892 RITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFET  968 (1102)
Q Consensus       892 ~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~  968 (1102)
                      -|.|+.|+|+  ..+|++++.|++|++||+.+.+     ....+.||.   +.++.+.+||||..++++ .||.+.+||+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~---~~v~t~~vSpDGslcasGgkdg~~~LwdL  221 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHS---GYVNTVTVSPDGSLCASGGKDGEAMLWDL  221 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhcccccc---ccEEEEEECCCCCEEecCCCCceEEEEEc
Confidence            9999999998  7899999999999999999854     344555665   489999999999999994 9999999999


Q ss_pred             CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311          969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus       969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
                      +.++.+..+   +|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+.+....+ ......+..++++|++ ||
T Consensus       222 ~~~k~lysl---~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG  295 (315)
T KOG0279|consen  222 NEGKNLYSL---EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG  295 (315)
T ss_pred             cCCceeEec---cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence            999997776   568999999999997666655 46669999999999998887544444 2234457788999999 79


Q ss_pred             CEEEEEecCCcEEEEecc
Q 001311         1049 NEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1049 ~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      ..|++|-.|+.|++|.+.
T Consensus       296 ~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  296 QTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             cEEEeeecCCcEEEEEee
Confidence            999999999999999875

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.2e-35  Score=274.26  Aligned_cols=231  Identities=20%  Similarity=0.294  Sum_probs=192.2

Q ss_pred             eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccC
Q 001311          360 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  439 (1102)
Q Consensus       360 ~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~  439 (1102)
                      -||++++.|.+|++|...+|.+...                   +....+.|+.+.+.||+++||+++. ..|++||+.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S   70 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS   70 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccC-CeeEEEEccC
Confidence            4899999999999999999999874                   5556778999999999999999876 5699999999


Q ss_pred             CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC
Q 001311          440 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL  519 (1102)
Q Consensus       440 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~  519 (1102)
                      +..- +..++.+|.+.|+++.|-.||+  .++|||+||+++|||++...+.+.++ |..+|++++.++..  ..|++|..
T Consensus        71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dq  144 (311)
T KOG0315|consen   71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQ  144 (311)
T ss_pred             CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecC
Confidence            8754 5668999999999999999999  89999999999999999988877776 78999999986544  67999999


Q ss_pred             CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc----
Q 001311          520 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----  595 (1102)
Q Consensus       520 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----  595 (1102)
                      +|.|++||+.+..+...+...                    .+..+.++.+.|+|.+++++...|..++|++-.+.    
T Consensus       145 sg~irvWDl~~~~c~~~liPe--------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~  204 (311)
T KOG0315|consen  145 SGNIRVWDLGENSCTHELIPE--------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE  204 (311)
T ss_pred             CCcEEEEEccCCccccccCCC--------------------CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcccc
Confidence            999999999876544333221                    11256666777777789999999999999997654    


Q ss_pred             --eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          596 --LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       596 --~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                        ++..++.|.  ..+..+.+|||+++|++++.|.+++||+..+.
T Consensus       205 l~P~~k~~ah~--~~il~C~lSPd~k~lat~ssdktv~iwn~~~~  247 (311)
T KOG0315|consen  205 LEPVHKFQAHN--GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF  247 (311)
T ss_pred             ceEhhheeccc--ceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence              334455453  46889999999999999999999999986543

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-35  Score=292.36  Aligned_cols=273  Identities=17%  Similarity=0.280  Sum_probs=238.5

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      ...+.+|...|+.+-|+|+-. ++++++.|++|++||..+++...                   .+.||.+.|..++|+.
T Consensus       101 ~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a  160 (406)
T KOG0295|consen  101 VQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDA  160 (406)
T ss_pred             hhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEec
Confidence            344667999999999999988 69999999999999999998865                   5899999999999999


Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  498 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~  498 (1102)
                      .|++||+++.|-.+++||.++.  ..+.+.+.+|+..|.+++|-|-|.  ++++++.|.+|+.|++.+|.++++|.+|..
T Consensus       161 ~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~e  236 (406)
T KOG0295|consen  161 SGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSE  236 (406)
T ss_pred             CccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchH
Confidence            9999999999999999999873  233346889999999999999998  899999999999999999999999999999


Q ss_pred             CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      .|..+..  ..||.++++++.|.+|++|-+.++.+...+..|...|.+++|.|....--.....+.      ...+.++.
T Consensus       237 wvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~------~~~~~~l~  308 (406)
T KOG0295|consen  237 WVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGS------TNGGQVLG  308 (406)
T ss_pred             hEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCC------CCCccEEE
Confidence            9998885  678899999999999999999999999999999999999999887641100000000      01346889


Q ss_pred             EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311          579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                      +++.|++|++||+.++.++.++.+|..  .|..++|+|.|+||+++.+|+++++||+.+. ++++.+.
T Consensus       309 s~SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~  373 (406)
T KOG0295|consen  309 SGSRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLE  373 (406)
T ss_pred             eecccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccC
Confidence            999999999999999999999998865  8999999999999999999999999999888 5655554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.9e-34  Score=267.73  Aligned_cols=295  Identities=15%  Similarity=0.274  Sum_probs=240.4

Q ss_pred             eEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC--eeeecCCCCeee
Q 001311          468 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCT  545 (1102)
Q Consensus       468 ~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~  545 (1102)
                      .+|+|+|.|.+||+|...+|.|.++++...+.|+.+.+  .+++..|++++. ..||+||+++...  +..+.+|...|+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLei--Tpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt   87 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEI--TPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT   87 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEE--cCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence            48999999999999999999999999988889999997  455577777775 7899999998654  456666666555


Q ss_pred             EEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE
Q 001311          546 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST  625 (1102)
Q Consensus       546 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  625 (1102)
                      ++.|..+|                     +++++|++||+++|||++...+.+.++..   ..|+++..+|+...|++|.
T Consensus        88 aVgF~~dg---------------------rWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~d  143 (311)
T KOG0315|consen   88 AVGFQCDG---------------------RWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGD  143 (311)
T ss_pred             EEEEeecC---------------------eEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeec
Confidence            55555554                     58999999999999999997766666543   4799999999999999999


Q ss_pred             CCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcc
Q 001311          626 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR  705 (1102)
Q Consensus       626 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  705 (1102)
                      .+|.|++||+.+. .+...+                                                            
T Consensus       144 qsg~irvWDl~~~-~c~~~l------------------------------------------------------------  162 (311)
T KOG0315|consen  144 QSGNIRVWDLGEN-SCTHEL------------------------------------------------------------  162 (311)
T ss_pred             CCCcEEEEEccCC-cccccc------------------------------------------------------------
Confidence            9999999998766 111111                                                            


Q ss_pred             ccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccc
Q 001311          706 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP  785 (1102)
Q Consensus       706 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  785 (1102)
                                                 +|+  ....|.++.+.|||++++++.+.|..++|++......           
T Consensus       163 ---------------------------iPe--~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------  202 (311)
T KOG0315|consen  163 ---------------------------IPE--DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------  202 (311)
T ss_pred             ---------------------------CCC--CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------
Confidence                                       111  3367899999999999999999999999998542221           


Q ss_pred             eeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCC-ceeeeecCCCCCeeEEEEecCCCcEE
Q 001311          786 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNII  863 (1102)
Q Consensus       786 ~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~l  863 (1102)
                            +.......++  .|+..+..+.+|||+++||+++ |.+++||+.++. +....+.+|...+..++||. |+.||
T Consensus       203 ------s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~Yl  273 (311)
T KOG0315|consen  203 ------SELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYL  273 (311)
T ss_pred             ------ccceEhhhee--cccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEE
Confidence                  1111111122  2889999999999999999998 999999999988 55677899999999999999 99999


Q ss_pred             EEEeCCCcEEEEEeecceeeeeeccccccceeEEEe
Q 001311          864 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  899 (1102)
Q Consensus       864 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s  899 (1102)
                      ++|+.|+.+++|++..++.++...+|.....|++..
T Consensus       274 vTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  274 VTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            999999999999999999999999999888887764

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.6e-33  Score=279.29  Aligned_cols=331  Identities=15%  Similarity=0.191  Sum_probs=264.1

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      .....|++.|.+++.+|+.+ +++||+.|..-.||+..+++...                   .+.+|++.|+|+.||.|
T Consensus        58 ~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~-------------------eltgHKDSVt~~~Fshd  117 (399)
T KOG0296|consen   58 VTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAG-------------------ELTGHKDSVTCCSFSHD  117 (399)
T ss_pred             eehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCccee-------------------EecCCCCceEEEEEccC
Confidence            33556999999999999777 69999999999999999998766                   48999999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      |.+||||+.+|.|+||+..++.....   +.+--+.|.-+.|.|-+.  +|+.|+.||.+.+|.+.++...+.+.||..+
T Consensus       118 gtlLATGdmsG~v~v~~~stg~~~~~---~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~  192 (399)
T KOG0296|consen  118 GTLLATGDMSGKVLVFKVSTGGEQWK---LDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSP  192 (399)
T ss_pred             ceEEEecCCCccEEEEEcccCceEEE---eecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCC
Confidence            99999999999999999999986654   445567788899999888  8999999999999999999889999999999


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      +++=.|.  ++|+.++++..||+|++|+..++.....+....                    .....++.++..+..++.
T Consensus       193 ct~G~f~--pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--------------------~~~~~~~~~~~~~~~~~~  250 (399)
T KOG0296|consen  193 CTCGEFI--PDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--------------------GLELPCISLNLAGSTLTK  250 (399)
T ss_pred             ccccccc--CCCceEEEEecCceEEEEecCCCceeEEecccc--------------------cCcCCccccccccceeEe
Confidence            9988884  558999999999999999999987776554321                    124445555555667888


Q ss_pred             EeCCCeEEEEECCCcceEEEEcCC------CCCCCcCeE---EEcCCCCEEEEEECCCcEEEEEccCCccceeecccccc
Q 001311          580 AGDDFSIKFWDMDSVQLLTSIDAD------GGLPASPRI---RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  650 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~~~------~~~~~v~~~---~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  650 (1102)
                      |+.++.+++-+..+|+.+....+.      .....+.|+   .++..-.+.|+|+-||+|.|||.... ..         
T Consensus       251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~-~~---------  320 (399)
T KOG0296|consen  251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS-TL---------  320 (399)
T ss_pred             ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc-hh---------
Confidence            889999999988888877766521      011122223   33334445556666666666664322 00         


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311          651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  730 (1102)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~  730 (1102)
                                                                                                      
T Consensus       321 --------------------------------------------------------------------------------  320 (399)
T KOG0296|consen  321 --------------------------------------------------------------------------------  320 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311          731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  810 (1102)
Q Consensus       731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~  810 (1102)
                                                                                       ..  .  ..|...|.
T Consensus       321 -----------------------------------------------------------------R~--~--c~he~~V~  331 (399)
T KOG0296|consen  321 -----------------------------------------------------------------RH--I--CEHEDGVT  331 (399)
T ss_pred             -----------------------------------------------------------------he--e--ccCCCceE
Confidence                                                                             00  0  01677788


Q ss_pred             EEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311          811 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       811 ~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                      .+.|-+ ..+|++++ +|.|+.||.++|+++.++.+|...|.+++++| +.+++++++.|++.+||++.
T Consensus       332 ~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  332 KLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             EEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCeEEEEecC
Confidence            888887 56777777 99999999999999999999999999999999 99999999999999999864

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.7e-34  Score=276.46  Aligned_cols=294  Identities=21%  Similarity=0.345  Sum_probs=242.7

Q ss_pred             cccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311          400 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  479 (1102)
Q Consensus       400 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i  479 (1102)
                      ....+.+|++.|..+.|+|+|.+||+|+.|..|.+|++....  .....+++|++.|..+.|.+|+.  .++++|.|++|
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v  114 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTV  114 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceE
Confidence            334688999999999999999999999999999999976643  23446889999999999999999  79999999999


Q ss_pred             EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      +.||+++|++++.+++|...|++++.. .-+-.++.+++.|+++++||++..+.+.++... .                 
T Consensus       115 ~~wD~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~k-y-----------------  175 (338)
T KOG0265|consen  115 RGWDAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENK-Y-----------------  175 (338)
T ss_pred             EEEecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccccc-e-----------------
Confidence            999999999999999999999998732 334467889999999999999987776654322 2                 


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  639 (1102)
                          .++++.|..++..+.+|+-|+.|++||++.+.....+.+|..  .|+.+..+++|.++.+-+.|.++++||++.-.
T Consensus       176 ----qltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D--tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~  249 (338)
T KOG0265|consen  176 ----QLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD--TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFA  249 (338)
T ss_pred             ----eEEEEEecccccceeeccccCceeeeccccCcceEEeecccC--ceeeEEeccCCCccccccccceEEEEEecccC
Confidence                344455555556799999999999999999999999987755  89999999999999999999999999975320


Q ss_pred             ---cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccce
Q 001311          640 ---RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  716 (1102)
Q Consensus       640 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~  716 (1102)
                         +++..++++.                                                                   
T Consensus       250 p~~R~v~if~g~~-------------------------------------------------------------------  262 (338)
T KOG0265|consen  250 PSQRCVKIFQGHI-------------------------------------------------------------------  262 (338)
T ss_pred             CCCceEEEeecch-------------------------------------------------------------------
Confidence               0111111000                                                                   


Q ss_pred             EecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccc
Q 001311          717 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  796 (1102)
Q Consensus       717 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  796 (1102)
                                           |                                                          
T Consensus       263 ---------------------h----------------------------------------------------------  263 (338)
T KOG0265|consen  263 ---------------------H----------------------------------------------------------  263 (338)
T ss_pred             ---------------------h----------------------------------------------------------
Confidence                                 0                                                          


Q ss_pred             ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          797 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       797 ~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                             +.......++|+|+++.+..|+ |..+++||..+...+..+.+|.+.|.+++|+| ...+|.+++.|.+|++=
T Consensus       264 -------nfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  264 -------NFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYLG  335 (338)
T ss_pred             -------hhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEee
Confidence                   0122244578999999999998 99999999999999999999999999999999 89999999999999874


Q ss_pred             E
Q 001311          876 N  876 (1102)
Q Consensus       876 d  876 (1102)
                      +
T Consensus       336 e  336 (338)
T KOG0265|consen  336 E  336 (338)
T ss_pred             c
Confidence            3

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.3e-35  Score=287.61  Aligned_cols=301  Identities=22%  Similarity=0.327  Sum_probs=266.2

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      -+.+|..+|+.+-|.|+-..+|+++.|++|++||..+|+..+   .++||.+.|..|+|+..|+  ++++++.|-.+++|
T Consensus       103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW  177 (406)
T KOG0295|consen  103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW  177 (406)
T ss_pred             hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence            367899999999999999999999999999999999999754   6999999999999999999  89999999999999


Q ss_pred             eCCC-CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311          483 DATN-GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  561 (1102)
Q Consensus       483 d~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  561 (1102)
                      |..+ -++++.+.+|...|.+++|.+.+  .+|++++.|.+|+.|+++++-++.++.+|..+|..+....||.       
T Consensus       178 d~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGt-------  248 (406)
T KOG0295|consen  178 DFDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGT-------  248 (406)
T ss_pred             eHHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCee-------
Confidence            9887 67888999999999999997664  7999999999999999999999999999998888888877775       


Q ss_pred             cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311          562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  641 (1102)
Q Consensus       562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  641 (1102)
                                    .+++++.|.+|++|-..++++...+..|.+  .|.+++|.|...+  ..     |  .        
T Consensus       249 --------------i~As~s~dqtl~vW~~~t~~~k~~lR~hEh--~vEci~wap~~~~--~~-----i--~--------  295 (406)
T KOG0295|consen  249 --------------IIASCSNDQTLRVWVVATKQCKAELREHEH--PVECIAWAPESSY--PS-----I--S--------  295 (406)
T ss_pred             --------------EEEecCCCceEEEEEeccchhhhhhhcccc--ceEEEEecccccC--cc-----h--h--------
Confidence                          688999999999999999988888887766  6778888775320  00     0  0        


Q ss_pred             eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311          642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  721 (1102)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~  721 (1102)
                                                                                                      
T Consensus       296 --------------------------------------------------------------------------------  295 (406)
T KOG0295|consen  296 --------------------------------------------------------------------------------  295 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311          722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  801 (1102)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  801 (1102)
                                                      -+++                                            
T Consensus       296 --------------------------------~at~--------------------------------------------  299 (406)
T KOG0295|consen  296 --------------------------------EATG--------------------------------------------  299 (406)
T ss_pred             --------------------------------hccC--------------------------------------------
Confidence                                            0000                                            


Q ss_pred             CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                         ...         .++++.+++ |++|++||+.++.++.++.+|.+.|..++|+| +|+||+++.+|++++|||++++
T Consensus       300 ---~~~---------~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~  366 (406)
T KOG0295|consen  300 ---STN---------GGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNL  366 (406)
T ss_pred             ---CCC---------CccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccc
Confidence               000         345788888 99999999999999999999999999999999 9999999999999999999999


Q ss_pred             eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      ++...+..|..-|+++.|..+..+++||+-|.++++|.-
T Consensus       367 ~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  367 QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             eeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            999999999999999999999999999999999999963

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.9e-33  Score=286.00  Aligned_cols=256  Identities=19%  Similarity=0.310  Sum_probs=225.7

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      .+..|++++|+.+|. +||+|+.||.++||+... ..+.                   .+..|.++|.++.|+.+|.||+
T Consensus       234 ~nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G-~l~~-------------------tl~~HkgPI~slKWnk~G~yil  292 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGT-LLATGSEDGEARIWNKDG-NLIS-------------------TLGQHKGPIFSLKWNKKGTYIL  292 (524)
T ss_pred             ccCCcceEEecCCCC-eEEEeecCcEEEEEecCc-hhhh-------------------hhhccCCceEEEEEcCCCCEEE
Confidence            347899999999999 599999999999999764 4433                   5889999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  504 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~  504 (1102)
                      +++.|+++.+||..+|.....   +.-|+.+-..|.|-.+..   +++++.|+.|+|+.+....++.++.||.++|.++.
T Consensus       293 S~~vD~ttilwd~~~g~~~q~---f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk  366 (524)
T KOG0273|consen  293 SGGVDGTTILWDAHTGTVKQQ---FEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALK  366 (524)
T ss_pred             eccCCccEEEEeccCceEEEe---eeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEE
Confidence            999999999999999876543   556888878899988776   89999999999999999999999999999999999


Q ss_pred             eeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC-CCCEEEEEeCC
Q 001311          505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDD  583 (1102)
Q Consensus       505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d  583 (1102)
                      |.  +.|.+|+++|.|+++++|..........+..|...|..+.|+|.|.             +..+| .+..+++++.|
T Consensus       367 ~n--~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~-------------v~~n~~~~~~l~sas~d  431 (524)
T KOG0273|consen  367 WN--PTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP-------------VTSNPNMNLMLASASFD  431 (524)
T ss_pred             EC--CCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCC-------------ccCCCcCCceEEEeecC
Confidence            84  5568999999999999999998899999999999999999999986             22333 34568889999


Q ss_pred             CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeec
Q 001311          584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  645 (1102)
Q Consensus       584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  645 (1102)
                      ++|++||+..+.++..+..|.  .+|.+++|+|+|+++++|+.||.|.+|++.++ +.++..
T Consensus       432 stV~lwdv~~gv~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg~V~iws~~~~-~l~~s~  490 (524)
T KOG0273|consen  432 STVKLWDVESGVPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG-KLVKSY  490 (524)
T ss_pred             CeEEEEEccCCceeEeeccCC--CceEEEEecCCCcEEEecCCCCeeEeccccch-heeEee
Confidence            999999999999999997664  48999999999999999999999999999888 444433

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.6e-33  Score=277.47  Aligned_cols=245  Identities=18%  Similarity=0.297  Sum_probs=216.6

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +.+|.+.|.||++.|-.++ +++|+.|++|.|||+.+|+...                   .+.||...|..+++|+--.
T Consensus       147 i~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~vavS~rHp  206 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGVAVSKRHP  206 (460)
T ss_pred             hhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEE-------------------eecchhheeeeeeecccCc
Confidence            5569999999999999886 9999999999999999998877                   4899999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  501 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~  501 (1102)
                      ||++++.|+.|+-||++..+.++   .+.||-..|.|++..|.-.  +|+||+.|.+++|||+++...+.++.||..+|.
T Consensus       207 YlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~  281 (460)
T KOG0285|consen  207 YLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVA  281 (460)
T ss_pred             eEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCCCcce
Confidence            99999999999999999998777   4789999999999999988  899999999999999999999999999999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      .+.+.+..  ..+++||.|++|++||+..++....+..|...|.+++                     .+|....|++++
T Consensus       282 ~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~---------------------lhP~e~~fASas  338 (460)
T KOG0285|consen  282 SVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALC---------------------LHPKENLFASAS  338 (460)
T ss_pred             eEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEe---------------------cCCchhhhhccC
Confidence            99875433  5799999999999999999888777776666555555                     455555788888


Q ss_pred             CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      .| .|+.|++..|..+..+.++..  -+++++...|+ ++++|+++|.+.+||.+++
T Consensus       339 ~d-nik~w~~p~g~f~~nlsgh~~--iintl~~nsD~-v~~~G~dng~~~fwdwksg  391 (460)
T KOG0285|consen  339 PD-NIKQWKLPEGEFLQNLSGHNA--IINTLSVNSDG-VLVSGGDNGSIMFWDWKSG  391 (460)
T ss_pred             Cc-cceeccCCccchhhccccccc--eeeeeeeccCc-eEEEcCCceEEEEEecCcC
Confidence            77 599999999999988776644  68888888776 6788999999999999988

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.7e-30  Score=276.35  Aligned_cols=505  Identities=13%  Similarity=0.161  Sum_probs=351.8

Q ss_pred             CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeecc-ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311          408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  486 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~  486 (1102)
                      ..+|+++|||.+.+.||.+-.||.|.||++..+=....  .+.++ ...|.+++|++.++   |.+.+.+|.|.-||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence            45899999999999999999999999999998644333  45555 45799999996665   89999999999999999


Q ss_pred             CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311          487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                      ++.+..+....+.|++++.++..  ..++.|+.||.+..++...+......                   .-....+.+.
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r-------------------~l~rq~sRvL  158 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKR-------------------SLMRQKSRVL  158 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEe-------------------ecccccceEE
Confidence            99999999999999999986554  68999999997777766543332211                   1111234666


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc-----CCC-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311          567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                      +++|++++..+++|+.||.|++||..++..+....     ... ...-|.++.|-.+ ..|++|.+.|+|.+||...+ .
T Consensus       159 slsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~g-T  236 (691)
T KOG2048|consen  159 SLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFG-T  236 (691)
T ss_pred             EEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCc-c
Confidence            77777777889999999999999999998776322     111 2223556666644 46888989999999998776 3


Q ss_pred             ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311          641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  720 (1102)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~  720 (1102)
                      +++.+.                                                                          
T Consensus       237 LiqS~~--------------------------------------------------------------------------  242 (691)
T KOG2048|consen  237 LIQSHS--------------------------------------------------------------------------  242 (691)
T ss_pred             hhhhhh--------------------------------------------------------------------------
Confidence            333221                                                                          


Q ss_pred             cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311          721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  800 (1102)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  800 (1102)
                                      .|...|.+++.++++.+++++|.|+.+..|...+....             |-...        
T Consensus       243 ----------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~-------------wv~~~--------  285 (691)
T KOG2048|consen  243 ----------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE-------------WVINS--------  285 (691)
T ss_pred             ----------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccc-------------eeeec--------
Confidence                            26788999999999999999999999888775432110             21111        


Q ss_pred             CCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCee-EEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311          801 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       801 ~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                      ....|...+.+++..++  .+++|+ |.++.+-...............-.-. -+...|  .++|..--.+..+.+|.+.
T Consensus       286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlG  361 (691)
T KOG2048|consen  286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLG  361 (691)
T ss_pred             cccCCcccceeeeeecc--eEEecceeeEEEEccccccCchhhhccccccccceeecCc--cceEEEEeccccccceecc
Confidence            11238889999999888  777777 88887766544221111110000111 122233  3444444556678888876


Q ss_pred             cce---------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311          879 VDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  949 (1102)
Q Consensus       879 ~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  949 (1102)
                      +..         +.+........|.+.+.||||++++.+.-- .++||.+.................   ......+.|+
T Consensus       362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v~~~~~~---~~~a~~i~ft  437 (691)
T KOG2048|consen  362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPNVKVINVDDVPLA---LLDASAISFT  437 (691)
T ss_pred             CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcceeEEEeccchhh---hccceeeEEE
Confidence            641         112122233458999999999999987643 478888876432222222111111   1256788999


Q ss_pred             cCCcEEEE-E-eCCeEEEEEcCCceEe--eeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCc
Q 001311          950 QDQIHFLV-V-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA 1025 (1102)
Q Consensus       950 pdg~~l~~-~-~d~~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 1025 (1102)
                      -|+..++. + ....+.+++..+....  ..+...+-...|..+..|+||+|||+.+.+|.|.+|++++++.......  
T Consensus       438 id~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r--  515 (691)
T KOG2048|consen  438 IDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR--  515 (691)
T ss_pred             ecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhc--
Confidence            88888777 4 6678888887765433  3333333467899999999999999999999999999999887654320  


Q ss_pred             ccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1026 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1026 ~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                       +.       ...+.++|+|.+-+.|+.+..|+.|+-+|++..+
T Consensus       516 -ln-------~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~  551 (691)
T KOG2048|consen  516 -LN-------IDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARN  551 (691)
T ss_pred             -cC-------cceeeeeccccccCcEEEEecCCeEEEEecchhh
Confidence             11       2344888998778889999999999999995554

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=2.4e-31  Score=273.61  Aligned_cols=436  Identities=18%  Similarity=0.249  Sum_probs=324.1

Q ss_pred             CCccceeecc-CCCCeeEEEEecC--CCeEEEEE-ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCC
Q 001311          335 LPKTVTRTLN-QGSSPMSMDFHPV--QQTLLLVG-TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS  410 (1102)
Q Consensus       335 ~~~~~~~~~~-h~~~v~~v~~spd--g~~llasg-~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  410 (1102)
                      ..-...+.++ -...|+||+||+-  |.+|++.- +.+..+-|||+..+.....                   .+..+..
T Consensus       142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~-------------------vk~sne~  202 (626)
T KOG2106|consen  142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGP-------------------VKTSNEV  202 (626)
T ss_pred             ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCc-------------------ceeccce
Confidence            3444455555 5789999999983  55444442 3455789999987766542                   3445678


Q ss_pred             eEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccc-cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee
Q 001311          411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  489 (1102)
Q Consensus       411 V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~  489 (1102)
                      |....|.|.+.-|+.....+.+..|+++++...+....+.+++ .-|.|++|.++|.   ++||..+|.|.||+..+.+.
T Consensus       203 v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd---viTgDS~G~i~Iw~~~~~~~  279 (626)
T KOG2106|consen  203 VFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD---VITGDSGGNILIWSKGTNRI  279 (626)
T ss_pred             EEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC---EEeecCCceEEEEeCCCceE
Confidence            8999999966666666667889999999998887776676654 4799999999998   89999999999999988887


Q ss_pred             eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee--cCCCCeeeEEEEc-----------------
Q 001311          490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY--EAPGRWCTTMAYS-----------------  550 (1102)
Q Consensus       490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s-----------------  550 (1102)
                      .+....|.+.|.+++..  .+| .|++|+.|+.|..|| ..-+.+...  +...+.+..++-.                 
T Consensus       280 ~k~~~aH~ggv~~L~~l--r~G-tllSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt  355 (626)
T KOG2106|consen  280 SKQVHAHDGGVFSLCML--RDG-TLLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGT  355 (626)
T ss_pred             EeEeeecCCceEEEEEe--cCc-cEeecCccceEEecc-ccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEee
Confidence            77777999999999974  444 577799999999999 332333222  2222333333211                 


Q ss_pred             --cCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001311          551 --ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  628 (1102)
Q Consensus       551 --~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  628 (1102)
                        ..-+.+..+|.+ ..+.++.+|+.+.+++++.|+.+++|+  ..+++.+.....   ++.|+.|+|.| .+++|+..|
T Consensus       356 ~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d---~~~~~~fhpsg-~va~Gt~~G  428 (626)
T KOG2106|consen  356 LENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIED---PAECADFHPSG-VVAVGTATG  428 (626)
T ss_pred             ecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecC---ceeEeeccCcc-eEEEeeccc
Confidence              111133344444 788899999999999999999999999  555555554332   47889999999 999999999


Q ss_pred             cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccc
Q 001311          629 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  708 (1102)
Q Consensus       629 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  708 (1102)
                      ...+.|.++. ..+....                                                              
T Consensus       429 ~w~V~d~e~~-~lv~~~~--------------------------------------------------------------  445 (626)
T KOG2106|consen  429 RWFVLDTETQ-DLVTIHT--------------------------------------------------------------  445 (626)
T ss_pred             eEEEEecccc-eeEEEEe--------------------------------------------------------------
Confidence            9999998764 2222110                                                              


Q ss_pred             cCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceec
Q 001311          709 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW  788 (1102)
Q Consensus       709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w  788 (1102)
                                                   ...++..+.|+|+|.+++.++.|+.|++|.++..                 
T Consensus       446 -----------------------------d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~-----------------  479 (626)
T KOG2106|consen  446 -----------------------------DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN-----------------  479 (626)
T ss_pred             -----------------------------cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC-----------------
Confidence                                         2467899999999999999999999999988532                 


Q ss_pred             cCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee--------------e----cCCCCC
Q 001311          789 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--------------F----MPPPPA  849 (1102)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~--------------~----~~~~~~  849 (1102)
                          |....+.-..  +..+|+.+.||+|++++.+-+ |-.|..|..........              |    -.+...
T Consensus       480 ----g~~y~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~  553 (626)
T KOG2106|consen  480 ----GRKYSRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTD  553 (626)
T ss_pred             ----CcEEEEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCch
Confidence                2222111111  458899999999999999998 88999995433222111              1    124456


Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEeecce---eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      |.+++-+. +.+++|+|.+.|.|++|...--+   ...+..+|++-|++++|..+...|++.+.|..|..|++
T Consensus       554 i~a~~rs~-~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  554 INAVARSH-CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             HHHhhhhh-hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            77777777 88999999999999999875432   34567889999999999999889998889999999986

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=8.9e-33  Score=266.92  Aligned_cols=254  Identities=18%  Similarity=0.230  Sum_probs=214.1

Q ss_pred             cceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311          338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       338 ~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      ....+.+|++.|..+.|+|+|.+ +|||+.|..|.+|++.....-.                  ..+++|.+.|..+.|.
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~   99 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSC-FASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGM   99 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCe-EeecCCcceEEEEeccccccce------------------eeeccccceeEeeeec
Confidence            34456789999999999999995 9999999999999975332211                  1478999999999999


Q ss_pred             cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311          418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      +|+..|++++.|.+|+.||.++|++++   .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ..
T Consensus       100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~k  174 (338)
T KOG0265|consen  100 RDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NK  174 (338)
T ss_pred             cCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cc
Confidence            999999999999999999999999877   47889999999997666776 78999999999999999999998886 45


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      -.+++++|.  ..+..+++|+-|+.|++||++.......+.+|...|+.+..+++|                     .++
T Consensus       175 yqltAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g---------------------s~l  231 (338)
T KOG0265|consen  175 YQLTAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG---------------------SFL  231 (338)
T ss_pred             eeEEEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCC---------------------Ccc
Confidence            678888885  444689999999999999999988888888887777777766666                     478


Q ss_pred             EEEeCCCeEEEEECCC----cceEEEEcCCCCCCC--cCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          578 LAAGDDFSIKFWDMDS----VQLLTSIDADGGLPA--SPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ++-+.|.++++||++.    .+++..+.++.+...  ...++|+|++..+.+|+.|..+++||....
T Consensus       232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r  298 (338)
T KOG0265|consen  232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR  298 (338)
T ss_pred             ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc
Confidence            9999999999999874    345777776655433  346889999999999999999999997654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=8e-34  Score=309.94  Aligned_cols=274  Identities=15%  Similarity=0.205  Sum_probs=233.8

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      ....+.|..|++|++.++.+..|..|++|.+...+.                      ..  ++   +..         +
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl----------------------~~--lk---~~~---------~  420 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKL----------------------KK--LK---DAS---------D  420 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhh----------------------cc--cc---chh---------h
Confidence            346789999999999999999999999998732111                      00  00   000         0


Q ss_pred             CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeE
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  896 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l  896 (1102)
                      ...+=+.+ |-.+.+.|-.+....+++.+|.++|..+.|+| +.++|+++++|++||+|.+.+..++-..+||..+|+.+
T Consensus       421 l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV  499 (707)
T KOG0263|consen  421 LSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDV  499 (707)
T ss_pred             hccccccccchhhhhccccCCceeEEeecCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeE
Confidence            11111222 33366677777777788999999999999999 99999999999999999999999999999999999999


Q ss_pred             EEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEee
Q 001311          897 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK  975 (1102)
Q Consensus       897 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~  975 (1102)
                      .|+|-|-|+||++.|++.++|..+..     .++.++.||..   .|.++.|+|++.|++++ .|.+|++||+.+|..++
T Consensus       500 ~F~P~GyYFatas~D~tArLWs~d~~-----~PlRifaghls---DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VR  571 (707)
T KOG0263|consen  500 QFAPRGYYFATASHDQTARLWSTDHN-----KPLRIFAGHLS---DVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVR  571 (707)
T ss_pred             EecCCceEEEecCCCceeeeeecccC-----Cchhhhccccc---ccceEEECCcccccccCCCCceEEEEEcCCCcEEE
Confidence            99999999999999999999998874     35777888875   89999999999999995 89999999999999999


Q ss_pred             eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe
Q 001311          976 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus       976 ~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
                      .|.  ||.++|.+++|||+|++|++|+.||.|.|||+.+++++..+.       +|++. +.  ++.|+. ||..||+|+
T Consensus       572 iF~--GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~-------~Ht~t-i~--SlsFS~-dg~vLasgg  638 (707)
T KOG0263|consen  572 IFT--GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK-------GHTGT-IY--SLSFSR-DGNVLASGG  638 (707)
T ss_pred             Eec--CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh-------cccCc-ee--EEEEec-CCCEEEecC
Confidence            997  899999999999999999999999999999999999998887       66333 77  899999 799999999


Q ss_pred             cCCcEEEEeccCCC
Q 001311         1056 SDGGVHVFEPLESE 1069 (1102)
Q Consensus      1056 ~Dg~v~vW~~~~~~ 1069 (1102)
                      .|++|++||+....
T Consensus       639 ~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  639 ADNSVRLWDLTKVI  652 (707)
T ss_pred             CCCeEEEEEchhhc
Confidence            99999999997655

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.4e-29  Score=269.21  Aligned_cols=547  Identities=14%  Similarity=0.156  Sum_probs=378.0

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCC-CCCeEEEEEccCCCeE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSPDGSLF  423 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~spdg~~l  423 (1102)
                      ....|+|+|||.+.+. ||.+-.||.|.||++..+=...                  .++.++ ...|.+++|+ +|..|
T Consensus        24 ~Ps~I~slA~s~kS~~-lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~~RL   83 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQ-LAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EGGRL   83 (691)
T ss_pred             eccceEEEEEeccCCc-eeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cCCeE
Confidence            3467999999999885 9999999999999998753322                  134444 4689999999 67788


Q ss_pred             EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE--EeecCCCCeE
Q 001311          424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVY  501 (1102)
Q Consensus       424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~--~~~~h~~~v~  501 (1102)
                      .+.+.+|.|.-||+.+++...   .+....+.|++++.+|.++  .++.|+.||.+...+...++...  .|...++.|.
T Consensus        84 FS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL  158 (691)
T KOG2048|consen   84 FSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL  158 (691)
T ss_pred             EeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence            899999999999999987654   4666788999999999999  68999999988888888887764  4455678899


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC--------CCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--------PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  573 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--------~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  573 (1102)
                      ++.|+  +++..|++|+.||.|++||...+........        ....|.++.+..++                    
T Consensus       159 slsw~--~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--------------------  216 (691)
T KOG2048|consen  159 SLSWN--PTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS--------------------  216 (691)
T ss_pred             EEEec--CCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC--------------------
Confidence            99884  5557899999999999999988766541111        11233444444333                    


Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccc
Q 001311          574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  653 (1102)
Q Consensus       574 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  653 (1102)
                        .+++|..-|+|.+||...+.+++.+..+..  .|.+++..+++.++++++.|+.|.-+...+....            
T Consensus       217 --tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~------------  280 (691)
T KOG2048|consen  217 --TIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSE------------  280 (691)
T ss_pred             --cEEEecCCceEEEEcccCcchhhhhhhhhc--ceeEEEEcCCCCeEEEccCCCceEEEEecCCccc------------
Confidence              499999999999999999999999887755  7999999999999999999999988876554221            


Q ss_pred             ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccC
Q 001311          654 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  733 (1102)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~  733 (1102)
                                                                                     |-...            
T Consensus       281 ---------------------------------------------------------------wv~~~------------  285 (691)
T KOG2048|consen  281 ---------------------------------------------------------------WVINS------------  285 (691)
T ss_pred             ---------------------------------------------------------------eeeec------------
Confidence                                                                           10000            


Q ss_pred             CCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee-EE
Q 001311          734 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP-CF  812 (1102)
Q Consensus       734 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~-~l  812 (1102)
                      +...|...|.+++..++  .+++++.|..+.+-.......              .+   ..+.        ...+-. -+
T Consensus       286 ~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~~~--------~~~p~~~~v  338 (691)
T KOG2048|consen  286 RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HRQK--------NLFPASDRV  338 (691)
T ss_pred             cccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hhcc--------cccccccee
Confidence            00237788888988887  689999998887754321000              00   0000        000111 13


Q ss_pred             EEecCCCeEEEEeCCeEEEEEcCCCce---------eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          813 ALSKNDSYVMSASGGKISLFNMMTFKT---------MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       813 ~~s~d~~~las~sdg~I~iwd~~~~~~---------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      ...+..++++.-.+..+.+|.+.+...         .+........|.+.+.|| +|++|+.+.- ..++||.+...-.+
T Consensus       339 ~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~-~~~~iy~L~~~~~v  416 (691)
T KOG2048|consen  339 SVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTV-SRTKIYRLQPDPNV  416 (691)
T ss_pred             ecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeec-cceEEEEeccCcce
Confidence            334555555555578888998866521         122223345699999999 9999998863 46888887652211


Q ss_pred             -----eeeccccccceeEEEecCCCEEEEEc-CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          884 -----SKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       884 -----~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                           .......-.+..+.|+-|+..++.++ .+..+.+.++++........++..    .....|..++.|++|+|+|+
T Consensus       417 k~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~----~~~~~I~~l~~SsdG~yiaa  492 (691)
T KOG2048|consen  417 KVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ----AKCPSISRLVVSSDGNYIAA  492 (691)
T ss_pred             eEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc----cCCCcceeEEEcCCCCEEEE
Confidence                 11222334567889999998888887 677888888877543222111111    23358999999999999999


Q ss_pred             -EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC-CCcEEEEEeCCCeEEEEEcCCceeEEEeCCC--cccCCCCCC
Q 001311          958 -VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPS--AYLPAGVSS 1033 (1102)
Q Consensus       958 -~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~--~~~~~gh~~ 1033 (1102)
                       +..+.|.+|++++++......  .-...|+.++|+| +...|+.+..|+.|+=||++..++ .++...  ..+|.....
T Consensus       493 ~~t~g~I~v~nl~~~~~~~l~~--rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l-~~ws~~nt~nlpk~~~~  569 (691)
T KOG2048|consen  493 ISTRGQIFVYNLETLESHLLKV--RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNL-TRWSKNNTRNLPKEPKT  569 (691)
T ss_pred             EeccceEEEEEcccceeecchh--ccCcceeeeeccccccCcEEEEecCCeEEEEecchhhh-hhhhhccccccccChhh
Confidence             589999999999988755542  1247899999995 566789999999999999954432 211100  001110000


Q ss_pred             CcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311         1034 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1034 ~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      -.-....+.|+|.+...++. -+.+.+.+.|..
T Consensus       570 l~~~~~gisfd~~n~s~~~~-~~a~w~~~id~~  601 (691)
T KOG2048|consen  570 LIPGIPGISFDPKNSSRFIV-YDAHWSCLIDFS  601 (691)
T ss_pred             cCCCCceEEeCCCCccEEEE-EcCcEEEEEecC
Confidence            00112378888865544443 445666666653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-31  Score=286.46  Aligned_cols=449  Identities=16%  Similarity=0.266  Sum_probs=310.1

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      +..-...|..++|+|...++.++-..|.|++||..-+.++.   .|.+|.++|..++|.|+..  +++|||+|..|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence            34456789999999999999999999999999999887766   4889999999999999999  899999999999999


Q ss_pred             CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccC
Q 001311          484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  563 (1102)
Q Consensus       484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  563 (1102)
                      ..+.+|+.++.||.+.|..+.|+..-  .+|+|+|+|.+|++|++.+..++..+.+|.+.|.+..|.|..          
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE----------  147 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE----------  147 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc----------
Confidence            99999999999999999999998655  699999999999999999999999999998877777766644          


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce---------------------------EEEEcCCCCCCCcCeEEEcC
Q 001311          564 SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---------------------------LTSIDADGGLPASPRIRFNK  616 (1102)
Q Consensus       564 ~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---------------------------~~~~~~~~~~~~v~~~~~s~  616 (1102)
                                 ..++++|-|.+||+||+..-+.                           +..+-..+|...|+-++|+|
T Consensus       148 -----------DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp  216 (1202)
T KOG0292|consen  148 -----------DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP  216 (1202)
T ss_pred             -----------ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC
Confidence                       4799999999999999853211                           11111223344677777777


Q ss_pred             CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCc
Q 001311          617 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  696 (1102)
Q Consensus       617 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1102)
                      .-..+++|++|..|++|.....                                                          
T Consensus       217 TlpliVSG~DDRqVKlWrmnet----------------------------------------------------------  238 (1202)
T KOG0292|consen  217 TLPLIVSGADDRQVKLWRMNET----------------------------------------------------------  238 (1202)
T ss_pred             CcceEEecCCcceeeEEEeccc----------------------------------------------------------
Confidence            7777777777777777765332                                                          


Q ss_pred             cccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCC
Q 001311          697 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  776 (1102)
Q Consensus       697 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~  776 (1102)
                                        +.|.+.+      |       .+|.+.|.++.|.|....+++.+.|+.|+|||+...     
T Consensus       239 ------------------KaWEvDt------c-------rgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR-----  282 (1202)
T KOG0292|consen  239 ------------------KAWEVDT------C-------RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR-----  282 (1202)
T ss_pred             ------------------cceeehh------h-------hcccCCcceEEecCccceeEecCCCccEEEEecccc-----
Confidence                              2233332      1       459999999999999999999999999999998432     


Q ss_pred             CcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEe
Q 001311          777 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFH  856 (1102)
Q Consensus       777 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s  856 (1102)
                                     ++...   +..  .....+.++..|..+++|+|.|+.+.||-++.-.          ++.  +.+
T Consensus       283 ---------------t~v~t---frr--endRFW~laahP~lNLfAAgHDsGm~VFkleREr----------pa~--~v~  330 (1202)
T KOG0292|consen  283 ---------------TSVQT---FRR--ENDRFWILAAHPELNLFAAGHDSGMIVFKLERER----------PAY--AVN  330 (1202)
T ss_pred             ---------------cceee---eec--cCCeEEEEEecCCcceeeeecCCceEEEEEcccC----------ceE--EEc
Confidence                           11100   001  4567889999999999999999888888776322          222  333


Q ss_pred             cCCCcEEEEEeCCCcEEEEEeeccee--eeeeccc---cccceeEEEecCCCEE-EEEcCC-CcEEEEEcCCCcccceee
Q 001311          857 PQDNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGH---SKRITGLAFSHALNVL-VSSGAD-SQLCVWSSDGWEKQKNRF  929 (1102)
Q Consensus       857 p~d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h---~~~V~~l~~s~d~~~l-~s~s~D-g~i~vwd~~~~~~~~~~~  929 (1102)
                        ++.++.+  .|..|+-+|+.+.+-  +..++..   ..++.+|.++|-...+ ++...| +.--++.+..........
T Consensus       331 --~n~LfYv--kd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~  406 (1202)
T KOG0292|consen  331 --GNGLFYV--KDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG  406 (1202)
T ss_pred             --CCEEEEE--ccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc
Confidence              3334433  389999999988543  3344432   3678889999875544 443333 333344443311100000


Q ss_pred             eecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311          930 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus       930 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
                      .....+      +=....|-..+++.+.. .+..+.+-++.+... +.+..   ...+..+-+..+|.+|+.  ....|.
T Consensus       407 ~~~~k~------tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vt-kkl~~---~~~~~~IF~ag~g~lll~--~~~~v~  474 (1202)
T KOG0292|consen  407 KDVKKG------TGEGALFVARNRFAVLDKSNEQVVIKNLKNKVT-KKLLL---PESTDDIFYAGTGNLLLR--SPDSVT  474 (1202)
T ss_pred             hhhhcC------CCCceEEEEecceEEEEecCcceEEecccchhh-hcccC---cccccceeeccCccEEEE--cCCeEE
Confidence            000000      00122222222222222 233444444433221 11111   123445556666766553  356799


Q ss_pred             EEEcCCceeEEEeC
Q 001311         1009 VFSAANLKLRCRIN 1022 (1102)
Q Consensus      1009 vwd~~~~~~~~~~~ 1022 (1102)
                      +||++.++.+..+.
T Consensus       475 lfdvQq~~~~~si~  488 (1202)
T KOG0292|consen  475 LFDVQQKKKVGSIK  488 (1202)
T ss_pred             EEEeecceEEEEEe
Confidence            99999999888776

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1e-31  Score=255.84  Aligned_cols=246  Identities=20%  Similarity=0.343  Sum_probs=197.6

Q ss_pred             eeccCCCCeeEEEEecC-CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          341 RTLNQGSSPMSMDFHPV-QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spd-g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      .+-+|.+.|+.++|+|- |. +||+++.|+.|+||+...+.....               ...+-.+|+..|+.++|+|.
T Consensus         9 ~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~   72 (312)
T KOG0645|consen    9 KLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPH   72 (312)
T ss_pred             eecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCC
Confidence            34569999999999998 77 799999999999999985322211               11145689999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---eeeEEeecC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGH  496 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~---~~~~~~~~h  496 (1102)
                      |++||+|+.|.++.||.-..++ +....++.||...|.|++|+++|.  +|+|++.|++|.||.+..+   +++..+++|
T Consensus        73 g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~H  149 (312)
T KOG0645|consen   73 GRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEH  149 (312)
T ss_pred             CcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccc
Confidence            9999999999999999877654 556778999999999999999999  8999999999999998854   567889999


Q ss_pred             CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC---CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311          497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  573 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  573 (1102)
                      +..|..+.|+|..  .+|+++|.|.+|++|+-...   .+..++.++..                     .+.+++|++.
T Consensus       150 tqDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~---------------------TVW~~~F~~~  206 (312)
T KOG0645|consen  150 TQDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN---------------------TVWSLAFDNI  206 (312)
T ss_pred             cccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccc---------------------eEEEEEecCC
Confidence            9999999999877  59999999999999976631   12333444433                     5566666666


Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311          574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       574 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                      |..|++++.|++|+||-+.+.     +. ..+...+..++|.  ...|++++.|+.|+++...
T Consensus       207 G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  207 GSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             CceEEEecCCcceEeeeeccC-----cc-hhcccceEeeeec--ccceEeccCCCEEEEEEec
Confidence            678999999999999986522     11 1223357778887  5579999999999999644

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.3e-33  Score=283.34  Aligned_cols=283  Identities=20%  Similarity=0.324  Sum_probs=241.5

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      +-.|..|.|.|+|+. |++|+..|.+.+|+..+-      +|             +.++..|..+|+++.||++|.++++
T Consensus        96 kc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nF-------------EtilQaHDs~Vr~m~ws~~g~wmiS  155 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NF-------------ETILQAHDSPVRTMKWSHNGTWMIS  155 (464)
T ss_pred             ccceeeEEEcCCCce-eEeecccccEEEecCcee------eH-------------HHHhhhhcccceeEEEccCCCEEEE
Confidence            458999999999998 999999999999996321      11             1257899999999999999999999


Q ss_pred             EECCCeEEEEEccCCceeeeEEEeecc-ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  504 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~  504 (1102)
                      |+.+|.|++|+..-... +   .+.+| ...|++++|+|.+.  .++|++.||+|+|||....+.-..+.||.-.|.++.
T Consensus       156 gD~gG~iKyWqpnmnnV-k---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd  229 (464)
T KOG0284|consen  156 GDKGGMIKYWQPNMNNV-K---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD  229 (464)
T ss_pred             cCCCceEEecccchhhh-H---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence            99999999999865432 2   24444 48999999999888  799999999999999999999999999999999999


Q ss_pred             eeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC
Q 001311          505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  584 (1102)
Q Consensus       505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  584 (1102)
                      |++..  .+|++||.|..|++||.+++.++.++..|...|..+.|.+++                     ++|+++|.|.
T Consensus       230 WHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~---------------------N~Llt~skD~  286 (464)
T KOG0284|consen  230 WHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG---------------------NWLLTGSKDQ  286 (464)
T ss_pred             cCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCC---------------------CeeEEccCCc
Confidence            98766  589999999999999999999999888888777776666655                     6899999999


Q ss_pred             eEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCc
Q 001311          585 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTI  663 (1102)
Q Consensus       585 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  663 (1102)
                      .++++|+++.+.+.++.+|..  .+++++|+| ...+|.+|+.||.|..|.+... +.+..                   
T Consensus       287 ~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~-~p~~~-------------------  344 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLE-EPLGE-------------------  344 (464)
T ss_pred             eEEEEehhHhHHHHHhhcchh--hheeeccccccccceeeccCCCceEEEecccc-ccccC-------------------
Confidence            999999998888988887754  799999999 7788999999999999987522 11100                   


Q ss_pred             ccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceE
Q 001311          664 SPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKIS  743 (1102)
Q Consensus       664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~  743 (1102)
                                                                                            ...+|...|.
T Consensus       345 ----------------------------------------------------------------------i~~AHd~~iw  354 (464)
T KOG0284|consen  345 ----------------------------------------------------------------------IPPAHDGEIW  354 (464)
T ss_pred             ----------------------------------------------------------------------CCccccccee
Confidence                                                                                  1134889999


Q ss_pred             EEEEccCCceEEEeecCceEEeeecc
Q 001311          744 RLIFTNSGNAILALASNAIHLLWKWQ  769 (1102)
Q Consensus       744 ~~~~s~~g~~l~~~~~dg~i~iw~~~  769 (1102)
                      ++++.|-|..|++++.|.++++|.-.
T Consensus       355 sl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  355 SLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeeccccceeEeecCCCcceeeeccC
Confidence            99999999999999999999999753

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=8.7e-32  Score=256.31  Aligned_cols=293  Identities=16%  Similarity=0.209  Sum_probs=238.3

Q ss_pred             cccccceEEEEEccC-CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE
Q 001311          736 NLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  814 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~  814 (1102)
                      .+|.+++..++|+|- |..|++++.|+.|++|+....                   .+  .........+|...|++++|
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-------------------~s--~~ck~vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-------------------DS--WTCKTVLDDGHKRSVRSVAW   69 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-------------------Cc--EEEEEeccccchheeeeeee
Confidence            458889999999998 899999999999999987320                   00  11111222359999999999


Q ss_pred             ecCCCeEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeeeecc
Q 001311          815 SKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKG  888 (1102)
Q Consensus       815 s~d~~~las~s-dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~  888 (1102)
                      +|.|++||+++ |.++.||.-.  +.+++.++.||.++|.+++|++ +|++||+++.|.+|-||.+..   .++...|+.
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~  148 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE  148 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence            99999999999 9999999876  4578899999999999999999 999999999999999999974   367889999


Q ss_pred             ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEE
Q 001311          889 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFE  967 (1102)
Q Consensus       889 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd  967 (1102)
                      |...|..+.|+|...+|++++.|.+|++|+-..  .....+.+.+.+|..   .|.+++|++.|..|+++ .|++++||.
T Consensus       149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~--dddW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~  223 (312)
T KOG0645|consen  149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED--DDDWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR  223 (312)
T ss_pred             ccccccEEEEcCCcceeEEeccCCeEEEEeecC--CCCeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence            999999999999999999999999999998774  224667788888874   89999999999998885 889999998


Q ss_pred             cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311          968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus       968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
                      .-+.     + ...|++.++.+.|.  ...|++++.|+.|++|.-..+-.--.++........|.. .|+  ++.|.|..
T Consensus       224 ~~~~-----~-~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVN--sV~w~p~~  292 (312)
T KOG0645|consen  224 LYTD-----L-SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVN--SVQWNPKV  292 (312)
T ss_pred             eccC-----c-chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccccc-ccc--eEEEcCCC
Confidence            6522     1 23678999999998  557999999999999987643211122211112223333 577  99999966


Q ss_pred             CCEEEEEecCCcEEEEecc
Q 001311         1048 PNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1048 ~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      +++|++|++||.|++|.+.
T Consensus       293 ~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  293 SNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCceeecCCCceEEEEEec
Confidence            7899999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.9e-32  Score=269.87  Aligned_cols=294  Identities=16%  Similarity=0.315  Sum_probs=244.8

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      ++.+|.+.|.|+++.|-.+++++|+.|++|+|||+.+|+...   ++.||...|..+++|+-..  |+++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            689999999999999999999999999999999999998544   6899999999999999888  89999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      |++..+.++.+.||-..|.++..+|.-  +.|++|+.|.++|+||+++...+..+.+|...|.++.+.+-.         
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~d---------  289 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTD---------  289 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCC---------
Confidence            999999999999999999999987765  589999999999999999999999999888887777665533         


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  642 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  642 (1102)
                                  ..+++|+.|++|++||+..|+...++..|..  .+.+++.+|....+++++.| .|+-|++..+ ..+
T Consensus       290 ------------pqvit~S~D~tvrlWDl~agkt~~tlt~hkk--svral~lhP~e~~fASas~d-nik~w~~p~g-~f~  353 (460)
T KOG0285|consen  290 ------------PQVITGSHDSTVRLWDLRAGKTMITLTHHKK--SVRALCLHPKENLFASASPD-NIKQWKLPEG-EFL  353 (460)
T ss_pred             ------------CceEEecCCceEEEeeeccCceeEeeecccc--eeeEEecCCchhhhhccCCc-cceeccCCcc-chh
Confidence                        3599999999999999999999999887654  79999999999999998876 6788988766 222


Q ss_pred             eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                      ..+                                                                             
T Consensus       354 ~nl-----------------------------------------------------------------------------  356 (460)
T KOG0285|consen  354 QNL-----------------------------------------------------------------------------  356 (460)
T ss_pred             hcc-----------------------------------------------------------------------------
Confidence            222                                                                             


Q ss_pred             CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                                   .+|...|.+++...||- +++++++|.+.+||...+..-..++...         ..|.        
T Consensus       357 -------------sgh~~iintl~~nsD~v-~~~G~dng~~~fwdwksg~nyQ~~~t~v---------qpGS--------  405 (460)
T KOG0285|consen  357 -------------SGHNAIINTLSVNSDGV-LVSGGDNGSIMFWDWKSGHNYQRGQTIV---------QPGS--------  405 (460)
T ss_pred             -------------ccccceeeeeeeccCce-EEEcCCceEEEEEecCcCcccccccccc---------cCCc--------
Confidence                         23667778888887774 7888899999999986542211111100         0011        


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC
Q 001311          803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT  836 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~  836 (1102)
                      ...+..|.+.+|...|..|++|. |.+|++|.-..
T Consensus       406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            11456799999999999999998 99999997543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.3e-32  Score=282.78  Aligned_cols=290  Identities=19%  Similarity=0.309  Sum_probs=246.8

Q ss_pred             ccCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccC-CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEE
Q 001311          403 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  480 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~  480 (1102)
                      .+.||...|+++.|.| .+.+|++++.|+.|+||++-. +.+++   ++.||..+|.+++|+.+|.  .++|+|.|+.|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence            5889999999999999 999999999999999999987 55555   6899999999999999999  699999999999


Q ss_pred             EEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311          481 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  560 (1102)
Q Consensus       481 vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  560 (1102)
                      +||+++|+++..+. -...++++.|++++ .+.+++|+.|+.|+.||+++++.+..+..|-+.+..+.|-++|+      
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~------  355 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGR------  355 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCc------
Confidence            99999999999986 45567888988766 47899999999999999999998888888888888888777775      


Q ss_pred             ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311          561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                                     ++++.++|++++||+...+..+...... ......++..+|++.++++-+.|+.|.++.+....+
T Consensus       356 ---------------rFissSDdks~riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r  419 (503)
T KOG0282|consen  356 ---------------RFISSSDDKSVRIWENRIPVPIKNIADP-EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFR  419 (503)
T ss_pred             ---------------eEeeeccCccEEEEEcCCCccchhhcch-hhccCcceecCCCCCeehhhccCceEEEEecccccc
Confidence                           6999999999999999888766554322 223678899999999999999999999997543311


Q ss_pred             ce--eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311          641 LL--RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  718 (1102)
Q Consensus       641 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~  718 (1102)
                      .-  +.+++                                                                       
T Consensus       420 ~nkkK~feG-----------------------------------------------------------------------  428 (503)
T KOG0282|consen  420 LNKKKRFEG-----------------------------------------------------------------------  428 (503)
T ss_pred             cCHhhhhcc-----------------------------------------------------------------------
Confidence            10  00000                                                                       


Q ss_pred             cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311          719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  798 (1102)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  798 (1102)
                                         |                                                            
T Consensus       429 -------------------h------------------------------------------------------------  429 (503)
T KOG0282|consen  429 -------------------H------------------------------------------------------------  429 (503)
T ss_pred             -------------------e------------------------------------------------------------
Confidence                               0                                                            


Q ss_pred             ccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311          799 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  876 (1102)
Q Consensus       799 ~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  876 (1102)
                           .-.+....+.|||||++|++|+ ||.+.+||.++.+.+..++.|...+..+.|+|.....+|+++.||.|++||
T Consensus       430 -----~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  430 -----SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             -----eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence                 0123345688999999999998 999999999999999999999999999999998889999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=4.6e-33  Score=272.66  Aligned_cols=232  Identities=20%  Similarity=0.357  Sum_probs=203.2

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      ..+.|.|+.+..+   .+++|..|++|.|||.++-+++.                   ++.||++.|.|+.|.  .+.|+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqyd--~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQYD--ERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeecc--ceEEE
Confidence            4578999998644   39999999999999999877765                   589999999999994  66999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee---eEEeecCCCCeE
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVY  501 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~---~~~~~~h~~~v~  501 (1102)
                      +|+.|.+|+|||+++|+++.   ++-+|...|..+.|+..    +++|++.|.++.|||+.+...   .+.+.||...|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999876   57889999999999753    799999999999999987654   357889999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      .+.|.  .  +++++++.|.+|++|++.+.+.+.++.+|...|.++.+                       .++++++|+
T Consensus       325 vVdfd--~--kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY-----------------------r~rlvVSGS  377 (499)
T KOG0281|consen  325 VVDFD--D--KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY-----------------------RDRLVVSGS  377 (499)
T ss_pred             eeccc--c--ceEEEecCCceEEEEeccceeeehhhhcccccceehhc-----------------------cCeEEEecC
Confidence            99873  2  69999999999999999999999888888877766654                       235789999


Q ss_pred             CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      .|.+|++||+..|.++..+++|..  -|.++.|  |.+.+++|..||+|++||+..+
T Consensus       378 SDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~krIVSGaYDGkikvWdl~aa  430 (499)
T KOG0281|consen  378 SDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLQAA  430 (499)
T ss_pred             CCceEEEEeccccHHHHHHhchHH--hhhheee--cCceeeeccccceEEEEecccc
Confidence            999999999999999999998865  6889999  6688999999999999998776

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.2e-32  Score=276.56  Aligned_cols=283  Identities=20%  Similarity=0.363  Sum_probs=238.7

Q ss_pred             ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC
Q 001311          453 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG  532 (1102)
Q Consensus       453 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~  532 (1102)
                      ..+|..|.|.|+|+  .|++|+..|.+.+|+..+-.....++.|..+|.++.|+  .++.+++||+.+|.|++|+..-..
T Consensus        96 kc~V~~v~WtPeGR--RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws--~~g~wmiSgD~gG~iKyWqpnmnn  171 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGR--RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWS--HNGTWMISGDKGGMIKYWQPNMNN  171 (464)
T ss_pred             ccceeeEEEcCCCc--eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEc--cCCCEEEEcCCCceEEecccchhh
Confidence            45899999999999  79999999999999975444444567899999999985  556899999999999999876422


Q ss_pred             CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeE
Q 001311          533 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI  612 (1102)
Q Consensus       533 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~  612 (1102)
                      .                     ..+.+|+...|++++|+|+...|+++++||+|+|||....+....+.+|+-  .|.++
T Consensus       172 V---------------------k~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw--dVksv  228 (464)
T KOG0284|consen  172 V---------------------KIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW--DVKSV  228 (464)
T ss_pred             h---------------------HHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCC--Cccee
Confidence            2                     233344444566666666667899999999999999999988888887766  79999


Q ss_pred             EEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCC
Q 001311          613 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM  692 (1102)
Q Consensus       613 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1102)
                      .|+|...+|++++.|..|++||.+++ .++..+.                                              
T Consensus       229 dWHP~kgLiasgskDnlVKlWDprSg-~cl~tlh----------------------------------------------  261 (464)
T KOG0284|consen  229 DWHPTKGLIASGSKDNLVKLWDPRSG-SCLATLH----------------------------------------------  261 (464)
T ss_pred             ccCCccceeEEccCCceeEeecCCCc-chhhhhh----------------------------------------------
Confidence            99999999999999999999999888 3322221                                              


Q ss_pred             CCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccc
Q 001311          693 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE  772 (1102)
Q Consensus       693 ~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  772 (1102)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (464)
T KOG0284|consen  262 --------------------------------------------------------------------------------  261 (464)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001311          773 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT  851 (1102)
Q Consensus       773 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~  851 (1102)
                                                     +|...|..+.|++++.+|++++ |..++++|+++.+.+.++++|...++
T Consensus       262 -------------------------------~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~  310 (464)
T KOG0284|consen  262 -------------------------------GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVT  310 (464)
T ss_pred             -------------------------------hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhhe
Confidence                                           1667788888888888899988 88999999999999999999999999


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-ccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          852 FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       852 ~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      +++|+|-...+|.+|+.||.|..|.+...+.+..+ .+|...|++++|+|-|.+|++|+.|.++++|.-.
T Consensus       311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~  380 (464)
T KOG0284|consen  311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN  380 (464)
T ss_pred             eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence            99999988899999999999999999855555444 6799999999999999999999999999999744

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=5.3e-31  Score=300.79  Aligned_cols=255  Identities=21%  Similarity=0.384  Sum_probs=215.4

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe--eEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      |...|.|+.|||||++ +++++.|+.|++|+..+.+  .+.                   .+.+|...|.+++|+|||++
T Consensus       158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~  217 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY  217 (456)
T ss_pred             ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence            4899999999999997 9999999999999997666  322                   35899999999999999999


Q ss_pred             EEEEECCCeEEEEEcc-CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311          423 FGVAYSRHIVQIYSYH-GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  501 (1102)
Q Consensus       423 las~~~d~~v~vwd~~-~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~  501 (1102)
                      +++++.|++|+|||+. .+..++   ++.+|...|++++|+|+++  ++++|+.|++|+|||+++++++..+.+|.+.|+
T Consensus       218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is  292 (456)
T KOG0266|consen  218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS  292 (456)
T ss_pred             EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence            9999999999999994 434444   6889999999999999996  899999999999999999999999999999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCceeeeccccC-ceeEEEEcCCCCEEE
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKR-SLGVVQFDTTKNRFL  578 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~-~i~~~~~~~~~~~l~  578 (1102)
                      +++|  .+++.+|++++.|+.|++||+.++..  ...+..+                    ... .+..+.|+|++.+++
T Consensus       293 ~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~--------------------~~~~~~~~~~fsp~~~~ll  350 (456)
T KOG0266|consen  293 GLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGA--------------------ENSAPVTSVQFSPNGKYLL  350 (456)
T ss_pred             EEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCC--------------------CCCCceeEEEECCCCcEEE
Confidence            9997  56678999999999999999998763  2222222                    222 456666777777999


Q ss_pred             EEeCCCeEEEEECCCcceEEEEcCCCCC-CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311          579 AAGDDFSIKFWDMDSVQLLTSIDADGGL-PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                      +++.|+.+++||+..+.....+..+... ..+.+..+++.+.++++|+.|+.|++|+..++ ..+..+.+
T Consensus       351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~  419 (456)
T KOG0266|consen  351 SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG  419 (456)
T ss_pred             EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCcc-chhhhhcC
Confidence            9999999999999999999998877653 23445566789999999999999999999886 44444444

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.4e-31  Score=301.43  Aligned_cols=289  Identities=27%  Similarity=0.423  Sum_probs=246.1

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      +...|.++.|+++|+.+++++.++.+++|+.....                +     .....+  .+|...|.+++|+||
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~----------------~-----~~~~~l--~~h~~~v~~~~fs~d  214 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIK----------------S-----NLLREL--SGHTRGVSDVAFSPD  214 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeeccccc----------------c-----hhhccc--cccccceeeeEECCC
Confidence            46789999999999999999999999999862211                0     111112  349999999999999


Q ss_pred             CCeEEEEe-CCeEEEEEc-CCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee
Q 001311          818 DSYVMSAS-GGKISLFNM-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  895 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~-~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  895 (1102)
                      ++++++++ |++|+|||+ ..+.+++++.+|...|++++|+| +++++++|+.|++|+|||+++++++..+.+|.+.|++
T Consensus       215 ~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~  293 (456)
T KOG0266|consen  215 GSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISG  293 (456)
T ss_pred             CcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEE
Confidence            99999999 999999999 56689999999999999999999 7799999999999999999999999999999999999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEe
Q 001311          896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV  974 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~  974 (1102)
                      ++|++|+.+|++++.|+.|+|||+.++...   +.....++.... .++.+.|+|++++++++ .|+.+++||+..+...
T Consensus       294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~---~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~  369 (456)
T KOG0266|consen  294 LAFSPDGNLLVSASYDGTIRVWDLETGSKL---CLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV  369 (456)
T ss_pred             EEECCCCCEEEEcCCCccEEEEECCCCcee---eeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcce
Confidence            999999999999999999999999997643   344555555433 68999999999999996 7779999999999999


Q ss_pred             eeeccCCCCC---CeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311          975 KQWVPRESSA---PITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus       975 ~~~~~~~h~~---~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
                      ..+.  +|..   .+.+..++++++++++|+.|+.|++||+.++..++++.       +|....+.  .+.++| ..+++
T Consensus       370 ~~~~--~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~-------~h~~~~~~--~~~~~~-~~~~~  437 (456)
T KOG0266|consen  370 GTYT--GHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLE-------GHSKAAVS--DLSSHP-TENLI  437 (456)
T ss_pred             eeec--ccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhc-------CCCCCcee--ccccCC-CcCee
Confidence            9887  4544   45566678899999999999999999999999988887       44222234  788888 47889


Q ss_pred             EEEe--cCCcEEEEecc
Q 001311         1052 ALGL--SDGGVHVFEPL 1066 (1102)
Q Consensus      1052 ~s~~--~Dg~v~vW~~~ 1066 (1102)
                      ++++  .|+.+++|...
T Consensus       438 ~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  438 ASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             eecCcCCCceEEEecCC
Confidence            8888  79999999864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.3e-31  Score=246.60  Aligned_cols=245  Identities=17%  Similarity=0.213  Sum_probs=216.2

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +-.|.+.|.++.|+-||+| .++++.|.+|++||...+..+++                   ..+|..+|..++.+.|..
T Consensus        13 l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVlD~~~s~Dns   72 (307)
T KOG0316|consen   13 LDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVLDAALSSDNS   72 (307)
T ss_pred             ecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeee-------------------ecCCCceeeecccccccc
Confidence            3459999999999999998 88888899999999999999884                   889999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC--CeeeEEeecCCCC
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYIFEGHEAP  499 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~--~~~~~~~~~h~~~  499 (1102)
                      .+++|+.|..|.+||+++|+.++   .+++|.+.|+.++|+.+..  ++++|+.|.++++||.++  .++++.+......
T Consensus        73 kf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~D~  147 (307)
T KOG0316|consen   73 KFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG  147 (307)
T ss_pred             ccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhcCc
Confidence            99999999999999999999877   4899999999999999998  899999999999999986  4678889888889


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      |.++.+.    +..|++|+.||++|.||++.+.....+-                       ..+++++.|+++++..++
T Consensus       148 V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sDy~-----------------------g~pit~vs~s~d~nc~La  200 (307)
T KOG0316|consen  148 VSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSDYF-----------------------GHPITSVSFSKDGNCSLA  200 (307)
T ss_pred             eeEEEec----ccEEEeeccCCcEEEEEeecceeehhhc-----------------------CCcceeEEecCCCCEEEE
Confidence            9988753    2579999999999999998765433222                       236777777777789999


Q ss_pred             EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ++.|+++++.|-.+|+++..+.+|.....=..++++.....+++|++||.|.+||+.+.
T Consensus       201 ~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~  259 (307)
T KOG0316|consen  201 SSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE  259 (307)
T ss_pred             eeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc
Confidence            99999999999999999999998877655567788888899999999999999999877

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=100.00  E-value=7.5e-30  Score=268.55  Aligned_cols=625  Identities=15%  Similarity=0.190  Sum_probs=342.6

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      +.+..+-.|.+.|+.+.|||-...||||++.|..|+||.+..+-...             +.-....+.+..-.|.|+.|
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~f  136 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRF  136 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeec
Confidence            44555566999999999999888899999999999999998442221             11122234555568999999


Q ss_pred             ccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC-CeeeEEeec
Q 001311          417 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQYIFEG  495 (1102)
Q Consensus       417 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~-~~~~~~~~~  495 (1102)
                      +|...-|...+..|+++|||+.+++.+.   ++.+|.+.|.++.|+.||+  +|++++.|+.|+|||.+. ++.++...+
T Consensus       137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence            9976666666678999999999988654   6899999999999999999  899999999999999985 678888899


Q ss_pred             CCCCeEE-EeeeecCCccEEEEEeCC----CeEEEEEcCCCCC-eee--ecCCCCeeeEEEEccCCcee-eeccccCcee
Q 001311          496 HEAPVYS-VCPHHKENIQFIFSTALD----GKIKAWLYDNLGS-RVD--YEAPGRWCTTMAYSADGTRT-YQGFRKRSLG  566 (1102)
Q Consensus       496 h~~~v~~-v~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~-~~~--~~~~~~~v~~~~~s~~~~~~-~~~~~~~~i~  566 (1102)
                      |.+.-.+ +.|  -++-..|++.+.+    ..|++||.+.-.. ..+  +.... .|.--.+.||.+.+ +.|.....+.
T Consensus       212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~  288 (1012)
T KOG1445|consen  212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLF  288 (1012)
T ss_pred             cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEE
Confidence            9775222 334  4444567777654    5689999876432 222  21111 12222344444422 2333333444


Q ss_pred             EEEEcCCCCEEEEE--------------eCCCeE--------EEEECCCcceEEE--------E-cCC------------
Q 001311          567 VVQFDTTKNRFLAA--------------GDDFSI--------KFWDMDSVQLLTS--------I-DAD------------  603 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~--------------~~dg~i--------~iwd~~~~~~~~~--------~-~~~------------  603 (1102)
                      ++.+.+...+|.-+              .....+        +++.+.....+-.        + ..|            
T Consensus       289 ~lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p  368 (1012)
T KOG1445|consen  289 MLEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEP  368 (1012)
T ss_pred             EEEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCcc
Confidence            44443332211100              000011        1111111110000        0 000            


Q ss_pred             ---------CCCCCcCeEEEcCCCC-------------EEE-EEE---------------C-----CC------------
Q 001311          604 ---------GGLPASPRIRFNKDGC-------------LLA-VST---------------N-----DN------------  628 (1102)
Q Consensus       604 ---------~~~~~v~~~~~s~~~~-------------~l~-~~~---------------~-----dg------------  628 (1102)
                               +....+..+++.|..+             ..+ +++               +     |.            
T Consensus       369 ~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~  448 (1012)
T KOG1445|consen  369 GCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPK  448 (1012)
T ss_pred             CcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCc
Confidence                     0001111222222100             000 000               0     00            


Q ss_pred             --cEEEEEccCCccceee---------cccccccccccCCCCCCCcccchhhhH-----hhhhccccccccccccccCCC
Q 001311          629 --GIKILATSDGIRLLRT---------FENLAYDASRTSENSKPTISPISAAAA-----AAATSAGLADRAASMVSIPGM  692 (1102)
Q Consensus       629 --~i~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  692 (1102)
                        .++-.+.+........         -++.+..+............+.+....     ...+.+... +..|......+
T Consensus       449 ~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~-ksvPe~~~~~~  527 (1012)
T KOG1445|consen  449 KEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFG-KSVPEQPPVNF  527 (1012)
T ss_pred             chhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCcccc-ccCCCCCCccc
Confidence              0000000000000000         000000000000000000000000000     000000000 00000000000


Q ss_pred             CCCccccCCCCccccccCC------CccceEecccCCC------CCccccccCCCcccccceEEEEEccCCceEE--Eee
Q 001311          693 NGDVRSLADVKPRITEESN------DKSKVWKLTELSE------PNQCRSLRLPENLRATKISRLIFTNSGNAIL--ALA  758 (1102)
Q Consensus       693 ~~~~~~~~~~~~l~~~~~d------~~i~~w~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~--~~~  758 (1102)
                      ..  ..+.......+.+-.      |.+--|.--.+..      ...++.+...   -.+.  +--|+.+..+++  ..+
T Consensus       528 g~--~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~---~PgE--snGfcan~~rvAVPL~g  600 (1012)
T KOG1445|consen  528 GK--PISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTR---LPGE--SNGFCANNKRVAVPLAG  600 (1012)
T ss_pred             CC--CccccccccccccccccceeeccchheeeccCccccchhhhhhhhccccc---CCCc--cCceeeccceEEEEecC
Confidence            00  000000000000000      1111111111000      0011111100   0011  112333333343  345


Q ss_pred             cCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-CCCeEEEEe-CCeEEEEEcCC
Q 001311          759 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMT  836 (1102)
Q Consensus       759 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~s-dg~I~iwd~~~  836 (1102)
                      ..|.|-||+++....-+++.                     +.+......|+.+.|+| |...||+++ ||.|++|.+..
T Consensus       601 ~gG~iai~el~~PGrLPDgv---------------------~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a  659 (1012)
T KOG1445|consen  601 SGGVIAIYELNEPGRLPDGV---------------------MPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA  659 (1012)
T ss_pred             CCceEEEEEcCCCCCCCccc---------------------ccccccCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence            57899999986544433332                     22223567799999998 677889888 89999999865


Q ss_pred             Cc-------eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc
Q 001311          837 FK-------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG  909 (1102)
Q Consensus       837 ~~-------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  909 (1102)
                      +.       .-..+..|...|+.+.|+|--...|++++.|-+|++||+.+++....|.+|.+.|.+++|||||+.+|+.+
T Consensus       660 ~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc  739 (1012)
T KOG1445|consen  660 NGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC  739 (1012)
T ss_pred             CCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee
Confidence            32       34567889999999999997788999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeC----CeEEEEEcCCce--EeeeeccCCC
Q 001311          910 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE----TQLAIFETTKLE--CVKQWVPRES  982 (1102)
Q Consensus       910 ~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d----~~i~iwd~~~~~--~~~~~~~~~h  982 (1102)
                      .||+|+||+-.+++.      .+.++..+....-..+.|.-||+++++ +.|    .+|.+||..+..  .+.+...+- 
T Consensus       740 KDg~~rVy~Prs~e~------pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv-  812 (1012)
T KOG1445|consen  740 KDGTLRVYEPRSREQ------PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV-  812 (1012)
T ss_pred             cCceEEEeCCCCCCC------ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc-
Confidence            999999999887653      223333333344568899999999988 544    578899987644  222211110 


Q ss_pred             CCCeeEEEEcCCCc-EEEEEeCCCeEEEEEcCCceeE
Q 001311          983 SAPITHATFSCDSQ-LVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus       983 ~~~v~~l~~spd~~-~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
                      .-.+.--.+.+|.. ++++|-.|..|..|.+......
T Consensus       813 aps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy  849 (1012)
T KOG1445|consen  813 APSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPY  849 (1012)
T ss_pred             cCccccccccCCCceEEEecCCCceEEEEEecCCCce
Confidence            11222233455655 5678889999999998665543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.98  E-value=5.9e-32  Score=277.91  Aligned_cols=264  Identities=17%  Similarity=0.239  Sum_probs=216.3

Q ss_pred             Cccceeec-cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCC-CeeEEeeeeeeeccCCCCccccccccCCCCCCeEE
Q 001311          336 PKTVTRTL-NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  413 (1102)
Q Consensus       336 ~~~~~~~~-~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  413 (1102)
                      |++..+++ +|+..|+++.|.|-.-+||++|+.|+.|+||++.. +++++                   ++.+|..+|..
T Consensus       203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vrd  263 (503)
T KOG0282|consen  203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVRD  263 (503)
T ss_pred             cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhhh
Confidence            44444444 59999999999995555899999999999999987 66655                   58999999999


Q ss_pred             EEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe
Q 001311          414 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  493 (1102)
Q Consensus       414 l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~  493 (1102)
                      ++|+++|..+.+++.|+.|++||+++|+++....    -...++|+.|.||+.+ .+++|+.|+.|+.||+++++.++.+
T Consensus       264 ~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqeY  338 (503)
T KOG0282|consen  264 ASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQEY  338 (503)
T ss_pred             hhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHHH
Confidence            9999999999999999999999999999876432    2457899999999955 7899999999999999999999999


Q ss_pred             ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311          494 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  573 (1102)
Q Consensus       494 ~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  573 (1102)
                      ..|-+.|..+.|.  ++|..+++.+.|+++++|+.+..-.+.....                    .......++..+|+
T Consensus       339 d~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~--------------------~~~hsmP~~~~~P~  396 (503)
T KOG0282|consen  339 DRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIAD--------------------PEMHTMPCLTLHPN  396 (503)
T ss_pred             HhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcc--------------------hhhccCcceecCCC
Confidence            9999999999984  5668999999999999999987554432111                    11225567788888


Q ss_pred             CCEEEEEeCCCeEEEEECCCcc---eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311          574 KNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       574 ~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                      ++++++-+.|+.|.++.+...-   ....+.+|.-.+.-..+.|||||.+|++|+.||.+.+||.++- +.+..++
T Consensus       397 ~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lk  471 (503)
T KOG0282|consen  397 GKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLK  471 (503)
T ss_pred             CCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhh-hhhhccc
Confidence            8899999999999999865432   2344556655556678999999999999999999999999876 4444443

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=4.8e-31  Score=264.80  Aligned_cols=287  Identities=15%  Similarity=0.280  Sum_probs=238.1

Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                      ..|.+.|.-+.||++|++|++++.|.+..+|.+..                  |..  ..+...+  .+|..+|..+.||
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~------------------d~~--~kl~~tl--vgh~~~V~yi~wS  278 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVY------------------DVH--FKLKKTL--VGHSQPVSYIMWS  278 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEec------------------Ccc--eeeeeee--ecccCceEEEEEC
Confidence            45899999999999999999999999999998732                  222  1112122  3499999999999


Q ss_pred             cCCCeEEEEe-CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-cc
Q 001311          816 KNDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KR  892 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~  892 (1102)
                      ||.+++++++ +..+.+||+.++.+...+. ++...+.+++|.| ||..+++|+.|+.+..||+. |..+..+++-. ..
T Consensus       279 PDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~  356 (519)
T KOG0293|consen  279 PDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPK  356 (519)
T ss_pred             CCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCC-cchhhcccccccce
Confidence            9999999998 8889999999999887765 3457899999999 99999999999999999986 55566666543 56


Q ss_pred             ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCc
Q 001311          893 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL  971 (1102)
Q Consensus       893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~  971 (1102)
                      |.+++.++||+++++.+.|..|++++.++.....     ....+    .+|+++.+|.||+++.+. .+..+++||++..
T Consensus       357 v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~-----lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~  427 (519)
T KOG0293|consen  357 VHDLAITYDGKYVLLVTVDKKIRLYNREARVDRG-----LISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEEN  427 (519)
T ss_pred             eEEEEEcCCCcEEEEEecccceeeechhhhhhhc-----ccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchh
Confidence            8999999999999999999999999998743321     12222    378999999999999995 8999999999988


Q ss_pred             eEeeeeccCCC--CCCeeEEEEcC-CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311          972 ECVKQWVPRES--SAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus       972 ~~~~~~~~~~h--~~~v~~l~~sp-d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
                      ..++.+.  ||  ..-|-.-||-- |..++++||+|+.|+||+..+|+++..+.       ||... |+  +|+|+|.|+
T Consensus       428 ~lv~kY~--Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~Ls-------GHs~~-vN--cVswNP~~p  495 (519)
T KOG0293|consen  428 KLVRKYF--GHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLS-------GHSKT-VN--CVSWNPADP  495 (519)
T ss_pred             hHHHHhh--cccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeec-------CCcce-ee--EEecCCCCH
Confidence            8888776  55  33444445654 56899999999999999999999999887       76544 77  899999999


Q ss_pred             CEEEEEecCCcEEEEeccC
Q 001311         1049 NEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1049 ~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      .++|++|+||+|+||.+..
T Consensus       496 ~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  496 EMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             HHhhccCCCCeEEEecCCc
Confidence            9999999999999998864

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=3.4e-30  Score=239.81  Aligned_cols=213  Identities=21%  Similarity=0.342  Sum_probs=182.6

Q ss_pred             cccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          402 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       402 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                      .++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++   ++.+|...|..++.+.|+.  .+++|+.|+.|.+
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~v   85 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQV   85 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEE
Confidence            4688999999999999999999999999999999999998776   6889999999999999998  6999999999999


Q ss_pred             EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC--CCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      ||+.+|+.++.|.+|.+.|+.+.|+  .+...+++|+.|.++++||.+..  ++++.+......|.++.+          
T Consensus        86 wDV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v----------  153 (307)
T KOG0316|consen   86 WDVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDV----------  153 (307)
T ss_pred             EEcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEe----------
Confidence            9999999999999999999999985  44479999999999999999864  333444433344444433          


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  639 (1102)
                                   .+..+++|+.||++|.||++.|.....+-++    +|++++|++|++.+++++-|+++++.|-.+| 
T Consensus       154 -------------~~heIvaGS~DGtvRtydiR~G~l~sDy~g~----pit~vs~s~d~nc~La~~l~stlrLlDk~tG-  215 (307)
T KOG0316|consen  154 -------------AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH----PITSVSFSKDGNCSLASSLDSTLRLLDKETG-  215 (307)
T ss_pred             -------------cccEEEeeccCCcEEEEEeecceeehhhcCC----cceeEEecCCCCEEEEeeccceeeecccchh-
Confidence                         2346999999999999999999877666533    7999999999999999999999999999988 


Q ss_pred             cceeeccccc
Q 001311          640 RLLRTFENLA  649 (1102)
Q Consensus       640 ~~~~~~~~~~  649 (1102)
                      ++++...+|.
T Consensus       216 klL~sYkGhk  225 (307)
T KOG0316|consen  216 KLLKSYKGHK  225 (307)
T ss_pred             HHHHHhcccc
Confidence            6766666554

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.98  E-value=8.4e-32  Score=263.88  Aligned_cols=273  Identities=21%  Similarity=0.326  Sum_probs=228.0

Q ss_pred             cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC
Q 001311          452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  531 (1102)
Q Consensus       452 h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~  531 (1102)
                      ....|.|+.+. |+   .+++|..|++|+|||..+-.+++.+.||++.|.|+.+  +.  ..|++|+.|.+|++||+.++
T Consensus       196 ~skgVYClQYD-D~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~--rviisGSSDsTvrvWDv~tg  267 (499)
T KOG0281|consen  196 NSKGVYCLQYD-DE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DE--RVIVSGSSDSTVRVWDVNTG  267 (499)
T ss_pred             cCCceEEEEec-ch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cc--eEEEecCCCceEEEEeccCC
Confidence            45689999984 33   4999999999999999999999999999999998875  22  69999999999999999999


Q ss_pred             CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceE---EEEcCCCCCCC
Q 001311          532 GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPA  608 (1102)
Q Consensus       532 ~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~  608 (1102)
                      +.+.++-.|...|..+.|+.                       +++++++.|.++.+||+.+...+   ..+.+|  ...
T Consensus       268 e~l~tlihHceaVLhlrf~n-----------------------g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH--rAa  322 (499)
T KOG0281|consen  268 EPLNTLIHHCEAVLHLRFSN-----------------------GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAA  322 (499)
T ss_pred             chhhHHhhhcceeEEEEEeC-----------------------CEEEEecCCceeEEEeccCchHHHHHHHHhhh--hhh
Confidence            99999998888888887754                       47999999999999999876532   233334  446


Q ss_pred             cCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccc
Q 001311          609 SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS  688 (1102)
Q Consensus       609 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (1102)
                      |+.+.|+  .+++++++.|.+|++|++.++ +.++.+.+                                         
T Consensus       323 VNvVdfd--~kyIVsASgDRTikvW~~st~-efvRtl~g-----------------------------------------  358 (499)
T KOG0281|consen  323 VNVVDFD--DKYIVSASGDRTIKVWSTSTC-EFVRTLNG-----------------------------------------  358 (499)
T ss_pred             eeeeccc--cceEEEecCCceEEEEeccce-eeehhhhc-----------------------------------------
Confidence            8778884  569999999999999998887 55554433                                         


Q ss_pred             cCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeec
Q 001311          689 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  768 (1102)
Q Consensus       689 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~  768 (1102)
                                                                                                      
T Consensus       359 --------------------------------------------------------------------------------  358 (499)
T KOG0281|consen  359 --------------------------------------------------------------------------------  358 (499)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC
Q 001311          769 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP  847 (1102)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~  847 (1102)
                                                          |...|.|+.+  .|+++++|+ |.+|++||+..|.+++.++||.
T Consensus       359 ------------------------------------HkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE  400 (499)
T KOG0281|consen  359 ------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE  400 (499)
T ss_pred             ------------------------------------ccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence                                                3344444443  677899998 9999999999999999999999


Q ss_pred             CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce---------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311          848 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       848 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  918 (1102)
                      .-|.|+.|.   .+.+++|..||+|+|||+..+.         |+..+..|++.|..+.|  |...+++++.|.+|.|||
T Consensus       401 eLvRciRFd---~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  401 ELVRCIRFD---NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD  475 (499)
T ss_pred             Hhhhheeec---CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence            999999994   5789999999999999998753         45566779999999999  678999999999999999


Q ss_pred             cCCCcc
Q 001311          919 SDGWEK  924 (1102)
Q Consensus       919 ~~~~~~  924 (1102)
                      +..+..
T Consensus       476 Fl~~~~  481 (499)
T KOG0281|consen  476 FLNGPP  481 (499)
T ss_pred             cCCCCc
Confidence            987543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=6e-29  Score=306.98  Aligned_cols=310  Identities=15%  Similarity=0.218  Sum_probs=225.0

Q ss_pred             CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCC----cee
Q 001311          368 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG----DEV  443 (1102)
Q Consensus       368 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~----~~~  443 (1102)
                      +|.+++|+..+.+.....              ....+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+.    ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~  522 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI  522 (793)
T ss_pred             hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence            678899998765543321              11125569999999999999999999999999999998642    111


Q ss_pred             e-eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCe
Q 001311          444 R-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGK  522 (1102)
Q Consensus       444 ~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~  522 (1102)
                      . ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|.+.|++++|++ .++.+|++|+.||+
T Consensus       523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p-~~~~~L~Sgs~Dg~  599 (793)
T PLN00181        523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSS-ADPTLLASGSDDGS  599 (793)
T ss_pred             ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcC-CCCCEEEEEcCCCE
Confidence            1 112233 3468999999986433 799999999999999999999999999999999999864 24467888888888


Q ss_pred             EEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC
Q 001311          523 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  602 (1102)
                      |++||+.++                                                               ..+..+..
T Consensus       600 v~iWd~~~~---------------------------------------------------------------~~~~~~~~  616 (793)
T PLN00181        600 VKLWSINQG---------------------------------------------------------------VSIGTIKT  616 (793)
T ss_pred             EEEEECCCC---------------------------------------------------------------cEEEEEec
Confidence            888876542                                                               22222221


Q ss_pred             CCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001311          603 DGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  681 (1102)
Q Consensus       603 ~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (1102)
                      +   ..+.++.|+ +++.+|++|+.||.|++||+.+.......+                                    
T Consensus       617 ~---~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~------------------------------------  657 (793)
T PLN00181        617 K---ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTM------------------------------------  657 (793)
T ss_pred             C---CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEe------------------------------------
Confidence            1   136678884 579999999999999999986541111111                                    


Q ss_pred             ccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCc
Q 001311          682 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  761 (1102)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg  761 (1102)
                                                                            .+                        
T Consensus       658 ------------------------------------------------------~~------------------------  659 (793)
T PLN00181        658 ------------------------------------------------------IG------------------------  659 (793)
T ss_pred             ------------------------------------------------------cC------------------------
Confidence                                                                  01                        


Q ss_pred             eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC----
Q 001311          762 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT----  836 (1102)
Q Consensus       762 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~----  836 (1102)
                                                                 |...|.++.|. ++.+|++++ |++|++||+..    
T Consensus       660 -------------------------------------------h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~  695 (793)
T PLN00181        660 -------------------------------------------HSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG  695 (793)
T ss_pred             -------------------------------------------CCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc
Confidence                                                       33444444443 344455554 55555555542    


Q ss_pred             --CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee-------------eccccccceeEEEecC
Q 001311          837 --FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-------------LKGHSKRITGLAFSHA  901 (1102)
Q Consensus       837 --~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-------------l~~h~~~V~~l~~s~d  901 (1102)
                        ...+..+.+|...+.+++|++ ++.+||+|+.||.|++|+......+..             ...|...|.+++|+++
T Consensus       696 ~~~~~l~~~~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~  774 (793)
T PLN00181        696 INETPLHSFMGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQ  774 (793)
T ss_pred             cCCcceEEEcCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCC
Confidence              245677889999999999999 889999999999999999765432211             2345667999999999


Q ss_pred             CCEEEEEcCCCcEEEEEc
Q 001311          902 LNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       902 ~~~l~s~s~Dg~i~vwd~  919 (1102)
                      +..|++|+.||.|+||++
T Consensus       775 ~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        775 SSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCeEEEecCCCcEEEEec
Confidence            999999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.4e-28  Score=269.20  Aligned_cols=246  Identities=25%  Similarity=0.413  Sum_probs=208.4

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      .+|.+.|++++|+|++++ +++|+.||.|++|++.+++...                   .+..|...+.++.|+|++++
T Consensus         6 ~~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~   65 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTY   65 (289)
T ss_pred             cccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCE
Confidence            369999999999999995 8899999999999998876544                   36788899999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  502 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~  502 (1102)
                      |++++.|+.|++||+.+++.+.   .+..|...|.++.|++++.  ++++++.|+.|++||+.+++.+..+..|...|.+
T Consensus        66 l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~  140 (289)
T cd00200          66 LASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNS  140 (289)
T ss_pred             EEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEE
Confidence            9999999999999999876544   4678999999999999977  7888888999999999999999999999999999


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      ++|++.  +.++++++.|+.|++||++..+....+..+...+.++                     .++++++.+++++.
T Consensus       141 ~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~---------------------~~~~~~~~l~~~~~  197 (289)
T cd00200         141 VAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSV---------------------AFSPDGEKLLSSSS  197 (289)
T ss_pred             EEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceE---------------------EECCCcCEEEEecC
Confidence            998654  5788888889999999998766665555554444444                     45555557888888


Q ss_pred             CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ++.|++||+..++.+..+..+..  .+.++.|++++.++++++.+|.|++|+..++
T Consensus       198 ~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~  251 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFSPDGYLLASGSEDGTIRVWDLRTG  251 (289)
T ss_pred             CCcEEEEECCCCceecchhhcCC--ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc
Confidence            99999999999888887754533  6899999999989998888999999998765

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=1.4e-28  Score=269.19  Aligned_cols=285  Identities=27%  Similarity=0.467  Sum_probs=238.8

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  527 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd  527 (1102)
                      ++.+|.++|++++|+|+++  ++++++.|+.|++||+.+++....+.+|...+..+.|.  ++++++++++.||.|++|+
T Consensus         4 ~~~~h~~~i~~~~~~~~~~--~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~~~~i~i~~   79 (289)
T cd00200           4 TLKGHTGGVTCVAFSPDGK--LLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAAS--ADGTYLASGSSDKTIRLWD   79 (289)
T ss_pred             HhcccCCCEEEEEEcCCCC--EEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEEC--CCCCEEEEEcCCCeEEEEE
Confidence            4678999999999999998  79999999999999999999888999999999888875  4447999999999999999


Q ss_pred             cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311          528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  607 (1102)
Q Consensus       528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  607 (1102)
                      +...+....+..+...+.++.|++                     +++++++++.++.|++||+.+++....+..+.  .
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~  136 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSP---------------------DGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--D  136 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcC---------------------CCCEEEEecCCCeEEEEECCCcEEEEEeccCC--C
Confidence            998766665555554555555544                     44567777779999999999888888887543  4


Q ss_pred             CcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001311          608 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  687 (1102)
Q Consensus       608 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1102)
                      .+.++.|+|++.++++++.+|.|++||+.++ +....+.                                         
T Consensus       137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~-~~~~~~~-----------------------------------------  174 (289)
T cd00200         137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLT-----------------------------------------  174 (289)
T ss_pred             cEEEEEEcCcCCEEEEEcCCCcEEEEEcccc-ccceeEe-----------------------------------------
Confidence            6899999999999998888999999997644 1110000                                         


Q ss_pred             ccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeee
Q 001311          688 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       688 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (289)
T cd00200         175 --------------------------------------------------------------------------------  174 (289)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC
Q 001311          768 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP  846 (1102)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~  846 (1102)
                                                          .|...+.+++|+++++.+++++ ++.|++||+.+++.+..+..|
T Consensus       175 ------------------------------------~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~  218 (289)
T cd00200         175 ------------------------------------GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH  218 (289)
T ss_pred             ------------------------------------cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhc
Confidence                                                0455677888888887777777 889999999888888888788


Q ss_pred             CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311          847 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  918 (1102)
                      ...+.+++|++ ++.++++++.||.|++||+.+++....+.+|...|.+++|++++++|++++.|+.|++|+
T Consensus       219 ~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         219 ENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            88999999999 788999888899999999999999999999999999999999999999999999999996

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-29  Score=239.63  Aligned_cols=295  Identities=19%  Similarity=0.287  Sum_probs=229.6

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+.||+.+++.+.++.+|.+|.+|+.|.++.||--.+|+.+.   ++.||.+.|+|+....+.+  .++||+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence            578999999999999999999999999999999998888776   6899999999999999999  79999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-----CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-----DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-----dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      |+.+|+++..++ ...+|..+.|++..  ++++....     .+.|.++|++....                        
T Consensus        80 Dv~tGk~la~~k-~~~~Vk~~~F~~~g--n~~l~~tD~~mg~~~~v~~fdi~~~~~------------------------  132 (327)
T KOG0643|consen   80 DVETGKQLATWK-TNSPVKRVDFSFGG--NLILASTDKQMGYTCFVSVFDIRDDSS------------------------  132 (327)
T ss_pred             EcCCCcEEEEee-cCCeeEEEeeccCC--cEEEEEehhhcCcceEEEEEEccCChh------------------------
Confidence            999999999998 66788888886543  44444332     13344444432110                        


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                                                      ++...+++..+..+.  ..++.+-|+|-+++|++|..||.|.+||+++
T Consensus       133 --------------------------------~~~s~ep~~kI~t~~--skit~a~Wg~l~~~ii~Ghe~G~is~~da~~  178 (327)
T KOG0643|consen  133 --------------------------------DIDSEEPYLKIPTPD--SKITSALWGPLGETIIAGHEDGSISIYDART  178 (327)
T ss_pred             --------------------------------hhcccCceEEecCCc--cceeeeeecccCCEEEEecCCCcEEEEEccc
Confidence                                            111334455555443  3688899999999999999999999999988


Q ss_pred             CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311          638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  717 (1102)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w  717 (1102)
                      +.+.+...+                                                                       
T Consensus       179 g~~~v~s~~-----------------------------------------------------------------------  187 (327)
T KOG0643|consen  179 GKELVDSDE-----------------------------------------------------------------------  187 (327)
T ss_pred             Cceeeechh-----------------------------------------------------------------------
Confidence            733222110                                                                       


Q ss_pred             ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311          718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  797 (1102)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  797 (1102)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (327)
T KOG0643|consen  188 --------------------------------------------------------------------------------  187 (327)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC------
Q 001311          798 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------  870 (1102)
Q Consensus       798 ~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------  870 (1102)
                            .|...|+.+.+++|..++++++ |.+-++||+.+.++++++. -..+|++.+++|.....+..|+.+.      
T Consensus       188 ------~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT  260 (327)
T KOG0643|consen  188 ------EHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTT  260 (327)
T ss_pred             ------hhccccccccccCCcceEEecccCccceeeeccceeeEEEee-ecccccceecccccceEEecCCceeeeeeee
Confidence                  1666788888888888999998 8999999999999999887 4567999999994444444444432      


Q ss_pred             -------cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311          871 -------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       871 -------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                             .-++|++-..+.+...++|-++|++|+|+|||+..++|+.||.|++.-++.
T Consensus       261 ~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  261 STRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence                   123333333456677899999999999999999999999999999987664

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=2e-28  Score=302.33  Aligned_cols=253  Identities=14%  Similarity=0.172  Sum_probs=200.3

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  420 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg  420 (1102)
                      ...|...|++++|+|+|++ +|+|+.|+.|+|||+.+......           ........+ .+...|.+++|+| ++
T Consensus       479 ~~~~~~~V~~i~fs~dg~~-latgg~D~~I~iwd~~~~~~~~~-----------~~~~~~~~~-~~~~~v~~l~~~~~~~  545 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEF-FATAGVNKKIKIFECESIIKDGR-----------DIHYPVVEL-ASRSKLSGICWNSYIK  545 (793)
T ss_pred             ccCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEECCccccccc-----------ccccceEEe-cccCceeeEEeccCCC
Confidence            3458999999999999995 99999999999999864211000           000000012 2346899999988 58


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      .+||+++.||+|+|||+.+++.+.   .+.+|.+.|++++|+| ++.  +|++|+.|++|++||+.++.++..+..+ ..
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence            899999999999999999887554   5789999999999997 666  7999999999999999999999888855 67


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      |.++.|. .+++.+|++|+.||.|++||++... ....+..|...|..+.|.                      ++.+++
T Consensus       620 v~~v~~~-~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~----------------------~~~~lv  676 (793)
T PLN00181        620 ICCVQFP-SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV----------------------DSSTLV  676 (793)
T ss_pred             eEEEEEe-CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe----------------------CCCEEE
Confidence            8888884 3567899999999999999998754 344555565555555553                      235699


Q ss_pred             EEeCCCeEEEEECCCc------ceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          579 AAGDDFSIKFWDMDSV------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +++.|++|++||+..+      ..+..+.+|.  ..+.+++|++++.+|++|+.||.|++|+....
T Consensus       677 s~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        677 SSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             EEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999999999999743      4667777654  36788999999999999999999999997654

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=3.2e-30  Score=242.03  Aligned_cols=288  Identities=17%  Similarity=0.291  Sum_probs=242.8

Q ss_pred             ccCCCCCCeEEEEEcc---CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311          403 LVKDPGVSVNRVIWSP---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  479 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~sp---dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i  479 (1102)
                      +..||..+|..++|||   +|-+|++++.|+.-.+-+-++|.-+.   ++.||.+.|+......+-.  ..++++.|-+.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadfta   83 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTA   83 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchh
Confidence            4689999999999997   89999999999998888888888776   6999999999999988877  68999999999


Q ss_pred             EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      +|||.-+|..+++|. |..-|.+++|+  .|.++|++|+.++.+|+||++..+..                         
T Consensus        84 kvw~a~tgdelhsf~-hkhivk~~af~--~ds~~lltgg~ekllrvfdln~p~Ap-------------------------  135 (334)
T KOG0278|consen   84 KVWDAVTGDELHSFE-HKHIVKAVAFS--QDSNYLLTGGQEKLLRVFDLNRPKAP-------------------------  135 (334)
T ss_pred             hhhhhhhhhhhhhhh-hhheeeeEEec--ccchhhhccchHHHhhhhhccCCCCC-------------------------
Confidence            999999999999997 88889999984  44467888888888888877643221                         


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  639 (1102)
                                                           ...+.  ++...|..+.|....+.+++.+.|++||+||.+++ 
T Consensus       136 -------------------------------------p~E~~--ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg-  175 (334)
T KOG0278|consen  136 -------------------------------------PKEIS--GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG-  175 (334)
T ss_pred             -------------------------------------chhhc--CCCCcceeEEEeccCceEEeeccCCceEEEEeccC-
Confidence                                                 12222  23446888888888888888899999999999888 


Q ss_pred             cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311          640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  719 (1102)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~  719 (1102)
                      ..++.+.                                                                         
T Consensus       176 t~v~sL~-------------------------------------------------------------------------  182 (334)
T KOG0278|consen  176 TEVQSLE-------------------------------------------------------------------------  182 (334)
T ss_pred             cEEEEEe-------------------------------------------------------------------------
Confidence            2222110                                                                         


Q ss_pred             ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311          720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  799 (1102)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  799 (1102)
                                                                                                      
T Consensus       183 --------------------------------------------------------------------------------  182 (334)
T KOG0278|consen  183 --------------------------------------------------------------------------------  182 (334)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          800 VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       800 ~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                           ...+|+++.+++||++|.++..+.|.+||..+...++.++- ...|.+..++| +...++.|++|+.++.||..+
T Consensus       183 -----~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~-P~nV~SASL~P-~k~~fVaGged~~~~kfDy~T  255 (334)
T KOG0278|consen  183 -----FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKM-PCNVESASLHP-KKEFFVAGGEDFKVYKFDYNT  255 (334)
T ss_pred             -----cCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccC-ccccccccccC-CCceEEecCcceEEEEEeccC
Confidence                 34567888899999999888889999999999998888774 44599999999 778999999999999999999


Q ss_pred             ceeeeee-ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc
Q 001311          880 DEVKSKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  923 (1102)
Q Consensus       880 ~~~~~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  923 (1102)
                      ++.+... ++|.++|-|+.|+|||...++|+.||+|++|....++
T Consensus       256 geEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~  300 (334)
T KOG0278|consen  256 GEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK  300 (334)
T ss_pred             CceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence            9988886 9999999999999999999999999999999887654

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=8.4e-29  Score=239.48  Aligned_cols=312  Identities=13%  Similarity=0.168  Sum_probs=232.5

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      ..+..|++.+.+.+|||||. |+|||+.|..|+|.|++..-... ....+..-...........+-.|.++|+++.|+|.
T Consensus       106 ~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr  183 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR  183 (430)
T ss_pred             EEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceeecch
Confidence            34556999999999999999 59999999999999997210000 00000000011111112367899999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe---ecC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH  496 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~---~~h  496 (1102)
                      ..+|++|+.|++|++||+......+.++.+. ...+|.++.|.|.|.  +|+.|..-.++++||+.+-+|...-   .+|
T Consensus       184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh  260 (430)
T KOG0640|consen  184 ETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH  260 (430)
T ss_pred             hheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence            9999999999999999998654333333332 456899999999999  7888988899999999998886544   469


Q ss_pred             CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311          497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  576 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  576 (1102)
                      .+.|+++.+  ++.+++-++++.||.|++||--..+++.++.                   ..|.+..+.+..|..++++
T Consensus       261 t~ai~~V~Y--s~t~~lYvTaSkDG~IklwDGVS~rCv~t~~-------------------~AH~gsevcSa~Ftkn~ky  319 (430)
T KOG0640|consen  261 TGAITQVRY--SSTGSLYVTASKDGAIKLWDGVSNRCVRTIG-------------------NAHGGSEVCSAVFTKNGKY  319 (430)
T ss_pred             ccceeEEEe--cCCccEEEEeccCCcEEeeccccHHHHHHHH-------------------hhcCCceeeeEEEccCCeE
Confidence            999999886  5666899999999999999987777665442                   2233346666667777779


Q ss_pred             EEEEeCCCeEEEEECCCcceEEEEcCCCCCCC---cCeEEEcCCCCEEEEEEC-CCcEEEEEccCCccceeecccccccc
Q 001311          577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVSTN-DNGIKILATSDGIRLLRTFENLAYDA  652 (1102)
Q Consensus       577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~  652 (1102)
                      +++.|.|..+++|.+.+++++..+.+.+..+.   -+...|+....+++.-.+ .+.+.-||.++..+            
T Consensus       320 iLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr------------  387 (430)
T KOG0640|consen  320 ILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR------------  387 (430)
T ss_pred             EeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh------------
Confidence            99999999999999999999999886643222   233456666666655433 46778888776621            


Q ss_pred             cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccccc
Q 001311          653 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  732 (1102)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~  732 (1102)
                                                                                   +.+|.              
T Consensus       388 -------------------------------------------------------------~~l~s--------------  392 (430)
T KOG0640|consen  388 -------------------------------------------------------------VALLS--------------  392 (430)
T ss_pred             -------------------------------------------------------------hhhcc--------------
Confidence                                                                         11222              


Q ss_pred             CCCcccccceEEEEEccCCceEEEeecCceEEeee
Q 001311          733 LPENLRATKISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       733 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                         .+|++.+..+.-+|.+..+++++.|..+++|-
T Consensus       393 ---lgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  393 ---LGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             ---cCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence               23889999999999999999999999999995

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=9.7e-30  Score=246.95  Aligned_cols=292  Identities=19%  Similarity=0.287  Sum_probs=238.1

Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                      +....+.+..|+|||++|++++-||.|.+|+..+++...+-+..+.         .. .+       -+..+|.|+.|+.
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq---------d~-fM-------Mmd~aVlci~FSR  273 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ---------DN-FM-------MMDDAVLCISFSR  273 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh---------cc-ee-------ecccceEEEeecc
Confidence            3556788999999999999999999999999866544333322221         11 11       1678899999999


Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccce
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  894 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~  894 (1102)
                      |...+|+|+ ||.|++|.+.+|.|++.|. .|...|+|+.||. |+..+.+++.|.+++|.-+++|++++.++||++.|+
T Consensus       274 DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn  352 (508)
T KOG0275|consen  274 DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVN  352 (508)
T ss_pred             cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCcccccc
Confidence            999999999 9999999999999999987 8999999999999 888999999999999999999999999999999999


Q ss_pred             eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEEE-eCCeEEEEEcCCce
Q 001311          895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV-HETQLAIFETTKLE  972 (1102)
Q Consensus       895 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~-~d~~i~iwd~~~~~  972 (1102)
                      ...|++||..+++++.||+|+||+.++.+...     .+... ....+|..+..-| +-..++++ ..++|+|.++. |+
T Consensus       353 ~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~-----Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQ  425 (508)
T KOG0275|consen  353 EATFTDDGHHIISASSDGTVKVWHGKTTECLS-----TFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQ  425 (508)
T ss_pred             ceEEcCCCCeEEEecCCccEEEecCcchhhhh-----hccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ce
Confidence            99999999999999999999999999876532     22111 1123566666666 34455554 77889888874 67


Q ss_pred             EeeeeccC-CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311          973 CVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus       973 ~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
                      .++.+... ...+..-+.+.||.|.++.+.++|+.++.|.+.+|++...+..+.          .-++.++.+|. .++|
T Consensus       426 vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhE----------kdvIGl~HHPH-qNll  494 (508)
T KOG0275|consen  426 VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHE----------KDVIGLTHHPH-QNLL  494 (508)
T ss_pred             EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccc----------ccccccccCcc-cchh
Confidence            77777532 235677788899999999999999999999999999998877222          22447999994 6899


Q ss_pred             EEEecCCcEEEEe
Q 001311         1052 ALGLSDGGVHVFE 1064 (1102)
Q Consensus      1052 ~s~~~Dg~v~vW~ 1064 (1102)
                      ++-+.||.+++|.
T Consensus       495 AsYsEDgllKLWk  507 (508)
T KOG0275|consen  495 ASYSEDGLLKLWK  507 (508)
T ss_pred             hhhcccchhhhcC
Confidence            9999999999996

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.6e-27  Score=220.17  Aligned_cols=275  Identities=17%  Similarity=0.248  Sum_probs=212.7

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      ...++.....|.+|+|+|.|. |.|+|+..++.+|-....-..++.    ..+..........+.-+.|.+.|.|.+|||
T Consensus        25 ~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws~   99 (350)
T KOG0641|consen   25 AINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWSP   99 (350)
T ss_pred             EEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEecC
Confidence            455777889999999999999 699999999999987643222210    000001111122234678999999999999


Q ss_pred             CCCeEEEEECCCeEEEEEcc--CCceeeeEEEeeccccCEEEEEEcCC---CCeeEEEEec-CCCcEEEEeCCCCeeeEE
Q 001311          419 DGSLFGVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCG-DDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~-~d~~i~vWd~~~~~~~~~  492 (1102)
                      +|++||+|++|.+|++.-.+  +......-.++.-|.+.|..++|..+   +.. +|++++ .|..|++-|..+|+..+.
T Consensus       100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~a  178 (350)
T KOG0641|consen  100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFHA  178 (350)
T ss_pred             ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCccee
Confidence            99999999999999997554  33334444568889999999999755   233 566654 688899999999999999


Q ss_pred             eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311          493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  572 (1102)
Q Consensus       493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  572 (1102)
                      +.||++.|.++-   +-++.++++|+.|.+|++||++-..+..++...              +.-.|.....+..++++|
T Consensus       179 ~sghtghilaly---swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~--------------~~~~glessavaav~vdp  241 (350)
T KOG0641|consen  179 LSGHTGHILALY---SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDND--------------FHDGGLESSAVAAVAVDP  241 (350)
T ss_pred             ecCCcccEEEEE---EecCcEEEccCCCceEEEEeeeccceeeeccCc--------------ccCCCcccceeEEEEECC
Confidence            999999998874   334579999999999999999876655543221              111223345677888899


Q ss_pred             CCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          573 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       573 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      .|++|++|-.|....+||++.++.++.+..|  ...|.|+.|+|...++++++.|..|++-|+...
T Consensus       242 sgrll~sg~~dssc~lydirg~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             CcceeeeccCCCceEEEEeeCCceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            9999999999999999999999999999766  458999999999999999999999999987543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=4.9e-28  Score=241.46  Aligned_cols=255  Identities=16%  Similarity=0.287  Sum_probs=205.1

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      ..-...+-|.+.|.+|...  +++ +.+|+.||.++|||.. |+...                   .+.||.++|..++|
T Consensus        96 P~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~v~~  152 (423)
T KOG0313|consen   96 PKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKSVAW  152 (423)
T ss_pred             CCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecC-CceEE-------------------EEecCCcceeeeEE
Confidence            3445567799999999998  565 9999999999999986 55554                   48899999998888


Q ss_pred             ccCC---CeEEEEECCCeEEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC------
Q 001311          417 SPDG---SLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------  486 (1102)
Q Consensus       417 spdg---~~las~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~------  486 (1102)
                      --..   ..+++++.|.++++|.++.++.. .....-.||...|-+|+..++|.  .+++|+.|.+|+||+..+      
T Consensus       153 v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~  230 (423)
T KOG0313|consen  153 VIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDEL  230 (423)
T ss_pred             EecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccc
Confidence            6533   35999999999999999887643 22223459999999999999999  799999999999999321      


Q ss_pred             -------------------CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEE
Q 001311          487 -------------------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  547 (1102)
Q Consensus       487 -------------------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  547 (1102)
                                         +.++.++.||+.+|.++.|..   ...+++++-|.+|+.||+.+++....+...       
T Consensus       231 E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-------  300 (423)
T KOG0313|consen  231 ESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-------  300 (423)
T ss_pred             cccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-------
Confidence                               234567889999999999954   358999999999999999997766544322       


Q ss_pred             EEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc---eEEEEcCCCCCCCcCeEEEcC-CCCEEEE
Q 001311          548 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNK-DGCLLAV  623 (1102)
Q Consensus       548 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~-~~~~l~~  623 (1102)
                                     ..+.++.++|..++|++|+.|..|++||.+++.   ..+.+.+|  ...|.++.|+| +...|++
T Consensus       301 ---------------ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  301 ---------------KSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             ---------------cceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEE
Confidence                           256777778878899999999999999998764   33455555  45899999999 5667889


Q ss_pred             EECCCcEEEEEccCCcccee
Q 001311          624 STNDNGIKILATSDGIRLLR  643 (1102)
Q Consensus       624 ~~~dg~i~iwd~~~~~~~~~  643 (1102)
                      ++.|+++++||+++....+.
T Consensus       364 ~S~D~t~klWDvRS~k~ply  383 (423)
T KOG0313|consen  364 GSYDNTVKLWDVRSTKAPLY  383 (423)
T ss_pred             EecCCeEEEEEeccCCCcce
Confidence            99999999999988743433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=7.9e-29  Score=232.69  Aligned_cols=285  Identities=18%  Similarity=0.229  Sum_probs=243.4

Q ss_pred             eeccCCCCeeEEEEec---CCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311          341 RTLNQGSSPMSMDFHP---VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~sp---dg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      ...+|+.+|..++|||   +|- +|++++.|+.-.+-+-+||.-+.                   ++.||.+.|+..+..
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~-flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~~l~   68 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGY-FLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSATLN   68 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCce-EEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeeeecC
Confidence            3567999999999986   665 59999999999999999998887                   489999999999999


Q ss_pred             cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEeecC
Q 001311          418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGH  496 (1102)
Q Consensus       418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~~h  496 (1102)
                      .|..+.|+++.|-+.+|||.-+|..+.    -..|..-|.+++|+.|..  +|+||+.++.+||+|++..+ +...+.+|
T Consensus        69 ~na~~aasaaadftakvw~a~tgdelh----sf~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~gh  142 (334)
T KOG0278|consen   69 KNATRAASAAADFTAKVWDAVTGDELH----SFEHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGH  142 (334)
T ss_pred             chhhhhhhhcccchhhhhhhhhhhhhh----hhhhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCC
Confidence            999999999999999999999998776    235889999999999999  79999999999999998764 46789999


Q ss_pred             CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311          497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  576 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  576 (1102)
                      .+.|..+.|....  +.|++.+.|++||+||.+++.....+... ..|+++.++++|+                      
T Consensus       143 tg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~----------------------  197 (334)
T KOG0278|consen  143 TGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGR----------------------  197 (334)
T ss_pred             CCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCC----------------------
Confidence            9999999886433  67888899999999999998877766543 3466666666665                      


Q ss_pred             EEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccC
Q 001311          577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS  656 (1102)
Q Consensus       577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  656 (1102)
                      +++....+.|.+||..+...+..++..-   .|.+.+++|+...+++|++|..++.||..++.+... +           
T Consensus       198 ilTia~gssV~Fwdaksf~~lKs~k~P~---nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~-----------  262 (334)
T KOG0278|consen  198 ILTIAYGSSVKFWDAKSFGLLKSYKMPC---NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-Y-----------  262 (334)
T ss_pred             EEEEecCceeEEeccccccceeeccCcc---ccccccccCCCceEEecCcceEEEEEeccCCceeee-c-----------
Confidence            6777778899999999999888887654   488999999999999999999999999988833211 0           


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311          657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  736 (1102)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  736 (1102)
                                                                                                    ..
T Consensus       263 ------------------------------------------------------------------------------nk  264 (334)
T KOG0278|consen  263 ------------------------------------------------------------------------------NK  264 (334)
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          03


Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeecc
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQ  769 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~  769 (1102)
                      +|.++|.++.|+|+|...++++.||+|++|.+.
T Consensus       265 gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  265 GHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             CCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            488999999999999999999999999999864

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=1.8e-27  Score=237.48  Aligned_cols=303  Identities=16%  Similarity=0.225  Sum_probs=226.6

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCC-eeEEEEecCCCcEEEE
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVW  482 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~~~d~~i~vW  482 (1102)
                      ..-|.+.|.++...  ++++++|+.||.++|||..+...    +.+.||.++|.+++|--.+. .-.+++++.|.++++|
T Consensus       101 ~~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~----~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw  174 (423)
T KOG0313|consen  101 CFLHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSI----KTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLW  174 (423)
T ss_pred             cccchhhhhhhccc--CceEEEeecCCeeEEEecCCceE----EEEecCCcceeeeEEEecCCccceEEEecCCceEEEE
Confidence            45688999999888  89999999999999999987432    24889999999888753332 1159999999999999


Q ss_pred             eCCCCee----eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCC--eeeEEE----EccC
Q 001311          483 DATNGAK----QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR--WCTTMA----YSAD  552 (1102)
Q Consensus       483 d~~~~~~----~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~----~s~~  552 (1102)
                      -++.+..    +....||...|.++..  .++|..+++|+-|.+|.+|+..+. ..-.++....  .-....    -...
T Consensus       175 ~~~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~~rrk~~~~~~~~~~r~  251 (423)
T KOG0313|consen  175 KWNVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETD-EEDELESSSNRRRKKQKREKEGGTRT  251 (423)
T ss_pred             EecCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCC-ccccccccchhhhhhhhhhhcccccC
Confidence            9887754    3445699999999986  566789999999999999993221 1111100000  000000    0000


Q ss_pred             CceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311          553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       553 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  632 (1102)
                      ...++.||+. .+..+.|++ ...+++++.|.+|+.||+.++..+..+....   .++++.++|..++|++|+.|..|++
T Consensus       252 P~vtl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl  326 (423)
T KOG0313|consen  252 PLVTLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRL  326 (423)
T ss_pred             ceEEeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceee
Confidence            0023334443 666666666 4569999999999999999999998887554   4899999999999999999999999


Q ss_pred             EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311          633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  712 (1102)
Q Consensus       633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  712 (1102)
                      ||.+++...+.                                                                     
T Consensus       327 ~DPR~~~gs~v---------------------------------------------------------------------  337 (423)
T KOG0313|consen  327 WDPRTGDGSVV---------------------------------------------------------------------  337 (423)
T ss_pred             cCCCCCCCcee---------------------------------------------------------------------
Confidence            99876611100                                                                     


Q ss_pred             ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311          713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  792 (1102)
Q Consensus       713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~  792 (1102)
                                                     ...                                              
T Consensus       338 -------------------------------~~s----------------------------------------------  340 (423)
T KOG0313|consen  338 -------------------------------SQS----------------------------------------------  340 (423)
T ss_pred             -------------------------------EEe----------------------------------------------
Confidence                                           000                                              


Q ss_pred             ccccccccCCCCCCCCeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCc-eeeeecCCCCCeeEEEEecCCCcEEEEEeCC
Q 001311          793 GIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFK-TMATFMPPPPAATFLAFHPQDNNIIAIGMDD  869 (1102)
Q Consensus       793 ~~~~~~~~~~~~~~~~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~-~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d  869 (1102)
                             +  .+|.+.|.++.|+|... .|++++ |+++++||+++.. .+..+.+|...|.++.|.  ++.+|++|+.|
T Consensus       341 -------~--~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~--~~~~IvSGGaD  409 (423)
T KOG0313|consen  341 -------L--IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN--EGGLIVSGGAD  409 (423)
T ss_pred             -------e--ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc--CCceEEeccCc
Confidence                   1  12778888888888665 566777 9999999999877 889999999999999998  57899999999


Q ss_pred             CcEEEEEe
Q 001311          870 SSIQIYNV  877 (1102)
Q Consensus       870 g~v~vwd~  877 (1102)
                      .+|+|+.-
T Consensus       410 ~~l~i~~~  417 (423)
T KOG0313|consen  410 NKLRIFKG  417 (423)
T ss_pred             ceEEEecc
Confidence            99999864

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=2.1e-28  Score=246.57  Aligned_cols=260  Identities=18%  Similarity=0.262  Sum_probs=211.6

Q ss_pred             CCCccceeecc-CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE
Q 001311          334 DLPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  412 (1102)
Q Consensus       334 ~~~~~~~~~~~-h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  412 (1102)
                      .+|......+. |.+.|..+.|-++... |++|+.|..|.+|++...+...                 ..++.|..+.|+
T Consensus       162 ~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g~it  223 (459)
T KOG0288|consen  162 TLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLGNIT  223 (459)
T ss_pred             ccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCCCcc
Confidence            33444445555 9999999999999775 9999999999999998765211                 115788889999


Q ss_pred             EEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311          413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~  492 (1102)
                      .+.|.++++++++++.|+.+++|++...+...   +|.||++.|+++.|.....  .+++|+.|.+|+.||+..+.|.++
T Consensus       224 ~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt  298 (459)
T KOG0288|consen  224 SIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKT  298 (459)
T ss_pred             eeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheecc
Confidence            99999999999999999999999999877554   6899999999999998877  599999999999999999999887


Q ss_pred             eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311          493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  572 (1102)
Q Consensus       493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  572 (1102)
                      +. ....+..|+..    ...+++|-.|+.||+||.++.........++ .|+++..+.                     
T Consensus       299 ~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~---------------------  351 (459)
T KOG0288|consen  299 VL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM---------------------  351 (459)
T ss_pred             cc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc---------------------
Confidence            75 33445666542    2578999999999999999887776665544 455555544                     


Q ss_pred             CCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311          573 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  644 (1102)
Q Consensus       573 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  644 (1102)
                      ++..+++++.|.++.+.|+++......+...+.  ....+.+.|||++.|+++|+.||.|+||++.++ ++...
T Consensus       352 ~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg-KlE~~  424 (459)
T KOG0288|consen  352 DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG-KLEKV  424 (459)
T ss_pred             CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc-eEEEE
Confidence            445788889999999999999998888765432  234788999999999999999999999999988 44433

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=1.7e-26  Score=243.40  Aligned_cols=586  Identities=16%  Similarity=0.194  Sum_probs=339.7

Q ss_pred             ccCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCceee---eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311          403 LVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVR---QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  478 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~---~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~  478 (1102)
                      ++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|....   .-..+.+..-.|.++.|.|.... ++++ +..|+
T Consensus        74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~s-~a~g~  151 (1012)
T KOG1445|consen   74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILAS-GAHGS  151 (1012)
T ss_pred             eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEEe-ccCce
Confidence            6889999999999999 88899999999999999998543211   11223344457899999998774 4444 45689


Q ss_pred             EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC-eeeecCCCCeeeEEEEccCCceee
Q 001311          479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      ++|||+.+++.+..+.+|...|.+..|  +.||.+|++.+.|+.|+|||.+.... +....+|++               
T Consensus       152 v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~---------------  214 (1012)
T KOG1445|consen  152 VYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGG---------------  214 (1012)
T ss_pred             EEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCcccccccccc---------------
Confidence            999999999999999999999999998  57789999999999999999987543 333344432               


Q ss_pred             eccccCceeEEEEcCCCCEEEEEe----CCCeEEEEECCC-cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEE
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIK  631 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~  631 (1102)
                           ..-..+.|-.+-.+|++.+    .-..|++||.+. +..+.++...... .|.--.|.||.++|+.++ .+..+.
T Consensus       215 -----~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~  288 (1012)
T KOG1445|consen  215 -----MRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLF  288 (1012)
T ss_pred             -----chhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEE
Confidence                 1122233333333566655    346799999875 3455555433322 344456889887766544 466777


Q ss_pred             EEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCC
Q 001311          632 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  711 (1102)
Q Consensus       632 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  711 (1102)
                      .+.+......+...-.+.......                                       .+...+....-+..+  
T Consensus       289 ~lE~~d~qPyLs~v~~~tle~~~~---------------------------------------GA~lvpkral~VM~~--  327 (1012)
T KOG1445|consen  289 MLEMQDRQPYLSHVFELTLEEQTL---------------------------------------GATLVPKRALHVMDG--  327 (1012)
T ss_pred             EEEecCCCcchhhhhhhcchhhhc---------------------------------------cceecchhhhhhcch--
Confidence            777655422222111111110000                                       000000011111111  


Q ss_pred             CccceEecccCCCCCccccccCCC---------------------------cccccceEEEEEccCCc------------
Q 001311          712 DKSKVWKLTELSEPNQCRSLRLPE---------------------------NLRATKISRLIFTNSGN------------  752 (1102)
Q Consensus       712 ~~i~~w~~~~~~~~~~~~~~~~~~---------------------------~~~~~~i~~~~~s~~g~------------  752 (1102)
                      ...+++.+..........  ..|.                           .+.+..+..+...|..+            
T Consensus       328 EV~rvlQLt~~~ivPi~y--~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~  405 (1012)
T KOG1445|consen  328 EVDRVLQLTKSSIVPIPY--IVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPT  405 (1012)
T ss_pred             hhhhheecccCceeeccc--ccchhhhhhhhhhhCccccCCccCcCccceecCccccccccccCchhccCCCCCCCCCCC
Confidence            112333333211111111  1110                           01111222222221100            


Q ss_pred             -eEE----------------------EeecC-------------ceEEe-----eeccccccCCCCccc-----------
Q 001311          753 -AIL----------------------ALASN-------------AIHLL-----WKWQRTERNSSGKAT-----------  780 (1102)
Q Consensus       753 -~l~----------------------~~~~d-------------g~i~i-----w~~~~~~~~~~~~~~-----------  780 (1102)
                       ..+                      ..+++             ..++-     +.-..+...++....           
T Consensus       406 p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~  485 (1012)
T KOG1445|consen  406 PKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPIST  485 (1012)
T ss_pred             cccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcchhhhhhcccccccccCccCCCcccccccCCCCCccc
Confidence             000                      00000             00000     000000000000000           


Q ss_pred             -----------cc-------ccceeccCCCccccc------------------------------------cccCC-CCC
Q 001311          781 -----------AS-------VAPQLWQPPSGIMMT------------------------------------NDVTD-SNP  805 (1102)
Q Consensus       781 -----------~~-------~~~~~w~~~~~~~~~------------------------------------~~~~~-~~~  805 (1102)
                                 ++       .++.+..+.-|+.+.                                    +.+.+ .+|
T Consensus       486 ~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~gh  565 (1012)
T KOG1445|consen  486 ISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGH  565 (1012)
T ss_pred             cCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCCCccccccccccccccccceeeccchheeeccCcccc
Confidence                       00       000000000000000                                    00000 011


Q ss_pred             CC-------------CeeEEEEecCCCeEEE---EeCCeEEEEEcCCCc-eeee-ecC--CCCCeeEEEEecCCCcEEEE
Q 001311          806 EE-------------AVPCFALSKNDSYVMS---ASGGKISLFNMMTFK-TMAT-FMP--PPPAATFLAFHPQDNNIIAI  865 (1102)
Q Consensus       806 ~~-------------~i~~l~~s~d~~~las---~sdg~I~iwd~~~~~-~~~~-~~~--~~~~i~~l~~sp~d~~~las  865 (1102)
                      .+             +-.+=-|..+.+++|+   |+.|.|.||+++..- +.-. +.+  ....|+.+.|.|-|...||+
T Consensus       566 ks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAV  645 (1012)
T KOG1445|consen  566 KSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAV  645 (1012)
T ss_pred             chhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeee
Confidence            11             1111234445666665   337899999997532 2111 111  24469999999999999999


Q ss_pred             EeCCCcEEEEEeecce-------eeeeeccccccceeEEEecC-CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC
Q 001311          866 GMDDSSIQIYNVRVDE-------VKSKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT  937 (1102)
Q Consensus       866 g~~dg~v~vwd~~~~~-------~~~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  937 (1102)
                      +++||.|++|.+..+.       .-..+.+|...|+++.|+|- ...|++++.|.+|++||+.+.+.     ...+.+|.
T Consensus       646 a~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~-----~~~l~gHt  720 (1012)
T KOG1445|consen  646 ATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKL-----YSRLVGHT  720 (1012)
T ss_pred             cccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhh-----hheeccCc
Confidence            9999999999997642       34567889999999999985 57899999999999999998653     34456776


Q ss_pred             CCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC----eEEEEEc
Q 001311          938 PTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----TVCVFSA 1012 (1102)
Q Consensus       938 ~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg----~I~vwd~ 1012 (1102)
                      .   .|..++|||||+.+|+ +.||+|++|+...++..-.-....-...-..+.|.-||+++++.+.|.    .|.+||.
T Consensus       721 d---qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~A  797 (1012)
T KOG1445|consen  721 D---QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDA  797 (1012)
T ss_pred             C---ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhh
Confidence            4   8999999999999999 799999999998765432211111123345567777999998888775    5889998


Q ss_pred             CCcee--EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccc
Q 001311         1013 ANLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus      1013 ~~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1073 (1102)
                      .+...  +.+..    +-..     -.++--.|.++.+.++++|-.|..|++|.+....+-+-
T Consensus       798 q~l~~~pl~t~~----lDva-----ps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~l  851 (1012)
T KOG1445|consen  798 QTLDLRPLYTQV----LDVA-----PSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLL  851 (1012)
T ss_pred             hhccCCcceeee----eccc-----CccccccccCCCceEEEecCCCceEEEEEecCCCceee
Confidence            76542  22211    0000     11222345565566789999999999999977664333

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=5.6e-27  Score=222.27  Aligned_cols=276  Identities=16%  Similarity=0.243  Sum_probs=229.6

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE--EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  525 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~  525 (1102)
                      .+.+|.+.|.+|+|+.+|.  .|++|+.|+++.||++..++...  ...+|.+.|..++|++... ..+++++.|++|++
T Consensus        15 ~~~~~~~~v~Sv~wn~~g~--~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~-d~~atas~dk~ir~   91 (313)
T KOG1407|consen   15 ELQGHVQKVHSVAWNCDGT--KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHP-DLFATASGDKTIRI   91 (313)
T ss_pred             HhhhhhhcceEEEEcccCc--eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCC-cceEEecCCceEEE
Confidence            4678999999999999999  79999999999999999886654  4578999999999987554 68999999999999


Q ss_pred             EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC
Q 001311          526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  605 (1102)
Q Consensus       526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  605 (1102)
                      ||++..++........+.                      ..+.|+|+|++++.++.|..|.+.|.++.+.....+..- 
T Consensus        92 wd~r~~k~~~~i~~~~en----------------------i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-  148 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGEN----------------------INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-  148 (313)
T ss_pred             EEeccCcEEEEeeccCcc----------------------eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-
Confidence            999998877655443332                      235677777899999999999999999888776665432 


Q ss_pred             CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001311          606 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  685 (1102)
Q Consensus       606 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1102)
                        .++-++|+-++.+++.....|.|.|...... +.+..+                                        
T Consensus       149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsL-kpv~si----------------------------------------  185 (313)
T KOG1407|consen  149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSL-KPVQSI----------------------------------------  185 (313)
T ss_pred             --eeeeeeecCCCCEEEEecCCceEEEEecccc-cccccc----------------------------------------
Confidence              4677889888888777777788888764322 111111                                        


Q ss_pred             ccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEe
Q 001311          686 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  765 (1102)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i  765 (1102)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (313)
T KOG1407|consen  186 --------------------------------------------------------------------------------  185 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec
Q 001311          766 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  844 (1102)
Q Consensus       766 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~  844 (1102)
                                                           ..|.....|+.|+|+|+++|+|+ |..+.+||+...-|.+.+.
T Consensus       186 -------------------------------------~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~is  228 (313)
T KOG1407|consen  186 -------------------------------------KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCIS  228 (313)
T ss_pred             -------------------------------------ccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeec
Confidence                                                 01667778899999999999999 8999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCC
Q 001311          845 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD  911 (1102)
Q Consensus       845 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  911 (1102)
                      -+.-+|..+.||. ||++||+|++|..|-|=++++|..+..++ +.++...|+|+|...+||-++.|
T Consensus       229 RldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  229 RLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             cccCceEEEEecc-CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecCCCceeeEEecC
Confidence            9999999999999 99999999999999999999999888887 78889999999999999988776

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=3.2e-27  Score=241.82  Aligned_cols=269  Identities=18%  Similarity=0.256  Sum_probs=213.6

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeec-cCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWD-LGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      .-.|.-.|+||+++||+++ ..+++.|++|.=|++.+++..... ..--+ +.....+.+..- .+|...|.+++.|+||
T Consensus       138 ~~~H~~s~~~vals~d~~~-~fsask~g~i~kw~v~tgk~~~~i-~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKR-VFSASKDGTILKWDVLTGKKDRYI-IERDEVLKSHGNPLKESR-KGHVKEILTLAVSSDG  214 (479)
T ss_pred             eccccCcceEEEeeccccc-eeecCCCcceeeeehhcCcccccc-cccchhhhhccCCCCccc-ccccceeEEEEEcCCC
Confidence            4459999999999999997 999999999999999999865210 00000 011122222222 4899999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      +|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|++|++|+++....+.++.||.+.|
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v  289 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDGV  289 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence            999999999999999999988665   5899999999999987666  58999999999999999999999999999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .++...  .-+..+..|+.|+++++|++.. +....+.++.+.+.+++|-.+.                      .+++|
T Consensus       290 ~~IdaL--~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In~~----------------------HfvsG  344 (479)
T KOG0299|consen  290 LGIDAL--SRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFINDE----------------------HFVSG  344 (479)
T ss_pred             eeechh--cccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEeccc----------------------ceeec
Confidence            998753  3335566666999999999943 4444556666666666665544                      49999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCC----------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGG----------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  643 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  643 (1102)
                      +.+|.|.+|++...+++.+.....+          ..+|++++..|...++++|+.+|.|++|-+.++.+.+.
T Consensus       345 SdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~  417 (479)
T KOG0299|consen  345 SDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAIN  417 (479)
T ss_pred             cCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccc
Confidence            9999999999999998877653221          12788999999999999999999999999988854333

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=7.2e-27  Score=264.06  Aligned_cols=245  Identities=19%  Similarity=0.324  Sum_probs=213.6

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +-.|...+.|..|+ ++.  +.+|+.|.+|++||..++..+..                  .+.||.+.|++++|..-+.
T Consensus       204 ~~~~~~~~~~~q~~-~~~--~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~  262 (537)
T KOG0274|consen  204 LGTDDHVVLCLQLH-DGF--FKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGD  262 (537)
T ss_pred             cccCcchhhhheee-cCe--EEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCC
Confidence            33478899999999 443  99999999999999999988773                  3899999999999998899


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  501 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~  501 (1102)
                      +|++|+.|.+++|||..+|++..   .+.+|.+.|.++...+.    ++++|+.|.+|++|++.++.++..+.+|.++|.
T Consensus       263 ~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~  335 (537)
T KOG0274|consen  263 KLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVN  335 (537)
T ss_pred             EEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEE
Confidence            99999999999999999999877   58899999999997543    688999999999999999999999999999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      ++...    +.++++|+.|++|++||+.+.+++..+.+|...|.++.+...                      +.+++|+
T Consensus       336 ~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~----------------------~~~~Sgs  389 (537)
T KOG0274|consen  336 CVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE----------------------NRLLSGS  389 (537)
T ss_pred             EEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc----------------------ceEEeee
Confidence            99863    469999999999999999999999999999999988876553                      3599999


Q ss_pred             CCCeEEEEECCCc-ceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeec
Q 001311          582 DDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  645 (1102)
Q Consensus       582 ~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  645 (1102)
                      .|++|++||+.+. +++.++.+|..  .+..  +...+++|++++.|++|++||..++ ...+.+
T Consensus       390 ~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~--l~~~~~~Lvs~~aD~~Ik~WD~~~~-~~~~~~  449 (537)
T KOG0274|consen  390 LDTTIKVWDLRTKRKCIHTLQGHTS--LVSS--LLLRDNFLVSSSADGTIKLWDAEEG-ECLRTL  449 (537)
T ss_pred             eccceEeecCCchhhhhhhhcCCcc--cccc--cccccceeEeccccccEEEeecccC-ceeeee
Confidence            9999999999999 89999987755  3433  3447789999999999999998887 444444

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=3e-27  Score=267.95  Aligned_cols=304  Identities=17%  Similarity=0.250  Sum_probs=240.7

Q ss_pred             cccceEEEEEccCCceEEEee--cCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          738 RATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                      +...|.++..+|+|..+++++  .|+.++||+...-..          ....++..-...+   .....|.+.|.|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l---~~m~~h~~sv~CVR~S   78 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHL---CTMDDHDGSVNCVRFS   78 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhh---eeeccccCceeEEEEC
Confidence            455689999999999999999  799999998643110          0011222101111   1123499999999999


Q ss_pred             cCCCeEEEEe-CCeEEEEEcCC------------------CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311          816 KNDSYVMSAS-GGKISLFNMMT------------------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  876 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~------------------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  876 (1102)
                      +||++||+|+ |+.|.||+...                  ++++..+.+|.+.|..++|+| ++.+||+++.|++|.||+
T Consensus        79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn  157 (942)
T KOG0973|consen   79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN  157 (942)
T ss_pred             CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence            9999999999 78899999762                  236678899999999999999 999999999999999999


Q ss_pred             eecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311          877 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  956 (1102)
Q Consensus       877 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  956 (1102)
                      ..+.+++..+.+|.+.|..+.|.|-|+||||-+.|++|+||++.....  ...+..+-.+.........+.|||||++|+
T Consensus       158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i--~k~It~pf~~~~~~T~f~RlSWSPDG~~la  235 (942)
T KOG0973|consen  158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGI--EKSITKPFEESPLTTFFLRLSWSPDGHHLA  235 (942)
T ss_pred             cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccccee--eEeeccchhhCCCcceeeecccCCCcCeec
Confidence            999999999999999999999999999999999999999999765332  122333333333445678999999999999


Q ss_pred             E--EeC---CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC-----Cc------------EEEEEeCCCeEEEEEcCC
Q 001311          957 V--VHE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQ------------LVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       957 ~--~~d---~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd-----~~------------~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      +  +.+   ..+.|.+-.+.+.-..+.  ||.+++.+++|+|-     .+            .+|+|+.|++|.||....
T Consensus       236 s~nA~n~~~~~~~IieR~tWk~~~~Lv--GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  236 SPNAVNGGKSTIAIIERGTWKVDKDLV--GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             chhhccCCcceeEEEecCCceeeeeee--cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            8  333   378898888877777666  89999999999981     11            578999999999999988


Q ss_pred             ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1015 LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1015 ~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      .+++..+.  ...     +  -..+.++|+| ||..|+++|.||+|.+..+++++
T Consensus       314 ~RPl~vi~--~lf-----~--~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  314 PRPLFVIH--NLF-----N--KSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             CCchhhhh--hhh-----c--CceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence            87775433  111     1  3345999999 79999999999999999998876

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=8.4e-27  Score=240.79  Aligned_cols=286  Identities=17%  Similarity=0.269  Sum_probs=234.9

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      ..+.|.+++|+|...+=++....-.+.+|+..+                      ...... +.  .....+.++.|..|
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~----------------------~~~~k~-~s--rFk~~v~s~~fR~D   79 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT----------------------RSVRKT-FS--RFKDVVYSVDFRSD   79 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecch----------------------hhhhhh-HH--hhccceeEEEeecC
Confidence            457899999999766545555555666665421                      111110 11  14677999999999


Q ss_pred             CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeE
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  896 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l  896 (1102)
                      |+++|+|. .|.|+|||+.+...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|.+.|.+.
T Consensus        80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g  159 (487)
T KOG0310|consen   80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG  159 (487)
T ss_pred             CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence            99999999 79999999888778899999999999999999999999999999999999999988877899999999999


Q ss_pred             EEecCC-CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEee
Q 001311          897 AFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK  975 (1102)
Q Consensus       897 ~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~  975 (1102)
                      +|+|-. ..++|||.||+|++||+....   ........|     .+|..+.|-|.|..++++....|+|||+.+|....
T Consensus       160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll  231 (487)
T KOG0310|consen  160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLL  231 (487)
T ss_pred             ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceeh
Confidence            999875 478999999999999998743   223333333     37999999999999999999999999999766554


Q ss_pred             eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe
Q 001311          976 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus       976 ~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
                      .... .|...|+|+++..|+..|++|+.|+.|+|||+.+.+.+..+.    .+..     |.  +++-+| |++.++.|.
T Consensus       232 ~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~----~~~p-----vL--siavs~-dd~t~viGm  298 (487)
T KOG0310|consen  232 TSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK----YPGP-----VL--SIAVSP-DDQTVVIGM  298 (487)
T ss_pred             hhhh-cccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee----cccc-----ee--eEEecC-CCceEEEec
Confidence            4332 489999999999999999999999999999999999998887    4444     44  888889 568999999


Q ss_pred             cCCcEEEEeccCCC
Q 001311         1056 SDGGVHVFEPLESE 1069 (1102)
Q Consensus      1056 ~Dg~v~vW~~~~~~ 1069 (1102)
                      .||.+.+=+...++
T Consensus       299 snGlv~~rr~~~k~  312 (487)
T KOG0310|consen  299 SNGLVSIRRREVKK  312 (487)
T ss_pred             ccceeeeehhhccc
Confidence            99999888665544

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.2e-27  Score=261.10  Aligned_cols=272  Identities=14%  Similarity=0.168  Sum_probs=207.2

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEe---------------------------------------
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------------------------------------  384 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~---------------------------------------  384 (1102)
                      .|.+.|+++.||+||+| ||+|+.|+.|+||.+...+....                                       
T Consensus       265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~  343 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS  343 (712)
T ss_pred             ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence            69999999999999997 99999999999999876211100                                       


Q ss_pred             --eeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEc
Q 001311          385 --RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  462 (1102)
Q Consensus       385 --~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s  462 (1102)
                        ....+.+..-.-.+.+...+.||.+.|..|+||.++ +|++++.|.+|++|++...++++    ...|.+-|+||+|+
T Consensus       344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~----~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLK----VFSHNDFVTCVAFN  418 (712)
T ss_pred             CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceee----EEecCCeeEEEEec
Confidence              000000111111122334688999999999999765 89999999999999999998887    44699999999999


Q ss_pred             CCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCC
Q 001311          463 HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR  542 (1102)
Q Consensus       463 ~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~  542 (1102)
                      |-+.. ++++|+-|+.||||++...+.+.-..-+ .-|+++||.  ++|+..+.|+.+|.+++|+....+.......+  
T Consensus       419 PvDDr-yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~--PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~--  492 (712)
T KOG0283|consen  419 PVDDR-YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYS--PDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR--  492 (712)
T ss_pred             ccCCC-cEeecccccceEEeecCcCeeEeehhhh-hhheeEEec--cCCceEEEEEeccEEEEEEccCCeEEEeeeEe--
Confidence            97776 8999999999999999888776655544 779999984  56799999999999999998765544322111  


Q ss_pred             eeeEEEEccCCceeeeccccCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEE
Q 001311          543 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL  621 (1102)
Q Consensus       543 ~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  621 (1102)
                              -.+.+-.   ....|+.+.+.|.. ..+++.+.|..|||||.++..++..+++......-....|+.||++|
T Consensus       493 --------~~~~Kk~---~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~I  561 (712)
T KOG0283|consen  493 --------LHNKKKK---QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHI  561 (712)
T ss_pred             --------eccCccc---cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEE
Confidence                    1111100   11145555554432 35888899999999999999999999877766666788999999999


Q ss_pred             EEEECCCcEEEEEccCC
Q 001311          622 AVSTNDNGIKILATSDG  638 (1102)
Q Consensus       622 ~~~~~dg~i~iwd~~~~  638 (1102)
                      +++++|..|++|+....
T Consensus       562 Vs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  562 VSASEDSWVYIWKNDSF  578 (712)
T ss_pred             EEeecCceEEEEeCCCC
Confidence            99999999999997543

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.1e-26  Score=218.42  Aligned_cols=279  Identities=16%  Similarity=0.214  Sum_probs=228.0

Q ss_pred             cccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          402 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       402 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                      ..+.+|...|.+++|+.||..||+|+.|+++.||+++..+.. ......+|.+.|-.++|.|.... .+++++.|++|++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~-~~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~   91 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFR-KELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRI   91 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhh-hhhcccCCCcchhhheeCCCCCc-ceEEecCCceEEE
Confidence            357789999999999999999999999999999999987433 33457899999999999998776 7999999999999


Q ss_pred             EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311          482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  561 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  561 (1102)
                      ||+++++++.......+.+. ++|  +++|.+++.++.|..|.+.|.++.+.....+.. .                   
T Consensus        92 wd~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~-~-------------------  148 (313)
T KOG1407|consen   92 WDIRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQFK-F-------------------  148 (313)
T ss_pred             EEeccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhccc-c-------------------
Confidence            99999999999887777776 455  466789999999999999999875544332211 1                   


Q ss_pred             cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311          562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  641 (1102)
Q Consensus       562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  641 (1102)
                        .+.-++|+.++++++.....|.|.|.....-+++..++.|.  ....|+.|+|+|+++|+|+.|-.+.+||+... .+
T Consensus       149 --e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~GsADAlvSLWD~~EL-iC  223 (313)
T KOG1407|consen  149 --EVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGSADALVSLWDVDEL-IC  223 (313)
T ss_pred             --eeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeeccccceeeccChhHh-hh
Confidence              23334555555677777778999999999999999998775  46889999999999999999999999997543 11


Q ss_pred             eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311          642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  721 (1102)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~  721 (1102)
                      .+.+.                                                                           
T Consensus       224 ~R~is---------------------------------------------------------------------------  228 (313)
T KOG1407|consen  224 ERCIS---------------------------------------------------------------------------  228 (313)
T ss_pred             heeec---------------------------------------------------------------------------
Confidence            11110                                                                           


Q ss_pred             CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311          722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  801 (1102)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  801 (1102)
                                                                                                      
T Consensus       229 --------------------------------------------------------------------------------  228 (313)
T KOG1407|consen  229 --------------------------------------------------------------------------------  228 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC
Q 001311          802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD  869 (1102)
Q Consensus       802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d  869 (1102)
                        .+.-+|+.+.||.||++||+++ |..|-|-++++|..+..++ +.++...++|+| ...+||.+++|
T Consensus       229 --RldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~dd  293 (313)
T KOG1407|consen  229 --RLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDD  293 (313)
T ss_pred             --cccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecC
Confidence              0566788888999999999998 8889999999999988887 788899999999 88999988866

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=2.2e-26  Score=218.91  Aligned_cols=235  Identities=12%  Similarity=0.106  Sum_probs=197.4

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      +.+.+|..+++.+.|+.+|. ||.++++|.++.||-..+|+.+..                   +.||.+.|+|+..+.+
T Consensus         4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~   63 (327)
T KOG0643|consen    4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWD   63 (327)
T ss_pred             cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCC
Confidence            44668999999999999999 699999999999999999999884                   8999999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-----cCCCcEEEEeCC-------CC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-----GDDKTIKVWDAT-------NG  487 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-----~~d~~i~vWd~~-------~~  487 (1102)
                      .++|++|+.|.++++||+++|+++...    .-..+|..+.|+.+|..  ++..     +..+.|.++|++       +.
T Consensus        64 s~~liTGSAD~t~kLWDv~tGk~la~~----k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~  137 (327)
T KOG0643|consen   64 SKHLITGSADQTAKLWDVETGKQLATW----KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE  137 (327)
T ss_pred             cceeeeccccceeEEEEcCCCcEEEEe----ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence            999999999999999999999988643    24678999999999994  3333     234679999998       45


Q ss_pred             eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311          488 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       488 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                      ++...+..+...++.+.|.+.  +++|++|..||.|..||++++.... ....|...|+.+++++|.             
T Consensus       138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~-------------  202 (327)
T KOG0643|consen  138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDR-------------  202 (327)
T ss_pred             CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCc-------------
Confidence            667788888899999888554  4799999999999999999875544 335566666666666665             


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311          567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  626 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  626 (1102)
                              .++++++.|.+-++||..+-..+.++....   +|++.+++|-...++.|+.
T Consensus       203 --------T~FiT~s~Dttakl~D~~tl~v~Kty~te~---PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  203 --------TYFITGSKDTTAKLVDVRTLEVLKTYTTER---PVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             --------ceEEecccCccceeeeccceeeEEEeeecc---cccceecccccceEEecCC
Confidence                    589999999999999999999999887543   5999999998877777764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=6.1e-27  Score=258.88  Aligned_cols=274  Identities=15%  Similarity=0.241  Sum_probs=213.2

Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeecccccc---------------CCCCcc---------cccc---------
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER---------------NSSGKA---------TASV---------  783 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~~---------~~~~---------  783 (1102)
                      .|.+.|.++.||+||++|+++|.|+.|+||.+.....               ...+..         ....         
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5999999999999999999999999999999876210               000000         0000         


Q ss_pred             -cceeccCCCccc---cccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecC
Q 001311          784 -APQLWQPPSGIM---MTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQ  858 (1102)
Q Consensus       784 -~~~~w~~~~~~~---~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~  858 (1102)
                       ...+.+......   ....+  .||...|..+.||.++ +|++++ |.+|++|++...+|++.|. |..-||||+|+|.
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef--~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPv  420 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEF--KGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPV  420 (712)
T ss_pred             CccccCCCccccccccchhhh--hccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEeccc
Confidence             000111111100   11112  3599999999999876 677777 9999999999999999998 9999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC
Q 001311          859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP  938 (1102)
Q Consensus       859 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  938 (1102)
                      |.+|+++|+-||.||||++...+.+.-.. -..-|++++|.|||++.+.|+.+|.+++|+....+.....-+....+...
T Consensus       421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~  499 (712)
T KOG0283|consen  421 DDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKK  499 (712)
T ss_pred             CCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccc
Confidence            99999999999999999998776554433 34789999999999999999999999999999877666555555555544


Q ss_pred             CCCCCcEEEEccCC--cEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311          939 TAQSDTRVQFHQDQ--IHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       939 ~~~~v~~~~~spdg--~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      ....|+.+.|.|..  +.|+++.|..|+|||..+...+..+........-....|+.||++|+++++|..|+||+.+..
T Consensus       500 ~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  500 QGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             cCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCC
Confidence            44579999999754  478889999999999988888877763223445567789999999999999999999998543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=3.9e-25  Score=217.12  Aligned_cols=288  Identities=21%  Similarity=0.317  Sum_probs=226.6

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC--CCcEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIK  480 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~  480 (1102)
                      .+..-.+.|.++.|+++|.+|++++.|.+++|||..+++.++   ++..+.-.|..++|.....  .++.++.  |.+||
T Consensus         9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIr   83 (311)
T KOG1446|consen    9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIR   83 (311)
T ss_pred             ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceE
Confidence            455567899999999999999999999999999999998776   4556777899999998888  4555554  88999


Q ss_pred             EEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311          481 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  560 (1102)
Q Consensus       481 vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  560 (1102)
                      .-++.+.+.++.|.||...|++++.+|.+  +.+++++.|++|++||++..++...+...                    
T Consensus        84 yLsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--------------------  141 (311)
T KOG1446|consen   84 YLSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLS--------------------  141 (311)
T ss_pred             EEEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecC--------------------
Confidence            99999999999999999999999986654  68999999999999999976665443322                    


Q ss_pred             ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc--ceEEEEcCC-CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV--QLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                         .-.+++|+|.|-.+|++.....|++||++.-  .+..++... ......+.+.|||||++|+.++..+.+++.|.-+
T Consensus       142 ---~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  142 ---GRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             ---CCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence               2234677777788888888779999999863  344444433 3345678999999999999999999999999877


Q ss_pred             CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311          638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  717 (1102)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w  717 (1102)
                      | .....+.++.                                                                    
T Consensus       219 G-~~~~tfs~~~--------------------------------------------------------------------  229 (311)
T KOG1446|consen  219 G-TVKSTFSGYP--------------------------------------------------------------------  229 (311)
T ss_pred             C-cEeeeEeecc--------------------------------------------------------------------
Confidence            7 2222221110                                                                    


Q ss_pred             ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311          718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  797 (1102)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  797 (1102)
                                                      +                                               
T Consensus       230 --------------------------------~-----------------------------------------------  230 (311)
T KOG1446|consen  230 --------------------------------N-----------------------------------------------  230 (311)
T ss_pred             --------------------------------C-----------------------------------------------
Confidence                                            0                                               


Q ss_pred             cccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          798 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       798 ~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                             ...-....+|+||++++++|+ ||+|.+|+++++..+..+++ +.+.+.++.|+| .-.+++++  +..+-+|
T Consensus       231 -------~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa--~s~l~fw  300 (311)
T KOG1446|consen  231 -------AGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFVSA--SSNLVFW  300 (311)
T ss_pred             -------CCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeeeec--CceEEEE
Confidence                   011114567889999999998 79999999999999999988 688999999999 55555554  5668888


Q ss_pred             Eee
Q 001311          876 NVR  878 (1102)
Q Consensus       876 d~~  878 (1102)
                      =..
T Consensus       301 ~p~  303 (311)
T KOG1446|consen  301 LPD  303 (311)
T ss_pred             ecc
Confidence            654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.95  E-value=1.2e-27  Score=241.21  Aligned_cols=286  Identities=19%  Similarity=0.319  Sum_probs=234.7

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+..|.+.|..+.|-++...|++|+.|..|++|++..++ ...+.+|.|-.++|+.+.|.++++  .+++++.|+.+++|
T Consensus       170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W  246 (459)
T KOG0288|consen  170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW  246 (459)
T ss_pred             hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence            477899999999999999999999999999999998876 334456888889999999999999  68999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      ++.+.+...++.||++.|+++.|....  ..+++|+.|.+|+.||+....+..++-. ...+..|..+            
T Consensus       247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~------------  311 (459)
T KOG0288|consen  247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS------------  311 (459)
T ss_pred             eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheeccccc-cccccceEec------------
Confidence            999999999999999999999885443  3499999999999999988655543221 2222222221            


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  642 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  642 (1102)
                                 ...+++|-.|+.|++||.++..+......++   .|+++..++++..|.+++.|.++.+.|+++. ...
T Consensus       312 -----------~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsssRDdtl~viDlRt~-eI~  376 (459)
T KOG0288|consen  312 -----------ISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK-EIR  376 (459)
T ss_pred             -----------ceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeecCCCceeeeecccc-cEE
Confidence                       1247778889999999999999999988765   4999999999999999999999999998765 222


Q ss_pred             eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                      ..+.                                                                            
T Consensus       377 ~~~s----------------------------------------------------------------------------  380 (459)
T KOG0288|consen  377 QTFS----------------------------------------------------------------------------  380 (459)
T ss_pred             EEee----------------------------------------------------------------------------
Confidence            2111                                                                            


Q ss_pred             CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                                                ..|..                                                 
T Consensus       381 --------------------------A~g~k-------------------------------------------------  385 (459)
T KOG0288|consen  381 --------------------------AEGFK-------------------------------------------------  385 (459)
T ss_pred             --------------------------ccccc-------------------------------------------------
Confidence                                      11100                                                 


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                        .....+.++|||++.|+++|+ ||.|+||++.++++...+.....  .|++++|+| .|..|++++.++.+.+|
T Consensus       386 --~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  386 --CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW  458 (459)
T ss_pred             --cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence              122367789999999999999 99999999999999888776554  499999999 89999999999999999

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=5.2e-26  Score=257.13  Aligned_cols=287  Identities=18%  Similarity=0.275  Sum_probs=238.7

Q ss_pred             CCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311          406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  485 (1102)
Q Consensus       406 ~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~  485 (1102)
                      .|...+.+..|.  +.++++++.|++|++||..++..+..  .+.||.+.|.+++|..-+.  ++++|+.|.+++|||+.
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~  279 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS  279 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence            467789999998  77899999999999999999886653  3889999999999987455  79999999999999999


Q ss_pred             CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311          486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  565 (1102)
Q Consensus       486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  565 (1102)
                      +|+|.+++.+|...|.++..    ...++++|+.|.+|++|++.++..+..+.+|...|.++...               
T Consensus       280 sg~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~---------------  340 (537)
T KOG0274|consen  280 TGECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD---------------  340 (537)
T ss_pred             CCcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec---------------
Confidence            99999999999999998874    22578999999999999999988888888888888777765               


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeec
Q 001311          566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF  645 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  645 (1102)
                              +.++++|+.|++|++||+.+++++..+.+|.+  .|.++.+... ..+++|+.|++|++||+.+..+++..+
T Consensus       341 --------~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl  409 (537)
T KOG0274|consen  341 --------EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTL  409 (537)
T ss_pred             --------CCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhh
Confidence                    24799999999999999999999999998654  8989887665 899999999999999998774333333


Q ss_pred             ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCC
Q 001311          646 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  725 (1102)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~  725 (1102)
                      .+|.                                                                            
T Consensus       410 ~~h~----------------------------------------------------------------------------  413 (537)
T KOG0274|consen  410 QGHT----------------------------------------------------------------------------  413 (537)
T ss_pred             cCCc----------------------------------------------------------------------------
Confidence            3221                                                                            


Q ss_pred             CccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC
Q 001311          726 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  805 (1102)
Q Consensus       726 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  805 (1102)
                                                                                                      
T Consensus       414 --------------------------------------------------------------------------------  413 (537)
T KOG0274|consen  414 --------------------------------------------------------------------------------  413 (537)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          806 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                       .-+..+  ...+++|++++ |++|++||..++++++++.+ |...|.++++.   ...+++++.||.+++||+.++++.
T Consensus       414 -~~v~~l--~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  414 -SLVSSL--LLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             -cccccc--ccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccCchh
Confidence             111111  12456788887 99999999999999999998 67888888876   347888999999999999999988


Q ss_pred             eeecccc
Q 001311          884 SKLKGHS  890 (1102)
Q Consensus       884 ~~l~~h~  890 (1102)
                      +.+-.+.
T Consensus       488 ~~l~~~~  494 (537)
T KOG0274|consen  488 RTLLSTD  494 (537)
T ss_pred             hhhhhcc
Confidence            8774443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-26  Score=238.01  Aligned_cols=248  Identities=21%  Similarity=0.256  Sum_probs=198.4

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      ....+.|++++|||...+=+|+.+. -.+.|++..+.....                   .+..-...|.++.|-.||++
T Consensus        23 ~ke~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~L   82 (487)
T KOG0310|consen   23 HKEHNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRL   82 (487)
T ss_pred             ccccCcceeEecCCCCCCceEEecc-cEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeE
Confidence            3456899999999966543444432 789999988766554                   24555678999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  502 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~  502 (1102)
                      ||+|+..|.|+|||.++...++   .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+...+..+.+|++.|.+
T Consensus        83 laaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   83 LAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             EEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            9999999999999977644444   48899999999999999887 8999999999999999999987799999999999


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      .+|++. ++.+++|||.||.|++||++.......--.|+.+|..+.+.|.|.                     .+++++ 
T Consensus       159 g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs---------------------~iasAg-  215 (487)
T KOG0310|consen  159 GDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGS---------------------LIASAG-  215 (487)
T ss_pred             eccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCC---------------------EEEEcC-
Confidence            999764 447999999999999999998754333344666677777666654                     566655 


Q ss_pred             CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      .+.|++||+.+|........ .|...|+|+.+..++..|++++-|+.+++||+.+-
T Consensus       216 Gn~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~  270 (487)
T KOG0310|consen  216 GNSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY  270 (487)
T ss_pred             CCeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccceEEEEccce
Confidence            45899999986654433332 13447999999999999999999999999996443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1e-26  Score=219.54  Aligned_cols=286  Identities=17%  Similarity=0.252  Sum_probs=223.6

Q ss_pred             eEEEEec--CCCeEEEEEe-----cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCC
Q 001311          350 MSMDFHP--VQQTLLLVGT-----NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGS  421 (1102)
Q Consensus       350 ~~v~~sp--dg~~llasg~-----~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~  421 (1102)
                      .++.|||  +++..+|+++     ..|++.|-++..++.+..  ++-+               .-.+.+..++||+ ...
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e~   74 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHEN   74 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCcc
Confidence            5788888  4553344443     257899999975544432  2222               2356899999999 456


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  501 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~  501 (1102)
                      .+++++.||+++|||+.-  .-.++..++.|...|.++.|++-.++ .+++++-|++|++|+...++.++++.||...|.
T Consensus        75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy  151 (311)
T KOG0277|consen   75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY  151 (311)
T ss_pred             eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence            788899999999999543  33456678999999999999998777 677789999999999999999999999999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      ...|++.. .++++++|.|+++++||++..+....+..|...+.++.|+.-..                    +.+++|+
T Consensus       152 ~a~~sp~~-~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~--------------------~vl~Tg~  210 (311)
T KOG0277|consen  152 QAAFSPHI-PNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNH--------------------NVLATGG  210 (311)
T ss_pred             EEecCCCC-CCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCC--------------------cEEEecC
Confidence            99998754 47999999999999999998877777777777777777665544                    5789999


Q ss_pred             CCCeEEEEECCCcc-eEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311          582 DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  659 (1102)
Q Consensus       582 ~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1102)
                      .|+.|++||++.-+ ++..+.+|  .-.|+.+.||| ....|++++.|-+++|||...+...+.....|+.-+...    
T Consensus       211 vd~~vr~wDir~~r~pl~eL~gh--~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~----  284 (311)
T KOG0277|consen  211 VDNLVRGWDIRNLRTPLFELNGH--GLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGL----  284 (311)
T ss_pred             CCceEEEEehhhccccceeecCC--ceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEecc----
Confidence            99999999998754 45666555  44799999999 567899999999999999987766677776666543311    


Q ss_pred             CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311          660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  718 (1102)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~  718 (1102)
                                                         +-.. .+..++++.+.|..+.+|+
T Consensus       285 -----------------------------------Dws~-~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  285 -----------------------------------DWSL-FDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             -----------------------------------cccc-ccCceeeecccccceeeec
Confidence                                               1111 2578899999999999997

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=6.7e-26  Score=219.64  Aligned_cols=247  Identities=17%  Similarity=0.207  Sum_probs=196.2

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCC-eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      ...+.|.+++|||....+++.|+.|++||+|+++.. ....                  +....|.++|.+++|+.||..
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk   86 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK   86 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence            367899999999977778889999999999999863 3221                  256789999999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  502 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~  502 (1102)
                      +++|+.|+.+++||+.+++...    +..|.++|.++.|-+....-.|+|||.|++|++||++...++.++. -.+.+++
T Consensus        87 Vf~g~~Dk~~k~wDL~S~Q~~~----v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa  161 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASGQVSQ----VAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA  161 (347)
T ss_pred             EEeeccCCceEEEEccCCCeee----eeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence            9999999999999999996543    7789999999999887665589999999999999999999998887 5567777


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      +..-    ..+++.+..++.|.+++++++...+....  .                 .-+-.+.+++...+....+.|+-
T Consensus       162 ~Dv~----~pm~vVata~r~i~vynL~n~~te~k~~~--S-----------------pLk~Q~R~va~f~d~~~~alGsi  218 (347)
T KOG0647|consen  162 ADVL----YPMAVVATAERHIAVYNLENPPTEFKRIE--S-----------------PLKWQTRCVACFQDKDGFALGSI  218 (347)
T ss_pred             hhcc----CceeEEEecCCcEEEEEcCCCcchhhhhc--C-----------------cccceeeEEEEEecCCceEeeee
Confidence            7542    25889999999999999986544332111  0                 01124455555555566799999


Q ss_pred             CCeEEEEECCCc--ceEEEEcCCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311          583 DFSIKFWDMDSV--QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       583 dg~i~iwd~~~~--~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                      +|.+-|..++.+  +.-.+++.|..       .-.|++++|+|.-..|++.+.||++.+||-.
T Consensus       219 EGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd  281 (347)
T KOG0647|consen  219 EGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD  281 (347)
T ss_pred             cceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence            999999999886  44445555542       2357889999998999999999999999954

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=2.4e-25  Score=252.13  Aligned_cols=265  Identities=15%  Similarity=0.205  Sum_probs=201.9

Q ss_pred             ccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-C
Q 001311          739 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-N  817 (1102)
Q Consensus       739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d  817 (1102)
                      -..|.....++++..+++++.+.....|+...+.            ..++....|+.........+|...|.+++|+| +
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~------------~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d   87 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGST------------AVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFD   87 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCce------------EEeeccccccCCCCCceEeCCCCCEEEEEEcCCC
Confidence            3455556677787778888888888888753211            12233334443321111234999999999999 8


Q ss_pred             CCeEEEEe-CCeEEEEEcCCC-------ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc
Q 001311          818 DSYVMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH  889 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h  889 (1102)
                      +++|++++ |++|++||+.++       ..+..+.+|...|.+++|+|.++++|++|+.|+.|+|||+.+++.+..+.+|
T Consensus        88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h  167 (493)
T PTZ00421         88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH  167 (493)
T ss_pred             CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence            89999999 999999999764       3467789999999999999944579999999999999999999999999999


Q ss_pred             cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E----eCCeEE
Q 001311          890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V----HETQLA  964 (1102)
Q Consensus       890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~----~d~~i~  964 (1102)
                      ...|.+++|+|+|.+|++++.|++|+|||+.+++.     +....+|..  .....+.|.+++..+++ +    .|+.|+
T Consensus       168 ~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~-----v~tl~~H~~--~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vk  240 (493)
T PTZ00421        168 SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI-----VSSVEAHAS--AKSQRCLWAKRKDLIITLGCSKSQQRQIM  240 (493)
T ss_pred             CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE-----EEEEecCCC--CcceEEEEcCCCCeEEEEecCCCCCCeEE
Confidence            99999999999999999999999999999998653     222333332  13356788998888776 3    368999


Q ss_pred             EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311          965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +||+.+...........+...+....|++|+.+|++++ .|+.|++||+.+++++....
T Consensus       241 lWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~  299 (493)
T PTZ00421        241 LWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS  299 (493)
T ss_pred             EEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee
Confidence            99998754322221112345677778999999999887 59999999999998876654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.9e-26  Score=261.43  Aligned_cols=280  Identities=20%  Similarity=0.305  Sum_probs=225.1

Q ss_pred             CCCCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      +...|.++..+|||.. +|||+  .|+.++||+.+.--..    ...++.   ..+........|.+.|+|+.|||||++
T Consensus        12 ~~~~IfSIdv~pdg~~-~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~---~l~k~l~~m~~h~~sv~CVR~S~dG~~   83 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVK-FATGGQVLDGGIVIWSQDPVLDE----KEEKNE---NLPKHLCTMDDHDGSVNCVRFSPDGSY   83 (942)
T ss_pred             CCeeEEEEEecCCcee-EecCCccccccceeeccccccch----hhhhhc---ccchhheeeccccCceeEEEECCCCCe
Confidence            4567999999999996 99999  8999999997531100    000111   123334457799999999999999999


Q ss_pred             EEEEECCCeEEEEEccC----------C-----ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001311          423 FGVAYSRHIVQIYSYHG----------G-----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  487 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~----------~-----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~  487 (1102)
                      ||+|+.|+.|.||+...          |     +..+....+.+|...|..++|+|++.  +|++++.|++|.|||..+.
T Consensus        84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF  161 (942)
T KOG0973|consen   84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF  161 (942)
T ss_pred             EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence            99999999999999872          0     11235567999999999999999999  8999999999999999999


Q ss_pred             eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCC------CCeeeEEEEccCCc-------
Q 001311          488 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP------GRWCTTMAYSADGT-------  554 (1102)
Q Consensus       488 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~~~~-------  554 (1102)
                      +.+.++.+|.+.|..+.|  ++-|++|++-+.|++|++|++.+-+....+..+      ...+..+.|+|||.       
T Consensus       162 ~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  162 ELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             eeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence            999999999999999998  667799999999999999997765555554443      33678899999998       


Q ss_pred             -------------------eeeeccccCceeEEEEcCC-------------CC----EEEEEeCCCeEEEEECCCcceEE
Q 001311          555 -------------------RTYQGFRKRSLGVVQFDTT-------------KN----RFLAAGDDFSIKFWDMDSVQLLT  598 (1102)
Q Consensus       555 -------------------~~~~~~~~~~i~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~~~~  598 (1102)
                                         ..+.||+. ++.++.|+|.             .+    .+++|+.|++|.||.....+++.
T Consensus       240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~  318 (942)
T KOG0973|consen  240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF  318 (942)
T ss_pred             ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence                               33556666 8899999873             11    56778999999999987777765


Q ss_pred             EEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          599 SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       599 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ....-. ...|..++|+|||..|++++.||+|.++.....
T Consensus       319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            543221 236899999999999999999999999987653

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=3.2e-25  Score=251.11  Aligned_cols=263  Identities=13%  Similarity=0.129  Sum_probs=198.6

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  423 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l  423 (1102)
                      |-..|....+++|+.. +++++.+..+..|+...+..+..      .-..+..+.....+.+|.+.|.+++|+| ++++|
T Consensus        19 ~~~~i~~~~~~~d~~~-~~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCSN-TIACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCCC-cEeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            4567778888999775 67777778888998766543221      1111121222235789999999999999 89999


Q ss_pred             EEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          424 GVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       424 as~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      |+|+.|++|+|||+.++..    ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999987532    1234468899999999999998644 7999999999999999999999999999999


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      |.+++|++  ++.+|++++.|+.|++||++++.....+..|...                    ....+.|.+++..+++
T Consensus       171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~--------------------~~~~~~w~~~~~~ivt  228 (493)
T PTZ00421        171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA--------------------KSQRCLWAKRKDLIIT  228 (493)
T ss_pred             eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC--------------------cceEEEEcCCCCeEEE
Confidence            99999864  5689999999999999999987766555544332                    2223344455556666


Q ss_pred             Ee----CCCeEEEEECCCcc-eEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCC
Q 001311          580 AG----DDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  638 (1102)
Q Consensus       580 ~~----~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  638 (1102)
                      ++    .|+.|++||+++.. .+.....+ ....+....|++++.+|++++ .|+.|++||+.++
T Consensus       229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~  292 (493)
T PTZ00421        229 LGCSKSQQRQIMLWDTRKMASPYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE  292 (493)
T ss_pred             EecCCCCCCeEEEEeCCCCCCceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence            54    48999999998754 33333322 222345567899999999887 5999999999887

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5e-25  Score=216.32  Aligned_cols=268  Identities=16%  Similarity=0.263  Sum_probs=217.0

Q ss_pred             CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC--CCcEEEEEeecce
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDE  881 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~  881 (1102)
                      ....|.++.|+.+|.++++++ |.++++||..++++++++..+.-.+..+.|.. ..+.+..++.  |.+|+..++.+.+
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth-~~~~~i~sStk~d~tIryLsl~dNk   91 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTH-HSNTVIHSSTKEDDTIRYLSLHDNK   91 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEec-CCceEEEccCCCCCceEEEEeecCc
Confidence            467899999999999999988 78999999999999999998888899999987 5555655665  8899999999999


Q ss_pred             eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001311          882 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  961 (1102)
Q Consensus       882 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~  961 (1102)
                      .++.+.||...|++|+.+|-+..+++++.|++|++||++..+.+..  +...        .-..++|+|+|-++|++.++
T Consensus        92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l~~~--------~~pi~AfDp~GLifA~~~~~  161 (311)
T KOG1446|consen   92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--LNLS--------GRPIAAFDPEGLIFALANGS  161 (311)
T ss_pred             eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--EecC--------CCcceeECCCCcEEEEecCC
Confidence            9999999999999999999999999999999999999996554322  1111        22568999999999997444


Q ss_pred             -eEEEEEcCCc--eEeeeeccC-CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCccc
Q 001311          962 -QLAIFETTKL--ECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1037 (1102)
Q Consensus       962 -~i~iwd~~~~--~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 1037 (1102)
                       .|++||++.-  ....++... +-....+.|.|||||++|+.++..+.+++.|.-+|.....+.       ++....-.
T Consensus       162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs-------~~~~~~~~  234 (311)
T KOG1446|consen  162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFS-------GYPNAGNL  234 (311)
T ss_pred             CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEe-------eccCCCCc
Confidence             9999999864  344444433 346789999999999999999999999999999999888887       33333345


Q ss_pred             ceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccccCCCCCCCCCCCCCCCCCC
Q 001311         1038 PLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPPVDNGSTSSMPATPPV 1092 (1102)
Q Consensus      1038 ~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1092 (1102)
                      +++.+|+| |++++++|+.||+|.+|+++++........| .++..+-+...|..
T Consensus       235 ~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~  287 (311)
T KOG1446|consen  235 PLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRY  287 (311)
T ss_pred             ceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCce
Confidence            67899999 7999999999999999999999844333333 44444444444443

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-26  Score=218.28  Aligned_cols=252  Identities=13%  Similarity=0.257  Sum_probs=210.7

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      ....+.-.+.+..|+|++.....+++++.||+++|||......                  +...++.|..+|.++.|++
T Consensus        53 e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~  114 (311)
T KOG0277|consen   53 ECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNT  114 (311)
T ss_pred             EEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEecccc
Confidence            4445556789999999999888899999999999999543221                  2225889999999999999


Q ss_pred             -CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311          419 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       419 -dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                       +++.+++++.|++|++|+..-+..+.   ++.||...|...+|+|.... ++++++.|+++++||++.......+..|.
T Consensus       115 ~~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~  190 (311)
T KOG0277|consen  115 VRRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHN  190 (311)
T ss_pred             ccceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEecc
Confidence             77788889999999999998876555   69999999999999998777 89999999999999999755555588999


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  576 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  576 (1102)
                      ..|.++.|+.. +..++++|+.|+.|+.||++..+ .+.++.+|+-.|..+.|+|...                    ..
T Consensus       191 ~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~--------------------~l  249 (311)
T KOG0277|consen  191 SEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHA--------------------SL  249 (311)
T ss_pred             ceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchh--------------------hH
Confidence            99999999754 44799999999999999999854 4567888888899999988765                    56


Q ss_pred             EEEEeCCCeEEEEECCCc-ceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEc
Q 001311          577 FLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       577 l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~  635 (1102)
                      |++++.|-++||||...+ ..+.+...|  +.-+..+.|++ ++.++|+++.|+.++||+.
T Consensus       250 LaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence            899999999999999844 345555544  34678889988 7889999999999999984

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.95  E-value=2.9e-26  Score=222.00  Aligned_cols=248  Identities=13%  Similarity=0.210  Sum_probs=201.8

Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                      .|.+.|..+.|.|....|++++.|+++++||+........                    ...+   ....+|.++.|.|
T Consensus       170 DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--------------------~K~~---qd~~~vrsiSfHP  226 (430)
T KOG0640|consen  170 DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--------------------FKVF---QDTEPVRSISFHP  226 (430)
T ss_pred             hccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH--------------------HHHh---hccceeeeEeecC
Confidence            3889999999999999999999999999999854211000                    0001   1467899999999


Q ss_pred             CCCeEEEEeC-CeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-cccc-
Q 001311          817 NDSYVMSASG-GKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHS-  890 (1102)
Q Consensus       817 d~~~las~sd-g~I~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~-  890 (1102)
                      .|.+|++|.| .++++||+++.++...-   .+|.+.|+++.+++ .+++.++|+.||.|++||-.+++|+.++ .+|. 
T Consensus       227 sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g  305 (430)
T KOG0640|consen  227 SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG  305 (430)
T ss_pred             CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCC
Confidence            9999999995 78999999998886553   46889999999999 9999999999999999999999999888 4565 


Q ss_pred             ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEc
Q 001311          891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFET  968 (1102)
Q Consensus       891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~  968 (1102)
                      ..|.+..|..+|+++.+.|.|..+++|++.+++....-.-.-..|..   .--+...|.....|++.-  ..+.++-||.
T Consensus       306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq---~~rtqAvFNhtEdyVl~pDEas~slcsWda  382 (430)
T KOG0640|consen  306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ---KHRTQAVFNHTEDYVLFPDEASNSLCSWDA  382 (430)
T ss_pred             ceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch---hhhhhhhhcCccceEEccccccCceeeccc
Confidence            46899999999999999999999999999997653322111111111   122566788888887774  4578999999


Q ss_pred             CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311          969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus       969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
                      +++..+..+.. +|.+.+..+.-||.+.-+++|+.|..+|+|--
T Consensus       383 Rtadr~~l~sl-gHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  383 RTADRVALLSL-GHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             cchhhhhhccc-CCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            99988877765 89999999999999999999999999999963

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.7e-26  Score=245.56  Aligned_cols=253  Identities=19%  Similarity=0.263  Sum_probs=205.7

Q ss_pred             CCCCee---EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          345 QGSSPM---SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       345 h~~~v~---~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      |...|.   ++..++.+...|.||+.||.|++|++.......            +.++ ...+..|.+.|+.++...+|+
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~------------s~~~-~asme~HsDWVNDiiL~~~~~   86 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEP------------STPY-IASMEHHSDWVNDIILCGNGK   86 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCc------------ccch-hhhhhhhHhHHhhHHhhcCCC
Confidence            344444   455554443359999999999999986543321            1111 124788999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEE-cCCCCeeEEEEecCCCcEEEEeCCCCe--eeE-------
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF-SHPNKQLCVITCGDDKTIKVWDATNGA--KQY-------  491 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~-s~d~~~~~l~s~~~d~~i~vWd~~~~~--~~~-------  491 (1102)
                      .|+++|.|-+|++|+...+. ...+.++..|.+-|.|++. .++..  +++|||-|+.|.+||+.+|.  .+.       
T Consensus        87 tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~  163 (735)
T KOG0308|consen   87 TLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTV  163 (735)
T ss_pred             ceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhcccccc
Confidence            99999999999999998774 1233368889999999999 56655  89999999999999999883  232       


Q ss_pred             -Eee-cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          492 -IFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       492 -~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                       .+. |+...|++++.  .++|..|++|+..+.+++||.++.+.+..+.+|...|..+..+.||+               
T Consensus       164 ~sl~sG~k~siYSLA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt---------------  226 (735)
T KOG0308|consen  164 NSLGSGPKDSIYSLAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGT---------------  226 (735)
T ss_pred             ccCCCCCccceeeeec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCC---------------
Confidence             223 78889999986  45667999999999999999999999988888887777777666664               


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                            .+++++.||+|++||+...+++.++..|..  .|.++..+|+-..+++|+.||.|..-|+++.
T Consensus       227 ------~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  227 ------RLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ------eEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence                  699999999999999999999999988865  6999999999999999999999999888775

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=8.4e-26  Score=233.60  Aligned_cols=221  Identities=20%  Similarity=0.298  Sum_probs=165.8

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCce-eeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIK  480 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~-~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~  480 (1102)
                      .+.+|...|.++++.|.|.+|++|+.|.+|++||+..-.. ++....+. .....|.++.|++.|.++++++|  ....+
T Consensus       162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~aqak  239 (641)
T KOG0772|consen  162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--SAQAK  239 (641)
T ss_pred             eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--Cccee
Confidence            3789999999999999999999999999999999975332 11111222 23457999999999997555554  45789


Q ss_pred             EEeCCCCeeeEEe-------------ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeE
Q 001311          481 VWDATNGAKQYIF-------------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTT  546 (1102)
Q Consensus       481 vWd~~~~~~~~~~-------------~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~  546 (1102)
                      |+| +.|..+..+             +||...+++.||++... ..+++++.||++|+||+...+... .+....     
T Consensus       240 l~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~-----  312 (641)
T KOG0772|consen  240 LLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP-----  312 (641)
T ss_pred             EEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeecc-----
Confidence            999 666554433             58999999999998665 579999999999999998754332 221110     


Q ss_pred             EEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce---EEEEcCCCCCCCcCeEEEcCCCCEEEE
Q 001311          547 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAV  623 (1102)
Q Consensus       547 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~  623 (1102)
                                 .+...-.++.++|++++++|++|+.||.|.+|+..+...   ...-..|.....|+|+.||+||++|++
T Consensus       313 -----------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS  381 (641)
T KOG0772|consen  313 -----------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS  381 (641)
T ss_pred             -----------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhh
Confidence                       111223677788888999999999999999999754321   222344554458999999999999999


Q ss_pred             EECCCcEEEEEccCCcccee
Q 001311          624 STNDNGIKILATSDGIRLLR  643 (1102)
Q Consensus       624 ~~~dg~i~iwd~~~~~~~~~  643 (1102)
                      -+.|+++++||++..++++.
T Consensus       382 Rg~D~tLKvWDLrq~kkpL~  401 (641)
T KOG0772|consen  382 RGFDDTLKVWDLRQFKKPLN  401 (641)
T ss_pred             ccCCCceeeeeccccccchh
Confidence            99999999999987755443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=232.80  Aligned_cols=296  Identities=16%  Similarity=0.236  Sum_probs=224.2

Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                      .+|...|.++++.|.|.++++|+-|..|++||+..-+.+.                  ........  .....|.++.|+
T Consensus       164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------------~~fr~l~P--~E~h~i~sl~ys  223 (641)
T KOG0772|consen  164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------------RSFRQLQP--CETHQINSLQYS  223 (641)
T ss_pred             cCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------------hhhhccCc--ccccccceeeec
Confidence            4578889999999999999999999999999974321100                  00000111  146679999999


Q ss_pred             cCCCeEEEEe-CCeEEEEEcCCCceeee------------ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce-
Q 001311          816 KNDSYVMSAS-GGKISLFNMMTFKTMAT------------FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-  881 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~~~~~~~------------~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-  881 (1102)
                      +.|..|++.+ ....+|+|....+....            -+||...++|.+|+|.....+++++.||+++|||+..-+ 
T Consensus       224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~  303 (641)
T KOG0772|consen  224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS  303 (641)
T ss_pred             CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence            9999888887 78899999765544332            357888999999999878899999999999999997643 


Q ss_pred             eeeee-----ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311          882 VKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  956 (1102)
Q Consensus       882 ~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  956 (1102)
                      .+..+     .+-.-.++.++|++||+++|.|+.||.|.+|+..+.....  ...+...|.. ...|+++.||+||++|+
T Consensus       304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p--~~~vk~AH~~-g~~Itsi~FS~dg~~Ll  380 (641)
T KOG0772|consen  304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRP--VMKVKDAHLP-GQDITSISFSYDGNYLL  380 (641)
T ss_pred             heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCccccc--ceEeeeccCC-CCceeEEEeccccchhh
Confidence            22333     2344568999999999999999999999999985433221  2223333332 24799999999999999


Q ss_pred             E-EeCCeEEEEEcCCce-EeeeeccCCCCCCeeEEEEcCCCcEEEEEeC------CCeEEEEEcCCceeEEEeCCCcccC
Q 001311          957 V-VHETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFL------DATVCVFSAANLKLRCRINPSAYLP 1028 (1102)
Q Consensus       957 ~-~~d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~------Dg~I~vwd~~~~~~~~~~~~~~~~~ 1028 (1102)
                      + +.|+++++||++..+ ++..+..-....+-+.++||||.++|++|+.      .|++++||..+.+.+.++.+.    
T Consensus       381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~----  456 (641)
T KOG0772|consen  381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS----  456 (641)
T ss_pred             hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence            9 899999999998754 3333322122456788999999999999874      478999999999999998733    


Q ss_pred             CCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311         1029 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1029 ~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                       +     ..++.+.|+| .=+.|.+|+.||+++|+--
T Consensus       457 -~-----aSvv~~~Whp-kLNQi~~gsgdG~~~vyYd  486 (641)
T KOG0772|consen  457 -T-----ASVVRCLWHP-KLNQIFAGSGDGTAHVYYD  486 (641)
T ss_pred             -C-----ceEEEEeecc-hhhheeeecCCCceEEEEC
Confidence             1     3345899999 4688999999999997643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=7.2e-25  Score=213.38  Aligned_cols=313  Identities=15%  Similarity=0.198  Sum_probs=212.0

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc-----eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  477 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~  477 (1102)
                      .+++|.+.|++++||.||++||+++.|++|+||+++.-.     +++...    .-+--+.++|+||-+. +++++-...
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv----e~dhpT~V~FapDc~s-~vv~~~~g~  155 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV----EYDHPTRVVFAPDCKS-VVVSVKRGN  155 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc----cCCCceEEEECCCcce-EEEEEccCC
Confidence            699999999999999999999999999999999987532     122111    1234678999999886 566666667


Q ss_pred             cEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311          478 TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       478 ~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      ++++|-+...+. ..+.-|.-.+..+.|                       ..        .|.-               
T Consensus       156 ~l~vyk~~K~~d-G~~~~~~v~~D~~~f-----------------------~~--------kh~v---------------  188 (420)
T KOG2096|consen  156 KLCVYKLVKKTD-GSGSHHFVHIDNLEF-----------------------ER--------KHQV---------------  188 (420)
T ss_pred             EEEEEEeeeccc-CCCCccccccccccc-----------------------ch--------hccc---------------
Confidence            788887543221 001101111111111                       00        0000               


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                            .+..+-+..++.++++++.|..|.+|+++ |+.+..+.....  .-...+.||+|+++++++..-.|++|.+.-
T Consensus       189 ------~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--~n~~aavSP~GRFia~~gFTpDVkVwE~~f  259 (420)
T KOG2096|consen  189 ------DIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--SNYDAAVSPDGRFIAVSGFTPDVKVWEPIF  259 (420)
T ss_pred             ------ceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccc--cccceeeCCCCcEEEEecCCCCceEEEEEe
Confidence                  11112222234578889999999999997 888887764433  345689999999999999999999997532


Q ss_pred             CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311          638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  717 (1102)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w  717 (1102)
                      +      -.|...                                                             ...|++
T Consensus       260 ~------kdG~fq-------------------------------------------------------------ev~rvf  272 (420)
T KOG2096|consen  260 T------KDGTFQ-------------------------------------------------------------EVKRVF  272 (420)
T ss_pred             c------cCcchh-------------------------------------------------------------hhhhhh
Confidence            2      111000                                                             112222


Q ss_pred             ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccc-cCCCCcccccccceeccCCCcccc
Q 001311          718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE-RNSSGKATASVAPQLWQPPSGIMM  796 (1102)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~  796 (1102)
                      .+                .+|...|..++|+++.+++++.+.||.+++||.+-.- ...+.+.+..          |.  
T Consensus       273 ~L----------------kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~----------g~--  324 (420)
T KOG2096|consen  273 SL----------------KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKE----------GS--  324 (420)
T ss_pred             ee----------------ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhc----------CC--
Confidence            22                3499999999999999999999999999999975321 1111111111          11  


Q ss_pred             ccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          797 TNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       797 ~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                       ..+..  ..+....++++|+|+.||......++++..++++..-++ ..|...|.+++|++ +|+++|+++ |..++++
T Consensus       325 -~pl~a--ag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~  399 (420)
T KOG2096|consen  325 -APLHA--AGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATCG-DRYVRVI  399 (420)
T ss_pred             -cchhh--cCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeeec-ceeeeee
Confidence             01111  233445899999999999999999999999998876665 45888999999999 999999987 7788887


Q ss_pred             E
Q 001311          876 N  876 (1102)
Q Consensus       876 d  876 (1102)
                      .
T Consensus       400 ~  400 (420)
T KOG2096|consen  400 R  400 (420)
T ss_pred             c
Confidence            5

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.4e-25  Score=214.27  Aligned_cols=320  Identities=16%  Similarity=0.231  Sum_probs=230.2

Q ss_pred             EEEEECCCcceEE-----EEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          586 IKFWDMDSVQLLT-----SIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       586 i~iwd~~~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      ..-|+....+..+     .+++|  ...|++++|+.||++|++++.|++|++|++.+-.     .+.|...         
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH--~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~-----~~eHr~~---------  126 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGH--KKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFE-----NKEHRCI---------  126 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhcc--CCceeeeEEcCCCceeEEEeCCceEEEEecchhh-----hhhhhHh---------
Confidence            4445554444333     33444  4589999999999999999999999999987631     1111100         


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                           ....    ..+
T Consensus       127 ---------------------------------------------------------------------R~nv----e~d  133 (420)
T KOG2096|consen  127 ---------------------------------------------------------------------RQNV----EYD  133 (420)
T ss_pred             ---------------------------------------------------------------------hccc----cCC
Confidence                                                                                 0000    123


Q ss_pred             ceEEEEEccCCceEEEeec-CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          741 KISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      ..+.+.|+||-+.++.... ...+++|.+....-   |...-.  ..-||-.  .     + ...|.-.+..+-...+++
T Consensus       134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~~--~v~~D~~--~-----f-~~kh~v~~i~iGiA~~~k  200 (420)
T KOG2096|consen  134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSHH--FVHIDNL--E-----F-ERKHQVDIINIGIAGNAK  200 (420)
T ss_pred             CceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCcc--ccccccc--c-----c-chhcccceEEEeecCCce
Confidence            5678899999887666554 57899998743211   111100  0111100  0     0 012666777788888999


Q ss_pred             eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec---c-----eeeeeecccc
Q 001311          820 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---D-----EVKSKLKGHS  890 (1102)
Q Consensus       820 ~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~-----~~~~~l~~h~  890 (1102)
                      +|++++ |..|.+|+++ |+.+..+......-+..+.|| +|++||+++----|+||.+--   |     ..+..|+||.
T Consensus       201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~  278 (420)
T KOG2096|consen  201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ  278 (420)
T ss_pred             EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence            999999 8999999998 888888887777788899999 999999999999999999742   2     2345689999


Q ss_pred             ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC---CCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001311          891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR---TPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  967 (1102)
Q Consensus       891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd  967 (1102)
                      ..|.+++||++.+.++|.+.||+++|||++-.-.....+.....+.   ....+....+.++|+|+.||++....+++|.
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~  358 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA  358 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence            9999999999999999999999999999874322111111111110   0111234589999999999999999999999


Q ss_pred             cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                      .++|+....+. ..|...|.+++|++||+++++++ |..++|..
T Consensus       359 se~g~~~~~~e-~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  359 SEDGKDYPELE-DIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             cccCccchhHH-HhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            99998877765 47899999999999999999997 88888875

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.8e-25  Score=240.25  Aligned_cols=273  Identities=19%  Similarity=0.275  Sum_probs=227.8

Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311          351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  430 (1102)
Q Consensus       351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  430 (1102)
                      -+.|+..+  +||+|.. ..|++|+..+++....                   ...+.+.|+++.|+++|.+||+|..+|
T Consensus       182 lldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~g  239 (484)
T KOG0305|consen  182 LLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSDG  239 (484)
T ss_pred             HhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecCC
Confidence            35677444  3666652 6899999999886542                   333478999999999999999999999


Q ss_pred             eEEEEEccCCceeeeEEEeec-cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE-eecCCCCeEEEeeeec
Q 001311          431 IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHK  508 (1102)
Q Consensus       431 ~v~vwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~-~~~h~~~v~~v~~~~~  508 (1102)
                      .|.|||..+.+.++   .+.+ |...|.+++|.  +.  .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+  
T Consensus       240 ~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws--  310 (484)
T KOG0305|consen  240 TVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS--  310 (484)
T ss_pred             eEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC--
Confidence            99999999877665   4667 99999999998  44  699999999999999998877655 89999999999984  


Q ss_pred             CCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe--CCCeE
Q 001311          509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSI  586 (1102)
Q Consensus       509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i  586 (1102)
                      .++.++++|+.|+.+.|||....+....+..|...|..++|+|-..                    +.||+|+  .|+.|
T Consensus       311 ~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~--------------------~lLAsGGGs~D~~i  370 (484)
T KOG0305|consen  311 PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS--------------------GLLATGGGSADRCI  370 (484)
T ss_pred             CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCcc--------------------CceEEcCCCcccEE
Confidence            5668999999999999999988899999999999999999998665                    5688865  69999


Q ss_pred             EEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE--ECCCcEEEEEccCCccceeecccccccccccCCCCCCCcc
Q 001311          587 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS--TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  664 (1102)
Q Consensus       587 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1102)
                      ++||..+++.+..+....   .|.++.|++..+-|+++  ..++.|.||+..+. ..+..+                   
T Consensus       371 ~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l-------------------  427 (484)
T KOG0305|consen  371 KFWNTNTGARIDSVDTGS---QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAEL-------------------  427 (484)
T ss_pred             EEEEcCCCcEecccccCC---ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeee-------------------
Confidence            999999999998887544   49999999988777664  45678899987664 222222                   


Q ss_pred             cchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEE
Q 001311          665 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  744 (1102)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~  744 (1102)
                                                                                             .+|..+|..
T Consensus       428 -----------------------------------------------------------------------~gH~~RVl~  436 (484)
T KOG0305|consen  428 -----------------------------------------------------------------------LGHTSRVLY  436 (484)
T ss_pred             -----------------------------------------------------------------------cCCcceeEE
Confidence                                                                                   348889999


Q ss_pred             EEEccCCceEEEeecCceEEeeec
Q 001311          745 LIFTNSGNAILALASNAIHLLWKW  768 (1102)
Q Consensus       745 ~~~s~~g~~l~~~~~dg~i~iw~~  768 (1102)
                      ++++|||..+++++.|.++++|++
T Consensus       437 la~SPdg~~i~t~a~DETlrfw~~  460 (484)
T KOG0305|consen  437 LALSPDGETIVTGAADETLRFWNL  460 (484)
T ss_pred             EEECCCCCEEEEecccCcEEeccc
Confidence            999999999999999999999986

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.7e-25  Score=217.18  Aligned_cols=249  Identities=16%  Similarity=0.320  Sum_probs=211.0

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      ...+|++.|+.|+...... ++.+++.|.+.+||.+++|.++..                   +.||.+.|+++.|++.+
T Consensus       143 e~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh~s~  202 (481)
T KOG0300|consen  143 ELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFHNSG  202 (481)
T ss_pred             hhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEecccc
Confidence            3557999999999887766 799999999999999999999984                   88999999999999999


Q ss_pred             CeEEEEECCCeEEEEEcc------C------------------------------Ccee-eeEEEeeccccCEEEEEEcC
Q 001311          421 SLFGVAYSRHIVQIYSYH------G------------------------------GDEV-RQHLEIDAHVGGVNDIAFSH  463 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~------~------------------------------~~~~-~~~~~l~~h~~~V~~v~~s~  463 (1102)
                      .++++++.|++..||...      .                              +..+ .++..|.+|.+.|.+..|..
T Consensus       203 ~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~  282 (481)
T KOG0300|consen  203 LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA  282 (481)
T ss_pred             ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc
Confidence            999999999999999621      0                              0011 23556899999999999999


Q ss_pred             CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCC
Q 001311          464 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGR  542 (1102)
Q Consensus       464 d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~  542 (1102)
                      .|+  -+++++.|.+..+||+++|+.+..+.||....+.++-++.  ..++++.+.|.+.++||++.. .....|.+|..
T Consensus       283 gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd  358 (481)
T KOG0300|consen  283 GGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD  358 (481)
T ss_pred             Ccc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeeccccc
Confidence            999  5999999999999999999999999999999998887554  478999999999999999843 33456788888


Q ss_pred             eeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEEcCCCCCCCcCeEEEcCCCCEE
Q 001311          543 WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDGCLL  621 (1102)
Q Consensus       543 ~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l  621 (1102)
                      .|++..|..+.+                      +++|++|.+|++||+++.+ .+.++....   .++.++.+..+..+
T Consensus       359 tVTS~vF~~dd~----------------------vVSgSDDrTvKvWdLrNMRsplATIRtdS---~~NRvavs~g~~iI  413 (481)
T KOG0300|consen  359 TVTSVVFNTDDR----------------------VVSGSDDRTVKVWDLRNMRSPLATIRTDS---PANRVAVSKGHPII  413 (481)
T ss_pred             ceeEEEEecCCc----------------------eeecCCCceEEEeeeccccCcceeeecCC---ccceeEeecCCceE
Confidence            888888877765                      9999999999999998754 455655433   58889999988899


Q ss_pred             EEEECCCcEEEEEccCC
Q 001311          622 AVSTNDNGIKILATSDG  638 (1102)
Q Consensus       622 ~~~~~dg~i~iwd~~~~  638 (1102)
                      +.--.+..|++||++..
T Consensus       414 AiPhDNRqvRlfDlnG~  430 (481)
T KOG0300|consen  414 AIPHDNRQVRLFDLNGN  430 (481)
T ss_pred             EeccCCceEEEEecCCC
Confidence            99888999999998654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=8e-25  Score=213.43  Aligned_cols=239  Identities=21%  Similarity=0.227  Sum_probs=201.9

Q ss_pred             CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc--EEEEEeCCCcEEEEEeecc
Q 001311          804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~v~vwd~~~~  880 (1102)
                      .|...|+++++  ++.++|+|+ |.+|+|||+.....+..+-.|.+.|+++.|.+ +..  .|++|++||.|.+|+..+.
T Consensus        41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W  117 (362)
T KOG0294|consen   41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW  117 (362)
T ss_pred             ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence            48999999998  678999999 99999999999999999999999999999998 553  8999999999999999999


Q ss_pred             eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeC
Q 001311          881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE  960 (1102)
Q Consensus       881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d  960 (1102)
                      +++..+++|.+.|+.|+.+|.+++-++.+.|+.++.||+-.|+......+..         ..+.+.|+|.|.+++++..
T Consensus       118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~~  188 (362)
T KOG0294|consen  118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSGR  188 (362)
T ss_pred             EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEec
Confidence            9999999999999999999999999999999999999999877533222221         2356999999999999888


Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceE
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1040 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1040 (1102)
                      ..|-||.+.+......+..   ...+.++.|- ++..|++|.+|+.|++||.+++...+.+.       +|... |-  +
T Consensus       189 ~~i~i~q~d~A~v~~~i~~---~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~-------AH~~R-VK--~  254 (362)
T KOG0294|consen  189 NKIDIYQLDNASVFREIEN---PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFL-------AHENR-VK--D  254 (362)
T ss_pred             cEEEEEecccHhHhhhhhc---cccceeeeec-CCceEEEecCCceEEEeccCCCccceeee-------cchhh-ee--e
Confidence            8999999998877666542   3467777776 66788999999999999999988877666       44333 55  4


Q ss_pred             EE-ecCCCCCEEEEEecCCcEEEEeccCC
Q 001311         1041 IA-AHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1041 v~-f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                      +. |...++.+|+|+|+||.|+|||+...
T Consensus       255 i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  255 IASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eEEEecCCceEEEEeccCceEEEEEcccc
Confidence            44 33336789999999999999999877

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=6e-26  Score=241.53  Aligned_cols=367  Identities=16%  Similarity=0.196  Sum_probs=267.3

Q ss_pred             EEEEc-cCCCeEEEEECCCeEEEEEccCCcee---eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-
Q 001311          413 RVIWS-PDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-  487 (1102)
Q Consensus       413 ~l~~s-pdg~~las~~~d~~v~vwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-  487 (1102)
                      .+..+ |+++||.+||.||.|++|++......   .....+..|.+.|+.++...+++  .|+++|.|-+|++|+...+ 
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~  106 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN  106 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence            44444 37788999999999999998754331   12346888999999999999998  6999999999999999988 


Q ss_pred             -eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311          488 -AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       488 -~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                       -|..++..|...|.|++.- ..+..++++||.|+.|.+||+.++.....                              
T Consensus       107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~------------------------------  155 (735)
T KOG0308|consen  107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLV------------------------------  155 (735)
T ss_pred             chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhh------------------------------
Confidence             6788899999999999873 45557999999999999999987432100                              


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311          567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                                   ++. ..+..=++..          +....|.+++..+.|..+++|+..+.+++||.++..+.++ ++
T Consensus       156 -------------~s~-n~~t~~sl~s----------G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimk-Lr  210 (735)
T KOG0308|consen  156 -------------ASF-NNVTVNSLGS----------GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMK-LR  210 (735)
T ss_pred             -------------hhc-cccccccCCC----------CCccceeeeecCCcceEEEecCcccceEEeccccccceee-ee
Confidence                         000 0011111111          2344688899999999999999999999999877732221 11


Q ss_pred             cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCC
Q 001311          647 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  726 (1102)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~  726 (1102)
                                                                                                      
T Consensus       211 --------------------------------------------------------------------------------  210 (735)
T KOG0308|consen  211 --------------------------------------------------------------------------------  210 (735)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC
Q 001311          727 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE  806 (1102)
Q Consensus       727 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  806 (1102)
                                                                                                   +|.
T Consensus       211 -----------------------------------------------------------------------------GHT  213 (735)
T KOG0308|consen  211 -----------------------------------------------------------------------------GHT  213 (735)
T ss_pred             -----------------------------------------------------------------------------ccc
Confidence                                                                                         266


Q ss_pred             CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311          807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      ..|.++..+.||..+++++ ||+|++||+...+|+.++..|...|.++..+| +-..+.+|+.||.|+.=|+.+......
T Consensus       214 dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tl  292 (735)
T KOG0308|consen  214 DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTL  292 (735)
T ss_pred             cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheE
Confidence            6677777888888888887 89999999999999999999999999999999 899999999999999999988432222


Q ss_pred             eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE
Q 001311          886 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI  965 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~i  965 (1102)
                      +-....+|..+..+.+.+-+-+++.|+.|+-|..+.                       ...+++.|.+...+.+....+
T Consensus       293 ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~-----------------------~~~l~~s~~~~~~~T~~~~~~  349 (735)
T KOG0308|consen  293 ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP-----------------------DIALSVSGDLDFFSTDSNNHS  349 (735)
T ss_pred             eecCCCchhhhhhccccCCceeeeccccceecCCcc-----------------------ccccccCCCCCcccccCCCcc
Confidence            222455677777775555556778899999997654                       123445555544444444444


Q ss_pred             EEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          966 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       966 wd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      ++... ......  +| ...|...++-.|.++++|-...|.+.+||+-.++.+..+.
T Consensus       350 ~~~~~-tp~~vi--~G-g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~g  402 (735)
T KOG0308|consen  350 CDLTN-TPDSVI--PG-GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFG  402 (735)
T ss_pred             ccccC-CCceec--cC-chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcc
Confidence            44321 010111  12 4456666777899999999999999999998776665443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=3.1e-25  Score=238.06  Aligned_cols=238  Identities=17%  Similarity=0.287  Sum_probs=203.9

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEE-EEEcc-C
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR-VIWSP-D  419 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~sp-d  419 (1102)
                      +.+|+..|..+++.++..  ++++|.||++++|+-..++-+..                 ..+.+|.+.|.+ +++-+ |
T Consensus        10 l~gH~~DVr~v~~~~~~~--i~s~sRd~t~~vw~~~~~~~l~~-----------------~~~~~~~g~i~~~i~y~e~~   70 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDGVC--IISGSRDGTVKVWAKKGKQYLET-----------------HAFEGPKGFIANSICYAESD   70 (745)
T ss_pred             eccCccchheeEecCCeE--EeecCCCCceeeeeccCcccccc-----------------eecccCcceeeccceecccc
Confidence            446999999999888873  99999999999999766554432                 246788888888 88886 6


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      +..|++|+.|.+|.+|...+...+.   .|.||+..|.|++...++.   ++|||.|.+++||-  .+++...+.+|+..
T Consensus        71 ~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~as  142 (745)
T KOG0301|consen   71 KGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTAS  142 (745)
T ss_pred             CcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchh
Confidence            6679999999999999999987554   6999999999999888876   89999999999995  57788889999999


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      |+++...+.   +.++|||.|++|++|.-  +....++.+|...|+.+++.+++.                      |++
T Consensus       143 VWAv~~l~e---~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~----------------------flS  195 (745)
T KOG0301|consen  143 VWAVASLPE---NTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH----------------------FLS  195 (745)
T ss_pred             eeeeeecCC---CcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC----------------------eEe
Confidence            999986433   38999999999999954  677888999999999999988865                      999


Q ss_pred             EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311          580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                      ++.||.|+.|++ +|+++..+.+|  ...+.+++...++..++++++|++++||+..
T Consensus       196 csNDg~Ir~w~~-~ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  196 CSNDGSIRLWDL-DGEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ecCCceEEEEec-cCceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence            999999999999 77777777655  4579999988899999999999999999864

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=3.1e-24  Score=243.37  Aligned_cols=235  Identities=14%  Similarity=0.195  Sum_probs=181.4

Q ss_pred             EecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC-CCeEEEEECCCeEEEEEccCCce-
Q 001311          365 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDE-  442 (1102)
Q Consensus       365 g~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g~~las~~~d~~v~vwd~~~~~~-  442 (1102)
                      |+.++.|++|+......+.                   .+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. 
T Consensus        50 GG~~gvI~L~~~~r~~~v~-------------------~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~  110 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVI-------------------KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES  110 (568)
T ss_pred             CCceeEEEeeecCCCceEE-------------------EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            5667788888876544333                   47899999999999996 89999999999999999986432 


Q ss_pred             e----eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEe
Q 001311          443 V----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA  518 (1102)
Q Consensus       443 ~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s  518 (1102)
                      .    .....+.+|...|.+++|+|++.. ++++++.|++|+|||+++++.+..+. |...|.+++|+  ++|.+|++++
T Consensus       111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slsws--pdG~lLat~s  186 (568)
T PTZ00420        111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWN--IKGNLLSGTC  186 (568)
T ss_pred             ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEEC--CCCCEEEEEe
Confidence            1    123357899999999999999874 56899999999999999999888776 66789999985  5668999999


Q ss_pred             CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC----eEEEEECCC-
Q 001311          519 LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF----SIKFWDMDS-  593 (1102)
Q Consensus       519 ~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-  593 (1102)
                      .|+.|++||++++.....+..|.+.+....                +....++++++++++++.|+    .|+|||++. 
T Consensus       187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~----------------v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~  250 (568)
T PTZ00420        187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKN----------------IWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT  250 (568)
T ss_pred             cCCEEEEEECCCCcEEEEEecccCCceeEE----------------EEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence            999999999998877776766655433222                12233456777899887664    799999985 


Q ss_pred             cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          594 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       594 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ++++..+..+.....+......+++.++++|..|+.|++|++..+
T Consensus       251 ~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        251 TSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             CCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC
Confidence            566666654444333333344557899999999999999999765

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=5.4e-24  Score=196.88  Aligned_cols=308  Identities=14%  Similarity=0.134  Sum_probs=226.7

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      ....|.+++|.|.|...+++++.++.+|.....--....+...+..        ...++..  ...-|.+.|.|.+|+|+
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~--------pp~v~~k--r~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQ--------PPSVLCK--RNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccC--------CCeEEee--eccccCccEEEEEecCc
Confidence            5568999999999999999999999998765321000000000000        0001111  11228899999999999


Q ss_pred             CCeEEEEe-CCeEEEEEcCCCcee-----eeecCCCCCeeEEEEecC---CCcEEEEEe-CCCcEEEEEeecceeeeeec
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~-----~~~~~~~~~i~~l~~sp~---d~~~lasg~-~dg~v~vwd~~~~~~~~~l~  887 (1102)
                      |++|++|+ |.+|++...+...+.     .++.-|.+.|..++|-.+   ++.+|++++ .|..|++-|...|+....+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            99999999 899988766543322     346778999999999742   466888765 57789999999999999999


Q ss_pred             cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEE
Q 001311          888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIF  966 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iw  966 (1102)
                      +|.+.|.++ ++-+|-.+++|+.|.+|++||+.-.......- ..+.+.......|..++..|.|++|+++ .|....+|
T Consensus       181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~-~~~~~~glessavaav~vdpsgrll~sg~~dssc~ly  258 (350)
T KOG0641|consen  181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD-NDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLY  258 (350)
T ss_pred             CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeecc-CcccCCCcccceeEEEEECCCcceeeeccCCCceEEE
Confidence            999999876 34468899999999999999998644322111 1111222223578999999999999997 78899999


Q ss_pred             EcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCC
Q 001311          967 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus       967 d~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
                      |++.++.++.+.  .|+..|.++.|||...||++++.|..|++-|+... +..++.  ......|...   ++.+.|+|+
T Consensus       259 dirg~r~iq~f~--phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~--~~vv~ehkdk---~i~~rwh~~  330 (350)
T KOG0641|consen  259 DIRGGRMIQRFH--PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELP--IMVVAEHKDK---AIQCRWHPQ  330 (350)
T ss_pred             EeeCCceeeeeC--CCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCc--eEEEEeccCc---eEEEEecCc
Confidence            999999999886  78999999999999999999999999999998643 222211  1111233344   446999997


Q ss_pred             CCCEEEEEecCCcEEEEecc
Q 001311         1047 EPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1047 d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      | ..+++.+.|.++.+|-++
T Consensus       331 d-~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  331 D-FSFISSSADKTATLWALN  349 (350)
T ss_pred             c-ceeeeccCcceEEEeccC
Confidence            5 678888999999999864

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=6.8e-25  Score=224.86  Aligned_cols=292  Identities=16%  Similarity=0.196  Sum_probs=224.4

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeE--------------EEe-eccccCEEEEEEcCCCCe
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH--------------LEI-DAHVGGVNDIAFSHPNKQ  467 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~--------------~~l-~~h~~~V~~v~~s~d~~~  467 (1102)
                      .+..|.-+|.|++++||+++.++++.|++|.=|++.+|+..+.+              ..- .+|...|.+++.++||+ 
T Consensus       137 ~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-  215 (479)
T KOG0299|consen  137 VIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-  215 (479)
T ss_pred             eeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc-
Confidence            57889999999999999999999999999999999988743111              011 37889999999999999 


Q ss_pred             eEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEE
Q 001311          468 LCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM  547 (1102)
Q Consensus       468 ~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~  547 (1102)
                       +|++|+.|..|.|||.++.+.++.+.+|.+.|.+++|-...  ..+++++.|+.|++|+++....+.++-+|...|..+
T Consensus       216 -ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  216 -YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             -EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence             89999999999999999999999999999999999985444  579999999999999999888888888888888877


Q ss_pred             EEccCCceeeeccccCceeEEEEcCCCCEEEE-EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311          548 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  626 (1102)
Q Consensus       548 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  626 (1102)
                      ....-++                      +++ |+.|+++++|++.... ...+.++  ...+-|++|-.+ ..+++|+.
T Consensus       293 daL~reR----------------------~vtVGgrDrT~rlwKi~ees-qlifrg~--~~sidcv~~In~-~HfvsGSd  346 (479)
T KOG0299|consen  293 DALSRER----------------------CVTVGGRDRTVRLWKIPEES-QLIFRGG--EGSIDCVAFIND-EHFVSGSD  346 (479)
T ss_pred             chhcccc----------------------eEEeccccceeEEEeccccc-eeeeeCC--CCCeeeEEEecc-cceeeccC
Confidence            7666554                      555 5599999999995433 3333334  335788888754 56889999


Q ss_pred             CCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccc
Q 001311          627 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI  706 (1102)
Q Consensus       627 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  706 (1102)
                      +|.|.+|++...+.+...-..|.....                                                     
T Consensus       347 nG~IaLWs~~KKkplf~~~~AHgv~~~-----------------------------------------------------  373 (479)
T KOG0299|consen  347 NGSIALWSLLKKKPLFTSRLAHGVIPE-----------------------------------------------------  373 (479)
T ss_pred             CceEEEeeecccCceeEeeccccccCC-----------------------------------------------------
Confidence            999999998877333332222211100                                                     


Q ss_pred             cccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccce
Q 001311          707 TEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQ  786 (1102)
Q Consensus       707 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~  786 (1102)
                                           ..     ...+...|++++..|....+++++.+|.+++|.+..+..             
T Consensus       374 ---------------------~~-----~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r-------------  414 (479)
T KOG0299|consen  374 ---------------------LD-----PVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLR-------------  414 (479)
T ss_pred             ---------------------cc-----ccccccceeeeEecccCceEEecCCCCceEEEEecCCcc-------------
Confidence                                 00     011335789999999999999999999999998743311             


Q ss_pred             eccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe
Q 001311          787 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  825 (1102)
Q Consensus       787 ~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s  825 (1102)
                               ....+....-.+.|++++|+++|+++++|-
T Consensus       415 ---------~i~~l~~ls~~GfVNsl~f~~sgk~ivagi  444 (479)
T KOG0299|consen  415 ---------AINLLYSLSLVGFVNSLAFSNSGKRIVAGI  444 (479)
T ss_pred             ---------ccceeeecccccEEEEEEEccCCCEEEEec
Confidence                     111111122467799999999999888775

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.8e-25  Score=238.47  Aligned_cols=253  Identities=16%  Similarity=0.280  Sum_probs=212.3

Q ss_pred             CCccceeecc-CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCC-CCCCeE
Q 001311          335 LPKTVTRTLN-QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD-PGVSVN  412 (1102)
Q Consensus       335 ~~~~~~~~~~-h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~  412 (1102)
                      ....+..+.. +...|+++.|+++|++ ||+|..+|.|.|||..+.+.+..                   +.+ |...|.
T Consensus       205 ~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rvg  264 (484)
T KOG0305|consen  205 SSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRVG  264 (484)
T ss_pred             CCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCCcCceeE
Confidence            3344444444 3899999999999996 99999999999999988877763                   455 999999


Q ss_pred             EEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311          413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~  492 (1102)
                      +++|+  +..+.+|+.|+.|..+|+...+....  ++.+|...|..++|++|+.  ++++|+.|+.+.|||..+..++..
T Consensus       265 ~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~  338 (484)
T KOG0305|consen  265 SLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFT  338 (484)
T ss_pred             EEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEE
Confidence            99998  88899999999999999998776543  3889999999999999999  799999999999999988899999


Q ss_pred             eecCCCCeEEEeeeecCCccEEEEEe--CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEE
Q 001311          493 FEGHEAPVYSVCPHHKENIQFIFSTA--LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  570 (1102)
Q Consensus       493 ~~~h~~~v~~v~~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  570 (1102)
                      +..|.+.|.+++|+|-.. .+|++|+  .|+.|++||..++..+.... .+..|.++.|++..+                
T Consensus       339 ~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~k----------------  400 (484)
T KOG0305|consen  339 FTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYK----------------  400 (484)
T ss_pred             EeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCC----------------
Confidence            999999999999988766 4788875  59999999999766554433 234455666655554                


Q ss_pred             cCCCCEEEE--EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          571 DTTKNRFLA--AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       571 ~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                           .|++  |..++.|.||++.+.+.+..+.+|..  .|..++++|||..+++|+.|.++++|++-+.
T Consensus       401 -----Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  401 -----ELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             -----EEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence                 4554  44688999999999999999887755  7999999999999999999999999997654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.7e-24  Score=219.67  Aligned_cols=241  Identities=19%  Similarity=0.302  Sum_probs=197.7

Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                      ||...|..+.|+++...+++++.|..|+||.......                   ...    .  ..|..+|+.+...|
T Consensus       259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-------------------~~~----~--~~h~~~V~~ls~h~  313 (506)
T KOG0289|consen  259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-------------------PTS----S--RPHEEPVTGLSLHP  313 (506)
T ss_pred             CcceEEEEEEeccchhheeecCCcceEEeeccccccC-------------------ccc----c--ccccccceeeeecc
Confidence            3667889999999999999999999999998632110                   000    1  12899999999999


Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeeeecCC--CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  893 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V  893 (1102)
                      .|.||++++ |++..+.|++++.++......  .-.+++.+|+| ||.++++|..||.|+|||+.++..+..|.+|+++|
T Consensus       314 tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~v  392 (506)
T KOG0289|consen  314 TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPV  392 (506)
T ss_pred             CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCce
Confidence            999999999 899999999999887665532  33589999999 99999999999999999999999999999999999


Q ss_pred             eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC--
Q 001311          894 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--  970 (1102)
Q Consensus       894 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~--  970 (1102)
                      ..|+|+.+|-|||+++.|+.|++||++.-+...  .+.....     ..+..+.|.+.|++|+.+ .+=+|++++-.+  
T Consensus       393 k~i~FsENGY~Lat~add~~V~lwDLRKl~n~k--t~~l~~~-----~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~  465 (506)
T KOG0289|consen  393 KAISFSENGYWLATAADDGSVKLWDLRKLKNFK--TIQLDEK-----KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS  465 (506)
T ss_pred             eEEEeccCceEEEEEecCCeEEEEEehhhcccc--eeecccc-----ccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence            999999999999999999999999998754322  2222222     258999999999999995 555666666444  


Q ss_pred             ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311          971 LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus       971 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
                      ..++..+  ..|.+..+.+.|..+.+++++++.|..++++.+
T Consensus       466 W~~~~~~--~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  466 WTEIKEL--ADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             ceeeehh--hhcccccceeeecccceEEeeccchhheEEeec
Confidence            3444444  477889999999999999999999999888764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.93  E-value=4.7e-25  Score=226.59  Aligned_cols=269  Identities=14%  Similarity=0.227  Sum_probs=218.7

Q ss_pred             cceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311          338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       338 ~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      ++...+.|.+.|+.+..-|....|+|+++..+.|.|||..+.......         .+...+...+.||...=+.|+|+
T Consensus       116 ~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~---------~~~~~Pdl~L~gH~~eg~glsWn  186 (422)
T KOG0264|consen  116 EISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA---------SGECRPDLRLKGHEKEGYGLSWN  186 (422)
T ss_pred             EEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc---------cccCCCceEEEeecccccccccc
Confidence            455567799999999999999999999999999999998764332210         00112223588999988899999


Q ss_pred             c-CCCeEEEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC--CCeee
Q 001311          418 P-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--NGAKQ  490 (1102)
Q Consensus       418 p-dg~~las~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~--~~~~~  490 (1102)
                      + ..-+|++++.|++|.+||+.....    +.....+.+|...|..++|.+-... ++++++.|+.+.|||++  +.++.
T Consensus       187 ~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~  265 (422)
T KOG0264|consen  187 RQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPS  265 (422)
T ss_pred             cccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCc
Confidence            9 566899999999999999986543    5556678999999999999998877 79999999999999999  56667


Q ss_pred             EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                      ....+|.+.|+|+.|++.. +.+|++||.|++|++||+++.. ++..+..|...|..+.|+|...               
T Consensus       266 ~~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e---------------  329 (422)
T KOG0264|consen  266 HSVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE---------------  329 (422)
T ss_pred             ccccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC---------------
Confidence            7888999999999998755 4799999999999999999864 5668888999999999998876               


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCcceE------------EEEcCCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEcc
Q 001311          570 FDTTKNRFLAAGDDFSIKFWDMDSVQLL------------TSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATS  636 (1102)
Q Consensus       570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~------------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~  636 (1102)
                           ..|++++.|+.+.+||+..-...            ..|...+|...|..+.|+|... .+++.+.|+.+.||...
T Consensus       330 -----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 -----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             -----ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence                 56899999999999999642222            2244455677899999999665 56677889999999875


Q ss_pred             C
Q 001311          637 D  637 (1102)
Q Consensus       637 ~  637 (1102)
                      .
T Consensus       405 ~  405 (422)
T KOG0264|consen  405 E  405 (422)
T ss_pred             c
Confidence            3

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=5.1e-24  Score=206.63  Aligned_cols=207  Identities=18%  Similarity=0.210  Sum_probs=160.7

Q ss_pred             cCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          404 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       404 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      -....+.|.+|+||| ...++++++.|++||+|+++....... +....|.++|.+++|+.||.  .+++|+-|+.+++|
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW   99 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence            455678999999999 666677899999999999987422222 34667999999999999998  79999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      |+.++ .+..+..|.++|..+.|....+-..|++||-|++|++||.+....+.++..++. +.++.              
T Consensus       100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~D--------------  163 (347)
T KOG0647|consen  100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAAD--------------  163 (347)
T ss_pred             EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehh--------------
Confidence            99999 456677799999999987766666899999999999999998777766655432 11111              


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                               -...+++.+..++.|.+|+++++..........-.-.++|++..+|....+.|+-+|.+-|-.+..+
T Consensus       164 ---------v~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~  230 (347)
T KOG0647|consen  164 ---------VLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP  230 (347)
T ss_pred             ---------ccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence                     1124577888999999999987654333221112235789999998888899999999988877654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=4.5e-24  Score=216.65  Aligned_cols=282  Identities=20%  Similarity=0.275  Sum_probs=228.8

Q ss_pred             cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC
Q 001311          454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS  533 (1102)
Q Consensus       454 ~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~  533 (1102)
                      ..+.++...+...  .+++|+.|..+.++|..+++.+..+.||...|+.+.+++..  ..+++++.|..|++|.......
T Consensus       220 pgi~ald~~~s~~--~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~--~~v~~aSad~~i~vws~~~~s~  295 (506)
T KOG0289|consen  220 PGITALDIIPSSS--KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDL--DTVITASADEIIRVWSVPLSSE  295 (506)
T ss_pred             CCeeEEeecCCCC--cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccch--hheeecCCcceEEeeccccccC
Confidence            4678888888745  69999999999999999999999999999999999987655  5899999999999998877666


Q ss_pred             eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEE
Q 001311          534 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIR  613 (1102)
Q Consensus       534 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~  613 (1102)
                      ......|...|+.+                     ..+|.|.||++++.|++..+.|++++..+...........+++.+
T Consensus       296 ~~~~~~h~~~V~~l---------------------s~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~  354 (506)
T KOG0289|consen  296 PTSSRPHEEPVTGL---------------------SLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA  354 (506)
T ss_pred             ccccccccccceee---------------------eeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence            55555555555544                     455555699999999999999999999988877554445688999


Q ss_pred             EcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCC
Q 001311          614 FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN  693 (1102)
Q Consensus       614 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1102)
                      |+|||..+.+|+.||.|+|||+.++. ....                                                 
T Consensus       355 fHpDgLifgtgt~d~~vkiwdlks~~-~~a~-------------------------------------------------  384 (506)
T KOG0289|consen  355 FHPDGLIFGTGTPDGVVKIWDLKSQT-NVAK-------------------------------------------------  384 (506)
T ss_pred             EcCCceEEeccCCCceEEEEEcCCcc-cccc-------------------------------------------------
Confidence            99999999999999999999987661 1110                                                 


Q ss_pred             CCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeecccccc
Q 001311          694 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTER  773 (1102)
Q Consensus       694 ~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~  773 (1102)
                                                                                                      
T Consensus       385 --------------------------------------------------------------------------------  384 (506)
T KOG0289|consen  385 --------------------------------------------------------------------------------  384 (506)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-CCee
Q 001311          774 NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAAT  851 (1102)
Q Consensus       774 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~  851 (1102)
                                                +  .+|.++|..++|+.+|-|+|++. |+.|++||++..+..+++.... .++.
T Consensus       385 --------------------------F--pght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~  436 (506)
T KOG0289|consen  385 --------------------------F--PGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVN  436 (506)
T ss_pred             --------------------------C--CCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccce
Confidence                                      1  12677777788888888888887 6778888888777666665333 3699


Q ss_pred             EEEEecCCCcEEEEEeCCCcEEEEEee--cceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          852 FLAFHPQDNNIIAIGMDDSSIQIYNVR--VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       852 ~l~~sp~d~~~lasg~~dg~v~vwd~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      ++.|.+ .|.+|+.++.|=+|++++-.  ++.++..+..|.+..+++.|..+.++++++|.|..++++.+
T Consensus       437 s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  437 SLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             eEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            999999 89999999888666666633  46788888999999999999999999999999999888764

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.93  E-value=9.2e-24  Score=217.43  Aligned_cols=255  Identities=15%  Similarity=0.216  Sum_probs=200.9

Q ss_pred             cceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311          338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       338 ~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      +..+++.|..-|.++++|...++ +.||+. |.|+|||+......              .+...--...-...|..+..+
T Consensus       411 rq~~tL~HGEvVcAvtIS~~trh-VyTgGk-gcVKVWdis~pg~k--------------~PvsqLdcl~rdnyiRSckL~  474 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNPTRH-VYTGGK-GCVKVWDISQPGNK--------------SPVSQLDCLNRDNYIRSCKLL  474 (705)
T ss_pred             HhhhhhccCcEEEEEEecCCcce-eEecCC-CeEEEeeccCCCCC--------------CccccccccCcccceeeeEec
Confidence            45678889999999999999997 899887 89999999653211              011111122345689999999


Q ss_pred             cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311          418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      |||+.|++|+.-.++.|||+..... +...++..-.-...+++.+||.+  +.+++..||.|.|||+.+...++.|+||+
T Consensus       475 pdgrtLivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGht  551 (705)
T KOG0639|consen  475 PDGRTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT  551 (705)
T ss_pred             CCCceEEeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCC
Confidence            9999999999999999999987643 22223444445678899999999  89999999999999999999999999999


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      +.+.||.+  +.+|..|.+|+.|.+||.||++.+..+.....                      ...|.++.++|++.++
T Consensus       552 DGascIdi--s~dGtklWTGGlDntvRcWDlregrqlqqhdF----------------------~SQIfSLg~cP~~dWl  607 (705)
T KOG0639|consen  552 DGASCIDI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF----------------------SSQIFSLGYCPTGDWL  607 (705)
T ss_pred             CCceeEEe--cCCCceeecCCCccceeehhhhhhhhhhhhhh----------------------hhhheecccCCCccce
Confidence            99999987  56778999999999999999998766543221                      1245556667777899


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +.|-+++.+.+-..... ....+  +.+...|.++.|.+.|+++++.+.|+.+..|...-|
T Consensus       608 avGMens~vevlh~skp-~kyql--hlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG  665 (705)
T KOG0639|consen  608 AVGMENSNVEVLHTSKP-EKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG  665 (705)
T ss_pred             eeecccCcEEEEecCCc-cceee--cccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence            99999999988876443 33333  334457999999999999999999999999986655

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.3e-25  Score=219.75  Aligned_cols=287  Identities=16%  Similarity=0.228  Sum_probs=220.3

Q ss_pred             cCCCCCCeEEEEEccCC-CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          404 VKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg-~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      +.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....++.   ++..|.+.|..|++.. +   .++++|.|++|+.|
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~---~f~AH~G~V~Gi~v~~-~---~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR---TFKAHEGLVRGICVTQ-T---SFFTVGDDKTVKQW  134 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh---eeecccCceeeEEecc-c---ceEEecCCcceeee
Confidence            68999999999999977 889999999999999999987665   5889999999999987 3   48999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      -+.- ..++++.+. ..+..+.-+  ..+..++|||.  .|-+||.....++..+.-....+.++.|+|-.+        
T Consensus       135 k~~~-~p~~tilg~-s~~~gIdh~--~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET--------  200 (433)
T KOG0268|consen  135 KIDG-PPLHTILGK-SVYLGIDHH--RKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET--------  200 (433)
T ss_pred             eccC-Ccceeeecc-ccccccccc--cccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc--------
Confidence            9654 577777643 335555432  22357888874  588899987666666655555555555555544        


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  642 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  642 (1102)
                                  ..|++++.|+.|.+||++.+.++..+...-.   -+.++|+|.+-.++++++|..++.+|++.....+
T Consensus       201 ------------sILas~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  201 ------------SILASCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             ------------hheeeeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccc
Confidence                        3466777999999999999998887754433   4679999988889999999999999987664433


Q ss_pred             eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                      ...                                                                             
T Consensus       266 ~v~-----------------------------------------------------------------------------  268 (433)
T KOG0268|consen  266 NVH-----------------------------------------------------------------------------  268 (433)
T ss_pred             hhh-----------------------------------------------------------------------------
Confidence            332                                                                             


Q ss_pred             CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                                   .+|...|.++.|+|.|+-+++++-|.+|+||..+....                   -....   + 
T Consensus       269 -------------~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S-------------------RdiYh---t-  312 (433)
T KOG0268|consen  269 -------------KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS-------------------RDIYH---T-  312 (433)
T ss_pred             -------------cccceeEEEeccCCCcchhccccccceEEEeecCCCcc-------------------hhhhh---H-
Confidence                         23778899999999999999999999999998643210                   00000   0 


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCcee
Q 001311          803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM  840 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~  840 (1102)
                       .--..|.|+.||.|.+++++|+ |+.|++|.....+.+
T Consensus       313 -kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asekl  350 (433)
T KOG0268|consen  313 -KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKL  350 (433)
T ss_pred             -hhhheeeEEEEeccccEEEecCCCcceeeeecchhhhc
Confidence             0123489999999999999999 799999997654433

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.6e-24  Score=210.42  Aligned_cols=319  Identities=15%  Similarity=0.226  Sum_probs=235.2

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311          565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  644 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  644 (1102)
                      |+-++.....+.+.+++.|.+-+||.+++++++..+.+|.+  .|+++.|++.+.++++++.|++-+||...-....-+.
T Consensus       151 iW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~  228 (481)
T KOG0300|consen  151 IWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSN  228 (481)
T ss_pred             eeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCC
Confidence            44444444445688899999999999999999999987754  8999999999999999999999999964322110000


Q ss_pred             c--ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          645 F--ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       645 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                      .  .+|...                                                  .+.  - ..|.          
T Consensus       229 ~a~~~hSsE--------------------------------------------------eE~--e-~sDe----------  245 (481)
T KOG0300|consen  229 NAPSDHSSE--------------------------------------------------EEE--E-HSDE----------  245 (481)
T ss_pred             CCCCCCCch--------------------------------------------------hhh--h-cccc----------
Confidence            0  000000                                                  000  0 0000          


Q ss_pred             CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                                     |. .-..-....||         .+|++                              ....+. 
T Consensus       246 ---------------~~-~d~d~~~~sD~---------~tiRv------------------------------Pl~~lt-  269 (481)
T KOG0300|consen  246 ---------------HN-RDTDSSEKSDG---------HTIRV------------------------------PLMRLT-  269 (481)
T ss_pred             ---------------cc-cccccccccCC---------ceeee------------------------------eeeeee-
Confidence                           00 00000000111         11221                              111122 


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-c
Q 001311          803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-D  880 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~  880 (1102)
                       +|...|.+..|-..|+.+++++ |.+..+||++++..+..+.+|..+.+.++-+| ..+++++.+.|-+.++||++. -
T Consensus       270 -gH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI  347 (481)
T KOG0300|consen  270 -GHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAI  347 (481)
T ss_pred             -ccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhc
Confidence             3899999999999999999999 99999999999999999999999999999999 899999999999999999984 2


Q ss_pred             eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e
Q 001311          881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H  959 (1102)
Q Consensus       881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~  959 (1102)
                      ..+..|+||.+.|+++.|.-| ..+++|+.|.+|+|||+.....    ++.....    ..++..++.+..+..++.- .
T Consensus       348 ~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRt----dS~~NRvavs~g~~iIAiPhD  418 (481)
T KOG0300|consen  348 QSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRT----DSPANRVAVSKGHPIIAIPHD  418 (481)
T ss_pred             ceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeec----CCccceeEeecCCceEEeccC
Confidence            456789999999999999866 4789999999999999987443    1221111    1478899999999999885 6


Q ss_pred             CCeEEEEEcCCceEeeee--ccCCCCCCeeEEEEcCCCc--EEEEEeCCCeEEEEEcCCc
Q 001311          960 ETQLAIFETTKLECVKQW--VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       960 d~~i~iwd~~~~~~~~~~--~~~~h~~~v~~l~~spd~~--~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      +..|++||++..+..+.-  ...+|...|.|++|..+--  -|++++.|..+.=|++..-
T Consensus       419 NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  419 NRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             CceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            779999999887765544  3468999999999987643  4889999999999998653

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=1.3e-23  Score=238.43  Aligned_cols=243  Identities=14%  Similarity=0.182  Sum_probs=177.3

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      +..+.+|.+.|.+++|+|+...+||+|+.|++|+|||+.++.....           ........+.+|...|.+++|+|
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-----------~i~~p~~~L~gH~~~V~sVaf~P  135 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-----------EIKDPQCILKGHKKKISIIDWNP  135 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-----------ccccceEEeecCCCcEEEEEECC
Confidence            3445579999999999998433699999999999999986532110           00001114679999999999999


Q ss_pred             CCCe-EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311          419 DGSL-FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       419 dg~~-las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      ++.. ||+++.|++|+|||+.+++.+.   .+. |...|.+++|+++|.  +|++++.|+.|+|||+++++.+.++.+|.
T Consensus       136 ~g~~iLaSgS~DgtIrIWDl~tg~~~~---~i~-~~~~V~SlswspdG~--lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        136 MNYYIMCSSGFDSFVNIWDIENEKRAF---QIN-MPKKLSSLKWNIKGN--LLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             CCCeEEEEEeCCCeEEEEECCCCcEEE---EEe-cCCcEEEEEECCCCC--EEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            9876 5789999999999999987543   243 567899999999999  78999999999999999999999999999


Q ss_pred             CCeEEEeeee---cCCccEEEEEeCCC----eEEEEEcCCCCC-eeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          498 APVYSVCPHH---KENIQFIFSTALDG----KIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       498 ~~v~~v~~~~---~~~~~~l~s~s~dg----~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                      +.+.+.++..   .+++.+|++++.|+    +|++||++.... +..+..... .                  +.+....
T Consensus       210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~------------------~~L~p~~  270 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-S------------------APLIPHY  270 (568)
T ss_pred             CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-c------------------cceEEee
Confidence            8776554332   35667888888774    799999986432 222111110 0                  1111122


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC
Q 001311          570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  618 (1102)
Q Consensus       570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~  618 (1102)
                      ..+++.++++|+.|+.|++|++..+. +..+........+.+++|.|+.
T Consensus       271 D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        271 DESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             eCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence            23446778899999999999998764 4444434444567889999964

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=3.7e-25  Score=219.42  Aligned_cols=285  Identities=16%  Similarity=0.261  Sum_probs=217.7

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  527 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd  527 (1102)
                      .|.||.++|.|++=.|..-. .++||+.||.|+|||+.+..++.++..|.+.|..+++..    ..+++++.|++|+.|-
T Consensus        61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            37899999999999988622 699999999999999999999999999999999999854    4689999999999998


Q ss_pred             cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311          528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  607 (1102)
Q Consensus       528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  607 (1102)
                      +... ...++.+                      +..+..+..+..++.++++|+  .|.|||..-..++..+.-.  ..
T Consensus       136 ~~~~-p~~tilg----------------------~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG--~D  188 (433)
T KOG0268|consen  136 IDGP-PLHTILG----------------------KSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWG--AD  188 (433)
T ss_pred             ccCC-cceeeec----------------------cccccccccccccccccccCc--eeeecccccCCccceeecC--CC
Confidence            7652 1111111                      123333444555567888876  4999999888888888643  45


Q ss_pred             CcCeEEEcCC-CCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311          608 ASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  686 (1102)
Q Consensus       608 ~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1102)
                      .|.++.|+|- ...|+++..|+.|.+||++.+ .+++.+.                                        
T Consensus       189 ti~svkfNpvETsILas~~sDrsIvLyD~R~~-~Pl~KVi----------------------------------------  227 (433)
T KOG0268|consen  189 SISSVKFNPVETSILASCASDRSIVLYDLRQA-SPLKKVI----------------------------------------  227 (433)
T ss_pred             ceeEEecCCCcchheeeeccCCceEEEecccC-Cccceee----------------------------------------
Confidence            7999999994 556777779999999999887 3332221                                        


Q ss_pred             cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEee
Q 001311          687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  766 (1102)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw  766 (1102)
                                                                         -...-..++|+|++-.++++..|..++.|
T Consensus       228 ---------------------------------------------------~~mRTN~IswnPeafnF~~a~ED~nlY~~  256 (433)
T KOG0268|consen  228 ---------------------------------------------------LTMRTNTICWNPEAFNFVAANEDHNLYTY  256 (433)
T ss_pred             ---------------------------------------------------eeccccceecCccccceeeccccccceeh
Confidence                                                               11233568899988888999999999999


Q ss_pred             eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec-
Q 001311          767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-  844 (1102)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~-  844 (1102)
                      |+..-.                   ....+   .  .+|.+.|.++.|||.|+-+++|+ |.+|+||....+...-.+. 
T Consensus       257 DmR~l~-------------------~p~~v---~--~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht  312 (433)
T KOG0268|consen  257 DMRNLS-------------------RPLNV---H--KDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT  312 (433)
T ss_pred             hhhhhc-------------------ccchh---h--cccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH
Confidence            874311                   11111   1  23899999999999999999999 9999999998765432221 


Q ss_pred             CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001311          845 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  881 (1102)
Q Consensus       845 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  881 (1102)
                      .-...|.|+.||- |.+++++|++|+.|++|.....+
T Consensus       313 kRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  313 KRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             hhhheeeEEEEec-cccEEEecCCCcceeeeecchhh
Confidence            1134699999999 99999999999999999876443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=4.4e-24  Score=229.34  Aligned_cols=276  Identities=14%  Similarity=0.232  Sum_probs=225.2

Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc-cccCCCCCCCCeeE-EE
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC-FA  813 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~i~~-l~  813 (1102)
                      .+|...|..+++.++. .+++++.||++++|+-..                      ++.+. ..+  .+|.+.|.. ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~----------------------~~~l~~~~~--~~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKG----------------------KQYLETHAF--EGPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccC----------------------cccccceec--ccCcceeeccce
Confidence            5688889888877666 589999999999997421                      11111 111  125555555 77


Q ss_pred             Eec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311          814 LSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  891 (1102)
Q Consensus       814 ~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  891 (1102)
                      +.+ ++-.+++|+ |..|.+|.........++.+|.+.|.+++... ++. +++|+.|.+++||-.  +++...+++|..
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            775 444578888 99999999999999999999999999999876 666 899999999999975  567778999999


Q ss_pred             cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001311          892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  971 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~  971 (1102)
                      .|+++++-|++ .++||+.|.+|++|.-.+       .++.+.||..   .|+.+++-+++.++-++.||.|+.|++ +|
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999988 889999999999998654       5778888875   899999999999999999999999999 67


Q ss_pred             eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311          972 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus       972 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
                      +++....  +|..-|+++....++..++++++|++++||+..  ++.+.+.    +|.    ..+|  ++.+-+  ..-+
T Consensus       210 e~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lPt----tsiW--sa~~L~--NgDI  273 (745)
T KOG0301|consen  210 EVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LPT----TSIW--SAKVLL--NGDI  273 (745)
T ss_pred             ceeeeee--ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cCc----cceE--EEEEee--CCCE
Confidence            7766654  999999999999999999999999999999987  6666666    442    2266  666665  3468


Q ss_pred             EEEecCCcEEEEeccCC
Q 001311         1052 ALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1052 ~s~~~Dg~v~vW~~~~~ 1068 (1102)
                      ++|++||.|+||-....
T Consensus       274 vvg~SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  274 VVGGSDGRVRVFTVDKD  290 (745)
T ss_pred             EEeccCceEEEEEeccc
Confidence            88999999999998743

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.1e-22  Score=221.36  Aligned_cols=516  Identities=15%  Similarity=0.191  Sum_probs=324.8

Q ss_pred             EEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCe-eEEEEecCCCcEEEEeCCCCeee
Q 001311          412 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQ-LCVITCGDDKTIKVWDATNGAKQ  490 (1102)
Q Consensus       412 ~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~-~~l~s~~~d~~i~vWd~~~~~~~  490 (1102)
                      ..-.||+|+++++.... ..|.||...+|++++   .+.+|..++..+.+.|.... .++++++.||.|++||...+..+
T Consensus        20 ~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll   95 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLCTG-NFVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL   95 (792)
T ss_pred             cccccccCCcEEEEeeC-CEEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence            34578999999987764 569999999999887   58899999999999887663 47889999999999999999999


Q ss_pred             EEeecCCCCeEEEeeeec-CCccEEE-EEeCCCeEE-EEEcCCCCCeeeecCCCCeeeEEEE-ccCCceeeeccccCcee
Q 001311          491 YIFEGHEAPVYSVCPHHK-ENIQFIF-STALDGKIK-AWLYDNLGSRVDYEAPGRWCTTMAY-SADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       491 ~~~~~h~~~v~~v~~~~~-~~~~~l~-s~s~dg~i~-~wd~~~~~~~~~~~~~~~~v~~~~~-s~~~~~~~~~~~~~~i~  566 (1102)
                      +++..+.. +.++.+.+. .+...++ .+..|..+. ....+..+..       ....-..+ +..+ .+..++..  -.
T Consensus        96 kt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~-------~~~~~~t~~~~~~-d~~~~~~~--~~  164 (792)
T KOG1963|consen   96 KTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQS-------SRFVLATFDSAKG-DFLKEHQE--PK  164 (792)
T ss_pred             EEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccce-------eeeEeeeccccch-hhhhhhcC--Cc
Confidence            99875433 333332110 0001111 111111110 0000000000       00000000 0000 01111111  23


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc---CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311          567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  643 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  643 (1102)
                      ++.+++.+++.+.. .+..+.+|+..++. .....   ...|...+++.+++|.+++++++..||.|.+|.--..     
T Consensus       165 ~I~~~~~ge~~~i~-~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-----  237 (792)
T KOG1963|consen  165 SIVDNNSGEFKGIV-HMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-----  237 (792)
T ss_pred             cEEEcCCceEEEEE-EeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-----
Confidence            45566666544444 45578899887755 11111   1123334789999999999999999999999963220     


Q ss_pred             ecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCC
Q 001311          644 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  723 (1102)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~  723 (1102)
                        .                                                              ..+-+.++|      
T Consensus       238 --~--------------------------------------------------------------~~~~t~t~l------  247 (792)
T KOG1963|consen  238 --S--------------------------------------------------------------DDSETCTLL------  247 (792)
T ss_pred             --c--------------------------------------------------------------cccccceEE------
Confidence              0                                                              000111111      


Q ss_pred             CCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCC
Q 001311          724 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  803 (1102)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  803 (1102)
                                  .=|...|.++.|+++|.+|++||..+.+.+|.+.+                      +.  ...++. 
T Consensus       248 ------------HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T----------------------~~--kqfLPR-  290 (792)
T KOG1963|consen  248 ------------HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLET----------------------GK--KQFLPR-  290 (792)
T ss_pred             ------------EecccccceeEEecCCceEeecccceEEEEEeecC----------------------CC--cccccc-
Confidence                        11778999999999999999999999999998743                      22  111222 


Q ss_pred             CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC-----------CCCeeEEEEecCCCcEEEEEeCCCc
Q 001311          804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-----------PPAATFLAFHPQDNNIIAIGMDDSS  871 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~-----------~~~i~~l~~sp~d~~~lasg~~dg~  871 (1102)
                       -.++|..+.+|||+.+.+... |+.|.+..+.+.....++.+.           .+-.+.++++| .-+.++..+..|.
T Consensus       291 -Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~  368 (792)
T KOG1963|consen  291 -LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGH  368 (792)
T ss_pred             -cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCce
Confidence             578899999999999888877 999999988776655554432           23367788999 7778888999999


Q ss_pred             EEEEEeecceeeeeecc-----------ccccceeEEEecCCCEEEEEcC--------CC--cEEEEEcCCCcccceeee
Q 001311          872 IQIYNVRVDEVKSKLKG-----------HSKRITGLAFSHALNVLVSSGA--------DS--QLCVWSSDGWEKQKNRFL  930 (1102)
Q Consensus       872 v~vwd~~~~~~~~~l~~-----------h~~~V~~l~~s~d~~~l~s~s~--------Dg--~i~vwd~~~~~~~~~~~~  930 (1102)
                      |.+||+.+.+.+..+..           +.-.+++++.+-.|.+++|+-.        ||  .+++|-............
T Consensus       369 vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T  448 (792)
T KOG1963|consen  369 VQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNT  448 (792)
T ss_pred             EEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEE
Confidence            99999998776655521           3345788888888999998742        33  478998776544332222


Q ss_pred             ecCCCCCCCCCCCcEEEE-ccCCc-EEEE-EeCCeEEEEEcCCceEee--------eeccCCCCCCeeEEEEcCCCcEEE
Q 001311          931 QIPTGRTPTAQSDTRVQF-HQDQI-HFLV-VHETQLAIFETTKLECVK--------QWVPRESSAPITHATFSCDSQLVY  999 (1102)
Q Consensus       931 ~~~~~~~~~~~~v~~~~~-spdg~-~l~~-~~d~~i~iwd~~~~~~~~--------~~~~~~h~~~v~~l~~spd~~~l~  999 (1102)
                      .+..-|.   ......+| ++... ..++ +.||.++||-....+-+.        .....-|..++++++||.||..|+
T Consensus       449 ~I~~PH~---~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla  525 (792)
T KOG1963|consen  449 KINNPHG---NAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLA  525 (792)
T ss_pred             EEecCCC---ceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEE
Confidence            2222222   23333333 33333 5555 599999999884432211        111123688999999999997666


Q ss_pred             EEeCCCeEEEEEcCC-ceeEEEeCCCcccCCCCCCCcccceEEEecCC-CCCEEEEEecCCcEEEEeccCCCccc
Q 001311         1000 ACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLESEGKW 1072 (1102)
Q Consensus      1000 s~s~Dg~I~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~-d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1072 (1102)
                       ++.|++|.+||..+ .++.+......+.. +         .+.|..+ .....+.....+.+.+|++.+..-.|
T Consensus       526 -~s~~~~Itiwd~~~~~~l~~~~~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  526 -VSFDDTITIWDYDTKNELLCTEGSRNWPI-A---------ELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             -EecCCEEEEecCCChhhhhccccccccch-H---------hHhhhcccccccceeeccCceEehHhhhhhheec
Confidence             45799999999999 55555444222111 1         1222211 01233444568899999998888666

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=7.8e-23  Score=199.67  Aligned_cols=248  Identities=16%  Similarity=0.272  Sum_probs=192.2

Q ss_pred             eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeE
Q 001311          444 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI  523 (1102)
Q Consensus       444 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i  523 (1102)
                      .+.+.+..|.++|++++.+  +.  ++++||.|-+|+|||+.+.+.+..+..|.+.|+++.|.+......|++|+.||.|
T Consensus        34 ~~lF~~~aH~~sitavAVs--~~--~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i  109 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAVS--GP--YVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI  109 (362)
T ss_pred             eccccccccccceeEEEec--ce--eEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence            3456688999999999984  66  8999999999999999999999999999999999999765544589999999999


Q ss_pred             EEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC
Q 001311          524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  603 (1102)
Q Consensus       524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  603 (1102)
                      .+|+...-.....+..|.+.|+.+++.|.|                     +.-++.+.|+.+++||+-.|+.-..+...
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~---------------------KLALsVg~D~~lr~WNLV~Gr~a~v~~L~  168 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSG---------------------KLALSVGGDQVLRTWNLVRGRVAFVLNLK  168 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecCCC---------------------ceEEEEcCCceeeeehhhcCccceeeccC
Confidence            999998877777777776666665555555                     56788999999999999999876666543


Q ss_pred             CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311          604 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  683 (1102)
Q Consensus       604 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1102)
                      ..   ...+.|+|.|.+++.+..+ .|-+|.+.+. ..+..+.                                     
T Consensus       169 ~~---at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A-~v~~~i~-------------------------------------  206 (362)
T KOG0294|consen  169 NK---ATLVSWSPQGDHFVVSGRN-KIDIYQLDNA-SVFREIE-------------------------------------  206 (362)
T ss_pred             Cc---ceeeEEcCCCCEEEEEecc-EEEEEecccH-hHhhhhh-------------------------------------
Confidence            32   3449999999988888764 6777765443 1111110                                     


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311          684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  763 (1102)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i  763 (1102)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (362)
T KOG0294|consen  207 --------------------------------------------------------------------------------  206 (362)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee
Q 001311          764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT  842 (1102)
Q Consensus       764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~  842 (1102)
                                                               ....+.|+.|. ++..+++|. |+.|.+||..+..+...
T Consensus       207 -----------------------------------------~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~  244 (362)
T KOG0294|consen  207 -----------------------------------------NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTE  244 (362)
T ss_pred             -----------------------------------------ccccceeeeec-CCceEEEecCCceEEEeccCCCcccee
Confidence                                                     11122333333 344566666 78899999998888999


Q ss_pred             ecCCCCCeeEEEEe-cCCCcEEEEEeCCCcEEEEEeecc
Q 001311          843 FMPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       843 ~~~~~~~i~~l~~s-p~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                      +.+|...|..+.+- ..++.+|++++.||.|+|||+...
T Consensus       245 ~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  245 FLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            99999999999843 226789999999999999999865

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=3.8e-24  Score=201.08  Aligned_cols=257  Identities=18%  Similarity=0.232  Sum_probs=206.3

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CCC
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGS  421 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~  421 (1102)
                      .|.+.|..+...--|++ |||++.|++|+|+.+..+....                ....+.||.++|+.++|..  -|.
T Consensus         9 ~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G~   71 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFGT   71 (299)
T ss_pred             hhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccCc
Confidence            48899999999999996 9999999999999998765311                1115899999999999987  899


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-e--eeEEeecCCC
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-A--KQYIFEGHEA  498 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~--~~~~~~~h~~  498 (1102)
                      +||+++.||.|.||.-++|+ ..+..+...|...|++|+|.|.+-.+.|++++.||.|.|.+.++. .  ..+....|.-
T Consensus        72 iLAScsYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~  150 (299)
T KOG1332|consen   72 ILASCSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI  150 (299)
T ss_pred             EeeEeecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc
Confidence            99999999999999999984 555567889999999999999988889999999999999998764 2  2244577999


Q ss_pred             CeEEEeeeecCC-c-----------cEEEEEeCCCeEEEEEcCCCC--CeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311          499 PVYSVCPHHKEN-I-----------QFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  564 (1102)
Q Consensus       499 ~v~~v~~~~~~~-~-----------~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  564 (1102)
                      .|++++|.+..- |           ..|++|+.|..|++|+.+...  ....+..|...|+.+++.|.-..         
T Consensus       151 GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl---------  221 (299)
T KOG1332|consen  151 GVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGL---------  221 (299)
T ss_pred             ccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCC---------
Confidence            999999976521 1           469999999999999998753  22357889999999999886421         


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311          565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                              -..++++++.||+|.||..+....  ..++ .+.....+..+.||..|+.|++++.|+.|.+|.-.
T Consensus       222 --------~~s~iAS~SqDg~viIwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  222 --------PKSTIASCSQDGTVIIWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             --------CceeeEEecCCCcEEEEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence                    013699999999999998763211  1111 12223458899999999999999999999999754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=8.4e-24  Score=217.74  Aligned_cols=282  Identities=12%  Similarity=0.163  Sum_probs=225.6

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      |..-|..++++...+++.+++. |.|+|||+....-                    +.....+......+.|+++.+.||
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~--------------------k~PvsqLdcl~rdnyiRSckL~pd  476 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN--------------------KSPVSQLDCLNRDNYIRSCKLLPD  476 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC--------------------CCccccccccCcccceeeeEecCC
Confidence            7888889999999988887765 5899999854310                    000011222335778999999999


Q ss_pred             CCeEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccce
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT  894 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~  894 (1102)
                      |+.|++|+ -.++.|||+......  ..+......+.+++.+| |.++.++++.||.|.|||+.+...++.|+||.+.+.
T Consensus       477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas  555 (705)
T KOG0639|consen  477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS  555 (705)
T ss_pred             CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence            99999999 688999999865543  33333335688899999 999999999999999999999999999999999999


Q ss_pred             eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE
Q 001311          895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  973 (1102)
Q Consensus       895 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~  973 (1102)
                      ||..++||..|-||+-|.+||.||+..+......     +    ....|.++-.+|++.+++++ .++.+.|......+.
T Consensus       556 cIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----d----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  556 CIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----D----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             eEEecCCCceeecCCCccceeehhhhhhhhhhhh-----h----hhhhheecccCCCccceeeecccCcEEEEecCCccc
Confidence            9999999999999999999999999986542211     1    11468899999999999998 677888888765544


Q ss_pred             eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311          974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus       974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
                      .   ..+-|.+.|.++.|++.|+++++.+.|..+-.|...-|..+.+.+         ....|.  +|..+- |.+++||
T Consensus       627 y---qlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVl--sCDIS~-ddkyIVT  691 (705)
T KOG0639|consen  627 Y---QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVL--SCDISF-DDKYIVT  691 (705)
T ss_pred             e---eecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcce--eeeecc-CceEEEe
Confidence            2   234689999999999999999999999999999999999887665         122244  677776 5689999


Q ss_pred             EecCCcEEEEec
Q 001311         1054 GLSDGGVHVFEP 1065 (1102)
Q Consensus      1054 ~~~Dg~v~vW~~ 1065 (1102)
                      |+.|....||.+
T Consensus       692 GSGdkkATVYeV  703 (705)
T KOG0639|consen  692 GSGDKKATVYEV  703 (705)
T ss_pred             cCCCcceEEEEE
Confidence            999998888876

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.4e-20  Score=207.41  Aligned_cols=255  Identities=16%  Similarity=0.226  Sum_probs=207.7

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      ...|+..-+.|+|.|+|.+ +.+++.||.|++|+.........                  ++.-+...|.+++.  ++.
T Consensus         9 Ryaht~G~t~i~~d~~gef-i~tcgsdg~ir~~~~~sd~e~P~------------------ti~~~g~~v~~ia~--~s~   67 (933)
T KOG1274|consen    9 RYAHTGGLTLICYDPDGEF-ICTCGSDGDIRKWKTNSDEEEPE------------------TIDISGELVSSIAC--YSN   67 (933)
T ss_pred             hhhccCceEEEEEcCCCCE-EEEecCCCceEEeecCCcccCCc------------------hhhccCceeEEEee--ccc
Confidence            3468999999999999996 88899999999999876521110                  22236777777776  455


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  501 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~  501 (1102)
                      +|++|+.+++|.+|...+++.-..   +....-++.+++|+.+|+  +++.||.|-.|++-++.+......+++|.++|.
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~i---L~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDTI---LARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccce---eeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence            999999999999999998765332   333457899999999999  899999999999999999999999999999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      ++.|  ++++.+|++.+.||.|++||+.++.....+..-...-.             ......+..++|+|++..++..+
T Consensus       143 ~l~~--~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-------------~~~s~i~~~~aW~Pk~g~la~~~  207 (933)
T KOG1274|consen  143 QLSY--DPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-------------FILSRICTRLAWHPKGGTLAVPP  207 (933)
T ss_pred             eeeE--cCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-------------ccccceeeeeeecCCCCeEEeec
Confidence            9987  56668999999999999999998776665543211000             00022455678888888899999


Q ss_pred             CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                      .|+.|.+|+..+......+........+..+.|+|.|+|||+++.+|.|.|||+.+
T Consensus       208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            99999999999999998887666555688999999999999999999999999986

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=1.6e-22  Score=197.56  Aligned_cols=242  Identities=19%  Similarity=0.209  Sum_probs=187.7

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      ..+.|+.|.|+|.+.. |++++.||++++||+...+..                    ..-.|..++.+++|.+ ...++
T Consensus        12 P~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~--------------------~~~~~~~plL~c~F~d-~~~~~   69 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLK--------------------LKFKHGAPLLDCAFAD-ESTIV   69 (323)
T ss_pred             ChhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhh--------------------hheecCCceeeeeccC-CceEE
Confidence            5689999999999997 666679999999999876433                    2456889999999987 56788


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  504 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~  504 (1102)
                      +|+.||.|+++|+.++....    +..|..+|.||.+++...  .+++||.|++|++||.+.......+. ....|.++.
T Consensus        70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~  142 (323)
T KOG1036|consen   70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD  142 (323)
T ss_pred             EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence            99999999999999987654    778999999999998777  69999999999999998866666665 344788776


Q ss_pred             eeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC
Q 001311          505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  584 (1102)
Q Consensus       505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  584 (1102)
                      .    .++.|+.|+.|..|.+||+++...........-                   +-.+.++++-|++.-+++++-||
T Consensus       143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------------kyqtR~v~~~pn~eGy~~sSieG  199 (323)
T KOG1036|consen  143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------------KYQTRCVALVPNGEGYVVSSIEG  199 (323)
T ss_pred             c----cCCEEEEeecCceEEEEEcccccchhhhccccc-------------------eeEEEEEEEecCCCceEEEeecc
Confidence            3    346899999999999999998765542221110                   11344455555555688899999


Q ss_pred             eEEEEECCCc----ceEEEEcCCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          585 SIKFWDMDSV----QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       585 ~i~iwd~~~~----~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      .|.+=.++..    +....++.|..       .-+|++++|+|--..+++|+.||.|.+||..+.
T Consensus       200 RVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r  264 (323)
T KOG1036|consen  200 RVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR  264 (323)
T ss_pred             eEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence            9888666554    23334443321       236889999999999999999999999998776

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.4e-23  Score=197.29  Aligned_cols=222  Identities=19%  Similarity=0.270  Sum_probs=179.2

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC--CCCeeEEEEecCCCcEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIK  480 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~  480 (1102)
                      +-..|.+.|..+...--|++||||+.|++|+|+.+..+.....+.+|.||.++|+.++|..  .|.  +|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence            4678999999999888999999999999999999998877677788999999999999987  677  899999999999


Q ss_pred             EEeCCCCee--eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC---CeeeecCCCCeeeEEEEccC---
Q 001311          481 VWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSAD---  552 (1102)
Q Consensus       481 vWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~---  552 (1102)
                      ||.-..|+-  ...+..|...|++++|.+..-|-.|++++.||.|.+.+.+...   .......|.-.|+++++.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            999777743  4566789999999999999989999999999999999988762   22344567778899999886   


Q ss_pred             CceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC----CEEEEEECCC
Q 001311          553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAVSTNDN  628 (1102)
Q Consensus       553 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg  628 (1102)
                      |...-.+...          .-..|++|+.|+.|+||+..++.-+..-...+|...|+.++|.|.-    .+|++++.||
T Consensus       164 g~~~~~~~~~----------~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg  233 (299)
T KOG1332|consen  164 GSLVDQGPAA----------KVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDG  233 (299)
T ss_pred             ccccccCccc----------ccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCC
Confidence            3211111000          0146999999999999999887533222233456689999999953    5899999999


Q ss_pred             cEEEEEcc
Q 001311          629 GIKILATS  636 (1102)
Q Consensus       629 ~i~iwd~~  636 (1102)
                      ++.||...
T Consensus       234 ~viIwt~~  241 (299)
T KOG1332|consen  234 TVIIWTKD  241 (299)
T ss_pred             cEEEEEec
Confidence            99999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.91  E-value=2.2e-22  Score=194.04  Aligned_cols=240  Identities=15%  Similarity=0.239  Sum_probs=178.4

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  420 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg  420 (1102)
                      ...|.+.|+++.+.+..-.++++|+.||.|.|||++....-....+-  -...|.  ....-..+|.-.|..+-|-| |.
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li--~k~~c~--v~~~h~~~Hky~iss~~WyP~Dt  114 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI--AKHKCI--VAKQHENGHKYAISSAIWYPIDT  114 (397)
T ss_pred             eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce--eheeee--ccccCCccceeeeeeeEEeeecC
Confidence            34599999999999864445999999999999999764411100000  000000  11123568999999999999 88


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCC-eeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNK-QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~-~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      .++.+++.|.+++|||..+-+...   .++ -.+.|.+-+|||-.. +-++++|..|-.|++-|+.+|.+.+++.||.+.
T Consensus       115 GmFtssSFDhtlKVWDtnTlQ~a~---~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  115 GMFTSSSFDHTLKVWDTNTLQEAV---DFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             ceeecccccceEEEeecccceeeE---Eee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc
Confidence            899999999999999999876543   222 457788888988644 436788888899999999999999999999999


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      |.++.|++..+ -.|++|+.||.|++||++...                                               
T Consensus       191 vlaV~Wsp~~e-~vLatgsaDg~irlWDiRras-----------------------------------------------  222 (397)
T KOG4283|consen  191 VLAVEWSPSSE-WVLATGSADGAIRLWDIRRAS-----------------------------------------------  222 (397)
T ss_pred             eEEEEeccCce-eEEEecCCCceEEEEEeeccc-----------------------------------------------
Confidence            99999987665 678999999999999997521                                               


Q ss_pred             EeCCCeEEEEECCCcceEEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311          580 AGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  641 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  641 (1102)
                          |..++.|...++....++ ...+.+.+++++|+.++.++++.+.|..+++|+..+|...
T Consensus       223 ----gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt  281 (397)
T KOG4283|consen  223 ----GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT  281 (397)
T ss_pred             ----ceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence                223333333322222222 2233457999999999999999999999999999888433

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8.7e-21  Score=210.91  Aligned_cols=510  Identities=13%  Similarity=0.160  Sum_probs=316.6

Q ss_pred             eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC---CeEEEE
Q 001311          350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG---SLFGVA  426 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg---~~las~  426 (1102)
                      ..-.||+|+++++....  .+|.||...|++++.                   .+.+|..++..+.+.|..   .++.++
T Consensus        20 ~~avfSnD~k~l~~~~~--~~V~VyS~~Tg~~i~-------------------~l~~~~a~l~s~~~~~~~~~~~~~~~~   78 (792)
T KOG1963|consen   20 SPAVFSNDAKFLFLCTG--NFVKVYSTATGECIT-------------------SLEDHTAPLTSVIVLPSSENANYLIVC   78 (792)
T ss_pred             cccccccCCcEEEEeeC--CEEEEEecchHhhhh-------------------hcccccCccceeeecCCCccceEEEEE
Confidence            34579999998666544  899999999999887                   589999999999999854   467799


Q ss_pred             ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEc----CCCCeeEEEEecCCCc-EEEEeCCCCeeeE----------
Q 001311          427 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS----HPNKQLCVITCGDDKT-IKVWDATNGAKQY----------  491 (1102)
Q Consensus       427 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s----~d~~~~~l~s~~~d~~-i~vWd~~~~~~~~----------  491 (1102)
                      +.||.|++||...+..++.   +.. ..+|..+.+.    ....  .+..+..|.. +.-...+..+...          
T Consensus        79 sl~G~I~vwd~~~~~Llkt---~~~-~~~v~~~~~~~~~a~~s~--~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~  152 (792)
T KOG1963|consen   79 SLDGTIRVWDWSDGELLKT---FDN-NLPVHALVYKPAQADISA--NVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSA  152 (792)
T ss_pred             ecCccEEEecCCCcEEEEE---Eec-CCceeEEEechhHhCccc--eeEeecccceeeeecccccccceeeeEeeecccc
Confidence            9999999999999987653   221 2233333332    1111  1111222211 1111111111111          


Q ss_pred             ---EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEE
Q 001311          492 ---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  568 (1102)
Q Consensus       492 ---~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  568 (1102)
                         .+.+|.. -.++..  .+.|. +.....+..+.+|...... .. ...               +-..-++.-.+++.
T Consensus       153 ~~d~~~~~~~-~~~I~~--~~~ge-~~~i~~~~~~~~~~v~~~~-~~-~~~---------------~~~~~~Htf~~t~~  211 (792)
T KOG1963|consen  153 KGDFLKEHQE-PKSIVD--NNSGE-FKGIVHMCKIHIYFVPKHT-KH-TSS---------------RDITVHHTFNITCV  211 (792)
T ss_pred             chhhhhhhcC-CccEEE--cCCce-EEEEEEeeeEEEEEecccc-ee-ecc---------------chhhhhhcccceeE
Confidence               1122322 122333  23333 3333345667788776543 11 100               11111222347888


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCC--cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311          569 QFDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       569 ~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                      +++|.+++++++..||.|.+|.--.  +.....-..|-|...|.+++|+++|.+|++|+..|.+.+|.+.++++.+  +.
T Consensus       212 ~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--LP  289 (792)
T KOG1963|consen  212 ALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--LP  289 (792)
T ss_pred             EeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--cc
Confidence            9999999999999999999996433  2222222234555689999999999999999999999999998873211  10


Q ss_pred             cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCC
Q 001311          647 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPN  726 (1102)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~  726 (1102)
                                                                                                      
T Consensus       290 --------------------------------------------------------------------------------  289 (792)
T KOG1963|consen  290 --------------------------------------------------------------------------------  289 (792)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC
Q 001311          727 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE  806 (1102)
Q Consensus       727 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  806 (1102)
                                .-...|..+.++||+...+....|..|.+-....-...      ....  -..+.+...      .....
T Consensus       290 ----------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k------~tIs--gi~~~~~~~------k~~~~  345 (792)
T KOG1963|consen  290 ----------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK------STIS--GIKPPTPST------KTRPQ  345 (792)
T ss_pred             ----------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh------hhcc--CccCCCccc------ccccc
Confidence                      03367899999999999999999999988765321110      0000  000000000      00134


Q ss_pred             CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec-----CCC------CCeeEEEEecCCCcEEEEEe-------
Q 001311          807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM-----PPP------PAATFLAFHPQDNNIIAIGM-------  867 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~-----~~~------~~i~~l~~sp~d~~~lasg~-------  867 (1102)
                      +-.+.++++|--+.++-.. .|.|.+||+.+-+.+..+.     .+.      -.+++++.+. .|.+++|+-       
T Consensus       346 ~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~-~gs~maT~E~~~d~~~  424 (792)
T KOG1963|consen  346 SLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR-FGSWMATLEARIDKFN  424 (792)
T ss_pred             ccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc-cceEEEEeeeeehhhh
Confidence            4467788888544555444 8999999998877665542     122      2478888888 699999874       


Q ss_pred             -CCC--cEEEEEeecce----eeee-eccccccceeEEEecC--CCEEEEEcCCCcEEEEEcCCCccc-----ceeeeec
Q 001311          868 -DDS--SIQIYNVRVDE----VKSK-LKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQ-----KNRFLQI  932 (1102)
Q Consensus       868 -~dg--~v~vwd~~~~~----~~~~-l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~-----~~~~~~~  932 (1102)
                       .||  .+++|-.....    +... -..|...+...+|.+.  ...+++++.||.++||-+...+..     .+.+..+
T Consensus       425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i  504 (792)
T KOG1963|consen  425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI  504 (792)
T ss_pred             ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence             233  67788765432    2222 2458877777777543  237999999999999998432211     1223222


Q ss_pred             CCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc-eEeeeeccCCCCCCeeEEEEcC----CCcEEEEEeCCCeE
Q 001311          933 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSC----DSQLVYACFLDATV 1007 (1102)
Q Consensus       933 ~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~sp----d~~~l~s~s~Dg~I 1007 (1102)
                      ..-|.   .++..++|+.||..|+++.++.|.+||..+. .......  .-..++..++|..    ++  .+........
T Consensus       505 ~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l  577 (792)
T KOG1963|consen  505 GSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEG--SRNWPIAELLFTAQTQNDG--ALVHATQQRL  577 (792)
T ss_pred             ecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccc--ccccchHhHhhhccccccc--ceeeccCceE
Confidence            22222   4789999999999999999999999999883 3322221  1123344444332    33  2334457889


Q ss_pred             EEEEcCCceeEEEe
Q 001311         1008 CVFSAANLKLRCRI 1021 (1102)
Q Consensus      1008 ~vwd~~~~~~~~~~ 1021 (1102)
                      .+|++-++.+...+
T Consensus       578 ~~WNll~~~l~w~~  591 (792)
T KOG1963|consen  578 SVWNLLSMSLIWNL  591 (792)
T ss_pred             ehHhhhhhheecch
Confidence            99999888877633

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=9.2e-23  Score=209.82  Aligned_cols=212  Identities=16%  Similarity=0.171  Sum_probs=176.6

Q ss_pred             CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC--
Q 001311          408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT--  485 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~--  485 (1102)
                      .+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+.   .+.+|-..|+|+.|+.||.  +|+|||.||.|.+|++.  
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l  155 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL  155 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence            4689999999999999999999999999999998776   4789999999999999999  89999999999999874  


Q ss_pred             -------CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311          486 -------NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       486 -------~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                             +-++++.|..|+-+|+++...+.+-..+++|+|.|.++++||+..+..+..+..+                  
T Consensus       156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp------------------  217 (476)
T KOG0646|consen  156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP------------------  217 (476)
T ss_pred             cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC------------------
Confidence                   3467889999999999998766655679999999999999999987665544332                  


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc----------------ceEEEEcCCCCCCCcCeEEEcCCCCEEE
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV----------------QLLTSIDADGGLPASPRIRFNKDGCLLA  622 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~  622 (1102)
                          ..+.+++++|.+..+++|+++|.|.+.++...                ..+..+.+|.....|+|++++-||.+|+
T Consensus       218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence                25666777777778888888888888776432                2344555565555899999999999999


Q ss_pred             EEECCCcEEEEEccCCccceeeccc
Q 001311          623 VSTNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       623 ~~~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                      +|+.||.+.+||+.+. ++++.+..
T Consensus       294 SGd~dg~VcvWdi~S~-Q~iRtl~~  317 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSK-QCIRTLQT  317 (476)
T ss_pred             eeCCCCCEEEEecchH-HHHHHHhh
Confidence            9999999999999887 67776654

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.1e-22  Score=222.22  Aligned_cols=251  Identities=16%  Similarity=0.192  Sum_probs=203.7

Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                      .|....+.++|.|+|..+++++.||.|++|+.......|                  ..+.      .+...|.+++.  
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P------------------~ti~------~~g~~v~~ia~--   64 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP------------------ETID------ISGELVSSIAC--   64 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCC------------------chhh------ccCceeEEEee--
Confidence            478889999999999999999999999999864321100                  0000      14555666665  


Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  895 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  895 (1102)
                      ++.+|++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|++|-.|++-++.+......+.+|.++|.+
T Consensus        65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~  143 (933)
T KOG1274|consen   65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ  143 (933)
T ss_pred             cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence            444888888 89999999988776555555667899999999 9999999999999999999999889999999999999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC-cEEEEEeCCeEEEEEcCCceEe
Q 001311          896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ-IHFLVVHETQLAIFETTKLECV  974 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~d~~i~iwd~~~~~~~  974 (1102)
                      |.|+|.+.+||+.+.||.|+|||++.+....................+..++|+|+| ++++.+.|+.|.+|+..+.+..
T Consensus       144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~  223 (933)
T KOG1274|consen  144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ  223 (933)
T ss_pred             eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence            999999999999999999999999987654322211111111112456789999995 4555589999999999999998


Q ss_pred             eeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311          975 KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       975 ~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      ..+....|...+.++.|||+|+|||+++.||.|.|||+++
T Consensus       224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence            8888777777799999999999999999999999999997

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=4.6e-21  Score=211.38  Aligned_cols=205  Identities=17%  Similarity=0.201  Sum_probs=149.4

Q ss_pred             EEEEecCCCeEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeeeec
Q 001311          811 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       811 ~l~~s~d~~~las~-s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~  887 (1102)
                      .++++|+++.++++ . ++.|++||+.+.+.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.
T Consensus        77 ~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~  154 (300)
T TIGR03866        77 LFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVL  154 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence            45666777765544 3 67888888888777666653 23468899999 899999888775 57788998877665543


Q ss_pred             cccccceeEEEecCCCEEEE-EcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--EeCCeEE
Q 001311          888 GHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLA  964 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~d~~i~  964 (1102)
                      . ...+.+++|++|+++|+. +..++.|++||+++++............+ ........++|+|+|+++++  +.++.+.
T Consensus       155 ~-~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~s~dg~~~~~~~~~~~~i~  232 (300)
T TIGR03866       155 V-DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVH-PEAVQPVGIKLTKDGKTAFVALGPANRVA  232 (300)
T ss_pred             c-CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccc-cccCCccceEECCCCCEEEEEcCCCCeEE
Confidence            2 234678999999998854 45699999999998754322111111100 01113357899999998665  3567899


Q ss_pred             EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311          965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +||..+++.+..+.   +...+.+++|+|+|++|++++ .++.|+|||+.+++.+.++.
T Consensus       233 v~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       233 VVDAKTYEVLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCcEEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            99999988876553   245799999999999998764 68999999999999998887

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=8.1e-23  Score=217.39  Aligned_cols=434  Identities=15%  Similarity=0.149  Sum_probs=274.9

Q ss_pred             EEEcc---CCCeEEEEECCCeEEEEEccCCcee---eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001311          414 VIWSP---DGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  487 (1102)
Q Consensus       414 l~~sp---dg~~las~~~d~~v~vwd~~~~~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~  487 (1102)
                      ..|++   ...+||.+.+||.|.++|.+....-   +++.....|.+.|..+.|.| |+. .|++++.|.++++||++++
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeeccc
Confidence            56665   4567899999999999998754311   22345668999999999999 444 8999999999999999999


Q ss_pred             eeeEE--eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311          488 AKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  565 (1102)
Q Consensus       488 ~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  565 (1102)
                      +++..  +.||.+.|.++||.+.. ...|++|+.||.|.+||++....... ...            ..+++.+|...+ 
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n-~~vF~tGgRDg~illWD~R~n~~d~~-e~~------------~~~~~~~~n~~p-  197 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTN-PAVFCTGGRDGEILLWDCRCNGVDAL-EEF------------DNRIYGRHNTAP-  197 (720)
T ss_pred             eeecceeecccccccchhhhccCC-CcceeeccCCCcEEEEEEeccchhhH-HHH------------hhhhhccccCCC-
Confidence            99876  89999999999998654 47899999999999999975431110 000            000000010000 


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCe---EEEcCCCCEEEEEEC-CCcEEEEEccCCccc
Q 001311          566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR---IRFNKDGCLLAVSTN-DNGIKILATSDGIRL  641 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~---~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~  641 (1102)
                           .|.  .-    ....++-|-...             ..|.+   +.+..|...||+++. |+.|++||++.....
T Consensus       198 -----tps--kp----~~kr~~k~kA~s-------------~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~  253 (720)
T KOG0321|consen  198 -----TPS--KP----LKKRIRKWKAAS-------------NTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTA  253 (720)
T ss_pred             -----CCC--ch----hhcccccccccc-------------CceeeeeEEEEEeccceeeeccCCCcceEEEeecccccc
Confidence                 000  00    001122222211             12333   556678888998887 999999999877333


Q ss_pred             eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311          642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  721 (1102)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~  721 (1102)
                      .+.-......                                                                   +. 
T Consensus       254 ~r~ep~~~~~-------------------------------------------------------------------~~-  265 (720)
T KOG0321|consen  254 YRQEPRGSDK-------------------------------------------------------------------YP-  265 (720)
T ss_pred             cccCCCcccC-------------------------------------------------------------------cc-
Confidence            2211100000                                                                   00 


Q ss_pred             CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311          722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  801 (1102)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  801 (1102)
                                 .. ......+.++.....|.+|++.+.|+.|+.|++......+.+..            .|.+      
T Consensus       266 -----------t~-skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~------------sg~~------  315 (720)
T KOG0321|consen  266 -----------TH-SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF------------SGKL------  315 (720)
T ss_pred             -----------Cc-ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc------------cCcc------
Confidence                       00 00234577888888899999999999999999865443332211            1111      


Q ss_pred             CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                         ....-..-..+||+.++++|+ |...++|.+.+.+. ...+.+|.-.|++++|.|..-.-+|++++|..++||++..
T Consensus       316 ---~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  316 ---NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             ---cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence               111112235689999999999 99999999987665 4557899999999999996667788889999999999965


Q ss_pred             ce--------------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcE
Q 001311          880 DE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTR  945 (1102)
Q Consensus       880 ~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  945 (1102)
                      +-              ....+++|.-.+..+.++-.+.+....  .+..++|...                       ..
T Consensus       393 ~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~t~~~pR--~~~~r~~ssP-----------------------~s  447 (720)
T KOG0321|consen  393 GLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRKTYKDPR--EGMNRISSSP-----------------------VS  447 (720)
T ss_pred             chhhccccccchhhhhhhhhhhccccccccccccccccccchh--hhccccccCc-----------------------cc
Confidence            42              223445565555555554433332222  3345555432                       23


Q ss_pred             EEEccCCcEEEEE-----eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeC-----------CCeEEE
Q 001311          946 VQFHQDQIHFLVV-----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-----------DATVCV 1009 (1102)
Q Consensus       946 ~~~spdg~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~-----------Dg~I~v 1009 (1102)
                      ++..|++.-...+     ..-.|...+....+........+|-..|....+++.+..+++.+-           ++.+.+
T Consensus       448 ~a~~~s~~s~~~~~~~t~qt~~i~~~p~kr~~~~ss~~s~~~~~Svs~~d~ss~~s~~~s~SP~~~~~stpp~sets~~s  527 (720)
T KOG0321|consen  448 LACSPSGASDDCGYGVTDQTSGIVVFPTKRNKPSSSRGSGGHLSSVSAEDWSSEKSQLASRSPQKNRGSTPPISETSVNS  527 (720)
T ss_pred             hhcCcCCcccccCCCcccccccceecchhccCccccccccccccccccCCCccccccccccCcccccCCCCCcCcccccc
Confidence            3334443333331     112344455444444433333456777777788887777888887           888888


Q ss_pred             EEcCC
Q 001311         1010 FSAAN 1014 (1102)
Q Consensus      1010 wd~~~ 1014 (1102)
                      |....
T Consensus       528 ~~s~l  532 (720)
T KOG0321|consen  528 PNSSL  532 (720)
T ss_pred             ccccc
Confidence            87543

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=7.9e-22  Score=192.17  Aligned_cols=295  Identities=17%  Similarity=0.221  Sum_probs=218.2

Q ss_pred             eEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee
Q 001311          411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  490 (1102)
Q Consensus       411 V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~  490 (1102)
                      -.|+.||+.|.+||+|+.||.|.|||+.|...-+   .+.+|..+|++++||+||+  .|+|++.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7899999999999999999999999999865333   5889999999999999999  7999999999999999999999


Q ss_pred             EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEE
Q 001311          491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  570 (1102)
Q Consensus       491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  570 (1102)
                      +.+. ...+|+.+.|++...+..+++ -.+..-.+-++..+.           -..+...+++..-.      .-.+..|
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~~~-----------h~~Lp~d~d~dln~------sas~~~f  161 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSDPK-----------HSVLPKDDDGDLNS------SASHGVF  161 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEE-EecCCcEEEEecCCc-----------eeeccCCCcccccc------ccccccc
Confidence            9987 788999999998766544443 333333333333211           11122223332111      1112358


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccc
Q 001311          571 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  650 (1102)
Q Consensus       571 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  650 (1102)
                      ++.|+++++|...|.+.++|..+.+++..++... ...|..+.++..|++|+..+.|..||.|++..-...     +   
T Consensus       162 dr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~-----~---  232 (405)
T KOG1273|consen  162 DRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE-----G---  232 (405)
T ss_pred             cCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehhhhccc-----C---
Confidence            8889999999999999999999999998887554 346889999999999999999999999986432000     0   


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311          651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  730 (1102)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~  730 (1102)
                                                                                 .++.+.           ..  
T Consensus       233 -----------------------------------------------------------r~~e~e-----------~~--  240 (405)
T KOG1273|consen  233 -----------------------------------------------------------RDGEVE-----------PE--  240 (405)
T ss_pred             -----------------------------------------------------------ccCCcC-----------hh--
Confidence                                                                       000000           00  


Q ss_pred             ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311          731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  810 (1102)
Q Consensus       731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~  810 (1102)
                             |                                               ++-|+             -....-.
T Consensus       241 -------~-----------------------------------------------K~qDv-------------VNk~~Wk  253 (405)
T KOG1273|consen  241 -------H-----------------------------------------------KLQDV-------------VNKLQWK  253 (405)
T ss_pred             -------H-----------------------------------------------HHHHH-------------Hhhhhhh
Confidence                   0                                               00000             0222345


Q ss_pred             EEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          811 CFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       811 ~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      +++|+.+|.|++.++  ...++||....|.+++.+.|.. .....+.|+| -...+++- ..|.|+||....
T Consensus       254 ~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~  323 (405)
T KOG1273|consen  254 KCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ  323 (405)
T ss_pred             heeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence            688999999999887  4779999999999999999887 4577899999 66677766 789999998654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=2.4e-21  Score=206.02  Aligned_cols=457  Identities=12%  Similarity=0.158  Sum_probs=285.8

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  427 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  427 (1102)
                      .|..++|-|||..|++.++  ..+.|||++.|..+.                   .+++|.+.|+|++||.||+++|+|+
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence            8899999999998777655  789999999998887                   5999999999999999999999999


Q ss_pred             CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeee
Q 001311          428 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  507 (1102)
Q Consensus       428 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~  507 (1102)
                      .|..|.||+-+-...++     ..|.+.|.|+.|+|-..  .|+|++-. ..-+|.......+    .|...+.+++.+.
T Consensus        73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW  140 (1081)
T ss_pred             CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence            99999999976544443     25999999999999998  58888754 4668986544332    2333333333334


Q ss_pred             cCCccEEEEEeCCCeEEEEEcCCCCCeeeec---CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC
Q 001311          508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  584 (1102)
Q Consensus       508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  584 (1102)
                      ..||++++.|-.+|+|.+=+-.. +....+.   +...+|.+++|+|...   .|             ....+++.....
T Consensus       141 tnDGqylalG~~nGTIsiRNk~g-Eek~~I~Rpgg~Nspiwsi~~~p~sg---~G-------------~~di~aV~DW~q  203 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKNG-EEKVKIERPGGSNSPIWSICWNPSSG---EG-------------RNDILAVADWGQ  203 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCCC-CcceEEeCCCCCCCCceEEEecCCCC---CC-------------ccceEEEEeccc
Confidence            78889999999999998875443 3222222   3455777777777643   11             113466677778


Q ss_pred             eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcc
Q 001311          585 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  664 (1102)
Q Consensus       585 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1102)
                      ++.+|.+ +|+.+..-..-+-  .-.|+.+-++|.+++.|+.|+.+.+|-. .| -.+-++                   
T Consensus       204 TLSFy~L-sG~~Igk~r~L~F--dP~CisYf~NGEy~LiGGsdk~L~~fTR-~G-vrLGTv-------------------  259 (1081)
T KOG1538|consen  204 TLSFYQL-SGKQIGKDRALNF--DPCCISYFTNGEYILLGGSDKQLSLFTR-DG-VRLGTV-------------------  259 (1081)
T ss_pred             eeEEEEe-cceeecccccCCC--CchhheeccCCcEEEEccCCCceEEEee-cC-eEEeec-------------------
Confidence            8888887 4554443222211  3468999999999999999999999852 22 111000                   


Q ss_pred             cchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEE
Q 001311          665 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  744 (1102)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~  744 (1102)
                                                                                             ......|..
T Consensus       260 -----------------------------------------------------------------------g~~D~WIWt  268 (1081)
T KOG1538|consen  260 -----------------------------------------------------------------------GEQDSWIWT  268 (1081)
T ss_pred             -----------------------------------------------------------------------cccceeEEE
Confidence                                                                                   003357888


Q ss_pred             EEEccCCceEEEeecCceEEeeeccccccC-------CCCc--------------------------------ccc---c
Q 001311          745 LIFTNSGNAILALASNAIHLLWKWQRTERN-------SSGK--------------------------------ATA---S  782 (1102)
Q Consensus       745 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-------~~~~--------------------------------~~~---~  782 (1102)
                      ++..|+++.++.|+.||+|-.|++......       ...+                                .++   .
T Consensus       269 V~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLp  348 (1081)
T KOG1538|consen  269 VQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLP  348 (1081)
T ss_pred             EEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheeccc
Confidence            889999999999999999998887543100       0000                                000   0


Q ss_pred             ccceeccCCCccccccccCCC-CCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEE--ecCC
Q 001311          783 VAPQLWQPPSGIMMTNDVTDS-NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF--HPQD  859 (1102)
Q Consensus       783 ~~~~~w~~~~~~~~~~~~~~~-~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~--sp~d  859 (1102)
                      ..+.+|...++.......... .-.....+--+--.++.++.+.+..+..+|...-.. +... -.+-|.-+..  -|-+
T Consensus       349 eki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~g  426 (1081)
T KOG1538|consen  349 EKILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPG  426 (1081)
T ss_pred             ceEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCC
Confidence            022333333332111000000 000000111111234455555566677777643111 1000 0000111111  1214


Q ss_pred             CcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCC
Q 001311          860 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  939 (1102)
Q Consensus       860 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  939 (1102)
                      ..-|+.|..||.|+-.=+.+.-.+- +......|.|+..+...+.||+..+.++..++|+.+++.    ..+.+      
T Consensus       427 REgL~vGlknGqV~kiF~dN~~PiL-l~~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp------  495 (1081)
T KOG1538|consen  427 REGLLVGLKNGQVLKIFVDNLFPIL-LLKQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP------  495 (1081)
T ss_pred             cceeEEEecCCcEEEEEecCCchhh-eecccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC------
Confidence            5567788888877644444332222 233456799999999999999999999999999999764    22221      


Q ss_pred             CCCCcEEEEccCCcEEEE-EeCCeEE
Q 001311          940 AQSDTRVQFHQDQIHFLV-VHETQLA  964 (1102)
Q Consensus       940 ~~~v~~~~~spdg~~l~~-~~d~~i~  964 (1102)
                        .+.+++|.....-+.+ ...|.+.
T Consensus       496 --g~nSV~wNT~~E~MlcfT~~g~L~  519 (1081)
T KOG1538|consen  496 --GANSVAWNTQCEDMLCFTGGGYLN  519 (1081)
T ss_pred             --CCceEEeeccccceEEEecCCceE
Confidence              5688889875444333 4445443

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=3.4e-21  Score=188.34  Aligned_cols=284  Identities=15%  Similarity=0.181  Sum_probs=209.7

Q ss_pred             CCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeC
Q 001311          405 KDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  484 (1102)
Q Consensus       405 ~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~  484 (1102)
                      ....+.|+.+.|+|.+..|++++.||++++||+...+...    .-.|..++.+++|.++.+   +++|+.||.|+.+|+
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dl   82 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDL   82 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEe
Confidence            3457799999999999999999999999999999875332    335899999999998665   899999999999999


Q ss_pred             CCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311          485 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  564 (1102)
Q Consensus       485 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  564 (1102)
                      .++.....- .|..+|.++...+..  ..+++||-|++|++||.+.......+.... .|.++.                
T Consensus        83 n~~~~~~ig-th~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~----------------  142 (323)
T KOG1036|consen   83 NTGNEDQIG-THDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMD----------------  142 (323)
T ss_pred             cCCcceeec-cCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEe----------------
Confidence            988765544 499999999986433  579999999999999998743333332221 333333                


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311          565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  644 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  644 (1102)
                             -.++.|+.|+.|..|.+||+++...........-.-.++|+++-|++.-.++++-||.|.+=..... ...+.
T Consensus       143 -------v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s-~~~~s  214 (323)
T KOG1036|consen  143 -------VSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS-EEAQS  214 (323)
T ss_pred             -------ccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc-hHHhh
Confidence                   2346799999999999999998765443332222345789999998888999999999876443322 00000


Q ss_pred             cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCC
Q 001311          645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE  724 (1102)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~  724 (1102)
                      .+   .           +|.+..                                                         
T Consensus       215 kk---y-----------aFkCHr---------------------------------------------------------  223 (323)
T KOG1036|consen  215 KK---Y-----------AFKCHR---------------------------------------------------------  223 (323)
T ss_pred             hc---e-----------eEEeee---------------------------------------------------------
Confidence            00   0           000000                                                         


Q ss_pred             CCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCC
Q 001311          725 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  804 (1102)
Q Consensus       725 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  804 (1102)
                                            -..++          .-                                         
T Consensus       224 ----------------------~~~~~----------~~-----------------------------------------  230 (323)
T KOG1036|consen  224 ----------------------LSEKD----------TE-----------------------------------------  230 (323)
T ss_pred             ----------------------cccCC----------ce-----------------------------------------
Confidence                                  00001          00                                         


Q ss_pred             CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  868 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~  868 (1102)
                      .-.+|.+++|+|--..||+|+ ||.|.+||+.+.+.+..+..-...|..++|+. +|..||+|+.
T Consensus       231 ~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s  294 (323)
T KOG1036|consen  231 IIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS  294 (323)
T ss_pred             EEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence            123578899999988999998 99999999999998988888888899999999 9999999873

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1.8e-21  Score=199.56  Aligned_cols=248  Identities=13%  Similarity=0.197  Sum_probs=194.7

Q ss_pred             ccceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          739 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       739 ~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      ..+|.+.+|.|+|. .+++++....++.||+.+.+...-..                     +.+ -....+....++++
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~---------------------~~g-~e~~~~e~FeVShd  314 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKP---------------------PYG-VEEKSMERFEVSHD  314 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccccccC---------------------CCC-cccchhheeEecCC
Confidence            36788999999999 88888888999999985432211100                     001 02345778899999


Q ss_pred             CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc-ccee
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITG  895 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~~  895 (1102)
                      +++|+..+ .|.|.+....+++.+.+++ -.+.|..++|+. |++.|++.+.+|.|++||+....+++++....+ .-++
T Consensus       315 ~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts  392 (514)
T KOG2055|consen  315 SNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTS  392 (514)
T ss_pred             CCeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceee
Confidence            99999988 8999999999999988887 567799999998 888888888999999999999999998864322 2356


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEcCCCccc-ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE---eCCeEEEEEcCCc
Q 001311          896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQ-KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL  971 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~---~d~~i~iwd~~~~  971 (1102)
                      +|.|+++.|||+|+..|.|-|||.++.-.. ...++.....-.   ..|+.+.|++|++.||.+   ....+++-.+.+.
T Consensus       393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~  469 (514)
T KOG2055|consen  393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSC  469 (514)
T ss_pred             eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccce
Confidence            888899999999999999999997653211 111222222111   478999999999999984   5678999999999


Q ss_pred             eEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311          972 ECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus       972 ~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
                      .....|.... --+.|+|++|||.+.+||.|..+|.|.+|.+.
T Consensus       470 TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  470 TVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            9888887532 25679999999999999999999999999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=3e-22  Score=206.14  Aligned_cols=234  Identities=20%  Similarity=0.322  Sum_probs=181.7

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      ....++.+|++.=..++|++...-.|++|+.|++|++||+.......            ........+.+|...|..++|
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~------------~~~~p~~~~~~h~~~VeDV~~  235 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED------------KVVDPKTIFSGHEDVVEDVAW  235 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC------------ccccceEEeecCCcceehhhc
Confidence            44457888999889999999888789999999999999997654320            111223368999999999999


Q ss_pred             cc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEee
Q 001311          417 SP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFE  494 (1102)
Q Consensus       417 sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~  494 (1102)
                      ++ +..++++++.|+.+.|||++++ ..+......+|.+.|.|++|+|-+.. +|||||.|++|++||++.- ++++++.
T Consensus       236 h~~h~~lF~sv~dd~~L~iwD~R~~-~~~~~~~~~ah~~~vn~~~fnp~~~~-ilAT~S~D~tV~LwDlRnL~~~lh~~e  313 (422)
T KOG0264|consen  236 HPLHEDLFGSVGDDGKLMIWDTRSN-TSKPSHSVKAHSAEVNCVAFNPFNEF-ILATGSADKTVALWDLRNLNKPLHTFE  313 (422)
T ss_pred             cccchhhheeecCCCeEEEEEcCCC-CCCCcccccccCCceeEEEeCCCCCc-eEEeccCCCcEEEeechhcccCceecc
Confidence            99 7788899999999999999974 33444467899999999999999877 8999999999999999974 5789999


Q ss_pred             cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311          495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  574 (1102)
Q Consensus       495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  574 (1102)
                      +|...|..|.|+|..+ ..|++++.|+.+.+||+..-+....-.........+       ....|.+...+.-+.|+|..
T Consensus       314 ~H~dev~~V~WSPh~e-tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl-------lF~HgGH~~kV~DfsWnp~e  385 (422)
T KOG0264|consen  314 GHEDEVFQVEWSPHNE-TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL-------LFIHGGHTAKVSDFSWNPNE  385 (422)
T ss_pred             CCCcceEEEEeCCCCC-ceeEecccCCcEEEEeccccccccChhhhccCCcce-------eEEecCcccccccccCCCCC
Confidence            9999999999988665 689999999999999998654433211111111111       22333344467777777777


Q ss_pred             CEE-EEEeCCCeEEEEECC
Q 001311          575 NRF-LAAGDDFSIKFWDMD  592 (1102)
Q Consensus       575 ~~l-~~~~~dg~i~iwd~~  592 (1102)
                      .++ +++++|+.+.||.+.
T Consensus       386 PW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  386 PWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             CeEEEEecCCceEEEeecc
Confidence            765 557899999999985

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=7.3e-21  Score=202.41  Aligned_cols=458  Identities=14%  Similarity=0.191  Sum_probs=288.9

Q ss_pred             CeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee
Q 001311          410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  489 (1102)
Q Consensus       410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~  489 (1102)
                      .|..++|-|||..|+.+.. ..+.|||...|..+.   ++++|.+.|+|++|+.||+  .+++|+.|+.|.+|.-. -+-
T Consensus        14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~k-lEG   86 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSK-LEG   86 (1081)
T ss_pred             chheeEECCCCceEEEecC-CEEEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEeccc-ccc
Confidence            8999999999999988754 459999999998766   5999999999999999999  79999999999999843 233


Q ss_pred             eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                      +-.+. |.+.|.|+.|+|-.  +.|++++. ...-+|.......                       ........+.+++
T Consensus        87 ~LkYS-H~D~IQCMsFNP~~--h~LasCsL-sdFglWS~~qK~V-----------------------~K~kss~R~~~Cs  139 (1081)
T KOG1538|consen   87 ILKYS-HNDAIQCMSFNPIT--HQLASCSL-SDFGLWSPEQKSV-----------------------SKHKSSSRIICCS  139 (1081)
T ss_pred             eeeec-cCCeeeEeecCchH--HHhhhcch-hhccccChhhhhH-----------------------HhhhhheeEEEee
Confidence            33343 99999999987654  67888876 3455675543211                       1111123566677


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC-CCCCCCcCeEEEcCCC-----CEEEEEECCCcEEEEEccCCcccee
Q 001311          570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFNKDG-----CLLAVSTNDNGIKILATSDGIRLLR  643 (1102)
Q Consensus       570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~  643 (1102)
                      |..||.+++.|-.+|+|.+-+. +++....++. .+....|.+++|+|..     ..+++.....++.++.+...  .+ 
T Consensus       140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~--~I-  215 (1081)
T KOG1538|consen  140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK--QI-  215 (1081)
T ss_pred             ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce--ee-
Confidence            7778889999999999999985 4444444433 3345689999999953     34555555555555543211  00 


Q ss_pred             ecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCC
Q 001311          644 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  723 (1102)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~  723 (1102)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (1081)
T KOG1538|consen  216 --------------------------------------------------------------------------------  215 (1081)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCC
Q 001311          724 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  803 (1102)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  803 (1102)
                        ++.+.+       .-...++.+.++|.+++.||.|+.+.+|.-                       .|..+.. +.  
T Consensus       216 --gk~r~L-------~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-----------------------~GvrLGT-vg--  260 (1081)
T KOG1538|consen  216 --GKDRAL-------NFDPCCISYFTNGEYILLGGSDKQLSLFTR-----------------------DGVRLGT-VG--  260 (1081)
T ss_pred             --cccccC-------CCCchhheeccCCcEEEEccCCCceEEEee-----------------------cCeEEee-cc--
Confidence              001111       123357888899999999999999998853                       2222221 11  


Q ss_pred             CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee------------------e-cCCCCCee------EEEEec
Q 001311          804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT------------------F-MPPPPAAT------FLAFHP  857 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~------------------~-~~~~~~i~------~l~~sp  857 (1102)
                      .....|+.++..|++++++.|+ ||+|..|++...+....                  + .+....|.      .+++- 
T Consensus       261 ~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiY-  339 (1081)
T KOG1538|consen  261 EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIY-  339 (1081)
T ss_pred             ccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhh-
Confidence            1577899999999999999999 99999999753221100                  0 11111122      22332 


Q ss_pred             CCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ceeEEEe---cCCCEEEEEcCCCcEEEEEcCCCcccce------
Q 001311          858 QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFS---HALNVLVSSGADSQLCVWSSDGWEKQKN------  927 (1102)
Q Consensus       858 ~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s---~d~~~l~s~s~Dg~i~vwd~~~~~~~~~------  927 (1102)
                        .+.||+--.+ .|.+|.+.+++....-..-... +..+.+|   -.++.++.+ .+..+..+|+.+-+...+      
T Consensus       340 --rnrLAVQLpe-ki~iYel~se~~~~mhY~v~ekI~kkf~cSLlVVc~~HiVlC-qekrLqClDF~Gvk~ReW~M~S~i  415 (1081)
T KOG1538|consen  340 --RNRLAVQLPE-KILIYELYSEDLSDMHYRVKEKIIKKFECSLLVVCANHIVLC-QEKRLQCLDFSGVKEREWQMESLI  415 (1081)
T ss_pred             --hhhheecccc-eEEEEeccccccccchhHHHHHHHhhccceEEEEEcCeEEEE-cccceeeecccchhhhhhhHHHHH
Confidence              2356655444 6888888765432111000111 1112221   123444433 467788888876444332      


Q ss_pred             eeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCe
Q 001311          928 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT 1006 (1102)
Q Consensus       928 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~ 1006 (1102)
                      +.+....|..             ...-|.+| .+|.|.-.=+++.-.+...   .....|.|+.++...+.||+..+.++
T Consensus       416 RYikV~GGP~-------------gREgL~vGlknGqV~kiF~dN~~PiLl~---~~~tAvrClDINA~R~kLAvVDD~~~  479 (1081)
T KOG1538|consen  416 RYIKVIGGPP-------------GREGLLVGLKNGQVLKIFVDNLFPILLL---KQATAVRCLDINASRKKLAVVDDNDT  479 (1081)
T ss_pred             HhhhhhcCCC-------------CcceeEEEecCCcEEEEEecCCchhhee---cccceeEEeeccCCcceEEEEccCCe
Confidence            2223332211             12224444 5665432223332222211   22678999999999999999999999


Q ss_pred             EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe
Q 001311         1007 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus      1007 I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
                      ..++|+.+++.+.+-.       |     ++  +++|..+..++|+-.+
T Consensus       480 c~v~DI~t~elL~QEp-------g-----~n--SV~wNT~~E~MlcfT~  514 (1081)
T KOG1538|consen  480 CLVYDIDTKELLFQEP-------G-----AN--SVAWNTQCEDMLCFTG  514 (1081)
T ss_pred             EEEEEccCCceEeecC-------C-----Cc--eEEeeccccceEEEec
Confidence            9999999999986543       3     45  7777776655655443

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=5.1e-22  Score=204.42  Aligned_cols=243  Identities=17%  Similarity=0.244  Sum_probs=195.9

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      -.+.|.|++-+|+|.+ |+.|+..|.|++|.+.+|+.+.                   ++.+|...|+|+.|+-||.+|+
T Consensus        80 ~Pg~v~al~s~n~G~~-l~ag~i~g~lYlWelssG~LL~-------------------v~~aHYQ~ITcL~fs~dgs~ii  139 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYF-LLAGTISGNLYLWELSSGILLN-------------------VLSAHYQSITCLKFSDDGSHII  139 (476)
T ss_pred             cccceeeeecCCCceE-EEeecccCcEEEEEeccccHHH-------------------HHHhhccceeEEEEeCCCcEEE
Confidence            4578999999999996 7777788999999999999886                   5789999999999999999999


Q ss_pred             EEECCCeEEEEEccC------CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311          425 VAYSRHIVQIYSYHG------GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  498 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~------~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~  498 (1102)
                      +||.||.|.+|++..      .....+...+..|.-+|+++...+.|...+|+|+|.|.++++||+..|..+.++. ...
T Consensus       140 TgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~  218 (476)
T KOG0646|consen  140 TGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPS  218 (476)
T ss_pred             ecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCC
Confidence            999999999998742      1134556678999999999999877655589999999999999999999998886 567


Q ss_pred             CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC--ceeeecccc-CceeEEEEcCCCC
Q 001311          499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG--TRTYQGFRK-RSLGVVQFDTTKN  575 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--~~~~~~~~~-~~i~~~~~~~~~~  575 (1102)
                      .+.++++.  +.+..++.|+.+|.|.+.++......      ...|..-.++..+  ...+.||.+ ..|+|++++-||.
T Consensus       219 si~av~lD--pae~~~yiGt~~G~I~~~~~~~~~~~------~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt  290 (476)
T KOG0646|consen  219 SIKAVALD--PAERVVYIGTEEGKIFQNLLFKLSGQ------SAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGT  290 (476)
T ss_pred             cceeEEEc--ccccEEEecCCcceEEeeehhcCCcc------cccccccccccccceeeeeccccCCcceeEEEEecCcc
Confidence            78888874  45579999999999998887653321      1111111112222  255667776 6899999999999


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC
Q 001311          576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  618 (1102)
Q Consensus       576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~  618 (1102)
                      .|++|+.||.|+|||+.+.++++++...  .+.|+.+.+.|-.
T Consensus       291 lLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  291 LLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPLE  331 (476)
T ss_pred             EEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeeccc
Confidence            9999999999999999999999888732  3368888887643

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=3.9e-20  Score=204.00  Aligned_cols=294  Identities=12%  Similarity=0.134  Sum_probs=204.7

Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      ++.+++++.|+.|++||+.+++.+.   .+..|. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..+.. 
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~---~~~~~~-~~~~l~~~~dg~~-l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTR---TFPVGQ-RPRGITLSKDGKL-LYVCASDSDTIQVIDLATGEVIGTLPSGPD-   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEE---EEECCC-CCCceEECCCCCE-EEEEECCCCeEEEEECCCCcEEEeccCCCC-
Confidence            3578899999999999999987654   344443 4678999999984 346778899999999999998887765544 


Q ss_pred             eEEEeeeecCCccEEE-EEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          500 VYSVCPHHKENIQFIF-STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~-s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      +..++|+  ++++.++ +++.|+.|++||+.+......+... .                     ....++++|++.+++
T Consensus        75 ~~~~~~~--~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~-~---------------------~~~~~~~~~dg~~l~  130 (300)
T TIGR03866        75 PELFALH--PNGKILYIANEDDNLVTVIDIETRKVLAEIPVG-V---------------------EPEGMAVSPDGKIVV  130 (300)
T ss_pred             ccEEEEC--CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC-C---------------------CcceEEECCCCCEEE
Confidence            4556664  4556554 4566899999999875443333211 1                     233456666667788


Q ss_pred             EEeCCC-eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCCccceeecccccccccccC
Q 001311          579 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTS  656 (1102)
Q Consensus       579 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  656 (1102)
                      ++..++ .+.+||..+++.+..+....   ...+++|++++++|++++ .++.|++||+.++ +....+..+        
T Consensus       131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~--------  198 (300)
T TIGR03866       131 NTSETTNMAHFIDTKTYEIVDNVLVDQ---RPRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFE--------  198 (300)
T ss_pred             EEecCCCeEEEEeCCCCeEEEEEEcCC---CccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeec--------
Confidence            877654 57788998887766554322   356799999999886554 5899999998776 222211100        


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311          657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  736 (1102)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  736 (1102)
                                                                                                      
T Consensus       199 --------------------------------------------------------------------------------  198 (300)
T TIGR03866       199 --------------------------------------------------------------------------------  198 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                                  ..+.      ..                                            .......++|+|
T Consensus       199 ------------~~~~------~~--------------------------------------------~~~~~~~i~~s~  216 (300)
T TIGR03866       199 ------------IPGV------HP--------------------------------------------EAVQPVGIKLTK  216 (300)
T ss_pred             ------------cccc------cc--------------------------------------------ccCCccceEECC
Confidence                        0000      00                                            011123467788


Q ss_pred             CCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEE-eCCCcEEEEEeecceeeeeeccccccc
Q 001311          817 NDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKRI  893 (1102)
Q Consensus       817 d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~V  893 (1102)
                      ++++++++.  ++.|.+||+.+++....+. +...+.+++|+| ++++|+++ ..+|.|++||+.+++++..+... ...
T Consensus       217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~  293 (300)
T TIGR03866       217 DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLP  293 (300)
T ss_pred             CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-ccc
Confidence            888755432  6789999998887766553 445789999999 88888876 56899999999999999988754 556


Q ss_pred             eeEEEec
Q 001311          894 TGLAFSH  900 (1102)
Q Consensus       894 ~~l~~s~  900 (1102)
                      ++++|+|
T Consensus       294 ~~~~~~~  300 (300)
T TIGR03866       294 WGVVVRP  300 (300)
T ss_pred             ceeEeCC
Confidence            8888865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=3.1e-21  Score=186.20  Aligned_cols=246  Identities=17%  Similarity=0.246  Sum_probs=185.3

Q ss_pred             cccccceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE
Q 001311          736 NLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  814 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~  814 (1102)
                      .+|.-.|..+.|-|-.. .+.+++-|.++++||.++-+..                     ..  +   ..++.|.+-++
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a---------------------~~--F---~me~~VYsham  151 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA---------------------VD--F---KMEGKVYSHAM  151 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceee---------------------EE--e---ecCceeehhhc
Confidence            34778899999888444 5666677999999997542110                     00  0   13555666677


Q ss_pred             ecCCC---eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeeee---
Q 001311          815 SKNDS---YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKL---  886 (1102)
Q Consensus       815 s~d~~---~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l---  886 (1102)
                      ||-..   ++|+|. |-.|++-|+.+|...+++.+|.+.|.++.|+|...-.||+|+.||.|++||++.. .+...+   
T Consensus       152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h  231 (397)
T KOG4283|consen  152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH  231 (397)
T ss_pred             ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence            76433   677777 6789999999999999999999999999999977778999999999999999753 233332   


Q ss_pred             -----------ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc-E
Q 001311          887 -----------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI-H  954 (1102)
Q Consensus       887 -----------~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-~  954 (1102)
                                 .+|.+.|.+++|+.|+.++++++.|..+++|+...|+........+......  ..-..+. +.+.. +
T Consensus       232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~--~~~~~~~-~~~s~vf  308 (397)
T KOG4283|consen  232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT--SFAVHIQ-SMDSDVF  308 (397)
T ss_pred             cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc--cceEEEe-ecccceE
Confidence                       3578899999999999999999999999999999887544333222221111  1111223 33333 3


Q ss_pred             EEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311          955 FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus       955 l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
                      +..-.++.+.++.+-.+..++.+.  .|...|.+.++.|+-+...++..|+.|..|-.
T Consensus       309 v~~p~~~~lall~~~sgs~ir~l~--~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  309 VLFPNDGSLALLNLLEGSFVRRLS--THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EEEecCCeEEEEEccCceEEEeee--cccceeeEEeecCchhhhhccccCCccccccc
Confidence            333467999999999999999987  77899999999999999999999999999976

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.1e-20  Score=199.55  Aligned_cols=313  Identities=17%  Similarity=0.225  Sum_probs=227.3

Q ss_pred             EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEE
Q 001311          447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  526 (1102)
Q Consensus       447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~w  526 (1102)
                      ..+.||++.|.+|...|.|.  .|++|+.||+|+||.+.+|.|++++. ..+.|.+++|++.++...|+.+-.+. +.+-
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~iv  469 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIV  469 (733)
T ss_pred             eeEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEe
Confidence            35889999999999999998  89999999999999999999999887 56789999999888766666655444 5554


Q ss_pred             EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE----eCCCeEEEEECCCcce----EE
Q 001311          527 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA----GDDFSIKFWDMDSVQL----LT  598 (1102)
Q Consensus       527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~----~~  598 (1102)
                      +..-+..+.                      .+.+.            ..|.++    ..++.+..|.-.....    +.
T Consensus       470 np~~G~~~e----------------------~~~t~------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~  515 (733)
T KOG0650|consen  470 NPIFGDRLE----------------------VGPTK------------ELLASAPNESEPDAAVVTWSRASLDELEKGVC  515 (733)
T ss_pred             Cccccchhh----------------------hcchh------------hhhhcCCCccCCcccceeechhhhhhhccceE
Confidence            433221111                      00000            112222    2356778887552221    11


Q ss_pred             EEcCCCCCCCcCeEEEcCCCCEEEEEECCC---cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhh
Q 001311          599 SIDADGGLPASPRIRFNKDGCLLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAAT  675 (1102)
Q Consensus       599 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  675 (1102)
                      ..-.+  ...|+.+.|+..|.||++...++   .|.|.++... .....                  |            
T Consensus       516 ~~I~~--~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~-~sQ~P------------------F------------  562 (733)
T KOG0650|consen  516 IVIKH--PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR-KSQSP------------------F------------  562 (733)
T ss_pred             EEEec--CCccceeeeecCCceEEEeccCCCcceEEEEecccc-cccCc------------------h------------
Confidence            22112  34699999999999999987643   4555544332 00000                  0            


Q ss_pred             ccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEE
Q 001311          676 SAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAIL  755 (1102)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  755 (1102)
                                                                                  ....+.|.++.|.|...+++
T Consensus       563 ------------------------------------------------------------~kskG~vq~v~FHPs~p~lf  582 (733)
T KOG0650|consen  563 ------------------------------------------------------------RKSKGLVQRVKFHPSKPYLF  582 (733)
T ss_pred             ------------------------------------------------------------hhcCCceeEEEecCCCceEE
Confidence                                                                        11346788999999999888


Q ss_pred             EeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEc
Q 001311          756 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNM  834 (1102)
Q Consensus       756 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~  834 (1102)
                      +++.. .++|||+                      ..+.++...++   ....|..++++|.|..|+.++ |+.+..||+
T Consensus       583 VaTq~-~vRiYdL----------------------~kqelvKkL~t---g~kwiS~msihp~GDnli~gs~d~k~~WfDl  636 (733)
T KOG0650|consen  583 VATQR-SVRIYDL----------------------SKQELVKKLLT---GSKWISSMSIHPNGDNLILGSYDKKMCWFDL  636 (733)
T ss_pred             EEecc-ceEEEeh----------------------hHHHHHHHHhc---CCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence            87765 6777776                      33333333333   467799999999999999999 999999999


Q ss_pred             CC-CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec------c---eeeeeecccccc----ceeEEEec
Q 001311          835 MT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV------D---EVKSKLKGHSKR----ITGLAFSH  900 (1102)
Q Consensus       835 ~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~------~---~~~~~l~~h~~~----V~~l~~s~  900 (1102)
                      .- .+..+++..|...++.++|++ .-.++++|+.||++.|+.-.-      .   -.+..+.+|...    |..+.|+|
T Consensus       637 dlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP  715 (733)
T KOG0650|consen  637 DLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHP  715 (733)
T ss_pred             ccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccC
Confidence            74 356778899999999999999 888999999999999985321      1   235678899776    88999999


Q ss_pred             CCCEEEEEcCCCcEEEE
Q 001311          901 ALNVLVSSGADSQLCVW  917 (1102)
Q Consensus       901 d~~~l~s~s~Dg~i~vw  917 (1102)
                      ...+|++++.||+|++|
T Consensus       716 ~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  716 RQPWLFSAGADGTIRLF  732 (733)
T ss_pred             CCceEEecCCCceEEee
Confidence            99999999999999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=8.6e-21  Score=194.68  Aligned_cols=291  Identities=15%  Similarity=0.242  Sum_probs=224.4

Q ss_pred             ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC--CeeeEEeecCCCCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcC
Q 001311          453 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--GAKQYIFEGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYD  529 (1102)
Q Consensus       453 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~  529 (1102)
                      .++|++|.|.|...  ++++++.|++++||-+..  ...++.+.-...+|.+.+|.+  +|. .+++++....++.||+.
T Consensus       213 ~~~I~sv~FHp~~p--lllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p--~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP--LLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAP--NGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCCCc--eEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecC--CCceEEEecccceEEEEeecc
Confidence            46899999999988  899999999999998763  345666666678899999865  445 89999999999999998


Q ss_pred             CCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCc
Q 001311          530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS  609 (1102)
Q Consensus       530 ~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  609 (1102)
                      +.+....                  ....|.....+....+++++++|+..|..|.|.+-...+++.+..++..+.   |
T Consensus       289 ~ak~~k~------------------~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~---v  347 (514)
T KOG2055|consen  289 TAKVTKL------------------KPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV---V  347 (514)
T ss_pred             ccccccc------------------cCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE---E
Confidence            7543321                  112223334566677788888999999999999999999999999987654   8


Q ss_pred             CeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccccccc
Q 001311          610 PRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSI  689 (1102)
Q Consensus       610 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  689 (1102)
                      ..++|+.|++.|++.+.+|.|.+||++.. .++..+...                                         
T Consensus       348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~-~~~~rf~D~-----------------------------------------  385 (514)
T KOG2055|consen  348 SDFTFSSDSKELLASGGTGEVYVWNLRQN-SCLHRFVDD-----------------------------------------  385 (514)
T ss_pred             eeEEEecCCcEEEEEcCCceEEEEecCCc-ceEEEEeec-----------------------------------------
Confidence            89999999999999999999999999877 444333210                                         


Q ss_pred             CCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeecc
Q 001311          690 PGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  769 (1102)
Q Consensus       690 ~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~  769 (1102)
                                            |                          .-.-++++.+++|.++++|+..|.+-|||.+
T Consensus       386 ----------------------G--------------------------~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~  417 (514)
T KOG2055|consen  386 ----------------------G--------------------------SVHGTSLCISLNGSYLATGSDSGIVNIYDGN  417 (514)
T ss_pred             ----------------------C--------------------------ccceeeeeecCCCceEEeccCcceEEEeccc
Confidence                                  0                          0122567888999999999999999999864


Q ss_pred             ccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCC
Q 001311          770 RTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPP  846 (1102)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~  846 (1102)
                      ..-.+...+.+.+                   ..+-...|+++.|++|.+.||.++   ...+++-.+.+......+...
T Consensus       418 s~~~s~~PkPik~-------------------~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~  478 (514)
T KOG2055|consen  418 SCFASTNPKPIKT-------------------VDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTS  478 (514)
T ss_pred             hhhccCCCCchhh-------------------hhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCC
Confidence            4222111111111                   012456799999999999999998   477999999887777666544


Q ss_pred             ---CCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311          847 ---PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       847 ---~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                         -+.|+|++||| .+.++|.|.++|.|.+|.+.
T Consensus       479 n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  479 NTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCcccceEEEEecC-CCceEEeecCCCceeeEeec
Confidence               34699999999 89999999999999999874

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=3.5e-21  Score=205.12  Aligned_cols=290  Identities=12%  Similarity=0.118  Sum_probs=207.4

Q ss_pred             ceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEE
Q 001311          752 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKIS  830 (1102)
Q Consensus       752 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~  830 (1102)
                      ..|+.+.++|.|.++|.....+.               ++..++..  .  ..|.+.|..+.|-|....|++++ |.+++
T Consensus        65 HiLavadE~G~i~l~dt~~~~fr---------------~ee~~lk~--~--~aH~nAifDl~wapge~~lVsasGDsT~r  125 (720)
T KOG0321|consen   65 HILAVADEDGGIILFDTKSIVFR---------------LEERQLKK--P--LAHKNAIFDLKWAPGESLLVSASGDSTIR  125 (720)
T ss_pred             ceEEEecCCCceeeecchhhhcc---------------hhhhhhcc--c--ccccceeEeeccCCCceeEEEccCCceee
Confidence            35677777899999987543332               11111111  1  23999999999999777888887 89999


Q ss_pred             EEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce---------------------------
Q 001311          831 LFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------------------------  881 (1102)
Q Consensus       831 iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------------------------  881 (1102)
                      +||+++.+++..  +.+|.+.|.+++|.|.+...+++|+.||.|.|||++-..                           
T Consensus       126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            999999988877  899999999999999889999999999999999986321                           


Q ss_pred             eeeeecccccccee---EEEecCCCEEEEEcC-CCcEEEEEcCCCcccce-eeeecCC--CCCCCCCCCcEEEEccCCcE
Q 001311          882 VKSKLKGHSKRITG---LAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKN-RFLQIPT--GRTPTAQSDTRVQFHQDQIH  954 (1102)
Q Consensus       882 ~~~~l~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~-~~~~~~~--~~~~~~~~v~~~~~spdg~~  954 (1102)
                      .+....+|...|.+   +.+..|...||++|. |+.|+|||+........ .......  .+......+.++.....|.+
T Consensus       206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~  285 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY  285 (720)
T ss_pred             cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence            11223345666666   666789999999988 99999999987543211 1111111  11111235667777777888


Q ss_pred             EEE-EeCCeEEEEEcCCceEeeeeccCCCCCC--eeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCC
Q 001311          955 FLV-VHETQLAIFETTKLECVKQWVPRESSAP--ITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1031 (1102)
Q Consensus       955 l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~--v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh 1031 (1102)
                      |.+ +.|+.|+.|++.+...-......++...  -..-..+||+.+|++|+.|...++|.+.+.+.--.+.      .||
T Consensus       286 L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------~Gh  359 (720)
T KOG0321|consen  286 LFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------LGH  359 (720)
T ss_pred             EEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh------hCc
Confidence            888 6999999999987554332222232111  1222469999999999999999999998876543222      244


Q ss_pred             CCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1032 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1032 ~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      .-+ |.  .++|.|.+-.-++++++|-.+++|++..+-
T Consensus       360 t~e-Vt--~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  360 TRE-VT--TVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             ceE-EE--EEeeccccCCCceeeccCcceEEEeccCch
Confidence            333 44  888888776778999999999999996654

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=6.2e-20  Score=178.89  Aligned_cols=267  Identities=19%  Similarity=0.382  Sum_probs=189.4

Q ss_pred             eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC----eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311          450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  525 (1102)
Q Consensus       450 ~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~  525 (1102)
                      .+|.+-|.++.|.+-|+  .++||+.|++|+|||.++.    .+....+.|.+.|..+.|....-|+.+++++.|+++.+
T Consensus        10 s~h~DlihdVs~D~~GR--RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i   87 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGR--RMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI   87 (361)
T ss_pred             cCCcceeeeeeecccCc--eeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence            47999999999999999  7999999999999997543    45567789999999999988888999999999999999


Q ss_pred             EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC
Q 001311          526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  605 (1102)
Q Consensus       526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  605 (1102)
                      |.-..    ..+..                                             .=+-|..     ..++.  ..
T Consensus        88 WEE~~----~~~~~---------------------------------------------~~~~Wv~-----~ttl~--Ds  111 (361)
T KOG2445|consen   88 WEEQE----KSEEA---------------------------------------------HGRRWVR-----RTTLV--DS  111 (361)
T ss_pred             eeecc----ccccc---------------------------------------------ccceeEE-----EEEee--cC
Confidence            95421    11111                                             1111211     11222  22


Q ss_pred             CCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311          606 LPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  683 (1102)
Q Consensus       606 ~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1102)
                      ...|+.+.|.|  -|-.|++++.||.+|||+..+..                                            
T Consensus       112 rssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~--------------------------------------------  147 (361)
T KOG2445|consen  112 RSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPM--------------------------------------------  147 (361)
T ss_pred             CcceeEEEecchhcceEEEEeccCcEEEEEecCCcc--------------------------------------------
Confidence            33688899999  57889999999999999865441                                            


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311          684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  763 (1102)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i  763 (1102)
                                                   .+.-|.+..     +++.+..               |-|            
T Consensus       148 -----------------------------nLs~W~Lq~-----Ei~~~~~---------------pp~------------  166 (361)
T KOG2445|consen  148 -----------------------------NLSQWTLQH-----EIQNVID---------------PPG------------  166 (361)
T ss_pred             -----------------------------ccccchhhh-----hhhhccC---------------Ccc------------
Confidence                                         111222221     0000000               000            


Q ss_pred             EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC---CCeEEEEeCC------eEEEEEc
Q 001311          764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN---DSYVMSASGG------KISLFNM  834 (1102)
Q Consensus       764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d---~~~las~sdg------~I~iwd~  834 (1102)
                                                              .+..+..|+.|++.   ..+||+|+|.      .+.||..
T Consensus       167 ----------------------------------------~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~  206 (361)
T KOG2445|consen  167 ----------------------------------------KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY  206 (361)
T ss_pred             ----------------------------------------cccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence                                                    02233334444432   2366777643      6788876


Q ss_pred             CCC----ceeeeecCCCCCeeEEEEecCCC---cEEEEEeCCCcEEEEEeecc--------------------eeeeeec
Q 001311          835 MTF----KTMATFMPPPPAATFLAFHPQDN---NIIAIGMDDSSIQIYNVRVD--------------------EVKSKLK  887 (1102)
Q Consensus       835 ~~~----~~~~~~~~~~~~i~~l~~sp~d~---~~lasg~~dg~v~vwd~~~~--------------------~~~~~l~  887 (1102)
                      ...    ..+.++.+|..+|+.++|.|.-|   .+||+++.|| |+||.+...                    +.+..+.
T Consensus       207 ~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~  285 (361)
T KOG2445|consen  207 NENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD  285 (361)
T ss_pred             cCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeecc
Confidence            532    34566889999999999999544   4899999999 999998731                    2445678


Q ss_pred             cccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      +|.+.|+.+.|.-.|..|++.|.||.||+|...
T Consensus       286 ~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  286 DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             CCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            899999999999999999999999999999754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=5e-20  Score=179.72  Aligned_cols=275  Identities=12%  Similarity=0.177  Sum_probs=207.2

Q ss_pred             CCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311          335 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  414 (1102)
Q Consensus       335 ~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  414 (1102)
                      .|.....++.|.. ..|+.||+.|.+ ||+|..||.|.|||+.|...-.                   ++.+|..+|.++
T Consensus        13 ~PEel~~tld~~~-a~~~~Fs~~G~~-lAvGc~nG~vvI~D~~T~~iar-------------------~lsaH~~pi~sl   71 (405)
T KOG1273|consen   13 YPEELTHTLDNPL-AECCQFSRWGDY-LAVGCANGRVVIYDFDTFRIAR-------------------MLSAHVRPITSL   71 (405)
T ss_pred             ChHhhceeccCCc-cceEEeccCcce-eeeeccCCcEEEEEccccchhh-------------------hhhccccceeEE
Confidence            3555666777666 899999999996 9999999999999998865332                   689999999999


Q ss_pred             EEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311          415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  494 (1102)
Q Consensus       415 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~  494 (1102)
                      +||+||+.|++++.|..|++||+..|.+++.+    ....+|+.+.|.|-.....++ .-.+..-.+-++..++.. .+.
T Consensus        72 ~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~-~Lp  145 (405)
T KOG1273|consen   72 CWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHS-VLP  145 (405)
T ss_pred             EecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEE-EEecCCcEEEEecCCcee-ecc
Confidence            99999999999999999999999999977643    246899999999987763444 334444555555543221 111


Q ss_pred             -cCCCC--eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCC-CeeeEEEEccCCceeeeccccCc------
Q 001311          495 -GHEAP--VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRS------  564 (1102)
Q Consensus       495 -~h~~~--v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~------  564 (1102)
                       ...+.  +.+-+-.++..|+++++|...|.+.++|..+.++...+.... ..|..+.++..|+.++....+..      
T Consensus       146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~  225 (405)
T KOG1273|consen  146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEI  225 (405)
T ss_pred             CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence             11111  111111246778999999999999999999988887776665 77888888888885444333322      


Q ss_pred             --------------------------eeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC
Q 001311          565 --------------------------LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  617 (1102)
Q Consensus       565 --------------------------i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  617 (1102)
                                                -.+++|+.+|.++++++ .-..++||.-..|.+++.+.+..+ .....+.|+|-
T Consensus       226 ~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp~  304 (405)
T KOG1273|consen  226 SDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHPV  304 (405)
T ss_pred             hhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeecccccc
Confidence                                      23478999999998876 467899999999999999977653 24667889998


Q ss_pred             CCEEEEEECCCcEEEEEccCC
Q 001311          618 GCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       618 ~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ...+++- ..|.+++|.....
T Consensus       305 rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  305 RPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             eeeeeec-cCCceEEEEeecc
Confidence            8888777 6799999986543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=3.5e-20  Score=195.78  Aligned_cols=323  Identities=13%  Similarity=0.258  Sum_probs=231.5

Q ss_pred             eeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC--EEEEEECCCcEEE
Q 001311          555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLAVSTNDNGIKI  632 (1102)
Q Consensus       555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i  632 (1102)
                      .++.||. +.+.++..+|.|.+|++|+.||+|+||.+.+|.++.++...+.   |.|++|+|.+.  .|+++.. +.+.|
T Consensus       394 lvyrGHt-g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~~~vLAvA~~-~~~~i  468 (733)
T KOG0650|consen  394 LVYRGHT-GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSDLCVLAVAVG-ECVLI  468 (733)
T ss_pred             eeEeccC-CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce---eEEEEecCCCCceeEEEEec-CceEE
Confidence            3445554 4889999999999999999999999999999999999987654   99999999654  4555544 34666


Q ss_pred             EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcccc----c
Q 001311          633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT----E  708 (1102)
Q Consensus       633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~  708 (1102)
                      .+..-|.+.....   +.                                                    ..+.+    .
T Consensus       469 vnp~~G~~~e~~~---t~----------------------------------------------------ell~~~~~~~  493 (733)
T KOG0650|consen  469 VNPIFGDRLEVGP---TK----------------------------------------------------ELLASAPNES  493 (733)
T ss_pred             eCccccchhhhcc---hh----------------------------------------------------hhhhcCCCcc
Confidence            6654442111100   00                                                    00110    1


Q ss_pred             cCCCccceEecccCCCCC--ccccccCCCcccccceEEEEEccCCceEEEeecC---ceEEeeeccccccCCCCcccccc
Q 001311          709 ESNDKSKVWKLTELSEPN--QCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASV  783 (1102)
Q Consensus       709 ~~d~~i~~w~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~  783 (1102)
                      ..+..+..|.-.......  .+..+     .|...|..+.|+..|.+|++...+   ..+.|+++.....          
T Consensus       494 ~p~~~~~~W~~~~~~e~~~~v~~~I-----~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------  558 (733)
T KOG0650|consen  494 EPDAAVVTWSRASLDELEKGVCIVI-----KHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------  558 (733)
T ss_pred             CCcccceeechhhhhhhccceEEEE-----ecCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------
Confidence            122345556544222111  12222     277899999999999999988764   5677776532211          


Q ss_pred             cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEE
Q 001311          784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII  863 (1102)
Q Consensus       784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l  863 (1102)
                                  . ..+..  ..+.|.++.|.|...++++++...|+|||+..+..++.+......|..++++| .|.-|
T Consensus       559 ------------Q-~PF~k--skG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnl  622 (733)
T KOG0650|consen  559 ------------Q-SPFRK--SKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNL  622 (733)
T ss_pred             ------------c-Cchhh--cCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeE
Confidence                        1 11111  45678999999999999999999999999999888888888888899999999 88888


Q ss_pred             EEEeCCCcEEEEEeec-ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCC
Q 001311          864 AIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS  942 (1102)
Q Consensus       864 asg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  942 (1102)
                      +.|+.|+.+..||+.- .+..+++..|...|++|+|++.-.++++|+.||++.|+--.-...       ..+        
T Consensus       623 i~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~D-------l~q--------  687 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYND-------LLQ--------  687 (733)
T ss_pred             EEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehh-------hhc--------
Confidence            8999999999999975 467788999999999999999999999999999999985321100       000        


Q ss_pred             CcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCC----CCeeEEEEcCCCcEEEEEeCCCeEEEE
Q 001311          943 DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS----APITHATFSCDSQLVYACFLDATVCVF 1010 (1102)
Q Consensus       943 v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~----~~v~~l~~spd~~~l~s~s~Dg~I~vw 1010 (1102)
                                                 +-..+..-...+|.    ..|..+.|.|..-+|++++.||+|++|
T Consensus       688 ---------------------------npliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  688 ---------------------------NPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ---------------------------CCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence                                       00000011112443    348999999999999999999999998

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=4.4e-22  Score=214.75  Aligned_cols=232  Identities=16%  Similarity=0.250  Sum_probs=203.3

Q ss_pred             CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      |...+.++..-..++.+++|+ |..+-+|.+.....+..+.+|...|.++.|++ +..+|+.|+.+|+|++||+..++.+
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhh
Confidence            777788888777888999998 78888999988888888999999999999999 8999999999999999999999999


Q ss_pred             eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311          884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  962 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~  962 (1102)
                      ++|.+|...+.+|.|+|-+.+.++++.|..+++||+....     +.....+|.   ..+..+.|+|+|++++.+ .|..
T Consensus       106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~G-----c~~~~~s~~---~vv~~l~lsP~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen  106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKG-----CSHTYKSHT---RVVDVLRLSPDGRWVASGGEDNT  177 (825)
T ss_pred             hhhhccccCcceeeeccceEEeccccccccceehhhhccC-----ceeeecCCc---ceeEEEeecCCCceeeccCCcce
Confidence            9999999999999999999999999999999999998522     445555554   378899999999999995 6699


Q ss_pred             EEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEE
Q 001311          963 LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1042 (1102)
Q Consensus       963 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~ 1042 (1102)
                      ++|||...|+....|.  .|...+.++.|.|..-++++|+.|++|++||+++.+.+......   ..+     |.  +..
T Consensus       178 vki~d~~agk~~~ef~--~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~---~~~-----v~--~~~  245 (825)
T KOG0267|consen  178 VKIWDLTAGKLSKEFK--SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE---TDG-----VR--SLA  245 (825)
T ss_pred             eeeecccccccccccc--cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc---cCC-----ce--eee
Confidence            9999999999999887  78999999999999999999999999999999999988766522   222     55  899


Q ss_pred             ecCCCCCEEEEEecCC
Q 001311         1043 AHPQEPNEFALGLSDG 1058 (1102)
Q Consensus      1043 f~p~d~~~l~s~~~Dg 1058 (1102)
                      |.| ++..+.+|..+.
T Consensus       246 fn~-~~~~~~~G~q~s  260 (825)
T KOG0267|consen  246 FNP-DGKIVLSGEQIS  260 (825)
T ss_pred             ecC-CceeeecCchhh
Confidence            999 677877776554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=1.1e-19  Score=184.13  Aligned_cols=172  Identities=20%  Similarity=0.232  Sum_probs=140.8

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      ...+|..+.|.++....+|||+.|..|+||.++.+..-..         . ....-...+..|...|+++.|+|+|++||
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---------~-~~V~y~s~Ls~H~~aVN~vRf~p~gelLA   81 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---------D-MKVEYLSSLSRHTRAVNVVRFSPDGELLA   81 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---------c-eeEEEeecccCCcceeEEEEEcCCcCeee
Confidence            4578999999998874599999999999999876432210         0 00111226899999999999999999999


Q ss_pred             EEECCCeEEEEEcc--------C-----CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE
Q 001311          425 VAYSRHIVQIYSYH--------G-----GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  491 (1102)
Q Consensus       425 s~~~d~~v~vwd~~--------~-----~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~  491 (1102)
                      +|+.+|.|.+|...        +     .+.....+.+.+|...|..++|++|+.  ++++++.|.++++||+..|..+.
T Consensus        82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~  159 (434)
T KOG1009|consen   82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA  159 (434)
T ss_pred             ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence            99999999999876        3     222234456889999999999999999  89999999999999999999999


Q ss_pred             EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311          492 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  530 (1102)
Q Consensus       492 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~  530 (1102)
                      .+.+|...|..++|.  +-++++++-+.|...+.+.+..
T Consensus       160 ~~~dh~~yvqgvawD--pl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  160 ILDDHEHYVQGVAWD--PLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             eccccccccceeecc--hhhhhhhhhccCcccceeeeee
Confidence            999999999999985  4448999999998776665543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=5.3e-22  Score=214.17  Aligned_cols=235  Identities=12%  Similarity=0.305  Sum_probs=204.3

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      ..|...|.|+..-..++ .+++|+.|..+-+|.+.....+.                   .+.+|..+|.++.|+++..+
T Consensus        25 ~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~L   84 (825)
T KOG0267|consen   25 VAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERL   84 (825)
T ss_pred             hhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhh
Confidence            34888899998866677 59999999999999986543332                   37899999999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  502 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~  502 (1102)
                      |++|+.+|+|++||++.++.++   +|.||...+..+.|+|-+.  +.++|+.|+.+++||++...|.+.+.+|...|..
T Consensus        85 laagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~  159 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDV  159 (825)
T ss_pred             hcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEE
Confidence            9999999999999999988776   6899999999999999999  7899999999999999999999999999999999


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      +.|  .++|.++++|+.|.++++||+..++....|..|...+.++.|.|.                     .-.+++|+.
T Consensus       160 l~l--sP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~---------------------e~Lla~Gs~  216 (825)
T KOG0267|consen  160 LRL--SPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL---------------------EVLLAPGSS  216 (825)
T ss_pred             Eee--cCCCceeeccCCcceeeeecccccccccccccccccccccccCch---------------------hhhhccCCC
Confidence            997  567799999999999999999998888888888776666555444                     346788999


Q ss_pred             CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311          583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  627 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  627 (1102)
                      |++|++||+++.+.+......  ...|.+..|+|++..+++|...
T Consensus       217 d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  217 DRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CceeeeeccceeEEeeccCCc--cCCceeeeecCCceeeecCchh
Confidence            999999999988877776544  5579999999999999988664

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=8.7e-21  Score=206.65  Aligned_cols=283  Identities=15%  Similarity=0.259  Sum_probs=209.3

Q ss_pred             CCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEcc-CCceEEEeecCceEEeeeccccccCCCCcc
Q 001311          701 DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKA  779 (1102)
Q Consensus       701 ~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~  779 (1102)
                      +...++.++. ...+++.++.......+..-.-..+.....+..+.|.. +.++|++++.+|.|.+||+...-.      
T Consensus        50 ~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r------  122 (839)
T KOG0269|consen   50 DINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR------  122 (839)
T ss_pred             CcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCcccc------
Confidence            3444444443 45667766654443333221100011122334455543 466789999999999999854210      


Q ss_pred             cccccceeccCCCccccccccCCCCCCCCeeEEEEecCC-CeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEec
Q 001311          780 TASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP  857 (1102)
Q Consensus       780 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp  857 (1102)
                                   ..+ ...+..  |...+.++.|++-. .+|++|+ ||+|++||++...-..++.+....|..++|+|
T Consensus       123 -------------nk~-l~~f~E--H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp  186 (839)
T KOG0269|consen  123 -------------NKL-LTVFNE--HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSP  186 (839)
T ss_pred             -------------chh-hhHhhh--hccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeecc
Confidence                         011 011222  99999999999754 5778888 99999999999888889998888999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC
Q 001311          858 QDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR  936 (1102)
Q Consensus       858 ~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~  936 (1102)
                      ..+..++++.+.|.+++||++. .++...+.+|.++|.++.|+|++.+|||||.|++|+|||+.+.+......+...   
T Consensus       187 ~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi---  263 (839)
T KOG0269|consen  187 GYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI---  263 (839)
T ss_pred             CCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeec---
Confidence            8899999999999999999986 567788999999999999999999999999999999999998776555555444   


Q ss_pred             CCCCCCCcEEEEccCCcE-EEEE---eCCeEEEEEcCCceEe-eeeccCCCCCCeeEEEEcC-CCcEEEEEeCCCeEEEE
Q 001311          937 TPTAQSDTRVQFHQDQIH-FLVV---HETQLAIFETTKLECV-KQWVPRESSAPITHATFSC-DSQLVYACFLDATVCVF 1010 (1102)
Q Consensus       937 ~~~~~~v~~~~~spdg~~-l~~~---~d~~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~sp-d~~~l~s~s~Dg~I~vw 1010 (1102)
                          .++..+.|-|+..+ ||++   .|..|+|||++---.. .++  ..|...++.++|-. |...|.+++.||+|..-
T Consensus       264 ----apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~--~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  264 ----APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF--LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH  337 (839)
T ss_pred             ----ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee--eccCccccceeccCCCceeeEeecCccHHHHh
Confidence                37899999998665 4442   6889999999754332 233  37899999999965 56678999999998866


Q ss_pred             EcCCc
Q 001311         1011 SAANL 1015 (1102)
Q Consensus      1011 d~~~~ 1015 (1102)
                      .++++
T Consensus       338 ~~kna  342 (839)
T KOG0269|consen  338 LFKNA  342 (839)
T ss_pred             hhhcc
Confidence            55544

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.86  E-value=4.8e-20  Score=189.17  Aligned_cols=258  Identities=19%  Similarity=0.274  Sum_probs=193.2

Q ss_pred             CCCCeeEEEEecCCC-eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCe
Q 001311          345 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  422 (1102)
Q Consensus       345 h~~~v~~v~~spdg~-~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~  422 (1102)
                      +...|++++|+|... .++|+|...|.|-+||+.+.+......               ..+..|.++|.+|.|+| +-..
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~F~P~n~s~  249 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLKFSPANTSQ  249 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceEecCCChhh
Confidence            789999999999876 789999999999999996443322211               15789999999999999 6778


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee-eEEeecCCCCeE
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVY  501 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~-~~~~~~h~~~v~  501 (1102)
                      +.+.+.||+|++-|++++.. .....+..-...+..+.|+.+..  .++.+..=|...+||++++.. ...+.-|...|.
T Consensus       250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~  326 (498)
T KOG4328|consen  250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT  326 (498)
T ss_pred             eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence            99999999999999988642 22223333445678888998888  577777777999999998665 566777999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee----eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      +++++|-.. .+|+|+|.|++.+|||++......    ....|...                     +.++.|+|.+..|
T Consensus       327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs---------------------V~sAyFSPs~gtl  384 (498)
T KOG4328|consen  327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS---------------------VNSAYFSPSGGTL  384 (498)
T ss_pred             eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccce---------------------eeeeEEcCCCCce
Confidence            999987654 789999999999999998754332    22233444                     4445555555569


Q ss_pred             EEEeCCCeEEEEECC----CcceEEEEcCCCCC---CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311          578 LAAGDDFSIKFWDMD----SVQLLTSIDADGGL---PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  643 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  643 (1102)
                      ++.+.|..|+|||..    .......+......   -......|.|+..++++|-.-..|-|+|-..+ +.+.
T Consensus       385 ~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~-q~v~  456 (498)
T KOG4328|consen  385 LTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGG-QMVC  456 (498)
T ss_pred             EeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCC-EEee
Confidence            999999999999983    33334444322111   12345789999999999999889999987666 4333

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.9e-19  Score=174.23  Aligned_cols=260  Identities=13%  Similarity=0.233  Sum_probs=193.4

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CC
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DG  420 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg  420 (1102)
                      .+|.+-|.|+.|.+-|++ +|+++.|++|.|||......--..               ....+.|.+.|..+.|.+  =|
T Consensus        10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~~---------------Ts~Wrah~~Si~rV~WAhPEfG   73 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWSC---------------TSSWRAHDGSIWRVVWAHPEFG   73 (361)
T ss_pred             cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceEE---------------eeeEEecCCcEEEEEecCcccc
Confidence            358899999999999998 999999999999997543221110               013568999999999977  69


Q ss_pred             CeEEEEECCCeEEEEEcc------CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee----
Q 001311          421 SLFGVAYSRHIVQIYSYH------GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----  490 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~------~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~----  490 (1102)
                      +.+|+++.|+++.||.-.      .+.......++......|+.|.|.|....+.+++++.||.+|||+.-....+    
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            999999999999999752      1222334446777888999999999988779999999999999987654322    


Q ss_pred             --EEee-------cCCCCeEEEeeeecCC-ccEEEEEeCC-----CeEEEEEcCCCC----CeeeecCCCCeeeEEEEcc
Q 001311          491 --YIFE-------GHEAPVYSVCPHHKEN-IQFIFSTALD-----GKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSA  551 (1102)
Q Consensus       491 --~~~~-------~h~~~v~~v~~~~~~~-~~~l~s~s~d-----g~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~  551 (1102)
                        ..++       .+..+-.|+.|+++.- ..+|+.|+.+     +.++||......    ...++..+...|+.++|.|
T Consensus       154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence              2232       3566677888875432 2467777765     478899876544    2335667888899999988


Q ss_pred             CCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-----------------eEEEEc-CCCCCCCcCeEE
Q 001311          552 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------LLTSID-ADGGLPASPRIR  613 (1102)
Q Consensus       552 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~~~  613 (1102)
                      +--+.+                 ..|++++.|| |+||++....                 .+..+. ..+|...|..+.
T Consensus       234 n~Gr~y-----------------~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~  295 (361)
T KOG2445|consen  234 NIGRSY-----------------HLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVR  295 (361)
T ss_pred             ccCCce-----------------eeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEE
Confidence            744222                 3588899999 9999987311                 112221 234455899999


Q ss_pred             EcCCCCEEEEEECCCcEEEEEcc
Q 001311          614 FNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       614 ~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                      |+-.|..|++.+.||.||+|...
T Consensus       296 wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  296 WNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EeeeeeEEeecCCCceeeehhhh
Confidence            99999999999999999999754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.85  E-value=7.6e-20  Score=182.98  Aligned_cols=269  Identities=15%  Similarity=0.245  Sum_probs=192.8

Q ss_pred             CccceeeccCCCCeeEEEEecCC-CeEEEEEecCCeEEEEeCCCCe-eEEeeeeeeeccCCCCccccccccCCCCCCeEE
Q 001311          336 PKTVTRTLNQGSSPMSMDFHPVQ-QTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNR  413 (1102)
Q Consensus       336 ~~~~~~~~~h~~~v~~v~~spdg-~~llasg~~d~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  413 (1102)
                      |........|.+.|+.+.-++-| ..++|+=+..|.|.|||+...- .+..-.+.+-+    +...+...+.+|.+.=++
T Consensus       141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy~  216 (440)
T KOG0302|consen  141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGYG  216 (440)
T ss_pred             ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCcccee
Confidence            44455567799999999988875 4456666778999999985421 11110000001    111222357899999999


Q ss_pred             EEEcc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---ee
Q 001311          414 VIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AK  489 (1102)
Q Consensus       414 l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~---~~  489 (1102)
                      |+||| .-..|++|..-+.|++|...+|.-......+.+|+..|-.++|||..+. +|+|||-||+|+|||++.+   .+
T Consensus       217 LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~  295 (440)
T KOG0302|consen  217 LDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAA  295 (440)
T ss_pred             eecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccce
Confidence            99999 3345788888889999999988765444567889999999999999877 8999999999999999998   34


Q ss_pred             eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC---CCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311          490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL---GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                      +.+ +.|.+.|+.|.|+...  .+|++|+.||+++|||++.-   ..+..+..|..+|+++.|+|...            
T Consensus       296 ~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~------------  360 (440)
T KOG0302|consen  296 VST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED------------  360 (440)
T ss_pred             eEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC------------
Confidence            444 7899999999996444  49999999999999999863   34456666777777777766544            


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCcce----------------EEEEcCCCCCCCcCeEEEcCCC-CEEEEEECCCc
Q 001311          567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQL----------------LTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNG  629 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----------------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~  629 (1102)
                              ..|+++|.|..|.+||+....-                -+.+-.|.+...+..+.|++.- .+|++.+.||.
T Consensus       361 --------s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  361 --------SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             --------ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence                    4588889999999999853221                0112224444568889999853 45666666654


Q ss_pred             EEEE
Q 001311          630 IKIL  633 (1102)
Q Consensus       630 i~iw  633 (1102)
                       .||
T Consensus       433 -nVf  435 (440)
T KOG0302|consen  433 -NVF  435 (440)
T ss_pred             -eEE
Confidence             444

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=2.7e-17  Score=192.06  Aligned_cols=371  Identities=25%  Similarity=0.417  Sum_probs=269.9

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe-eEEeeeeeeeccCCCCccccccccCCCC-CCeEEEEE-c
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIW-S  417 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s  417 (1102)
                      ....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. ....                   +.++. ..+..+.+ +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  119 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS  119 (466)
T ss_pred             eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence            35569999999999999996 8888899999999998876 3321                   33322 47777777 8


Q ss_pred             cCCC-eEEEEEC-CCeEEEEEccC-CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCeeeEEe
Q 001311          418 PDGS-LFGVAYS-RHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIF  493 (1102)
Q Consensus       418 pdg~-~las~~~-d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~vWd~~~~~~~~~~  493 (1102)
                      +++. +++..+. |+.+.+|+..+ .....   .+..|...|..++|+|++.  .+++++. |+.+++|++..+..+..+
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL  194 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence            8888 5555444 99999999987 43333   4788999999999999999  6777775 999999999999999999


Q ss_pred             ecCCCCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311          494 EGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  571 (1102)
Q Consensus       494 ~~h~~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  571 (1102)
                      .+|...|.++.|.  +++. .+++++.|+.|++||...+.... .+..+.... .                     ..|+
T Consensus       195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~---------------------~~~~  250 (466)
T COG2319         195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-V---------------------SSFS  250 (466)
T ss_pred             ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-e---------------------EeEC
Confidence            9999999999987  5555 55666999999999877444433 233333221 1                     1556


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCcce-EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccc
Q 001311          572 TTKNRFLAAGDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  650 (1102)
Q Consensus       572 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  650 (1102)
                      +++..+++++.|+.+++|+...... +..+..+  ...+.++.|.|++..+++++.|+.+.+|+..+.. ......    
T Consensus       251 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~----  323 (466)
T COG2319         251 PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK-LLSSLT----  323 (466)
T ss_pred             CCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc-eEEEee----
Confidence            6666788999999999999987665 4444333  4578899999988888889989889999765541 111000    


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311          651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  730 (1102)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~  730 (1102)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (466)
T COG2319         324 --------------------------------------------------------------------------------  323 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311          731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  810 (1102)
Q Consensus       731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~  810 (1102)
                          ...                                                                   |...+.
T Consensus       324 ----~~~-------------------------------------------------------------------~~~~~~  332 (466)
T COG2319         324 ----LKG-------------------------------------------------------------------HEGPVS  332 (466)
T ss_pred             ----ecc-------------------------------------------------------------------cCCceE
Confidence                000                                                                   222344


Q ss_pred             EEEEecCCCeEEEE-e-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEE-EeCCCcEEEEEeecceeeeeec
Q 001311          811 CFALSKNDSYVMSA-S-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       811 ~l~~s~d~~~las~-s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~dg~v~vwd~~~~~~~~~l~  887 (1102)
                      .+.+.+++..++.+ . |+.+.+|+............... +..+.+.+ + ..+.. +..++.+.+|+...........
T Consensus       333 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (466)
T COG2319         333 SLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLD  409 (466)
T ss_pred             EEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeecc
Confidence            44442222333433 3 66677777776652222322222 88899988 6 55554 8899999999999888777766


Q ss_pred             cccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311          888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                      .+...+....+++++..+++++.++.+++|+...
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         410 GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            5547788999999999999999999999999877

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.85  E-value=3.1e-20  Score=190.08  Aligned_cols=266  Identities=12%  Similarity=0.139  Sum_probs=191.3

Q ss_pred             CeeEEEEecC-------CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCC---ccccccccCCCCCCeEEEEEc
Q 001311          348 SPMSMDFHPV-------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS---MPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       348 ~v~~v~~spd-------g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      ..-|++|...       |+| +|.|+.|..|.|||+.-...+. -.+.+-.+....   .........+|++.|..++|+
T Consensus       175 fPLC~ewld~~~~~~~~gNy-vAiGtmdp~IeIWDLDI~d~v~-P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n  252 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNY-VAIGTMDPEIEIWDLDIVDAVL-PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN  252 (463)
T ss_pred             cchhhhhhhcCCCCCCCcce-EEEeccCceeEEeccccccccc-cceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence            4466666432       565 9999999999999985321111 000000000000   001112345899999999999


Q ss_pred             cC-CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC
Q 001311          418 PD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  496 (1102)
Q Consensus       418 pd-g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h  496 (1102)
                      .+ ...||+||.|.+|++||+.+|++..   ++..|.+.|.++.|.|.... +|++|+.|++|.+.|.+........-..
T Consensus       253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~  328 (463)
T KOG0270|consen  253 RNFRNVLASGSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKF  328 (463)
T ss_pred             cccceeEEecCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEe
Confidence            84 6689999999999999999999765   46789999999999999887 8999999999999999954333222124


Q ss_pred             CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311          497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  575 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  575 (1102)
                      .+.|..+.|.+... ..++++..||+|+-+|++.. +++.++..|...|.+++++..-.                    +
T Consensus       329 ~g~VEkv~w~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p--------------------~  387 (463)
T KOG0270|consen  329 DGEVEKVAWDPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP--------------------G  387 (463)
T ss_pred             ccceEEEEecCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC--------------------c
Confidence            56788899976554 57888899999999999987 67778888988888888877654                    5


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCCcc
Q 001311          576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                      ++++++.|+.|++|++............-..+...|.++.|+- .+++.|+..+.+++||+.+...
T Consensus       388 ~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~  453 (463)
T KOG0270|consen  388 LLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP  453 (463)
T ss_pred             ceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence            6889999999999998754432222111112235567777754 4677788888899999987733

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.84  E-value=1.1e-19  Score=178.64  Aligned_cols=300  Identities=15%  Similarity=0.215  Sum_probs=204.2

Q ss_pred             cccccceEEEEEcc----CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeE
Q 001311          736 NLRATKISRLIFTN----SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  811 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~----~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~  811 (1102)
                      ..|..+|..++|.+    +...+++......+.+|+.....                    +..+........+......
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~--------------------~ir~lq~y~D~d~~Esfyt   94 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG--------------------GIRLLQSYADEDHDESFYT   94 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc--------------------ceeeeeeccCCCCCcceEE
Confidence            34778888898874    22234444444467777653211                    1111111112236666777


Q ss_pred             EEEecCC----CeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311          812 FALSKND----SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  886 (1102)
Q Consensus       812 l~~s~d~----~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l  886 (1102)
                      ++|+-|-    -++|+++ -|.|+|.|+.++++...+.+|...|+.+.|.|++.++|++++.|..|++|++++..++..+
T Consensus        95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf  174 (385)
T KOG1034|consen   95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF  174 (385)
T ss_pred             EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence            7777543    3677776 7999999999999999999999999999999987899999999999999999999999887


Q ss_pred             ---ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccccee-------------eeecCCCCCC-------CCCCC
Q 001311          887 ---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR-------------FLQIPTGRTP-------TAQSD  943 (1102)
Q Consensus       887 ---~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~-------------~~~~~~~~~~-------~~~~v  943 (1102)
                         .+|.+.|.++.|+.+|.+++++|.|.+|++|++...+.....             +......|.+       ....|
T Consensus       175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV  254 (385)
T KOG1034|consen  175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV  254 (385)
T ss_pred             cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence               579999999999999999999999999999999853321100             0000001110       00122


Q ss_pred             cEEEEccCCcEEEE-EeCCeEEEEEc-CCceEe-------------eeeccCCCCCCeeEEE--EcCCCcEEEEEeCCCe
Q 001311          944 TRVQFHQDQIHFLV-VHETQLAIFET-TKLECV-------------KQWVPRESSAPITHAT--FSCDSQLVYACFLDAT 1006 (1102)
Q Consensus       944 ~~~~~spdg~~l~~-~~d~~i~iwd~-~~~~~~-------------~~~~~~~h~~~v~~l~--~spd~~~l~s~s~Dg~ 1006 (1102)
                      .++.|-  |.++.+ +.++.|..|.. +-.+.+             ..+..  ....|+-+.  |.|-+++||.|...|.
T Consensus       255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~--~~c~iWfirf~~d~~~~~la~gnq~g~  330 (385)
T KOG1034|consen  255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDY--PMCDIWFIRFAFDPWQKMLALGNQSGK  330 (385)
T ss_pred             HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEecc--CccceEEEEEeecHHHHHHhhccCCCc
Confidence            222221  567777 78889999987 222221             11211  133455554  4566889999999999


Q ss_pred             EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311         1007 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1007 I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      |++||++..+....-.    +.+...+..|.  ..+|+. |+.+|+..++|++|.-||.-
T Consensus       331 v~vwdL~~~ep~~~tt----l~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  331 VYVWDLDNNEPPKCTT----LTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             EEEEECCCCCCccCce----EEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEee
Confidence            9999999887742111    11111223344  788988 78999999999999999864

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=4.7e-20  Score=200.97  Aligned_cols=270  Identities=12%  Similarity=0.192  Sum_probs=197.1

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG  424 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la  424 (1102)
                      .....+|...++-..+++.|-  ....|+.+.......  .+.+....          -..-...+..+.|+. +.++||
T Consensus        39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~~--~~~~~~k~----------kqn~~~S~~DVkW~~~~~NlIA  104 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFSE--KCNHRFKT----------KQNKFYSAADVKWGQLYSNLIA  104 (839)
T ss_pred             ccccceEeecCCcceeEEecc--cceeeEeeCcccCCc--ceeeeccc----------ccceeeehhhcccccchhhhhe
Confidence            456678888888776444443  456666664432111  01110000          001112455677876 788999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  504 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~  504 (1102)
                      +++..|.|.+||+.....-+....+..|+..|+++.|++-... +|++||.||+|++||++..+-..++.+....|..|.
T Consensus       105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~  183 (839)
T KOG0269|consen  105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK  183 (839)
T ss_pred             eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence            9999999999999873222333368899999999999998887 899999999999999999999999999999999999


Q ss_pred             eeecCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC
Q 001311          505 PHHKENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  583 (1102)
Q Consensus       505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  583 (1102)
                      |++.. +..++++...|.+++||++... ....+..|.+.|.++.|+|                     ++.+|++||.|
T Consensus       184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhP---------------------nr~~lATGGRD  241 (839)
T KOG0269|consen  184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHP---------------------NREWLATGGRD  241 (839)
T ss_pred             eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecC---------------------CCceeeecCCC
Confidence            98765 5799999999999999998754 4456666666555555555                     45689999999


Q ss_pred             CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEE--CCCcEEEEEccCCccceeeccccccccc
Q 001311          584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDGIRLLRTFENLAYDAS  653 (1102)
Q Consensus       584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~  653 (1102)
                      +.|+|||+.+++.......+ ....+.++.|-|+.. .|++++  .|-.|+|||++...-+...+..|...+.
T Consensus       242 K~vkiWd~t~~~~~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt  313 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVT  313 (839)
T ss_pred             ccEEEEeccCCCccceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCcccc
Confidence            99999999866543322222 134688999999655 455554  3778999999998888888888876544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=5.3e-19  Score=182.55  Aligned_cols=293  Identities=12%  Similarity=0.178  Sum_probs=213.5

Q ss_pred             cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceE-EEeecCceEEeeeccccccCCCCcccccc
Q 001311          705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASV  783 (1102)
Q Consensus       705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  783 (1102)
                      +..++....+++||+.............     ....+.++.|......+ +..+.|..+++|.-..             
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t-----~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g-------------   66 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQT-----AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDG-------------   66 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCC-----CCCcceeeeccccceEEEeecCCceeEEEecccC-------------
Confidence            3344555789999998766555444332     23348889998777522 3334578899886421             


Q ss_pred             cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcE
Q 001311          784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  862 (1102)
Q Consensus       784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~  862 (1102)
                             .++.+......   ....-.|++......|+++|+ .+.|+|||++...+.+.+++|...|+++.+.- ...+
T Consensus        67 -------~~~~Vp~~~k~---~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~Dey  135 (673)
T KOG4378|consen   67 -------KTPEVPRVRKL---TGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEY  135 (673)
T ss_pred             -------CCCccceeecc---ccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-Ccce
Confidence                   11111111111   122445555556668999998 89999999998777888999999999999998 7889


Q ss_pred             EEEEeCCCcEEEEEeecceeeeeeccccc-cceeEEEecCCCE-EEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCC
Q 001311          863 IAIGMDDSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  940 (1102)
Q Consensus       863 lasg~~dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  940 (1102)
                      ||+++..|.|.|..+.++.....|...++ .|.-+.|++..+. |.+++.+|.|.+||+.+...    .......|.   
T Consensus       136 iAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp----~~~~~~~Hs---  208 (673)
T KOG4378|consen  136 IASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSP----IFHASEAHS---  208 (673)
T ss_pred             eEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCc----ccchhhhcc---
Confidence            99999999999999999887777765434 4558899998765 56789999999999987443    233344444   


Q ss_pred             CCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce-e
Q 001311          941 QSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK-L 1017 (1102)
Q Consensus       941 ~~v~~~~~spdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~-~ 1017 (1102)
                      .+...++|+|....|++  |.|..|.+||+...+....+.+   ..+...++|+++|.+|+.|+..|.|..||+...+ .
T Consensus       209 AP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  209 APCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             CCcCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCCCC
Confidence            37789999998776665  6999999999987776666654   5689999999999999999999999999997654 4


Q ss_pred             EEEeCCCcccCCCCCCCcccceEEEecCC
Q 001311         1018 RCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus      1018 ~~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
                      +..+.       .|... |.  +++|-|.
T Consensus       286 v~v~s-------ah~~s-Vt--~vafq~s  304 (673)
T KOG4378|consen  286 VAVRS-------AHDAS-VT--RVAFQPS  304 (673)
T ss_pred             ceEee-------ecccc-ee--EEEeeec
Confidence            44433       33344 55  7888873

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=1.3e-19  Score=178.12  Aligned_cols=259  Identities=19%  Similarity=0.240  Sum_probs=194.5

Q ss_pred             CCCCeeEEEEecC---CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC-C
Q 001311          345 QGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-G  420 (1102)
Q Consensus       345 h~~~v~~v~~spd---g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-g  420 (1102)
                      |...-..++|+-|   |.-++|.|+.-|.|+|-|+.+++...                   .+.+|.+.|+.+.|.|+ .
T Consensus        88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~-------------------~~~ghG~sINeik~~p~~~  148 (385)
T KOG1034|consen   88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK-------------------NYRGHGGSINEIKFHPDRP  148 (385)
T ss_pred             CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc-------------------ceeccCccchhhhcCCCCC
Confidence            6667778888764   45578888899999999999988776                   38899999999999995 5


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee----------
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----------  490 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~----------  490 (1102)
                      ++|+++|.|.+|++|++++..++..+.-+.||.+.|.++.|+.+|.  +++++|.|.++++|++...+..          
T Consensus       149 qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd--~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~  226 (385)
T KOG1034|consen  149 QLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD--RIASCGMDHSLKLWRLNVKEFKNKLELSITYS  226 (385)
T ss_pred             cEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC--eeeccCCcceEEEEecChhHHhhhhhhhcccC
Confidence            7899999999999999999999988778889999999999999999  8999999999999999843110          


Q ss_pred             ---------------E---EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcC-CCCCeeeecCCCCeeeEEEEcc
Q 001311          491 ---------------Y---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSA  551 (1102)
Q Consensus       491 ---------------~---~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~  551 (1102)
                                     -   +-.-|...|.|+.|..    +++++-|.++.|..|..- -.+.......+....+-+.-  
T Consensus       227 ~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g----d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~--  300 (385)
T KOG1034|consen  227 PNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG----DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGE--  300 (385)
T ss_pred             CCCccCcCCccccccccccccccccchHHHHHHHh----hheeecccCceEEEEecchhhhhhhccCCCccceeeeeE--
Confidence                           0   1124677777777632    589999999999999762 22221111111111110000  


Q ss_pred             CCceeeeccccCceeE--EEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311          552 DGTRTYQGFRKRSLGV--VQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDADGGLPASPRIRFNKDGCLLAVSTND  627 (1102)
Q Consensus       552 ~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  627 (1102)
                            .......++-  .++++-++.|+.|...|.|++||++...+  ..++........|...+|+.|+..|+...+|
T Consensus       301 ------~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd  374 (385)
T KOG1034|consen  301 ------FDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDD  374 (385)
T ss_pred             ------eccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCC
Confidence                  0001113333  45567778899999999999999987665  2334434445578899999999999999999


Q ss_pred             CcEEEEEcc
Q 001311          628 NGIKILATS  636 (1102)
Q Consensus       628 g~i~iwd~~  636 (1102)
                      ++|.-||..
T Consensus       375 ~~Vwrwdrv  383 (385)
T KOG1034|consen  375 GTVWRWDRV  383 (385)
T ss_pred             CcEEEEEee
Confidence            999999854

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.6e-16  Score=185.48  Aligned_cols=368  Identities=22%  Similarity=0.390  Sum_probs=269.0

Q ss_pred             eeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEeecCCC-CeEEEeeeecCCcc-EEEEEeC-CCeEE
Q 001311          449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGHEA-PVYSVCPHHKENIQ-FIFSTAL-DGKIK  524 (1102)
Q Consensus       449 l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~~h~~-~v~~v~~~~~~~~~-~l~s~s~-dg~i~  524 (1102)
                      +..|...|.++.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. +++..+. |+.+.
T Consensus        61 ~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          61 LRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             eeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccEE
Confidence            567999999999999999  78888899999999998887 7777776443 77777765 55555 5555444 99999


Q ss_pred             EEEcCC-CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC-CCeEEEEECCCcceEEEEcC
Q 001311          525 AWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       525 ~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~  602 (1102)
                      +|+... ......+..+...+..+.|++++                     ..+++++. |+.+++|+...+..+..+..
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDG---------------------KLLASGSSLDGTIKLWDLRTGKPLSTLAG  196 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCC---------------------CEEEecCCCCCceEEEEcCCCceEEeecc
Confidence            999987 55555666666666666655555                     45777775 99999999998888888876


Q ss_pred             CCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCCcccee-ecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311          603 DGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGIRLLR-TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  680 (1102)
Q Consensus       603 ~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1102)
                      +  ...+.+++|+|++. .+++++.|+.|++||...+ .... .+.+                                 
T Consensus       197 ~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~-~~~~~~~~~---------------------------------  240 (466)
T COG2319         197 H--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG-KLLRSTLSG---------------------------------  240 (466)
T ss_pred             C--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCC-cEEeeecCC---------------------------------
Confidence            4  44799999999998 5555589999999975533 1111 0000                                 


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311          681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  760 (1102)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d  760 (1102)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (466)
T COG2319         241 --------------------------------------------------------------------------------  240 (466)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce
Q 001311          761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  839 (1102)
Q Consensus       761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~  839 (1102)
                                                                  |.... ...|++++.++++++ |+.+++|+......
T Consensus       241 --------------------------------------------~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  275 (466)
T COG2319         241 --------------------------------------------HSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS  275 (466)
T ss_pred             --------------------------------------------CCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence                                                        22221 115556665555555 67777777765543


Q ss_pred             -eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec--cccccceeEEEecCCCEEEEE-cCCCcEE
Q 001311          840 -MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSS-GADSQLC  915 (1102)
Q Consensus       840 -~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~  915 (1102)
                       ...+.+|...+.++.|+| ++..+++++.|+.+.+||..+........  .|...+..+.|.+++..++.+ ..|+.+.
T Consensus       276 ~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  354 (466)
T COG2319         276 LLRTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIR  354 (466)
T ss_pred             EEEEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEE
Confidence             344456788999999999 77788889999999999988877666665  788889999994332566655 6889999


Q ss_pred             EEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC
Q 001311          916 VWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC  993 (1102)
Q Consensus       916 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp  993 (1102)
                      +|++....    ........     ..+..+.+++ ......  ..++.+.+|+.............  ...+....+++
T Consensus       355 ~~~~~~~~----~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  422 (466)
T COG2319         355 LWDLRTGK----PLKTLEGH-----SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH--TSRVTSLDFSP  422 (466)
T ss_pred             eeecCCCc----eeEEecCC-----ceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCC--CCcEEEEEECC
Confidence            99998854    11111111     1267888888 544443  47889999999998887766521  17899999999


Q ss_pred             CCcEEEEEeCCCeEEEEEcCC
Q 001311          994 DSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       994 d~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      ++..+++++.++.+++|+..+
T Consensus       423 ~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         423 DGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             CCcEEEEecCCCcEEEEeccC
Confidence            999999999999999999988

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=8.4e-19  Score=181.08  Aligned_cols=210  Identities=17%  Similarity=0.281  Sum_probs=167.9

Q ss_pred             CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCe
Q 001311          750 SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGK  828 (1102)
Q Consensus       750 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~  828 (1102)
                      ...+++++|..++++|||+.                       .+++.+.+.+  |...|+++.++-.+.|||+++ .|.
T Consensus        90 ~S~y~~sgG~~~~Vkiwdl~-----------------------~kl~hr~lkd--h~stvt~v~YN~~DeyiAsvs~gGd  144 (673)
T KOG4378|consen   90 QSLYEISGGQSGCVKIWDLR-----------------------AKLIHRFLKD--HQSTVTYVDYNNTDEYIASVSDGGD  144 (673)
T ss_pred             cceeeeccCcCceeeehhhH-----------------------HHHHhhhccC--CcceeEEEEecCCcceeEEeccCCc
Confidence            34778999999999999873                       2344444555  999999999999999999999 688


Q ss_pred             EEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-ccccccceeEEEecCC-CEE
Q 001311          829 ISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKRITGLAFSHAL-NVL  905 (1102)
Q Consensus       829 I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~V~~l~~s~d~-~~l  905 (1102)
                      |.|..+.++....+|....+ .|.-+.|+|....+|.+++++|.|.+||+.....+..+ ..|+.+...|+|+|.. .+|
T Consensus       145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~  224 (673)
T KOG4378|consen  145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALL  224 (673)
T ss_pred             EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceE
Confidence            99999999888777775534 46689999966678889999999999999876666554 6799999999999975 678


Q ss_pred             EEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE-eeeeccCCCC
Q 001311          906 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-VKQWVPRESS  983 (1102)
Q Consensus       906 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~-~~~~~~~~h~  983 (1102)
                      |+.|.|..|.+||+........    +...     .+...++|+++|.+|++| ..|.|..||++..+. +..+  +.|.
T Consensus       225 vsVG~Dkki~~yD~~s~~s~~~----l~y~-----~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~--sah~  293 (673)
T KOG4378|consen  225 VSVGYDKKINIYDIRSQASTDR----LTYS-----HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR--SAHD  293 (673)
T ss_pred             EEecccceEEEeecccccccce----eeec-----CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe--eecc
Confidence            8999999999999986433221    1112     367899999999999997 889999999986554 3333  3788


Q ss_pred             CCeeEEEEcCCC
Q 001311          984 APITHATFSCDS  995 (1102)
Q Consensus       984 ~~v~~l~~spd~  995 (1102)
                      ..|++++|-+..
T Consensus       294 ~sVt~vafq~s~  305 (673)
T KOG4378|consen  294 ASVTRVAFQPSP  305 (673)
T ss_pred             cceeEEEeeecc
Confidence            899999997654

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=9.3e-19  Score=179.82  Aligned_cols=316  Identities=12%  Similarity=0.152  Sum_probs=226.2

Q ss_pred             EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC----CCeeeecCCCCeeeEEEEccCCceee
Q 001311          482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL----GSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~----~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      .|+.+-....+.+-+.+.|++++|+|..+..++++|..-|.|-+||+.+.    .....+..|..+|.++.|+|...   
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~---  247 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANT---  247 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCCh---
Confidence            34444455556667889999999999998889999999999999999632    23445677777888888887765   


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                                       ..+++.+.||+|++-|++.+.....+........+.++.|+.+...++.+..-|.+.+||.++
T Consensus       248 -----------------s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~  310 (498)
T KOG4328|consen  248 -----------------SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRT  310 (498)
T ss_pred             -----------------hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeec
Confidence                             579999999999999998776444444323334567788888888888888888999999998


Q ss_pred             CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311          638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  717 (1102)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w  717 (1102)
                      +......+.-|...+...      ++.|.                                  ...++++++.|++.++|
T Consensus       311 ~~s~~~~~~lh~kKI~sv------~~NP~----------------------------------~p~~laT~s~D~T~kIW  350 (498)
T KOG4328|consen  311 DGSEYENLRLHKKKITSV------ALNPV----------------------------------CPWFLATASLDQTAKIW  350 (498)
T ss_pred             CCccchhhhhhhccccee------ecCCC----------------------------------CchheeecccCcceeee
Confidence            866566665555433322      22222                                  25678999999999999


Q ss_pred             ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311          718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  797 (1102)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  797 (1102)
                      |+......... .+.  ...|...|.++.|||.+-.|++.+.|..|+|||..-              +--|+...+....
T Consensus       351 D~R~l~~K~sp-~ls--t~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~--------------~sa~~~p~~~I~H  413 (498)
T KOG4328|consen  351 DLRQLRGKASP-FLS--TLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC--------------ISAKDEPLGTIPH  413 (498)
T ss_pred             ehhhhcCCCCc-cee--cccccceeeeeEEcCCCCceEeeccCCceEEeeccc--------------ccccCCccceeec
Confidence            99976654431 111  134899999999999988899999999999998620              0112222222211


Q ss_pred             cccCCCCCCC--CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCC-CeeE-EEEecCCCcEEEEEeCCCcE
Q 001311          798 NDVTDSNPEE--AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATF-LAFHPQDNNIIAIGMDDSSI  872 (1102)
Q Consensus       798 ~~~~~~~~~~--~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~-~i~~-l~~sp~d~~~lasg~~dg~v  872 (1102)
                      .-.    +..  ...-.+|.|+..++++|. -..|-|+|-..++.+..+..... .|.+ ..|+|-+..++|-|+..|.|
T Consensus       414 n~~----t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki  489 (498)
T KOG4328|consen  414 NNR----TGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKI  489 (498)
T ss_pred             cCc----ccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceE
Confidence            100    111  133467999999999998 67899999998888877654433 4554 47999444467767778899


Q ss_pred             EEEEee
Q 001311          873 QIYNVR  878 (1102)
Q Consensus       873 ~vwd~~  878 (1102)
                      +||--+
T Consensus       490 ~vft~k  495 (498)
T KOG4328|consen  490 YVFTNK  495 (498)
T ss_pred             EEEecC
Confidence            998644

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=5.7e-19  Score=176.79  Aligned_cols=219  Identities=21%  Similarity=0.335  Sum_probs=162.6

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      +...-+|...=.+++|||--.--|++|..-+.|++|...+|.-...                ..-+.+|+..|-.|+|||
T Consensus       204 l~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----------------~~Pf~gH~~SVEDLqWSp  267 (440)
T KOG0302|consen  204 LFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----------------QRPFTGHTKSVEDLQWSP  267 (440)
T ss_pred             eEEecccCccceeeecccccccccccCccccceEeeeeccCceeec----------------CccccccccchhhhccCC
Confidence            3344459999999999993322388998889999999988754321                124678999999999999


Q ss_pred             -CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC---CeeeEEee
Q 001311          419 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIFE  494 (1102)
Q Consensus       419 -dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~---~~~~~~~~  494 (1102)
                       ....||+||.||+|+|||++.+.....+. .+.|.+.|+.|.|+..-.  +|++|+.||+++|||++.   ++++..|+
T Consensus       268 tE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk  344 (440)
T KOG0302|consen  268 TEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFK  344 (440)
T ss_pred             ccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEE
Confidence             56789999999999999999984433332 478999999999999888  899999999999999984   67889999


Q ss_pred             cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeee-----ecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVD-----YEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                      -|..+|+++.|++..+ ..|++++.|.+|.+||+......-.     ..+-..-...+-|-..|        ...+.-+.
T Consensus       345 ~Hk~pItsieW~p~e~-s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqG--------Qke~Kevh  415 (440)
T KOG0302|consen  345 YHKAPITSIEWHPHED-SVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQG--------QKEVKEVH  415 (440)
T ss_pred             eccCCeeEEEeccccC-ceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecc--------hhHhhhhe
Confidence            9999999999998766 5788889999999999975433111     01100111122222222        23555666


Q ss_pred             EcCCC-CEEEEEeCCCe
Q 001311          570 FDTTK-NRFLAAGDDFS  585 (1102)
Q Consensus       570 ~~~~~-~~l~~~~~dg~  585 (1102)
                      |+++- .++++.+.||.
T Consensus       416 WH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  416 WHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             eccCCCCeEEEecccce
Confidence            76654 35677777763

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.4e-18  Score=181.64  Aligned_cols=168  Identities=20%  Similarity=0.265  Sum_probs=129.9

Q ss_pred             EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311          447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  525 (1102)
Q Consensus       447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~  525 (1102)
                      .+|.||++.|+|+.|+.||.  +|++|++|-.+.|||.-..+.++.+ .||...|.++.|.|..+..++++|..|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            36889999999999999999  8999999999999999988888877 68999999999999888899999999999999


Q ss_pred             EEcCCCCC----------eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q 001311          526 WLYDNLGS----------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  595 (1102)
Q Consensus       526 wd~~~~~~----------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  595 (1102)
                      +|+...+.          ...+.-|...|..++..|++.                    +.+.++++||+|+-+|++...
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~P--------------------htfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGP--------------------HTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCC--------------------ceEEEecCCcceeeecccCCc
Confidence            99985222          112223333444444444433                    678999999999999998632


Q ss_pred             eE-EE-------EcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEcc
Q 001311          596 LL-TS-------IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       596 ~~-~~-------~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~  636 (1102)
                      .- ..       ...........|+.++| +..+|++|+.|-..++||.+
T Consensus       182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence            11 00       01111223467899999 67789999999999999964

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.81  E-value=1e-18  Score=179.10  Aligned_cols=196  Identities=16%  Similarity=0.235  Sum_probs=154.6

Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeEEE------------------eeccccCEEEEEEcCCCCeeEEEEecCCCcEE
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLE------------------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK  480 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~------------------l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~  480 (1102)
                      -|+|+|.|+.|..|.|||+.--..+.+...                  ..+|++.|.+++|+..-+. +|+|||.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence            478999999999999999863322222222                  2379999999999998887 899999999999


Q ss_pred             EEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311          481 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  560 (1102)
Q Consensus       481 vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  560 (1102)
                      +||+.+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+........-.-.+.|..++|.+...      
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se------  342 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE------  342 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc------
Confidence            99999999999999999999999998654 47999999999999999985322211111122344444444333      


Q ss_pred             ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc-ceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCC
Q 001311          561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-QLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                                    ..++++..||+|+-+|++.. +++.++..|..  .|.++++++ ...++++++.|+.|++|++...
T Consensus       343 --------------~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~  406 (463)
T KOG0270|consen  343 --------------NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKVVKLWKFDVD  406 (463)
T ss_pred             --------------eeEEEecCCceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccceEEEEeecCC
Confidence                          45778889999999999875 88999988866  899999998 4567899999999999997544

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=1.9e-17  Score=162.53  Aligned_cols=227  Identities=14%  Similarity=0.128  Sum_probs=170.1

Q ss_pred             cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC---CCeeEEEEecCCCeEEEEe
Q 001311          749 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE---EAVPCFALSKNDSYVMSAS  825 (1102)
Q Consensus       749 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~---~~i~~l~~s~d~~~las~s  825 (1102)
                      |+..++++.+.+.-|.+||.-+++......                       ...|.   ....+++|+|||..|.+|.
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~-----------------------~ydh~de~taAhsL~Fs~DGeqlfaGy  177 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYR-----------------------AYDHQDEYTAAHSLQFSPDGEQLFAGY  177 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchh-----------------------hhhhHHhhhhheeEEecCCCCeEeecc
Confidence            677788888889999998864332211110                       01122   2356899999999999999


Q ss_pred             CCeEEEEEc-CCCcee--ee-e----cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEE
Q 001311          826 GGKISLFNM-MTFKTM--AT-F----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA  897 (1102)
Q Consensus       826 dg~I~iwd~-~~~~~~--~~-~----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~  897 (1102)
                      ...|++||+ +.|..-  .. +    .+..+-|.+++|+|.+.+.+|+|+....+-||.-..+..+..+-+|.+.|+.++
T Consensus       178 krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~  257 (406)
T KOG2919|consen  178 KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQ  257 (406)
T ss_pred             cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEE
Confidence            999999999 343321  11 1    223567899999998888999999999999999888999999999999999999


Q ss_pred             EecCCCEEEEEcC-CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC-ceEe
Q 001311          898 FSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK-LECV  974 (1102)
Q Consensus       898 ~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~-~~~~  974 (1102)
                      |.+||+.|.+|+. |-.|.+||+.....    ++-.+..|....+.-.-....|+|++|+++ .+|.|++||+++ +..+
T Consensus       258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~----pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~  333 (406)
T KOG2919|consen  258 WCEDGNKLFSGARKDDKILCWDIRYSRD----PVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEV  333 (406)
T ss_pred             eccCcCeecccccCCCeEEEEeehhccc----hhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcc
Confidence            9999999999985 67899999987443    222233333211122234556899999997 999999999998 6655


Q ss_pred             eeeccCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311          975 KQWVPRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus       975 ~~~~~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
                      ..+.  .|+..++.+++.|-=.++|+++..
T Consensus       334 sv~~--~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  334 SVTG--NYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cccc--cccccccceecCcccceeeeccCc
Confidence            5544  678999999999997788887754

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=5.2e-18  Score=161.89  Aligned_cols=308  Identities=14%  Similarity=0.203  Sum_probs=196.9

Q ss_pred             eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec-CCCCeeeEEEEccCCceeeeccccCcee
Q 001311          488 AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       488 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                      .+...+++|.+.|++++|.  .+ .+|++|..-|.|++|++.+......+. .+...|+.+...|++.            
T Consensus         5 dP~fvLRp~~~~v~s~~fq--a~-~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~------------   69 (323)
T KOG0322|consen    5 DPFFVLRPHSSSVTSVLFQ--AN-ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS------------   69 (323)
T ss_pred             CCeeEeccccchheehhhc--cc-hhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc------------
Confidence            3456778999999999984  33 469999999999999999988777776 4455666666666544            


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC-cEEEEEccCCccceeec
Q 001311          567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTF  645 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~  645 (1102)
                                +.+-+.|+.+.+|++..+..+..-.     ..++++.|.+..  +...+... .+-.++-+.... .+..
T Consensus        70 ----------l~tqgRd~~L~lw~ia~s~~i~i~S-----i~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~  131 (323)
T KOG0322|consen   70 ----------LDTQGRDPLLILWTIAYSAFISIHS-----IVVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQ  131 (323)
T ss_pred             ----------hhhcCCCceEEEEEccCcceEEEee-----eeccccccccce--eccCCCcchhheecCCcccch-hhhh
Confidence                      8888999999999998765543322     124444444321  11111110 111111111100 0000


Q ss_pred             ccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCC
Q 001311          646 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEP  725 (1102)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~  725 (1102)
                      .                                                             ++....+++-+-.     
T Consensus       132 D-------------------------------------------------------------~g~~tqv~i~dd~-----  145 (323)
T KOG0322|consen  132 D-------------------------------------------------------------GGDTTQVQIADDS-----  145 (323)
T ss_pred             c-------------------------------------------------------------cCccceeEccCch-----
Confidence            0                                                             0000011111100     


Q ss_pred             CccccccCCCcccccceEEEEEcc-CCc--eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          726 NQCRSLRLPENLRATKISRLIFTN-SGN--AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       726 ~~~~~~~~~~~~~~~~i~~~~~s~-~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                               .....+.+.+..+.. +++  .+++|.++|.+.+||++.++..             .+...-..+....  
T Consensus       146 ---------~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-------------~~~~~~~kv~~~~--  201 (323)
T KOG0322|consen  146 ---------ERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-------------IQLPQSSKVESPN--  201 (323)
T ss_pred             ---------hccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCcee-------------eccccccccccch--
Confidence                     011233444443221 222  3566677899999998765221             1111111111112  


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC--Cce--eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                      ..|..+|.++.+.+.-..=++|+ +..+..|+++.  +.+  ..++......|..+.+-| |++++|+++.|+.||||+.
T Consensus       202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVysw  280 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSW  280 (323)
T ss_pred             hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEe
Confidence            23889999999987666666666 77788888763  222  222333355688999999 9999999999999999999


Q ss_pred             ecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          878 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       878 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      ++...+..++-|++.|.+++|+||...+|.++.|++|.+|++
T Consensus       281 rtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  281 RTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            999999999999999999999999999999999999999986

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=7.7e-19  Score=200.92  Aligned_cols=256  Identities=13%  Similarity=0.164  Sum_probs=198.3

Q ss_pred             ccCCCCeeEEEEecCCCe---EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          343 LNQGSSPMSMDFHPVQQT---LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~---llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      +.-..+-+.++|.+.|..   |+|.|..||.|.+||...-  +...          . .........|.+.|..+.|++.
T Consensus        61 ~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~----------~-~~~la~~~~h~G~V~gLDfN~~  127 (1049)
T KOG0307|consen   61 LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANA----------S-EEVLATKSKHTGPVLGLDFNPF  127 (1049)
T ss_pred             ccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCc----------c-hHHHhhhcccCCceeeeecccc
Confidence            334567789999998876   6999999999999998652  1100          0 0011246789999999999996


Q ss_pred             CC-eEEEEECCCeEEEEEccCCceeeeEEEe--eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC
Q 001311          420 GS-LFGVAYSRHIVQIYSYHGGDEVRQHLEI--DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  496 (1102)
Q Consensus       420 g~-~las~~~d~~v~vwd~~~~~~~~~~~~l--~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h  496 (1102)
                      +. +||+|+.||.|.|||+..-+.--   ..  ..-.+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..|
T Consensus       128 q~nlLASGa~~geI~iWDlnn~~tP~---~~~~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~  203 (1049)
T KOG0307|consen  128 QGNLLASGADDGEILIWDLNKPETPF---TPGSQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDT  203 (1049)
T ss_pred             CCceeeccCCCCcEEEeccCCcCCCC---CCCCCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccC
Confidence            55 99999999999999998744221   12  124568999999988777 7999999999999999999888777665


Q ss_pred             CC--CeEEEeeeecCCccEEEEEeCC-C--eEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEE
Q 001311          497 EA--PVYSVCPHHKENIQFIFSTALD-G--KIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  570 (1102)
Q Consensus       497 ~~--~v~~v~~~~~~~~~~l~s~s~d-g--~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  570 (1102)
                      .+  .+..+.|+++... .|++++.| +  .|.+||++... ....+..|...|.++.|++.+.                
T Consensus       204 ~~~~~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~----------------  266 (1049)
T KOG0307|consen  204 PGRMHCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP----------------  266 (1049)
T ss_pred             CCccceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc----------------
Confidence            54  4677899987764 45555544 3  69999998654 4455667777777777776654                


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCC
Q 001311          571 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       571 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~  638 (1102)
                          .++++++.|+.|.+||.++++.+..+...+  .++..+.|.|.. ..+++.+.||.|.|+.+...
T Consensus       267 ----~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~  329 (1049)
T KOG0307|consen  267 ----RLLLSSGKDNRIICWNPNTGEVLGELPAQG--NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT  329 (1049)
T ss_pred             ----hhhhcccCCCCeeEecCCCceEeeecCCCC--cceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence                578999999999999999999999998643  489999999955 48889999999999998765

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.79  E-value=1.6e-17  Score=163.16  Aligned_cols=406  Identities=14%  Similarity=0.112  Sum_probs=239.1

Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECC
Q 001311          351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSR  429 (1102)
Q Consensus       351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d  429 (1102)
                      -.+|||+|+| +|+.+. ..+.|-|.++-+..+.                    -.--+.|..+.|+.|..++..+ +.|
T Consensus        13 ~c~fSp~g~y-iAs~~~-yrlviRd~~tlq~~ql--------------------f~cldki~yieW~ads~~ilC~~yk~   70 (447)
T KOG4497|consen   13 FCSFSPCGNY-IASLSR-YRLVIRDSETLQLHQL--------------------FLCLDKIVYIEWKADSCHILCVAYKD   70 (447)
T ss_pred             ceeECCCCCe-eeeeee-eEEEEeccchhhHHHH--------------------HHHHHHhhheeeeccceeeeeeeecc
Confidence            3679999997 887765 4888889887655431                    1113578889999998887764 778


Q ss_pred             CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC
Q 001311          430 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE  509 (1102)
Q Consensus       430 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~  509 (1102)
                      +.|.+|++...+-..   .+.....++.+++|||||++ +|.+...|-.|.||.+.+.+....-. -...+..++|  .+
T Consensus        71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~~-pK~~~kg~~f--~~  143 (447)
T KOG4497|consen   71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLPH-PKTNVKGYAF--HP  143 (447)
T ss_pred             ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEecc-cccCceeEEE--CC
Confidence            999999998876444   35566789999999999987 78888999999999999887754332 2233466776  46


Q ss_pred             CccEEEEEeCCCeEEEEEcC---CCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeE
Q 001311          510 NIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  586 (1102)
Q Consensus       510 ~~~~l~s~s~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  586 (1102)
                      +|++.+.++.-...-...+.   .-..+..+....-..+                     .+.|+|||+.+++       
T Consensus       144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt---------------------gieWsPdg~~laV-------  195 (447)
T KOG4497|consen  144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT---------------------GIEWSPDGNWLAV-------  195 (447)
T ss_pred             CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc---------------------CceECCCCcEEEE-------
Confidence            66777776642111111110   0011112222222333                     3455555555554       


Q ss_pred             EEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccc
Q 001311          587 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  666 (1102)
Q Consensus       587 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1102)
                        ||---...+..+..   .-.+..++|+|.+++|++|+.|+.+|+.+--+- +.+..+- |...               
T Consensus       196 --wd~~Leykv~aYe~---~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tW-k~f~efl-hl~s---------------  253 (447)
T KOG4497|consen  196 --WDNVLEYKVYAYER---GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTW-KPFGEFL-HLCS---------------  253 (447)
T ss_pred             --ecchhhheeeeeee---ccceeEEEeccccceEEeeccchhhhhhceeee-eehhhhc-cchh---------------
Confidence              44222111222211   124778999999999999999999998765443 2221111 0000               


Q ss_pred             hhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc-cceEecccCCCCCccccccCCCcccccceEEE
Q 001311          667 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK-SKVWKLTELSEPNQCRSLRLPENLRATKISRL  745 (1102)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~  745 (1102)
                                                                -.|.+ +.++.-..     .         ...-...++
T Consensus       254 ------------------------------------------~~dp~~~~~~ke~~-----~---------~~ql~~~cL  277 (447)
T KOG4497|consen  254 ------------------------------------------YHDPTLHLLEKETF-----S---------IVQLLHHCL  277 (447)
T ss_pred             ------------------------------------------ccCchhhhhhhhhc-----c---------hhhhccccc
Confidence                                                      00000 00000000     0         000111233


Q ss_pred             EEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe
Q 001311          746 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  825 (1102)
Q Consensus       746 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s  825 (1102)
                      .|.|..-         ...+|.........     ...-+++   ...+... +.  .+..-.+.-++|++|..++++-.
T Consensus       278 sf~p~~~---------~a~~~~~se~~YE~-----~~~pv~~---~~lkp~t-D~--pnPk~g~g~lafs~Ds~y~aTrn  337 (447)
T KOG4497|consen  278 SFTPTDL---------EAHIWEESETIYEQ-----QMTPVKV---HKLKPPT-DF--PNPKCGAGKLAFSCDSTYAATRN  337 (447)
T ss_pred             ccCCCcc---------ccCccccchhhhhh-----hhcceee---ecccCCC-CC--CCcccccceeeecCCceEEeeec
Confidence            3443321         11111110000000     0000000   0000000 00  11344577799999999999987


Q ss_pred             C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCC
Q 001311          826 G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL  902 (1102)
Q Consensus       826 d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~  902 (1102)
                      |   +.+.+||++..+....+. ...+|.+..|+| ....|+.+.....+++|......++..- +..-.|..++|..+|
T Consensus       338 d~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~vP-~~GF~i~~l~W~~~g  414 (447)
T KOG4497|consen  338 DKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGVP-KKGFNIQKLQWLQPG  414 (447)
T ss_pred             CCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEecC-CCCceeeeEEecCCC
Confidence            6   569999998866554443 566799999999 7777777777778999997764444432 233679999999999


Q ss_pred             CEEEEEcCCCcE
Q 001311          903 NVLVSSGADSQL  914 (1102)
Q Consensus       903 ~~l~s~s~Dg~i  914 (1102)
                      ..++..+.|...
T Consensus       415 ~~i~l~~kDafc  426 (447)
T KOG4497|consen  415 EFIVLCGKDAFC  426 (447)
T ss_pred             cEEEEEcCCceE
Confidence            999999999743

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=3e-16  Score=163.96  Aligned_cols=499  Identities=14%  Similarity=0.173  Sum_probs=285.1

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc--cC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS--PD  419 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s--pd  419 (1102)
                      ...|...|.|+.|+.... ++.+ +.|..+.+|+-.+........+.  +      .+.  ....|   +....--  ..
T Consensus        10 k~r~~e~vc~v~w~~~ee-i~~~-~dDh~~~~~~~~~~~s~~~~~~p--~------df~--pt~~h---~~~rs~~~g~~   74 (737)
T KOG1524|consen   10 KNRNSEKVCCVDWSSNEE-IYFV-SDDHQIFKWSDVSRDSVEVAKLP--D------DFV--PTDMH---LGGRSSGGGKG   74 (737)
T ss_pred             ccccceeEEeecccccce-EEEe-ccCceEEEeecccchhhhhhhCC--c------ccC--Ccccc---ccccccCCCCC
Confidence            345778888999999887 3444 45566555554333222110000  0      000  00011   0000000  13


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      ...++.++.||.+.|-+-...  +.  .....|.+.|.+-.|+|||.  -|+|+|.||.|++|. ++|....++.....+
T Consensus        75 ~d~~~i~s~DGkf~il~k~~r--VE--~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   75 SDTLLICSNDGRFVILNKSAR--VE--RSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             cceEEEEcCCceEEEecccch--hh--hhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCce
Confidence            457888999999888775442  22  13678999999999999999  699999999999999 888877777778889


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      |.|++|.++.+ +.+++.+  +.+.+=-+.....+.....|.+-|.                     ++.|++..+.+++
T Consensus       148 v~c~~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL---------------------~~~W~~~s~lI~s  203 (737)
T KOG1524|consen  148 IRCARWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVL---------------------SLSWSTQSNIIAS  203 (737)
T ss_pred             eEEEEECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEE---------------------EeecCccccceee
Confidence            99999976654 4555544  4555555555555555566655444                     4555555568999


Q ss_pred             EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311          580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  659 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1102)
                      ||+|-..++||. .|..+..-..|.+  .|++++|.|+ +.++.++. +++|+=                          
T Consensus       204 gGED~kfKvWD~-~G~~Lf~S~~~ey--~ITSva~npd-~~~~v~S~-nt~R~~--------------------------  252 (737)
T KOG1524|consen  204 GGEDFRFKIWDA-QGANLFTSAAEEY--AITSVAFNPE-KDYLLWSY-NTARFS--------------------------  252 (737)
T ss_pred             cCCceeEEeecc-cCcccccCChhcc--ceeeeeeccc-cceeeeee-eeeeec--------------------------
Confidence            999999999996 5666666665655  7999999999 55555554 233310                          


Q ss_pred             CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccc
Q 001311          660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  739 (1102)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  739 (1102)
                                                                                                  ....
T Consensus       253 ----------------------------------------------------------------------------~p~~  256 (737)
T KOG1524|consen  253 ----------------------------------------------------------------------------SPRV  256 (737)
T ss_pred             ----------------------------------------------------------------------------CCCc
Confidence                                                                                        0134


Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeec-cccccCCCCccc--ccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKW-QRTERNSSGKAT--ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~--~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                      +.|..++||+||..+++++..|.+.+=-. +..-..-+.+..  ....+.+.|+.++..-..+     ....+....+  
T Consensus       257 GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE-----~p~rv~k~sL--  329 (737)
T KOG1524|consen  257 GSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILE-----FPQRVVKFSL--  329 (737)
T ss_pred             cceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhh-----Cccceeeeee--
Confidence            67889999999999999999887765322 111111111111  1123445555555442211     3444544443  


Q ss_pred             CCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee--cccc-ccc
Q 001311          817 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHS-KRI  893 (1102)
Q Consensus       817 d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l--~~h~-~~V  893 (1102)
                      .-.+|+++....|++|.-......-.+.+....+.-+.-+.  ..+++  .+.-+|.+|..+. +..-..  .+.. ...
T Consensus       330 ~Y~hLvvaTs~qvyiys~knwntpiiidgre~tr~lieq~e--k~fli--~dgsSi~lytyeg-R~~~np~~Pg~~~dlL  404 (737)
T KOG1524|consen  330 GYGHLVVATSLQVYIYSEKNWNTPIIIDGREDTRNLIEQGE--KYFLI--LDGSSIWLYTYEG-RLHLNPRYPGSQIDLL  404 (737)
T ss_pred             ceeEEEEEeccEEEEEecCCccCcEEEeccccchhHhhhhh--hheEE--ecCcEEEEEEecC-ceecCCCCCCcccccc
Confidence            34567777778899998877666555555444333222221  12232  2233566666542 222111  1110 000


Q ss_pred             --eeEEEecCCCEEEEE--cCCCcEEEEEc-CCCcccceeeeecCCCC-CCCCCCCcEEEEc----cCCcEEEE-EeCCe
Q 001311          894 --TGLAFSHALNVLVSS--GADSQLCVWSS-DGWEKQKNRFLQIPTGR-TPTAQSDTRVQFH----QDQIHFLV-VHETQ  962 (1102)
Q Consensus       894 --~~l~~s~d~~~l~s~--s~Dg~i~vwd~-~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s----pdg~~l~~-~~d~~  962 (1102)
                        ..+...  ...|+.-  .....+.+||. .+++.+.       +|+ ......|..++..    ++.+.++. -.++.
T Consensus       405 ~~rtlsLa--ndtLaird~ad~kvlhlFd~istgk~qg-------Dgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrd  475 (737)
T KOG1524|consen  405 TWRTLSLA--NDTLAIRDNADPKVLHLFDLISTGKRQG-------DGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRD  475 (737)
T ss_pred             cceeeecc--cceEEeecCCCCeeEEeccCCCCCcccC-------CccccchhhhHHHhHhhccCCCccceEEEEecCCc
Confidence              122222  2234432  22345678887 5544321       111 0111233333332    23344444 35555


Q ss_pred             EEEEEcCCceEe-eeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeE
Q 001311          963 LAIFETTKLECV-KQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus       963 i~iwd~~~~~~~-~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
                      ++|=.+++.... +.+..   ...|..++|+. -.-+++|-.|+.+.||-+.+...+
T Consensus       476 l~ItsvKrfgkee~I~Ki---GTmVhtLawnd-ttNiLcglqDt~fsVWy~pn~vyv  528 (737)
T KOG1524|consen  476 LFITSVKRFGKEEEIYKI---GTMVHTLAWND-TTNILCGLQDTCFSVWYYPNEVYV  528 (737)
T ss_pred             EEEEeehhcCchhhhhhh---hhhhhhhhhcc-ccceeeeeccceEEEEEcCCccee
Confidence            666555442211 11111   45788899984 445777889999999988765443

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.78  E-value=2.7e-17  Score=161.46  Aligned_cols=273  Identities=16%  Similarity=0.279  Sum_probs=189.3

Q ss_pred             EEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-------ee-----eEEee-cCCCCeEEEeee-----ecCCccEEEEE
Q 001311          456 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AK-----QYIFE-GHEAPVYSVCPH-----HKENIQFIFST  517 (1102)
Q Consensus       456 V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-------~~-----~~~~~-~h~~~v~~v~~~-----~~~~~~~l~s~  517 (1102)
                      ...+.|+|||.  .|++-+.|..+++|++...       ..     ..+++ .....|...+|-     ..++..++++.
T Consensus        52 ~kgckWSPDGS--ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~s  129 (406)
T KOG2919|consen   52 LKGCKWSPDGS--CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVS  129 (406)
T ss_pred             hccceeCCCCc--eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeec
Confidence            45688999999  7999999999999998521       10     11111 133456666764     24566789999


Q ss_pred             eCCCeEEEEEcCCCCCeeeecCCCC-----eeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC-
Q 001311          518 ALDGKIKAWLYDNLGSRVDYEAPGR-----WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-  591 (1102)
Q Consensus       518 s~dg~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-  591 (1102)
                      +.|.-|++||.-+++....+..-..     ...+++|+|||                     .+|++ +..+.|++||+ 
T Consensus       130 sr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG---------------------eqlfa-GykrcirvFdt~  187 (406)
T KOG2919|consen  130 SRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG---------------------EQLFA-GYKRCIRVFDTS  187 (406)
T ss_pred             cccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC---------------------CeEee-cccceEEEeecc
Confidence            9999999999999887765543221     23445555555                     45555 45678999998 


Q ss_pred             CCcceEEEEc--C---CCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCccc
Q 001311          592 DSVQLLTSID--A---DGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISP  665 (1102)
Q Consensus       592 ~~~~~~~~~~--~---~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (1102)
                      +.|.....+.  .   .+..+-+.+++|+| +.+.+++|+...++-|+.-... .++..                     
T Consensus       188 RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~-~pl~l---------------------  245 (406)
T KOG2919|consen  188 RPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR-RPLQL---------------------  245 (406)
T ss_pred             CCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC-Cceee---------------------
Confidence            5554322211  1   12234567889999 5558888887777666653222 11100                     


Q ss_pred             chhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEE
Q 001311          666 ISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL  745 (1102)
Q Consensus       666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~  745 (1102)
                                                                                                      
T Consensus       246 --------------------------------------------------------------------------------  245 (406)
T KOG2919|consen  246 --------------------------------------------------------------------------------  245 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe
Q 001311          746 IFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  825 (1102)
Q Consensus       746 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s  825 (1102)
                                                                            +  .+|.+.|+.++|.+||+.|.+|.
T Consensus       246 ------------------------------------------------------l--ggh~gGvThL~~~edGn~lfsGa  269 (406)
T KOG2919|consen  246 ------------------------------------------------------L--GGHGGGVTHLQWCEDGNKLFSGA  269 (406)
T ss_pred             ------------------------------------------------------e--cccCCCeeeEEeccCcCeecccc
Confidence                                                                  0  12677788888888888888887


Q ss_pred             --CCeEEEEEcCC-CceeeeecCCCC-CeeEEE--EecCCCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccceeEEE
Q 001311          826 --GGKISLFNMMT-FKTMATFMPPPP-AATFLA--FHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAF  898 (1102)
Q Consensus       826 --dg~I~iwd~~~-~~~~~~~~~~~~-~i~~l~--~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~  898 (1102)
                        |..|..||++. ...+..+..|.. .-..|-  ..| ++++||+|+.||.|++||+++ +..+..+..|+..|+.+++
T Consensus       270 Rk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvsl  348 (406)
T KOG2919|consen  270 RKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSL  348 (406)
T ss_pred             cCCCeEEEEeehhccchhhhhhhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceec
Confidence              67899999874 455666766655 333444  457 799999999999999999998 7778888889999999999


Q ss_pred             ecCCCEEEEEcCC
Q 001311          899 SHALNVLVSSGAD  911 (1102)
Q Consensus       899 s~d~~~l~s~s~D  911 (1102)
                      +|--.++|+++..
T Consensus       349 nP~mpilatssGq  361 (406)
T KOG2919|consen  349 NPIMPILATSSGQ  361 (406)
T ss_pred             CcccceeeeccCc
Confidence            9998888888754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=5.7e-17  Score=164.53  Aligned_cols=301  Identities=16%  Similarity=0.190  Sum_probs=214.6

Q ss_pred             ccceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          739 ATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       739 ~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      ..++..+.|.+++. .+++++.|..|++|.+....-......              ......+.  .|...|.++.|+|+
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~--------------V~y~s~Ls--~H~~aVN~vRf~p~   76 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMK--------------VEYLSSLS--RHTRAVNVVRFSPD   76 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCcee--------------EEEeeccc--CCcceeEEEEEcCC
Confidence            35788899988877 899999999999999865422111000              01111122  39999999999999


Q ss_pred             CCeEEEEe-CCeEEEEEcC--------C--------CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          818 DSYVMSAS-GGKISLFNMM--------T--------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                      |..+|+|+ +|.|.+|-..        +        +...+.+.+|...|..++|+| +++++++|+-|..+++||+..|
T Consensus        77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence            99999999 6899999765        2        334566788999999999999 9999999999999999999999


Q ss_pred             eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceee---eecCCCCCC------------CCCCCcE
Q 001311          881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF---LQIPTGRTP------------TAQSDTR  945 (1102)
Q Consensus       881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~------------~~~~v~~  945 (1102)
                      .....+.+|...|..++|.|-++++++-+.|...+++++...+.....-   +....+...            ...--..
T Consensus       156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR  235 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR  235 (434)
T ss_pred             eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence            9999999999999999999999999999999977777765533222111   000000000            0012256


Q ss_pred             EEEccCCcEEEEE-----eCC-----eEEEEEcCCceE-eeeeccCCCCCCeeEEEEcC------------------CCc
Q 001311          946 VQFHQDQIHFLVV-----HET-----QLAIFETTKLEC-VKQWVPRESSAPITHATFSC------------------DSQ  996 (1102)
Q Consensus       946 ~~~spdg~~l~~~-----~d~-----~i~iwd~~~~~~-~~~~~~~~h~~~v~~l~~sp------------------d~~  996 (1102)
                      ++|+|||.+|++.     ..+     ..++|+-...+. ...+  .+-..+...+.|+|                  -+-
T Consensus       236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~l--p~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl  313 (434)
T KOG1009|consen  236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARL--PSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL  313 (434)
T ss_pred             cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeec--CCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence            8999999999872     122     334554432221 1111  12345556666654                  122


Q ss_pred             EEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311          997 LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus       997 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      .+|.++ -..|+|||.++.+.++.+...+|..       +.  .++|++ ||..|+..|.||-..+--++..|
T Consensus       314 vfaiAt-~~svyvydtq~~~P~~~v~nihy~~-------iT--Diaws~-dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  314 VFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSA-------IT--DIAWSD-DGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             EEEEee-cceEEEeccccccceEEEeeeeeee-------ec--ceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence            344554 5689999999999988877555444       44  899998 78999999999988877776666

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=2.1e-17  Score=166.50  Aligned_cols=220  Identities=14%  Similarity=0.235  Sum_probs=166.3

Q ss_pred             ccccCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCcee----eeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311          401 AALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  475 (1102)
Q Consensus       401 ~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~  475 (1102)
                      .....||+++|..++|+| +...||+||.|.+|.||++-.+...    .....|.||...|.-|+|.|.-.. +|+|+|.
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~  152 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGS  152 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccC
Confidence            336889999999999999 8889999999999999998755432    345679999999999999998877 7999999


Q ss_pred             CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCC-eeeEEEEccCCc
Q 001311          476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGR-WCTTMAYSADGT  554 (1102)
Q Consensus       476 d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~~~~  554 (1102)
                      |.+|.+||+.+|+.+.++. |...|.+++|+  .||.+|++.+.|+.||+||.++++....-..|.+ .-....|..+  
T Consensus       153 Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~--  227 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLAS--  227 (472)
T ss_pred             CceEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEecc--
Confidence            9999999999999999988 99999999984  5678999999999999999999877765544433 2222333333  


Q ss_pred             eeeeccccCceeEEEEcCCCCEEEEEe----CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEE-EECCCc
Q 001311          555 RTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV-STNDNG  629 (1102)
Q Consensus       555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~  629 (1102)
                                         +. +++.+    .+..+-+||..+-+.-..+..-.....|.---|.+|.+.++. |-.|+.
T Consensus       228 -------------------g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~  287 (472)
T KOG0303|consen  228 -------------------GK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSS  287 (472)
T ss_pred             -------------------Cc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcc
Confidence                               34 44433    588899999876543222221222223544456778777664 556999


Q ss_pred             EEEEEccCCccceeecc
Q 001311          630 IKILATSDGIRLLRTFE  646 (1102)
Q Consensus       630 i~iwd~~~~~~~~~~~~  646 (1102)
                      ||.|.+.+....+..+.
T Consensus       288 IRYyEit~d~P~~hyln  304 (472)
T KOG0303|consen  288 IRYFEITNEPPFVHYLN  304 (472)
T ss_pred             eEEEEecCCCceeEEec
Confidence            99999988754454443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=3.5e-17  Score=165.02  Aligned_cols=244  Identities=14%  Similarity=0.209  Sum_probs=176.7

Q ss_pred             CccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311          336 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  415 (1102)
Q Consensus       336 ~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  415 (1102)
                      .......-+|++.|..++|+|-....+|+||.|.+|.||++..+.....            ..-....+.||...|.-++
T Consensus        71 d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~------------ltepvv~L~gH~rrVg~V~  138 (472)
T KOG0303|consen   71 DASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD------------LTEPVVELYGHQRRVGLVQ  138 (472)
T ss_pred             CCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC------------cccceEEEeecceeEEEEe
Confidence            3444456689999999999999888999999999999999976654432            1122336899999999999


Q ss_pred             Ecc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311          416 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  494 (1102)
Q Consensus       416 ~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~  494 (1102)
                      |+| -.+.|++++.|.+|.+||+.+|+.+.   ++. |.+-|+++.|+.||.  +++|.+.|+.|||||.++|+.+..-.
T Consensus       139 wHPtA~NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~  212 (472)
T KOG0303|consen  139 WHPTAPNVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGV  212 (472)
T ss_pred             ecccchhhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecc
Confidence            999 57789999999999999999998665   354 999999999999999  79999999999999999999999888


Q ss_pred             cCCCCeEEEeeeecCCccEEEEEe---CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311          495 GHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  571 (1102)
Q Consensus       495 ~h~~~v~~v~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  571 (1102)
                      +|.+.-..-++ +-.+|.++.+|-   .+..+-+||..+.+....+..-                   .+...+..--++
T Consensus       213 ~heG~k~~Rai-fl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~el-------------------DtSnGvl~PFyD  272 (472)
T KOG0303|consen  213 AHEGAKPARAI-FLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQEL-------------------DTSNGVLLPFYD  272 (472)
T ss_pred             cccCCCcceeE-EeccCceeeeccccccccceeccCcccccCcceeEEe-------------------ccCCceEEeeec
Confidence            88765332221 245556444442   3678999988765443221110                   011123333456


Q ss_pred             CCCCEEEEEe-CCCeEEEEECCCcce-EEEEcCCCCCCCcCeEEEcCC
Q 001311          572 TTKNRFLAAG-DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKD  617 (1102)
Q Consensus       572 ~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~  617 (1102)
                      ++.+.++.+| .|+.||-|.+....+ ++-+........-..+.|-|.
T Consensus       273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence            6667776655 799999999977653 233322222233455777664

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2.9e-16  Score=171.05  Aligned_cols=510  Identities=14%  Similarity=0.155  Sum_probs=290.1

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC-----
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD-----  419 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd-----  419 (1102)
                      |...-.++.|+|.|  |+|-|+. ..|.|-|..+-+.+.                   .+.-|...|+.+.|.|-     
T Consensus        14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~   71 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD   71 (1062)
T ss_pred             CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence            33446789999999  6888775 678899988877776                   47789999999999872     


Q ss_pred             -C------CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC---CCeeEEEEecCCCcEEEEeCCCCee
Q 001311          420 -G------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGDDKTIKVWDATNGAK  489 (1102)
Q Consensus       420 -g------~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~~d~~i~vWd~~~~~~  489 (1102)
                       +      -+||++...|.|.+||...+..+.   .+..|.++|..++|-+.   .+. +|+.-....+|.+|+..+|+.
T Consensus        72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence             1      257778888999999999876544   47789999999998653   334 455555567999999999999


Q ss_pred             eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCc-------eeeec--c
Q 001311          490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------RTYQG--F  560 (1102)
Q Consensus       490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------~~~~~--~  560 (1102)
                      ............|+.+.|-...++.+.+ ..|.+.+-+.-.....      ......+.+..+-.       ....+  +
T Consensus       148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep------~~pgk~~qI~sd~Sdl~~lere~at~ns~  220 (1062)
T KOG1912|consen  148 FWKYDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEP------DVPGKEFQITSDHSDLAHLERETATGNST  220 (1062)
T ss_pred             eeccccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCC------CCCceeEEEecCccchhhhhhhhhccccc
Confidence            9888766666666776554443444444 4577766654321110      00111111111100       00000  0


Q ss_pred             ccC--c------eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC--CEEEEEECCCcE
Q 001311          561 RKR--S------LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG--CLLAVSTNDNGI  630 (1102)
Q Consensus       561 ~~~--~------i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i  630 (1102)
                      +..  .      ..-++|+|.-+.++-..-...+.++|++-..++.......+  .+.-+.+-|++  ..|++.-.||.+
T Consensus       221 ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~l  298 (1062)
T KOG1912|consen  221 TSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRL  298 (1062)
T ss_pred             cCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeE
Confidence            000  0      11245677655566666677899999999888888876655  34446776754  579999999999


Q ss_pred             EEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccC
Q 001311          631 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES  710 (1102)
Q Consensus       631 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  710 (1102)
                      .+|-.+......+.-..+-              +.                                           +.
T Consensus       299 tirvrk~~~~~f~~~~~~l--------------~~-------------------------------------------dl  321 (1062)
T KOG1912|consen  299 TIRVRKEEPTEFKKPNASL--------------SM-------------------------------------------DL  321 (1062)
T ss_pred             EEEEeeccCccccccchhh--------------cc-------------------------------------------cc
Confidence            9997654322211110000              00                                           00


Q ss_pred             CCccceEecccCCCCCccccccCCCcccccceEEEEEccC-CceEEEeecCceEEeeeccccccCCCCcccccccceecc
Q 001311          711 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS-GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  789 (1102)
Q Consensus       711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~  789 (1102)
                      ...+.+....                 .+..+......|. .+.++..-.+|...+|.+..+....++......-..-+|
T Consensus       322 ~~Q~~~vr~m-----------------~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~  384 (1062)
T KOG1912|consen  322 GEQVHVVRPM-----------------EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFD  384 (1062)
T ss_pred             ccceEEEeec-----------------hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccccccc
Confidence            0000000000                 1111112222232 233444455666666766543332222110000000000


Q ss_pred             CCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCe--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311          790 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM  867 (1102)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~--I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~  867 (1102)
                      .......         -....-+.+|.||..    +.|.  +++--+..........  .+. +....-|    ++|.|+
T Consensus       385 f~~~~~~---------v~k~~l~~LS~dg~h----~sGs~~~~~~p~p~~t~~~~~p--~~n-~~~~~~p----LvAvGT  444 (1062)
T KOG1912|consen  385 FNLSTKL---------VGKTSLISLSDDGSH----SSGSTCVRMRPMPELTKVENDP--GGN-TPAGTVP----LVAVGT  444 (1062)
T ss_pred             ccCceee---------hhhccccchhhcCCC----CCCceeeecccCcccceeecCC--CCC-ccceeee----eEEeec
Confidence            0000000         000000111111100    0011  0000011111111111  111 1111223    899999


Q ss_pred             CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc----------CCCcEEEEEcCCCcccceeeeecCCCCC
Q 001311          868 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG----------ADSQLCVWSSDGWEKQKNRFLQIPTGRT  937 (1102)
Q Consensus       868 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s----------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~  937 (1102)
                      +.|+|.|+|+.++...+.+..|.+.|.++.|-.... |++.+          .-+.+.|-|+.+|.....+-++.     
T Consensus       445 ~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~-----  518 (1062)
T KOG1912|consen  445 NSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQK-----  518 (1062)
T ss_pred             CCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCCC-----
Confidence            999999999999999999999999999999976544 33332          22457888999876544333222     


Q ss_pred             CCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCC-eeEEEEc
Q 001311          938 PTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP-ITHATFS  992 (1102)
Q Consensus       938 ~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~-v~~l~~s  992 (1102)
                      +...+|+.+..|.-|+||++. .+.-+.+||+++..+++....   .-+ |+.+.|+
T Consensus       519 ~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~---a~P~it~leWs  572 (1062)
T KOG1912|consen  519 PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL---ALPLITVLEWS  572 (1062)
T ss_pred             CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh---cCCcEEEEeec
Confidence            233689999999999999996 888999999988877665432   234 8888888

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=8.1e-16  Score=167.65  Aligned_cols=605  Identities=11%  Similarity=0.092  Sum_probs=343.0

Q ss_pred             CCCCCccceeecc-CCCCeeEEEEecC-----------CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccc
Q 001311          332 PEDLPKTVTRTLN-QGSSPMSMDFHPV-----------QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL  399 (1102)
Q Consensus       332 ~~~~~~~~~~~~~-h~~~v~~v~~spd-----------g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  399 (1102)
                      +|...-+.+..+. |...|+.|.|.|-           .+.++|++...|.|.|||+..+..+.                
T Consensus        40 VDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~----------------  103 (1062)
T KOG1912|consen   40 VDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN----------------  103 (1062)
T ss_pred             EehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh----------------
Confidence            3444445555555 8899999999762           35678999999999999999886665                


Q ss_pred             cccccCCCCCCeEEEEEcc---CC-CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311          400 QAALVKDPGVSVNRVIWSP---DG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  475 (1102)
Q Consensus       400 ~~~~~~~h~~~V~~l~~sp---dg-~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~  475 (1102)
                         -+..|.++|..++|-+   +. ..|++-....++.+|+..+|+.+-+   ...-.....|+.+.|-+..-+.+.|+ 
T Consensus       104 ---~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk---~~ys~~iLs~f~~DPfd~rh~~~l~s-  176 (1062)
T KOG1912|consen  104 ---WLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK---YDYSHEILSCFRVDPFDSRHFCVLGS-  176 (1062)
T ss_pred             ---hhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec---cccCCcceeeeeeCCCCcceEEEEcc-
Confidence               3778899999999987   44 5677777888999999999986643   23334567778888866542444444 


Q ss_pred             CCcEEEEeCC-C------CeeeEEeecCCC----------------C-------eEEEeeeecCCccEEEEEeCCCeEEE
Q 001311          476 DKTIKVWDAT-N------GAKQYIFEGHEA----------------P-------VYSVCPHHKENIQFIFSTALDGKIKA  525 (1102)
Q Consensus       476 d~~i~vWd~~-~------~~~~~~~~~h~~----------------~-------v~~v~~~~~~~~~~l~s~s~dg~i~~  525 (1102)
                      .|.+.+-+.- .      |+..+.-..|..                .       ..+..|.+.+.-+-++-......+.+
T Consensus       177 ~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv  256 (1062)
T KOG1912|consen  177 KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLV  256 (1062)
T ss_pred             CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEE
Confidence            4555554432 1      233332222222                0       01111222222222333344577889


Q ss_pred             EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC------------
Q 001311          526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------------  593 (1102)
Q Consensus       526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------  593 (1102)
                      +|++-..++.....+.+.+.-+.+.|++++                   ..|++.-.||.+.+|-.+.            
T Consensus       257 ~dle~~~~l~vvpier~~akfv~vlP~~~r-------------------d~LfclH~nG~ltirvrk~~~~~f~~~~~~l  317 (1062)
T KOG1912|consen  257 FDLEYECCLAVVPIERGGAKFVDVLPDPRR-------------------DALFCLHSNGRLTIRVRKEEPTEFKKPNASL  317 (1062)
T ss_pred             EcchhhceeEEEEeccCCcceeEeccCCCc-------------------ceEEEEecCCeEEEEEeeccCccccccchhh
Confidence            999887777777766666666777777653                   4588888999999997654            


Q ss_pred             ----cceEEEEcCCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEccCCccceeeccccccccccc---------CCCC
Q 001311          594 ----VQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT---------SENS  659 (1102)
Q Consensus       594 ----~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------~~~~  659 (1102)
                          +..+..+....... .......|. ...++.--.+|.+.+|.+.++........+........         ....
T Consensus       318 ~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~  396 (1062)
T KOG1912|consen  318 SMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTS  396 (1062)
T ss_pred             ccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhcc
Confidence                22222222111111 222333443 55566666788899999887632211111111111000         0000


Q ss_pred             CCCcccchhhhHhhhhcccc-cccccccc--ccCCCCCCcccc-CCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311          660 KPTISPISAAAAAAATSAGL-ADRAASMV--SIPGMNGDVRSL-ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  735 (1102)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~-~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  735 (1102)
                      ...++.++      .-+.|. +.+..|+.  ....-.+..... --...++.|...|+|.++|+.+.......       
T Consensus       397 l~~LS~dg------~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~f-------  463 (1062)
T KOG1912|consen  397 LISLSDDG------SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASF-------  463 (1062)
T ss_pred             ccchhhcC------CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhh-------
Confidence            00111111      000110 11111111  111111111111 12355678889999999999875443332       


Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                      ..|...|.++.|..+.+.+-.+.+. ..            +........+.+-|+.+|.-....-.....+.+|+.+..|
T Consensus       464 svht~~VkgleW~g~sslvSfsys~-~n------------~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS  530 (1062)
T KOG1912|consen  464 SVHTSLVKGLEWLGNSSLVSFSYSH-VN------------SASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVS  530 (1062)
T ss_pred             cccccceeeeeeccceeEEEeeecc-cc------------ccccceeeeEEEEEcccccccccccCCCCCcCcceeeeec
Confidence            3488999999998887744333221 00            0000111233455667776544332233468899999999


Q ss_pred             cCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe-cCCC----------------cEEEEEeCCCcEEEEEe
Q 001311          816 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDN----------------NIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~----------------~~lasg~~dg~v~vwd~  877 (1102)
                      .-++|++..- +.-+.+||+++..+++.....-.-|+.+.|+ | .-                +..+..+  +..+++.+
T Consensus       531 ~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~-~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~  607 (1062)
T KOG1912|consen  531 SSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLP-KHPSIKQKELSKQSSMSENLVVLDS--VESRIYHI  607 (1062)
T ss_pred             ccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeeccc-CCCCcccccchhhhhhhhceeeecc--ccchheeh
Confidence            9999999998 8889999999888776655444558889988 3 21                1333333  23333333


Q ss_pred             ec-------cee-eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311          878 RV-------DEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  949 (1102)
Q Consensus       878 ~~-------~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  949 (1102)
                      ..       +.. ....+.....+..|+|  .+..|+.|+.+|.+.+||+.......  ....+. +   -.......+-
T Consensus       608 ~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg--~~d~p~-~---ra~~l~~~~i  679 (1062)
T KOG1912|consen  608 TLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG--VRDSPD-P---RAHSLTFPQI  679 (1062)
T ss_pred             hhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC--ccCCCC-c---hhhheecccC
Confidence            21       111 1111112223445677  46789999999999999987643211  111111 0   0122333444


Q ss_pred             cCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeE
Q 001311          950 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus       950 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
                      |....+++-...-+.+||.+....+..+.....+..+..+.+......++  ..|.++|+--+......
T Consensus       680 pG~~~~lvl~~d~~~lwdtk~~~lV~siag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~~  746 (1062)
T KOG1912|consen  680 PGDHTTLVLELDWLPLWDTKADTLVLSIAGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSPP  746 (1062)
T ss_pred             CCCceEEEEecCcceecccccceeeeeeccCCcceEEEEEEecccCceec--CCCCceeEEeccccCCc
Confidence            54444555556678899999888887774333345566666665444444  34457777666555443

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=1.4e-17  Score=190.68  Aligned_cols=278  Identities=14%  Similarity=0.193  Sum_probs=208.9

Q ss_pred             cCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCce----EEEeecCceEEeeeccccccCCCCccccccc
Q 001311          709 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA----ILALASNAIHLLWKWQRTERNSSGKATASVA  784 (1102)
Q Consensus       709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~----l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  784 (1102)
                      +.+.++.+|.+........++....  .....+-..++|.+.|..    ++.|..||.|.+|+......+...       
T Consensus        36 st~~slEifeld~~~~~~dlk~~~s--~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~-------  106 (1049)
T KOG0307|consen   36 STSASLEIFELDFSDESSDLKPVGS--LQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASE-------  106 (1049)
T ss_pred             ccccccceeeecccCcccccccccc--ccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcch-------
Confidence            4456777777665443322221111  114567788999998877    777778999999987431000000       


Q ss_pred             ceeccCCCccccccccCCCCCCCCeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCC
Q 001311          785 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDN  860 (1102)
Q Consensus       785 ~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~  860 (1102)
                               .++   .....|.+.|..+.|++... +||+|+ ||.|.|||+...+...++.  .....|.+++|+....
T Consensus       107 ---------~~l---a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvq  174 (1049)
T KOG0307|consen  107 ---------EVL---ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVS  174 (1049)
T ss_pred             ---------HHH---hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhh
Confidence                     011   11123999999999999776 899998 8999999999866555542  2456899999998778


Q ss_pred             cEEEEEeCCCcEEEEEeecceeeeeeccccc--cceeEEEecCC-CEEEEEcCCC---cEEEEEcCCCcccceeeeecCC
Q 001311          861 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK--RITGLAFSHAL-NVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPT  934 (1102)
Q Consensus       861 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~--~V~~l~~s~d~-~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~  934 (1102)
                      ++||+++.+|.+.|||++..+.+-.+..|.+  .+..|+|+|++ ..|++++.|.   .|.+||++.-    ...+++.+
T Consensus       175 hILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~a----ssP~k~~~  250 (1049)
T KOG0307|consen  175 HILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFA----SSPLKILE  250 (1049)
T ss_pred             HHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeeccccc----CCchhhhc
Confidence            8999999999999999999888888877665  36689999986 5566666553   5999998753    23566677


Q ss_pred             CCCCCCCCCcEEEEccCC-cEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEeCCCeEEEEE
Q 001311          935 GRTPTAQSDTRVQFHQDQ-IHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACFLDATVCVFS 1011 (1102)
Q Consensus       935 ~~~~~~~~v~~~~~spdg-~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s~Dg~I~vwd 1011 (1102)
                      +|..   .|.++.|++.+ .+|++ +.|+.|.+|+.++++.+..+..  ....+..+.|+|..- .+++++-||.|.||.
T Consensus       251 ~H~~---GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~s  325 (1049)
T KOG0307|consen  251 GHQR---GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYS  325 (1049)
T ss_pred             cccc---ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC--CCcceeeeeecCCCcchhhhheeccceeeee
Confidence            7775   89999999977 77777 5999999999999999999874  478999999999655 889999999999999


Q ss_pred             cCCce
Q 001311         1012 AANLK 1016 (1102)
Q Consensus      1012 ~~~~~ 1016 (1102)
                      +.++.
T Consensus       326 l~~~~  330 (1049)
T KOG0307|consen  326 LQGTD  330 (1049)
T ss_pred             eecCC
Confidence            87765

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=1.5e-15  Score=168.73  Aligned_cols=279  Identities=10%  Similarity=0.115  Sum_probs=178.4

Q ss_pred             cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec-CceEEeeeccccccCCCCcccccc
Q 001311          705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASV  783 (1102)
Q Consensus       705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~  783 (1102)
                      .++...++.|.+|++...........+.     .......++++|++++|++++. ++.|.+|++..             
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-----~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~-------------   66 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-----VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIAD-------------   66 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-----cCCCCccEEECCCCCEEEEEECCCCcEEEEEECC-------------
Confidence            3445678999999996422222223221     2345678899999998877654 68888888631             


Q ss_pred             cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCC-Cc---eeeeecCCCCCeeEEEEec
Q 001311          784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FK---TMATFMPPPPAATFLAFHP  857 (1102)
Q Consensus       784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~-~~---~~~~~~~~~~~i~~l~~sp  857 (1102)
                              ++.+.....  .........++++|+++++++++  ++.|.+|++.+ +.   .+..+. +.....+++++|
T Consensus        67 --------~g~l~~~~~--~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p  135 (330)
T PRK11028         67 --------DGALTFAAE--SPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP  135 (330)
T ss_pred             --------CCceEEeee--ecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC
Confidence                    111100000  00223467899999999999887  78999999974 22   222232 234467789999


Q ss_pred             CCCcEEE-EEeCCCcEEEEEeecceeee-------eeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCC--Ccccc
Q 001311          858 QDNNIIA-IGMDDSSIQIYNVRVDEVKS-------KLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG--WEKQK  926 (1102)
Q Consensus       858 ~d~~~la-sg~~dg~v~vwd~~~~~~~~-------~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~--~~~~~  926 (1102)
                       ++++++ +...++.|.+||+.+...+.       .... ......++|+|||++|+++.. +++|.+|+++.  ++...
T Consensus       136 -~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~  213 (330)
T PRK11028        136 -DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC  213 (330)
T ss_pred             -CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence             777665 55567999999997632221       1111 233567999999999988776 89999999974  22211


Q ss_pred             eeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce----EeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311          927 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus       927 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
                      ...+...............+.|+|||++++++  .++.|.+|++....    .+.....   ......++|+|||++|++
T Consensus       214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~v  290 (330)
T PRK11028        214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIA  290 (330)
T ss_pred             EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEE
Confidence            11222111111111223468999999999996  46899999986432    2222221   234568899999999998


Q ss_pred             EeC-CCeEEEEEcC--Ccee
Q 001311         1001 CFL-DATVCVFSAA--NLKL 1017 (1102)
Q Consensus      1001 ~s~-Dg~I~vwd~~--~~~~ 1017 (1102)
                      ++. +++|.||+++  ++.+
T Consensus       291 a~~~~~~v~v~~~~~~~g~l  310 (330)
T PRK11028        291 AGQKSHHISVYEIDGETGLL  310 (330)
T ss_pred             EEccCCcEEEEEEcCCCCcE
Confidence            775 8999999874  4443

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2.9e-17  Score=173.65  Aligned_cols=229  Identities=16%  Similarity=0.285  Sum_probs=179.2

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEcc-----CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYH-----GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  477 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~-----~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~  477 (1102)
                      .+..|.+.|+.++|.|....|++|+.||++++|++.     ....+.++.++++|.++|.|+++.+++.  .+++|+.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            477899999999999999999999999999999993     3345678889999999999999999999  799999999


Q ss_pred             cEEEEeCC------CC----eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCC--CCeee
Q 001311          478 TIKVWDAT------NG----AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GRWCT  545 (1102)
Q Consensus       478 ~i~vWd~~------~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~  545 (1102)
                      +|+.|++.      +.    .....+.||++.|+.++++...  ..|++++.||+++.|+...... .++...  .+...
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            99999554      21    2335778999999999987665  5699999999999998876554 222221  11122


Q ss_pred             EEEEccCC--------c---------------eeeec------cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce
Q 001311          546 TMAYSADG--------T---------------RTYQG------FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL  596 (1102)
Q Consensus       546 ~~~~s~~~--------~---------------~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  596 (1102)
                      ++.+....        +               +++..      .....+.-+..+|.+.+.+++.+|+.|+++|..+++.
T Consensus       444 svd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~  523 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI  523 (577)
T ss_pred             eEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc
Confidence            22221111        0               11111      1113456678889999999999999999999999999


Q ss_pred             EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          597 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       597 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +.....+.  ..++++++.|+|-+|++++.||.+++|.....
T Consensus       524 l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  524 LHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             chheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence            98887664  47999999999999999999999999987655

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.8e-16  Score=157.45  Aligned_cols=151  Identities=18%  Similarity=0.282  Sum_probs=119.4

Q ss_pred             EEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEE
Q 001311          469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  548 (1102)
Q Consensus       469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  548 (1102)
                      .++++-..|+|+++|..+|+.+..|+++...++.+.|........+.+|+.||+|++||++.......+.          
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~----------  111 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS----------  111 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee----------
Confidence            5788888999999999999999999999999999999765456789999999999999999765443322          


Q ss_pred             EccCCceeeeccccCceeEEEEcCCCCEEEEEe----CCCeEEEEECCCcce-EEEEcCCCCCCCcCeEEEcC-CCCEEE
Q 001311          549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG----DDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNK-DGCLLA  622 (1102)
Q Consensus       549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~-~~~~l~  622 (1102)
                              +.++...++.+++..-.++.+++|.    .+-.|.+||++..+. +..+. ..|...|+++.|+| +..+|+
T Consensus       112 --------~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLl  182 (376)
T KOG1188|consen  112 --------WTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLL  182 (376)
T ss_pred             --------ccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEE
Confidence                    2222233566666666667777765    478899999998776 44443 44556899999999 778999


Q ss_pred             EEECCCcEEEEEccCC
Q 001311          623 VSTNDNGIKILATSDG  638 (1102)
Q Consensus       623 ~~~~dg~i~iwd~~~~  638 (1102)
                      +|+.||.|.+||+...
T Consensus       183 SGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  183 SGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eecccceEEeeecCCC
Confidence            9999999999998654

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=2.6e-16  Score=152.21  Aligned_cols=234  Identities=15%  Similarity=0.245  Sum_probs=161.6

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-  816 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-  816 (1102)
                      +-+.|.++.|.|++..+++-. |..|.+|++.....-     .+.            +...  ...++....++-+|+| 
T Consensus       122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~-----vae------------v~ss--~s~e~~~~ftsg~WspH  181 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKI-----VAE------------VLSS--ESAEMRHSFTSGAWSPH  181 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcch-----hee------------eccc--ccccccceecccccCCC
Confidence            556899999999999888776 778899987543210     000            0000  0011455677788887 


Q ss_pred             -CCCeEEEEeCCeEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccc
Q 001311          817 -NDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRI  893 (1102)
Q Consensus       817 -d~~~las~sdg~I~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V  893 (1102)
                       |+..+++.+|+++..||+++..+...+ .+|...|..+.|+|....+||+|++||.|+|||.++ ...+..+.+|+.-|
T Consensus       182 Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWv  261 (370)
T KOG1007|consen  182 HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWV  261 (370)
T ss_pred             CccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEE
Confidence             899999999999999999988776655 468888999999996677999999999999999986 56788999999999


Q ss_pred             eeEEEecC-CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce
Q 001311          894 TGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE  972 (1102)
Q Consensus       894 ~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~  972 (1102)
                      +++.|+|. .+++.++|.|..|.+|....-.......................                 ++  -+..| 
T Consensus       262 W~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer-----------------~k--pL~dg-  321 (370)
T KOG1007|consen  262 WAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEER-----------------VK--PLQDG-  321 (370)
T ss_pred             EEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHh-----------------cc--ccccc-
Confidence            99999986 46778999999999998765221110000000000000000000                 00  01111 


Q ss_pred             EeeeeccCCCCCCeeEEEEcCCCcE-EEEEeCCCeEEEEEcC
Q 001311          973 CVKQWVPRESSAPITHATFSCDSQL-VYACFLDATVCVFSAA 1013 (1102)
Q Consensus       973 ~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s~Dg~I~vwd~~ 1013 (1102)
                      .+.++  ..|.+.|++++||.-.-+ +|+-+.||.+.|=.+.
T Consensus       322 ~l~ty--dehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  322 QLETY--DEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccc--cccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            11222  378999999999986665 6788999999886554

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=2.4e-16  Score=177.45  Aligned_cols=306  Identities=16%  Similarity=0.258  Sum_probs=209.7

Q ss_pred             cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC---CCCeEEEeeeecCCccEEEEEeCCCeEEEEEc
Q 001311          452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  528 (1102)
Q Consensus       452 h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~  528 (1102)
                      ...+-..+.|+|-..  .++++...-.|+|||.+.++++..|..+   ...|+.+++-...|..++++|+.||.||+|+-
T Consensus      1063 n~~~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~ 1140 (1387)
T KOG1517|consen 1063 NNQPPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKD 1140 (1387)
T ss_pred             CCCCCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecc
Confidence            344566788888888  5788887779999999999998888654   35588888877777789999999999999964


Q ss_pred             CCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311          529 DNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  607 (1102)
Q Consensus       529 ~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  607 (1102)
                      -... ...++...-..+..+..         +..+.. ..+.|.....+|+++|+-..|+|||......+..+..... .
T Consensus      1141 y~~~~~~~eLVTaw~~Ls~~~~---------~~r~~~-~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t 1209 (1387)
T KOG1517|consen 1141 YADKWKKPELVTAWSSLSDQLP---------GARGTG-LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-T 1209 (1387)
T ss_pred             cccccCCceeEEeeccccccCc---------cCCCCC-eeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-c
Confidence            3321 11111111111111111         111112 5567777777888888899999999998888877764432 3


Q ss_pred             CcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311          608 ASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  686 (1102)
Q Consensus       608 ~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1102)
                      .++++.-+- .|+.+++|..||.|++||.+.....                                             
T Consensus      1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------------------------------- 1244 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------------------------------- 1244 (1387)
T ss_pred             cceeecccccCCceEEEeecCCceEEeecccCCcc---------------------------------------------
Confidence            465555443 5799999999999999997654110                                             


Q ss_pred             cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc--eEEEEEccCCce-EEEeecCceE
Q 001311          687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK--ISRLIFTNSGNA-ILALASNAIH  763 (1102)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~s~~g~~-l~~~~~dg~i  763 (1102)
                                               ..|.+|.                  .|+..  |..+.+-+.|-. |++++.||.|
T Consensus      1245 -------------------------s~v~~~R------------------~h~~~~~Iv~~slq~~G~~elvSgs~~G~I 1281 (1387)
T KOG1517|consen 1245 -------------------------SLVCVYR------------------EHNDVEPIVHLSLQRQGLGELVSGSQDGDI 1281 (1387)
T ss_pred             -------------------------ccceeec------------------ccCCcccceeEEeecCCCcceeeeccCCeE
Confidence                                     1111221                  13333  778888776654 9999999999


Q ss_pred             EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeee
Q 001311          764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF  843 (1102)
Q Consensus       764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~  843 (1102)
                      ++||+..... ...-.    -+.-|+               ..+..+++..+++...+|+|+.+.|+||++.. +.+..+
T Consensus      1282 ~~~DlR~~~~-e~~~~----iv~~~~---------------yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G-~~l~~~ 1340 (1387)
T KOG1517|consen 1282 QLLDLRMSSK-ETFLT----IVAHWE---------------YGSALTALTVHEHAPIIASGSAQLIKIYSLSG-EQLNII 1340 (1387)
T ss_pred             EEEecccCcc-cccce----eeeccc---------------cCccceeeeeccCCCeeeecCcceEEEEecCh-hhhccc
Confidence            9999854210 00000    000010               13358999999999999999999999999864 444433


Q ss_pred             cC-------CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          844 MP-------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       844 ~~-------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                      +.       ..+.+.|++|+| -.-++|+|+.|.+|.||...+.
T Consensus      1341 k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1341 KYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCc
Confidence            32       235689999999 8889999999999999987654

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.9e-16  Score=157.53  Aligned_cols=214  Identities=8%  Similarity=0.028  Sum_probs=151.2

Q ss_pred             cccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc---eeeeEEEe-eccccCEEEEEEcCCCCeeEEEEecC
Q 001311          400 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD---EVRQHLEI-DAHVGGVNDIAFSHPNKQLCVITCGD  475 (1102)
Q Consensus       400 ~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~---~~~~~~~l-~~h~~~V~~v~~s~d~~~~~l~s~~~  475 (1102)
                      ..+-+.+|.+.|.++.||.++++||+|+.|..++||+++.--   ..+++... ..|...|.|++|...+.  .+++|+.
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~  125 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGER  125 (609)
T ss_pred             hhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCC
Confidence            334578999999999999999999999999999999986321   11111112 23568999999998888  7999999


Q ss_pred             CCcEEEEeCCCCeeeEEeec--CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee---eecCCCCeeeEEEEc
Q 001311          476 DKTIKVWDATNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV---DYEAPGRWCTTMAYS  550 (1102)
Q Consensus       476 d~~i~vWd~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s  550 (1102)
                      +++|...|+++.+.+.++..  ..+.|+.+..++..  +.+++.+.+|.|.+||.+......   .......        
T Consensus       126 ~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D--N~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~--------  195 (609)
T KOG4227|consen  126 WGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD--NTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK--------  195 (609)
T ss_pred             cceeEeeecccceeeeeecccCcccceeecccCCCC--ceEEEEecCceEEEEeccCCCCCCceeeecCCCc--------
Confidence            99999999999999988862  23589999887763  689999999999999998644211   1111122        


Q ss_pred             cCCceeeeccccCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCcce-EEEEcCC----CCCCCcCeEEEcCCCCEEEEE
Q 001311          551 ADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQL-LTSIDAD----GGLPASPRIRFNKDGCLLAVS  624 (1102)
Q Consensus       551 ~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~----~~~~~v~~~~~s~~~~~l~~~  624 (1102)
                                   .+..+-|+|.. .+|++.+..+-+.+||.+.... +....+.    .....-.++.|+|.|..+.+-
T Consensus       196 -------------~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msi  262 (609)
T KOG4227|consen  196 -------------NFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSI  262 (609)
T ss_pred             -------------cceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhh
Confidence                         34444555544 3567788888999999875431 1111111    111123578899999988876


Q ss_pred             ECCCcEEEEEccCC
Q 001311          625 TNDNGIKILATSDG  638 (1102)
Q Consensus       625 ~~dg~i~iwd~~~~  638 (1102)
                      -....-.+||+.+.
T Consensus       263 RR~~~P~~~D~~S~  276 (609)
T KOG4227|consen  263 RRGKCPLYFDFISQ  276 (609)
T ss_pred             hccCCCEEeeeecc
Confidence            66555566776554

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.74  E-value=3.5e-15  Score=165.64  Aligned_cols=252  Identities=11%  Similarity=0.095  Sum_probs=164.7

Q ss_pred             CCeeEEEEecCCCeEEEEe--CCeEEEEEcC-CCce--eeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEeec-
Q 001311          807 EAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-  879 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~-~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-  879 (1102)
                      .....++++|++++|+++.  ++.|.+|++. ++..  ..... .......++|+| ++++|++++ .++.|.+|++.+ 
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~~  112 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDKD  112 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECCC
Confidence            4567889999999988775  6889999996 3332  22222 234577899999 787777665 488999999974 


Q ss_pred             ce---eeeeeccccccceeEEEecCCCEEEE-EcCCCcEEEEEcCCCcccce---eeeecCCCCCCCCCCCcEEEEccCC
Q 001311          880 DE---VKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKN---RFLQIPTGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       880 ~~---~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~spdg  952 (1102)
                      +.   .+..+.+ .....+++++|+++++++ ...++.|.+||+.+......   .......+     .....++|+|||
T Consensus       113 g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pdg  186 (330)
T PRK11028        113 GIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPNQ  186 (330)
T ss_pred             CCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCCC
Confidence            32   2233332 234567899999998855 45669999999986332111   11122222     245789999999


Q ss_pred             cEEEEE--eCCeEEEEEcCC--c--eEeeeeccC----CCCCCeeEEEEcCCCcEEEEEeC-CCeEEEEEcCCceeEEEe
Q 001311          953 IHFLVV--HETQLAIFETTK--L--ECVKQWVPR----ESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       953 ~~l~~~--~d~~i~iwd~~~--~--~~~~~~~~~----~h~~~v~~l~~spd~~~l~s~s~-Dg~I~vwd~~~~~~~~~~ 1021 (1102)
                      ++++++  .++.|.+|+++.  +  +.+..+...    .+......+.|+||+++|+++.. ++.|.+|+++......++
T Consensus       187 ~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~  266 (330)
T PRK11028        187 QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF  266 (330)
T ss_pred             CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence            999885  478999999973  3  233333211    11223456899999999998864 789999999654321111


Q ss_pred             CCCcccCCCCCCCcccceEEEecCCCCCEEEEEec-CCcEEEEeccCCCccccc
Q 001311         1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus      1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~-Dg~v~vW~~~~~~~~~~~ 1074 (1102)
                      .  ...+.+     ..+..+.|+| |+++|+++.. +++|.+|++....+.+..
T Consensus       267 ~--~~~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l~~  312 (330)
T PRK11028        267 E--GHQPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLLTE  312 (330)
T ss_pred             e--EEEecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcEEE
Confidence            1  011111     2233689999 5777776664 899999998654433433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.74  E-value=7.8e-17  Score=153.99  Aligned_cols=308  Identities=11%  Similarity=0.146  Sum_probs=198.9

Q ss_pred             eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee-cCCCCeEEEeeeecCCccEEEEEeCCCeE
Q 001311          445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKI  523 (1102)
Q Consensus       445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i  523 (1102)
                      +.+.+++|.+.|+++.|-.++.   |.+|..-|.|++|++.+.+.+..++ .|...|+.+...  ++ ..+.+-+.|+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~--p~-d~l~tqgRd~~L   79 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSI--PN-DSLDTQGRDPLL   79 (323)
T ss_pred             CeeEeccccchheehhhccchh---hhcccccceEEEEEeecCccchhhhhhccceeeceeec--CC-cchhhcCCCceE
Confidence            3456889999999999988886   8999999999999999999888888 567778877643  32 578999999999


Q ss_pred             EEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC-eEEEEECCCcceEEEEcC
Q 001311          524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-SIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~  602 (1102)
                      .+|++....-+..   +.-.+.++.|.+-.-  ..+   ....       ...++.-++.. .+.+-|......+...+.
T Consensus        80 ~lw~ia~s~~i~i---~Si~~nslgFCrfSl--~~~---~k~~-------eqll~yp~rgsde~h~~D~g~~tqv~i~dd  144 (323)
T KOG0322|consen   80 ILWTIAYSAFISI---HSIVVNSLGFCRFSL--VKK---PKNS-------EQLLEYPSRGSDETHKQDGGDTTQVQIADD  144 (323)
T ss_pred             EEEEccCcceEEE---eeeecccccccccee--ccC---CCcc-------hhheecCCcccchhhhhccCccceeEccCc
Confidence            9999876433221   112223333322110  000   0000       01111111100 122222222222222111


Q ss_pred             --CCCCCCcCeEEEcC-CC--CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001311          603 --DGGLPASPRIRFNK-DG--CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA  677 (1102)
Q Consensus       603 --~~~~~~v~~~~~s~-~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1102)
                        ....+.+.+..+.. ++  -+|++|.++|.+.+||+.++...+ .+......                          
T Consensus       145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~-~~~~~~kv--------------------------  197 (323)
T KOG0322|consen  145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKII-QLPQSSKV--------------------------  197 (323)
T ss_pred             hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceee-cccccccc--------------------------
Confidence              11223444444322 23  357788899999999998873322 22110000                          


Q ss_pred             ccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEe
Q 001311          678 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL  757 (1102)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  757 (1102)
                                                                            ..+...|..+|.++.|.+.-..=+++
T Consensus       198 ------------------------------------------------------~~~~ash~qpvlsldyas~~~rGisg  223 (323)
T KOG0322|consen  198 ------------------------------------------------------ESPNASHKQPVLSLDYASSCDRGISG  223 (323)
T ss_pred             ------------------------------------------------------ccchhhccCcceeeeechhhcCCcCC
Confidence                                                                  00112377889999988776666778


Q ss_pred             ecCceEEeeeccccccCCCCcccccccceeccCCCcccc-ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC
Q 001311          758 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM-TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM  835 (1102)
Q Consensus       758 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~  835 (1102)
                      +.+..+..|.++..                    +|.+. ..++.-  .+-.+..+.+-||++.+|+++ |+.||||+.+
T Consensus       224 ga~dkl~~~Sl~~s--------------------~gslq~~~e~~l--knpGv~gvrIRpD~KIlATAGWD~RiRVyswr  281 (323)
T KOG0322|consen  224 GADDKLVMYSLNHS--------------------TGSLQIRKEITL--KNPGVSGVRIRPDGKILATAGWDHRIRVYSWR  281 (323)
T ss_pred             Cccccceeeeeccc--------------------cCcccccceEEe--cCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence            88888888877432                    11111 001111  244578889999999999999 9999999999


Q ss_pred             CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          836 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       836 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                      +.+.+..+..|...|.+++|+| +..++|.++.|++|.+|++
T Consensus       282 tl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  282 TLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCchhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence            9999999999999999999999 8899999999999999986

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.74  E-value=5.4e-16  Score=152.60  Aligned_cols=396  Identities=13%  Similarity=0.152  Sum_probs=234.1

Q ss_pred             EEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311          413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~  492 (1102)
                      -++|||+|+|+|+++.- .+.|-|.++-+...    +.-.-+.|..+.|..|.-+ .|.....|+.|.+|++...+-...
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~q----lf~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQ----LFLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHH----HHHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            47899999999999866 78888887755332    2223467889999998875 566677899999999999998888


Q ss_pred             eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311          493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  572 (1102)
Q Consensus       493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  572 (1102)
                      +......+.+++|++++. .+|.+...|-.|.+|.+.+..... +..+..                     .+..++|++
T Consensus        87 Ideg~agls~~~WSPdgr-hiL~tseF~lriTVWSL~t~~~~~-~~~pK~---------------------~~kg~~f~~  143 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGR-HILLTSEFDLRITVWSLNTQKGYL-LPHPKT---------------------NVKGYAFHP  143 (447)
T ss_pred             eccCCCcceeeeECCCcc-eEeeeecceeEEEEEEeccceeEE-eccccc---------------------CceeEEECC
Confidence            988888899999965432 566777789999999998744322 222222                     334455555


Q ss_pred             CCCEEEEEeCC-C--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccc
Q 001311          573 TKNRFLAAGDD-F--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  649 (1102)
Q Consensus       573 ~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  649 (1102)
                      +|++.+..+.- .  .+.|.....-..+..+...  +...+.+.|+|||..|++         ||..-..+.        
T Consensus       144 dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~d--T~DltgieWsPdg~~laV---------wd~~Leykv--------  204 (447)
T KOG4497|consen  144 DGQFCAILSRRDCKDYVQISSCKAWILLKEFKLD--TIDLTGIEWSPDGNWLAV---------WDNVLEYKV--------  204 (447)
T ss_pred             CCceeeeeecccHHHHHHHHhhHHHHHHHhcCCC--cccccCceECCCCcEEEE---------ecchhhhee--------
Confidence            55556555532 1  1222222222333344332  335678999999988775         442111000        


Q ss_pred             ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccc
Q 001311          650 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  729 (1102)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~  729 (1102)
                                                                                       ..|.           
T Consensus       205 -----------------------------------------------------------------~aYe-----------  208 (447)
T KOG4497|consen  205 -----------------------------------------------------------------YAYE-----------  208 (447)
T ss_pred             -----------------------------------------------------------------eeee-----------
Confidence                                                                             0000           


Q ss_pred             cccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCe
Q 001311          730 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  809 (1102)
Q Consensus       730 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i  809 (1102)
                              ..-.+..+.++|.++.+++|+.|+.+++.+--+-+.-...-.+.+.    -|+....+......  ...-..
T Consensus       209 --------~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~----~dp~~~~~~ke~~~--~~ql~~  274 (447)
T KOG4497|consen  209 --------RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSY----HDPTLHLLEKETFS--IVQLLH  274 (447)
T ss_pred             --------eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhc----cCchhhhhhhhhcc--hhhhcc
Confidence                    1134667788888888888888888887542111000000000000    00000000000000  001112


Q ss_pred             eEEEEecCCCeEEEEeCCeEEEEEcC-CCceeee------ecCCCCCeeEEEEecCCCcEEEEEeCC--CcEEEEEeecc
Q 001311          810 PCFALSKNDSYVMSASGGKISLFNMM-TFKTMAT------FMPPPPAATFLAFHPQDNNIIAIGMDD--SSIQIYNVRVD  880 (1102)
Q Consensus       810 ~~l~~s~d~~~las~sdg~I~iwd~~-~~~~~~~------~~~~~~~i~~l~~sp~d~~~lasg~~d--g~v~vwd~~~~  880 (1102)
                      .++.|.|..- =+.-....=.+|+.. +...+..      +......+.-++|++ |..++|+-.+.  ..+-+||+...
T Consensus       275 ~cLsf~p~~~-~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l  352 (447)
T KOG4497|consen  275 HCLSFTPTDL-EAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC-DSTYAATRNDKYPNALWLWDLQNL  352 (447)
T ss_pred             cccccCCCcc-ccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC-CceEEeeecCCCCceEEEEechhh
Confidence            3444444321 000000000112211 1111222      223345688899999 89999886543  47999999987


Q ss_pred             eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311          881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  958 (1102)
Q Consensus       881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  958 (1102)
                      ++...+. ...+|.+..|.|....|+.+.....+.+|.....     .....+...    ..|..+.|..+|..++..
T Consensus       353 ~l~avLi-Qk~piraf~WdP~~prL~vctg~srLY~W~psg~-----~~V~vP~~G----F~i~~l~W~~~g~~i~l~  420 (447)
T KOG4497|consen  353 KLHAVLI-QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP-----RVVGVPKKG----FNIQKLQWLQPGEFIVLC  420 (447)
T ss_pred             hhhhhhh-hccceeEEEeCCCCceEEEEcCCceEEEEcCCCc-----eEEecCCCC----ceeeeEEecCCCcEEEEE
Confidence            7655554 4567999999999989988887888999988762     233333222    478999999999998874

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.9e-15  Score=142.57  Aligned_cols=289  Identities=11%  Similarity=0.129  Sum_probs=196.9

Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      ..|.+-+++|.+++++++..+|.|.+..+..-.....             ...|+......  .+|..++..++|.  ..
T Consensus        11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa-------------~~~gk~~iv~e--qahdgpiy~~~f~--d~   73 (325)
T KOG0649|consen   11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSA-------------EPPGKLKIVPE--QAHDGPIYYLAFH--DD   73 (325)
T ss_pred             HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhcccc-------------CCCCCcceeec--cccCCCeeeeeee--hh
Confidence            3455667899999999999999999998754221110             11222222222  3499999999998  55


Q ss_pred             eEEEEeCCeEEEEEcCCCce------eeee--cC-----CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311          820 YVMSASGGKISLFNMMTFKT------MATF--MP-----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  886 (1102)
Q Consensus       820 ~las~sdg~I~iwd~~~~~~------~~~~--~~-----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l  886 (1102)
                      +|++++||.|+=|..+....      +.+.  .-     .-.+|+++-..|..+. ++.++.|+.++-||+++|+..+++
T Consensus        74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEE
Confidence            88899999999998754322      1111  11     2346999999994444 445557999999999999999999


Q ss_pred             ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC--CCCCCcEEEEccCCcEEEEEeCCeEE
Q 001311          887 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP--TAQSDTRVQFHQDQIHFLVVHETQLA  964 (1102)
Q Consensus       887 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~d~~i~  964 (1102)
                      +||++.|-++.--.....+.+|+.||++||||.++++...  .+........  +...-.-.+..-+..+|+++....+.
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~--~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ls  230 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVS--MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLS  230 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeE--EeccccChhhcCcccCceeEEEeccCceEEecCCCcee
Confidence            9999999999986666789999999999999999976432  2211111100  00111225566677899999888999


Q ss_pred             EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEec
Q 001311          965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1044 (1102)
Q Consensus       965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~ 1044 (1102)
                      +|++...++...+..   ..++..+.|.  .+.+++++....|.-|.+. |.+...+.      .+|+.  -+..+..-+
T Consensus       231 lwhLrsse~t~vfpi---pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~s~~--c~s~s~~~~  296 (325)
T KOG0649|consen  231 LWHLRSSESTCVFPI---PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIP------VESTA--CYSASWQTS  296 (325)
T ss_pred             EEeccCCCceEEEec---ccceeEeeee--cceEEEeccccceeeeeec-cEEEEecc------CCccc--eeeecccCC
Confidence            999999999988875   4578888885  4567888888889988865 34443333      12111  121123333


Q ss_pred             CCCCCEEEEEecCCcEEEEe
Q 001311         1045 PQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus      1045 p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
                      |  -++|..++..+.+.|+.
T Consensus       297 p--~k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  297 P--IKFISIAGFSNKLHILK  314 (325)
T ss_pred             c--eEEEEecccceeeeeee
Confidence            4  35666677777777764

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=4.2e-16  Score=156.41  Aligned_cols=305  Identities=18%  Similarity=0.264  Sum_probs=204.8

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC------CeeeEEeec-CCCCeEEEeeeecCCccEEEEEeCC
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN------GAKQYIFEG-HEAPVYSVCPHHKENIQFIFSTALD  520 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~------~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~s~d  520 (1102)
                      .+.+|.+.|+++.|+.+++  +|++|+.|..+++|++..      .+++..... |...|.|+.|.  ....++++|..+
T Consensus        51 D~~~H~GCiNAlqFS~N~~--~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~--~~N~~~~SG~~~  126 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDR--FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD--LENRFLYSGERW  126 (609)
T ss_pred             hhhhhccccceeeeccCCe--EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc--cCCeeEecCCCc
Confidence            4678999999999999988  899999999999999863      456665543 56889999984  334799999999


Q ss_pred             CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEE
Q 001311          521 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTS  599 (1102)
Q Consensus       521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~  599 (1102)
                      ++|...|+.+.+.+..+....                   ..+.+.-+..+|..+.|++.+.++.|.+||.+... .+..
T Consensus       127 ~~VI~HDiEt~qsi~V~~~~~-------------------~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~  187 (609)
T KOG4227|consen  127 GTVIKHDIETKQSIYVANENN-------------------NRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL  187 (609)
T ss_pred             ceeEeeecccceeeeeecccC-------------------cccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce
Confidence            999999999876655443221                   11245555666666789999999999999998655 3322


Q ss_pred             EcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccc
Q 001311          600 IDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAG  678 (1102)
Q Consensus       600 ~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  678 (1102)
                      +-.........++.|+| ...+|++.+..+.+-+||.+.....+....+...                            
T Consensus       188 ~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~----------------------------  239 (609)
T KOG4227|consen  188 VLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKG----------------------------  239 (609)
T ss_pred             eeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhcccc----------------------------
Confidence            22222233577899999 5667888888899999998765332221111000                            


Q ss_pred             cccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEee
Q 001311          679 LADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA  758 (1102)
Q Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  758 (1102)
                                                                            ++.  ....-.++.|+|+|+.+++.-
T Consensus       240 ------------------------------------------------------L~~--~~~~~M~~~~~~~G~Q~msiR  263 (609)
T KOG4227|consen  240 ------------------------------------------------------LPQ--ENTEWMGSLWSPSGNQFMSIR  263 (609)
T ss_pred             ------------------------------------------------------Ccc--cchhhhheeeCCCCCeehhhh
Confidence                                                                  000  111223466777777666554


Q ss_pred             cCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCc
Q 001311          759 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK  838 (1102)
Q Consensus       759 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~  838 (1102)
                      ....-.+||+                                    |.....-+.+..+.                 .|.
T Consensus       264 R~~~P~~~D~------------------------------------~S~R~~V~k~D~N~-----------------~GY  290 (609)
T KOG4227|consen  264 RGKCPLYFDF------------------------------------ISQRCFVLKSDHNP-----------------NGY  290 (609)
T ss_pred             ccCCCEEeee------------------------------------ecccceeEeccCCC-----------------Ccc
Confidence            4433333332                                    11111111111000                 011


Q ss_pred             eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-----c------------------eeeeeecccccccee
Q 001311          839 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----D------------------EVKSKLKGHSKRITG  895 (1102)
Q Consensus       839 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----~------------------~~~~~l~~h~~~V~~  895 (1102)
                      +      ....+.+++|..  ..-+++|+++-.|++|.+..     |                  +.+..|+||..-+..
T Consensus       291 ~------N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQ  362 (609)
T KOG4227|consen  291 C------NIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQ  362 (609)
T ss_pred             e------eeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccc
Confidence            0      112466788874  45699999999999998742     1                  134568999999999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          896 LAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      +.|+|...+|++.+....+++|.--
T Consensus       363 VRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  363 VRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eeecCCcceEeccchhhheeccccc
Confidence            9999999999999999999999643

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.3e-16  Score=158.38  Aligned_cols=198  Identities=13%  Similarity=0.180  Sum_probs=149.9

Q ss_pred             EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CCCeEEEEECCCeEEEEEcc
Q 001311          361 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYH  438 (1102)
Q Consensus       361 llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~las~~~d~~v~vwd~~  438 (1102)
                      .+|++-..|.|++||..+++.+.                   .+++|...++.++|..  ....+.+|+.||+|++||++
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~-------------------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLE-------------------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhh-------------------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            58888889999999999988776                   3788999999999988  56788899999999999999


Q ss_pred             CCceeeeEEEeeccc-cCEEEEEEcCCCCeeEEEEec----CCCcEEEEeCCCCee-eEEe-ecCCCCeEEEeeeecCCc
Q 001311          439 GGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCG----DDKTIKVWDATNGAK-QYIF-EGHEAPVYSVCPHHKENI  511 (1102)
Q Consensus       439 ~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~----~d~~i~vWd~~~~~~-~~~~-~~h~~~v~~v~~~~~~~~  511 (1102)
                      +......+ ...+|. .+-.|++..-.+.  ++++|.    .|-.|.+||++..+. +..+ ..|...|++++|+|+.. 
T Consensus       103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p-  178 (376)
T KOG1188|consen  103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP-  178 (376)
T ss_pred             cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC-
Confidence            87655433 345555 4667777665565  566654    466799999998776 5554 56999999999998654 


Q ss_pred             cEEEEEeCCCeEEEEEcCCCCC---eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEE
Q 001311          512 QFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF  588 (1102)
Q Consensus       512 ~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i  588 (1102)
                      ++|+|||.||-|.+||+.....   +...-.+...|..+.|..++-                    ..+.+-+...+..+
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y--------------------krI~clTH~Etf~~  238 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY--------------------KRIMCLTHMETFAI  238 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc--------------------ceEEEEEccCceeE
Confidence            7999999999999999976422   112222334455555555542                    34788888899999


Q ss_pred             EECCCcceEEEEc
Q 001311          589 WDMDSVQLLTSID  601 (1102)
Q Consensus       589 wd~~~~~~~~~~~  601 (1102)
                      |+++.+.+...+.
T Consensus       239 ~ele~~~~~~~~~  251 (376)
T KOG1188|consen  239 YELEDGSEETWLE  251 (376)
T ss_pred             EEccCCChhhccc
Confidence            9999988665554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.73  E-value=2.6e-16  Score=152.19  Aligned_cols=259  Identities=15%  Similarity=0.235  Sum_probs=187.5

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCC-------eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVG-------DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  414 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~-------~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  414 (1102)
                      ++.|.+.|+.++-+|..+.+|+|...+-       .+.||.+........  ..       .......+-..+-+.|.|+
T Consensus        59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~-------tlE~v~~Ldteavg~i~cv  129 (370)
T KOG1007|consen   59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SS-------TLECVASLDTEAVGKINCV  129 (370)
T ss_pred             hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cc-------hhhHhhcCCHHHhCceeeE
Confidence            4567899999999999988999876532       478888754322210  00       1111122233566799999


Q ss_pred             EEccCCCeEEEEECCCeEEEEEccCCcee-eeEE--EeeccccCEEEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCee
Q 001311          415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHL--EIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK  489 (1102)
Q Consensus       415 ~~spdg~~las~~~d~~v~vwd~~~~~~~-~~~~--~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~vWd~~~~~~  489 (1102)
                      .|.|++..||+-. |..|.+|+++.+..+ ....  .-.+|....++-+|+|  |+.  .+++. .|+++..||+++.++
T Consensus       130 ew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt-~d~tl~~~D~RT~~~  205 (370)
T KOG1007|consen  130 EWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATT-SDSTLQFWDLRTMKK  205 (370)
T ss_pred             EEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEe-CCCcEEEEEccchhh
Confidence            9999999999876 888999999987652 1111  1123566788889998  566  34544 478999999999888


Q ss_pred             eEEe-ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311          490 QYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  567 (1102)
Q Consensus       490 ~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  567 (1102)
                      ...+ ..|...|..+.|++... .+|++|+.||.|++||.+.. ..+..+..|..+|.++.|.|.-.             
T Consensus       206 ~~sI~dAHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hd-------------  271 (370)
T KOG1007|consen  206 NNSIEDAHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHD-------------  271 (370)
T ss_pred             hcchhhhhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccc-------------
Confidence            8776 46888999999876543 68999999999999999875 45678899999999999988765             


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCcc-----------------------------eEEEEcCCCCCCCcCeEEEcC-C
Q 001311          568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------------------------LLTSIDADGGLPASPRIRFNK-D  617 (1102)
Q Consensus       568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~v~~~~~s~-~  617 (1102)
                             +++++++.|..|.+|...+-.                             .+.++.  .+...|.+++|+. |
T Consensus       272 -------qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyd--ehEDSVY~~aWSsad  342 (370)
T KOG1007|consen  272 -------QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYD--EHEDSVYALAWSSAD  342 (370)
T ss_pred             -------eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccccc--ccccceEEEeeccCC
Confidence                   468888888888888654211                             112333  2345799999998 4


Q ss_pred             CCEEEEEECCCcEEEEEcc
Q 001311          618 GCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       618 ~~~l~~~~~dg~i~iwd~~  636 (1102)
                      .-.+++-+.||.+.|=.+.
T Consensus       343 PWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  343 PWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             CeeEEEeccCceEEeecCC
Confidence            5556677889999876553

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=2.5e-15  Score=151.14  Aligned_cols=241  Identities=14%  Similarity=0.203  Sum_probs=182.3

Q ss_pred             CCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001311          806 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  883 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~  883 (1102)
                      ...+..+.|..|...|..|+....++|+................|..+-|+.   .++|..+.+.  .+++++++.+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            4456777799999999999955578888776554333333344577777875   4666666554  5999999888777


Q ss_pred             eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E--eC
Q 001311          884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V--HE  960 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~--~d  960 (1102)
                      ..+. ....|.+|.+.  .+.|+++=.+. |.|||++.-+.     +.....-.+-...+.++.+++.+.++|. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mkl-----LhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMKL-----LHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEeccccee-----ehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            7765 45678888885  45666665554 99999998554     3222222121234566666667789998 3  67


Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCe-EEEEEcCCceeEEEeCCCcccCCCCCCCcccce
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1039 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 1039 (1102)
                      |.|.+||+.+.+.+..+.  .|.+.+.+++|++||.+|||+|+.|+ |||+.+.+|+.+..|+...+ +       +...
T Consensus       153 GdV~l~d~~nl~~v~~I~--aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~-------~~Iy  222 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNTIN--AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P-------VSIY  222 (391)
T ss_pred             ceEEEEEcccceeeeEEE--ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e-------eEEE
Confidence            899999999999998887  89999999999999999999999997 89999999999999983333 2       3344


Q ss_pred             EEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1040 VIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1040 ~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +++|+| |+.+|++.|..++|+||++++..
T Consensus       223 SL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  223 SLSFSP-DSQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence            999999 68999999999999999998766

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.73  E-value=7.6e-18  Score=184.62  Aligned_cols=253  Identities=18%  Similarity=0.307  Sum_probs=191.3

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      +.+.++++|...|.|+.|...|.+ +++|+.|..|+||..+++.++.                   ...||.+.|+.++.
T Consensus       181 k~ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lA-------------------s~rGhs~ditdlav  240 (1113)
T KOG0644|consen  181 KNIKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLA-------------------SCRGHSGDITDLAV  240 (1113)
T ss_pred             HHHHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhc-------------------cCCCCccccchhcc
Confidence            456778899999999999999997 9999999999999999998887                   48999999999999


Q ss_pred             ccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE---e
Q 001311          417 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---F  493 (1102)
Q Consensus       417 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~---~  493 (1102)
                      +.+..++|+++.|..|++|.+.++..+.   .+.||++.|++|+|+|-      .+.+.||++++||.+-.-.+..   +
T Consensus       241 s~~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~  311 (1113)
T KOG0644|consen  241 SSNNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPL  311 (1113)
T ss_pred             chhhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCC
Confidence            9999999999999999999999988665   58899999999999984      4778999999999872111111   1


Q ss_pred             ec-CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311          494 EG-HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  572 (1102)
Q Consensus       494 ~~-h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  572 (1102)
                      .. ...-+.++.|  ..++..+.|++.|+.-..|........      ...+.-+..+.+                    
T Consensus       312 ~~~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~~------~~~lif~t~ssd--------------------  363 (1113)
T KOG0644|consen  312 KFTEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAWR------SNLLIFVTRSSD--------------------  363 (1113)
T ss_pred             Ccccccceeeeec--cccccccccccCCcccccchhhHhhhh------ccceEEEecccc--------------------
Confidence            11 1233444444  455677999999999888865431110      000000011111                    


Q ss_pred             CCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccc
Q 001311          573 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENL  648 (1102)
Q Consensus       573 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  648 (1102)
                      ...+.+++-.+..+++|++.+|.+.+.+.++.+  .+.-+.++| +.....+++.||...|||+-.+........+|
T Consensus       364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd--~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh  438 (1113)
T KOG0644|consen  364 LSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSD--EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH  438 (1113)
T ss_pred             ccccceeeeeeeEeeeeecccchhhhhhccccc--ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc
Confidence            013466677788999999999999999887766  566799999 55666688999999999998884444444443

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=9.6e-16  Score=144.61  Aligned_cols=253  Identities=15%  Similarity=0.201  Sum_probs=174.0

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  427 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  427 (1102)
                      .|.+-+++|.+++ |+.|..+|+|.+..+++--.-..         ...-........+|.++|+.++|.  ..+|++|+
T Consensus        12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g   79 (325)
T KOG0649|consen   12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG   79 (325)
T ss_pred             HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence            4566789999996 99999999999999865211110         000011111357999999999998  55677765


Q ss_pred             CCCeEEEEEccCCcee---eeEEE--eeccc-----cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311          428 SRHIVQIYSYHGGDEV---RQHLE--IDAHV-----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       428 ~d~~v~vwd~~~~~~~---~~~~~--l~~h~-----~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      . |.|+=|.+......   +...+  ...|.     ..|+++-..|...  -++.++.|+.++-||+++|+..++++||+
T Consensus        80 d-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHt  156 (325)
T KOG0649|consen   80 D-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHT  156 (325)
T ss_pred             C-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence            4 99999988653321   11100  11222     3589999998877  46666789999999999999999999999


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      +.|.++.--  .....+++|+.||++|+||.++.+....+..-...           ..+..+-..-|.+++.+  ..++
T Consensus       157 DYvH~vv~R--~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~-----------~~lRp~~g~wigala~~--edWl  221 (325)
T KOG0649|consen  157 DYVHSVVGR--NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP-----------NLLRPDWGKWIGALAVN--EDWL  221 (325)
T ss_pred             ceeeeeeec--ccCcceeecCCCccEEEEeccccceeEEeccccCh-----------hhcCcccCceeEEEecc--CceE
Confidence            999998742  22357999999999999999998776655332110           11111122233344333  3567


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                      ++|+ ...+.+|++++.++...+....+   +..+.|.  ...+++++..+.|.-|.+.
T Consensus       222 vCGg-Gp~lslwhLrsse~t~vfpipa~---v~~v~F~--~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  222 VCGG-GPKLSLWHLRSSESTCVFPIPAR---VHLVDFV--DDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             EecC-CCceeEEeccCCCceEEEecccc---eeEeeee--cceEEEeccccceeeeeec
Confidence            6655 45799999999999888876655   6667774  4567777777788888654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=1.9e-17  Score=181.51  Aligned_cols=281  Identities=17%  Similarity=0.250  Sum_probs=201.4

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  527 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd  527 (1102)
                      .+.||...|+|+.|...|.  ++++|+.|..++||.++++.++..+.||.+.|+.++.+  .+..++++++.|..|++|.
T Consensus       185 rLlgH~naVyca~fDrtg~--~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs--~~n~~iaaaS~D~vIrvWr  260 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGR--YIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVS--SNNTMIAAASNDKVIRVWR  260 (1113)
T ss_pred             HHHhhhhheeeeeeccccc--eEeecCccceeeeeeccchhhhccCCCCccccchhccc--hhhhhhhhcccCceEEEEe
Confidence            4789999999999999999  89999999999999999999999999999999999874  4447899999999999999


Q ss_pred             cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC---C
Q 001311          528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD---G  604 (1102)
Q Consensus       528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~  604 (1102)
                      +..+..+..+.+|.+.|++++|+|-                         .+.+.||++++||.+- .........   .
T Consensus       261 l~~~~pvsvLrghtgavtaiafsP~-------------------------~sss~dgt~~~wd~r~-~~~~y~prp~~~~  314 (1113)
T KOG0644|consen  261 LPDGAPVSVLRGHTGAVTAIAFSPR-------------------------ASSSDDGTCRIWDARL-EPRIYVPRPLKFT  314 (1113)
T ss_pred             cCCCchHHHHhccccceeeeccCcc-------------------------ccCCCCCceEeccccc-cccccCCCCCCcc
Confidence            9999999999999999988888873                         4667899999999871 111110000   0


Q ss_pred             CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccc
Q 001311          605 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  684 (1102)
Q Consensus       605 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1102)
                      ....+.++.|-..+..+++++.|+.                                                       
T Consensus       315 ~~~~~~s~~~~~~~~~f~Tgs~d~e-------------------------------------------------------  339 (1113)
T KOG0644|consen  315 EKDLVDSILFENNGDRFLTGSRDGE-------------------------------------------------------  339 (1113)
T ss_pred             cccceeeeeccccccccccccCCcc-------------------------------------------------------
Confidence            0001112222222222222222222                                                       


Q ss_pred             cccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEE
Q 001311          685 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  764 (1102)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~  764 (1102)
                                                   -+.|.+..                       +++                 
T Consensus       340 -----------------------------a~n~e~~~-----------------------l~~-----------------  350 (1113)
T KOG0644|consen  340 -----------------------------ARNHEFEQ-----------------------LAW-----------------  350 (1113)
T ss_pred             -----------------------------cccchhhH-----------------------hhh-----------------
Confidence                                         22222110                       000                 


Q ss_pred             eeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC-CeEEEEe-CCeEEEEEcCCCceeee
Q 001311          765 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMAT  842 (1102)
Q Consensus       765 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~las~s-dg~I~iwd~~~~~~~~~  842 (1102)
                                                              +...+.-+..+.|- .+.+++- +-.+.+|++.+|+..+.
T Consensus       351 ----------------------------------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~  390 (1113)
T KOG0644|consen  351 ----------------------------------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHN  390 (1113)
T ss_pred             ----------------------------------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhh
Confidence                                                    00001111111111 2334444 67799999999999999


Q ss_pred             ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee-eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311          843 FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       843 ~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                      +.+|...+..+.++|-+.+...+++.||...|||+-.|..++. +.+|. .+..-+||+||..++....-|.+.|.....
T Consensus       391 l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  391 LMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             hcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEeccCC
Confidence            9999999999999997778888999999999999988766544 35554 456679999999999988889999987665


Q ss_pred             Cc
Q 001311          922 WE  923 (1102)
Q Consensus       922 ~~  923 (1102)
                      ++
T Consensus       470 s~  471 (1113)
T KOG0644|consen  470 SK  471 (1113)
T ss_pred             Cc
Confidence            44

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=7.2e-17  Score=167.27  Aligned_cols=322  Identities=16%  Similarity=0.200  Sum_probs=230.0

Q ss_pred             EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311          447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  525 (1102)
Q Consensus       447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~  525 (1102)
                      ..|.+|.+.|..|.|+..|.  .|++|+.|..|.+||+.+++....+ .||...|....|-+..+...+++++.||.|++
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd--~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGD--VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hcccCCCCccceeeecccCc--eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            35889999999999999999  8999999999999999999887766 57988888888877777789999999999998


Q ss_pred             EEcCCCCCe---eeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC
Q 001311          526 WLYDNLGSR---VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       526 wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  602 (1102)
                      =.+...+..   ..+..|.+.|..++.-|+..                    .-|+++++|+.+.-+|++.+.....+..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--------------------~~f~S~geD~~v~~~Dlr~~~pa~~~~c  273 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSP--------------------KPFLSCGEDAVVFHIDLRQDVPAEKFVC  273 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCC--------------------CcccccccccceeeeeeccCCccceeee
Confidence            877654332   34456667777777776665                    4589999999999999988765544432


Q ss_pred             CCC-C---CCcCeEEEcCCC-CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcc
Q 001311          603 DGG-L---PASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSA  677 (1102)
Q Consensus       603 ~~~-~---~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  677 (1102)
                      ... .   .....++..|.. ..+++++.|..+++||.+.-.+.  ...+   .+.        .|.+..          
T Consensus       274 r~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e--~~n~---~~~--------~f~p~h----------  330 (559)
T KOG1334|consen  274 READEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKE--ENNG---VLD--------KFCPHH----------  330 (559)
T ss_pred             eccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhc--cccc---hhh--------hcCCcc----------
Confidence            111 1   245678888854 48899999999999986543110  0000   000        011000          


Q ss_pred             ccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEe
Q 001311          678 GLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILAL  757 (1102)
Q Consensus       678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  757 (1102)
                                                                        +.      ......|++++|+.++.-++++
T Consensus       331 --------------------------------------------------l~------~d~~v~ITgl~Ysh~~sElLaS  354 (559)
T KOG1334|consen  331 --------------------------------------------------LV------EDDPVNITGLVYSHDGSELLAS  354 (559)
T ss_pred             --------------------------------------------------cc------ccCcccceeEEecCCccceeee
Confidence                                                              00      0134679999999999989999


Q ss_pred             ecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE-ecCCCeEEEEeC-CeEEEEEcC
Q 001311          758 ASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL-SKNDSYVMSASG-GKISLFNMM  835 (1102)
Q Consensus       758 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~-s~d~~~las~sd-g~I~iwd~~  835 (1102)
                      ..|-.|+++.-..+..+    ......++      .......+++......|..+-| -|...|+++|+| |.|.||+-.
T Consensus       355 YnDe~IYLF~~~~~~G~----~p~~~s~~------~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  355 YNDEDIYLFNKSMGDGS----EPDPSSPR------EQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             ecccceEEeccccccCC----CCCCCcch------hhccchhhcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence            99999999854332210    00000000      0111111333223344666654 588999999997 899999999


Q ss_pred             CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          836 TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       836 ~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                      +++.++-+.+...-|+||.-+| ---+||+.+-|..|+||.-.+.
T Consensus       425 t~eii~~MegDr~VVNCLEpHP-~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  425 TGEIIRFMEGDRHVVNCLEPHP-HLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             hhHHHHHhhcccceEeccCCCC-CCchhhccCCccceeeecCCcc
Confidence            9999999988777899999999 6779999999999999987543

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.70  E-value=2.6e-16  Score=166.58  Aligned_cols=277  Identities=18%  Similarity=0.278  Sum_probs=183.5

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC--------CeeeEEeecCCCCeEEEeeeecCCccEEEEEeC
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN--------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL  519 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~--------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~  519 (1102)
                      ++..|.+.|.+++|.+-..  .|++++.|+++++|+++.        -+++.+|.+|.++|.|+++  ..++..+++|+.
T Consensus       289 tl~s~~d~ir~l~~~~sep--~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v--~~n~~~~ysgg~  364 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEP--VLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVV--PSNGEHCYSGGI  364 (577)
T ss_pred             eeecchhhhhhhhcCCCCC--eEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEe--cCCceEEEeecc
Confidence            4778999999999999888  799999999999999932        2567899999999999987  567789999999


Q ss_pred             CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q 001311          520 DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS  599 (1102)
Q Consensus       520 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  599 (1102)
                      ||+|+.|++........  .+.  ...      ....+.||.+ .++.++++....+|++++.||+++.|+...... .+
T Consensus       365 Dg~I~~w~~p~n~dp~d--s~d--p~v------l~~~l~Ghtd-avw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~  432 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDD--SYD--PSV------LSGTLLGHTD-AVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CT  432 (577)
T ss_pred             CceeeeeccCCCCCccc--ccC--cch------hccceecccc-ceeeeeecccccceeeecCCceEEeeccCCcCc-cc
Confidence            99999997753221110  000  000      1133455554 677778888888899999999999999876655 33


Q ss_pred             EcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccc
Q 001311          600 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  679 (1102)
Q Consensus       600 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1102)
                      +........-.++.+-...  ++....+.....+++.+. ...                                     
T Consensus       433 f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~-ev~-------------------------------------  472 (577)
T KOG0642|consen  433 FGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDM-EVV-------------------------------------  472 (577)
T ss_pred             cCCccccCCcceEeeccch--hHhhhhhcccccccchhh-hhh-------------------------------------
Confidence            3322211112233332211  111111111111111110 000                                     


Q ss_pred             ccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec
Q 001311          680 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS  759 (1102)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~  759 (1102)
                                                                                     ..+.+.+.       +.
T Consensus       473 ---------------------------------------------------------------s~~~~~~s-------~~  482 (577)
T KOG0642|consen  473 ---------------------------------------------------------------SDLLIFES-------SA  482 (577)
T ss_pred             ---------------------------------------------------------------hheeeccc-------cC
Confidence                                                                           00000000       00


Q ss_pred             CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCc
Q 001311          760 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK  838 (1102)
Q Consensus       760 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~  838 (1102)
                      ....+                                        ....+.-+...|.+.+.+++. |+.|+++|..++.
T Consensus       483 ~~~~~----------------------------------------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~  522 (577)
T KOG0642|consen  483 SPGPR----------------------------------------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK  522 (577)
T ss_pred             CCccc----------------------------------------ccCccceEEecCCCCeeEecccCCceecccccccc
Confidence            00000                                        122344556667777777777 8999999999999


Q ss_pred             eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311          839 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  891 (1102)
Q Consensus       839 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  891 (1102)
                      .+.....|...++++++.| +|-+|++|+.||.|++|.+....++.....|..
T Consensus       523 ~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r~  574 (577)
T KOG0642|consen  523 ILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWKLDVKTCVLESTAHRK  574 (577)
T ss_pred             cchheeeccceecceeecC-CCceEEeecCCceeehhhccchheeeccccccc
Confidence            9999999999999999999 999999999999999999988777777666653

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.69  E-value=3.3e-14  Score=148.93  Aligned_cols=477  Identities=12%  Similarity=0.108  Sum_probs=273.4

Q ss_pred             CCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEE------cCCCCeeEEEEecCCCcE
Q 001311          406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF------SHPNKQLCVITCGDDKTI  479 (1102)
Q Consensus       406 ~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~------s~d~~~~~l~s~~~d~~i  479 (1102)
                      .|..-|.|+.|+.+...+.+++.+..+.-||+.+... ..   +.-....|...-+      ...+..-.++.++.||.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~---~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf   87 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EV---AKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF   87 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhh-hh---hhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence            4666778999999888888776666555566654332 11   1111111111111      001111157888899999


Q ss_pred             EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      .+-+ +.++.-+.+..|.+.+.+-.|+  ++|.-|++++.||.|++|.-. +-...++......|.+++|.|+..     
T Consensus        88 ~il~-k~~rVE~sv~AH~~A~~~gRW~--~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q~~~~v~c~~W~p~S~-----  158 (737)
T KOG1524|consen   88 VILN-KSARVERSISAHAAAISSGRWS--PDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQNEESIRCARWAPNSN-----  158 (737)
T ss_pred             EEec-ccchhhhhhhhhhhhhhhcccC--CCCceeeeecCCceEEEEecc-chHHHHHhhcCceeEEEEECCCCC-----
Confidence            9998 8888888999999999998885  455679999999999999643 233333334445566666666554     


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  639 (1102)
                                     +.+++.  .+.+.|=-+.....+-..+.|.+  -|.++.|++....+++|+.|-..++||.... 
T Consensus       159 ---------------~vl~c~--g~h~~IKpL~~n~k~i~WkAHDG--iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-  218 (737)
T KOG1524|consen  159 ---------------SIVFCQ--GGHISIKPLAANSKIIRWRAHDG--LVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-  218 (737)
T ss_pred             ---------------ceEEec--CCeEEEeecccccceeEEeccCc--EEEEeecCccccceeecCCceeEEeecccCc-
Confidence                           223333  34566656665555666666655  6899999999999999999999999995322 


Q ss_pred             cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311          640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  719 (1102)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~  719 (1102)
                      .++                     ..                                                      
T Consensus       219 ~Lf---------------------~S------------------------------------------------------  223 (737)
T KOG1524|consen  219 NLF---------------------TS------------------------------------------------------  223 (737)
T ss_pred             ccc---------------------cC------------------------------------------------------
Confidence            110                     00                                                      


Q ss_pred             ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311          720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  799 (1102)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  799 (1102)
                                      ..|..+|++++|.|+ +.++.++.+ ++++=.                                
T Consensus       224 ----------------~~~ey~ITSva~npd-~~~~v~S~n-t~R~~~--------------------------------  253 (737)
T KOG1524|consen  224 ----------------AAEEYAITSVAFNPE-KDYLLWSYN-TARFSS--------------------------------  253 (737)
T ss_pred             ----------------Chhccceeeeeeccc-cceeeeeee-eeeecC--------------------------------
Confidence                            237889999999999 444444333 343211                                


Q ss_pred             cCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC-------Cceee------ee----------cCCCCCeeEEEE
Q 001311          800 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-------FKTMA------TF----------MPPPPAATFLAF  855 (1102)
Q Consensus       800 ~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~-------~~~~~------~~----------~~~~~~i~~l~~  855 (1102)
                          ...+.|..++||+||..++.|. .|.+.+-.+-.       ++...      +.          -.....|...++
T Consensus       254 ----p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d~LE~p~rv~k~sL  329 (737)
T KOG1524|consen  254 ----PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQDILEFPQRVVKFSL  329 (737)
T ss_pred             ----CCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHHHhhCccceeeeee
Confidence                1567799999999999999988 67654432211       11100      00          012334555554


Q ss_pred             ecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCC
Q 001311          856 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG  935 (1102)
Q Consensus       856 sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  935 (1102)
                      .-   .+|+++. ...|++|.-......-.+.+....+.-+.-+ ..-+++  ....+|.++..++......    .+.|
T Consensus       330 ~Y---~hLvvaT-s~qvyiys~knwntpiiidgre~tr~lieq~-ek~fli--~dgsSi~lytyegR~~~np----~~Pg  398 (737)
T KOG1524|consen  330 GY---GHLVVAT-SLQVYIYSEKNWNTPIIIDGREDTRNLIEQG-EKYFLI--LDGSSIWLYTYEGRLHLNP----RYPG  398 (737)
T ss_pred             ce---eEEEEEe-ccEEEEEecCCccCcEEEeccccchhHhhhh-hhheEE--ecCcEEEEEEecCceecCC----CCCC
Confidence            43   3444443 3478888766544444444444433222111 111222  2233566666655221111    0111


Q ss_pred             CCCCCCCCcEEEEccCCcEEEE---EeCCeEEEEEc-CCceEeeeeccCCCCCCeeEEEEcC----CCcEEEEEeCCCeE
Q 001311          936 RTPTAQSDTRVQFHQDQIHFLV---VHETQLAIFET-TKLECVKQWVPRESSAPITHATFSC----DSQLVYACFLDATV 1007 (1102)
Q Consensus       936 ~~~~~~~v~~~~~spdg~~l~~---~~d~~i~iwd~-~~~~~~~~~~~~~h~~~v~~l~~sp----d~~~l~s~s~Dg~I 1007 (1102)
                      ...  .....-..|-....|+.   ++...+.+||. .+|+....-..-.|...|..++...    +.+.++.-...+.+
T Consensus       399 ~~~--dlL~~rtlsLandtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl  476 (737)
T KOG1524|consen  399 SQI--DLLTWRTLSLANDTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDL  476 (737)
T ss_pred             ccc--ccccceeeecccceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcE
Confidence            110  01111122222334444   23456788888 6776544322113566676666643    55667777777777


Q ss_pred             EEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1008 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1008 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +|=.+.+.-...++.     .-|   .-|.  .++|+  |-.-+++|-.|+.+.||-.++.-
T Consensus       477 ~ItsvKrfgkee~I~-----KiG---TmVh--tLawn--dttNiLcglqDt~fsVWy~pn~v  526 (737)
T KOG1524|consen  477 FITSVKRFGKEEEIY-----KIG---TMVH--TLAWN--DTTNILCGLQDTCFSVWYYPNEV  526 (737)
T ss_pred             EEEeehhcCchhhhh-----hhh---hhhh--hhhhc--cccceeeeeccceEEEEEcCCcc
Confidence            775543321111111     111   0022  67887  45678899999999999986643

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=5.3e-15  Score=166.84  Aligned_cols=259  Identities=15%  Similarity=0.179  Sum_probs=174.0

Q ss_pred             ceEEEEEcc--CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311          741 KISRLIFTN--SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  818 (1102)
Q Consensus       741 ~i~~~~~s~--~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~  818 (1102)
                      .|+.+.+-+  |...+++++.||.|+||+--....      ....-+.-|..-++.+..       ..+.-.-+.|....
T Consensus      1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~------~~~eLVTaw~~Ls~~~~~-------~r~~~~v~dWqQ~~ 1177 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKW------KKPELVTAWSSLSDQLPG-------ARGTGLVVDWQQQS 1177 (1387)
T ss_pred             ccceeeeecccchhheeeeccCceEEEeccccccc------CCceeEEeeccccccCcc-------CCCCCeeeehhhhC
Confidence            444555433  344677777888888886311100      000012233333333222       11112345666655


Q ss_pred             CeEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc---eeeeeecccccc-
Q 001311          819 SYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGHSKR-  892 (1102)
Q Consensus       819 ~~las~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h~~~-  892 (1102)
                      .+|.+++ -..|+|||...-.+...+.. ....|+++.-+-..|++++.|..||.|++||.+..   ..+...+.|+.. 
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence            5666655 57899999988777776653 34457887766556899999999999999998763   356677889887 


Q ss_pred             -ceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001311          893 -ITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  970 (1102)
Q Consensus       893 -V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~  970 (1102)
                       |..+.+-+.|- .|++|+.||.|++||+..........+..   +....+..+++..+++...+|+|+.+.|+||++..
T Consensus      1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~---~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA---HWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSG 1334 (1387)
T ss_pred             cceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee---ccccCccceeeeeccCCCeeeecCcceEEEEecCh
Confidence             99999988764 49999999999999998843222111111   11111247999999999999998779999999864


Q ss_pred             ceEeeeeccC-----CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311          971 LECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus       971 ~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
                      .+ +..+...     ...+.+.|++|.|-.-+||+|+.|.+|.||..+...
T Consensus      1335 ~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            33 3332221     125678999999999999999999999999877654

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=4.6e-16  Score=161.35  Aligned_cols=275  Identities=12%  Similarity=0.156  Sum_probs=205.0

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--C
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  419 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d  419 (1102)
                      +-.|.+.|..|.|+..|.. |++|+.|..|.+||+..++....                  ...||...|....|-|  +
T Consensus       138 L~~H~GcVntV~FN~~Gd~-l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~  198 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDV-LASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSG  198 (559)
T ss_pred             ccCCCCccceeeecccCce-eeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCC
Confidence            3459999999999999994 99999999999999998877654                  4789999999999998  6


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe---ecC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGH  496 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~---~~h  496 (1102)
                      .+-+++++.||.|++=.+.....+.....+..|.++|.-++.-|+... .|.+++.|+.+.-.|++.+.....+   ..+
T Consensus       199 d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~  277 (559)
T KOG1334|consen  199 DRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREAD  277 (559)
T ss_pred             CcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccC
Confidence            678999999999999887655445545568889999999999999887 7999999999999999987654433   223


Q ss_pred             CC---CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311          497 EA---PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  573 (1102)
Q Consensus       497 ~~---~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  573 (1102)
                      ..   ...+++..+.. ...+++++.|..+++||.+.-.....    .+.+.  .|.|.   .+.......|++++++.+
T Consensus       278 ~~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~----n~~~~--~f~p~---hl~~d~~v~ITgl~Ysh~  347 (559)
T KOG1334|consen  278 EKERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEEN----NGVLD--KFCPH---HLVEDDPVNITGLVYSHD  347 (559)
T ss_pred             CccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccc----cchhh--hcCCc---cccccCcccceeEEecCC
Confidence            33   34566665543 35899999999999999875332210    00011  11111   111233346788888877


Q ss_pred             CCEEEEEeCCCeEEEEECCC--c----------ceEEE-EcCCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCCc
Q 001311          574 KNRFLAAGDDFSIKFWDMDS--V----------QLLTS-IDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       574 ~~~l~~~~~dg~i~iwd~~~--~----------~~~~~-~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~  639 (1102)
                      +.-+++...|-.|++++-.-  |          ..+.. +++|.....|.++-| .|...++++|+.-|.|.||+-.++ 
T Consensus       348 ~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-  426 (559)
T KOG1334|consen  348 GSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-  426 (559)
T ss_pred             ccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-
Confidence            77788888888899996432  2          12233 677777777888886 568899999999999999998887 


Q ss_pred             cceeeccc
Q 001311          640 RLLRTFEN  647 (1102)
Q Consensus       640 ~~~~~~~~  647 (1102)
                      ++++.+++
T Consensus       427 eii~~Meg  434 (559)
T KOG1334|consen  427 EIIRFMEG  434 (559)
T ss_pred             HHHHHhhc
Confidence            66665554

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.67  E-value=1.7e-14  Score=140.01  Aligned_cols=243  Identities=16%  Similarity=0.228  Sum_probs=175.9

Q ss_pred             CCCCeeEEEEecCCC-----eEEEEeCCeEEEEEcCC--Cce--eeee-----cCCCCCeeEEEEecCCCcEEEEEeCCC
Q 001311          805 PEEAVPCFALSKNDS-----YVMSASGGKISLFNMMT--FKT--MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDS  870 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~-----~las~sdg~I~iwd~~~--~~~--~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg  870 (1102)
                      |..+++.+.|.|+.+     +||+ ++..+|+|.+..  .+.  ...+     ..+..++++..|..-+.++|.+.+-|-
T Consensus        95 ~~YP~tK~~wiPd~~g~~pdlLAT-s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT  173 (364)
T KOG0290|consen   95 HPYPVTKLMWIPDSKGVYPDLLAT-SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT  173 (364)
T ss_pred             CCCCccceEecCCccccCcchhhc-ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence            889999999999874     4444 456799999873  221  1112     234568999999988899999999999


Q ss_pred             cEEEEEeecce---eeeeeccccccceeEEEecCC-CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEE
Q 001311          871 SIQIYNVRVDE---VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  946 (1102)
Q Consensus       871 ~v~vwd~~~~~---~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  946 (1102)
                      +-.|||++++.   ...+|-+|..+|..|+|..++ +.+|++|.||.||+||+...+-...    +.+.. .+..+...+
T Consensus       174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI----IYE~p-~~~~pLlRL  248 (364)
T KOG0290|consen  174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI----IYEDP-SPSTPLLRL  248 (364)
T ss_pred             eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE----EecCC-CCCCcceee
Confidence            99999999863   467789999999999999865 5789999999999999987442111    11111 112467888


Q ss_pred             EEcc-CCcEEEE-E-eCCeEEEEEcCCc-eEeeeeccCCCCCCeeEEEEcCC-CcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311          947 QFHQ-DQIHFLV-V-HETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       947 ~~sp-dg~~l~~-~-~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~spd-~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
                      +|++ |-+++|+ + ....|.|.|++.- ..+..+  .+|.+.|+.++|.|. ...|.+|++|..+.|||+...-.-...
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L--~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~  326 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARL--RNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGE  326 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehh--hcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCC
Confidence            8887 5677887 4 5568999999753 333333  489999999999995 457999999999999999765331111


Q ss_pred             CC-CcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEE
Q 001311         1022 NP-SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHV 1062 (1102)
Q Consensus      1022 ~~-~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~v 1062 (1102)
                      .+ ..|.    ..++|.  .+.|++..++.++.+. ++++.+
T Consensus       327 dPilay~----a~~EVN--qi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  327 DPILAYT----AGGEVN--QIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             Cchhhhh----ccceee--eeeecccCCCEEEEEe-cCeeeE
Confidence            11 1122    233466  8999988888888876 444443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.67  E-value=6.7e-15  Score=165.38  Aligned_cols=263  Identities=20%  Similarity=0.268  Sum_probs=189.8

Q ss_pred             cceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311          338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       338 ~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      .-...+.-...|+|++|+|....+++.|..+|.|.+||+..+.....             .........|..+|+.+.|-
T Consensus       234 ~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  234 TPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             CceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEe
Confidence            34445667889999999999998999999999999999987765210             01111456899999999998


Q ss_pred             cCCC--eEEEEECCCeEEEEEccCCceeeeEEEee---------ccccCEEEEEEcCCCCeeEEEEecCCCcEEE---Ee
Q 001311          418 PDGS--LFGVAYSRHIVQIYSYHGGDEVRQHLEID---------AHVGGVNDIAFSHPNKQLCVITCGDDKTIKV---WD  483 (1102)
Q Consensus       418 pdg~--~las~~~d~~v~vwd~~~~~~~~~~~~l~---------~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v---Wd  483 (1102)
                      .+-.  -+++++.||.|..|+++.-........+.         .-...+++++|.+.... .++.|+.+|.|..   ++
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g  379 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKG  379 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccC
Confidence            7544  49999999999999876432211100010         11246899999988776 6888999999877   33


Q ss_pred             CCCCe-----eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcC-CCCCeeeecCCCCeeeEEEEccCCceee
Q 001311          484 ATNGA-----KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       484 ~~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      .+.+.     .+..+..|.++|+++.+++-.. ..+.+++ |-+|++|.-. ....+..+..+...+.+++|||-..   
T Consensus       380 ~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp---  454 (555)
T KOG1587|consen  380 YTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP---  454 (555)
T ss_pred             CcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCc---
Confidence            33222     2335567899999998866543 3444554 9999999887 5566666666666677777777654   


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc--eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ--LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                                       ..|+++..||.|.+||+....  ++.+....  ....+.+.|++.|+.|++|...|.+++|++
T Consensus       455 -----------------avF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l  515 (555)
T KOG1587|consen  455 -----------------AVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKL  515 (555)
T ss_pred             -----------------eEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence                             357888899999999997544  33333323  335667888889999999999999999998


Q ss_pred             cCC
Q 001311          636 SDG  638 (1102)
Q Consensus       636 ~~~  638 (1102)
                      ...
T Consensus       516 ~~~  518 (555)
T KOG1587|consen  516 SES  518 (555)
T ss_pred             Cch
Confidence            644

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.66  E-value=8.8e-15  Score=141.97  Aligned_cols=253  Identities=16%  Similarity=0.260  Sum_probs=184.9

Q ss_pred             eccCCCCeeEEEEecCCC----eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311          342 TLNQGSSPMSMDFHPVQQ----TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~----~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      .+.|.-+++.+.|.||..    .||||.+  ..+++|.+...+.....          ...+....-..+..++++..|+
T Consensus        92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~----------~~~L~~~kns~~~aPlTSFDWn  159 (364)
T KOG0290|consen   92 NFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVEL----------QSVLNNNKNSEFCAPLTSFDWN  159 (364)
T ss_pred             CCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceeh----------hhhhccCcccccCCcccccccc
Confidence            367999999999999873    3577655  78999999742211110          0011111234567799999999


Q ss_pred             c-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe---
Q 001311          418 P-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---  493 (1102)
Q Consensus       418 p-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~---  493 (1102)
                      . |-++|.+.+-|-+..|||++++..-.....|-.|...|..|+|...+.+ ++++.|.||+||++|++..+--..+   
T Consensus       160 e~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~  238 (364)
T KOG0290|consen  160 EVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYED  238 (364)
T ss_pred             cCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecC
Confidence            8 8899999999999999999997431122247789999999999998877 8999999999999999876543333   


Q ss_pred             ecCCCCeEEEeeeecCCccEEEEEeCC-CeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311          494 EGHEAPVYSVCPHHKENIQFIFSTALD-GKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  571 (1102)
Q Consensus       494 ~~h~~~v~~v~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  571 (1102)
                      .....+...++|+. .+-+++++-..| ..|.+-|++... ....+..|...|..++|.|...                 
T Consensus       239 p~~~~pLlRLswnk-qDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~-----------------  300 (364)
T KOG0290|consen  239 PSPSTPLLRLSWNK-QDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS-----------------  300 (364)
T ss_pred             CCCCCcceeeccCc-CCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC-----------------
Confidence            22234566678764 444678877665 568899998764 4567889999999999998876                 


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCcce------EEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEE
Q 001311          572 TTKNRFLAAGDDFSIKFWDMDSVQL------LTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       572 ~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i  632 (1102)
                         ..++++|+|..+-+||+...-.      +..+.   ....|+.+.|++ .+.+++++.. +.+.+
T Consensus       301 ---~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  301 ---SHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             ---ceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence               6799999999999999975321      22222   234699999997 6778887764 34443

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.65  E-value=4.7e-14  Score=158.64  Aligned_cols=285  Identities=15%  Similarity=0.165  Sum_probs=190.0

Q ss_pred             CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee--eEE----eecCCCCeEEE
Q 001311          430 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK--QYI----FEGHEAPVYSV  503 (1102)
Q Consensus       430 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~--~~~----~~~h~~~v~~v  503 (1102)
                      +.+.||+++......  ..+ .-...|.|++|+|.... +++.|..+|.|.+||++.+..  ...    ...|..++..+
T Consensus       222 ~~~~vW~~~~p~~Pe--~~~-~~~s~v~~~~f~p~~p~-ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPE--LVL-ESPSEVTCLKFCPFDPN-LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             ceEEEEecCCCCCce--EEE-ecCCceeEEEeccCCcc-eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            479999998863222  223 34678999999999887 789999999999999997765  222    23588889999


Q ss_pred             eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC
Q 001311          504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  583 (1102)
Q Consensus       504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  583 (1102)
                      .|.....+.-+++++.||.|..|+++........                                       +....  
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~---------------------------------------~~~~~--  336 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG---------------------------------------LLLES--  336 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhh---------------------------------------ccccc--
Confidence            8877665566888888999999976643221100                                       00000  


Q ss_pred             CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCC
Q 001311          584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  662 (1102)
Q Consensus       584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (1102)
                       ...     .+   ..   ......++++.|.+ +...+++|+.+|.|.--+.........                   
T Consensus       337 -~~~-----~~---~~---~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~-------------------  385 (555)
T KOG1587|consen  337 -KKH-----KG---QQ---SSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE-------------------  385 (555)
T ss_pred             -ccc-----cc---cc---cccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------------------
Confidence             000     00   00   01123467788888 667788999999886533211100000                   


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccce
Q 001311          663 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  742 (1102)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i  742 (1102)
                                                                                                      
T Consensus       386 --------------------------------------------------------------------------------  385 (555)
T KOG1587|consen  386 --------------------------------------------------------------------------------  385 (555)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC-eE
Q 001311          743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS-YV  821 (1102)
Q Consensus       743 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~-~l  821 (1102)
                        +.|.+...                                               .  ..|.++|.++.++|=+. .+
T Consensus       386 --~~~~~~~~-----------------------------------------------~--~~h~g~v~~v~~nPF~~k~f  414 (555)
T KOG1587|consen  386 --VSYKGHST-----------------------------------------------F--ITHIGPVYAVSRNPFYPKNF  414 (555)
T ss_pred             --cccccccc-----------------------------------------------c--cccCcceEeeecCCCcccee
Confidence              00000000                                               0  01566677777776554 33


Q ss_pred             EEEeCCeEEEEEcC-CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc--eeeeeeccccccceeEEE
Q 001311          822 MSASGGKISLFNMM-TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKLKGHSKRITGLAF  898 (1102)
Q Consensus       822 as~sdg~I~iwd~~-~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l~~h~~~V~~l~~  898 (1102)
                      .+++|-+++||... ....+..+..+...+++++|||.....++++..||.|.+||+...  +.+....-+....+.+.|
T Consensus       415 ls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~  494 (555)
T KOG1587|consen  415 LSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRW  494 (555)
T ss_pred             eeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeec
Confidence            44448888888876 555556666677779999999977789999999999999999753  344444445666778889


Q ss_pred             ecCCCEEEEEcCCCcEEEEEcCC
Q 001311          899 SHALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       899 s~d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                      +++|+.|+.|+..|++.+|++..
T Consensus       495 s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  495 SPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             CCCCcEEEEecCCCcEEEEEcCc
Confidence            99999999999999999999964

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.65  E-value=2.3e-12  Score=146.96  Aligned_cols=149  Identities=17%  Similarity=0.315  Sum_probs=123.4

Q ss_pred             EEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeE
Q 001311          353 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIV  432 (1102)
Q Consensus       353 ~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v  432 (1102)
                      -++++.-| +++|+.-+.|++|++.-.+...                   .+.||.+.|.++.||-||+++++.|.|.++
T Consensus       140 g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-------------------~l~GHeG~iF~i~~s~dg~~i~s~SdDRsi  199 (967)
T KOG0974|consen  140 GDSAEELY-IASGSVFGEIIVWKPHEDNKPI-------------------RLKGHEGSIFSIVTSLDGRYIASVSDDRSI  199 (967)
T ss_pred             eccCcEEE-EEeccccccEEEEeccccCCcc-------------------eecccCCceEEEEEccCCcEEEEEecCcce
Confidence            45666665 8999999999999987222111                   378999999999999999999999999999


Q ss_pred             EEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC-CeEEEeeeecCCc
Q 001311          433 QIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-PVYSVCPHHKENI  511 (1102)
Q Consensus       433 ~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~-~v~~v~~~~~~~~  511 (1102)
                      ++|++++.+....  +.-+|+..|+.+.|.|. .   ++|++.|.+.++|+ ..++.+.++.+|.+ .|..+...  .+.
T Consensus       200 RlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n-~---i~t~gedctcrvW~-~~~~~l~~y~~h~g~~iw~~~~~--~~~  270 (967)
T KOG0974|consen  200 RLWPIDSREVLGC--TGFGHSARVWACCFLPN-R---IITVGEDCTCRVWG-VNGTQLEVYDEHSGKGIWKIAVP--IGV  270 (967)
T ss_pred             eeeecccccccCc--ccccccceeEEEEeccc-e---eEEeccceEEEEEe-cccceehhhhhhhhcceeEEEEc--CCc
Confidence            9999999887652  46689999999999988 3   99999999999997 55666778888864 47777753  444


Q ss_pred             cEEEEEeCCCeEEEEEcCC
Q 001311          512 QFIFSTALDGKIKAWLYDN  530 (1102)
Q Consensus       512 ~~l~s~s~dg~i~~wd~~~  530 (1102)
                      ..++|++.|+.+++|++..
T Consensus       271 ~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  271 IIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eEEEeeccCcchhhhhhhc
Confidence            7899999999999998754

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=2.9e-15  Score=153.82  Aligned_cols=198  Identities=16%  Similarity=0.174  Sum_probs=159.6

Q ss_pred             eEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc
Q 001311          810 PCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  888 (1102)
Q Consensus       810 ~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~  888 (1102)
                      .+++|+.+|..++++. ||++|||+..+...+.....|..+|.++.|+| |+++|++-+.| ..+||+..++..++....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999998 99999999888888888888999999999999 99999999999 999999999977766643


Q ss_pred             --ccccceeEEEecCC-----CEEEEEcCCCcEEEEEcCCCcccce-eeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e
Q 001311          889 --HSKRITGLAFSHAL-----NVLVSSGADSQLCVWSSDGWEKQKN-RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H  959 (1102)
Q Consensus       889 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~  959 (1102)
                        -......+.|+.|+     ..++....-+.|+.|++........ +..+....+    ..|++++.|+||+++|.+ .
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence              22345667888877     3344445556788877765332110 111111111    378999999999999996 8


Q ss_pred             CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311          960 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       960 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      ||.|.|++..+.+++.... +.|..-|+.+.|+||.+++++.+.|..+.|..+.-
T Consensus       302 dGsVai~~~~~lq~~~~vk-~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVK-EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeeh-hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            9999999999999887665 58999999999999999999999999999887654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=5.8e-14  Score=161.38  Aligned_cols=268  Identities=15%  Similarity=0.161  Sum_probs=178.0

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      +.++..|...|..++.+++..-+++|||.||+|+|||...-..-. ..+           ....++.--...+.++.+.+
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s~-----------rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-GSA-----------RSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-cee-----------eeeEEEeccCCceEEEEecc
Confidence            455666999999999988774469999999999999986422110 000           01112333567899999999


Q ss_pred             CCCeEEEEECCCeEEEEEccCC--ceee--eEEE--eeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGG--DEVR--QHLE--IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~--~~~~--~~~~--l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~  492 (1102)
                      .|..+|+++.||.|++.+++..  ....  +...  +.....-|..-+|....+...++.+..-+.|..||+++...+.+
T Consensus      1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred             CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence            9999999999999999998762  1111  1111  11122234455565544433677788889999999998776665


Q ss_pred             ee--cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCC-CeeeEEEEccCCceeeeccccCceeEEE
Q 001311          493 FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       493 ~~--~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                      ++  ...+.|++++.  ++.+.++++|+..|.+.+||++-...+.....+. .++..+...+-.                
T Consensus      1189 lk~~~~hG~vTSi~i--dp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~---------------- 1250 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVI--DPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTY---------------- 1250 (1431)
T ss_pred             hhcCccccceeEEEe--cCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccC----------------
Confidence            53  34577999997  4556799999999999999998766655443322 234444333322                


Q ss_pred             EcCCCCEEEEEe--CCCeEEEEECCCcceEEEEcCCCC-----------------CCCcCeEEEcCCCCEEEEEECCCcE
Q 001311          570 FDTTKNRFLAAG--DDFSIKFWDMDSVQLLTSIDADGG-----------------LPASPRIRFNKDGCLLAVSTNDNGI  630 (1102)
Q Consensus       570 ~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~dg~i  630 (1102)
                        +.....++++  ..+.|.+|++.+|.+...+-....                 ........+...+..+.+|+.|..|
T Consensus      1251 --~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1251 --PQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred             --CCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence              2223344443  578899999999977766643311                 0111223334456789999999999


Q ss_pred             EEEEccCC
Q 001311          631 KILATSDG  638 (1102)
Q Consensus       631 ~iwd~~~~  638 (1102)
                      +.||....
T Consensus      1329 R~wD~~~p 1336 (1431)
T KOG1240|consen 1329 RKWDPTRP 1336 (1431)
T ss_pred             eeccCCCc
Confidence            99998776

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.63  E-value=9.1e-14  Score=159.82  Aligned_cols=214  Identities=11%  Similarity=0.119  Sum_probs=152.1

Q ss_pred             ccCCCCCCeEEEEEccCC-CeEEEEECCCeEEEEEccCC----ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311          403 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  477 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg-~~las~~~d~~v~vwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~  477 (1102)
                      .+..|...|..++.+++. .++++||.||+|++||...-    ...+...++......+.++.+.+.+.  .++.++.||
T Consensus      1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG 1120 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDG 1120 (1431)
T ss_pred             hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCC
Confidence            377899999999998854 99999999999999997631    22333334444567899999999999  588889999


Q ss_pred             cEEEEeCCC--Ce-----eeEEeec-CCCCeEEE-eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEE
Q 001311          478 TIKVWDATN--GA-----KQYIFEG-HEAPVYSV-CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  548 (1102)
Q Consensus       478 ~i~vWd~~~--~~-----~~~~~~~-h~~~v~~v-~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  548 (1102)
                      .|++.++..  .+     +.+.... ..+.+.++ ++........++.+..-+.|..||++.......++..        
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~-------- 1192 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQ-------- 1192 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcC--------
Confidence            999999876  22     1222222 23334444 3332222237888888999999999876655443321        


Q ss_pred             EccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC---CCEEEEEE
Q 001311          549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD---GCLLAVST  625 (1102)
Q Consensus       549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~  625 (1102)
                                 ...+.+++++++|.+++++.|...|.+.+||++-+.++.......+ ..+..+..+|-   ....++++
T Consensus      1193 -----------~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S~~vs~~ 1260 (1431)
T KOG1240|consen 1193 -----------LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQESVSVSAG 1260 (1431)
T ss_pred             -----------ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCceEEEec
Confidence                       1123566666777778999999999999999999988888764443 56787877763   24555444


Q ss_pred             --CCCcEEEEEccCC
Q 001311          626 --NDNGIKILATSDG  638 (1102)
Q Consensus       626 --~dg~i~iwd~~~~  638 (1102)
                        ..+.|.+|++.+|
T Consensus      1261 ~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1261 SSSNNEVSTWNMETG 1275 (1431)
T ss_pred             ccCCCceeeeecccC
Confidence              4788999999988

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=5.5e-15  Score=151.80  Aligned_cols=200  Identities=17%  Similarity=0.162  Sum_probs=151.7

Q ss_pred             eEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeee
Q 001311          851 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL  930 (1102)
Q Consensus       851 ~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~  930 (1102)
                      .+++|+. +|..|++|+.||++|||+..+...+.....|.+.|.+|.|||||++|++.+.| ..+||+..++-...    
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a----  221 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALA----  221 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhh----
Confidence            7899999 89999999999999999988877778888899999999999999999999999 79999999873211    


Q ss_pred             ecCCCCCCCCCCCcEEEEccCC---c-EEEEE--eCCeEEEEEcCCceE---eeeeccCCCCCCeeEEEEcCCCcEEEEE
Q 001311          931 QIPTGRTPTAQSDTRVQFHQDQ---I-HFLVV--HETQLAIFETTKLEC---VKQWVPRESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus       931 ~~~~~~~~~~~~v~~~~~spdg---~-~l~~~--~d~~i~iwd~~~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
                       .... .........+.|+.|+   . ++++.  .-+.|+.||+.....   .+....-.-...|++++.|+||+++|.|
T Consensus       222 -~~t~-~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  222 -RKTP-FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             -hcCC-cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence             1110 1111356788898887   3 33332  445677766543222   1111111124589999999999999999


Q ss_pred             eCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311         1002 FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1002 s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                      +.||.|.|++..+.+.+.-++      ..|.   ..++.+.|+| |.+++++.+.|....|..+.-.
T Consensus       300 T~dGsVai~~~~~lq~~~~vk------~aH~---~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd  356 (398)
T KOG0771|consen  300 TMDGSVAIYDAKSLQRLQYVK------EAHL---GFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD  356 (398)
T ss_pred             ccCCcEEEEEeceeeeeEeeh------hhhe---eeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence            999999999999888776544      3332   3445999999 6899999999999999998653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.63  E-value=1.7e-14  Score=142.25  Aligned_cols=209  Identities=15%  Similarity=0.187  Sum_probs=163.0

Q ss_pred             CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-C
Q 001311          408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-N  486 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~  486 (1102)
                      ..+|+|.+|++|+..+|++-....|.||...+.+.....+++..|...|++|.|+|...  .|++|+.|..-+||... .
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence            46899999999999999999999999999998887777888999999999999999998  69999999999999984 3


Q ss_pred             Ce--eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311          487 GA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  564 (1102)
Q Consensus       487 ~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  564 (1102)
                      ++  +.-.+..|....+++.|++..  +.|++|+.-..|.+|-++....=..-+.                 +.......
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKh-----------------ikkPirSt  148 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKH-----------------IKKPIRST  148 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhh-----------------hCCccccc
Confidence            33  344556688899999996555  6899999999999997764332111100                 11111235


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECC-----C-------------cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311          565 LGVVQFDTTKNRFLAAGDDFSIKFWDMD-----S-------------VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  626 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~-----~-------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  626 (1102)
                      +.+++|+|++-++++|+.|+..|++..-     .             |.++..+.  ...+.+..+.|+|+|..|+-.+.
T Consensus       149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~H  226 (361)
T KOG1523|consen  149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGH  226 (361)
T ss_pred             eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecC
Confidence            6778888888889999999999998642     1             11222222  22347899999999999999999


Q ss_pred             CCcEEEEEccCCc
Q 001311          627 DNGIKILATSDGI  639 (1102)
Q Consensus       627 dg~i~iwd~~~~~  639 (1102)
                      |..+.+-|.....
T Consensus       227 ds~v~~~da~~p~  239 (361)
T KOG1523|consen  227 DSTVSFVDAAGPS  239 (361)
T ss_pred             CCceEEeecCCCc
Confidence            9999999987664

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.62  E-value=8.6e-13  Score=133.16  Aligned_cols=305  Identities=14%  Similarity=0.190  Sum_probs=198.1

Q ss_pred             ccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311          739 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  818 (1102)
Q Consensus       739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~  818 (1102)
                      ...+..+.|..+...|..|+.|| .++|+.+....                      .   .........|..+-|+.. 
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k----------------------~---~~~~~~~~~IvEmLFSSS-   57 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEK----------------------C---FSKDTEGVSIVEMLFSSS-   57 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHH----------------------h---hcccCCCeEEEEeecccc-
Confidence            34566677888888777777775 35555422110                      0   000002333555555544 


Q ss_pred             CeEEEEe--C-CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc---cccc
Q 001311          819 SYVMSAS--G-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKR  892 (1102)
Q Consensus       819 ~~las~s--d-g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~---h~~~  892 (1102)
                       ++|..+  + ..+++.+.+....+..+. ...+|.++.+..   +.|+++-++ .|+|||+++-+++.++..   +...
T Consensus        58 -LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~g  131 (391)
T KOG2110|consen   58 -LVAIVSIKQPRKLKVVHFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKG  131 (391)
T ss_pred             -eeEEEecCCCceEEEEEcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhccCCCccc
Confidence             555544  2 569999998877777665 456799999975   455555544 499999999998887753   4555


Q ss_pred             ceeEEEecCCCEEEEEc--CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeC-C-eEEEEEc
Q 001311          893 ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE-T-QLAIFET  968 (1102)
Q Consensus       893 V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d-~-~i~iwd~  968 (1102)
                      +.++++++.+.+||.-+  ..|.|.+||..+-+.     ......|.   +.+.+++|+++|.+||++++ | -||||.+
T Consensus       132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~-----v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v  203 (391)
T KOG2110|consen  132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP-----VNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSV  203 (391)
T ss_pred             eEeeccCCCCceEEecCCCCCceEEEEEccccee-----eeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEc
Confidence            66677777777998543  358899999987432     33333444   48999999999999999744 4 5899999


Q ss_pred             CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC--------------CCcccCCCCC--
Q 001311          969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN--------------PSAYLPAGVS-- 1032 (1102)
Q Consensus       969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~--------------~~~~~~~gh~-- 1032 (1102)
                      .+|+.+..|+.+.-...|.+++|+||+.+|++.+..++|.||.++.-..-..-.              ...|+|..-.  
T Consensus       204 ~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~  283 (391)
T KOG2110|consen  204 PEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSV  283 (391)
T ss_pred             CCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhh
Confidence            999999999865446679999999999999999999999999886543111000              0001111100  


Q ss_pred             -------------CCcccceEEEecC-CCCCEEEEEecCCcEEEEeccCCC--cccccCCCCCCCCCCC
Q 001311         1033 -------------SSNVHPLVIAAHP-QEPNEFALGLSDGGVHVFEPLESE--GKWGVPPPVDNGSTSS 1085 (1102)
Q Consensus      1033 -------------~~~v~~~~v~f~p-~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~~~~~~~~~~~ 1085 (1102)
                                   .....- .+++.+ +....+..++.||.++.+.++-.+  +.+-+.+-+-.|.+.+
T Consensus       284 ~~~~R~FAt~~l~~s~~~~-~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h~~~~~~~t  351 (391)
T KOG2110|consen  284 LDQSRKFATAKLPESGRKN-ICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRHFLDGSIDT  351 (391)
T ss_pred             hhhccceeEEEccCCCccc-eEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEeeccCCcccc
Confidence                         000000 233332 245788889999999999987643  4444443443444433

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.62  E-value=2.7e-12  Score=146.47  Aligned_cols=196  Identities=14%  Similarity=0.203  Sum_probs=153.0

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCC-----CeEEEEEccCCCe
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGSL  422 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~~  422 (1102)
                      .|....+.-+.+. ++.+..++.+.|||+..+.....                    ..+..     ...-+-++++.-+
T Consensus        89 wi~g~~l~~e~k~-i~l~~~~ns~~i~d~~~~~~~~~--------------------i~~~er~~l~~~~~~g~s~~~~~  147 (967)
T KOG0974|consen   89 WIFGAKLFEENKK-IALVTSRNSLLIRDSKNSSVLSK--------------------IQSDERCTLYSSLIIGDSAEELY  147 (967)
T ss_pred             cccccchhhhcce-EEEEEcCceEEEEecccCceehh--------------------cCCCceEEEEeEEEEeccCcEEE
Confidence            3444555555564 88888889999999987655432                    11111     2233456778889


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE-EeecCCCCeE
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVY  501 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~-~~~~h~~~v~  501 (1102)
                      +++|+.-+.|.+|+..... .  ...+.||.+.|.++.|+.||+  ++++.|+|+++|+|++++++... +.-+|...|+
T Consensus       148 i~~gsv~~~iivW~~~~dn-~--p~~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw  222 (967)
T KOG0974|consen  148 IASGSVFGEIIVWKPHEDN-K--PIRLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVW  222 (967)
T ss_pred             EEeccccccEEEEeccccC-C--cceecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeE
Confidence            9999999999999988322 1  114889999999999999999  89999999999999999998876 7778999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      .++|.+.    .+++++.|-+.++|+......                     ..+.+|....++.+++.++...+++++
T Consensus       223 ~~~~~~n----~i~t~gedctcrvW~~~~~~l---------------------~~y~~h~g~~iw~~~~~~~~~~~vT~g  277 (967)
T KOG0974|consen  223 ACCFLPN----RIITVGEDCTCRVWGVNGTQL---------------------EVYDEHSGKGIWKIAVPIGVIIKVTGG  277 (967)
T ss_pred             EEEeccc----eeEEeccceEEEEEeccccee---------------------hhhhhhhhcceeEEEEcCCceEEEeec
Confidence            9998543    899999999999996553221                     245566667888888888888999999


Q ss_pred             CCCeEEEEECCCc
Q 001311          582 DDFSIKFWDMDSV  594 (1102)
Q Consensus       582 ~dg~i~iwd~~~~  594 (1102)
                      .|+.+++|++...
T Consensus       278 ~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  278 NDSTLKLWDLNGR  290 (967)
T ss_pred             cCcchhhhhhhcc
Confidence            9999999998653

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=5e-15  Score=155.43  Aligned_cols=238  Identities=11%  Similarity=0.154  Sum_probs=171.2

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--C
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  419 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d  419 (1102)
                      +.+|++.|+|++|+.||. +|++|+.|-.+.|||+...+.++.                  +-.||...|.++.|-|  +
T Consensus        46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFvP~tn  106 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFVPYTN  106 (758)
T ss_pred             hccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeeeccCC
Confidence            568999999999999999 599999999999999998777775                  5789999999999999  7


Q ss_pred             CCeEEEEECCCeEEEEEccCCc-------eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee---
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGD-------EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---  489 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~-------~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~---  489 (1102)
                      .+++++|..|..|+|+|+...+       ...+...+..|...|.-|+-.|++.+ .+.+++.||+|+-+|++....   
T Consensus       107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p  185 (758)
T KOG1310|consen  107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP  185 (758)
T ss_pred             CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence            7889999999999999998421       12233346679999999999999966 899999999999999986321   


Q ss_pred             ----eE---EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee-----cCCCCeeeEE-EEccCCcee
Q 001311          490 ----QY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EAPGRWCTTM-AYSADGTRT  556 (1102)
Q Consensus       490 ----~~---~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~-~~s~~~~~~  556 (1102)
                          ..   .+....-...++.+++... .+|+.|+.|-..++||.+...+...-     ..+.....++ -|+|.+-..
T Consensus       186 ~~~~~~~l~ny~~~lielk~ltisp~rp-~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn  264 (758)
T KOG1310|consen  186 DEDCPSILVNYNPQLIELKCLTISPSRP-YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN  264 (758)
T ss_pred             cccccHHHHHhchhhheeeeeeecCCCC-ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence                11   1111222345666665443 79999999999999996432221110     0111112222 234444322


Q ss_pred             eeccccCc---eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001311          557 YQGFRKRS---LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  600 (1102)
Q Consensus       557 ~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  600 (1102)
                      ..+.....   .+-++|+|+|..|+..-..-.|+++|+..++....+
T Consensus       265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            33322223   455789999988877666668999999887765544

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.59  E-value=1.1e-10  Score=121.24  Aligned_cols=145  Identities=11%  Similarity=0.053  Sum_probs=108.0

Q ss_pred             cccceEEEEEccCCceEEEeecCc-eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          738 RATKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                      +...|.-..+.-++..++.+..|| .+-|++.                      .++.+....    ..-+.|.++..++
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~----------------------~~~e~kr~e----~~lg~I~av~vs~  411 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDK----------------------DGGEVKRIE----KDLGNIEAVKVSP  411 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEec----------------------CCceEEEee----CCccceEEEEEcC
Confidence            344566666666666788888887 7777765                      333332221    1456799999999


Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC----cEEEEEeecceeeeeeccccc
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYNVRVDEVKSKLKGHSK  891 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd~~~~~~~~~l~~h~~  891 (1102)
                      ||++++++. ...|.+.|+.++.....-+...+-|+.++|+| +++++|.+--+|    .|++||+.+++....-. ..+
T Consensus       412 dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta  489 (668)
T COG4946         412 DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA  489 (668)
T ss_pred             CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence            999999998 57899999999887665565667899999999 999999998776    78999999888654432 333


Q ss_pred             cceeEEEecCCCEEEEEcC
Q 001311          892 RITGLAFSHALNVLVSSGA  910 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s~  910 (1102)
                      .=.+-+|.||+++|.--+.
T Consensus       490 ~DfsPaFD~d~ryLYfLs~  508 (668)
T COG4946         490 YDFSPAFDPDGRYLYFLSA  508 (668)
T ss_pred             cccCcccCCCCcEEEEEec
Confidence            3456789999999876543

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.59  E-value=3.6e-13  Score=133.17  Aligned_cols=241  Identities=14%  Similarity=0.194  Sum_probs=169.2

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCcEEE-EEeCC------CcEEEEEee
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIA-IGMDD------SSIQIYNVR  878 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~la-sg~~d------g~v~vwd~~  878 (1102)
                      ...+++|+.|..-+++|.|...+||+.+-.+.....+.+.+  .+..+-|-   .++|| +|+.+      ..|.|||=.
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEecc
Confidence            35569999999999999998899999876444332222222  23333332   23444 34333      489999966


Q ss_pred             cceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-
Q 001311          879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-  957 (1102)
Q Consensus       879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-  957 (1102)
                      ..+++.++. ...+|.+|.+++|  .||+.- .+.|.||.....-.. ...+......    ..+.+++=+.+..+||. 
T Consensus        84 k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~-l~~~et~~NP----kGlC~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   84 KERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKL-LHVIETRSNP----KGLCSLCPTSNKSLLAFP  154 (346)
T ss_pred             cCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhh-eeeeecccCC----CceEeecCCCCceEEEcC
Confidence            677777776 6788999999866  455544 567999998853221 1222222211    12233333334455555 


Q ss_pred             E-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCe-EEEEEcCCceeEEEeCCCcccCCCCCCCc
Q 001311          958 V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSN 1035 (1102)
Q Consensus       958 ~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1035 (1102)
                      | .-|+|+|-|+...+.-......+|.+.|.|++++-+|.++||+|..|+ |||||..+|.+++.++      .|.....
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R------RG~d~A~  228 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR------RGVDRAD  228 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee------cCCchhe
Confidence            5 669999999987665322333489999999999999999999999998 8999999999999887      3434444


Q ss_pred             ccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1036 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1036 v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      ++  +++|+| |..+|++.|+-|+|+|+.+....
T Consensus       229 iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  229 IY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             EE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence            77  999999 68999999999999999997755

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=2e-12  Score=142.38  Aligned_cols=326  Identities=10%  Similarity=0.102  Sum_probs=198.8

Q ss_pred             EEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001311          513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD  592 (1102)
Q Consensus       513 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  592 (1102)
                      ++++-..++.|.+.|..+.+....+.........+.+++|                     ++++++++.||.|.++|+.
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~D---------------------gr~~yv~~rdg~vsviD~~   66 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPD---------------------GRYLYVANRDGTVSVIDLA   66 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT----------------------SSEEEEEETTSEEEEEETT
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCC---------------------CCEEEEEcCCCeEEEEECC
Confidence            3456667899999999987777766654433333444444                     4578888899999999999


Q ss_pred             CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhH
Q 001311          593 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA  671 (1102)
Q Consensus       593 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (1102)
                      +++.+..+.....   ..++++++||++++++. ..+.+.++|..+. +.++.+.......                   
T Consensus        67 ~~~~v~~i~~G~~---~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tl-e~v~~I~~~~~~~-------------------  123 (369)
T PF02239_consen   67 TGKVVATIKVGGN---PRGIAVSPDGKYVYVANYEPGTVSVIDAETL-EPVKTIPTGGMPV-------------------  123 (369)
T ss_dssp             SSSEEEEEE-SSE---EEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-T-------------------
T ss_pred             cccEEEEEecCCC---cceEEEcCCCCEEEEEecCCCceeEeccccc-cceeecccccccc-------------------
Confidence            9999999875433   67899999999998775 5899999999887 5555443211100                   


Q ss_pred             hhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCC
Q 001311          672 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG  751 (1102)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g  751 (1102)
                                                                                      .....++..+..++..
T Consensus       124 ----------------------------------------------------------------~~~~~Rv~aIv~s~~~  139 (369)
T PF02239_consen  124 ----------------------------------------------------------------DGPESRVAAIVASPGR  139 (369)
T ss_dssp             ----------------------------------------------------------------TTS---EEEEEE-SSS
T ss_pred             ----------------------------------------------------------------cccCCCceeEEecCCC
Confidence                                                                            0023466777778887


Q ss_pred             ceEEEeecC-ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCe
Q 001311          752 NAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGK  828 (1102)
Q Consensus       752 ~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~  828 (1102)
                      ..++..-.| +.|.+-|+...                     ..+....+   ..........|+|++++++++.  ++.
T Consensus       140 ~~fVv~lkd~~~I~vVdy~d~---------------------~~~~~~~i---~~g~~~~D~~~dpdgry~~va~~~sn~  195 (369)
T PF02239_consen  140 PEFVVNLKDTGEIWVVDYSDP---------------------KNLKVTTI---KVGRFPHDGGFDPDGRYFLVAANGSNK  195 (369)
T ss_dssp             SEEEEEETTTTEEEEEETTTS---------------------SCEEEEEE---E--TTEEEEEE-TTSSEEEEEEGGGTE
T ss_pred             CEEEEEEccCCeEEEEEeccc---------------------cccceeee---cccccccccccCcccceeeecccccce
Confidence            766655554 66655554221                     00000001   0234566789999999988875  688


Q ss_pred             EEEEEcCCCceeeeecC----CCCCeeEE-------EEecC-CCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeE
Q 001311          829 ISLFNMMTFKTMATFMP----PPPAATFL-------AFHPQ-DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGL  896 (1102)
Q Consensus       829 I~iwd~~~~~~~~~~~~----~~~~i~~l-------~~sp~-d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l  896 (1102)
                      |-++|.++++.+..+..    |......+       .|... .+...++.-....+.+||..+.+.++++...... .-+
T Consensus       196 i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi  274 (369)
T PF02239_consen  196 IAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFI  274 (369)
T ss_dssp             EEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---E
T ss_pred             eEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-cee
Confidence            99999999887765432    33333222       12110 2222222223346667888889999999877666 678


Q ss_pred             EEecCCCEEEEE----cCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE---eCCeEEEEEcC
Q 001311          897 AFSHALNVLVSS----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETT  969 (1102)
Q Consensus       897 ~~s~d~~~l~s~----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~---~d~~i~iwd~~  969 (1102)
                      ..+|++++|.+.    ...++|.|+|.++.+...  .+....+     ..+..+.|++||+++.++   .++.|.+||..
T Consensus       275 ~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~--~i~~~~~-----~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~  347 (369)
T PF02239_consen  275 KTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVK--TITPGPG-----KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAK  347 (369)
T ss_dssp             E--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE---HHHHHT-------EEEEEE-TTSSEEEEEEE--TTEEEEEETT
T ss_pred             ecCCCCccEEeeccCCCCCceEEEEECcCcceeE--EEeccCC-----CcEeccEECCCCCEEEEEEecCCCEEEEEECC
Confidence            889999999988    455889999999864311  1111111     137899999999988774   34489999999


Q ss_pred             CceEeeeec
Q 001311          970 KLECVKQWV  978 (1102)
Q Consensus       970 ~~~~~~~~~  978 (1102)
                      +.+.+..+.
T Consensus       348 Tl~~~~~i~  356 (369)
T PF02239_consen  348 TLKEKKRIP  356 (369)
T ss_dssp             TTEEEEEEE
T ss_pred             CcEEEEEEE
Confidence            999988765

...

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.58  E-value=1.6e-12  Score=143.10  Aligned_cols=323  Identities=14%  Similarity=0.108  Sum_probs=192.9

Q ss_pred             eeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeE
Q 001311          467 QLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT  546 (1102)
Q Consensus       467 ~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~  546 (1102)
                      .+++++-..++.|.|.|..+.+.+.++......-..+.+  ++||+++++++.||.|.++|+.+.+...++... .....
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G-~~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVG-GNPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-S-SEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecC-CCcce
Confidence            345677788999999999999999999865443233444  677889999999999999999998766655432 23344


Q ss_pred             EEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCC-----CCCcCeEEEcCCCCE
Q 001311          547 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCL  620 (1102)
Q Consensus       547 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~  620 (1102)
                      +++++|                     |++++++. .++.+.++|.++.+.+..+...+.     ...+..+..++....
T Consensus        83 i~~s~D---------------------G~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~  141 (369)
T PF02239_consen   83 IAVSPD---------------------GKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPE  141 (369)
T ss_dssp             EEE--T---------------------TTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSE
T ss_pred             EEEcCC---------------------CCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCE
Confidence            555554                     45676654 789999999999999888764321     224556777887775


Q ss_pred             EEEEEC-CCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCcccc
Q 001311          621 LAVSTN-DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSL  699 (1102)
Q Consensus       621 l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  699 (1102)
                      +++.-. .+.|.+.|..+.........                                                     
T Consensus       142 fVv~lkd~~~I~vVdy~d~~~~~~~~i-----------------------------------------------------  168 (369)
T PF02239_consen  142 FVVNLKDTGEIWVVDYSDPKNLKVTTI-----------------------------------------------------  168 (369)
T ss_dssp             EEEEETTTTEEEEEETTTSSCEEEEEE-----------------------------------------------------
T ss_pred             EEEEEccCCeEEEEEeccccccceeee-----------------------------------------------------
Confidence            555544 47777777654411110000                                                     


Q ss_pred             CCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec-CceEEeeeccccccCCCCc
Q 001311          700 ADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGK  778 (1102)
Q Consensus       700 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~  778 (1102)
                                        +                   .........|+|++++++++.. +..+-++|..+...     
T Consensus       169 ------------------~-------------------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-----  206 (369)
T PF02239_consen  169 ------------------K-------------------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-----  206 (369)
T ss_dssp             ------------------E---------------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-----
T ss_pred             ------------------c-------------------ccccccccccCcccceeeecccccceeEEEeeccceE-----
Confidence                              0                   1123456788999998777544 46777777643211     


Q ss_pred             ccccccceeccCCCccccccccCCCCCCCCeeE-------EEE--ecCCCeEEEE-eCCeEEEEEcCCCceeeeecCCCC
Q 001311          779 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC-------FAL--SKNDSYVMSA-SGGKISLFNMMTFKTMATFMPPPP  848 (1102)
Q Consensus       779 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~-------l~~--s~d~~~las~-sdg~I~iwd~~~~~~~~~~~~~~~  848 (1102)
                              +..+..|..        .|..+...       ..|  ...+...++. +.+.+.+|+..+++.++++....+
T Consensus       207 --------v~~i~~g~~--------p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~  270 (369)
T PF02239_consen  207 --------VALIDTGKK--------PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGG  270 (369)
T ss_dssp             --------EEEEE-SSS--------BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred             --------EEEeecccc--------ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCC
Confidence                    111111110        01222211       112  2333343222 345677899999999999987766


Q ss_pred             CeeEEEEecCCCcEEEEE----eCCCcEEEEEeecceeeeeecccc-ccceeEEEecCCCEEEEEcCC--CcEEEEEcCC
Q 001311          849 AATFLAFHPQDNNIIAIG----MDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGAD--SQLCVWSSDG  921 (1102)
Q Consensus       849 ~i~~l~~sp~d~~~lasg----~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~  921 (1102)
                      . ..+..+| +++++.+.    ...++|.|+|..+.+.+..+.... ..+..+.|++||+++..+..+  +.|.|||..+
T Consensus       271 g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  271 G-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             S---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             c-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCC
Confidence            6 8888899 89999887    455899999999988877775332 358899999999977655444  3699999999


Q ss_pred             Ccccc
Q 001311          922 WEKQK  926 (1102)
Q Consensus       922 ~~~~~  926 (1102)
                      .+...
T Consensus       349 l~~~~  353 (369)
T PF02239_consen  349 LKEKK  353 (369)
T ss_dssp             TEEEE
T ss_pred             cEEEE
Confidence            76543

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=1.5e-13  Score=157.22  Aligned_cols=223  Identities=13%  Similarity=0.125  Sum_probs=146.2

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecC--CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      ...+..|...+.+.+|||||++|+.++..+  ..|++||+.+++.....                 .+.+|   ..+++|
T Consensus       196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-----------------~~~g~---~~~~~w  255 (429)
T PRK01742        196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-----------------SFRGH---NGAPAF  255 (429)
T ss_pred             ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-----------------cCCCc---cCceeE
Confidence            344556888899999999999854443322  47999999887643210                 12333   346899


Q ss_pred             ccCCCeEEEEE-CCCeEEEE--EccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEE
Q 001311          417 SPDGSLFGVAY-SRHIVQIY--SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYI  492 (1102)
Q Consensus       417 spdg~~las~~-~d~~v~vw--d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~  492 (1102)
                      ||||++|+.++ .+|.+.||  |+.++...    .+..|...+...+|+|||+. +++++..++...||++... .....
T Consensus       256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~  330 (429)
T PRK01742        256 SPDGSRLAFASSKDGVLNIYVMGANGGTPS----QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASL  330 (429)
T ss_pred             CCCCCEEEEEEecCCcEEEEEEECCCCCeE----eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEE
Confidence            99999998865 67866655  56565432    35667778899999999995 3444556788888886532 22333


Q ss_pred             eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311          493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  572 (1102)
Q Consensus       493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  572 (1102)
                      + ++..  ....|  +++|++|+..+.++ +.+||+.++.........  .                     .....|+|
T Consensus       331 l-~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~--~---------------------~~~~~~sP  381 (429)
T PRK01742        331 V-GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF--L---------------------DESPSISP  381 (429)
T ss_pred             e-cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC--C---------------------CCCceECC
Confidence            3 3443  33455  56778888887765 555898765432211110  0                     12345777


Q ss_pred             CCCEEEEEeCCCeEEEEEC--CCcceEEEEcCCCCCCCcCeEEEcCC
Q 001311          573 TKNRFLAAGDDFSIKFWDM--DSVQLLTSIDADGGLPASPRIRFNKD  617 (1102)
Q Consensus       573 ~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~~~~s~~  617 (1102)
                      ++++|+.++.++.+.+|++  .+|+.+..+..+.+  .+...+|+|-
T Consensus       382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~  426 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY  426 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence            7778999988888888875  35777777765443  5778899884

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=4.3e-13  Score=153.46  Aligned_cols=225  Identities=14%  Similarity=0.131  Sum_probs=150.1

Q ss_pred             CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC---CeEEEEEccCCceee
Q 001311          368 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVR  444 (1102)
Q Consensus       368 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~  444 (1102)
                      +..|.|||...... .                   .+..|...|.+.+|||||++||.++.+   ..|++||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~-~-------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQ-F-------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCc-e-------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            46899999875442 2                   256778899999999999999988654   479999999876432


Q ss_pred             eEEEeeccccCEEEEEEcCCCCeeEEEE-ecCCCcEEEE--eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEe-CC
Q 001311          445 QHLEIDAHVGGVNDIAFSHPNKQLCVIT-CGDDKTIKVW--DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LD  520 (1102)
Q Consensus       445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s-~~~d~~i~vW--d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~d  520 (1102)
                       +..+.+|   ..+++|+|||+.  |+. .+.+|.+.||  |+.+++ +..+..+...+....|+  +||+.|+..+ .+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWS--PDGQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEEC--CCCCEEEEEECCC
Confidence             2234444   446899999994  444 4567765555  665555 45566677777777875  5566665544 57


Q ss_pred             CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001311          521 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  600 (1102)
Q Consensus       521 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  600 (1102)
                      |...+|+++..........+.                     .  ....|+|+|++++.++.++ +.+||+.+++.....
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~---------------------~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt  369 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGR---------------------G--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLS  369 (429)
T ss_pred             CCceEEEEECCCCCeEEecCC---------------------C--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEec
Confidence            888999876433221111110                     0  1245677777888777665 566999888765332


Q ss_pred             cCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc--CCccceeecccccc
Q 001311          601 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAY  650 (1102)
Q Consensus       601 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~  650 (1102)
                      ...    ...++.|+|||++|+.++.+|.+.+|.+.  ++ ...+.+.++..
T Consensus       370 ~~~----~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G-~~~~~l~~~~g  416 (429)
T PRK01742        370 STF----LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG-RFKARLPGSDG  416 (429)
T ss_pred             CCC----CCCCceECCCCCEEEEEEcCCCceEEEEEECCC-CceEEccCCCC
Confidence            221    23568899999999999999999888763  34 45555555443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.57  E-value=2.6e-13  Score=134.10  Aligned_cols=244  Identities=15%  Similarity=0.144  Sum_probs=183.5

Q ss_pred             CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCC---ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF---KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-  879 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~---~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-  879 (1102)
                      ...+|+|.+|++|+..+|++. ...|.||.....   +..+++..|...|++++|+| ..+.|++++.|..-+||...+ 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecC-CCCceeEccCCCCccccccCCC
Confidence            357899999999999999998 678999988654   46788999999999999999 889999999999999999833 


Q ss_pred             c--eeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          880 D--EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       880 ~--~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      +  +..-.+..|...+++|.|+|..+.+|+|+....|.||-++....  .-+-+..  ..+....|.++.|+|++-+|++
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd--WWVsKhi--kkPirStv~sldWhpnnVLlaa  163 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND--WWVSKHI--KKPIRSTVTSLDWHPNNVLLAA  163 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc--eehhhhh--CCccccceeeeeccCCcceecc
Confidence            3  34455667899999999999999999999999999998876321  1111111  1112257899999999999999


Q ss_pred             E-eCCeEEEEEcC-----C-------------ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee-
Q 001311          958 V-HETQLAIFETT-----K-------------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL- 1017 (1102)
Q Consensus       958 ~-~d~~i~iwd~~-----~-------------~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~- 1017 (1102)
                      + .|+..+||..-     +             |+++..+.  ...+.|..+.|+|+|..|+-.+.|++|.+=|...... 
T Consensus       164 Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~--~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~  241 (361)
T KOG1523|consen  164 GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS--SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSER  241 (361)
T ss_pred             cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc--cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchh
Confidence            5 89999888641     1             12222222  3367899999999999999999999999999877753 


Q ss_pred             EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1018 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1018 ~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      +..+. ...+|.         +++.|..  .+.++.++.|+.=.++...+
T Consensus       242 v~~~~-~~~lP~---------ls~~~is--e~~vv~ag~~c~P~lf~~~~  279 (361)
T KOG1523|consen  242 VQSVA-TAQLPL---------LSVSWIS--ENSVVAAGYDCGPVLFVTDE  279 (361)
T ss_pred             ccchh-hccCCc---------eeeEeec--CCceeecCCCCCceEEEecc
Confidence            32222 222442         2677765  35777777776555555443

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.57  E-value=1.1e-12  Score=131.51  Aligned_cols=255  Identities=16%  Similarity=0.187  Sum_probs=166.9

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLF  423 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~l  423 (1102)
                      -+-.+..++|++.--. +|++..|..|+|||-.......                   +-......|+|++|-| .++-|
T Consensus        97 s~~dlr~~aWhqH~~~-fava~nddvVriy~ksst~pt~-------------------Lks~sQrnvtclawRPlsasel  156 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHIIA-FAVATNDDVVRIYDKSSTCPTK-------------------LKSVSQRNVTCLAWRPLSASEL  156 (445)
T ss_pred             hhcceeeEeechhhhh-hhhhccCcEEEEeccCCCCCce-------------------ecchhhcceeEEEeccCCccee
Confidence            3457788999995543 8899999999999976522211                   1223345899999999 45567


Q ss_pred             EEEECCCeEEEEEccCCceee-----------eEEEeeccccCEEEEEEcCCCCeeEEEEec-CCCcEEEEeCCCCeeeE
Q 001311          424 GVAYSRHIVQIYSYHGGDEVR-----------QHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGAKQY  491 (1102)
Q Consensus       424 as~~~d~~v~vwd~~~~~~~~-----------~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d~~i~vWd~~~~~~~~  491 (1102)
                      ++|+..| |.+|.........           ++..-.|| .+|+++.|.+||.  .+++++ .|..|.|||..+|.++.
T Consensus       157 avgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~p  232 (445)
T KOG2139|consen  157 AVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIP  232 (445)
T ss_pred             eeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccc
Confidence            7777655 9999865321111           11223455 6899999999999  577776 56789999999998876


Q ss_pred             EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc-cCceeEEEE
Q 001311          492 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR-KRSLGVVQF  570 (1102)
Q Consensus       492 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~-~~~i~~~~~  570 (1102)
                      ......+.+.-+.|+  +|+++|+.+..|+..++|...............+.|...+|+|+|+.++.... ...+.++.|
T Consensus       233 L~~~glgg~slLkwS--Pdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp~lysl~f  310 (445)
T KOG2139|consen  233 LIPKGLGGFSLLKWS--PDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSPRLYSLTF  310 (445)
T ss_pred             ccccCCCceeeEEEc--CCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCceEEEEee
Confidence            654455667778885  56689999999999999965443333333333448899999999987654433 334555555


Q ss_pred             cCCCCEEE-EEeCCCeEEEEECCCcceEEEEcCC-CCCCCcCeEEEcCCCCEEEEEECCC
Q 001311          571 DTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDAD-GGLPASPRIRFNKDGCLLAVSTNDN  628 (1102)
Q Consensus       571 ~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg  628 (1102)
                      +.....+. .++.....-+-|+..-.   ...+. --.+++.+++|.|.|.+|++....+
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~t---i~ag~~l~cgeaq~lawDpsGeyLav~fKg~  367 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVT---ICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ  367 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhh---hhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence            54433222 33333334444443211   11110 0123578899999999999876543

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.9e-12  Score=129.87  Aligned_cols=289  Identities=12%  Similarity=0.155  Sum_probs=185.0

Q ss_pred             CccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccc
Q 001311          703 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS  782 (1102)
Q Consensus       703 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  782 (1102)
                      ..++++..|..|++|+-.. ..+..++.      .....|++++|-|.+..-++.+-.+.|.+|..+........     
T Consensus       111 ~~fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~-----  178 (445)
T KOG2139|consen  111 IAFAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRN-----  178 (445)
T ss_pred             hhhhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccc-----
Confidence            4567888999999999776 33333332      24578999999998776666667778999987543111000     


Q ss_pred             ccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC
Q 001311          783 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN  860 (1102)
Q Consensus       783 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~  860 (1102)
                        ++.  ..+  .....+.+.+| .+|++|.|.+||..+++++  |..|.|||..++..+....-..+.++-+.||| |+
T Consensus       179 --~~~--~s~--~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dg  250 (445)
T KOG2139|consen  179 --IRM--MST--HHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DG  250 (445)
T ss_pred             --ccc--ccc--cchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CC
Confidence              000  000  01111223335 7899999999999999998  68899999999888766655567799999999 89


Q ss_pred             cEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccc----------ceee-
Q 001311          861 NIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ----------KNRF-  929 (1102)
Q Consensus       861 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~----------~~~~-  929 (1102)
                      .+|..++-|+..++|+.....-.....--++.|...+|+|+|++|..+.. |.-++|.+.-.+..          .... 
T Consensus       251 d~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lli  329 (445)
T KOG2139|consen  251 DVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLI  329 (445)
T ss_pred             CEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeee
Confidence            99999999999999965433222333334568999999999988764432 22344443321110          0000 


Q ss_pred             -----eecCCCCCCCCCCCcEEEEccCCcEEEEEeCC---------eEEEEEcCCceEeeeeccCC-CCCCeeEEEEcC-
Q 001311          930 -----LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET---------QLAIFETTKLECVKQWVPRE-SSAPITHATFSC-  993 (1102)
Q Consensus       930 -----~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~---------~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~sp-  993 (1102)
                           ..+..+...-.+.+.+++|.|.|.+||+...+         .|.+||....-.+....++. .......++|+| 
T Consensus       330 aDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl  409 (445)
T KOG2139|consen  330 ADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPL  409 (445)
T ss_pred             ccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeec
Confidence                 11222222233578999999999999995322         35667766544433322110 122355667766 


Q ss_pred             --CCcEEEEEeCCCeEEEEEc
Q 001311          994 --DSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus       994 --d~~~l~s~s~Dg~I~vwd~ 1012 (1102)
                        ++.+|..+=..|.|.-|++
T Consensus       410 ~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  410 KNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             ccCCcEEEEEeccCceEeeee
Confidence              6677777767777777664

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.50  E-value=5.7e-13  Score=140.27  Aligned_cols=168  Identities=12%  Similarity=0.175  Sum_probs=124.1

Q ss_pred             cCCCeEEEEe-CCeEEEEEcCCCceeeeec----CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-----------
Q 001311          816 KNDSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----------  879 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----------  879 (1102)
                      +.+--+.+|- -|.|.+.|....+..+.+.    .....++|+.|-|.+...++++-.+|.+++||..-           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            4555566665 6888888876533222221    12467999999997777888889999999997531           


Q ss_pred             ---ce--------------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCC
Q 001311          880 ---DE--------------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS  942 (1102)
Q Consensus       880 ---~~--------------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  942 (1102)
                         +.              .+..+.--.+.|...+|+|||++||+.+.||.+||+|..+.+...  ..+..-      +.
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg--~mkSYF------GG  334 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG--VMKSYF------GG  334 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHH--HHHhhc------cc
Confidence               11              111121223578899999999999999999999999999854322  111111      36


Q ss_pred             CcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC
Q 001311          943 DTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSC  993 (1102)
Q Consensus       943 v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp  993 (1102)
                      ..+++|||||+||++ +.|.-|.||.....+.+.-  .++|.++|..++|.|
T Consensus       335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR--GqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR--GQGHKSWVSVVAFDP  384 (636)
T ss_pred             eEEEEEcCCccEEEecCCcceEEEEEeccceEEEe--ccccccceeeEeecc
Confidence            799999999999999 4899999999999888764  569999999999987

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.50  E-value=2.7e-12  Score=136.29  Aligned_cols=195  Identities=11%  Similarity=0.201  Sum_probs=155.5

Q ss_pred             eEEEEe-cCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec-
Q 001311          810 PCFALS-KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-  887 (1102)
Q Consensus       810 ~~l~~s-~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-  887 (1102)
                      ..++++ +...++++|+...|+-++++.|.-+..+....+.+.++..++ -..+|++|+.+|.|..||.++...+..+. 
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~  215 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDA  215 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecC-ccceEEecccCceEEEecchhhhhheeeec
Confidence            344554 344566667778899999999999999988889999999999 88899999999999999998876665553 


Q ss_pred             -----cccc-----cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC--CcEE
Q 001311          888 -----GHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHF  955 (1102)
Q Consensus       888 -----~h~~-----~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l  955 (1102)
                           .|.+     .|+++.|+.||-.+++|+.+|.|.|||+.+.+..    +....+.   ..+|..+.|.+.  +..+
T Consensus       216 ~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl----~~kdh~~---e~pi~~l~~~~~~~q~~v  288 (703)
T KOG2321|consen  216 ASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL----LVKDHGY---ELPIKKLDWQDTDQQNKV  288 (703)
T ss_pred             ccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce----eecccCC---ccceeeecccccCCCceE
Confidence                 2333     4999999999999999999999999999986542    1111111   247888888765  5566


Q ss_pred             EEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311          956 LVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       956 ~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      ++.....++|||-.+|+....+.+   ...+..+|+-|++.++++|.+++.+..|-++..
T Consensus       289 ~S~Dk~~~kiWd~~~Gk~~asiEp---t~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  289 VSMDKRILKIWDECTGKPMASIEP---TSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL  345 (703)
T ss_pred             EecchHHhhhcccccCCceeeccc---cCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence            667778899999999998887754   556999999999999999999988888776654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.49  E-value=3.5e-11  Score=130.61  Aligned_cols=546  Identities=10%  Similarity=0.098  Sum_probs=310.6

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      .+....|++|+....| +|+|+.||.++|-.+.+...-..    .--+++.+.-...+.+.||.+.|.-+.|+.+.+.|-
T Consensus        13 nnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLT   87 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLT   87 (1189)
T ss_pred             CCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEecccccccc
Confidence            4567899999999997 99999999999999876432111    001222223334457999999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee-EEeecCCCCeEEE
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPVYSV  503 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~-~~~~~h~~~v~~v  503 (1102)
                      +...+|.|.||-+-.|.-.... .-......|.+++|+.||.  .+.....||.|.|=.++..+.- +.++|.  ....+
T Consensus        88 tSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv  162 (1189)
T KOG2041|consen   88 TSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHV  162 (1189)
T ss_pred             ccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccce
Confidence            9999999999998877644322 1223456799999999999  5777777888876665432221 223321  12235


Q ss_pred             eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCe-eeE-EEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTT-MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~-~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      .|+  +|...++.+-..|.+.++|....-..   ..+... |+. -.++.-+.+ +.++.-..-...-..|+...|+.+-
T Consensus       163 ~ws--~D~~~~Lf~~ange~hlydnqgnF~~---Kl~~~c~Vn~tg~~s~~~~k-ia~i~w~~g~~~~v~pdrP~lavcy  236 (1189)
T KOG2041|consen  163 LWS--EDLEQALFKKANGETHLYDNQGNFER---KLEKDCEVNGTGIFSNFPTK-IAEIEWNTGPYQPVPPDRPRLAVCY  236 (1189)
T ss_pred             eec--ccHHHHHhhhcCCcEEEecccccHHH---hhhhceEEeeeeeecCCCcc-ccceeeccCccccCCCCCCEEEEEE
Confidence            564  45466777777899999987542111   111111 111 112222211 1111111111223356778899999


Q ss_pred             CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCC
Q 001311          582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  661 (1102)
Q Consensus       582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (1102)
                      ..|.+.|..-.+...-..+...   ..+..+.|+++|..|++++.+..-.- +..+  ..+..                 
T Consensus       237 ~nGr~QiMR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~-~~d~--n~v~F-----------------  293 (1189)
T KOG2041|consen  237 ANGRMQIMRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADE-PTDS--NKVHF-----------------  293 (1189)
T ss_pred             cCceehhhhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccC-cccc--ceEEE-----------------
Confidence            9999988765544332233211   25778999999999999987532100 0000  00000                 


Q ss_pred             CcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc
Q 001311          662 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  741 (1102)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  741 (1102)
                       +++.|                                                          ....++..    ....
T Consensus       294 -ysp~G----------------------------------------------------------~i~gtlkv----pg~~  310 (1189)
T KOG2041|consen  294 -YSPYG----------------------------------------------------------HIVGTLKV----PGSC  310 (1189)
T ss_pred             -eccch----------------------------------------------------------hheEEEec----CCce
Confidence             00111                                                          00011111    2355


Q ss_pred             eEEEEEccCCceEEEeecCceEEeeecccc----------ccCCCCcccccccceeccCCCccccccccCCCCCCCCeeE
Q 001311          742 ISRLIFTNSGNAILALASNAIHLLWKWQRT----------ERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  811 (1102)
Q Consensus       742 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~----------~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~  811 (1102)
                      |++++|-..|-+++.+ -|+.|.+=++...          .+-..+.......+.+||..+.+.....      -....+
T Consensus       311 It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~------V~~~~~  383 (1189)
T KOG2041|consen  311 ITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKT------VTHFEN  383 (1189)
T ss_pred             eeeeEEcCCceEEEEE-ecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhh------hcceee
Confidence            6666666655544332 2334444333211          0001112222334667887776543322      223556


Q ss_pred             EEEecCCCeEEEEe-CCeEEEEEc-CCCceeeeecC-------CCCC---eeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          812 FALSKNDSYVMSAS-GGKISLFNM-MTFKTMATFMP-------PPPA---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       812 l~~s~d~~~las~s-dg~I~iwd~-~~~~~~~~~~~-------~~~~---i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      +++..+--.|+.-. ++.|.-++. ++...+..+.-       -...   |.-.-..- ++.+++.++.+ .+.+|....
T Consensus       384 ~a~~~ehCvL~~~~d~~~i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~  461 (1189)
T KOG2041|consen  384 MAFYREHCVLINRQDDGVIPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVL  461 (1189)
T ss_pred             hheecccEEEEeccccCCCcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEec
Confidence            77776655555555 566555432 22221111110       0111   11111112 56677777765 688887643


Q ss_pred             cee--------------------------------eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccce
Q 001311          880 DEV--------------------------------KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  927 (1102)
Q Consensus       880 ~~~--------------------------------~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~  927 (1102)
                      .+.                                ..++.|..++|.+++.+  .++|..+-..|.|.-+++........
T Consensus       462 pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~  539 (1189)
T KOG2041|consen  462 PKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNS  539 (1189)
T ss_pred             cchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeec
Confidence            211                                12344556778777775  57888888899999999887432111


Q ss_pred             eeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcC---CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeC
Q 001311          928 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETT---KLECVKQWVPRESSAPITHATFSCDSQLVYACFL 1003 (1102)
Q Consensus       928 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~---~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 1003 (1102)
                           .    +....+.++++.-+...+|+- .-|.+.+.|+.   +|..+..+. ......|+.+.|..|+..|+.-.+
T Consensus       540 -----y----~~n~~~y~~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~-~~errDVWd~~Wa~dNp~llAlme  609 (1189)
T KOG2041|consen  540 -----Y----PVNPSIYSIKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIY-TSERRDVWDYEWAQDNPNLLALME  609 (1189)
T ss_pred             -----c----ccCchheeEeeccCcchhhhhhhhceeeeeecccccCcceeeeee-hhhhhhhhhhhhccCCchHHhhhh
Confidence                 1    112367889999999888884 66778887775   344444322 233678999999998877766665


Q ss_pred             CCeEEEEEcC
Q 001311         1004 DATVCVFSAA 1013 (1102)
Q Consensus      1004 Dg~I~vwd~~ 1013 (1102)
                      --.++|++-.
T Consensus       610 Ktrmyifrgn  619 (1189)
T KOG2041|consen  610 KTRMYIFRGN  619 (1189)
T ss_pred             hceEEEecCc
Confidence            5667777643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.49  E-value=1.3e-13  Score=142.43  Aligned_cols=282  Identities=12%  Similarity=0.158  Sum_probs=212.7

Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      ..-..+.++.+|++++.++..|.+-.+|+.+                      +.+... +   .-...|..+.|-.+.+
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t----------------------~~L~~E-i---~v~Etv~Dv~~LHneq  183 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVT----------------------KKLHFE-I---NVMETVRDVTFLHNEQ  183 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeeccc----------------------ceeeee-e---ehhhhhhhhhhhcchH
Confidence            3446788999999999999999999888733                      222221 1   1356688899999999


Q ss_pred             eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEe
Q 001311          820 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  899 (1102)
Q Consensus       820 ~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s  899 (1102)
                      ++|++....++|||- .|..++.++.| ..|..+.|-| .-.+|++++..|.++--|+.+|+.+..+..-.+.+..|+-.
T Consensus       184 ~~AVAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLP-yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN  260 (545)
T KOG1272|consen  184 FFAVAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLP-YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN  260 (545)
T ss_pred             HHHhhhhceEEEecC-CCcEEeehhhc-Cchhhhcccc-hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcC
Confidence            999999999999995 45667777644 4599999999 88899999999999999999999999998888999999999


Q ss_pred             cCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeec
Q 001311          900 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWV  978 (1102)
Q Consensus       900 ~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~  978 (1102)
                      |-+-.+-+|...|+|.+|.....+.     +...-.|.   ++|.++++.++|+|+|+ |.|..++|||+++...+.++.
T Consensus       261 P~NaVih~GhsnGtVSlWSP~skeP-----LvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~  332 (545)
T KOG1272|consen  261 PYNAVIHLGHSNGTVSLWSPNSKEP-----LVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR  332 (545)
T ss_pred             CccceEEEcCCCceEEecCCCCcch-----HHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence            9999999999999999999887553     33333444   48999999999999999 699999999999888766654


Q ss_pred             cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE-cCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC
Q 001311          979 PRESSAPITHATFSCDSQLVYACFLDATVCVFS-AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1057 (1102)
Q Consensus       979 ~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd-~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D 1057 (1102)
                      .   ..+...++||.-|  |++++....|.||. .-.+...+...   |+.+. ....|.  .+.|.|- .+.|-.|..-
T Consensus       333 t---p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~p---Ym~H~-~~~~V~--~l~FcP~-EDvLGIGH~~  400 (545)
T KOG1272|consen  333 T---PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETP---YMNHR-CGGPVE--DLRFCPY-EDVLGIGHAG  400 (545)
T ss_pred             c---CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcc---hhhhc-cCcccc--cceeccH-HHeeeccccC
Confidence            3   3466778888655  34445566799994 33322222222   22211 112244  8899985 4677777777


Q ss_pred             CcEEEEeccCCCc
Q 001311         1058 GGVHVFEPLESEG 1070 (1102)
Q Consensus      1058 g~v~vW~~~~~~~ 1070 (1102)
                      |--.+-=.-.|++
T Consensus       401 G~tsilVPGsGeP  413 (545)
T KOG1272|consen  401 GITSILVPGSGEP  413 (545)
T ss_pred             CceeEeccCCCCC
Confidence            7666666666663

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.49  E-value=4e-13  Score=141.44  Aligned_cols=154  Identities=19%  Similarity=0.294  Sum_probs=116.2

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEe---------eeeee--eccCCCCccccccccCCCCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL---------RNFKV--WDLGACSMPLQAALVKDPGVSVNRV  414 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~---------~~~~~--~~~~~~~~~~~~~~~~~h~~~V~~l  414 (1102)
                      +..|+|+.|-|-++.++..+-.+|.++++|.+-......         ..|.+  |.-.....|..  -..--++.|..+
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~f  296 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINEF  296 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccce
Confidence            479999999998888888888999999998632110000         00111  10000001111  111223589999


Q ss_pred             EEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311          415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  494 (1102)
Q Consensus       415 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~  494 (1102)
                      +|||||++||+.+.||.++|||..+.+.+..   ++.--+...|++|||||+  +|++|+.|-.|.||.+..++.+..-+
T Consensus       297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGq  371 (636)
T KOG2394|consen  297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGV---MKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQ  371 (636)
T ss_pred             eEcCCCceEEEEecCceEEEeeccHHHHHHH---HHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecc
Confidence            9999999999999999999999998765542   333457899999999999  89999999999999999999999999


Q ss_pred             cCCCCeEEEeee
Q 001311          495 GHEAPVYSVCPH  506 (1102)
Q Consensus       495 ~h~~~v~~v~~~  506 (1102)
                      ||..+|..|+|.
T Consensus       372 GHkSWVs~VaFD  383 (636)
T KOG2394|consen  372 GHKSWVSVVAFD  383 (636)
T ss_pred             ccccceeeEeec
Confidence            999999999986

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=5.1e-12  Score=134.25  Aligned_cols=256  Identities=14%  Similarity=0.137  Sum_probs=174.9

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC--CCeEEEEEc
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG--VSVNRVIWS  417 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~s  417 (1102)
                      ++-++|...-+.|..+|||+|++|||..--.|++||+..-..-.                     .-|.  ..|.-.-.|
T Consensus        45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKF---------------------ERhlDae~V~feiLs  103 (703)
T KOG2321|consen   45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKF---------------------ERHLDAEVVDFEILS  103 (703)
T ss_pred             HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeee---------------------eecccccceeEEEec
Confidence            34456888889999999999999999999999999997654322                     2222  345555556


Q ss_pred             cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311          418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      -|-..++.-..|.+|.+-.--+ ...    .++- ...-..++++.-.-.  |+.++....|+-.+++.|..+..|....
T Consensus       104 DD~SK~v~L~~DR~IefHak~G-~hy----~~RI-P~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~  175 (703)
T KOG2321|consen  104 DDYSKSVFLQNDRTIEFHAKYG-RHY----RTRI-PKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDS  175 (703)
T ss_pred             cchhhheEeecCceeeehhhcC-eee----eeec-CcCCccccccCCCcc--EEEeecCcceEEEEcccccccccccccc
Confidence            6666777777777775543221 111    1110 112234555544443  4444445679999999999999998888


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      +.++++..++.  ..+|++|+.+|.|.+||.+.......+..... |.+.   |      .+.....++++.|+.+|-.+
T Consensus       176 ~~lN~v~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~-v~s~---p------g~~~~~svTal~F~d~gL~~  243 (703)
T KOG2321|consen  176 GELNVVSINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASS-VNSH---P------GGDAAPSVTALKFRDDGLHV  243 (703)
T ss_pred             ccceeeeecCc--cceEEecccCceEEEecchhhhhheeeecccc-cCCC---c------cccccCcceEEEecCCceeE
Confidence            89998887543  35889999999999999998766555443222 1111   1      11122357777888777889


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC--CCEEEEEECCCcEEEEEccCC
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--GCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ++|..+|.|.|||+++.+++..-. |+...+|..+.|.+.  +..+++. ....++|||-.+|
T Consensus       244 aVGts~G~v~iyDLRa~~pl~~kd-h~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~G  304 (703)
T KOG2321|consen  244 AVGTSTGSVLIYDLRASKPLLVKD-HGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTG  304 (703)
T ss_pred             EeeccCCcEEEEEcccCCceeecc-cCCccceeeecccccCCCceEEec-chHHhhhcccccC
Confidence            999999999999999988876654 555667888999774  4445544 4578999998887

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.48  E-value=1.4e-10  Score=126.07  Aligned_cols=479  Identities=12%  Similarity=0.128  Sum_probs=278.1

Q ss_pred             CCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCce------------eeeEEEeeccccCEEEEEEcCCCCeeEEEEec
Q 001311          407 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE------------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG  474 (1102)
Q Consensus       407 h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~------------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~  474 (1102)
                      ......|++|+....|+|+|+.||.++|-.+.+...            +....++.||++.|.-+.|+.+.+  .|-|..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence            345789999999999999999999999998765321            112245889999999999998887  689999


Q ss_pred             CCCcEEEEeCCCCeeeEEe--ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccC
Q 001311          475 DDKTIKVWDATNGAKQYIF--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  552 (1102)
Q Consensus       475 ~d~~i~vWd~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~  552 (1102)
                      .+|.|.||-+-.|.-...+  ......|.+++|  ..+|..|+..-.||.|.                            
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavI----------------------------  140 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVI----------------------------  140 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEE----------------------------
Confidence            9999999999888655433  224455777777  45556676666666553                            


Q ss_pred             CceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311          553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       553 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  632 (1102)
                                                +|+-||. |||.-+-.    .   .    ....+.|++|.+.++.+-.+|.+.+
T Consensus       141 --------------------------VGsvdGN-RIwgKeLk----g---~----~l~hv~ws~D~~~~Lf~~ange~hl  182 (1189)
T KOG2041|consen  141 --------------------------VGSVDGN-RIWGKELK----G---Q----LLAHVLWSEDLEQALFKKANGETHL  182 (1189)
T ss_pred             --------------------------EEeeccc-eecchhcc----h---h----eccceeecccHHHHHhhhcCCcEEE
Confidence                                      3444442 55643210    0   0    1234778888887777777888888


Q ss_pred             EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCC-CCCccccCCCCccccccCC
Q 001311          633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM-NGDVRSLADVKPRITEESN  711 (1102)
Q Consensus       633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d  711 (1102)
                      +|.............   .+.           ..+       +.+...++   +....-+ .......|+...++.+...
T Consensus       183 ydnqgnF~~Kl~~~c---~Vn-----------~tg-------~~s~~~~k---ia~i~w~~g~~~~v~pdrP~lavcy~n  238 (1189)
T KOG2041|consen  183 YDNQGNFERKLEKDC---EVN-----------GTG-------IFSNFPTK---IAEIEWNTGPYQPVPPDRPRLAVCYAN  238 (1189)
T ss_pred             ecccccHHHhhhhce---EEe-----------eee-------eecCCCcc---ccceeeccCccccCCCCCCEEEEEEcC
Confidence            876544221111100   000           000       00000001   1111112 2233445578888888888


Q ss_pred             CccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCC
Q 001311          712 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  791 (1102)
Q Consensus       712 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~  791 (1102)
                      |.+.+..-.+...+....        ..-.|..+.|+++|..|+++|.+....-             ......+.++.+-
T Consensus       239 Gr~QiMR~eND~~Pvv~d--------tgm~~vgakWnh~G~vLAvcG~~~da~~-------------~~d~n~v~Fysp~  297 (1189)
T KOG2041|consen  239 GRMQIMRSENDPEPVVVD--------TGMKIVGAKWNHNGAVLAVCGNDSDADE-------------PTDSNKVHFYSPY  297 (1189)
T ss_pred             ceehhhhhcCCCCCeEEe--------cccEeecceecCCCcEEEEccCcccccC-------------ccccceEEEeccc
Confidence            888877655433332222        2357888999999999999987632100             0000112222222


Q ss_pred             CccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCc
Q 001311          792 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS  871 (1102)
Q Consensus       792 ~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~  871 (1102)
                      ...+-.  +..  ....|++++|-..|-.+|.+-|+.|++-+++-.-.-..+.   .   .+.|-......     ..-.
T Consensus       298 G~i~gt--lkv--pg~~It~lsWEg~gLriA~AvdsfiyfanIRP~ykWgy~e---~---TvVy~y~~~e~-----p~y~  362 (1189)
T KOG2041|consen  298 GHIVGT--LKV--PGSCITGLSWEGTGLRIAIAVDSFIYFANIRPEYKWGYIE---E---TVVYVYQKEEL-----PQYG  362 (1189)
T ss_pred             hhheEE--Eec--CCceeeeeEEcCCceEEEEEecceEEEEeecccceEEEee---e---EEEEEEccCCC-----cceE
Confidence            111111  111  5678999999999999999999999988876422211111   1   11111101000     1124


Q ss_pred             EEEEEeeccee-eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecC--CCCCCCC--CCCcEE
Q 001311          872 IQIYNVRVDEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTPTA--QSDTRV  946 (1102)
Q Consensus       872 v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--~~~~~~~--~~v~~~  946 (1102)
                      |.+||..+.+. ++... |   ..+++|+.+.-.|+.-..|+.+.-++.-.... ..-.+...  -|.....  ..|.-.
T Consensus       363 i~Fwdtk~nek~vK~V~-~---~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~~-~~~~l~LCNSIGT~lD~kytdirP~  437 (1189)
T KOG2041|consen  363 IMFWDTKTNEKTVKTVT-H---FENMAFYREHCVLINRQDDGVIPEYSTLENRS-RVYFLQLCNSIGTSLDYKYTDIRPK  437 (1189)
T ss_pred             EEEEecccChhhhhhhc-c---eeehheecccEEEEeccccCCCcchhhhhccc-ceEEEeeecccCCcCCCCcceeeee
Confidence            78899887643 23222 2   45688888877888888888777663211111 01111111  1111000  112222


Q ss_pred             EEccCCcEEEEEeCCeEEEEEcCCceEee-------------------------eec-----cCCCCCCeeEEEEcCCCc
Q 001311          947 QFHQDQIHFLVVHETQLAIFETTKLECVK-------------------------QWV-----PRESSAPITHATFSCDSQ  996 (1102)
Q Consensus       947 ~~spdg~~l~~~~d~~i~iwd~~~~~~~~-------------------------~~~-----~~~h~~~v~~l~~spd~~  996 (1102)
                      -..-+|.++++++...+.+|.....+...                         ++.     ..|..++|-+++.|  .+
T Consensus       438 Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk  515 (1189)
T KOG2041|consen  438 FVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DK  515 (1189)
T ss_pred             EEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhceeeccceeeccCCCcceeeeec--ce
Confidence            33446777777878888888753321110                         011     11335677777775  67


Q ss_pred             EEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          997 LVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       997 ~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +|..+-..|.|.-|.+.++.+..+..
T Consensus       516 ~l~vareSG~I~rySl~nv~l~n~y~  541 (1189)
T KOG2041|consen  516 FLMVARESGGIYRYSLNNVVLTNSYP  541 (1189)
T ss_pred             EEEEEeccCceEEEEecceeeeeccc
Confidence            88889999999999999988776544

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.46  E-value=4.9e-12  Score=126.23  Aligned_cols=326  Identities=14%  Similarity=0.246  Sum_probs=203.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEC-CCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccc
Q 001311          572 TTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAY  650 (1102)
Q Consensus       572 ~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  650 (1102)
                      |..+-+++.+.|.++++|-- +.++.-..+. +.....++++.+.++...|++|-.+|++.-+.+..........+    
T Consensus        34 ~~e~gv~~~s~drtvrv~lkrds~q~wpsI~-~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r----  108 (404)
T KOG1409|consen   34 PKEEGVISVSEDRTVRVWLKRDSGQYWPSIY-HYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLK----  108 (404)
T ss_pred             cCCCCeEEccccceeeeEEeccccccCchhh-hhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhh----
Confidence            33445999999999999954 3444333332 23344688899999999999999999998887654322211111    


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311          651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  730 (1102)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~  730 (1102)
                                                                                       .|             
T Consensus       109 -----------------------------------------------------------------~~-------------  110 (404)
T KOG1409|consen  109 -----------------------------------------------------------------DY-------------  110 (404)
T ss_pred             -----------------------------------------------------------------hh-------------
Confidence                                                                             00             


Q ss_pred             ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311          731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  810 (1102)
Q Consensus       731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~  810 (1102)
                           ..|...+..+.|+.....+++.+.|..+. |...                     +.|..+....    .....+
T Consensus       111 -----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~---------------------e~~~~lg~Y~----~~~~~t  159 (404)
T KOG1409|consen  111 -----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCT---------------------ESGNRLGGYN----FETPAS  159 (404)
T ss_pred             -----hhhhcceeeEEecCCceeEEEeccccceE-EEee---------------------ccCCcccceE----eeccCC
Confidence                 23778888999998888899999886653 3321                     1111111000    011111


Q ss_pred             EEEEecCCCeEEEEe-CCeEEEEE--cCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce-eeeee
Q 001311          811 CFALSKNDSYVMSAS-GGKISLFN--MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKL  886 (1102)
Q Consensus       811 ~l~~s~d~~~las~s-dg~I~iwd--~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l  886 (1102)
                      ++.+.-.  +...|. .|.|..-.  ......+.++.+|.+.+++++|.+ ..++|.+|..|..|.+||+...+ ....+
T Consensus       160 ~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el  236 (404)
T KOG1409|consen  160 ALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYEL  236 (404)
T ss_pred             CCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeee
Confidence            1111111  333443 35544433  345677889999999999999999 88999999999999999997644 34678


Q ss_pred             ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeee-------------------------ecCCCCCCCC-
Q 001311          887 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-------------------------QIPTGRTPTA-  940 (1102)
Q Consensus       887 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-------------------------~~~~~~~~~~-  940 (1102)
                      .+|.+.|..+...+--+.|++++.||.|.+|+++........-+                         .....|-... 
T Consensus       237 ~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg  316 (404)
T KOG1409|consen  237 QGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCG  316 (404)
T ss_pred             ccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence            89999999999988899999999999999999876433221110                         0000000000 


Q ss_pred             CCCcEEEEccCCcEEEEEeCCeEEEEEcCCce-----EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311          941 QSDTRVQFHQDQIHFLVVHETQLAIFETTKLE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       941 ~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~-----~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      ..+-..+-+.-..+...+.+-.+++.|.--..     .......+.-...|+.+.+..+-.+|+|++.|..|+|||+..
T Consensus       317 ~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  317 KAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             hhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhccceeecCCceEEEEEechh
Confidence            11111122222222233444455555432111     111111122255799999999999999999999999999764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.46  E-value=5.6e-10  Score=123.77  Aligned_cols=209  Identities=16%  Similarity=0.196  Sum_probs=131.8

Q ss_pred             eeEEEEecCCCeEEEEe--CCeEEEEEcCC-Cceeee---e----------cCCCCCeeEEEEecCCCcEEEEEe-CCCc
Q 001311          809 VPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT---F----------MPPPPAATFLAFHPQDNNIIAIGM-DDSS  871 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s--dg~I~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~sp~d~~~lasg~-~dg~  871 (1102)
                      ...++++|++++|+++.  +|.|.++++.. +.....   +          +.......++.|+| +++++++.. ....
T Consensus        89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~  167 (345)
T PF10282_consen   89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR  167 (345)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred             cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence            44566667777776665  56777777764 222211   1          11234578899999 888777654 3348


Q ss_pred             EEEEEeecce--eee--eec-cccccceeEEEecCCCEEEEE-cCCCcEEEEEcC--CCcccceeeeecCCCCCCCCCCC
Q 001311          872 IQIYNVRVDE--VKS--KLK-GHSKRITGLAFSHALNVLVSS-GADSQLCVWSSD--GWEKQKNRFLQIPTGRTPTAQSD  943 (1102)
Q Consensus       872 v~vwd~~~~~--~~~--~l~-~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~v  943 (1102)
                      |++|++....  +..  .+. .....-..++|+||++++... -.+++|.++++.  .+.......+.............
T Consensus       168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  247 (345)
T PF10282_consen  168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP  247 (345)
T ss_dssp             EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred             EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence            9999997654  322  221 123345789999999988655 457889999998  44333333333332222112256


Q ss_pred             cEEEEccCCcEEEEE--eCCeEEEEEcC--CceE--eeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEc--CC
Q 001311          944 TRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSA--AN 1014 (1102)
Q Consensus       944 ~~~~~spdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~--~~ 1014 (1102)
                      ..++++|||++|.++  .++.|.+|+++  +++.  +..+..  .......++++|||++|++++ .++.|.+|++  ++
T Consensus       248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~--~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT--GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE--SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC--CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            789999999999996  66799999993  3333  333332  245589999999999999887 4578999976  57


Q ss_pred             ceeEEE
Q 001311         1015 LKLRCR 1020 (1102)
Q Consensus      1015 ~~~~~~ 1020 (1102)
                      |++...
T Consensus       326 G~l~~~  331 (345)
T PF10282_consen  326 GKLTPV  331 (345)
T ss_dssp             TEEEEE
T ss_pred             CcEEEe
Confidence            776543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.7e-11  Score=139.87  Aligned_cols=223  Identities=9%  Similarity=0.022  Sum_probs=140.5

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      ...+..+...+.+.+|||||+.|+.+..  .+..|.+||+.+++...                    +....+.+..++|
T Consensus       191 ~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~~~~~~~~~~~  250 (429)
T PRK03629        191 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHNGAPAF  250 (429)
T ss_pred             CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccCCCCCcCCeEE
Confidence            3344557778999999999998555432  24579999998876543                    1222333556899


Q ss_pred             ccCCCeEEEE-ECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec-CCCc--EEEEeCCCCeee
Q 001311          417 SPDGSLFGVA-YSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGAKQ  490 (1102)
Q Consensus       417 spdg~~las~-~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d~~--i~vWd~~~~~~~  490 (1102)
                      ||||+.|+.. +.+|  .|.+||+++++..+    +..+...+....|+|||+.  |+..+ .++.  |.++|+.+++. 
T Consensus       251 SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d~~~g~~-  323 (429)
T PRK03629        251 SPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVNINGGAP-  323 (429)
T ss_pred             CCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEECCCCCe-
Confidence            9999999865 4444  58899999876433    4445567889999999995  54444 3444  55557666654 


Q ss_pred             EEeecCCCCeEEEeeeecCCccEEEEEeCC---CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311          491 YIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  567 (1102)
Q Consensus       491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  567 (1102)
                      ..+..+........|  +++|++|+..+.+   ..|.+||+.++... .+... ....                     .
T Consensus       324 ~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~---------------------~  378 (429)
T PRK03629        324 QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDE---------------------T  378 (429)
T ss_pred             EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCC---------------------C
Confidence            344334444455666  4666777766543   35788888765422 22111 0111                     2


Q ss_pred             EEEcCCCCEEEEEeCCCe---EEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311          568 VQFDTTKNRFLAAGDDFS---IKFWDMDSVQLLTSIDADGGLPASPRIRFNK  616 (1102)
Q Consensus       568 ~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  616 (1102)
                      ..|+|||++|+.++.++.   +.++++ +|.....+..+.+  .+...+|+|
T Consensus       379 p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~--~~~~p~Wsp  427 (429)
T PRK03629        379 PSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDG--QVKFPAWSP  427 (429)
T ss_pred             ceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCC--CcCCcccCC
Confidence            446666677888776553   777887 4555566654433  577788887

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.44  E-value=1.1e-07  Score=116.58  Aligned_cols=521  Identities=12%  Similarity=0.130  Sum_probs=276.3

Q ss_pred             CCeeEEEEecCCCeEEEE-EecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311          347 SSPMSMDFHPVQQTLLLV-GTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  423 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llas-g~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  423 (1102)
                      ..+...+|.+....++++ +....  .|.+.........  ..+--|+..         ......+.|.++.|-+|...|
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~--~~l~s~~~~---------~~~~~~~~ivs~~yl~d~~~l   90 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSV--EVLASWDAP---------LPDDPNDKIVSFQYLADSESL   90 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCce--eEEEecccc---------CCcCCCCcEEEEEeccCCCcE
Confidence            467778888876654443 33322  3444444332211  111111111         012445789999999999999


Q ss_pred             EEEECCCeEEEE----EccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee---------
Q 001311          424 GVAYSRHIVQIY----SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---------  490 (1102)
Q Consensus       424 as~~~d~~v~vw----d~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~---------  490 (1102)
                      +.+..+|.|.+.    +..+.. +.   ....-..+|.+++||||+.  +|+....++++.+-+ ++-..+         
T Consensus        91 ~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~mt-~~fd~i~E~~l~~~~  163 (928)
T PF04762_consen   91 CIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLMT-RDFDPISEVPLDSDD  163 (928)
T ss_pred             EEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEEe-ccceEEEEeecCccc
Confidence            999999999999    544432 22   1333467999999999999  455555566766553 222111         


Q ss_pred             ---------------EEeecCCCC------------------e----EEEeeeecCCccEEEEEeC---C---CeEEEEE
Q 001311          491 ---------------YIFEGHEAP------------------V----YSVCPHHKENIQFIFSTAL---D---GKIKAWL  527 (1102)
Q Consensus       491 ---------------~~~~~h~~~------------------v----~~v~~~~~~~~~~l~s~s~---d---g~i~~wd  527 (1102)
                                     ..|.|-.+.                  +    ..+.++..+||.++++.+.   .   ..||+|+
T Consensus       164 ~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~  243 (928)
T PF04762_consen  164 FGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS  243 (928)
T ss_pred             cCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC
Confidence                           112111110                  1    1222334788888888775   2   4688886


Q ss_pred             cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC---CCeEEEEECCCcceEEEEcCC-
Q 001311          528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDAD-  603 (1102)
Q Consensus       528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~-  603 (1102)
                      -+ +....+.+    .+                 .+--..++|.|.|+++++.-.   ...|.+|.- +|-.-..|... 
T Consensus       244 Re-G~L~stSE----~v-----------------~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~  300 (928)
T PF04762_consen  244 RE-GELQSTSE----PV-----------------DGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRF  300 (928)
T ss_pred             CC-ceEEeccc----cC-----------------CCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCC
Confidence            54 11111111    11                 112234677777777777643   466778874 44433333322 


Q ss_pred             -CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccc
Q 001311          604 -GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR  682 (1102)
Q Consensus       604 -~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (1102)
                       .....|..+.|++|+..|++...|. |.+|-..+-.-.++..-..                                  
T Consensus       301 ~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~----------------------------------  345 (928)
T PF04762_consen  301 DPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRF----------------------------------  345 (928)
T ss_pred             CCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEc----------------------------------
Confidence             2334689999999999999988664 9999876652222211000                                  


Q ss_pred             cccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCC-ceEEEeecCc
Q 001311          683 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNA  761 (1102)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg  761 (1102)
                                                                            .....+..+.|+|.. ..|...+.+|
T Consensus       346 ------------------------------------------------------~~~~~~~~~~Wdpe~p~~L~v~t~~g  371 (928)
T PF04762_consen  346 ------------------------------------------------------SSSESVNFVKWDPEKPLRLHVLTSNG  371 (928)
T ss_pred             ------------------------------------------------------cCCCCCCceEECCCCCCEEEEEecCC
Confidence                                                                  011122235666643 3355666656


Q ss_pred             eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-CCCeEEEEeCCeEEEEEcCCCcee
Q 001311          762 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSASGGKISLFNMMTFKTM  840 (1102)
Q Consensus       762 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~sdg~I~iwd~~~~~~~  840 (1102)
                      .+..+++                  .|+...+..                  .+| |.-.+++....++.+-.++.....
T Consensus       372 ~~~~~~~------------------~~~v~~s~~------------------~~~~D~g~vaVIDG~~lllTpf~~a~VP  415 (928)
T PF04762_consen  372 QYEIYDF------------------AWDVSRSPG------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVP  415 (928)
T ss_pred             cEEEEEE------------------EEEEEecCC------------------CCccCceEEEEEeCCeEEEecccccCCC
Confidence            6666654                  222211110                  011 222344444456777776643321


Q ss_pred             -----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee--------eeec----------cccccceeEE
Q 001311          841 -----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--------SKLK----------GHSKRITGLA  897 (1102)
Q Consensus       841 -----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--------~~l~----------~h~~~V~~l~  897 (1102)
                           ..+. ....|.+++|++ ++..+|+-..||.|.+|........        ..+.          .-...+..++
T Consensus       416 PPMs~~~l~-~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  493 (928)
T PF04762_consen  416 PPMSSYELE-LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLA  493 (928)
T ss_pred             chHhceEEc-CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEE
Confidence                 2333 346799999999 6766888999999999986442211        1111          1234567888


Q ss_pred             EecCCCEEEEEcCC---CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceE
Q 001311          898 FSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLEC  973 (1102)
Q Consensus       898 ~s~d~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~  973 (1102)
                      |..+...++....+   ..+.++++...+.. ..........    ..+..+...++...++. ..+|.+..++......
T Consensus       494 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~  568 (928)
T PF04762_consen  494 WLNDDTLLVLSDSDSNQSKIVLVDIDDSENS-ASVESSTEVD----GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELS  568 (928)
T ss_pred             EeCCCEEEEEEecCcccceEEEEEeccCCCc-eeEEEEeccC----ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcc
Confidence            98887777766654   56888887433211 1111111111    23344444455442333 5778777665544322


Q ss_pred             ee-eeccCCCCCCeeEEEEcCCCc---EEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC
Q 001311          974 VK-QWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1049 (1102)
Q Consensus       974 ~~-~~~~~~h~~~v~~l~~spd~~---~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~ 1049 (1102)
                      .. .+.  .-... ..++...+..   .++.-+..|.+++    +++.++.         .     +.  +...+   +.
T Consensus       569 ~~~~fp--~~c~~-~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la~---------~-----~t--SF~v~---~~  622 (928)
T PF04762_consen  569 QIVKFP--QPCPW-MEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLAS---------N-----CT--SFAVT---DS  622 (928)
T ss_pred             ccccCC--CCCcE-EEEEEECCccceeEEEEECCCCEEEE----CCEEEec---------C-----Cc--eEEEE---cC
Confidence            11 121  11112 2222222322   3443344455554    3333321         1     33  45444   24


Q ss_pred             EEEEEecCCcEEEEecc
Q 001311         1050 EFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1050 ~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      +|+-......+++.++.
T Consensus       623 ~Ll~TT~~h~l~fv~L~  639 (928)
T PF04762_consen  623 FLLFTTTQHTLKFVHLN  639 (928)
T ss_pred             EEEEEecCceEEEEECc
Confidence            55555567888999888

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.43  E-value=3.8e-08  Score=120.55  Aligned_cols=537  Identities=12%  Similarity=0.143  Sum_probs=287.6

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEE----eCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLW----EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iW----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      ..+.|.++.|-++... ++.+..+|.|.+.    +..+.+...                    ...-...|.|++||||+
T Consensus        74 ~~~~ivs~~yl~d~~~-l~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~  132 (928)
T PF04762_consen   74 PNDKIVSFQYLADSES-LCIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE  132 (928)
T ss_pred             CCCcEEEEEeccCCCc-EEEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence            4578999999999986 7778888999999    665554433                    23346799999999999


Q ss_pred             CeEEEEECCCeEEEEEcc----C---------C--cee--------eeE----------------------EEeeccccC
Q 001311          421 SLFGVAYSRHIVQIYSYH----G---------G--DEV--------RQH----------------------LEIDAHVGG  455 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~----~---------~--~~~--------~~~----------------------~~l~~h~~~  455 (1102)
                      +.||..+.++++.+.+-.    .         |  +.+        .++                      ..+. +.+.
T Consensus       133 Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~  211 (928)
T PF04762_consen  133 ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG  211 (928)
T ss_pred             CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence            999999999998876421    0         0  000        000                      0011 3334


Q ss_pred             EEEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC---CCeEEEE
Q 001311          456 VNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAW  526 (1102)
Q Consensus       456 V~~v~~s~d~~~~~l~s~~~------d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---dg~i~~w  526 (1102)
                      -..|+|-.||.  +++..+.      -+.+|||+ +.|....+-..-.+--.+++|  .|.|++|++.-.   ...|.+|
T Consensus       212 ~~~ISWRGDG~--yFAVss~~~~~~~~R~iRVy~-ReG~L~stSE~v~gLe~~l~W--rPsG~lIA~~q~~~~~~~VvFf  286 (928)
T PF04762_consen  212 RVRISWRGDGE--YFAVSSVEPETGSRRVIRVYS-REGELQSTSEPVDGLEGALSW--RPSGNLIASSQRLPDRHDVVFF  286 (928)
T ss_pred             ceEEEECCCCc--EEEEEEEEcCCCceeEEEEEC-CCceEEeccccCCCccCCccC--CCCCCEEEEEEEcCCCcEEEEE
Confidence            56789999999  5665543      25799999 668765554433333345677  456678887754   3456666


Q ss_pred             EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceE--EEEcCCC
Q 001311          527 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADG  604 (1102)
Q Consensus       527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~  604 (1102)
                      .-... ....+..        .+.+         ....+..+.|++++..|+....|. |.+|-..+....  +.+....
T Consensus       287 ErNGL-rhgeF~l--------~~~~---------~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~  347 (928)
T PF04762_consen  287 ERNGL-RHGEFTL--------RFDP---------EEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS  347 (928)
T ss_pred             ecCCc-EeeeEec--------CCCC---------CCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence            43321 1111111        1111         112445556666666777766554 999998776532  2332222


Q ss_pred             CCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311          605 GLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  683 (1102)
Q Consensus       605 ~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1102)
                      . ..+..+.|+| +...|.+.+.+|.+..++..-.     ...+...                                 
T Consensus       348 ~-~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~-----v~~s~~~---------------------------------  388 (928)
T PF04762_consen  348 S-ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD-----VSRSPGS---------------------------------  388 (928)
T ss_pred             C-CCCCceEECCCCCCEEEEEecCCcEEEEEEEEE-----EEecCCC---------------------------------
Confidence            1 2345599999 5667888888788877654221     0000000                                 


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311          684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  763 (1102)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i  763 (1102)
                                     .++..-.+..-...++++-.+.....+.......+   .-...|..++|++++..+++...||.+
T Consensus       389 ---------------~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l---~~~~~v~~vaf~~~~~~~avl~~d~~l  450 (928)
T PF04762_consen  389 ---------------SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL---ELPSPVNDVAFSPSNSRFAVLTSDGSL  450 (928)
T ss_pred             ---------------CccCceEEEEEeCCeEEEecccccCCCchHhceEE---cCCCCcEEEEEeCCCCeEEEEECCCCE
Confidence                           00001111111113444444444333333322111   134689999999999989999999999


Q ss_pred             EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-C---CeEEEEEcCCCc-
Q 001311          764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFK-  838 (1102)
Q Consensus       764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-d---g~I~iwd~~~~~-  838 (1102)
                      .+|.................     .........  .........+..++|..+...++... +   ..+.++++.... 
T Consensus       451 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  523 (928)
T PF04762_consen  451 SIYEWDLKNMWSVKPPKLLS-----SISLDSMDI--SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSEN  523 (928)
T ss_pred             EEEEecCCCcccccCcchhh-----hcccccccc--cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCC
Confidence            99986543221100000000     000000000  00001345678889988887777665 3   468888874332 


Q ss_pred             --eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee-eeeeccccccceeEEEecCCC---EEEEEcCCC
Q 001311          839 --TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALN---VLVSSGADS  912 (1102)
Q Consensus       839 --~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg  912 (1102)
                        .......-.+.+..+...+ +...++.-..+|.|...+...... +..|..-... ..+....+..   .++.-+..|
T Consensus       524 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~-~~~~~~~~~~~~~~~~GLs~~~  601 (928)
T PF04762_consen  524 SASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPW-MEVCQINGSEDKRVLFGLSSNG  601 (928)
T ss_pred             ceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcE-EEEEEECCccceeEEEEECCCC
Confidence              2223333344455555555 444567778899998766554321 1223221111 2222233333   455555555


Q ss_pred             cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC-ceEeeeeccCCC----CCCe
Q 001311          913 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK-LECVKQWVPRES----SAPI  986 (1102)
Q Consensus       913 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~-~~~~~~~~~~~h----~~~v  986 (1102)
                      .+++   .. .     .+.         ..++++.++  +.+|+. .....++..++.. -....... ..+    ...+
T Consensus       602 ~Ly~---n~-~-----~la---------~~~tSF~v~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~-~~~~~~~de~~  660 (928)
T PF04762_consen  602 RLYA---NS-R-----LLA---------SNCTSFAVT--DSFLLFTTTQHTLKFVHLNSSVEDLEIPP-DSPENSYDERC  660 (928)
T ss_pred             EEEE---CC-E-----EEe---------cCCceEEEE--cCEEEEEecCceEEEEECcCchhhccccc-Ccccccccccc
Confidence            5443   11 1     111         245666663  444444 5666788888871 11111100 000    1122


Q ss_pred             eEEEEcCCCcEEEEEeCCCeEEEEEcCCcee
Q 001311          987 THATFSCDSQLVYACFLDATVCVFSAANLKL 1017 (1102)
Q Consensus       987 ~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~ 1017 (1102)
                      ..   -.-|..|+++--...=-|..+.-|.+
T Consensus       661 R~---VERGsriVt~vp~~~~vVLQmPRGNL  688 (928)
T PF04762_consen  661 RR---VERGSRIVTAVPSDTSVVLQMPRGNL  688 (928)
T ss_pred             cc---CccCCEEEEEeCCCceEEEEcCCCch
Confidence            22   23577777776554545556666655

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=1.4e-10  Score=132.23  Aligned_cols=214  Identities=13%  Similarity=0.118  Sum_probs=135.2

Q ss_pred             CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC---CCeEEEEEccCCceeee
Q 001311          369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ  445 (1102)
Q Consensus       369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~vwd~~~~~~~~~  445 (1102)
                      ..|.+||........                    +..+...+.+.+|||||+.||..+.   +..|.+|++.+++.. .
T Consensus       179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~-~  237 (429)
T PRK03629        179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q  237 (429)
T ss_pred             eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE-E
Confidence            368889887554322                    3456678999999999999997643   457999999988643 2


Q ss_pred             EEEeeccccCEEEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CCe
Q 001311          446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK  522 (1102)
Q Consensus       446 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~  522 (1102)
                         +....+.+..++|+|||+. ++++.+.++  .|++||+.+++.... ..+...+....|+  ++|+.|+..+. ++.
T Consensus       238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wS--PDG~~I~f~s~~~g~  310 (429)
T PRK03629        238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWF--PDSQNLAYTSDQAGR  310 (429)
T ss_pred             ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEEC--CCCCEEEEEeCCCCC
Confidence               2223334557899999996 333334444  599999988876544 3344456667774  56677766665 345


Q ss_pred             EEEE--EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC---CCeEEEEECCCcceE
Q 001311          523 IKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLL  597 (1102)
Q Consensus       523 i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~  597 (1102)
                      ..+|  |+.++. ...+......                     .....|+|+|++++..+.   ...|++||+.+++..
T Consensus       311 ~~Iy~~d~~~g~-~~~lt~~~~~---------------------~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~  368 (429)
T PRK03629        311 PQVYKVNINGGA-PQRITWEGSQ---------------------NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  368 (429)
T ss_pred             ceEEEEECCCCC-eEEeecCCCC---------------------ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            5555  444332 1222211112                     223455666666766543   246889999888643


Q ss_pred             EEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc---EEEEEcc
Q 001311          598 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNG---IKILATS  636 (1102)
Q Consensus       598 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~---i~iwd~~  636 (1102)
                       .+....   ......|+|||++|+..+.++.   +.++++.
T Consensus       369 -~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        369 -VLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             -EeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence             333221   2346889999999999988765   5666653

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.42  E-value=1e-09  Score=112.04  Aligned_cols=283  Identities=9%  Similarity=0.080  Sum_probs=186.9

Q ss_pred             CCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC---ceEEeeeccccccCCCCccccccccee
Q 001311          711 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN---AIHLLWKWQRTERNSSGKATASVAPQL  787 (1102)
Q Consensus       711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~  787 (1102)
                      ++.|.+|++.+.........+    .......+-++|+|+++.|.++..+   |.|..|.+                   
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~i-------------------   71 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRI-------------------   71 (346)
T ss_pred             CCceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEE-------------------
Confidence            578999999843221111111    2256778899999999998888765   55666654                   


Q ss_pred             ccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCC-Cceeee--ecCCCCC----------eeE
Q 001311          788 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMT-FKTMAT--FMPPPPA----------ATF  852 (1102)
Q Consensus       788 w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~-~~~~~~--~~~~~~~----------i~~  852 (1102)
                       |..+|.+....... ....+.+.++++++|++++++.  .|.|.++-++. |.....  ...|.+.          +-.
T Consensus        72 -D~~~G~Lt~ln~~~-~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          72 -DPDDGRLTFLNRQT-LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             -cCCCCeEEEeeccc-cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence             33444422111100 1233448899999999999998  68999999965 433221  2224333          788


Q ss_pred             EEEecCCCcEEEEEeCC-CcEEEEEeecceeeeeec---cccccceeEEEecCCCEEEEEc-CCCcEEEEEcCC--Cccc
Q 001311          853 LAFHPQDNNIIAIGMDD-SSIQIYNVRVDEVKSKLK---GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG--WEKQ  925 (1102)
Q Consensus       853 l~~sp~d~~~lasg~~d-g~v~vwd~~~~~~~~~l~---~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~--~~~~  925 (1102)
                      ..|.| ++++|++.+-. -.|.+|++..|++...-.   .....-..|+|+|++++..... -+++|.+|..+.  ++..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            89999 89888877532 379999999776543211   1233457899999999987666 489999999987  4443


Q ss_pred             ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCC--ceEeeeeccCCCCCCeeEEEEcCCCcEEEEE
Q 001311          926 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus       926 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
                      ..+.+...............+.+++||++|.++  ....|.+|.+..  ++....-....+........|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            344444444334444567889999999999997  445788887754  3322221122345568899999999999999


Q ss_pred             eCCC-eEEEEEc--CCceeEE
Q 001311         1002 FLDA-TVCVFSA--ANLKLRC 1019 (1102)
Q Consensus      1002 s~Dg-~I~vwd~--~~~~~~~ 1019 (1102)
                      +.|+ .|.||..  .+|++..
T Consensus       309 ~q~sd~i~vf~~d~~TG~L~~  329 (346)
T COG2706         309 NQKSDNITVFERDKETGRLTL  329 (346)
T ss_pred             ccCCCcEEEEEEcCCCceEEe
Confidence            8764 5888866  4565543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=2.1e-11  Score=124.15  Aligned_cols=95  Identities=14%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  882 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  882 (1102)
                      ...+++++...|++++|++|. -+.+..||++.+..... +.+..+.|+++..+| ...+||+++-|..|||+|+.+.++
T Consensus       246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             ccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchh
Confidence            356788889999999999998 79999999999988776 889999999999999 889999999999999999999766


Q ss_pred             eeeeccccccceeEEEecC
Q 001311          883 KSKLKGHSKRITGLAFSHA  901 (1102)
Q Consensus       883 ~~~l~~h~~~V~~l~~s~d  901 (1102)
                      +.... -...+++|-+.++
T Consensus       325 l~kvY-vKs~lt~il~~~~  342 (412)
T KOG3881|consen  325 LHKVY-VKSRLTFILLRDD  342 (412)
T ss_pred             hhhhh-hhccccEEEecCC
Confidence            65543 2334666666544

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=5e-10  Score=119.75  Aligned_cols=254  Identities=15%  Similarity=0.234  Sum_probs=166.5

Q ss_pred             cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCC--Cc
Q 001311          784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQD--NN  861 (1102)
Q Consensus       784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d--~~  861 (1102)
                      .+++|+.+++.........  .... ++..|+.|..+.|--..+.+.+|+..+.+.+.. .-|...|+.+++|| +  ..
T Consensus       106 n~~v~~vet~~~~s~~q~k--~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSp-gp~~~  180 (566)
T KOG2315|consen  106 NVLVYNVETGVQRSQIQKK--MQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSP-GPEPP  180 (566)
T ss_pred             ceeeeeeccceehhheehh--hhcC-cccccccchhhhhhhhcceEEEEecCCccceee-eeeccceeeEEecC-CCCCc
Confidence            3456666774433221111  1221 588999998776666678999999987443322 23577899999999 5  23


Q ss_pred             EEEE-----EeCCCcEEEEEeecceeeeee--cc-ccccceeEEEecCCCE-E--EEEcCCC---------cEEEEEcCC
Q 001311          862 IIAI-----GMDDSSIQIYNVRVDEVKSKL--KG-HSKRITGLAFSHALNV-L--VSSGADS---------QLCVWSSDG  921 (1102)
Q Consensus       862 ~las-----g~~dg~v~vwd~~~~~~~~~l--~~-h~~~V~~l~~s~d~~~-l--~s~s~Dg---------~i~vwd~~~  921 (1102)
                      .+|+     ++.-+.|+||...-...-..+  +. ....=..+.|.+-|.- |  ++..-|.         ++.+.++++
T Consensus       181 ~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g  260 (566)
T KOG2315|consen  181 FVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG  260 (566)
T ss_pred             eEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC
Confidence            4443     345568999987632211111  00 1111224677766653 2  3333343         578888773


Q ss_pred             CcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--E-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEE
Q 001311          922 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--V-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV  998 (1102)
Q Consensus       922 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l  998 (1102)
                       +.   .......     .++|.++.|+|+|+.+++  | .-..+.|||++ +..+..+.    .++=+++-|+|.|++|
T Consensus       261 -~s---~~V~L~k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fnp~g~ii  326 (566)
T KOG2315|consen  261 -ES---VSVPLLK-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFNPHGNII  326 (566)
T ss_pred             -ce---EEEecCC-----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEECCCCCEE
Confidence             21   1222221     258999999999998887  4 56789999986 44555543    6678899999999999


Q ss_pred             EEEeCC---CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec------CCcEEEEeccCCC
Q 001311          999 YACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1069 (1102)
Q Consensus       999 ~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1069 (1102)
                      +.++-+   |.|-|||+.+.+++.++.    .        ...+.+.|+| ||.+++|+..      |+.++||++....
T Consensus       327 ~lAGFGNL~G~mEvwDv~n~K~i~~~~----a--------~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~~  393 (566)
T KOG2315|consen  327 LLAGFGNLPGDMEVWDVPNRKLIAKFK----A--------ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGSL  393 (566)
T ss_pred             EEeecCCCCCceEEEeccchhhccccc----c--------CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCce
Confidence            988754   889999999999998776    1        1233699999 6888887765      6899999985543

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.41  E-value=2.5e-12  Score=133.21  Aligned_cols=256  Identities=18%  Similarity=0.235  Sum_probs=191.9

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeee------------------------eeeccCCCCccccc
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF------------------------KVWDLGACSMPLQA  401 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~  401 (1102)
                      .-....+.++.+|++ ++.|+.-|.|-.+|+.+++......+                        -+||-..-.+.   
T Consensus       129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElH---  204 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELH---  204 (545)
T ss_pred             ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEe---
Confidence            345578899999998 66777779999999999887765332                        13332211111   


Q ss_pred             cccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          402 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       402 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                       -++. ...|..+.|-|.--+|++++..|.++--|+.+|+.+..   +..-.+.+..++-+|-+.  ++-+|...|+|.+
T Consensus       205 -Clk~-~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~---~~t~~G~~~vm~qNP~Na--Vih~GhsnGtVSl  277 (545)
T KOG1272|consen  205 -CLKR-HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVAS---IRTGAGRTDVMKQNPYNA--VIHLGHSNGTVSL  277 (545)
T ss_pred             -ehhh-cCchhhhcccchhheeeecccCCceEEEeechhhhhHH---HHccCCccchhhcCCccc--eEEEcCCCceEEe
Confidence             1222 24688889999999999999999999999999998764   445677888999999888  8889999999999


Q ss_pred             EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311          482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  561 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  561 (1102)
                      |...+.+++..+..|.++|.++++  +++|.+++|.+.|..++|||++....+.++.. ......+++|..|        
T Consensus       278 WSP~skePLvKiLcH~g~V~siAv--~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--------  346 (545)
T KOG1272|consen  278 WSPNSKEPLVKILCHRGPVSSIAV--DRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--------  346 (545)
T ss_pred             cCCCCcchHHHHHhcCCCcceEEE--CCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--------
Confidence            999999999888899999999997  67779999999999999999998776665544 3344555555544        


Q ss_pred             cCceeEEEEcCCCCEEEEEeCCCeEEEEE-CCC--cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWD-MDS--VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd-~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                                     +++.+....|.||. .-.  +.....+..|.....|..+.|.|-...|-+|...|.-.+.-...|
T Consensus       347 ---------------lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG  411 (545)
T KOG1272|consen  347 ---------------LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG  411 (545)
T ss_pred             ---------------ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence                           56666667899994 222  222333333444457899999998888888887776666655455

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=3.3e-11  Score=138.36  Aligned_cols=225  Identities=13%  Similarity=0.088  Sum_probs=139.7

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEec--CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  414 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~--d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  414 (1102)
                      .+...+..|...+.+.+|||||++|+.+...  +..|.+||+.+++...                    +..+.+...+.
T Consensus       194 ~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g~~~~~  253 (433)
T PRK04922        194 YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRGINGAP  253 (433)
T ss_pred             CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCCCccCc
Confidence            3444555678889999999999985544322  3469999998876543                    23334455688


Q ss_pred             EEccCCCeEEE-EECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec-CCCc--EEEEeCCCCe
Q 001311          415 IWSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DDKT--IKVWDATNGA  488 (1102)
Q Consensus       415 ~~spdg~~las-~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d~~--i~vWd~~~~~  488 (1102)
                      +|||||+.|+. .+.++  .|++||+.+++...    +..+.......+|+|||+.  |+..+ .++.  |.++|+.+++
T Consensus       254 ~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        254 SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----LTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             eECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----CccCCCCccceEECCCCCE--EEEEECCCCCceEEEEECCCCC
Confidence            99999998864 45555  59999999886432    5556556678999999995  44433 4444  7777777766


Q ss_pred             eeEEeecCCCCeEEEeeeecCCccEEEEEeCCC---eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311          489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  565 (1102)
Q Consensus       489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  565 (1102)
                      ... +..+.......+|  +++|++|+..+.++   .|.+||+.++... .+. +.......                  
T Consensus       328 ~~~-lt~~g~~~~~~~~--SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p------------------  384 (433)
T PRK04922        328 AER-LTFQGNYNARASV--SPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESP------------------  384 (433)
T ss_pred             eEE-eecCCCCccCEEE--CCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCc------------------
Confidence            433 3223333445666  45667777665433   6899998765432 222 11112223                  


Q ss_pred             eEEEEcCCCCEEEEEeC---CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311          566 GVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  616 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  616 (1102)
                         .|+|+|++++..+.   .+.|.++++.. .....+....  ..+...+|+|
T Consensus       385 ---~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp  432 (433)
T PRK04922        385 ---SFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP  432 (433)
T ss_pred             ---eECCCCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence               45555556665543   34688888854 4445444332  2456677776

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.41  E-value=5.5e-10  Score=110.95  Aligned_cols=238  Identities=14%  Similarity=0.213  Sum_probs=156.1

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE-E
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV-A  426 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las-~  426 (1102)
                      ....++|+.|..- +++|.. .-.+||+.+.-+....+.+                ..+ .-.+.-+-|  -.++||- |
T Consensus         7 ~~lsvs~NQD~Sc-Fava~~-~Gfriyn~~P~ke~~~r~~----------------~~~-G~~~veMLf--R~N~laLVG   65 (346)
T KOG2111|consen    7 KTLSVSFNQDHSC-FAVATD-TGFRIYNCDPFKESASRQF----------------IDG-GFKIVEMLF--RSNYLALVG   65 (346)
T ss_pred             ceeEEEEccCCce-EEEEec-CceEEEecCchhhhhhhcc----------------ccC-chhhhhHhh--hhceEEEec
Confidence            3455999999984 776665 5578898876433221111                000 011222222  2445554 3


Q ss_pred             ECC------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCeeeEEeecCC--
Q 001311          427 YSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHE--  497 (1102)
Q Consensus       427 ~~d------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~~~~~~~~~~h~--  497 (1102)
                      |.+      ..|.|||-...+++.   ++. -..+|.+|.+.++-    |+..- ++.|.||... +.+.++.+.-..  
T Consensus        66 Gg~~pky~pNkviIWDD~k~~~i~---el~-f~~~I~~V~l~r~r----iVvvl-~~~I~VytF~~n~k~l~~~et~~NP  136 (346)
T KOG2111|consen   66 GGSRPKYPPNKVIIWDDLKERCII---ELS-FNSEIKAVKLRRDR----IVVVL-ENKIYVYTFPDNPKLLHVIETRSNP  136 (346)
T ss_pred             CCCCCCCCCceEEEEecccCcEEE---EEE-eccceeeEEEcCCe----EEEEe-cCeEEEEEcCCChhheeeeecccCC
Confidence            332      479999955555443   232 46789999998763    33332 5689999988 566666665322  


Q ss_pred             CCeEEEeeeecCCccEEEEEe-CCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311          498 APVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  574 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  574 (1102)
                      ....+++  +..+..+|+.-| .-|.|++-|+.....  ...+..|...|                     .|++++-+|
T Consensus       137 kGlC~~~--~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~I---------------------acv~Ln~~G  193 (346)
T KOG2111|consen  137 KGLCSLC--PTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDI---------------------ACVALNLQG  193 (346)
T ss_pred             CceEeec--CCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCce---------------------eEEEEcCCc
Confidence            2244443  344434555443 468999999876544  34455555544                     455555555


Q ss_pred             CEEEEEeCCCe-EEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          575 NRFLAAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       575 ~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ..+++++..|+ |||||..+|+.+..+........|.+++|||+..+|+++++.|+++|+.+...
T Consensus       194 t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  194 TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            68999998887 79999999999999876555668999999999999999999999999998764

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.41  E-value=5.1e-09  Score=109.16  Aligned_cols=171  Identities=16%  Similarity=0.177  Sum_probs=134.5

Q ss_pred             CCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC-cEEEEEeecceeeeeecccccccee
Q 001311          817 NDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-SIQIYNVRVDEVKSKLKGHSKRITG  895 (1102)
Q Consensus       817 d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-~v~vwd~~~~~~~~~l~~h~~~V~~  895 (1102)
                      +|.+++..+.|+..|.+...+-.++  -+|.+.|.-..+.. ++.-++.|..|| .+-|||..+++. ..+...-+.|.+
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iq--v~~~~~VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e~-kr~e~~lg~I~a  406 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQ--VGKKGGVRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGEV-KRIEKDLGNIEA  406 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEE--cCCCCceEEEEEcc-CCcceEEeccCCceEEEEecCCceE-EEeeCCccceEE
Confidence            7889999999998888876655443  24677788888888 777899999999 999999988764 555666788999


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC----CeEEEEEcCC
Q 001311          896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE----TQLAIFETTK  970 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d----~~i~iwd~~~  970 (1102)
                      +..++||++++.+.....|.+.|++++...   .+....     .+-|+.++|+|+++++|.+ -+    ..|++||+.+
T Consensus       407 v~vs~dGK~~vvaNdr~el~vididngnv~---~idkS~-----~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~  478 (668)
T COG4946         407 VKVSPDGKKVVVANDRFELWVIDIDNGNVR---LIDKSE-----YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDG  478 (668)
T ss_pred             EEEcCCCcEEEEEcCceEEEEEEecCCCee---Eecccc-----cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCC
Confidence            999999999999998899999999997642   222111     1478999999999999986 33    4799999999


Q ss_pred             ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe
Q 001311          971 LECVKQWVPRESSAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus       971 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 1002 (1102)
                      ++....-..   .+.=.+-+|.||+++|.--+
T Consensus       479 ~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         479 GKIYDVTTP---TAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             CeEEEecCC---cccccCcccCCCCcEEEEEe
Confidence            988766543   33345678999999887554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=6.3e-11  Score=135.44  Aligned_cols=204  Identities=12%  Similarity=0.084  Sum_probs=133.7

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---CcEEEEEeecceeeeeeccccccceeEEEecCCC
Q 001311          827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  903 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  903 (1102)
                      ..|.++|.. +...+.+..+...+.+.+|+| |++.|+..+.+   ..|++||+.+++.. .+....+.+.+.+|+|||+
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRR-VVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence            467888874 444555556777899999999 88888877643   36999999888653 3333445567899999999


Q ss_pred             EEE-EEcCCCcEEEEEc--CCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe--CCeEEEE--EcCCceEeee
Q 001311          904 VLV-SSGADSQLCVWSS--DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIF--ETTKLECVKQ  976 (1102)
Q Consensus       904 ~l~-s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--d~~i~iw--d~~~~~~~~~  976 (1102)
                      .|+ +.+.++...||.+  .++..     .... .+.   .......|+|||++|+...  ++...||  +..++.....
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~-----~~lt-~~~---~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~l  323 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGL-----RRLT-QSS---GIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRV  323 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCc-----EECC-CCC---CCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEE
Confidence            887 5677887777655  33321     1111 111   2346788999999988743  3444555  5555544332


Q ss_pred             eccCCCCCCeeEEEEcCCCcEEEEEeCCC---eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311          977 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus       977 ~~~~~h~~~v~~l~~spd~~~l~s~s~Dg---~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
                      .. .  .......+|||||++|+..+.++   .|++||+.+++... +.      .+.  . ..  ...|+| |++.|+.
T Consensus       324 t~-~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt------~~~--~-~~--~p~~sp-dg~~l~~  387 (427)
T PRK02889        324 TF-T--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT------DTT--R-DE--SPSFAP-NGRYILY  387 (427)
T ss_pred             ec-C--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc------CCC--C-cc--CceECC-CCCEEEE
Confidence            21 1  23345678999999998877654   69999999887543 22      110  1 22  578999 5777776


Q ss_pred             EecCC
Q 001311         1054 GLSDG 1058 (1102)
Q Consensus      1054 ~~~Dg 1058 (1102)
                      .+.++
T Consensus       388 ~~~~~  392 (427)
T PRK02889        388 ATQQG  392 (427)
T ss_pred             EEecC
Confidence            66554

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=4.8e-11  Score=119.14  Aligned_cols=365  Identities=15%  Similarity=0.179  Sum_probs=213.5

Q ss_pred             ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-----eeEEeecCC------------CCeEEEeeeecCCccEEE
Q 001311          453 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-----KQYIFEGHE------------APVYSVCPHHKENIQFIF  515 (1102)
Q Consensus       453 ~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-----~~~~~~~h~------------~~v~~v~~~~~~~~~~l~  515 (1102)
                      .+-|.+|.|...|.  +|+||..+|.|.++.-....     ....++.|.            ..|..+.|....+...++
T Consensus        25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            45789999999999  89999999999999743222     223444454            347778888888888899


Q ss_pred             EEeCCCeEEEEEcCCCCCeee-e----cCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001311          516 STALDGKIKAWLYDNLGSRVD-Y----EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD  590 (1102)
Q Consensus       516 s~s~dg~i~~wd~~~~~~~~~-~----~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  590 (1102)
                      ..+.|++|++|-+........ +    ......+.++..                           .+.+..|-.+.   
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~---------------------------p~~~~~~~~ve---  152 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL---------------------------PVEGRHDLEVE---  152 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeec---------------------------eeeccccceee---
Confidence            999999999998876443320 0    000111111110                           11111111111   


Q ss_pred             CCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhh
Q 001311          591 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA  670 (1102)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (1102)
                         ..+.+.+ .+.|.-.|++++++.|+..++++. |=.|.+|++.-..+.+                            
T Consensus       153 ---a~prRv~-aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sF----------------------------  199 (433)
T KOG1354|consen  153 ---ASPRRVY-ANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSF----------------------------  199 (433)
T ss_pred             ---eeeeeec-cccceeEeeeeeecCccceEeecc-ceeeeeccccccCCce----------------------------
Confidence               0111222 244555799999999999988774 6789999875332211                            


Q ss_pred             HhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccC
Q 001311          671 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS  750 (1102)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  750 (1102)
                                                                  .+.|+..    .....       -..-|++..|+|.
T Consensus       200 --------------------------------------------nIVDIKP----~nmEe-------LteVITsaEFhp~  224 (433)
T KOG1354|consen  200 --------------------------------------------NIVDIKP----ANMEE-------LTEVITSAEFHPH  224 (433)
T ss_pred             --------------------------------------------eEEEccc----cCHHH-------HHHHHhhhccCHh
Confidence                                                        1222221    11111       2345677788886


Q ss_pred             C-ceEEEeecCceEEeeeccccccCCCCcccccccceeccC-CCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCe
Q 001311          751 G-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP-PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  828 (1102)
Q Consensus       751 g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~  828 (1102)
                      . +.++-.++.|+|++.|+.....-..       ..+++.. ..+.- ...+.+  --..|..+.|+++|+|+++-+--+
T Consensus       225 ~cn~f~YSSSKGtIrLcDmR~~aLCd~-------hsKlfEepedp~~-rsffse--iIsSISDvKFs~sGryilsRDylt  294 (433)
T KOG1354|consen  225 HCNVFVYSSSKGTIRLCDMRQSALCDA-------HSKLFEEPEDPSS-RSFFSE--IISSISDVKFSHSGRYILSRDYLT  294 (433)
T ss_pred             HccEEEEecCCCcEEEeechhhhhhcc-------hhhhhccccCCcc-hhhHHH--HhhhhhceEEccCCcEEEEeccce
Confidence            4 4456666779999999864322100       0111111 11100 000100  234588899999999999888789


Q ss_pred             EEEEEc-CCCceeeeecCCC------------CC---eeEEEEecCCCcEEEEEeCCCcEEEEEeeccee-eeeeccccc
Q 001311          829 ISLFNM-MTFKTMATFMPPP------------PA---ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSK  891 (1102)
Q Consensus       829 I~iwd~-~~~~~~~~~~~~~------------~~---i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~  891 (1102)
                      |++||+ ...+.+.+++-|.            ..   -..++|+. ++.++++|+....+++|++..|.. -.++.+...
T Consensus       295 vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~  373 (433)
T KOG1354|consen  295 VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRK  373 (433)
T ss_pred             eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcceeeccccccc
Confidence            999999 4556666666553            12   24578998 888999999999999999765532 122222222


Q ss_pred             c--ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001311          892 R--ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  967 (1102)
Q Consensus       892 ~--V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd  967 (1102)
                      .  ...+   ..-+.+.+++......+|-..         +...       ..+...+|+|....+|++..+.++||.
T Consensus       374 ~~~~~~~---~k~~~V~~~g~r~~~~~~vd~---------ldf~-------kkilh~aWhp~en~ia~aatnnlyif~  432 (433)
T KOG1354|consen  374 NMKPRKV---LKLRLVSSSGKRKRDEISVDA---------LDFR-------KKILHTAWHPKENSIAVAATNNLYIFQ  432 (433)
T ss_pred             CCccccc---ccceeeecCCCccccccccch---------hhhh-------hHHHhhccCCccceeeeeecCceEEec
Confidence            1  1111   112334444444332222110         0000       246788999999999998777777763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.40  E-value=4.4e-10  Score=118.51  Aligned_cols=362  Identities=14%  Similarity=0.190  Sum_probs=224.7

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC------
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK------  477 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~------  477 (1102)
                      +.....++..++|||.|.+|++....+ |.+|+-..+..+..   +.  ...|..+.|+|.++  +|+|-+...      
T Consensus        28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~---~~--~~~V~~~~fSP~~k--YL~tw~~~pi~~pe~   99 (561)
T COG5354          28 FESENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVR---FR--HPDVKYLDFSPNEK--YLVTWSREPIIEPEI   99 (561)
T ss_pred             ccccCcchhheeecCcchheehhhccc-eEEccccchhheee---ee--cCCceecccCcccc--eeeeeccCCccChhh
Confidence            444567899999999999999887666 89998877664332   32  35799999999999  788865433      


Q ss_pred             ---------cEEEEeCCCCeeeEEeecCCCC--eE-EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC-CCCee
Q 001311          478 ---------TIKVWDATNGAKQYIFEGHEAP--VY-SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWC  544 (1102)
Q Consensus       478 ---------~i~vWd~~~~~~~~~~~~h~~~--v~-~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v  544 (1102)
                               .+.|||+.+|..+..+.+...+  .+ -+.|+.+.  .+++-- ....+.++++...-....+.. ....+
T Consensus       100 e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D--~y~ARv-v~~sl~i~e~t~n~~~~p~~~lr~~gi  176 (561)
T COG5354         100 EISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD--KYVARV-VGSSLYIHEITDNIEEHPFKNLRPVGI  176 (561)
T ss_pred             ccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc--hhhhhh-ccCeEEEEecCCccccCchhhccccce
Confidence                     4999999999999999876655  44 35565433  344333 336788888622111111111 12456


Q ss_pred             eEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311          545 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS  624 (1102)
Q Consensus       545 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  624 (1102)
                      ....++|.+..        .. .+.|.|.     ..+.++++++|.+..++.+.+-....-  .-..+.|.+.|.+|++-
T Consensus       177 ~dFsisP~~n~--------~~-la~~tPE-----k~~kpa~~~i~sIp~~s~l~tk~lfk~--~~~qLkW~~~g~~ll~l  240 (561)
T COG5354         177 LDFSISPEGNH--------DE-LAYWTPE-----KLNKPAMVRILSIPKNSVLVTKNLFKV--SGVQLKWQVLGKYLLVL  240 (561)
T ss_pred             eeEEecCCCCC--------ce-EEEEccc-----cCCCCcEEEEEEccCCCeeeeeeeEee--cccEEEEecCCceEEEE
Confidence            66677776531        00 1112221     146788999999987766554432211  12357788888877754


Q ss_pred             ECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCc
Q 001311          625 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP  704 (1102)
Q Consensus       625 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1102)
                      ...      +..+++...                                                              
T Consensus       241 ~~t------~~ksnKsyf--------------------------------------------------------------  252 (561)
T COG5354         241 VMT------HTKSNKSYF--------------------------------------------------------------  252 (561)
T ss_pred             EEE------eeeccccee--------------------------------------------------------------
Confidence            321      111110000                                                              


Q ss_pred             cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEee--cCceEEeeeccccccCCCCccccc
Q 001311          705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALA--SNAIHLLWKWQRTERNSSGKATAS  782 (1102)
Q Consensus       705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~  782 (1102)
                           .+..+.++++.....+..        ..-.+.|..++|.|.++.+++++  ....+.++++..            
T Consensus       253 -----gesnLyl~~~~e~~i~V~--------~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~------------  307 (561)
T COG5354         253 -----GESNLYLLRITERSIPVE--------KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG------------  307 (561)
T ss_pred             -----ccceEEEEeeccccccee--------ccccccceeeeecccCCceeEEecccccceeeccccc------------
Confidence                 001223333331111100        01357899999999999887766  456777776522            


Q ss_pred             ccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-C---CeEEEEEcCCCceee-eecCCCCCeeEEEEec
Q 001311          783 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMA-TFMPPPPAATFLAFHP  857 (1102)
Q Consensus       783 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-d---g~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp  857 (1102)
                                 .+....     ....=..+.|+|.+++++.++ |   |.|.+||....-.+. .+.+.  ..+-+.|+|
T Consensus       308 -----------Nl~~~~-----Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wsp  369 (561)
T COG5354         308 -----------NLRFYF-----PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSP  369 (561)
T ss_pred             -----------ceEEec-----CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccC
Confidence                       111111     233345678999999999977 5   789999987655443 55533  356678999


Q ss_pred             CCCcEEEEEe------CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC
Q 001311          858 QDNNIIAIGM------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS  912 (1102)
Q Consensus       858 ~d~~~lasg~------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  912 (1102)
                       |+.++.+..      .|..|.|||+...+..        ..+.+.|.|.+++.-+.+.+.
T Consensus       370 -d~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         370 -DGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             -CceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence             888887764      4678999998754322        567788888888777766654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=1.4e-10  Score=133.45  Aligned_cols=216  Identities=12%  Similarity=0.061  Sum_probs=141.4

Q ss_pred             CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC---CCeEEEEEccCCceeee
Q 001311          369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---RHIVQIYSYHGGDEVRQ  445 (1102)
Q Consensus       369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---d~~v~vwd~~~~~~~~~  445 (1102)
                      ..|.+||.......                    .+..|...|.+.+|||||+.|+..+.   +..|.+||+.+++... 
T Consensus       182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-  240 (435)
T PRK05137        182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-  240 (435)
T ss_pred             eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-
Confidence            47888998654332                    25677889999999999999998764   4689999999886432 


Q ss_pred             EEEeeccccCEEEEEEcCCCCeeEEEEecCCCc--EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CC-
Q 001311          446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG-  521 (1102)
Q Consensus       446 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg-  521 (1102)
                         +..+.+.+.+.+|+|||+. ++++.+.++.  |.+||+.+++. ..+..+........|+  +||+.|+..+. +| 
T Consensus       241 ---l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~  313 (435)
T PRK05137        241 ---VGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS  313 (435)
T ss_pred             ---eecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence               4556677889999999996 4456665555  77889887765 4455566656666764  56677776653 33 


Q ss_pred             -eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001311          522 -KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL  597 (1102)
Q Consensus       522 -~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~  597 (1102)
                       .|.+||+..+.. ..+......+                     ....|+|+|+.|+....+   ..|.+||+.++. .
T Consensus       314 ~~Iy~~d~~g~~~-~~lt~~~~~~---------------------~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~  370 (435)
T PRK05137        314 PQLYVMNADGSNP-RRISFGGGRY---------------------STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-E  370 (435)
T ss_pred             CeEEEEECCCCCe-EEeecCCCcc---------------------cCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-e
Confidence             577777654322 2221112222                     234455666666665432   468889986554 3


Q ss_pred             EEEcCCCCCCCcCeEEEcCCCCEEEEEECC------CcEEEEEccCC
Q 001311          598 TSIDADGGLPASPRIRFNKDGCLLAVSTND------NGIKILATSDG  638 (1102)
Q Consensus       598 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~~  638 (1102)
                      ..+... .  .+....|+|||+.|+..+.+      ..+.++++..+
T Consensus       371 ~~lt~~-~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~  414 (435)
T PRK05137        371 RILTSG-F--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR  414 (435)
T ss_pred             EeccCC-C--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence            333322 1  36678999999998876553      24667776544

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.39  E-value=1.5e-09  Score=116.28  Aligned_cols=205  Identities=12%  Similarity=0.091  Sum_probs=129.7

Q ss_pred             eEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceee--
Q 001311          810 PCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVK--  883 (1102)
Q Consensus       810 ~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~--  883 (1102)
                      ..++++|||+++.+..   +..|.+.|+.+++.+.++.-.. ...-...+. +..+ + -+.||......+.+ ++..  
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~~~-~-~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DTFF-M-HCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-CccE-E-EeecCceEEEEecCCCceEEe
Confidence            3567788888887765   5789999999999888876422 122222222 2222 1 22344444433322 2211  


Q ss_pred             --eeecccccccee-EEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC----CCCCCCCcEEEEccCCcEE
Q 001311          884 --SKLKGHSKRITG-LAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIHF  955 (1102)
Q Consensus       884 --~~l~~h~~~V~~-l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~spdg~~l  955 (1102)
                        ..+.+-...+.. -.|++ ||+++..... |+|.+.|+.+.+.............    .-.+....-++++++|+.+
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l  262 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI  262 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence              111110011100 14455 8888877666 9999999766543333333322111    0112344559999999999


Q ss_pred             EEEe---C--------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311          956 LVVH---E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       956 ~~~~---d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .+..   .        +.|.++|..+++.+..+..   ...+..++++||++ +|++.+ .++.|.|+|..+++.+.++.
T Consensus       263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v---G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL---GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC---CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            8842   1        5899999999999998875   45899999999999 877666 57889999999999999883

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=4.7e-11  Score=136.44  Aligned_cols=226  Identities=15%  Similarity=0.137  Sum_probs=136.0

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEecC--CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  414 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  414 (1102)
                      .....+..+...+.+.+|||||+.|+.+...+  ..|.+||+.+++...                    +....+.+.+.
T Consensus       186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~~~~~  245 (427)
T PRK02889        186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGSNSAP  245 (427)
T ss_pred             CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCCccce
Confidence            33444556888999999999999855544333  369999999886543                    22233456789


Q ss_pred             EEccCCCeEEE-EECCCeEEEEEc--cCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeC--CCCee
Q 001311          415 IWSPDGSLFGV-AYSRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAK  489 (1102)
Q Consensus       415 ~~spdg~~las-~~~d~~v~vwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~--~~~~~  489 (1102)
                      +|||||+.|+. .+.++...||.+  .++. .+   .+..|...+....|+|||+. +++++..++...||.+  .+++.
T Consensus       246 ~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~~g~~  320 (427)
T PRK02889        246 AWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPASGGAA  320 (427)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECCCCce
Confidence            99999998875 577887666654  4443 22   25556666778899999995 2334444566666654  44443


Q ss_pred             eEEeecCCCCeEEEeeeecCCccEEEEEeCCC---eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311          490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG---KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                      . .+..+........|  +++|++|+..+.++   .|.+||+.+++... +.. ......                    
T Consensus       321 ~-~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~-~~~~~~--------------------  375 (427)
T PRK02889        321 Q-RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LTD-TTRDES--------------------  375 (427)
T ss_pred             E-EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEE-ccC-CCCccC--------------------
Confidence            2 22222222334555  56778888776654   69999987754322 211 111223                    


Q ss_pred             EEEEcCCCCEEEEEeCCC---eEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311          567 VVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  616 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  616 (1102)
                       ..|+|+++.|+..+.++   .+.+.++ ++.....+....+  .+...+|+|
T Consensus       376 -p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp  424 (427)
T PRK02889        376 -PSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG--DVREPSWGP  424 (427)
T ss_pred             -ceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence             34555555666655332   3556666 4555555543322  466677776

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=6.7e-10  Score=118.76  Aligned_cols=112  Identities=20%  Similarity=0.305  Sum_probs=91.6

Q ss_pred             CCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---CcEEEEEee
Q 001311          805 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVR  878 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~  878 (1102)
                      ..++|.++.|+++++-+++..   -..+.|||++ +..+..+  ..++-+++-|+| .|++|+.++-+   |.+-|||+.
T Consensus       269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEecc
Confidence            478999999999999887765   3789999986 4555555  356778999999 89999888755   799999999


Q ss_pred             cceeeeeeccccccceeEEEecCCCEEEEEcC------CCcEEEEEcCCC
Q 001311          879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------DSQLCVWSSDGW  922 (1102)
Q Consensus       879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~~  922 (1102)
                      +.+++..+..-..  +-..|+|||++++|++.      |+.++||++.+.
T Consensus       345 n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  345 NRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             chhhccccccCCc--eEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence            9999888876544  44789999999998875      677999999773

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.37  E-value=1e-09  Score=121.67  Aligned_cols=252  Identities=15%  Similarity=0.218  Sum_probs=164.1

Q ss_pred             CCCeeEEEEecCCCeEEEEe-C----CeEEEEEcCCC--ce--eeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEE
Q 001311          806 EEAVPCFALSKNDSYVMSAS-G----GKISLFNMMTF--KT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY  875 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s-d----g~I~iwd~~~~--~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw  875 (1102)
                      ......++++|++++|.+.. .    +.|..|++...  ++  +............++++| ++++|+++. .+|.|.++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~  114 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF  114 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence            34567789999999999886 2    57888888753  32  333332345567899999 788777775 58999999


Q ss_pred             Eeec-ceeeee---ec--c--------ccccceeEEEecCCCEEEEEcC-CCcEEEEEcCCCc--ccceeeeecCCCCCC
Q 001311          876 NVRV-DEVKSK---LK--G--------HSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWE--KQKNRFLQIPTGRTP  938 (1102)
Q Consensus       876 d~~~-~~~~~~---l~--~--------h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~--~~~~~~~~~~~~~~~  938 (1102)
                      ++.. +.+...   +.  +        -....-++.|+||+++|++... ...|.+|+++...  ......+....+   
T Consensus       115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G---  191 (345)
T PF10282_consen  115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG---  191 (345)
T ss_dssp             EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred             EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence            9986 443322   11  1        1233568999999998887642 3469999998755  322233344444   


Q ss_pred             CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--CceE--eeeeccC--CC--CCCeeEEEEcCCCcEEEEEe-CCCeE
Q 001311          939 TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLEC--VKQWVPR--ES--SAPITHATFSCDSQLVYACF-LDATV 1007 (1102)
Q Consensus       939 ~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~--~~~~--~~~~~~~--~h--~~~v~~l~~spd~~~l~s~s-~Dg~I 1007 (1102)
                        ...+.++|+|||+++.+.  .++.|.+|++.  ++..  +..+...  +.  ......|+++|||++|+++. .+.+|
T Consensus       192 --~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI  269 (345)
T PF10282_consen  192 --SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSI  269 (345)
T ss_dssp             --SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEE
T ss_pred             --CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEE
Confidence              356999999999999885  57889999988  4432  2222211  11  23688999999999987766 56789


Q ss_pred             EEEEcC--CceeE--EEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe-cCCcEEEEeccCCCccccc
Q 001311         1008 CVFSAA--NLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus      1008 ~vwd~~--~~~~~--~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~-~Dg~v~vW~~~~~~~~~~~ 1074 (1102)
                      .+|+++  +|++.  ..+.     ..|     ..|..+.++| ++++|+++. .++.|.+|++....+.+..
T Consensus       270 ~vf~~d~~~g~l~~~~~~~-----~~G-----~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG~l~~  330 (345)
T PF10282_consen  270 SVFDLDPATGTLTLVQTVP-----TGG-----KFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTGKLTP  330 (345)
T ss_dssp             EEEEECTTTTTEEEEEEEE-----ESS-----SSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred             EEEEEecCCCceEEEEEEe-----CCC-----CCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCCcEEE
Confidence            999993  34433  2222     112     4577899999 577776665 6679999998755544443

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=4.9e-11  Score=119.02  Aligned_cols=155  Identities=12%  Similarity=0.225  Sum_probs=108.9

Q ss_pred             eEEEEecCCCcEEEEEeC----------CCcEEEEEeec-ceeeeeecc-ccccceeEEEecCCCEEEEE--cCCCcEEE
Q 001311          851 TFLAFHPQDNNIIAIGMD----------DSSIQIYNVRV-DEVKSKLKG-HSKRITGLAFSHALNVLVSS--GADSQLCV  916 (1102)
Q Consensus       851 ~~l~~sp~d~~~lasg~~----------dg~v~vwd~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~s~--s~Dg~i~v  916 (1102)
                      ..+.|++ .|.+|++-..          -|...+|.+.. +.....+.- ..++|.+++|+|+|+.+|+.  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4567888 6665554332          13455555532 223333332 34579999999999987654  45679999


Q ss_pred             EEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEc
Q 001311          917 WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETTKLECVKQWVPRESSAPITHATFS  992 (1102)
Q Consensus       917 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s  992 (1102)
                      ||++. +.    ......      ..+..+.|+|+|++|+++.    .|.|.+||..+.+.+....    ...++.++||
T Consensus        88 yd~~~-~~----i~~~~~------~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~----~~~~t~~~Ws  152 (194)
T PF08662_consen   88 YDVKG-KK----IFSFGT------QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE----HSDATDVEWS  152 (194)
T ss_pred             EcCcc-cE----eEeecC------CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc----cCcEEEEEEc
Confidence            99973 21    222221      2567899999999999952    4679999999999887754    3457999999


Q ss_pred             CCCcEEEEEeC------CCeEEEEEcCCceeEEEeC
Q 001311          993 CDSQLVYACFL------DATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       993 pd~~~l~s~s~------Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      |||++|++++.      |..++||++. |+++.+..
T Consensus       153 PdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  153 PDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            99999998874      7889999985 66766554

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=1.7e-10  Score=132.49  Aligned_cols=215  Identities=13%  Similarity=0.142  Sum_probs=138.1

Q ss_pred             CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC---CeEEEEEccCCceeee
Q 001311          369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQ  445 (1102)
Q Consensus       369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~~  445 (1102)
                      ..|.|||.......                    .+..|...+.+.+|||||+.|+.++.+   ..|.+||+.+++... 
T Consensus       184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-  242 (433)
T PRK04922        184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-  242 (433)
T ss_pred             EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence            46899998644332                    245667789999999999999988743   469999999886432 


Q ss_pred             EEEeeccccCEEEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CCe
Q 001311          446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGK  522 (1102)
Q Consensus       446 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~  522 (1102)
                         +..+.+...+.+|+|||+. ++++.+.++  .|++||+.+++. ..+..+.......+|  +++|+.|+..+. +|.
T Consensus       243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~--spDG~~l~f~sd~~g~  315 (433)
T PRK04922        243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTW--APDGKSIYFTSDRGGR  315 (433)
T ss_pred             ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEE--CCCCCEEEEEECCCCC
Confidence               3344455668899999996 334555555  599999988875 445555555556676  456677776654 454


Q ss_pred             --EEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC---CeEEEEECCCcceE
Q 001311          523 --IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLL  597 (1102)
Q Consensus       523 --i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~  597 (1102)
                        |.++++.+++. ..+......                     ....+|+|+|++++..+.+   ..|.+||+.+++..
T Consensus       316 ~~iy~~dl~~g~~-~~lt~~g~~---------------------~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~  373 (433)
T PRK04922        316 PQIYRVAASGGSA-ERLTFQGNY---------------------NARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR  373 (433)
T ss_pred             ceEEEEECCCCCe-EEeecCCCC---------------------ccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence              55555544322 111111111                     1234566666667665433   36999999887754


Q ss_pred             EEEcCCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEccC
Q 001311          598 TSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSD  637 (1102)
Q Consensus       598 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~  637 (1102)
                       .+. ++.  ......|+|||++|+..+.+   +.|.+++...
T Consensus       374 -~Lt-~~~--~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g  412 (433)
T PRK04922        374 -TLT-PGS--LDESPSFAPNGSMVLYATREGGRGVLAAVSTDG  412 (433)
T ss_pred             -ECC-CCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence             333 221  24567999999988877653   3466676643

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=1.6e-10  Score=132.83  Aligned_cols=232  Identities=11%  Similarity=0.050  Sum_probs=144.5

Q ss_pred             CCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCC
Q 001311          329 FSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD  406 (1102)
Q Consensus       329 ~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (1102)
                      +|..|........+..|...+.+.+|||||++|+.+..  .+..|.+||+.+++...                    +..
T Consensus       184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~  243 (435)
T PRK05137        184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN  243 (435)
T ss_pred             EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence            33334333444555678889999999999998555443  24689999999886543                    345


Q ss_pred             CCCCeEEEEEccCCCeEEE-EECCCe--EEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec-CC--CcEE
Q 001311          407 PGVSVNRVIWSPDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG-DD--KTIK  480 (1102)
Q Consensus       407 h~~~V~~l~~spdg~~las-~~~d~~--v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~-~d--~~i~  480 (1102)
                      +.+.+.+.+|||||+.|+. .+.++.  |.+||+.+++..+    +..+........|+|||+.  |+..+ .+  ..|+
T Consensus       244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy  317 (435)
T PRK05137        244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR----LTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY  317 (435)
T ss_pred             CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE----ccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence            5667888999999998864 455554  7778888876433    5556667788999999995  44333 33  3688


Q ss_pred             EEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC---CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311          481 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       481 vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      +||+.+++.. .+..+.+.+....|  +++|+.|+..+.+   ..|.+||+..... ..+.. ...+..           
T Consensus       318 ~~d~~g~~~~-~lt~~~~~~~~~~~--SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~-----------  381 (435)
T PRK05137        318 VMNADGSNPR-RISFGGGRYSTPVW--SPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEG-----------  381 (435)
T ss_pred             EEECCCCCeE-EeecCCCcccCeEE--CCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCC-----------
Confidence            8897766543 34334455555666  4566777766543   3577788754322 22211 112333           


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCC------CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDD------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  616 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  616 (1102)
                                ..|+|+|+.|+..+.+      ..++++|+..+.. ..+...+   .+...+|+|
T Consensus       382 ----------p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp  432 (435)
T PRK05137        382 ----------PTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP  432 (435)
T ss_pred             ----------CeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence                      3455555556554332      3688888866544 4444222   355667766

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=2e-10  Score=117.09  Aligned_cols=256  Identities=12%  Similarity=0.089  Sum_probs=176.2

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEe-cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGT-NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~-~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      .....|+.++|.-|++.=+..+. .|..+.............    .|++.         ........|..++..  ...
T Consensus        53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~--dg~  117 (412)
T KOG3881|consen   53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA--DGT  117 (412)
T ss_pred             chhhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc--CCE
Confidence            35578888888887765455554 555566555554443332    12221         233445566666553  456


Q ss_pred             EEEEECCCeEEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecCC--CcEEEEeCCCCeeeEEeec----
Q 001311          423 FGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD--KTIKVWDATNGAKQYIFEG----  495 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d--~~i~vWd~~~~~~~~~~~~----  495 (1102)
                      |++|-.+|.+.+|..+.+..- .....+..+ .++..|.-++.... ++++||..  ..++|||+...+.+.+-+.    
T Consensus       118 Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD  195 (412)
T KOG3881|consen  118 LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPND  195 (412)
T ss_pred             EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCc
Confidence            778889999999999854311 011123323 56778888877775 67779988  8899999998866654321    


Q ss_pred             ---CCC--CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEE
Q 001311          496 ---HEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  570 (1102)
Q Consensus       496 ---h~~--~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  570 (1102)
                         -.-  +++++.|.+......|++++.-+.||+||.+..+..         |.++.|.           ...+.++..
T Consensus       196 ~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP---------V~~fd~~-----------E~~is~~~l  255 (412)
T KOG3881|consen  196 RLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP---------VAQFDFL-----------ENPISSTGL  255 (412)
T ss_pred             cccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcc---------eeEeccc-----------cCcceeeee
Confidence               122  345566655434678999999999999999864332         2222222           225666666


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCcceEEE-EcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          571 DTTKNRFLAAGDDFSIKFWDMDSVQLLTS-IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       571 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      .|+++++++|...|.+..||++.++.... +.+.  .+.++++..+|.+++|++++-|..|||+|+.+.
T Consensus       256 ~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktr  322 (412)
T KOG3881|consen  256 TPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR  322 (412)
T ss_pred             cCCCcEEEEecccchhheecccCceeeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence            77778899999999999999999988766 5544  457999999999999999999999999999885

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.31  E-value=8.8e-09  Score=105.25  Aligned_cols=258  Identities=12%  Similarity=0.191  Sum_probs=174.4

Q ss_pred             CCCCeeEEEEecCCCeEEEEe----CCeEEEEEcCC--Cceee--eecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEE
Q 001311          805 PEEAVPCFALSKNDSYVMSAS----GGKISLFNMMT--FKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIY  875 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s----dg~I~iwd~~~--~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vw  875 (1102)
                      ....++-++++|+++.|.++.    +|.|.-|.+..  |+...  .......+.+.+++++ ++++|+++. ..|.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            567788999999999988875    36677777764  44322  2222233448899999 888888876 45799999


Q ss_pred             Eeec-ceeeee--ecccccc----------ceeEEEecCCCEEEEEc--CCCcEEEEEcCCCcccceeeeecCCCCCCCC
Q 001311          876 NVRV-DEVKSK--LKGHSKR----------ITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTA  940 (1102)
Q Consensus       876 d~~~-~~~~~~--l~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  940 (1102)
                      -+.. |.+...  +..|.+.          +-...|.|++++|++.+  .|+ |.+|+++.+............|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence            9865 432221  2234444          77889999999999875  454 9999999877655544444444     


Q ss_pred             CCCcEEEEccCCcEEEEE--eCCeEEEEEcCCc-eEeeeec------cC-CCCCCeeEEEEcCCCcEEEEEeC-CCeEEE
Q 001311          941 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKL-ECVKQWV------PR-ESSAPITHATFSCDSQLVYACFL-DATVCV 1009 (1102)
Q Consensus       941 ~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~-~~~~~~~------~~-~h~~~v~~l~~spd~~~l~s~s~-Dg~I~v 1009 (1102)
                      ...+.+.|+|++++..+.  -+++|.+|..+.. ..+..+.      .. ........|.+++||++|.++.. ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            356999999999998884  6799999988773 2222111      10 11557788999999999987753 346888


Q ss_pred             EEcCC--ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-CcEEEEeccCCCcccccCCCC
Q 001311         1010 FSAAN--LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-GGVHVFEPLESEGKWGVPPPV 1078 (1102)
Q Consensus      1010 wd~~~--~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-g~v~vW~~~~~~~~~~~~~~~ 1078 (1102)
                      |.++.  +++.. +.  ...     .+...|....|.+. +++|++++.| ..|.++.++...+.+.....+
T Consensus       271 f~V~~~~g~L~~-~~--~~~-----teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~  333 (346)
T COG2706         271 FSVDPDGGKLEL-VG--ITP-----TEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGRLTLLGRY  333 (346)
T ss_pred             EEEcCCCCEEEE-EE--Eec-----cCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCceEEecccc
Confidence            87753  33322 11  011     22255668999994 6777666665 589999998877666665443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.29  E-value=2.2e-10  Score=114.34  Aligned_cols=151  Identities=20%  Similarity=0.417  Sum_probs=105.5

Q ss_pred             eEEEEecCCCeEEEEEecC---------CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          350 MSMDFHPVQQTLLLVGTNV---------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~d---------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      ..+.|+|+|++|++....+         +...||.++..                ..+... +.....++|.+++|+|+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~----------------~~~~~~-i~l~~~~~I~~~~WsP~g   71 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK----------------NIPVES-IELKKEGPIHDVAWSPNG   71 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC----------------CCccce-eeccCCCceEEEEECcCC
Confidence            4688999999987766521         12344443221                111111 122345579999999999


Q ss_pred             CeEEEE--ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC---CCcEEEEeCCCCeeeEEeec
Q 001311          421 SLFGVA--YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIFEG  495 (1102)
Q Consensus       421 ~~las~--~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~---d~~i~vWd~~~~~~~~~~~~  495 (1102)
                      +.+|+.  ..++.|.+||++ ++.+.   .+  +...+..|.|+|+|+  +|++++.   .|.|.+||+++.+.+..+. 
T Consensus        72 ~~favi~g~~~~~v~lyd~~-~~~i~---~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-  142 (194)
T PF08662_consen   72 NEFAVIYGSMPAKVTLYDVK-GKKIF---SF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-  142 (194)
T ss_pred             CEEEEEEccCCcccEEEcCc-ccEeE---ee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-
Confidence            998765  356799999997 33332   23  356788999999999  6776654   4679999999999888876 


Q ss_pred             CCCCeEEEeeeecCCccEEEEEeC------CCeEEEEEcC
Q 001311          496 HEAPVYSVCPHHKENIQFIFSTAL------DGKIKAWLYD  529 (1102)
Q Consensus       496 h~~~v~~v~~~~~~~~~~l~s~s~------dg~i~~wd~~  529 (1102)
                      |. .+..++|  +++|++|+++..      |+.++||+..
T Consensus       143 ~~-~~t~~~W--sPdGr~~~ta~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  143 HS-DATDVEW--SPDGRYLATATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cC-cEEEEEE--cCCCCEEEEEEeccceeccccEEEEEec
Confidence            43 3667787  567789988874      7889999885

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.28  E-value=3.6e-10  Score=113.16  Aligned_cols=214  Identities=12%  Similarity=0.137  Sum_probs=140.4

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEE-ccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS-YHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd-~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                      .+.||.+.|++...-|-..-+.+.+.|.+++||- .+.++....+  ...-..+++++.+.++..  .|+.|-..|++.-
T Consensus        19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI--~~~mP~~~~~~~y~~e~~--~L~vg~~ngtvte   94 (404)
T KOG1409|consen   19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSI--YHYMPSPCSAMEYVSESR--RLYVGQDNGTVTE   94 (404)
T ss_pred             hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchh--hhhCCCCceEeeeeccce--EEEEEEecceEEE
Confidence            5789999999999999888999999999999995 4444433221  112346789999999888  6888889999988


Q ss_pred             EeCCC----CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311          482 WDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       482 Wd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      +.+..    -..++....|...|..+.|+..+  .++++.+.|..+.---.+.+..+-.+.                  +
T Consensus        95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~--e~V~s~~~dk~~~~hc~e~~~~lg~Y~------------------~  154 (404)
T KOG1409|consen   95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTH--EWVLSTGKDKQFAWHCTESGNRLGGYN------------------F  154 (404)
T ss_pred             EEhhhhhhhcchhhhhhhhhcceeeEEecCCc--eeEEEeccccceEEEeeccCCcccceE------------------e
Confidence            87653    34456667899999999886544  689999998877532222222211110                  0


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC--CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD--SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                      ......    ..+.-  .+...|...|.|.+-.+.  .-.++.++.++  ...+.+++|.+....|.+|..|..+.+||+
T Consensus       155 ~~~~t~----~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdi  226 (404)
T KOG1409|consen  155 ETPASA----LQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDI  226 (404)
T ss_pred             eccCCC----Cceee--EEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEec
Confidence            000000    00000  023334444555444433  33445555544  558999999999999999999999999998


Q ss_pred             cCCccceeecccc
Q 001311          636 SDGIRLLRTFENL  648 (1102)
Q Consensus       636 ~~~~~~~~~~~~~  648 (1102)
                      .........+.+|
T Consensus       227 gg~~g~~~el~gh  239 (404)
T KOG1409|consen  227 GGRKGTAYELQGH  239 (404)
T ss_pred             cCCcceeeeeccc
Confidence            6654334444433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.28  E-value=1.8e-09  Score=124.79  Aligned_cols=205  Identities=14%  Similarity=0.116  Sum_probs=139.3

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---CcEEEEEeecceeeeeeccccccceeEEEecCCC
Q 001311          827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  903 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  903 (1102)
                      ..|.++|..... .+.+..+...+...+|+| |+++|+.+..+   ..|++||+.+++.. .+..+.+.+.+++|+|||+
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~-~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQRE-KVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EeecCCCCccceEECCCCC
Confidence            358888876433 455555666788999999 89988887654   48999999887643 3344556677899999998


Q ss_pred             EEEE-EcCCC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeC----CeEEEEEcCCceEeee
Q 001311          904 VLVS-SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQ  976 (1102)
Q Consensus       904 ~l~s-~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d----~~i~iwd~~~~~~~~~  976 (1102)
                      .|+. .+.++  .|++||+.+++..     .... +.   .......|+|||++|+...+    ..|+++|+.+++....
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~-----~l~~-~~---~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l  317 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLT-----RLTN-GP---GIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRL  317 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEE-----ECCC-CC---CCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence            7764 44444  5888898875431     1111 11   13456789999999887422    2688889887765433


Q ss_pred             eccCCCCCCeeEEEEcCCCcEEEEEeCCC---eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311          977 WVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus       977 ~~~~~h~~~v~~l~~spd~~~l~s~s~Dg---~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
                      .   .+...+..+.|+|||++|+.++.++   .|.+||+.++.... +.      ..  .. ..  ...|+| |++.|+.
T Consensus       318 ~---~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~------~~--~~-~~--~p~~sp-dg~~l~~  381 (417)
T TIGR02800       318 T---FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LT------DT--GL-DE--SPSFAP-NGRMILY  381 (417)
T ss_pred             e---cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-cc------CC--CC-CC--CceECC-CCCEEEE
Confidence            2   2345677889999999999888776   89999998865432 22      11  01 11  467899 5777777


Q ss_pred             EecCCc
Q 001311         1054 GLSDGG 1059 (1102)
Q Consensus      1054 ~~~Dg~ 1059 (1102)
                      .+.++.
T Consensus       382 ~~~~~~  387 (417)
T TIGR02800       382 ATTRGG  387 (417)
T ss_pred             EEeCCC
Confidence            666653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.27  E-value=1.2e-08  Score=107.92  Aligned_cols=132  Identities=11%  Similarity=0.144  Sum_probs=93.6

Q ss_pred             CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc--CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEE
Q 001311          869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRV  946 (1102)
Q Consensus       869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  946 (1102)
                      ...++|+++.... +....+-.++|...+|.|+++.+++.+  .+..+.++|+.+.     ...-.++.      .-..+
T Consensus       254 esnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~------~rNT~  321 (561)
T COG5354         254 ESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQ------KRNTI  321 (561)
T ss_pred             cceEEEEeecccc-cceeccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecCCc------ccccc
Confidence            3568888887433 333335678999999999988877654  6788999999873     12222222      33678


Q ss_pred             EEccCCcEEEE-Ee---CCeEEEEEcCCceEee-eeccCCCCCCeeEEEEcCCCcEEEEEe------CCCeEEEEEcCCc
Q 001311          947 QFHQDQIHFLV-VH---ETQLAIFETTKLECVK-QWVPRESSAPITHATFSCDSQLVYACF------LDATVCVFSAANL 1015 (1102)
Q Consensus       947 ~~spdg~~l~~-~~---d~~i~iwd~~~~~~~~-~~~~~~h~~~v~~l~~spd~~~l~s~s------~Dg~I~vwd~~~~ 1015 (1102)
                      .|+|.+++++. +.   .|.+.+||....-.+. .+.    .....-+.|+||++++.+..      .|..|.|||+...
T Consensus       322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~----~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~  397 (561)
T COG5354         322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN----GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA  397 (561)
T ss_pred             cccCcccEEEEecCCccccceEEeccCCceEEEEEee----cCCceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence            89999999998 43   3689999988755444 443    33456678999999987765      4788999998654


Q ss_pred             e
Q 001311         1016 K 1016 (1102)
Q Consensus      1016 ~ 1016 (1102)
                      .
T Consensus       398 ~  398 (561)
T COG5354         398 K  398 (561)
T ss_pred             h
Confidence            3

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.26  E-value=1.1e-08  Score=109.64  Aligned_cols=237  Identities=10%  Similarity=0.079  Sum_probs=149.7

Q ss_pred             EecCCCeEEEEe-----------CCeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCcEEEEEe-C-CCcEE
Q 001311          814 LSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-D-DSSIQ  873 (1102)
Q Consensus       814 ~s~d~~~las~s-----------dg~I~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~-~-dg~v~  873 (1102)
                      ++||++.++++.           ++.|.+||..+.+.+.++.....       ....++++| ||++|++.. . +..|.
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~  131 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG  131 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence            999999877664           36799999999999988874322       244789999 898888766 3 68999


Q ss_pred             EEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCC-cEEEEcc-C
Q 001311          874 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-TRVQFHQ-D  951 (1102)
Q Consensus       874 vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~sp-d  951 (1102)
                      +.|+.+++.+.++.-.. ...-...+ +...++ -+.||......++...........++.+...   .+ ..-.|++ |
T Consensus       132 VvD~~~~kvv~ei~vp~-~~~vy~t~-e~~~~~-~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~---~v~~rP~~~~~d  205 (352)
T TIGR02658       132 VVDLEGKAFVRMMDVPD-CYHIFPTA-NDTFFM-HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE---YLINHPAYSNKS  205 (352)
T ss_pred             EEECCCCcEEEEEeCCC-CcEEEEec-CCccEE-EeecCceEEEEecCCCceEEeeeeeecCCcc---ccccCCceEcCC
Confidence            99999999888776422 11111221 112221 1234444433333211111111122111000   00 0114566 9


Q ss_pred             CcEEEEEeCCeEEEEEcCC-----ceEeeeeccCC-----CCCCeeEEEEcCCCcEEEEEeC----------CCeEEEEE
Q 001311          952 QIHFLVVHETQLAIFETTK-----LECVKQWVPRE-----SSAPITHATFSCDSQLVYACFL----------DATVCVFS 1011 (1102)
Q Consensus       952 g~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~-----h~~~v~~l~~spd~~~l~s~s~----------Dg~I~vwd 1011 (1102)
                      |+++.++.+|.|.+.|+.+     ......+....     ..+.+.-+++++|++.++....          .+.|.++|
T Consensus       206 g~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD  285 (352)
T TIGR02658       206 GRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVD  285 (352)
T ss_pred             CcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEE
Confidence            9999998889999999543     33332221110     1333445999999999887542          24799999


Q ss_pred             cCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001311         1012 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus      1012 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
                      ..+++.+.++.    ....     .+  .++++|+ ++ +|.+.. .++.|.+.|+.+++
T Consensus       286 ~~t~kvi~~i~----vG~~-----~~--~iavS~D-gkp~lyvtn~~s~~VsViD~~t~k  333 (352)
T TIGR02658       286 AKTGKRLRKIE----LGHE-----ID--SINVSQD-AKPLLYALSTGDKTLYIFDAETGK  333 (352)
T ss_pred             CCCCeEEEEEe----CCCc-----ee--eEEECCC-CCeEEEEeCCCCCcEEEEECcCCe
Confidence            99999999887    2211     33  8999994 66 666555 68899999999887

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=1.8e-09  Score=124.65  Aligned_cols=226  Identities=10%  Similarity=0.058  Sum_probs=135.7

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEecC--CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  414 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d--~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  414 (1102)
                      .+......+...+...+|||||++|+.+...+  ..|.+||+.+++...                    +....+.+...
T Consensus       189 ~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~~  248 (430)
T PRK00178        189 ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGAP  248 (430)
T ss_pred             CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCCe
Confidence            34455567888899999999999865555443  369999998886543                    22223445678


Q ss_pred             EEccCCCeEEE-EECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCee
Q 001311          415 IWSPDGSLFGV-AYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAK  489 (1102)
Q Consensus       415 ~~spdg~~las-~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~vWd~~~~~~  489 (1102)
                      +|||||++|+. .+.++  .|.+||+.+++..+    +..+........|+|||+. ++++...++  .|.++|+.+++.
T Consensus       249 ~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        249 AWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----VTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             EECCCCCEEEEEEccCCCceEEEEECCCCCeEE----cccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCCE
Confidence            99999999885 44454  68888999876432    4456666777899999996 333433333  578888888775


Q ss_pred             eEEeecCCCCeEEEeeeecCCccEEEEEeC-CC--eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311          490 QYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                      ..... .........|  +++|+.|+..+. ++  .|.+||+.+++... +.. ......                    
T Consensus       324 ~~lt~-~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~-~~~~~~--------------------  378 (430)
T PRK00178        324 ERVTF-VGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD-TSLDES--------------------  378 (430)
T ss_pred             EEeec-CCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC-CCCCCC--------------------
Confidence            43221 1122223455  456677766654 33  47788887654321 111 111112                    


Q ss_pred             EEEEcCCCCEEEEEeCC---CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311          567 VVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  616 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  616 (1102)
                       ..|+|+|+.++..+.+   ..|+++++.. .....+....  ..+...+|+|
T Consensus       379 -p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~--g~~~~p~ws~  427 (430)
T PRK00178        379 -PSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ--GEVREPSWSP  427 (430)
T ss_pred             -ceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC--CCcCCCccCC
Confidence             2455555666655432   3577777743 3334444322  2355666766

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.24  E-value=1.2e-09  Score=109.37  Aligned_cols=277  Identities=14%  Similarity=0.218  Sum_probs=172.4

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCee---EEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER---LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      ...+-|.+|.|..+|.+ ||||..+|.|.++.-.....   .....|+..+..   ..+..  --.-...|..+.|.+++
T Consensus        23 teadiis~vef~~~Ge~-LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepE---FDYLk--SleieEKinkIrw~~~~   96 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGER-LATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPE---FDYLK--SLEIEEKINKIRWLDDG   96 (433)
T ss_pred             chhcceeeEEeecccce-EeecCCCCeEEEeecccccccceeeeeeeeccCcc---cchhh--hhhhhhhhhhceecCCC
Confidence            35578999999999996 99999999999997543221   011111111000   00000  01123578899999865


Q ss_pred             C--eEEEEECCCeEEEEEccCCceee--------------------------------eEEE-eeccccCEEEEEEcCCC
Q 001311          421 S--LFGVAYSRHIVQIYSYHGGDEVR--------------------------------QHLE-IDAHVGGVNDIAFSHPN  465 (1102)
Q Consensus       421 ~--~las~~~d~~v~vwd~~~~~~~~--------------------------------~~~~-l~~h~~~V~~v~~s~d~  465 (1102)
                      .  .+...+.|.+|++|.+.......                                +... -.+|.--|++|.++.|.
T Consensus        97 n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~  176 (433)
T KOG1354|consen   97 NLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK  176 (433)
T ss_pred             CccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence            4  56677899999999876432111                                0000 13577779999999998


Q ss_pred             CeeEEEEecCCCcEEEEeCCCCee---eEEeecC-----CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee--
Q 001311          466 KQLCVITCGDDKTIKVWDATNGAK---QYIFEGH-----EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--  535 (1102)
Q Consensus       466 ~~~~l~s~~~d~~i~vWd~~~~~~---~~~~~~h-----~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--  535 (1102)
                      .  .++++ +|=.|.+|+++--..   +..++.+     +..|++..|++... ++++-.+..|+|++-|++.....-  
T Consensus       177 E--t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~c-n~f~YSSSKGtIrLcDmR~~aLCd~h  252 (433)
T KOG1354|consen  177 E--TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHC-NVFVYSSSKGTIRLCDMRQSALCDAH  252 (433)
T ss_pred             c--eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHc-cEEEEecCCCcEEEeechhhhhhcch
Confidence            8  56655 477899999874322   2222222     34577788887655 567777778999999998532211  


Q ss_pred             --eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC-CCcceEEEEcCCCCC------
Q 001311          536 --DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-DSVQLLTSIDADGGL------  606 (1102)
Q Consensus       536 --~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~------  606 (1102)
                        .+..+..+.        . +.+...--..|.-+.|+.+|+++++-+ --+|++||+ ...+++.+++.|...      
T Consensus       253 sKlfEepedp~--------~-rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~~lr~kLc~  322 (433)
T KOG1354|consen  253 SKLFEEPEDPS--------S-RSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHEYLRSKLCS  322 (433)
T ss_pred             hhhhccccCCc--------c-hhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehHhHHHHHHH
Confidence              111111111        0 000011112455567777777777644 358999999 456667776654321      


Q ss_pred             ----CCc---CeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311          607 ----PAS---PRIRFNKDGCLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       607 ----~~v---~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                          ..|   ..++|+.++.++++|+....+++++...|..
T Consensus       323 lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk  363 (433)
T KOG1354|consen  323 LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK  363 (433)
T ss_pred             HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence                112   3588999999999999999999999766633

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=2.1e-09  Score=121.98  Aligned_cols=228  Identities=10%  Similarity=0.069  Sum_probs=132.9

Q ss_pred             eeccCCCCeeEEEEecCCCe--EEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          341 RTLNQGSSPMSMDFHPVQQT--LLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~--llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      .+......+..-+|||||+.  ++++...+|  .|.+.++.+++...                    +....+.....+|
T Consensus       179 ~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------lt~~~g~~~~p~w  238 (428)
T PRK01029        179 PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------ILALQGNQLMPTF  238 (428)
T ss_pred             EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------eecCCCCccceEE
Confidence            33345556678899999986  333544444  58888888776543                    2223445567899


Q ss_pred             ccCCCeEEEEEC-----CCeEEEEEccCCc--eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE--eCCC-
Q 001311          417 SPDGSLFGVAYS-----RHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW--DATN-  486 (1102)
Q Consensus       417 spdg~~las~~~-----d~~v~vwd~~~~~--~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW--d~~~-  486 (1102)
                      ||||+.||..+.     |-.+.+|++.++.  ..+.+  ..++.+.....+|+|||+. ++++...++...+|  ++.. 
T Consensus       239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l--t~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~~~~  315 (428)
T PRK01029        239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL--LNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQIDPE  315 (428)
T ss_pred             CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe--ecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECccc
Confidence            999999987653     2234457776532  12221  2223344567899999995 23334456655555  4432 


Q ss_pred             CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC---CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccC
Q 001311          487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  563 (1102)
Q Consensus       487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  563 (1102)
                      +.....+..+...+....|  ++||+.|+..+.+   ..|.+||+.+++... +......+....|+             
T Consensus       316 g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wS-------------  379 (428)
T PRK01029        316 GQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWA-------------  379 (428)
T ss_pred             ccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEEC-------------
Confidence            3334555555556666677  4566777766543   468899988765432 22212223344444             


Q ss_pred             ceeEEEEcCCCCEEEEEe---CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC
Q 001311          564 SLGVVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  618 (1102)
Q Consensus       564 ~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~  618 (1102)
                              |+|+.|+...   ....|++||+.+++........+   .+...+|+|-.
T Consensus       380 --------pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~~  426 (428)
T PRK01029        380 --------IDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAFP  426 (428)
T ss_pred             --------CCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCCC
Confidence                    4445555432   24679999998877655443222   35567888743

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.23  E-value=1.5e-09  Score=124.27  Aligned_cols=223  Identities=11%  Similarity=0.042  Sum_probs=131.5

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      .....+...+.+.+|||||++|+.+...++  .|.+||+.+++....                    ....+.....+||
T Consensus       211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~~~wS  270 (448)
T PRK04792        211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGAPRFS  270 (448)
T ss_pred             eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCCeeEC
Confidence            345557778899999999998665554444  588999988765331                    1112234568999


Q ss_pred             cCCCeEEE-EECCCe--EEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC--cEEEEeCCCCeeeEE
Q 001311          418 PDGSLFGV-AYSRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--TIKVWDATNGAKQYI  492 (1102)
Q Consensus       418 pdg~~las-~~~d~~--v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~i~vWd~~~~~~~~~  492 (1102)
                      |||+.|+. .+.++.  |.+||+.+++..+    +..+...+...+|+|||+. ++++...++  .|.++|+.+++... 
T Consensus       271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~----lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-  344 (448)
T PRK04792        271 PDGKKLALVLSKDGQPEIYVVDIATKALTR----ITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-  344 (448)
T ss_pred             CCCCEEEEEEeCCCCeEEEEEECCCCCeEE----CccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-
Confidence            99998876 455664  7778888876432    4455566778999999996 334443344  47777887776543 


Q ss_pred             eecCCCCeEEEeeeecCCccEEEEEeC-CCe--EEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          493 FEGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                      +..+.......+|  +++|++|+..+. ++.  |.++|+.++... .+... ......                     .
T Consensus       345 Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~p---------------------s  399 (448)
T PRK04792        345 LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESP---------------------S  399 (448)
T ss_pred             EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCc---------------------e
Confidence            2212222233455  456667766554 443  444566554321 11111 011112                     3


Q ss_pred             EcCCCCEEEEEe-CCC--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311          570 FDTTKNRFLAAG-DDF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  616 (1102)
Q Consensus       570 ~~~~~~~l~~~~-~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  616 (1102)
                      |+|+|+.|+..+ .++  .+++++. +|.....+.....  .+...+|+|
T Consensus       400 ~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g--~~~~p~Wsp  446 (448)
T PRK04792        400 VAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG--EVKSPAWSP  446 (448)
T ss_pred             ECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--CcCCCccCC
Confidence            555556665544 333  4777787 4555565654322  456677876

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.22  E-value=4.6e-09  Score=121.29  Aligned_cols=191  Identities=14%  Similarity=0.108  Sum_probs=124.3

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECC---CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC--c
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  478 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~  478 (1102)
                      +..+...+...+|||||++||.+..+   ..|++||+.+++...    +..+.+.+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            44566679999999999999987654   479999999886432    3445667778999999985 344554444  5


Q ss_pred             EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CC--eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce
Q 001311          479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  555 (1102)
Q Consensus       479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  555 (1102)
                      |++||+.++... .+..+........|+  ++|+.|+..+. ++  .|.++|+.+++. ..+.....             
T Consensus       260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~-------------  322 (417)
T TIGR02800       260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGG-------------  322 (417)
T ss_pred             EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCC-------------
Confidence            899998877643 344454444455664  56677766554 33  566677654332 12221222             


Q ss_pred             eeeccccCceeEEEEcCCCCEEEEEeCCC---eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001311          556 TYQGFRKRSLGVVQFDTTKNRFLAAGDDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  628 (1102)
Q Consensus       556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  628 (1102)
                              ......|+|++++++.++.++   .|.+||+.++.. ..+....   ......|+|||++|+..+.++
T Consensus       323 --------~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~---~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       323 --------YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLTDTG---LDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             --------CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEccCCC---CCCCceECCCCCEEEEEEeCC
Confidence                    223445666667777777665   799999987654 3333222   234578999999988877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.21  E-value=2.4e-09  Score=115.74  Aligned_cols=173  Identities=18%  Similarity=0.304  Sum_probs=138.6

Q ss_pred             cCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE-------------------
Q 001311          356 PVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-------------------  416 (1102)
Q Consensus       356 pdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-------------------  416 (1102)
                      |-+. ++|....||.++|||..+++....+.                -...-.+..++..|                   
T Consensus         3 ~~~~-~~A~~~~~g~l~iw~t~~~~~~~e~~----------------p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~   65 (541)
T KOG4547|consen    3 PALD-YFALSTGDGRLRIWDTAKNQLQQEFA----------------PIASLSGTCTYTKWGLSADYSPMKWLSLEKAKK   65 (541)
T ss_pred             chhh-eEeecCCCCeEEEEEccCceeeeeec----------------cchhccCcceeEEEEEEeccchHHHHhHHHHhh
Confidence            3345 48999999999999999887765311                01112233444444                   


Q ss_pred             -ccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec
Q 001311          417 -SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  495 (1102)
Q Consensus       417 -spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~  495 (1102)
                       +.|-..||-|...|.|.+|++..|+.... .+-..|.+.|.++.++.+-.  .|.|++.|+.+.+|+..++..++.+.+
T Consensus        66 ~s~~t~~lvlgt~~g~v~~ys~~~g~it~~-~st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~  142 (541)
T KOG4547|consen   66 ASLDTSMLVLGTPQGSVLLYSVAGGEITAK-LSTDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKE  142 (541)
T ss_pred             ccCCceEEEeecCCccEEEEEecCCeEEEE-EecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeecc
Confidence             22445677788899999999999985543 23457999999999998888  799999999999999999999999999


Q ss_pred             CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccC
Q 001311          496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  552 (1102)
Q Consensus       496 h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~  552 (1102)
                      ....+.++|.  .+||..+++++  +.|++||+.+.+....|.+|.+.|.++.|..+
T Consensus       143 ~~~~~~sl~i--s~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~  195 (541)
T KOG4547|consen  143 QKPLVSSLCI--SPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL  195 (541)
T ss_pred             CCCccceEEE--cCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence            9999999996  45678898887  79999999999999999999999999998665

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1.3e-08  Score=108.35  Aligned_cols=295  Identities=12%  Similarity=0.152  Sum_probs=183.5

Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      ..|.-+.|||+.++|++-+..-.+.-|+-           .....+.+||+.+|.+.............-.-+.||.|++
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d-----------~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdK  318 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDD-----------NEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDK  318 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCccc-----------CCCceEEEEEccccchhcceeccCCCccccceEEeccCCc
Confidence            34677888888888887765422222210           0011245666677776554332111222233468999999


Q ss_pred             eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC-----CcEEEEEeecceeeeeeccccccce
Q 001311          820 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDEVKSKLKGHSKRIT  894 (1102)
Q Consensus       820 ~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~~~~~l~~h~~~V~  894 (1102)
                      |+|--...+|.||+..+..++-.-.-....|....|+| .+++||.=...     ..+.+-.+.+++.+++-.-|.-.=.
T Consensus       319 y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDc  397 (698)
T KOG2314|consen  319 YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDC  397 (698)
T ss_pred             eeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeeccceeeecc
Confidence            99988878999999877554433233356788999999 88888865432     3677777777777766655544444


Q ss_pred             eEEEecCCCEEEEEcC----------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--Ee--C
Q 001311          895 GLAFSHALNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VH--E  960 (1102)
Q Consensus       895 ~l~~s~d~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~--d  960 (1102)
                      .|-|-.+|.+|+.--.          =..+.|+.+..... ....+.+.       ..|...+|-|.|..+++  +.  .
T Consensus       398 kLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~velk-------e~vi~FaWEP~gdkF~vi~g~~~k  469 (698)
T KOG2314|consen  398 KLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVELK-------ESVIAFAWEPHGDKFAVISGNTVK  469 (698)
T ss_pred             EEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeeecc-------hheeeeeeccCCCeEEEEEccccc
Confidence            5777788888875321          12245555544221 11112111       36788999999999888  32  3


Q ss_pred             CeEEEEEcCC-ce---EeeeeccCCCCCCeeEEEEcCCCcEEEEEe---CCCeEEEEEcCCceeEEEeCCCcccCCCCCC
Q 001311          961 TQLAIFETTK-LE---CVKQWVPRESSAPITHATFSCDSQLVYACF---LDATVCVFSAANLKLRCRINPSAYLPAGVSS 1033 (1102)
Q Consensus       961 ~~i~iwd~~~-~~---~~~~~~~~~h~~~v~~l~~spd~~~l~s~s---~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~ 1033 (1102)
                      .++.+|.+++ ..   .+..+.    ....+.+.|+|.|++++.+.   ..|.+..+|.+...+...-.     +.+   
T Consensus       470 ~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~-----~eh---  537 (698)
T KOG2314|consen  470 NTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTAS-----PEH---  537 (698)
T ss_pred             cceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccC-----ccc---
Confidence            4788898873 22   222222    45678899999999988665   46889999988533322211     111   


Q ss_pred             CcccceEEEecCCCCCEEEEEec------CCcEEEEeccCCC
Q 001311         1034 SNVHPLVIAAHPQEPNEFALGLS------DGGVHVFEPLESE 1069 (1102)
Q Consensus      1034 ~~v~~~~v~f~p~d~~~l~s~~~------Dg~v~vW~~~~~~ 1069 (1102)
                        -....+.|.|. |++++|+++      |..-++|++....
T Consensus       538 --~~at~veWDPt-GRYvvT~ss~wrhk~d~GYri~tfqGrl  576 (698)
T KOG2314|consen  538 --FAATEVEWDPT-GRYVVTSSSSWRHKVDNGYRIFTFQGRL  576 (698)
T ss_pred             --cccccceECCC-CCEEEEeeehhhhccccceEEEEeecHH
Confidence              11226889994 899999886      4566788875543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1.2e-08  Score=108.65  Aligned_cols=321  Identities=11%  Similarity=0.158  Sum_probs=202.7

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC-----------CcEEEE
Q 001311          565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-----------NGIKIL  633 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iw  633 (1102)
                      -+.+.|+|.|.+|++--..| |.+|--.+...++.+. |.   .|.-+.|||..++|++-+..           ..+.||
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~-Hp---~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY-HP---GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc-CC---CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence            34567777777888876655 8899777766677765 22   47889999999999987532           457778


Q ss_pred             EccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001311          634 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  713 (1102)
Q Consensus       634 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  713 (1102)
                      |+.+| ...+.+...                  .                                            +.
T Consensus       288 DI~tG-~lkrsF~~~------------------~--------------------------------------------~~  304 (698)
T KOG2314|consen  288 DIATG-LLKRSFPVI------------------K--------------------------------------------SP  304 (698)
T ss_pred             Ecccc-chhcceecc------------------C--------------------------------------------CC
Confidence            87777 443333210                  0                                            00


Q ss_pred             cceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCc
Q 001311          714 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  793 (1102)
Q Consensus       714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~  793 (1102)
                      .                         ..-.-+.||.|+++++.-..| .|.||+...-              .+.|.   
T Consensus       305 ~-------------------------~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf--------------~lld~---  341 (698)
T KOG2314|consen  305 Y-------------------------LKWPIFRWSHDDKYFARMTGN-SISIYETPSF--------------MLLDK---  341 (698)
T ss_pred             c-------------------------cccceEEeccCCceeEEeccc-eEEEEecCce--------------eeecc---
Confidence            0                         111235788999988777664 6777764210              11111   


Q ss_pred             cccccccCCCCCCCCeeEEEEecCCCeEEEEe---C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311          794 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS---G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM  867 (1102)
Q Consensus       794 ~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s---d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~  867 (1102)
                      +.+        .-..|....|+|.+..||.-.   +   ..+.+..+.+++.+++...+.-.=..+-|-. .|.+|+.--
T Consensus       342 Ksl--------ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gdyLcvkv  412 (698)
T KOG2314|consen  342 KSL--------KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGDYLCVKV  412 (698)
T ss_pred             ccc--------CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCcEEEEEE
Confidence            100        235588899999999999765   2   3588888888888887766654445566766 677776432


Q ss_pred             ----------CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCC---CcEEEEEcCCCcccceeeeecCC
Q 001311          868 ----------DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---SQLCVWSSDGWEKQKNRFLQIPT  934 (1102)
Q Consensus       868 ----------~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~~~  934 (1102)
                                .=..+.|+.++....--..-.-...|...+|-|.|..+++.+..   .++.+|.+++... ....+..+.
T Consensus       413 dR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~-~~~lVk~~d  491 (698)
T KOG2314|consen  413 DRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIK-KPSLVKELD  491 (698)
T ss_pred             EeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCC-chhhhhhhc
Confidence                      11134455554432211112245678899999999888765543   5789998885221 222233332


Q ss_pred             CCCCCCCCCcEEEEccCCcEEEEE----eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC------
Q 001311          935 GRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ 1004 (1102)
Q Consensus       935 ~~~~~~~~v~~~~~spdg~~l~~~----~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D------ 1004 (1102)
                      .     .....+.|+|.|++++++    ..|.+..+|..-..+..+-.+ . -...+.+.|.|.|+|+++++.-      
T Consensus       492 k-----~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~-e-h~~at~veWDPtGRYvvT~ss~wrhk~d  564 (698)
T KOG2314|consen  492 K-----KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASP-E-HFAATEVEWDPTGRYVVTSSSSWRHKVD  564 (698)
T ss_pred             c-----cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCc-c-ccccccceECCCCCEEEEeeehhhhccc
Confidence            2     245789999999999883    468899999885333322111 2 3356788999999999998853      


Q ss_pred             CeEEEEEcC
Q 001311         1005 ATVCVFSAA 1013 (1102)
Q Consensus      1005 g~I~vwd~~ 1013 (1102)
                      .--+||++.
T Consensus       565 ~GYri~tfq  573 (698)
T KOG2314|consen  565 NGYRIFTFQ  573 (698)
T ss_pred             cceEEEEee
Confidence            335555554

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.18  E-value=3.8e-09  Score=114.17  Aligned_cols=188  Identities=16%  Similarity=0.302  Sum_probs=148.8

Q ss_pred             cCCCeEEEEe-CCeEEEEEcCCCceeeeecCC---CCCeeEEEEe------c-------------CCCcEEEEEeCCCcE
Q 001311          816 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPP---PPAATFLAFH------P-------------QDNNIIAIGMDDSSI  872 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~---~~~i~~l~~s------p-------------~d~~~lasg~~dg~v  872 (1102)
                      |...++|... ||.+++|+...++....+...   .+..++.+|.      |             .|-..++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456788777 999999999998887776532   3344444442      1             134488899999999


Q ss_pred             EEEEeecceeeeeec--cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311          873 QIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       873 ~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      .+|++..++....+.  .|.+.|.++.++.+-..|.|++.|+.+..|+......     +....+..+   .+.+++.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~-----~~~~~~~~~---~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI-----IRIWKEQKP---LVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccccee-----eeeeccCCC---ccceEEEcC
Confidence            999999999888885  5999999999999999999999999999999987543     333433332   688999999


Q ss_pred             CCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC-----CcEEE-EEeCCCeEEEEEcCC
Q 001311          951 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD-----SQLVY-ACFLDATVCVFSAAN 1014 (1102)
Q Consensus       951 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd-----~~~l~-s~s~Dg~I~vwd~~~ 1014 (1102)
                      ||+.++++ .++|.+||+++++.+..|.  ||.++|.++.|.-+     |.++. +...+..|.+|-++.
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~ft--gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVITFT--GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEEec--CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99988875 4689999999999999998  99999999999887     66655 444566688887654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=1.9e-08  Score=116.21  Aligned_cols=199  Identities=13%  Similarity=0.100  Sum_probs=123.6

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECC---CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC--c
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK--T  478 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~--~  478 (1102)
                      +..+...+...+|||||++|+..+.+   ..|.+||+.+++...    +....+.+...+|+|||+. ++++.+.++  .
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~  268 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE  268 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence            44567789999999999999887644   369999999886432    3333445667899999995 333554454  6


Q ss_pred             EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CC--eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce
Q 001311          479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DG--KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  555 (1102)
Q Consensus       479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  555 (1102)
                      |++||+.+++.. .+..+........|  +++|+.|+..+. +|  .|.++++.+++.. .+.....             
T Consensus       269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~--spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~-------------  331 (430)
T PRK00178        269 IYVMDLASRQLS-RVTNHPAIDTEPFW--GKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGN-------------  331 (430)
T ss_pred             EEEEECCCCCeE-EcccCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCC-------------
Confidence            888899887654 45545555555666  455566655543 33  4666666554321 1111111             


Q ss_pred             eeeccccCceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC-C--c
Q 001311          556 TYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-N--G  629 (1102)
Q Consensus       556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~  629 (1102)
                              ......|+|+++.++..+. ++  .|.+||+.+++.. .+... .  ......|+|||++++..+.+ |  .
T Consensus       332 --------~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~-~--~~~~p~~spdg~~i~~~~~~~g~~~  399 (430)
T PRK00178        332 --------YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDT-S--LDESPSVAPNGTMLIYATRQQGRGV  399 (430)
T ss_pred             --------CccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCC-C--CCCCceECCCCCEEEEEEecCCceE
Confidence                    1123456666677766553 22  5889999887653 33321 1  12356899999999877654 3  3


Q ss_pred             EEEEEcc
Q 001311          630 IKILATS  636 (1102)
Q Consensus       630 i~iwd~~  636 (1102)
                      |.+++..
T Consensus       400 l~~~~~~  406 (430)
T PRK00178        400 LMLVSIN  406 (430)
T ss_pred             EEEEECC
Confidence            5555553

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=2e-08  Score=115.10  Aligned_cols=210  Identities=10%  Similarity=0.078  Sum_probs=132.2

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC-CC--cEEEEEeecceeeeeeccccccceeEEEecCCCE
Q 001311          828 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV  904 (1102)
Q Consensus       828 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~  904 (1102)
                      .|.++|...... +.+..+...+....|+| ||+.|+..+. ++  .|++||+.+++.. .+....+.....+|+|||+.
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCE
Confidence            577778755433 44555667788999999 8888877653 33  6889998877642 22222333457899999998


Q ss_pred             EEE-EcCCCc--EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe--C--CeEEEEEcCCceEeeee
Q 001311          905 LVS-SGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--E--TQLAIFETTKLECVKQW  977 (1102)
Q Consensus       905 l~s-~s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--d--~~i~iwd~~~~~~~~~~  977 (1102)
                      |+. .+.++.  |.+||+.+++..     .... +.   ......+|+|||++|+...  +  ..|+++|+.+++.....
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~-----~lt~-~~---~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt  346 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALT-----RITR-HR---AIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT  346 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeE-----ECcc-CC---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe
Confidence            875 455665  777788775431     1111 11   2456789999999988743  2  35777788877754432


Q ss_pred             ccCCCCCCeeEEEEcCCCcEEEEEeCC-C--eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE
Q 001311          978 VPRESSAPITHATFSCDSQLVYACFLD-A--TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1054 (1102)
Q Consensus       978 ~~~~h~~~v~~l~~spd~~~l~s~s~D-g--~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~ 1054 (1102)
                      . .  .......+|+|||++|+..+.+ +  .|.++|+.+++... +.      .+  .. ..  ...|+| |++.|+..
T Consensus       347 ~-~--g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt------~~--~~-d~--~ps~sp-dG~~I~~~  410 (448)
T PRK04792        347 F-E--GEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT------ST--RL-DE--SPSVAP-NGTMVIYS  410 (448)
T ss_pred             c-C--CCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc------CC--CC-CC--CceECC-CCCEEEEE
Confidence            1 1  2233457999999998876653 3  46667888886532 22      11  01 11  347899 56665554


Q ss_pred             e-cCCc--EEEEec
Q 001311         1055 L-SDGG--VHVFEP 1065 (1102)
Q Consensus      1055 ~-~Dg~--v~vW~~ 1065 (1102)
                      + .+|.  +++++.
T Consensus       411 ~~~~g~~~l~~~~~  424 (448)
T PRK04792        411 TTYQGKQVLAAVSI  424 (448)
T ss_pred             EecCCceEEEEEEC
Confidence            4 4444  556665

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.13  E-value=4.1e-08  Score=111.33  Aligned_cols=304  Identities=12%  Similarity=0.069  Sum_probs=179.3

Q ss_pred             EEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEE
Q 001311          469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  548 (1102)
Q Consensus       469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  548 (1102)
                      .++.++.++.|..+|..+|+.+..+.-.........    .++..++.++.++.+..+|..+++..............  
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~----v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~--  140 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG----ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSP--  140 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE----EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecC--
Confidence            477888889999999999999877654332222222    22357888889999999999888776654432211000  


Q ss_pred             EccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCC---cCeEEEcCCCCEEEEEE
Q 001311          549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDGCLLAVST  625 (1102)
Q Consensus       549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~  625 (1102)
                                         ..+  .+..++.++.++.|+.||.++|+.+..+........   ..+..+  .+..++++.
T Consensus       141 -------------------p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~  197 (377)
T TIGR03300       141 -------------------PLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGF  197 (377)
T ss_pred             -------------------CEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEEC
Confidence                               001  124577778899999999999998887764322100   011122  224677888


Q ss_pred             CCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcc
Q 001311          626 NDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR  705 (1102)
Q Consensus       626 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  705 (1102)
                      .+|.+..+|..++..... ......               .+                                      
T Consensus       198 ~~g~v~ald~~tG~~~W~-~~~~~~---------------~g--------------------------------------  223 (377)
T TIGR03300       198 AGGKLVALDLQTGQPLWE-QRVALP---------------KG--------------------------------------  223 (377)
T ss_pred             CCCEEEEEEccCCCEeee-eccccC---------------CC--------------------------------------
Confidence            889999999888832211 100000               00                                      


Q ss_pred             ccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccc
Q 001311          706 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAP  785 (1102)
Q Consensus       706 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~  785 (1102)
                         .. ...++.+..                  ...    .+  .+..+++++.+|.+..||..+++             
T Consensus       224 ---~~-~~~~~~~~~------------------~~p----~~--~~~~vy~~~~~g~l~a~d~~tG~-------------  262 (377)
T TIGR03300       224 ---RT-ELERLVDVD------------------GDP----VV--DGGQVYAVSYQGRVAALDLRSGR-------------  262 (377)
T ss_pred             ---CC-chhhhhccC------------------Ccc----EE--ECCEEEEEEcCCEEEEEECCCCc-------------
Confidence               00 000000000                  000    11  13356677778888888763321             


Q ss_pred             eeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEE
Q 001311          786 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNII  863 (1102)
Q Consensus       786 ~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~l  863 (1102)
                      .+|....+              .....+  .++..+++++ +|.|..+|..+++.+........ .......   .+..|
T Consensus       263 ~~W~~~~~--------------~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l  323 (377)
T TIGR03300       263 VLWKRDAS--------------SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYL  323 (377)
T ss_pred             EEEeeccC--------------CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEE
Confidence            23433210              011122  2345565555 89999999999987765532222 2222233   24578


Q ss_pred             EEEeCCCcEEEEEeecceeeeeecccccccee-EEEecCCCEEEEEcCCCcEEEE
Q 001311          864 AIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVW  917 (1102)
Q Consensus       864 asg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vw  917 (1102)
                      ++++.+|.|+++|..+++.+.++..+...+.. .++. + ..|+.++.||.|..|
T Consensus       324 ~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       324 VVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             EEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            88999999999999999999888766654433 3333 3 358888899988765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.11  E-value=9.2e-08  Score=108.47  Aligned_cols=230  Identities=16%  Similarity=0.110  Sum_probs=137.4

Q ss_pred             CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEc
Q 001311          358 QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSY  437 (1102)
Q Consensus       358 g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~  437 (1102)
                      +.+ +++++.++.|.-+|..+|+.+-...+.                .....   ..+  .++..+++++.++.+..+|.
T Consensus        65 ~~~-v~v~~~~g~v~a~d~~tG~~~W~~~~~----------------~~~~~---~p~--v~~~~v~v~~~~g~l~ald~  122 (377)
T TIGR03300        65 GGK-VYAADADGTVVALDAETGKRLWRVDLD----------------ERLSG---GVG--ADGGLVFVGTEKGEVIALDA  122 (377)
T ss_pred             CCE-EEEECCCCeEEEEEccCCcEeeeecCC----------------CCccc---ceE--EcCCEEEEEcCCCEEEEEEC
Confidence            443 778888899999999999887542221                00111   111  25788888999999999999


Q ss_pred             cCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE-----EEeeeecCCcc
Q 001311          438 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY-----SVCPHHKENIQ  512 (1102)
Q Consensus       438 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~-----~v~~~~~~~~~  512 (1102)
                      ++|+.+.... +   .+.+.+.-... +.  .++.++.++.|..||.++|+.+..+......+.     +...  . + .
T Consensus       123 ~tG~~~W~~~-~---~~~~~~~p~v~-~~--~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~-~-~  191 (377)
T TIGR03300       123 EDGKELWRAK-L---SSEVLSPPLVA-NG--LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--A-D-G  191 (377)
T ss_pred             CCCcEeeeec-c---CceeecCCEEE-CC--EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--E-C-C
Confidence            9998764321 1   12222211112 33  366677899999999999999887754332211     1111  1 2 3


Q ss_pred             EEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001311          513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD  592 (1102)
Q Consensus       513 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  592 (1102)
                      .++.+..++.+..+|..+++.........         +.+...... .........+  .+..++.++.+|.++.||..
T Consensus       192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~---------~~g~~~~~~-~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~  259 (377)
T TIGR03300       192 GVLVGFAGGKLVALDLQTGQPLWEQRVAL---------PKGRTELER-LVDVDGDPVV--DGGQVYAVSYQGRVAALDLR  259 (377)
T ss_pred             EEEEECCCCEEEEEEccCCCEeeeecccc---------CCCCCchhh-hhccCCccEE--ECCEEEEEEcCCEEEEEECC
Confidence            67888888999999998876654332110         000000000 0000000011  13467888889999999999


Q ss_pred             CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          593 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       593 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +|+.+.......    .....  .++..+++++.+|.+..+|..++
T Consensus       260 tG~~~W~~~~~~----~~~p~--~~~~~vyv~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       260 SGRVLWKRDASS----YQGPA--VDDNRLYVTDADGVVVALDRRSG  299 (377)
T ss_pred             CCcEEEeeccCC----ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence            998777665211    11122  24567777778888888887666

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.10  E-value=9.7e-09  Score=101.04  Aligned_cols=199  Identities=13%  Similarity=0.122  Sum_probs=136.2

Q ss_pred             eeEEEEecCCCeEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee-cceeee
Q 001311          809 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS  884 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~  884 (1102)
                      ..++.|++-+..++++. +|.+.+-+.......  +..++|.-++..+.|+..+.+++.+|++|+.+..||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45677888888888776 788886665544443  47889999999999998788999999999999999998 344444


Q ss_pred             e-eccccccceeEEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC--CcEEEEEeC
Q 001311          885 K-LKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHE  960 (1102)
Q Consensus       885 ~-l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~d  960 (1102)
                      . -+-|...|.+|.-+| .+.+++||+.|-.|++||...-.+    ++  ..+  ...+.|..+..+|.  ++.|+++.-
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k----Pl--~~~--~v~GGVWRi~~~p~~~~~lL~~CMh  275 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK----PL--FKA--KVGGGVWRIKHHPEIFHRLLAACMH  275 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC----cc--ccC--ccccceEEEEecchhhhHHHHHHHh
Confidence            3 466888899998885 578999999999999999885221    11  111  11257889999885  344555555


Q ss_pred             CeEEEEEcCCceEe---eeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEE-EEEcCCc
Q 001311          961 TQLAIFETTKLECV---KQWVPRESSAPITHATFSCDSQLVYACF-LDATVC-VFSAANL 1015 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~---~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~-vwd~~~~ 1015 (1102)
                      +..+|.+...+...   .......|.+-...-.|.....+|||++ .|+.++ +|-..++
T Consensus       276 ~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  276 NGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             cCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            55666666543322   1112235555555556644445788865 466644 6655444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=4.5e-08  Score=111.25  Aligned_cols=204  Identities=13%  Similarity=0.082  Sum_probs=118.5

Q ss_pred             cCCCCCCeEEEEEccCCCeEE---EEECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC---
Q 001311          404 VKDPGVSVNRVIWSPDGSLFG---VAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD---  475 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~la---s~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~---  475 (1102)
                      +......+..-+|||||+.++   +...++  .|.+.++.+++..+    +....+.....+|+|||+.+ +++...   
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~  254 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN  254 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence            334455677889999998633   333343  57788998886433    33344556678999999963 333322   


Q ss_pred             -CCcEEEEeCCCC---eeeEEeecCCCCeEEEeeeecCCccEEEEEe-CCCeEEEEEc--CCC-CCeeeecCCCCeeeEE
Q 001311          476 -DKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLY--DNL-GSRVDYEAPGRWCTTM  547 (1102)
Q Consensus       476 -d~~i~vWd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~--~~~-~~~~~~~~~~~~v~~~  547 (1102)
                       |..+.+|++..+   +......++.+.....+|  ++||+.|+..+ .+|...+|.+  ... .....+.....     
T Consensus       255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-----  327 (428)
T PRK01029        255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-----  327 (428)
T ss_pred             cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-----
Confidence             334455777653   333333333333445566  56667666555 4665555643  221 11222222222     


Q ss_pred             EEccCCceeeeccccCceeEEEEcCCCCEEEEEeC---CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311          548 AYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD---DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS  624 (1102)
Q Consensus       548 ~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  624 (1102)
                                      .+....|+|+|+.|+..+.   ...|++||+.+++....... .  ..+....|+|||+.|+..
T Consensus       328 ----------------~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~--~~~~~p~wSpDG~~L~f~  388 (428)
T PRK01029        328 ----------------NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-P--ENKESPSWAIDSLHLVYS  388 (428)
T ss_pred             ----------------CccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-C--CCccceEECCCCCEEEEE
Confidence                            2234455666666665543   24799999988876543322 1  245679999999988865


Q ss_pred             EC---CCcEEEEEccCC
Q 001311          625 TN---DNGIKILATSDG  638 (1102)
Q Consensus       625 ~~---dg~i~iwd~~~~  638 (1102)
                      ..   ...|.+|++.++
T Consensus       389 ~~~~g~~~L~~vdl~~g  405 (428)
T PRK01029        389 AGNSNESELYLISLITK  405 (428)
T ss_pred             ECCCCCceEEEEECCCC
Confidence            43   346778887766

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.08  E-value=1.7e-10  Score=128.29  Aligned_cols=217  Identities=17%  Similarity=0.173  Sum_probs=146.8

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      ...|+..-+|++||-+.++ |+.|+..|.|+++++.+|....                   ....|..+|+.+.=|.||.
T Consensus      1097 frd~~~~fTc~afs~~~~h-L~vG~~~Geik~~nv~sG~~e~-------------------s~ncH~SavT~vePs~dgs 1156 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNH-LAVGSHAGEIKIFNVSSGSMEE-------------------SVNCHQSAVTLVEPSVDGS 1156 (1516)
T ss_pred             hhccccceeeEEeecCCce-EEeeeccceEEEEEccCccccc-------------------cccccccccccccccCCcc
Confidence            3458889999999999997 9999999999999999997765                   3779999999999999999


Q ss_pred             eEEEEECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecC--
Q 001311          422 LFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH--  496 (1102)
Q Consensus       422 ~las~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h--  496 (1102)
                      .+.+.+.-.  ...+|+..+-  ....+++.    .-.++.|+....+ .++.+. ...+.+||++++..+.++ .+.  
T Consensus      1157 ~~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~gt~-~d~a~~YDvqT~~~l~tylt~~~~ 1228 (1516)
T KOG1832|consen 1157 TQLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RALGTE-ADDALLYDVQTCSPLQTYLTDTVT 1228 (1516)
T ss_pred             eeeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHhccc-ccceEEEecccCcHHHHhcCcchh
Confidence            988765433  5789998762  22222332    3467889877553 333333 346789999999887763 221  


Q ss_pred             -CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311          497 -EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  575 (1102)
Q Consensus       497 -~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  575 (1102)
                       ...-++..|++  ...+++   .||.  +||++..+.+..+..-..                      ...-.|+|.|+
T Consensus      1229 ~~y~~n~a~FsP--~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~----------------------~~~G~FHP~g~ 1279 (1516)
T KOG1832|consen 1229 SSYSNNLAHFSP--CDTLIL---NDGV--LWDVRIPEAIHRFDQFTD----------------------YGGGGFHPSGN 1279 (1516)
T ss_pred             hhhhccccccCC--CcceEe---eCce--eeeeccHHHHhhhhhhee----------------------cccccccCCCc
Confidence             11123444544  334444   3454  599987766554432110                      01123677777


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311          576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS  624 (1102)
Q Consensus       576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  624 (1102)
                      .++.-+     .|||+++.+.++....-..    ..+.|+..|..++..
T Consensus      1280 eVIINS-----EIwD~RTF~lLh~VP~Ldq----c~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1280 EVIINS-----EIWDMRTFKLLHSVPSLDQ----CAVTFNSTGDVMYAM 1319 (1516)
T ss_pred             eEEeec-----hhhhhHHHHHHhcCccccc----eEEEeccCccchhhh
Confidence            787755     4899999988877654332    457888877766543

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.05  E-value=1.1e-07  Score=118.97  Aligned_cols=256  Identities=9%  Similarity=0.077  Sum_probs=162.3

Q ss_pred             eEEEEecCCC-eEEEEe-CCeEEEEEcCCCceeeeecC--------------CCCCeeEEEEecCCCcEEEEEe-CCCcE
Q 001311          810 PCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMP--------------PPPAATFLAFHPQDNNIIAIGM-DDSSI  872 (1102)
Q Consensus       810 ~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~~~~~~~--------------~~~~i~~l~~sp~d~~~lasg~-~dg~v  872 (1102)
                      ..+++++++. .+++-. ++.|++||... ..+..+.+              .-.....+++++ +++.|+++. .++.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            5688887644 444444 68899999764 44433322              112367899999 666555544 45789


Q ss_pred             EEEEeecceeeeeecc--c---------------cccceeEEEec-CCCEEEEEcCCCcEEEEEcCCCccccee---eee
Q 001311          873 QIYNVRVDEVKSKLKG--H---------------SKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNR---FLQ  931 (1102)
Q Consensus       873 ~vwd~~~~~~~~~l~~--h---------------~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~---~~~  931 (1102)
                      +++|+.++.. .++.+  .               -..-+.|+|+| ++.++++.+.++.|++||..++......   ...
T Consensus       649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            9999877543 33311  0               11235799999 5667777788899999998775431100   000


Q ss_pred             cCCCCC---CCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceEeeeec-----------cC--------CCCCCee
Q 001311          932 IPTGRT---PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWV-----------PR--------ESSAPIT  987 (1102)
Q Consensus       932 ~~~~~~---~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~~~~~~-----------~~--------~h~~~v~  987 (1102)
                      ...+..   ........++++|+|++|.++  .++.|++||+.++.......           ..        ..-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            000110   011245779999999866653  67899999998765321110           00        0112356


Q ss_pred             EEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCc-ccCCCC--CCCcccceEEEecCCCCCEEEEEecCCcEEEEe
Q 001311          988 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSA-YLPAGV--SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus       988 ~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~-~~~~gh--~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
                      .++++++|.++++-+.++.|++||..++.......... ....|.  ...--.|..+++++ +|+++++-+.++.|++||
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence            89999999998988899999999999887664332110 000110  01112466899998 688999999999999999


Q ss_pred             ccCCC
Q 001311         1065 PLESE 1069 (1102)
Q Consensus      1065 ~~~~~ 1069 (1102)
                      +.+++
T Consensus       887 ~~~~~  891 (1057)
T PLN02919        887 LNKGE  891 (1057)
T ss_pred             CCCCc
Confidence            98876

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.04  E-value=2.9e-08  Score=97.75  Aligned_cols=190  Identities=19%  Similarity=0.131  Sum_probs=129.8

Q ss_pred             CCCeeEEEEe---cCCCeEEEEEecCCeEEEEeCCCCeeEEe-eeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          346 GSSPMSMDFH---PVQQTLLLVGTNVGDIGLWEVGSRERLVL-RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       346 ~~~v~~v~~s---pdg~~llasg~~d~~i~iWd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      ++.+..+.|.   -+|...++-+-.+|.|.++...-.+.... +.+..              ..-....-.++.|++.|.
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~--------------~ki~~~~~lslD~~~~~~  134 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSS--------------KKISVVEALSLDISTSGT  134 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccch--------------hhhhheeeeEEEeeccCc
Confidence            4455666665   24554566677778888887643322221 11100              000011345788999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCeeeEE-eecCCCC
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYI-FEGHEAP  499 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~~~~~~~-~~~h~~~  499 (1102)
                      .++++..+|.+.+-+.... .+....++++|.-..+...|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus       135 ~i~vs~s~G~~~~v~~t~~-~le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  135 KIFVSDSRGSISGVYETEM-VLEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG  212 (339)
T ss_pred             eEEEEcCCCcEEEEeccee-eeeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence            9999999999985554433 23444468899999999999987776 89999999999999999 4555554 4568888


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccC
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  552 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~  552 (1102)
                      |.++.-++ +.+.+|++|+.|..|++||.++......-....+.|..+..+|.
T Consensus       213 V~SI~ss~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  213 VVSIYSSP-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPE  264 (339)
T ss_pred             eEEEecCC-CCCceEEEeccccceeeeehhcccCccccCccccceEEEEecch
Confidence            98886543 45679999999999999999976655433334455666655554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.01  E-value=2e-09  Score=128.99  Aligned_cols=197  Identities=18%  Similarity=0.333  Sum_probs=155.7

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  423 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  423 (1102)
                      .+-..|.++.=+|...+ .+||+.||.|++|.+..++.+..     |+            -.|. ..|+.+.|+.+|+..
T Consensus      2206 ~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred             cccCceeeecCCCCCce-EEecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCce
Confidence            35678899999999986 89999999999999988877653     11            2233 789999999999999


Q ss_pred             EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec---CCCcEEEEeCCCC---eeeEEeecCC
Q 001311          424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNG---AKQYIFEGHE  497 (1102)
Q Consensus       424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~vWd~~~~---~~~~~~~~h~  497 (1102)
                      ..+..||.+.+|....    +.....+.|....+...|-.  .  .+++++   .++.+.+||..-.   .++.  ..|.
T Consensus      2267 ~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~ 2336 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHD 2336 (2439)
T ss_pred             eeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceee--eecC
Confidence            9999999999999873    34445778999999999976  3  466664   5789999996532   2333  7799


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      +.++++++.|  ..++|++|+.+|.|++||++..+.+..+..                              ++ ...++
T Consensus      2337 ~gaT~l~~~P--~~qllisggr~G~v~l~D~rqrql~h~~~~------------------------------~~-~~~~f 2383 (2439)
T KOG1064|consen 2337 GGATVLAYAP--KHQLLISGGRKGEVCLFDIRQRQLRHTFQA------------------------------LD-TREYF 2383 (2439)
T ss_pred             CCceEEEEcC--cceEEEecCCcCcEEEeehHHHHHHHHhhh------------------------------hh-hhhee
Confidence            9999999754  448999999999999999998666554432                              11 22579


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEcC
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~~  602 (1102)
                      ++++..|.|+||++.....+..+..
T Consensus      2384 ~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2384 VTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred             eccCcccceEEEEccccchhhcCch
Confidence            9999999999999998877777653

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.00  E-value=1.5e-09  Score=114.60  Aligned_cols=210  Identities=15%  Similarity=0.188  Sum_probs=149.6

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCC-cee---eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG-DEV---RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  478 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~-~~~---~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~  478 (1102)
                      .+.||+..|..++--.+.+-+++++.|++|++|.++.. ..+   ....++..|..+|.++.|..+.+  +++++  |+.
T Consensus       730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g  805 (1034)
T KOG4190|consen  730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG  805 (1034)
T ss_pred             cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence            57899999999988888999999999999999998742 222   25567889999999999999988  56655  789


Q ss_pred             EEEEeCCCCeeeEEee-----cCCCCeEEEeeeecCCccEEEEE-eCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccC
Q 001311          479 IKVWDATNGAKQYIFE-----GHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD  552 (1102)
Q Consensus       479 i~vWd~~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~  552 (1102)
                      |.+||.--|+.+..+.     +..+.|.++   ++-+..+++.| +...+|+++|.+..+-...+.....        | 
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna--------~-  873 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNA--------P-  873 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccC--------C-
Confidence            9999988887765332     223334443   33344555555 6789999999887654433321110        0 


Q ss_pred             CceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311          553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       553 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  632 (1102)
                             ..+..+.++++.+.|++++++-..|.|.+.|.++|+.+.....-..  ....++ .|..+.|+....|.++.+
T Consensus       874 -------~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmec--dllqla-apsdq~L~~saldHslaV  943 (1034)
T KOG4190|consen  874 -------GPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMEC--DLLQLA-APSDQALAQSALDHSLAV  943 (1034)
T ss_pred             -------CCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccc--hhhhhc-CchhHHHHhhcccceeEe
Confidence                   1123566788888889999999999999999999998876653221  121122 356667777777888888


Q ss_pred             -EEccCC
Q 001311          633 -LATSDG  638 (1102)
Q Consensus       633 -wd~~~~  638 (1102)
                       |...++
T Consensus       944 nWhaldg  950 (1034)
T KOG4190|consen  944 NWHALDG  950 (1034)
T ss_pred             eehhcCC
Confidence             876665

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.96  E-value=5.7e-07  Score=112.83  Aligned_cols=275  Identities=15%  Similarity=0.201  Sum_probs=164.2

Q ss_pred             eeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccc-cccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311          349 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL-QAALVKDPGVSVNRVIWSPDGSLFGVAY  427 (1102)
Q Consensus       349 v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~V~~l~~spdg~~las~~  427 (1102)
                      ...+++++++..++++-+.++.|.+||.... .+....-      .+..-. ....-..+-.....+++++++..|.++.
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~------~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaD  642 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGS------TGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVAD  642 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEcc------CCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEe
Confidence            3478999875557888888899999998643 3321000      000000 0000111223468899999988776664


Q ss_pred             -CCCeEEEEEccCCceeeeEEE-------eecc-------ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311          428 -SRHIVQIYSYHGGDEVRQHLE-------IDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       428 -~d~~v~vwd~~~~~~~~~~~~-------l~~h-------~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~  492 (1102)
                       .++.|+++|..++.. ..+..       ..+.       -..-..++|+|++.. ++++.+.++.|++||..++... .
T Consensus       643 t~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~v~-~  719 (1057)
T PLN02919        643 TENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGVTR-V  719 (1057)
T ss_pred             CCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCeEE-E
Confidence             457899999887642 21110       0000       112367999995554 6777888899999998877543 2


Q ss_pred             eecC---------------CCCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCeeeecCCCCe-eeEEEEc-cCCc
Q 001311          493 FEGH---------------EAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRW-CTTMAYS-ADGT  554 (1102)
Q Consensus       493 ~~~h---------------~~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s-~~~~  554 (1102)
                      +.+.               ......++++  +++. ++++-+.++.|++||+.++.......+.... .....|. .+|.
T Consensus       720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavs--pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~  797 (1057)
T PLN02919        720 FSGDGYERNLNGSSGTSTSFAQPSGISLS--PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGV  797 (1057)
T ss_pred             EecCCccccCCCCccccccccCccEEEEe--CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCc
Confidence            2211               1123456664  4445 5566677899999999865432211100000 0000110 0110


Q ss_pred             eeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC------------CCCCcCeEEEcCCCCEEE
Q 001311          555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG------------GLPASPRIRFNKDGCLLA  622 (1102)
Q Consensus       555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~v~~~~~s~~~~~l~  622 (1102)
                      .  ....-.....++++++|+.+++-..++.|++||..++...... +.+            .......++++++|+.++
T Consensus       798 g--~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tia-G~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV  874 (1057)
T PLN02919        798 G--SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLA-GTGKAGFKDGKALKAQLSEPAGLALGENGRLFV  874 (1057)
T ss_pred             h--hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEe-ccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence            0  0000112346888999998888889999999999887655333 111            112456899999999988


Q ss_pred             EEECCCcEEEEEccCC
Q 001311          623 VSTNDNGIKILATSDG  638 (1102)
Q Consensus       623 ~~~~dg~i~iwd~~~~  638 (1102)
                      +-+.++.|++||+.++
T Consensus       875 aDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        875 ADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EECCCCEEEEEECCCC
Confidence            8889999999999887

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.93  E-value=9.6e-09  Score=112.72  Aligned_cols=304  Identities=13%  Similarity=0.150  Sum_probs=187.8

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCC--CCCeEEEEEccC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP--GVSVNRVIWSPD  419 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~spd  419 (1102)
                      .+.-.+.+.++.++|.|+- +|.++.-| +.|-|+...-....                   ...|  .-.|..+.|||.
T Consensus        20 sl~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p~~ppr-------------------~l~h~tpw~vad~qws~h   78 (1081)
T KOG0309|consen   20 SLKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDPFTPPR-------------------WLHHITPWQVADVQWSPH   78 (1081)
T ss_pred             EEEecCcccceeeccccch-hhhhhhcC-eEEEeccCCCCCce-------------------eeeccCcchhcceecccC
Confidence            3446788999999999997 77766644 34445543211100                   1111  224666778773


Q ss_pred             --CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEeecC
Q 001311          420 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFEGH  496 (1102)
Q Consensus       420 --g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~~h  496 (1102)
                        -.+-++......-.+|++.....-..-..+.||...|+.+.|.+.... ++++++.|..+..||+++.. .+..+..-
T Consensus        79 ~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w  157 (1081)
T KOG0309|consen   79 PAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSW  157 (1081)
T ss_pred             CCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeecc
Confidence              334444445566778998754443444468899999999999999887 89999999999999999864 45555544


Q ss_pred             CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe-eeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311          497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  575 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  575 (1102)
                      ...-..|.|+.. ++. +...+..+.|++||.+.+... ..+.++...+..+.|..--.                    .
T Consensus       158 ~s~asqVkwnyk-~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~--------------------s  215 (1081)
T KOG0309|consen  158 RSAASQVKWNYK-DPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY--------------------S  215 (1081)
T ss_pred             cccCceeeeccc-Ccc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh--------------------h
Confidence            445566788654 333 445556688999999987544 45566655566555533211                    3


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC--EEE---------EEECCCcEEEEEccCCccceee
Q 001311          576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC--LLA---------VSTNDNGIKILATSDGIRLLRT  644 (1102)
Q Consensus       576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~---------~~~~dg~i~iwd~~~~~~~~~~  644 (1102)
                      .+.+.+.|++|++||.............. ...|..-.+.|-|.  ++.         .-.-+.....|+..++.+.+..
T Consensus       216 ~~~s~~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~  294 (1081)
T KOG0309|consen  216 EIMSSSNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHT  294 (1081)
T ss_pred             hhcccCCCCceeeecccccccccceeccc-cCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceee
Confidence            47888999999999987654322221111 11344444555222  222         1222333445666667778888


Q ss_pred             cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311          645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  721 (1102)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~  721 (1102)
                      +.||.+.+..-      .+...+                         .-+.......-.|++-+.|.++|+|.+..
T Consensus       295 F~GH~D~V~eF------lWR~r~-------------------------e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  295 FVGHDDVVLEF------LWRKRK-------------------------ECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             ecCcchHHHHH------hhhhcc-------------------------cccCCCCccceeEEEeecCCceEeeeccH
Confidence            99998876522      111111                         11111222345688999999999999875

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.90  E-value=1.2e-08  Score=105.11  Aligned_cols=164  Identities=18%  Similarity=0.150  Sum_probs=110.8

Q ss_pred             eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE---E
Q 001311          350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV---A  426 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las---~  426 (1102)
                      ..+..+|+++ ++|++..++...+.++.....    ..+.++..         ...   ..-+++.|..+......   +
T Consensus        66 ~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~~---------~v~---~~~~ai~~~~~~~sv~v~dka  128 (390)
T KOG3914|consen   66 ALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDVS---------CVP---KRPTAISFIREDTSVLVADKA  128 (390)
T ss_pred             cccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeEe---------ecc---cCcceeeeeeccceEEEEeec
Confidence            4455566666 477777767766666644322    01111100         011   12234444444444444   4


Q ss_pred             ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCCeEEEee
Q 001311          427 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCP  505 (1102)
Q Consensus       427 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~v~~  505 (1102)
                      +....+.+|....+.+..    +-||-.-++.|+|+||++  .++++..|..|+|-....-..+..| -||+..|..++.
T Consensus       129 gD~~~~di~s~~~~~~~~----~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl  202 (390)
T KOG3914|consen  129 GDVYSFDILSADSGRCEP----ILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISL  202 (390)
T ss_pred             CCceeeeeecccccCcch----hhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeee
Confidence            555667777766554332    668999999999999999  7999999999999887766666555 579999999986


Q ss_pred             eecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC
Q 001311          506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA  539 (1102)
Q Consensus       506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  539 (1102)
                      .   ++..|+++|.|++|++||+.+++.+.++..
T Consensus       203 ~---~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl  233 (390)
T KOG3914|consen  203 T---DNYLLLSGSGDKTLRLWDITSGKLLDTCDL  233 (390)
T ss_pred             c---cCceeeecCCCCcEEEEecccCCcccccch
Confidence            3   336799999999999999999988765543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=7.3e-09  Score=109.55  Aligned_cols=240  Identities=14%  Similarity=0.187  Sum_probs=167.6

Q ss_pred             CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC-------CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM-------TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~-------~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                      +|...|+.++--.+.+.+++++ |.+|++|.++       +..+..++..|..+|..+.|-. +.++++++  ||-|.+|
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc--D~giHlW  809 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC--DGGIHLW  809 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--cCcceee
Confidence            4888898887777777788888 9999999986       3346778899999999999998 88888765  8899999


Q ss_pred             Eeecceeeeeecc--ccccceeEEEecC--CCEEE-EEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311          876 NVRVDEVKSKLKG--HSKRITGLAFSHA--LNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       876 d~~~~~~~~~l~~--h~~~V~~l~~s~d--~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      |.--++.+..+..  ..+.+..+..-++  ...++ -++...+|+++|...++-..........+.   ...+++++..+
T Consensus       810 DPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P---na~~R~iaVa~  886 (1034)
T KOG4190|consen  810 DPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP---NALTRAIAVAD  886 (1034)
T ss_pred             cccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCC---chheeEEEecc
Confidence            9887777664421  2233444443333  33343 347789999999988765443333222222   24678999999


Q ss_pred             CCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEE-EEcCCceeEEEeCCCcccC
Q 001311          951 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCV-FSAANLKLRCRINPSAYLP 1028 (1102)
Q Consensus       951 dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~v-wd~~~~~~~~~~~~~~~~~ 1028 (1102)
                      .|++++++ ++|.|.+.|.++|+.+..|.+-  .-....++ .|..+.|+....|.++.| |-.-.|....+.++.. .|
T Consensus       887 ~GN~lAa~LSnGci~~LDaR~G~vINswrpm--ecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kppp-ep  962 (1034)
T KOG4190|consen  887 KGNKLAAALSNGCIAILDARNGKVINSWRPM--ECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP-EP  962 (1034)
T ss_pred             CcchhhHHhcCCcEEEEecCCCceeccCCcc--cchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC-cc
Confidence            99999996 9999999999999999988732  11222333 456778888888999999 9988887776655221 11


Q ss_pred             CCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311         1029 AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1029 ~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                      .            .|...-|..|++.-..+.+.||.-
T Consensus       963 a------------hflqsvgpSLV~a~~Gn~lgVYad  987 (1034)
T KOG4190|consen  963 A------------HFLQSVGPSLVTAQNGNILGVYAD  987 (1034)
T ss_pred             h------------hhhhccCceeEEeccCcEEEEEec
Confidence            1            111112456666666666666654

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.88  E-value=1e-08  Score=123.23  Aligned_cols=200  Identities=15%  Similarity=0.227  Sum_probs=155.4

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      ++.|-..|.++.=+|...+-++|+.||.|++|.+..++.+....+. |. ..|+.+.|+.+|.  .+..+..||.+.+|.
T Consensus      2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred             eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence            4556678999999999999999999999999999999887655443 33 8999999999999  688888899999999


Q ss_pred             CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEe---CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311          484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  560 (1102)
Q Consensus       484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  560 (1102)
                      +. .+.....+.|......+.|-.    ..+++++   .++.+.+||.--....                    .++...
T Consensus      2280 ~~-pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~--------------------s~v~~~ 2334 (2439)
T KOG1064|consen 2280 AS-PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMN--------------------SLVHTC 2334 (2439)
T ss_pred             cC-CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCccc--------------------ceeeee
Confidence            65 777778888988888887754    3466654   4688999986542221                    112233


Q ss_pred             ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311          561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                      +.+..+++++-|....|++||.+|.|++||++..+.++.++.           +. ...++++|+..|.++||++..- .
T Consensus      2335 H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ikIw~~s~~-~ 2401 (2439)
T KOG1064|consen 2335 HDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNIKIWRLSEF-G 2401 (2439)
T ss_pred             cCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccceEEEEcccc-c
Confidence            444667777788888999999999999999998888777653           33 5678999999999999998766 4


Q ss_pred             ceeec
Q 001311          641 LLRTF  645 (1102)
Q Consensus       641 ~~~~~  645 (1102)
                      .+..+
T Consensus      2402 ll~~~ 2406 (2439)
T KOG1064|consen 2402 LLHTF 2406 (2439)
T ss_pred             hhhcC
Confidence            44444

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=98.84  E-value=1.6e-08  Score=97.85  Aligned_cols=156  Identities=18%  Similarity=0.208  Sum_probs=115.4

Q ss_pred             chhHHhHHHHHHHHhhhcCCCcc---------HHHHHHHHhcCCHHHHHHHhcccc--cccCccccchhhHHHHHhHhHH
Q 001311            3 KSSKKLFTSKHFLLEQESGFFFN---------MKYFEDEVHNGNWDDVEKYLSGFT--KVDDNRYSMKIFFEIRKQKYLE   71 (1102)
Q Consensus         3 ~~~~~g~~~s~~~l~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~~~~~i~~q~~~E   71 (1102)
                      -|-.+||.++|+.+.+|+|+...         ....|.+|..|+-++|+..+..+.  .++.+  +. +.|.+.+|+++|
T Consensus        36 ylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~~-l~F~Lq~q~lIE  112 (228)
T KOG2659|consen   36 YLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--RE-LFFHLQQLHLIE  112 (228)
T ss_pred             HHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--hh-HHHHHHHHHHHH
Confidence            36689999999999999999982         678999999999999999998872  33333  22 789999999999


Q ss_pred             HhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC--chhHHHHHHHHHHhhcccCccccccc
Q 001311           72 ALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD--TKSARSIMLVELKKLIEANPLFRDKL  149 (1102)
Q Consensus        72 ll~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~--~~~~R~~l~~~l~~~i~~~~~~~~~~  149 (1102)
                      |+..|..++|+.|+++++.|+...+++.++.|...+..--++ .........  ....|.++.+.++..|-...-   ..
T Consensus       113 liR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~-~~~~sp~~~l~~~s~R~kvA~~vN~aiL~~~~---~~  188 (228)
T KOG2659|consen  113 LIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFE-LSQESPSAELLSQSLRQKVASEVNSAILASQE---HE  188 (228)
T ss_pred             HHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcC-CcccCcHHHHHHHHHHHHHHHHHHHHHHHHhc---cc
Confidence            999999999999999999999887888888777666443332 122121222  245588888888887744222   11


Q ss_pred             CCCccchHHHHHHHHHHHHHH
Q 001311          150 QFPNLKNSRLRTLINQSLNWQ  170 (1102)
Q Consensus       150 ~~~~~p~~rL~~ll~q~~~~q  170 (1102)
                      .     ..+|..|+...+..|
T Consensus       189 ~-----~~~l~~llk~~~~~~  204 (228)
T KOG2659|consen  189 S-----EPKLPFLLKLISWAQ  204 (228)
T ss_pred             c-----cchHHHHHHHHHHHH
Confidence            1     347888885554444

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.84  E-value=9.7e-07  Score=87.89  Aligned_cols=207  Identities=16%  Similarity=0.176  Sum_probs=138.3

Q ss_pred             EEEecCCCeEEEEeCCeEEEEEcCCC--ceeeee---cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311          812 FALSKNDSYVMSASGGKISLFNMMTF--KTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  886 (1102)
Q Consensus       812 l~~s~d~~~las~sdg~I~iwd~~~~--~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l  886 (1102)
                      ++.+.||+.||+..|..|.|=..++.  ..+...   +.....=+.++||| |+.+||.+...|+|++||+....+ ..+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI   80 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence            67789999999999998888776542  122222   22334568899999 999999999999999999875433 233


Q ss_pred             cc-------ccccceeEEEecC------CCEEEEEcCCCcEEEEEcCCCcccc---eeeeecCCCCCCCCCCCcEEEEcc
Q 001311          887 KG-------HSKRITGLAFSHA------LNVLVSSGADSQLCVWSSDGWEKQK---NRFLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       887 ~~-------h~~~V~~l~~s~d------~~~l~s~s~Dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      ..       -..+|.+|.|.+-      ...|.....+|.++=|-+..+....   ........ +  .+..|.++.++|
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~-~--yp~Gi~~~vy~p  157 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS-H--YPHGINSAVYHP  157 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc-c--CCCceeEEEEcC
Confidence            21       2356777777542      1246666778888777664322111   11222221 1  125889999999


Q ss_pred             CCcEEEEEe---CC---------eEEEEEcCCceEeee---------------------e-----cc-CCCCCCeeEEEE
Q 001311          951 DQIHFLVVH---ET---------QLAIFETTKLECVKQ---------------------W-----VP-RESSAPITHATF  991 (1102)
Q Consensus       951 dg~~l~~~~---d~---------~i~iwd~~~~~~~~~---------------------~-----~~-~~h~~~v~~l~~  991 (1102)
                      ..++|++++   +.         .+..|.+-++..-..                     .     .. ......|..|.+
T Consensus       158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl  237 (282)
T PF15492_consen  158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL  237 (282)
T ss_pred             CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence            988888741   11         366676533221100                     0     00 112567999999


Q ss_pred             cCCCcEEEEEeCCCeEEEEEcCCceeEEEeCC
Q 001311          992 SCDSQLVYACFLDATVCVFSAANLKLRCRINP 1023 (1102)
Q Consensus       992 spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 1023 (1102)
                      ||||+.||+...+|.|.+|++.+.++...+..
T Consensus       238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             CCCCCEEEEEEcCCeEEEEecCcchhhcccch
Confidence            99999999999999999999999999887763

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.82  E-value=2.2e-06  Score=95.99  Aligned_cols=337  Identities=9%  Similarity=0.071  Sum_probs=184.8

Q ss_pred             eEEEEecCCCeEEEEEec----CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          350 MSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~----d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      +-..|+|.... +|+++.    .|.|-|+- ++|+......                 ..   -.+++++|+|..-.||.
T Consensus        19 ti~SWHPsePl-fAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~P---~hatSLCWHpe~~vLa~   76 (1416)
T KOG3617|consen   19 TISSWHPSEPL-FAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------YP---VHATSLCWHPEEFVLAQ   76 (1416)
T ss_pred             cccccCCCCce-eEEEEecCCCCceEEEEe-cCCCCCcccc-----------------cc---eehhhhccChHHHHHhh
Confidence            34567787774 666543    46787774 4555332111                 11   13567999999999999


Q ss_pred             EECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE--eecC--CCCeE
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGH--EAPVY  501 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~--~~~h--~~~v~  501 (1102)
                      |-.-|.+.+|...+.+.-   .....|..+|..+.||++|.  .++|+..-|.|.+|...--..++.  +..|  ...++
T Consensus        77 gwe~g~~~v~~~~~~e~h---tv~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~lt  151 (1416)
T KOG3617|consen   77 GWEMGVSDVQKTNTTETH---TVVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLT  151 (1416)
T ss_pred             ccccceeEEEecCCceee---eeccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhceee
Confidence            999999999998875422   23456999999999999999  899999999999998763222221  1112  22344


Q ss_pred             EEeeeecCCcc------EEEEEeCCCeEE-EEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311          502 SVCPHHKENIQ------FIFSTALDGKIK-AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  574 (1102)
Q Consensus       502 ~v~~~~~~~~~------~l~s~s~dg~i~-~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  574 (1102)
                      -+||--+.++.      ..+..+++..+- .++++........                  .           -.-.|+|
T Consensus       152 l~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~------------------~-----------ksgv~~g  202 (1416)
T KOG3617|consen  152 LWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD------------------E-----------KSGVPKG  202 (1416)
T ss_pred             EEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc------------------c-----------ccCCCCC
Confidence            44443333311      123333333332 2222210000000                  0           0112455


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc-CCccc---eeecccccc
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS-DGIRL---LRTFENLAY  650 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~---~~~~~~~~~  650 (1102)
                      ..++.++.+|+|+--|- .|++....+....    ..+-|.+....+++...+-++.++-+. +|...   ...+.+...
T Consensus       203 ~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~----vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~G  277 (1416)
T KOG3617|consen  203 TEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE----VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLG  277 (1416)
T ss_pred             cEEEEEcCCceEEEEcC-CCcEEEEEEccch----HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccC
Confidence            67888999999988874 5665555543321    234566655555555555444444332 22000   000000000


Q ss_pred             cccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccc
Q 001311          651 DASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRS  730 (1102)
Q Consensus       651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~  730 (1102)
                      .                                                 ....++.+...|.++              .
T Consensus       278 g-------------------------------------------------rqGgiA~sEssGvLr--------------~  294 (1416)
T KOG3617|consen  278 G-------------------------------------------------RQGGIACSESSGVLR--------------K  294 (1416)
T ss_pred             C-------------------------------------------------ccCcccccccccccc--------------C
Confidence            0                                                 000122222222111              0


Q ss_pred             ccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCee
Q 001311          731 LRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVP  810 (1102)
Q Consensus       731 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~  810 (1102)
                      -.--+......+.+++++..+..+..+...|.+.+|.-....+..+      .+...|.+.+...         ..+.|+
T Consensus       295 ~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~------p~~d~w~l~~~~e---------~~g~I~  359 (1416)
T KOG3617|consen  295 SEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGD------PTIDVWTLNGKRE---------SLGKIS  359 (1416)
T ss_pred             CcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCC------CCcceEEecCchh---------hccceE
Confidence            0000122457899999999999999999999999997533322221      1344565544322         345688


Q ss_pred             EEEEecCCCeEEEEe
Q 001311          811 CFALSKNDSYVMSAS  825 (1102)
Q Consensus       811 ~l~~s~d~~~las~s  825 (1102)
                      .+.|.|-...+++-+
T Consensus       360 ~i~Wg~~k~~~avn~  374 (1416)
T KOG3617|consen  360 LIRWGPIKSTAAVNT  374 (1416)
T ss_pred             EEEeccccchhhhhh
Confidence            888888665555544

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.80  E-value=1.2e-06  Score=98.77  Aligned_cols=190  Identities=9%  Similarity=0.023  Sum_probs=124.1

Q ss_pred             CeeEEEEecCCCe-EEEEe-C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEE-EeCC--CcEEEEEeec
Q 001311          808 AVPCFALSKNDSY-VMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAI-GMDD--SSIQIYNVRV  879 (1102)
Q Consensus       808 ~i~~l~~s~d~~~-las~s-d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~las-g~~d--g~v~vwd~~~  879 (1102)
                      ......|+|||+. ++..+ +   ..|+++|+.+++...... ..+......|+| ||+.|+. .+.+  ..|+++|+.+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~  266 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNT  266 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECC-CCCEEEEEEccCCCcEEEEEECCC
Confidence            6778999999985 66544 3   459999998877654433 455567788999 7765554 4334  4688888877


Q ss_pred             ceeeeeeccccccceeEEEecCCCEEEEEcC-CC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311          880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  956 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  956 (1102)
                      ++. ..+..+........|+|||+.|+-.+. .+  .|.+.|+.+++....  .  ..+.       ....|||||++|+
T Consensus       267 g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl--t--~~g~-------~~~~~SPDG~~Ia  334 (419)
T PRK04043        267 KTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV--V--FHGK-------NNSSVSTYKNYIV  334 (419)
T ss_pred             CcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC--c--cCCC-------cCceECCCCCEEE
Confidence            763 445444443456789999998876653 33  577888887654211  1  1111       1248999999998


Q ss_pred             EE-eC---------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC---eEEEEEcCCc
Q 001311          957 VV-HE---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA---TVCVFSAANL 1015 (1102)
Q Consensus       957 ~~-~d---------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg---~I~vwd~~~~ 1015 (1102)
                      .. ..         ..|.+.|+.++.... +...   .......|+|||+.|+..+.++   .+.+.+++..
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~---~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN---GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC---CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence            73 22         368888998887543 3321   2233588999999887666442   3666676543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.80  E-value=1.8e-06  Score=91.12  Aligned_cols=224  Identities=14%  Similarity=0.112  Sum_probs=139.1

Q ss_pred             CCeEEEEEcCCCceeeeecCC--CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCC
Q 001311          826 GGKISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN  903 (1102)
Q Consensus       826 dg~I~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~  903 (1102)
                      +|+|..||..+++.+......  .....+..+ + ++..+++++.++.|+.||..+|+.+..... .+.+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-P-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-E-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-E-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            578999999999988776531  122222233 2 455666778999999999999998877764 23222222 22455


Q ss_pred             EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCC
Q 001311          904 VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES  982 (1102)
Q Consensus       904 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h  982 (1102)
                      .++.++.|+.|..+|..+++..-..........    ..........++..++++ .++.|..+|..+|+.+........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA----GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC----STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeecccccccc----ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            666666888999999999876433112111110    111222333336666665 599999999999999877764221


Q ss_pred             C--C------CeeEEEEcCCCcEEEEEeCCCe-EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311          983 S--A------PITHATFSCDSQLVYACFLDAT-VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus       983 ~--~------~v~~l~~spd~~~l~s~s~Dg~-I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
                      .  .      .+..-.+..++ .++.++.++. +.+ |+.+++.+-+..     ..+     ..  . .... ++..|+.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~--~-~~~~-~~~~l~~  217 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IY--S-LPSV-DGGTLYV  217 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------EC--E-CEEC-CCTEEEE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----cc--C-Ccee-eCCEEEE
Confidence            1  1      11222233345 6666777775 555 999999664222     111     11  1 1233 4677787


Q ss_pred             EecCCcEEEEeccCCCcccc
Q 001311         1054 GLSDGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus      1054 ~~~Dg~v~vW~~~~~~~~~~ 1073 (1102)
                      ++.|+.|..||+.+++.+|.
T Consensus       218 ~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  218 TSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCEEEEEECCCCCEEeE
Confidence            77999999999999998875

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.78  E-value=1.4e-06  Score=84.85  Aligned_cols=242  Identities=13%  Similarity=0.082  Sum_probs=153.8

Q ss_pred             CCeEEEEe-CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  895 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  895 (1102)
                      ..+||.|+ .|...+|...+.+.. +....|...|+-+.=.-+...-+..++.|.++++.++.-+.....+.-..-.+.+
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns  163 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS  163 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence            34778776 799999999865543 2333344433322111112334566788889999988765433333222223788


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEe
Q 001311          896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECV  974 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~  974 (1102)
                      +++++|++++++.+....|..|.++..............     ...-....|+.....+|++ .||.+.|||++.....
T Consensus       164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-----~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-----SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-----CCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence            999999999999999999999999864322222111111     1233678899999999985 9999999999875433


Q ss_pred             eee---ccCCCCCCeeEEEEcCCCc--EEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC
Q 001311          975 KQW---VPRESSAPITHATFSCDSQ--LVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN 1049 (1102)
Q Consensus       975 ~~~---~~~~h~~~v~~l~~spd~~--~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~ 1049 (1102)
                      ...   ....|.+.+..+.|++-|.  +|+..-.-+.+.|-|+.+++-...+.+....-..|....+.  .-.|+. ++.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~if--gt~f~~-~n~  315 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIF--GTNFNN-ENE  315 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccc--cccccC-CCc
Confidence            221   1235899999999998664  34444456789999999999888777544443333333355  566665 334


Q ss_pred             EEEEEecCCcEEEEeccCC
Q 001311         1050 EFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1050 ~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                      -+.+.+.+ .+.-|++.+.
T Consensus       316 s~~v~~e~-~~ae~ni~sr  333 (344)
T KOG4532|consen  316 SNDVKNEL-QGAEYNILSR  333 (344)
T ss_pred             ccccccch-hhheeecccc
Confidence            44443333 3455666443

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.76  E-value=7.6e-06  Score=93.13  Aligned_cols=310  Identities=10%  Similarity=0.054  Sum_probs=170.9

Q ss_pred             EEEEecCCCcEEEEeCCCCeeeEEeecCC--CCeE-----EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCC
Q 001311          469 CVITCGDDKTIKVWDATNGAKQYIFEGHE--APVY-----SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPG  541 (1102)
Q Consensus       469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~--~~v~-----~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~  541 (1102)
                      .++.++.++.+.-+|..+|+.+....-..  ....     .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            46777778899999999999887654221  0000     0000001122467788889999999999988877665432


Q ss_pred             CeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCC---cCeEEEcCCC
Q 001311          542 RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA---SPRIRFNKDG  618 (1102)
Q Consensus       542 ~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~---v~~~~~s~~~  618 (1102)
                      ....+..                     +  .+..++.+..++.|+.+|..+|+.+..+........   ..+...  .+
T Consensus       151 ~~~ssP~---------------------v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~  205 (394)
T PRK11138        151 EALSRPV---------------------V--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AF  205 (394)
T ss_pred             ceecCCE---------------------E--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--EC
Confidence            2110000                     0  023477778899999999999999888764321000   011111  23


Q ss_pred             CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccc
Q 001311          619 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS  698 (1102)
Q Consensus       619 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1102)
                      ..++.++.+|.+..+|..++...-+ ......               .                                
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~-~~~~~~---------------~--------------------------------  237 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQ-QRISQP---------------T--------------------------------  237 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhhe-eccccC---------------C--------------------------------
Confidence            4577778889999999888732211 100000               0                                


Q ss_pred             cCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCc
Q 001311          699 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK  778 (1102)
Q Consensus       699 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~  778 (1102)
                         +      .. ..-+++++                  ...++    +  .+..++.++.++.+..+|..+++      
T Consensus       238 ---~------~~-~~~~~~~~------------------~~sP~----v--~~~~vy~~~~~g~l~ald~~tG~------  277 (394)
T PRK11138        238 ---G------AT-EIDRLVDV------------------DTTPV----V--VGGVVYALAYNGNLVALDLRSGQ------  277 (394)
T ss_pred             ---C------cc-chhccccc------------------CCCcE----E--ECCEEEEEEcCCeEEEEECCCCC------
Confidence               0      00 00000000                  00011    0  12345556667777666653221      


Q ss_pred             ccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEe
Q 001311          779 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFH  856 (1102)
Q Consensus       779 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~s  856 (1102)
                             .+|....+.              ...+..  ++..+..++ +|.+..+|..+++.+....... ....+.++.
T Consensus       278 -------~~W~~~~~~--------------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~  334 (394)
T PRK11138        278 -------IVWKREYGS--------------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY  334 (394)
T ss_pred             -------EEEeecCCC--------------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE
Confidence                   234322110              111222  334455554 8999999999988765433211 122223332


Q ss_pred             cCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee-EEEecCCCEEEEEcCCCcEEEEEc
Q 001311          857 PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG-LAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       857 p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                        + .+|+.++.||.|++.|..+|+.+...+-....+.+ ..+  .+..|+.++.||.|..++.
T Consensus       335 --~-g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        335 --N-GYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             --C-CEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence              3 46677899999999999999988776543333332 222  2447888899999888764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.75  E-value=2.6e-06  Score=96.19  Aligned_cols=157  Identities=9%  Similarity=0.002  Sum_probs=98.6

Q ss_pred             CCeeEEEEecCCCeEEEE-Eec--CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311          347 SSPMSMDFHPVQQTLLLV-GTN--VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  423 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llas-g~~--d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  423 (1102)
                      +.+...+|||||+++++. ...  +..|.++|+.+++...                    +....+.+...+|||||+.|
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~~~~~SPDG~~l  247 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLVVSDVSKDGSKL  247 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEEeeEECCCCCEE
Confidence            377889999999864443 332  3579999999887654                    22344566778899999988


Q ss_pred             EEE-ECC--CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC-CcEEEEeCCCCeeeEEeecCCCC
Q 001311          424 GVA-YSR--HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       424 as~-~~d--~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      +.. +.+  ..|.++|+.+++..+    +..+........|+|||+.+++.+...+ ..|.+.|+.+|+..+.... ...
T Consensus       248 a~~~~~~g~~~Iy~~dl~~g~~~~----LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~  322 (419)
T PRK04043        248 LLTMAPKGQPDIYLYDTNTKTLTQ----ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN  322 (419)
T ss_pred             EEEEccCCCcEEEEEECCCCcEEE----cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc
Confidence            754 333  568888888876332    3334433445689999997444442222 2688889888776443321 111


Q ss_pred             eEEEeeeecCCccEEEEEeCC---------CeEEEEEcCCCC
Q 001311          500 VYSVCPHHKENIQFIFSTALD---------GKIKAWLYDNLG  532 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~d---------g~i~~wd~~~~~  532 (1102)
                        ...|  +++|+.|+..+..         ..|.+.|+.++.
T Consensus       323 --~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~  360 (419)
T PRK04043        323 --NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY  360 (419)
T ss_pred             --CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence              1255  5666777666543         256666766543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.74  E-value=1e-07  Score=98.46  Aligned_cols=158  Identities=13%  Similarity=0.114  Sum_probs=107.9

Q ss_pred             ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE----eCCeEEEEEc
Q 001311          893 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFET  968 (1102)
Q Consensus       893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----~d~~i~iwd~  968 (1102)
                      ...+..++++++||++..+....++++..... ...++......    ..-+.+.|..+.....++    ....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~----~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP----KRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc----cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            34456677888888888887777777765443 22222222211    133566666665555542    3445666666


Q ss_pred             CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311          969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus       969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
                      ..+.+...+   ||-+.++.++||||+++|+++..|..|||-.++.--.+..+      +-||..- |.  .++--+  +
T Consensus       140 ~~~~~~~~l---GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf------clGH~eF-VS--~isl~~--~  205 (390)
T KOG3914|consen  140 DSGRCEPIL---GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF------CLGHKEF-VS--TISLTD--N  205 (390)
T ss_pred             cccCcchhh---hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh------ccccHhh-ee--eeeecc--C
Confidence            655554443   89999999999999999999999999999887765444333      2355333 55  455544  5


Q ss_pred             CEEEEEecCCcEEEEeccCCC
Q 001311         1049 NEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1049 ~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +.|+++|.|++|++||+.++.
T Consensus       206 ~~LlS~sGD~tlr~Wd~~sgk  226 (390)
T KOG3914|consen  206 YLLLSGSGDKTLRLWDITSGK  226 (390)
T ss_pred             ceeeecCCCCcEEEEecccCC
Confidence            789999999999999999998

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.71  E-value=6.4e-08  Score=106.47  Aligned_cols=256  Identities=12%  Similarity=0.174  Sum_probs=162.7

Q ss_pred             CeeEEEEecCC--CeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEE
Q 001311          348 SPMSMDFHPVQ--QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFG  424 (1102)
Q Consensus       348 ~v~~v~~spdg--~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~la  424 (1102)
                      .|-.+.|||.-  .+ -++......-+||++.......                ..-.+.||...|+.+.|.| .-..||
T Consensus        69 ~vad~qws~h~a~~~-wiVsts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n~~~q~pdVla  131 (1081)
T KOG0309|consen   69 QVADVQWSPHPAKPY-WIVSTSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDINFNPQHPDVLA  131 (1081)
T ss_pred             hhcceecccCCCCce-eEEecCcchhhhhhhhcCCccc----------------eEEEEecCccceeccccCCCCCccee
Confidence            45566676642  22 3444445667789986432221                1115789999999999999 567899


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCeEEE
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSV  503 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v~~v  503 (1102)
                      +++.|..|..||+.+...  .+.....-...-..|+|+.-..  .+...+..+.|++||++.| .++..+++|...|+.+
T Consensus       132 tcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~  207 (1081)
T KOG0309|consen  132 TCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI  207 (1081)
T ss_pred             eccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence            999999999999998653  3333434445667899998777  3666677789999999876 5678899999999998


Q ss_pred             eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec-CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      .|..... ..+.+++.||+|++||.+......... .....+..-++.|-|.-.          ++-....++.+..-.-
T Consensus       208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~----------~~mp~~G~n~v~~~~c  276 (1081)
T KOG0309|consen  208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGY----------CIMPMVGGNMVPQLRC  276 (1081)
T ss_pred             HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCcee----------EeccccCCeeeeeccc
Confidence            8754333 368899999999999997654333221 122334444444444311          1111111121111222


Q ss_pred             CCeEEEEECCC-cceEEEEcCCCCCCCcCeEEEcC----------CCCEEEEEECCCcEEEEEccC
Q 001311          583 DFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK----------DGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       583 dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~----------~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                      ++....|+..+ .+.++++.+|..  .|....|-.          ..-.|++-+.|.++++|-+.+
T Consensus       277 ~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  277 ENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             cchhhhhccccCCcceeeecCcch--HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence            33344455543 356788887754  343333321          234799999999999998754

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.70  E-value=6.7e-06  Score=82.06  Aligned_cols=216  Identities=14%  Similarity=0.123  Sum_probs=135.1

Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEEeecc--eeeeee---ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccce
Q 001311          853 LAFHPQDNNIIAIGMDDSSIQIYNVRVD--EVKSKL---KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  927 (1102)
Q Consensus       853 l~~sp~d~~~lasg~~dg~v~vwd~~~~--~~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~  927 (1102)
                      ++.+. +|++||+- .|..|.|-..++.  .++.+.   +...-.-..++||||+.+||.+...|+|+++|+.+.+....
T Consensus         3 ~~~~~-~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I   80 (282)
T PF15492_consen    3 LALSS-DGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVI   80 (282)
T ss_pred             eeecC-CCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEc
Confidence            45666 88888865 5777777655431  222222   22333456799999999999999999999999987543221


Q ss_pred             eeeecCCCCCCCCCCCcEEEEccCC-------cEEEEEeCCeEEEEEcCCc-----eEeeeeccCC-CCCCeeEEEEcCC
Q 001311          928 RFLQIPTGRTPTAQSDTRVQFHQDQ-------IHFLVVHETQLAIFETTKL-----ECVKQWVPRE-SSAPITHATFSCD  994 (1102)
Q Consensus       928 ~~~~~~~~~~~~~~~v~~~~~spdg-------~~l~~~~d~~i~iwd~~~~-----~~~~~~~~~~-h~~~v~~l~~spd  994 (1102)
                      ......  .......|..+.|-.--       .+|+....|.++-|-+..+     +.-..+.... +...|.++.+.|.
T Consensus        81 ~p~~~~--~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~  158 (282)
T PF15492_consen   81 PPAMSF--PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK  158 (282)
T ss_pred             Cccccc--CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCC
Confidence            111111  11122466777776532       4566678888888876332     2333333323 3778999999999


Q ss_pred             CcEEEEEeC----C-------CeEEEEEcCCceeEEEeCC---------------------CcccCCCCCCCcccceEEE
Q 001311          995 SQLVYACFL----D-------ATVCVFSAANLKLRCRINP---------------------SAYLPAGVSSSNVHPLVIA 1042 (1102)
Q Consensus       995 ~~~l~s~s~----D-------g~I~vwd~~~~~~~~~~~~---------------------~~~~~~gh~~~~v~~~~v~ 1042 (1102)
                      .++|++|+.    |       .-+..|.+-++........                     ..+...+.....|.  .+.
T Consensus       159 h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~--kmS  236 (282)
T PF15492_consen  159 HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIF--KMS  236 (282)
T ss_pred             CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceE--EEE
Confidence            998877763    1       1377887755544322110                     00111111122244  777


Q ss_pred             ecCCCCCEEEEEecCCcEEEEeccCCC--cccccC
Q 001311         1043 AHPQEPNEFALGLSDGGVHVFEPLESE--GKWGVP 1075 (1102)
Q Consensus      1043 f~p~d~~~l~s~~~Dg~v~vW~~~~~~--~~~~~~ 1075 (1102)
                      .+| ||..||+.+.+|.|.+|++.+-.  +.|...
T Consensus       237 lSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  237 LSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            888 68999999999999999998766  666654

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.70  E-value=9e-06  Score=84.04  Aligned_cols=245  Identities=15%  Similarity=0.152  Sum_probs=149.0

Q ss_pred             eEEEEecCCCeEEEEEecCC-eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC
Q 001311          350 MSMDFHPVQQTLLLVGTNVG-DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  428 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~d~-~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~  428 (1102)
                      -.++.+|+....++.+-.-| ...+||..+++......           .-....|.||      -.||+||++|.+.-.
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~-----------a~~gRHFyGH------g~fs~dG~~LytTEn   70 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLW-----------APPGRHFYGH------GVFSPDGRLLYTTEN   70 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEc-----------CCCCCEEecC------EEEcCCCCEEEEecc
Confidence            46778886655677777666 47899999998876411           1222346677      689999999998643


Q ss_pred             -----CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec----------------CCCcEEEEeCCCC
Q 001311          429 -----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG----------------DDKTIKVWDATNG  487 (1102)
Q Consensus       429 -----d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~----------------~d~~i~vWd~~~~  487 (1102)
                           .|.|-|||...  .++.+.++..|.-.-..+.+.|||+.++++-|+                .+-++.+-|..+|
T Consensus        71 d~~~g~G~IgVyd~~~--~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG  148 (305)
T PF07433_consen   71 DYETGRGVIGVYDAAR--GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG  148 (305)
T ss_pred             ccCCCcEEEEEEECcC--CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC
Confidence                 47899999993  244555677777677889999999864444443                2335677777888


Q ss_pred             eeeEE--e--ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC--CeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311          488 AKQYI--F--EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG--SRVDYEAPGRWCTTMAYSADGTRTYQGFR  561 (1102)
Q Consensus       488 ~~~~~--~--~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  561 (1102)
                      +.+..  +  .-|...|..+++.  .+|.. +.+..      |.-....  .+.-+......+..+...++.    ...-
T Consensus       149 ~ll~q~~Lp~~~~~lSiRHLa~~--~~G~V-~~a~Q------~qg~~~~~~PLva~~~~g~~~~~~~~p~~~----~~~l  215 (305)
T PF07433_consen  149 ALLEQVELPPDLHQLSIRHLAVD--GDGTV-AFAMQ------YQGDPGDAPPLVALHRRGGALRLLPAPEEQ----WRRL  215 (305)
T ss_pred             ceeeeeecCccccccceeeEEec--CCCcE-EEEEe------cCCCCCccCCeEEEEcCCCcceeccCChHH----HHhh
Confidence            88765  4  3377778888864  44433 33322      1111100  011111111111111111000    0011


Q ss_pred             cCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311          562 KRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       562 ~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  632 (1102)
                      .+.+.+|+++.++.++++.+ ..+.+.+||..+++.+......    .+..++..+++ ++++.+ .|.+..
T Consensus       216 ~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~----D~cGva~~~~~-f~~ssG-~G~~~~  281 (305)
T PF07433_consen  216 NGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP----DACGVAPTDDG-FLVSSG-QGQLIR  281 (305)
T ss_pred             CCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC----ceeeeeecCCc-eEEeCC-CccEEE
Confidence            24667788888887776655 6889999999999988877643    45667776666 454443 455433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.68  E-value=3e-05  Score=88.21  Aligned_cols=211  Identities=9%  Similarity=0.009  Sum_probs=120.9

Q ss_pred             CCeEEEEEcCCCceeeeecCCCCC-----eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc----c---cc
Q 001311          826 GGKISLFNMMTFKTMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS----K---RI  893 (1102)
Q Consensus       826 dg~I~iwd~~~~~~~~~~~~~~~~-----i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~----~---~V  893 (1102)
                      ++.|.-+|.++++.+.........     ..+-...  ++ .++.++.+|.+..+|..+|+.+.......    .   ..
T Consensus       169 ~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~  245 (394)
T PRK11138        169 NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRL  245 (394)
T ss_pred             CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcc
Confidence            666777777777766555422110     0111122  23 46667788999999998887665432110    0   01


Q ss_pred             eeEEEec--CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001311          894 TGLAFSH--ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  971 (1102)
Q Consensus       894 ~~l~~s~--d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~  971 (1102)
                      ..+.-+|  .+..++.++.++.+..+|..+++..-..    ..+      ....+.. .++..++...++.+..+|..+|
T Consensus       246 ~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~----~~~------~~~~~~~-~~~~vy~~~~~g~l~ald~~tG  314 (394)
T PRK11138        246 VDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR----EYG------SVNDFAV-DGGRIYLVDQNDRVYALDTRGG  314 (394)
T ss_pred             cccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee----cCC------CccCcEE-ECCEEEEEcCCCeEEEEECCCC
Confidence            1111122  2456767778999999999988643211    111      1111222 2344444468899999999999


Q ss_pred             eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311          972 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus       972 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
                      +.+-...... .....+..+  .+.+|+.++.||.|++.|..+|+.+.+.+.    ..+  .  +.. +-...   +..|
T Consensus       315 ~~~W~~~~~~-~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~----~~~--~--~~s-~P~~~---~~~l  379 (394)
T PRK11138        315 VELWSQSDLL-HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKV----DSS--G--FLS-EPVVA---DDKL  379 (394)
T ss_pred             cEEEcccccC-CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEc----CCC--c--cee-CCEEE---CCEE
Confidence            8754332111 111222222  255678889999999999999999887762    111  0  110 11111   3578


Q ss_pred             EEEecCCcEEEEec
Q 001311         1052 ALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1052 ~s~~~Dg~v~vW~~ 1065 (1102)
                      +.++.||.|+.++.
T Consensus       380 ~v~t~~G~l~~~~~  393 (394)
T PRK11138        380 LIQARDGTVYAITR  393 (394)
T ss_pred             EEEeCCceEEEEeC
Confidence            88899999998875

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.66  E-value=4.4e-06  Score=81.53  Aligned_cols=232  Identities=11%  Similarity=0.032  Sum_probs=151.2

Q ss_pred             CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCc
Q 001311          617 DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  696 (1102)
Q Consensus       617 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1102)
                      ...+|+.|+..|...+|...+....+.....+...+...        .                                
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~--------~--------------------------------  122 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLV--------K--------------------------------  122 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhh--------h--------------------------------
Confidence            456899999999999999887644444433332221100        0                                


Q ss_pred             cccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc--ceEEEEEccCCceEEEeecCceEEeeeccccccC
Q 001311          697 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT--KISRLIFTNSGNAILALASNAIHLLWKWQRTERN  774 (1102)
Q Consensus       697 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  774 (1102)
                      ..-.....+..++.|.++++.++.........         |..  .+.++.+++|++++++.+....|..|.++.... 
T Consensus       123 r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~---------h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se-  192 (344)
T KOG4532|consen  123 RYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV---------HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE-  192 (344)
T ss_pred             hhcccccceeeccCCcceeEEEEecCccccee---------eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc-
Confidence            00011234556677788888887754332222         222  378899999999999999999999988754221 


Q ss_pred             CCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceee-----eecCCCC
Q 001311          775 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-----TFMPPPP  848 (1102)
Q Consensus       775 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~-----~~~~~~~  848 (1102)
                                         ......+..  ....-.+..|+.....+|++. ||++.|||++......     +-..|.+
T Consensus       193 -------------------y~~~~~~a~--t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG  251 (344)
T KOG4532|consen  193 -------------------YIENIYEAP--TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG  251 (344)
T ss_pred             -------------------eeeeeEecc--cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC
Confidence                               111111111  344456788999999999999 9999999998654332     2345888


Q ss_pred             CeeEEEEecCCC--cEEEEEeCCCcEEEEEeecceeeeeec-------ccc-ccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311          849 AATFLAFHPQDN--NIIAIGMDDSSIQIYNVRVDEVKSKLK-------GHS-KRITGLAFSHALNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       849 ~i~~l~~sp~d~--~~lasg~~dg~v~vwd~~~~~~~~~l~-------~h~-~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  918 (1102)
                      .+..+.|++ .|  .+|...-.-+.+.|.|+++++-.+.+.       .|. ..|..-.|+.++.-+.+.+++. +.-|+
T Consensus       252 a~R~c~Fsl-~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~n  329 (344)
T KOG4532|consen  252 AFRVCRFSL-YGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYN  329 (344)
T ss_pred             ceEEEEecC-CCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheee
Confidence            999999997 44  355555556789999999876444332       233 3388888888887777666654 56677


Q ss_pred             cCC
Q 001311          919 SDG  921 (1102)
Q Consensus       919 ~~~  921 (1102)
                      +.+
T Consensus       330 i~s  332 (344)
T KOG4532|consen  330 ILS  332 (344)
T ss_pred             ccc
Confidence            665

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.66  E-value=0.0025  Score=74.39  Aligned_cols=560  Identities=10%  Similarity=0.089  Sum_probs=275.8

Q ss_pred             EEccCCCeEEEEECCCeEEEEEcc-CCceeee---EEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee
Q 001311          415 IWSPDGSLFGVAYSRHIVQIYSYH-GGDEVRQ---HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  490 (1102)
Q Consensus       415 ~~spdg~~las~~~d~~v~vwd~~-~~~~~~~---~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~  490 (1102)
                      ....+|.+...|..+|.+...-+. +++....   ....-+...-..|+..-++|   ++..|+.-|.=.+-.+.+....
T Consensus       264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~  340 (1096)
T KOG1897|consen  264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV  340 (1096)
T ss_pred             cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence            345678888888888887766555 4433221   12233555566778887777   5888887766566655543222


Q ss_pred             -------EEeecCCCCeEEEeeeecC--CccEEEEEe---CCCeEEEEEcCCC------------CCeeeecC----CCC
Q 001311          491 -------YIFEGHEAPVYSVCPHHKE--NIQFIFSTA---LDGKIKAWLYDNL------------GSRVDYEA----PGR  542 (1102)
Q Consensus       491 -------~~~~~h~~~v~~v~~~~~~--~~~~l~s~s---~dg~i~~wd~~~~------------~~~~~~~~----~~~  542 (1102)
                             .++. .-++|..++.....  .+..+++|+   .||++|+..-.-+            +..+.++.    ...
T Consensus       341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d  419 (1096)
T KOG1897|consen  341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYD  419 (1096)
T ss_pred             Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCC
Confidence                   2333 45688888765433  334566654   3788888642211            11111110    000


Q ss_pred             e---------eeEEEEccC--------------------------------Cceeeecc-------ccCceeEEEEcCCC
Q 001311          543 W---------CTTMAYSAD--------------------------------GTRTYQGF-------RKRSLGVVQFDTTK  574 (1102)
Q Consensus       543 ~---------v~~~~~s~~--------------------------------~~~~~~~~-------~~~~i~~~~~~~~~  574 (1102)
                      .         -..+.++++                                +-+++.+.       ....+++...+-+.
T Consensus       420 ~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~  499 (1096)
T KOG1897|consen  420 NYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANA  499 (1096)
T ss_pred             cEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecc
Confidence            0         000111111                                00111111       00112222222222


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC--C----CEEEEEECCCcEEEEEccCCccceeecccc
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD--G----CLLAVSTNDNGIKILATSDGIRLLRTFENL  648 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~--~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  648 (1102)
                      ..++.++.++.+...++..+. +.....+.-...|.|+.++|-  +    +++++|..+..+.+.-.......+....- 
T Consensus       500 sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l-  577 (1096)
T KOG1897|consen  500 SQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQL-  577 (1096)
T ss_pred             eEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeecc-
Confidence            345555555555555555444 222222233346888989873  2    27888877766655433222111111100 


Q ss_pred             cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCC--CCC
Q 001311          649 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS--EPN  726 (1102)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~--~~~  726 (1102)
                      ....           -|                   .......      +..+..+|.++..||.+.-|.+....  ...
T Consensus       578 ~~~~-----------iP-------------------RSIl~~~------~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd  621 (1096)
T KOG1897|consen  578 SGEI-----------IP-------------------RSILLTT------FEGDIHYLLVALGDGALLYFVLDINTGQLSD  621 (1096)
T ss_pred             CCCc-----------cc-------------------hheeeEE------eeccceEEEEEcCCceEEEEEEEcccceEcc
Confidence            0000           00                   0000011      11236788899999988766555322  111


Q ss_pred             ccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC
Q 001311          727 QCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE  806 (1102)
Q Consensus       727 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  806 (1102)
                      ..+.     .-...++.--.|+..++.-+-+.+|.-..+|.-                       ++++....+.. ..-
T Consensus       622 ~Kk~-----~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~-----------------------n~kLv~spls~-kev  672 (1096)
T KOG1897|consen  622 RKKV-----TLGTQPISLRTFSSKSRTAVFALSDRPTVIYSS-----------------------NGKLVYSPLSL-KEV  672 (1096)
T ss_pred             cccc-----ccCCCCcEEEEEeeCCceEEEEeCCCCEEEEec-----------------------CCcEEEeccch-HHh
Confidence            1110     113345555566666555555555544444431                       11111111100 000


Q ss_pred             CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEeC-----------C---C
Q 001311          807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMD-----------D---S  870 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~-----------d---g  870 (1102)
                      ..+..+.-+.-...++++..+.+++.-+..-+.  ++++. -......+++.+ ....+++.+.           .   .
T Consensus       673 ~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s  750 (1096)
T KOG1897|consen  673 NHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVS  750 (1096)
T ss_pred             hhhcccccccCCceEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEE
Confidence            001111111223467777777777776654332  23333 223456666665 3444444331           1   1


Q ss_pred             cEEEEEeecceeeeee--ccc--cccceeEEEecC-CCEEEEEcC----------CCcEEEEEcCCCcccceeeeecCCC
Q 001311          871 SIQIYNVRVDEVKSKL--KGH--SKRITGLAFSHA-LNVLVSSGA----------DSQLCVWSSDGWEKQKNRFLQIPTG  935 (1102)
Q Consensus       871 ~v~vwd~~~~~~~~~l--~~h--~~~V~~l~~s~d-~~~l~s~s~----------Dg~i~vwd~~~~~~~~~~~~~~~~~  935 (1102)
                      .++++|-.+.+.+...  ...  .-.|.++.|..| +.++++|..          .|.|.|+.+...............|
T Consensus       751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~G  830 (1096)
T KOG1897|consen  751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKG  830 (1096)
T ss_pred             EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeecc
Confidence            4566665554433322  111  123445558877 778887753          3677788776622211111111111


Q ss_pred             CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc--C
Q 001311          936 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA--A 1013 (1102)
Q Consensus       936 ~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~--~ 1013 (1102)
                            .  ..+..--...++++-+..|++|++.+.+.++.-.  .|..++..+.+.-.|..++.|..=+.|.+-..  .
T Consensus       831 ------a--v~aL~~fngkllA~In~~vrLye~t~~~eLr~e~--~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~  900 (1096)
T KOG1897|consen  831 ------A--VYALVEFNGKLLAGINQSVRLYEWTTERELRIEC--NISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD  900 (1096)
T ss_pred             ------c--eeehhhhCCeEEEecCcEEEEEEccccceehhhh--cccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence                  1  2222232334555677899999999986665533  66888999999999999999988887766554  4


Q ss_pred             CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311         1014 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1014 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                      .|.+.-.-  ..+.|       -|.+++.+-.  ++..+-+..+|.+++-...+.
T Consensus       901 eg~f~evA--rD~~p-------~Wmtaveil~--~d~ylgae~~gNlf~v~~d~~  944 (1096)
T KOG1897|consen  901 EGNFEEVA--RDYNP-------NWMTAVEILD--DDTYLGAENSGNLFTVRKDSD  944 (1096)
T ss_pred             CCceEEee--hhhCc-------cceeeEEEec--CceEEeecccccEEEEEecCC
Confidence            43343222  22333       2333666664  456666778898888876543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.66  E-value=3.3e-05  Score=81.63  Aligned_cols=217  Identities=15%  Similarity=0.098  Sum_probs=137.3

Q ss_pred             eEEEEec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe-cCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311          810 PCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  886 (1102)
Q Consensus       810 ~~l~~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~~~lasg~~dg~v~vwd~~~~~~~~~l  886 (1102)
                      .+++|.+ ++.++++-. .+.|..|+..++.... +....  ...+++. + ++++++ +.. +.+.++|..+++.....
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~-~g~l~v-~~~-~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRP-DGRLYV-ADS-GGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECT-TSEEEE-EET-TCEEEEETTTTEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEcc-CCEEEE-EEc-CceEEEecCCCcEEEEe
Confidence            3578887 555555554 7899999998866533 22122  7788888 5 665555 444 45566698887544333


Q ss_pred             cc-----ccccceeEEEecCCCEEEEEcCC--------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311          887 KG-----HSKRITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  953 (1102)
Q Consensus       887 ~~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  953 (1102)
                      ..     .....+.+++.++|++.++....        |.|..++.. ++.  .......       .....++|+||++
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~--~~~~~~~-------~~pNGi~~s~dg~  146 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV--TVVADGL-------GFPNGIAFSPDGK  146 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEE--EEEEEEE-------SSEEEEEEETTSS
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeE--EEEecCc-------ccccceEECCcch
Confidence            22     34567889999999988876644        446666665 232  1111111       1347899999999


Q ss_pred             EEEEE--eCCeEEEEEcCCceE----eeee-ccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcc
Q 001311          954 HFLVV--HETQLAIFETTKLEC----VKQW-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1026 (1102)
Q Consensus       954 ~l~~~--~d~~i~iwd~~~~~~----~~~~-~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~ 1026 (1102)
                      .|.++  ..+.|..|++.....    .+.+ ......+..-.+++..+|++.++....+.|.+++.+ |+++..+.    
T Consensus       147 ~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~----  221 (246)
T PF08450_consen  147 TLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE----  221 (246)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE----
T ss_pred             heeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc----
Confidence            88764  677899888863221    1222 111212358899999999988888889999999987 99988887    


Q ss_pred             cCCCCCCCcccceEEEecCCCCCEEEE
Q 001311         1027 LPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus      1027 ~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
                      ++.      -.+.+++|...|.+.|..
T Consensus       222 ~p~------~~~t~~~fgg~~~~~L~v  242 (246)
T PF08450_consen  222 LPV------PRPTNCAFGGPDGKTLYV  242 (246)
T ss_dssp             -SS------SSEEEEEEESTTSSEEEE
T ss_pred             CCC------CCEEEEEEECCCCCEEEE
Confidence            441      135589996434444443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.63  E-value=5.3e-07  Score=89.30  Aligned_cols=227  Identities=15%  Similarity=0.221  Sum_probs=142.0

Q ss_pred             CCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc--eeeeEEEeeccc------------cCEEEEEEcCCCCeeEEE
Q 001311          406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHV------------GGVNDIAFSHPNKQLCVI  471 (1102)
Q Consensus       406 ~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~--~~~~~~~l~~h~------------~~V~~v~~s~d~~~~~l~  471 (1102)
                      ...+-|+++.|...|.|||+|...|.|.+|.-+...  ..+-..++++|.            ..|..|.|..++..-.++
T Consensus        24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFL  103 (460)
T COG5170          24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFL  103 (460)
T ss_pred             cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence            345689999999999999999999999999765432  122222355564            358899998887654677


Q ss_pred             EecCCCcEEEEeCCCCee-------------------------------------e-----EEe-ecCCCCeEEEeeeec
Q 001311          472 TCGDDKTIKVWDATNGAK-------------------------------------Q-----YIF-EGHEAPVYSVCPHHK  508 (1102)
Q Consensus       472 s~~~d~~i~vWd~~~~~~-------------------------------------~-----~~~-~~h~~~v~~v~~~~~  508 (1102)
                      ..+.|++|++|.+.....                                     +     +.. ..|.-.|+++.|.  
T Consensus       104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N--  181 (460)
T COG5170         104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN--  181 (460)
T ss_pred             EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec--
Confidence            778899999998764310                                     0     011 2466667777764  


Q ss_pred             CCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC-CEEEEEeCCCeEE
Q 001311          509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIK  587 (1102)
Q Consensus       509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~  587 (1102)
                      .+...+++ +.|-.|.+|+++-....+.+         +.+-|..-   . .-...|++..|+|.. +.+.-.+..|.|+
T Consensus       182 sD~et~lS-aDdLrINLWnl~i~D~sFnI---------VDiKP~nm---e-eLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         182 SDKETLLS-ADDLRINLWNLEIIDGSFNI---------VDIKPHNM---E-ELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             Cchheeee-ccceeeeeccccccCCceEE---------EeccCccH---H-HHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            34345554 45788999988754433221         11111100   0 000123344455543 3455677899999


Q ss_pred             EEECCCcceE------E--EEcCC------CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccc
Q 001311          588 FWDMDSVQLL------T--SIDAD------GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  649 (1102)
Q Consensus       588 iwd~~~~~~~------~--~~~~~------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  649 (1102)
                      +-|++...+.      .  .+.+.      +-...|..+.|+++|+++++-+. -+++|||++..+.++.++.-|.
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~  322 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC  322 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence            9999743211      1  11111      11245778999999999997654 6899999988877777665443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.63  E-value=5.7e-07  Score=87.24  Aligned_cols=150  Identities=16%  Similarity=0.215  Sum_probs=97.9

Q ss_pred             ccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--
Q 001311          748 TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--  825 (1102)
Q Consensus       748 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--  825 (1102)
                      +--++.+++++.||.+.+++.+. .+....+.               ..        ....-.+.++...++++.++.  
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~-~~~~~~~i---------------~~--------~~~~~as~~~~~~~~~i~s~~~g  153 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDK-DLALMSRI---------------PS--------IHSGSASRKICRHGNSILSGGCG  153 (319)
T ss_pred             cccCCceEecCCCceEEEEechH-HHhhhhhc---------------cc--------ccccccccceeecccEEecCCcc
Confidence            33456689999999999887633 11100000               00        011112223334455555543  


Q ss_pred             ----CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce-eeeeeccccccceeEEEec
Q 001311          826 ----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHSKRITGLAFSH  900 (1102)
Q Consensus       826 ----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~  900 (1102)
                          -+..+.|+++..+....-......|++++-+|.-.+++++|++||.+.+||.+... ....+..|..+|+.+-|+|
T Consensus       154 ~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHp  233 (319)
T KOG4714|consen  154 NWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHP  233 (319)
T ss_pred             eEeeccceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccC
Confidence                24456666553322221111233499999999667889999999999999998864 3345688999999999998


Q ss_pred             C-CCEEEEEcCCCcEEEEEcCC
Q 001311          901 A-LNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       901 d-~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                      . +..|++++.||.+.-||..+
T Consensus       234 k~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  234 KNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             CCchheeEecCCCcEEEEcCCC
Confidence            5 68899999999999999876

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.63  E-value=0.00011  Score=77.50  Aligned_cols=226  Identities=19%  Similarity=0.198  Sum_probs=143.3

Q ss_pred             eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc-cCCCeEEEEEC
Q 001311          350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS-PDGSLFGVAYS  428 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~las~~~  428 (1102)
                      .+++|.+....|+.+.-..+.|..|+..+++....                    ...  ....+++. +++ .|+.+..
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------~~~--~~~G~~~~~~~g-~l~v~~~   59 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------DLP--GPNGMAFDRPDG-RLYVADS   59 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------ESS--SEEEEEEECTTS-EEEEEET
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------ecC--CCceEEEEccCC-EEEEEEc
Confidence            46789985555788887889999999998866431                    111  26777888 565 4555555


Q ss_pred             CCeEEEEEccCCceeeeEEEee--c-cccCEEEEEEcCCCCeeEEEEecCC--------CcEEEEeCCCCeeeEEeecCC
Q 001311          429 RHIVQIYSYHGGDEVRQHLEID--A-HVGGVNDIAFSHPNKQLCVITCGDD--------KTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       429 d~~v~vwd~~~~~~~~~~~~l~--~-h~~~V~~v~~s~d~~~~~l~s~~~d--------~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      ++ +.++|..+++. ..+....  . .....+.+++.++|.  +.++....        +.|..++.. ++...... ..
T Consensus        60 ~~-~~~~d~~~g~~-~~~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~  133 (246)
T PF08450_consen   60 GG-IAVVDPDTGKV-TVLADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL  133 (246)
T ss_dssp             TC-EEEEETTTTEE-EEEEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE
T ss_pred             Cc-eEEEecCCCcE-EEEeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCC-CeEEEEec-Cc
Confidence            55 55559988854 3333332  1 345788999999999  56665433        457777766 55444443 35


Q ss_pred             CCeEEEeeeecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc--CceeEEEEcCCC
Q 001311          498 APVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK--RSLGVVQFDTTK  574 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~--~~i~~~~~~~~~  574 (1102)
                      ...+.++|+  ++++.| ++-+..+.|..++++.......-.                +.+.....  +....++++.+|
T Consensus       134 ~~pNGi~~s--~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~----------------~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  134 GFPNGIAFS--PDGKTLYVADSFNGRIWRFDLDADGGELSNR----------------RVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             SSEEEEEEE--TTSSEEEEEETTTTEEEEEEEETTTCCEEEE----------------EEEEE-SSSSCEEEEEEEBTTS
T ss_pred             ccccceEEC--CcchheeecccccceeEEEeccccccceeee----------------eeEEEcCCCCcCCCcceEcCCC
Confidence            567889985  445555 566778889888887543311000                11100000  134557777777


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEE-cCCCCEEEEEE
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVST  625 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~  625 (1102)
                      +..++....+.|.++|.+ |+.+..+.....  .+++++| .++.+.|++.+
T Consensus       196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~--~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  196 NLWVADWGGGRIVVFDPD-GKLLREIELPVP--RPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -EEEEEETTTEEEEEETT-SCEEEEEE-SSS--SEEEEEEESTTSSEEEEEE
T ss_pred             CEEEEEcCCCEEEEECCC-ccEEEEEcCCCC--CEEEEEEECCCCCEEEEEe
Confidence            777777789999999987 888888876522  6889999 46777777654

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.62  E-value=2.2e-05  Score=81.18  Aligned_cols=207  Identities=14%  Similarity=0.096  Sum_probs=140.0

Q ss_pred             eeEEEEec-CCCeEEEEe-CC-eEEEEEcCCCceeeeecCCCCCe--eEEEEecCCCcEEEEEeC-----CCcEEEEEee
Q 001311          809 VPCFALSK-NDSYVMSAS-GG-KISLFNMMTFKTMATFMPPPPAA--TFLAFHPQDNNIIAIGMD-----DSSIQIYNVR  878 (1102)
Q Consensus       809 i~~l~~s~-d~~~las~s-dg-~I~iwd~~~~~~~~~~~~~~~~i--~~l~~sp~d~~~lasg~~-----dg~v~vwd~~  878 (1102)
                      ...++.+| ....++.+. -| ...+||..+++....+....+.-  -.-+||+ ||++|++.-.     .|.|-|||..
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence            45678888 555666666 34 58999999999888776554432  2468999 8998887643     4799999998


Q ss_pred             -cceeeeeeccccccceeEEEecCCCEEEEEcC------------------CCcEEEEEcCCCcccceeeeecCCCCCCC
Q 001311          879 -VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA------------------DSQLCVWSSDGWEKQKNRFLQIPTGRTPT  939 (1102)
Q Consensus       879 -~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  939 (1102)
                       +.+.+.++..|.-.--.|.+.|||+.|+.+-.                  +-.+..-|..+|+......+.. .-+.  
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~--  162 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ--  162 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc--
Confidence             66777888776555566889999988877632                  1234555566665433322211 1122  


Q ss_pred             CCCCcEEEEccCCcEEEEE-eCC-------eEEEEEcCCceEeeeeccC-----CCCCCeeEEEEcCCCcEEEEEe-CCC
Q 001311          940 AQSDTRVQFHQDQIHFLVV-HET-------QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACF-LDA 1005 (1102)
Q Consensus       940 ~~~v~~~~~spdg~~l~~~-~d~-------~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s-~Dg 1005 (1102)
                       .++..+++.++|..++.. ..+       -|.+++..  +.+..+...     .-...|-+|++++++.++++.| .-+
T Consensus       163 -lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg  239 (305)
T PF07433_consen  163 -LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG  239 (305)
T ss_pred             -cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence             378999999999988774 222       24444433  222222211     1257899999999998876555 567


Q ss_pred             eEEEEEcCCceeEEEeC
Q 001311         1006 TVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus      1006 ~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .+.+||..+++++....
T Consensus       240 ~~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  240 RVAVWDAATGRLLGSVP  256 (305)
T ss_pred             EEEEEECCCCCEeeccc
Confidence            89999999999997766

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.61  E-value=2.2e-07  Score=93.60  Aligned_cols=155  Identities=14%  Similarity=0.076  Sum_probs=120.3

Q ss_pred             EEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCce
Q 001311          363 LVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE  442 (1102)
Q Consensus       363 asg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~  442 (1102)
                      ++.+.+-.|-+-|++||-...                    +. -.+.|.++.|...+.++..|+.+|.|.+.|+..+..
T Consensus       228 fs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq  286 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ  286 (425)
T ss_pred             ecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc
Confidence            444556788999999885542                    22 567899999999999999999999999999986511


Q ss_pred             --eeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCee---eEEeecCCCCeEEEeeeecCCccEEEE
Q 001311          443 --VRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAPVYSVCPHHKENIQFIFS  516 (1102)
Q Consensus       443 --~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~---~~~~~~h~~~v~~v~~~~~~~~~~l~s  516 (1102)
                        ..+.. ---|...|+++.... ++.  +|++.+.+|.|++||++.-++   +.++.||-..-.-+-++..+....+++
T Consensus       287 G~~~~a~-rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s  363 (425)
T KOG2695|consen  287 GNGWCAQ-RLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFS  363 (425)
T ss_pred             CCCcceE-EEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEE
Confidence              11111 224889999998877 455  799999999999999998777   899999977665565666666678999


Q ss_pred             EeCCCeEEEEEcCCCCCeeeecCCC
Q 001311          517 TALDGKIKAWLYDNLGSRVDYEAPG  541 (1102)
Q Consensus       517 ~s~dg~i~~wd~~~~~~~~~~~~~~  541 (1102)
                      ++.|...|+|.++.+..+.+++.+.
T Consensus       364 ~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  364 VGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ccCeeEEEEEecccCceeeccCCCC
Confidence            9999999999999887776665543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.60  E-value=7.6e-06  Score=91.88  Aligned_cols=115  Identities=17%  Similarity=0.292  Sum_probs=86.3

Q ss_pred             eEEEEEccCCCeEEEEEC----CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311          411 VNRVIWSPDGSLFGVAYS----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  486 (1102)
Q Consensus       411 V~~l~~spdg~~las~~~----d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~  486 (1102)
                      -+-.+|+|...++|+++-    .|.|.||- ++|+.-+. .+..-   .+++++|.|..-  +|+.|-.-|.+.+|...+
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~-Vt~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~   90 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRD-VTYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT   90 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcc-cccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence            344679999999998864    47788874 34443221 12222   356799999876  788888889999999887


Q ss_pred             CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe
Q 001311          487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR  534 (1102)
Q Consensus       487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~  534 (1102)
                      .+.-.....|..+|..+.|+  ++|..++++..-|.|.+|..+..+..
T Consensus        91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~  136 (1416)
T KOG3617|consen   91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEI  136 (1416)
T ss_pred             ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeecccc
Confidence            77766777899999999985  56679999999999999988754433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.58  E-value=5.9e-07  Score=87.11  Aligned_cols=210  Identities=12%  Similarity=0.156  Sum_probs=125.5

Q ss_pred             eeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC
Q 001311          349 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  428 (1102)
Q Consensus       349 v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~  428 (1102)
                      |+.+.|+-+-  +|+++..++.+......++.+...     |+-..+..  +...+..|.++-.+-+.+--+..+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~~-----~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCISL-----WERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEech-----hhcccCcC--ceeeeeccCCCCCcccccccCCceEecCC
Confidence            6667676654  588888888888877766555432     21111111  11123355555455555556888999999


Q ss_pred             CCeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEecC-----CCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311          429 RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGD-----DKTIKVWDATNGAKQYIFEGHEAPVYS  502 (1102)
Q Consensus       429 d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~-----d~~i~vWd~~~~~~~~~~~~h~~~v~~  502 (1102)
                      ||.+.+++.+.-..+.  .... .|.+ -.+.+....+.  .+.+++-     -+..+.|+++..+.+..-..-...|.+
T Consensus       110 dg~~~v~s~~~~~~~~--~~i~~~~~~-~as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKDLALM--SRIPSIHSG-SASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHHHhhh--hhccccccc-ccccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            9999999987622111  1111 1211 12233333444  3333321     224556665543332221222334888


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      +|-++... +.+++|+.||.+-+||.+...... .+..|...+..+.|.|...                    ..|++++
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p--------------------~~Lft~s  243 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNP--------------------EHLFTCS  243 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCc--------------------hheeEec
Confidence            88877654 688999999999999999864332 3455666666666666543                    5699999


Q ss_pred             CCCeEEEEECCC
Q 001311          582 DDFSIKFWDMDS  593 (1102)
Q Consensus       582 ~dg~i~iwd~~~  593 (1102)
                      +||.+..||..+
T Consensus       244 edGslw~wdas~  255 (319)
T KOG4714|consen  244 EDGSLWHWDAST  255 (319)
T ss_pred             CCCcEEEEcCCC
Confidence            999999999864

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.58  E-value=0.00033  Score=68.54  Aligned_cols=148  Identities=9%  Similarity=0.007  Sum_probs=98.2

Q ss_pred             EEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec
Q 001311          459 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE  538 (1102)
Q Consensus       459 v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~  538 (1102)
                      +...+|.+. +++.|+..+.+.--|..+|+.+..-. -...|.+-+.. -+  ++++.|+..|.+++-+..++.+...+.
T Consensus        16 LVV~~dskT-~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vg--dfVV~GCy~g~lYfl~~~tGs~~w~f~   90 (354)
T KOG4649|consen   16 LVVCNDSKT-LVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VG--DFVVLGCYSGGLYFLCVKTGSQIWNFV   90 (354)
T ss_pred             EEEecCCce-EEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-EC--CEEEEEEccCcEEEEEecchhheeeee
Confidence            344456665 78889999999999999998876432 23334433322 12  579999999999999999987776554


Q ss_pred             CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC
Q 001311          539 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG  618 (1102)
Q Consensus       539 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~  618 (1102)
                      ..+..-                     .....++++..+..++.|+..+..|..+..++...+..+.  ...+-++.|-.
T Consensus        91 ~~~~vk---------------------~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~--~f~sP~i~~g~  147 (354)
T KOG4649|consen   91 ILETVK---------------------VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGG--TFVSPVIAPGD  147 (354)
T ss_pred             ehhhhc---------------------cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCc--eeccceecCCC
Confidence            332211                     1123455667899999999999999999999998776554  23345566633


Q ss_pred             CEEEEEECCCcEEEEE
Q 001311          619 CLLAVSTNDNGIKILA  634 (1102)
Q Consensus       619 ~~l~~~~~dg~i~iwd  634 (1102)
                      ..|.++...|.+.--.
T Consensus       148 ~sly~a~t~G~vlavt  163 (354)
T KOG4649|consen  148 GSLYAAITAGAVLAVT  163 (354)
T ss_pred             ceEEEEeccceEEEEc
Confidence            3344444455554433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.55  E-value=7.2e-07  Score=88.43  Aligned_cols=119  Identities=15%  Similarity=0.265  Sum_probs=89.3

Q ss_pred             CCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCc---eeeeecCCCC-----CeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          804 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK---TMATFMPPPP-----AATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~---~~~~~~~~~~-----~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                      .|...|.++.+..|.+.++++.|=.|.+|++.-..   .+..+++|.-     -|++..|+|...+.+...+..|.|++-
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            47778999999999999999999999999986322   2333455542     488999999778888889999999999


Q ss_pred             Eeeccee------ee--e--------eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc
Q 001311          876 NVRVDEV------KS--K--------LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  923 (1102)
Q Consensus       876 d~~~~~~------~~--~--------l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  923 (1102)
                      |++...+      +.  .        +.+-...|..+.|+++|+++++-+. -+|+|||+...+
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k  312 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK  312 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc
Confidence            9973211      00  1        1122356888999999999987654 469999987643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.53  E-value=0.00012  Score=76.67  Aligned_cols=205  Identities=17%  Similarity=0.193  Sum_probs=128.7

Q ss_pred             EEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee-cceeeee-
Q 001311          811 CFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKSK-  885 (1102)
Q Consensus       811 ~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~~-  885 (1102)
                      .++++.||+++.+..   ...|.|.|+...+.+.++...  .+..+-  |..++-+.+-|.||.+....+. .|+...+ 
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iy--P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIY--PSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEE--EEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEE--ecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            356777888777764   467999999998888777522  222222  3234457777889999999887 3554322 


Q ss_pred             ---eccccccc-eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCC----CCCCCCCCcEEEEccCCcEEEE
Q 001311          886 ---LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       886 ---l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                         |..-.+++ ..-+++.++..++-.+.+|.|+--|+................    ..-.++.-..+++++....|.+
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyv  254 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYV  254 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEE
Confidence               11112222 233455555566667888988888887765433333332210    0111234466889887766665


Q ss_pred             E----eCC-------eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEE-eCCCeEEEEEcCCceeEEEeC
Q 001311          958 V----HET-------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYAC-FLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       958 ~----~d~-------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~-s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      -    .++       .|.++|+.+++.+..+..   ..++.+|.++.|.+ +|++. ..++.+.|||..+|+++.+++
T Consensus       255 LMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  255 LMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            2    222       688999999999998875   34688999999887 55444 457999999999999999887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.52  E-value=2.4e-05  Score=82.41  Aligned_cols=228  Identities=15%  Similarity=0.091  Sum_probs=137.2

Q ss_pred             CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEE
Q 001311          368 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL  447 (1102)
Q Consensus       368 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~  447 (1102)
                      +|+|..||..+|+.+-...+.                .+. ....+. ..+++.++++++.++.+..||..+|+.+... 
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~----------------~~~-~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~-   62 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLG----------------PGI-GGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRF-   62 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECS----------------SSC-SSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEE-
T ss_pred             CCEEEEEECCCCCEEEEEECC----------------CCC-CCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEe-
Confidence            689999999999988753221                011 122211 3346778888899999999999999866533 


Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCC---eEEEeeeecCCccEEEEEeCCCeE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAP---VYSVCPHHKENIQFIFSTALDGKI  523 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~---v~~v~~~~~~~~~~l~s~s~dg~i  523 (1102)
                      .+.   +.+.......++.   ++.++.++.|+.+|..+|+.+... ......   .........  +..++.+..++.|
T Consensus        63 ~~~---~~~~~~~~~~~~~---v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~l  134 (238)
T PF13360_consen   63 DLP---GPISGAPVVDGGR---VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTSSGKL  134 (238)
T ss_dssp             ECS---SCGGSGEEEETTE---EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEETCSEE
T ss_pred             ecc---ccccceeeecccc---cccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEeccCcE
Confidence            222   2211112223443   555557789999999999999884 432111   111121112  4678888889999


Q ss_pred             EEEEcCCCCCeeeecCCCCee-eEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC
Q 001311          524 KAWLYDNLGSRVDYEAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       524 ~~wd~~~~~~~~~~~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  602 (1102)
                      ..+|.++++.+.......... ..+....           .....+.+. ++ .++.++.++.+..+|+.+++.+.... 
T Consensus       135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-----------~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-  200 (238)
T PF13360_consen  135 VALDPKTGKLLWKYPVGEPRGSSPISSFS-----------DINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP-  200 (238)
T ss_dssp             EEEETTTTEEEEEEESSTT-SS--EEEET-----------TEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC-
T ss_pred             EEEecCCCcEEEEeecCCCCCCcceeeec-----------ccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec-
Confidence            999999988877665533211 0000000           001111122 23 57777777754444999998665333 


Q ss_pred             CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311          603 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       603 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                      ..   .+.. ....++..|++++.++.|..||..+++.
T Consensus       201 ~~---~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  201 IS---GIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             SS----ECE-CEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             CC---CccC-CceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            21   1222 2456788888888999999999999843

...

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.52  E-value=6.6e-06  Score=86.15  Aligned_cols=215  Identities=12%  Similarity=0.094  Sum_probs=142.3

Q ss_pred             CCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC-CCcEEEEeC
Q 001311          406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDA  484 (1102)
Q Consensus       406 ~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~vWd~  484 (1102)
                      .|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+-|+.  ++.|.+. |..++++|+
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEe
Confidence            477777776554 467999999999999998654222333334778999999999999998  7888777 999999999


Q ss_pred             CCCeeeEEeec--CCCCeEEEeeeecCC-c--cEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          485 TNGAKQYIFEG--HEAPVYSVCPHHKEN-I--QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       485 ~~~~~~~~~~~--h~~~v~~v~~~~~~~-~--~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      .+-..+.-++-  -.+.+   +|..+++ -  .+-++.-.++.+.++|-....+..                   ..+.+
T Consensus        84 En~DminmiKL~~lPg~a---~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~-------------------~~fkk  141 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFA---EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD-------------------GYFKK  141 (558)
T ss_pred             eccchhhhcccccCCCce---EEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc-------------------ceecc
Confidence            87655433321  11222   2222221 1  233344457889999876544322                   11222


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC------cceEEEEc-------CCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------VQLLTSID-------ADGGLPASPRIRFNKDGCLLAVSTN  626 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------~~~~~~~~-------~~~~~~~v~~~~~s~~~~~l~~~~~  626 (1102)
                      .+..++.++.+.+.+..+++....|.|.-|....      .+....++       .........++.|+|++..+.+-..
T Consensus       142 lH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  142 LHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             cccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc
Confidence            2333455555555556788888899999999873      11111111       1112234678999999999999999


Q ss_pred             CCcEEEEEccCCccceeecc
Q 001311          627 DNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       627 dg~i~iwd~~~~~~~~~~~~  646 (1102)
                      |..|++++..++ +.++.+.
T Consensus       222 DrkVR~F~~KtG-klvqeiD  240 (558)
T KOG0882|consen  222 DRKVRGFVFKTG-KLVQEID  240 (558)
T ss_pred             ccEEEEEEeccc-hhhhhhh
Confidence            999999999998 6665554

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.51  E-value=6.5e-07  Score=90.33  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=111.8

Q ss_pred             eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-----eeeeeeccccccce
Q 001311          820 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLKGHSKRIT  894 (1102)
Q Consensus       820 ~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~~h~~~V~  894 (1102)
                      .+++|.+-.|-+-|++++... .|. ..+.|.++.|.. .++++..|+.+|.|.++|++.+     .+...+. |...|+
T Consensus       227 hfs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt  302 (425)
T KOG2695|consen  227 HFSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT  302 (425)
T ss_pred             eecccccceeEEEEeeccccc-ccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence            345556888999999886543 333 567799999997 7889999999999999999864     3444443 888999


Q ss_pred             eEEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceE
Q 001311          895 GLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC  973 (1102)
Q Consensus       895 ~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~  973 (1102)
                      ++..-. ++++|++.+.+|+|++||....+...  -+...+||..                                   
T Consensus       303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN-----------------------------------  345 (425)
T KOG2695|consen  303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVN-----------------------------------  345 (425)
T ss_pred             hhhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeecccc-----------------------------------
Confidence            988766 78899999999999999987633210  1122222211                                   


Q ss_pred             eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCC
Q 001311          974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1023 (1102)
Q Consensus       974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 1023 (1102)
                               ...-.-+-+.+....++++++|...|||.++.|.+++++..
T Consensus       346 ---------~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  346 ---------LSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             ---------cccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence                     11122223456677888899999999999999999999883

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.50  E-value=4.2e-07  Score=86.68  Aligned_cols=133  Identities=23%  Similarity=0.256  Sum_probs=98.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHhcccc-cccCccccchhhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHH
Q 001311           26 MKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEIT  104 (1102)
Q Consensus        26 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~  104 (1102)
                      ...++++|++|+++.|+..+.... .+- ..... +.|.|++|+|+|+|..++..+|+.+.|+.+.|......+.++++.
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~-~~~~~-L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~   82 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELL-KRNSS-LEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM   82 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHH-hcCCc-hhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            678999999999999999998752 111 11122 889999999999999999999999999988775444678899999


Q ss_pred             HHhccccccc--ccccccCCCchhHHHHHHHHHHhhcccCcccccccCCCccc-hHHHHHHHHHHHHHH
Q 001311          105 QLLTLENFRE--NEQLSKYGDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK-NSRLRTLINQSLNWQ  170 (1102)
Q Consensus       105 ~ll~~~~~~~--~~~~~~~~~~~~~R~~l~~~l~~~i~~~~~~~~~~~~~~~p-~~rL~~ll~q~~~~q  170 (1102)
                      .||.+....+  ...+..+- ....|.+|.+.+.+.+-...-         +| ...|+.++.+....+
T Consensus        83 ~lL~~~~~~~~~~s~~~~l~-~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   83 SLLAYPDPEEPLPSPYKELL-SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHHcCCcccccchHHHHHh-ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence            9998876654  22222222 236689999999987755322         33 357888888876543

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.47  E-value=1.4e-06  Score=90.94  Aligned_cols=213  Identities=13%  Similarity=0.080  Sum_probs=152.8

Q ss_pred             CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeeeeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCC
Q 001311          846 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG  921 (1102)
Q Consensus       846 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~  921 (1102)
                      |...|+.+....  .+++.+++-||.++.|.-.-   -+.+..+..|-+.|.+++.+.|+.++.|.+. |..++++|++.
T Consensus         8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn   85 (558)
T KOG0882|consen    8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN   85 (558)
T ss_pred             ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence            667777777664  67999999999999997542   2445667889999999999999999999877 99999999987


Q ss_pred             CcccceeeeecCCCCCCCCCCCcEEEEccCC--cEEEEE--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcE
Q 001311          922 WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ--IHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL  997 (1102)
Q Consensus       922 ~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg--~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~  997 (1102)
                      -.......+..+.+       -..+..++..  ..++++  .++.+.++|-..+.+.......-|..+|..+.+.+-+..
T Consensus        86 ~DminmiKL~~lPg-------~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds  158 (558)
T KOG0882|consen   86 FDMINMIKLVDLPG-------FAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS  158 (558)
T ss_pred             cchhhhcccccCCC-------ceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccc
Confidence            54432222222221       1122223321  244443  788999999887665444444578999999999999999


Q ss_pred             EEEEeCCCeEEEEEcCC------ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311          998 VYACFLDATVCVFSAAN------LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus       998 l~s~s~Dg~I~vwd~~~------~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +++....|.|.-|..+.      +++...++...++-.- -...-.+.++.|+| ++..+.+-+.|..|+++++.+++
T Consensus       159 ~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f-~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGk  234 (558)
T KOG0882|consen  159 AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF-PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGK  234 (558)
T ss_pred             eeeccccceeEeecCCCcccCccccccccccccchhhcc-cccccCccceEEcc-ccCcccccCcccEEEEEEeccch
Confidence            99999999999999873      2233233322222211 11224466899999 68999999999999999999997

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.47  E-value=0.00011  Score=83.16  Aligned_cols=182  Identities=12%  Similarity=0.047  Sum_probs=117.2

Q ss_pred             EecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---C-cEEEEEeecceeeeeec
Q 001311          814 LSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       814 ~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~~~~~~~l~  887 (1102)
                      +++||+.+...+  .+.+.+.|.++.+...++.-. +....+++++ +++++++.+.+   | ++..-+......+..+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            456777665444  577889999988777665532 2456789999 88888777532   2 22222221111111111


Q ss_pred             cccccceeEEEecCCCEEEEEcCCCcEEEEEcCC----CcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCC
Q 001311          888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG----WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET  961 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~  961 (1102)
                      -  ..+  -++.++|++...  .+++|.+.|..+    +..   ....++.+     .....+.+||||++++++  .+.
T Consensus       278 i--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~---v~~yIPVG-----KsPHGV~vSPDGkylyVanklS~  343 (635)
T PRK02888        278 I--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSA---LTRYVPVP-----KNPHGVNTSPDGKYFIANGKLSP  343 (635)
T ss_pred             h--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcc---eEEEEECC-----CCccceEECCCCCEEEEeCCCCC
Confidence            0  000  133457877665  367799999887    211   12222223     245899999999999994  678


Q ss_pred             eEEEEEcCCceE------------eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311          962 QLAIFETTKLEC------------VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       962 ~i~iwd~~~~~~------------~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      +|.|+|+.+.+.            +.....   .......+|.++|....|-..|..|..||+.+
T Consensus       344 tVSVIDv~k~k~~~~~~~~~~~~vvaevev---GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        344 TVTVIDVRKLDDLFDGKIKPRDAVVAEPEL---GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             cEEEEEChhhhhhhhccCCccceEEEeecc---CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            999999988653            333322   34566789999999888899999999999987

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.44  E-value=2.2e-07  Score=104.30  Aligned_cols=199  Identities=17%  Similarity=0.206  Sum_probs=144.9

Q ss_pred             CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC--cE
Q 001311          837 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS--QL  914 (1102)
Q Consensus       837 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i  914 (1102)
                      .+..+++..|....+|++|+. +.++|++|+..|.|++|++.+|.......+|.++|+-+.-+.||..+.+.+.-.  ..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            344566777888999999999 899999999999999999999999999999999999999999998877665443  46


Q ss_pred             EEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccC--CCCCCeeEEEE
Q 001311          915 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPR--ESSAPITHATF  991 (1102)
Q Consensus       915 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~  991 (1102)
                      .+|++...-.    ....+       ..-.++.|+.....-+.+ ......+||+.|+....++...  +....-++..|
T Consensus      1170 aLW~~~s~~~----~~Hsf-------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTGG----PRHSF-------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred             HHhccccccC----ccccc-------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence            7999876211    11111       244678898876655555 4457889999999877764321  12333477889


Q ss_pred             cCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311          992 SCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus       992 spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      ||+.++++   .||  .+||+...+.+.+|.....-.           .=.|+|. |..++.-+     .|||+.+-.
T Consensus      1239 sP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~~~-----------~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTDYG-----------GGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred             CCCcceEe---eCc--eeeeeccHHHHhhhhhheecc-----------cccccCC-CceEEeec-----hhhhhHHHH
Confidence            99999887   566  579999888877766222111           2347784 66666655     578876654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.43  E-value=0.00052  Score=81.58  Aligned_cols=275  Identities=14%  Similarity=0.133  Sum_probs=150.4

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  642 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  642 (1102)
                      ..|.++.|..+.+.++.+..+|.|.+-|..+......-...   .+|.+++|+||+.+++..+..+++.+-.-. - .++
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~-f-~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKD-F-EPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEecc-c-cch
Confidence            46777788888888999999999999988776544333222   358999999999999999988887765421 1 111


Q ss_pred             eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                      ....-+.+..                                                .....+..+....-..+....+
T Consensus       144 ~E~~L~~d~~------------------------------------------------~~sk~v~VGwGrkeTqfrgs~g  175 (1265)
T KOG1920|consen  144 AEKPLDADDE------------------------------------------------RKSKFVNVGWGRKETQFRGSEG  175 (1265)
T ss_pred             hccccccccc------------------------------------------------cccccceecccccceeeecchh
Confidence            1100000000                                                0011111111111111111111


Q ss_pred             CCCCcccccc---CCCcccccceEEEEEccCCceEEEee----cC-ceEEeeeccccccCCCCcccccccceeccCCCcc
Q 001311          723 SEPNQCRSLR---LPENLRATKISRLIFTNSGNAILALA----SN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI  794 (1102)
Q Consensus       723 ~~~~~~~~~~---~~~~~~~~~i~~~~~s~~g~~l~~~~----~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~  794 (1102)
                      ......+...   .+.....+.=..+.|--||.++++..    .+ +.++|||-.                       |.
T Consensus       176 r~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-----------------------g~  232 (1265)
T KOG1920|consen  176 RQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-----------------------GA  232 (1265)
T ss_pred             hhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-----------------------ch
Confidence            1000000000   00001223345689999999888733    23 788888753                       11


Q ss_pred             ccccccCCCCCCCCeeEEEEecCCCeEEEEe----CCeEEEEEcCCCc---eeeeecCCCCCeeEEEEecCCCcEEEE--
Q 001311          795 MMTNDVTDSNPEEAVPCFALSKNDSYVMSAS----GGKISLFNMMTFK---TMATFMPPPPAATFLAFHPQDNNIIAI--  865 (1102)
Q Consensus       795 ~~~~~~~~~~~~~~i~~l~~s~d~~~las~s----dg~I~iwd~~~~~---~~~~~~~~~~~i~~l~~sp~d~~~las--  865 (1102)
                      +-....   ...+--.+++|-|.|..+++..    |+.|.+|.-+..+   ..-.+.....+|..++|+. ++.+||+  
T Consensus       233 Lns~se---~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns-~sdiLAv~~  308 (1265)
T KOG1920|consen  233 LNSTSE---PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS-NSDILAVVT  308 (1265)
T ss_pred             hhcccC---cccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecC-CCCceeeee
Confidence            111000   0223345789999999999863    5679999865322   2222333344599999999 8999998  


Q ss_pred             -EeCCCcEEEEEeecce--eeeeeccccccceeEEEecCC-CEEEEEcCCCcEEEEEc
Q 001311          866 -GMDDSSIQIYNVRVDE--VKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       866 -g~~dg~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~  919 (1102)
                       ......|++|-+.+..  +.+.+.-.....  +.|+|-. ..|..-..+|...++++
T Consensus       309 ~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  309 SNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             cccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence             5555569999987742  233333222222  6676642 22333335555544443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.42  E-value=1.6e-05  Score=89.78  Aligned_cols=224  Identities=12%  Similarity=0.033  Sum_probs=138.4

Q ss_pred             cCCCeEEEEe--CCeEEEEEcCCCceeeeecC------C---------CCCeeE-----EEEecCCCcEEEE-EeCCCcE
Q 001311          816 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP------P---------PPAATF-----LAFHPQDNNIIAI-GMDDSSI  872 (1102)
Q Consensus       816 ~d~~~las~s--dg~I~iwd~~~~~~~~~~~~------~---------~~~i~~-----l~~sp~d~~~las-g~~dg~v  872 (1102)
                      .||+|+..-.  +..|...++...++-+.+.-      |         +..|.+     +=++| ||+.+.. .-..+.+
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~Plpn-DGk~l~~~~ey~~~v  217 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPN-DGKDLDDPKKYRSLF  217 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCC-CCCEeecccceeEEE
Confidence            5888888876  45566666665554333221      1         111211     22445 5554432 2334677


Q ss_pred             EEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCc--EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311          873 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       873 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      .+.|..+.+...++.-- +.-..+++++||+++++.+.+..  ..+-.+...+..........          ..-.+.+
T Consensus       218 SvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~----------~iea~vk  286 (635)
T PRK02888        218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA----------RIEEAVK  286 (635)
T ss_pred             EEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH----------HHHHhhh
Confidence            77888777666655432 23456789999999988863221  11122222111100000000          0113455


Q ss_pred             CCcEEEEEeCCeEEEEEcCC-----ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCcee-------
Q 001311          951 DQIHFLVVHETQLAIFETTK-----LECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL------- 1017 (1102)
Q Consensus       951 dg~~l~~~~d~~i~iwd~~~-----~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~------- 1017 (1102)
                      +|++..+ .++.|.+.|..+     .+.+..+..   ......+.+||||+++++++ .+.+|.|.|+.+.+.       
T Consensus       287 dGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        287 AGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CCCEEEE-CCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence            7887666 467899999998     355555443   56889999999999987655 588999999998663       


Q ss_pred             -----EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1018 -----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1018 -----~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                           +.+++    +  |     ..|+..+|.+ +|+...|..-|..|-.|++.+
T Consensus       363 ~~~~vvaeve----v--G-----lGPLHTaFDg-~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPE----L--G-----LGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeec----c--C-----CCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence                 44444    2  2     4477899988 588999999999999999987

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.39  E-value=6.8e-05  Score=88.73  Aligned_cols=275  Identities=9%  Similarity=0.132  Sum_probs=155.4

Q ss_pred             ccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311          739 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  818 (1102)
Q Consensus       739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~  818 (1102)
                      ...|.++.|-.+...++.+...|.|.+-|..+                      ......    ..-...|.+++||||+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et----------------------~~~eiv----g~vd~GI~aaswS~De  121 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPET----------------------LELEIV----GNVDNGISAASWSPDE  121 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccc----------------------cceeee----eeccCceEEEeecCCC
Confidence            36899999999999999999999988866432                      211110    1246779999999999


Q ss_pred             CeEEEEeCCeEEEEEcCCCceeeeecCC-----CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeeeecccccc
Q 001311          819 SYVMSASGGKISLFNMMTFKTMATFMPP-----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKR  892 (1102)
Q Consensus       819 ~~las~sdg~I~iwd~~~~~~~~~~~~~-----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~  892 (1102)
                      +.++..+.+...++...+...+....-+     .+....+-|-. ....+ -| ..|...-.+.... +......-| +.
T Consensus       122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rg-s~gr~~~~~~~~~ek~~~~~~~~-~~  197 (1265)
T KOG1920|consen  122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RG-SEGRQAARQKIEKEKALEQIEQD-DH  197 (1265)
T ss_pred             cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ec-chhhhcccccccccccccchhhc-cC
Confidence            9999998533334444444444332211     11122222221 00011 01 1111111111110 000111112 22


Q ss_pred             ceeEEEecCCCEEEEE-----cCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE----eCCeE
Q 001311          893 ITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQL  963 (1102)
Q Consensus       893 V~~l~~s~d~~~l~s~-----s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----~d~~i  963 (1102)
                      =++|.|--||+++|+.     ...+.|+|||-+ +....      ....  ..+.-.+++|-|.|.++++-    +|+.|
T Consensus       198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns------~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~I  268 (1265)
T KOG1920|consen  198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS------TSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDI  268 (1265)
T ss_pred             CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc------ccCc--ccccccceeecCCCCeEeeeeecCCCCcE
Confidence            3569999999999973     333789999987 32211      1110  11234789999999999982    56678


Q ss_pred             EEEEcCCceEeeeecc--CCCCCCeeEEEEcCCCcEEEE---EeCCCeEEEEEcCCceeEE--EeCCCcccCCCCCCCcc
Q 001311          964 AIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYA---CFLDATVCVFSAANLKLRC--RINPSAYLPAGVSSSNV 1036 (1102)
Q Consensus       964 ~iwd~~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~s---~s~Dg~I~vwd~~~~~~~~--~~~~~~~~~~gh~~~~v 1036 (1102)
                      .+|.-+..+. ..+..  .....+|..++|+.++..||+   ......|++|-+.+..--.  .+.    .+..     .
T Consensus       269 vffErNGL~h-g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~----~~~~-----~  338 (1265)
T KOG1920|consen  269 VFFERNGLRH-GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQ----FSQK-----A  338 (1265)
T ss_pred             EEEecCCccc-cccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEe----cccc-----c
Confidence            8888654332 22211  111344999999999999987   4455569999988765332  222    1111     1


Q ss_pred             cceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311         1037 HPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1037 ~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                         -+.|+|-....|..-..+|...+.++
T Consensus       339 ---~~~W~p~~~~~L~v~~~sG~~~v~~~  364 (1265)
T KOG1920|consen  339 ---LLMWDPVTEKTLHVLRESGQRLVRDF  364 (1265)
T ss_pred             ---cccccCCCceeEEEEecCCcEEEEEE
Confidence               26677655555555555665555444

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.38  E-value=7.4e-07  Score=62.68  Aligned_cols=39  Identities=31%  Similarity=0.555  Sum_probs=37.1

Q ss_pred             ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311          880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  918 (1102)
                      ++++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.34  E-value=1e-05  Score=91.30  Aligned_cols=189  Identities=15%  Similarity=0.148  Sum_probs=132.4

Q ss_pred             CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccce
Q 001311          848 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN  927 (1102)
Q Consensus       848 ~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~  927 (1102)
                      ..++|++++   +++++.|+.+|.|++++.. +.. .+...|+..      ..+|.+++||+.||+|.|-.+.+.+....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            457788886   4799999999999999965 333 444456554      56799999999999999999887654221


Q ss_pred             eeeecCCCCCCCCCCCcEEEEccC-----CcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe
Q 001311          928 RFLQIPTGRTPTAQSDTRVQFHQD-----QIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus       928 ~~~~~~~~~~~~~~~v~~~~~spd-----g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s 1002 (1102)
                      .  ...       .++.+++++||     .+++++|+...+.++.-.-.........+...++|.++.|  .|.++|-++
T Consensus       109 ~--df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  109 Y--DFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             E--ecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec
Confidence            1  111       36789999998     5666775444477765432222222222344789999999  588899887


Q ss_pred             CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311         1003 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1003 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      ++| |+|||+.+++.+..+.+....    -....++-.+.|.+  ...|+. |.--+|+|..+.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~----~R~e~fpphl~W~~--~~~LVI-GW~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQS----VRPELFPPHLHWQD--EDRLVI-GWGDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCC----CCcccCCCceEecC--CCeEEE-ecCCeEEEEEEe
Confidence            666 899999999999888754422    23335566788886  345555 467788998887

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.33  E-value=0.0023  Score=62.86  Aligned_cols=117  Identities=11%  Similarity=0.075  Sum_probs=84.6

Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCe
Q 001311          352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  431 (1102)
Q Consensus       352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  431 (1102)
                      +..-+|.+.+++.|+..+.+.--|..+|+...+..                 +   ...|.+-+.- -|++++.|+..|.
T Consensus        16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~We~i-----------------l---g~RiE~sa~v-vgdfVV~GCy~g~   74 (354)
T KOG4649|consen   16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI-----------------L---GVRIECSAIV-VGDFVVLGCYSGG   74 (354)
T ss_pred             EEEecCCceEEEEecCCceEEEecCCCCcEEeehh-----------------h---CceeeeeeEE-ECCEEEEEEccCc
Confidence            34456667789999999999999999998765311                 1   2233332222 4788999999999


Q ss_pred             EEEEEccCCceeeeEEEeeccccCEEE-EEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec
Q 001311          432 VQIYSYHGGDEVRQHLEIDAHVGGVND-IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  495 (1102)
Q Consensus       432 v~vwd~~~~~~~~~~~~l~~h~~~V~~-v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~  495 (1102)
                      +++-+.++|........+    +.|.+ ....+++.  ++..|+.|++.+.-|.++..++...+-
T Consensus        75 lYfl~~~tGs~~w~f~~~----~~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskc  133 (354)
T KOG4649|consen   75 LYFLCVKTGSQIWNFVIL----ETVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKC  133 (354)
T ss_pred             EEEEEecchhheeeeeeh----hhhccceEEcCCCc--eEEEecCCCcEEEecccccceEEeccc
Confidence            999999999766543222    22222 23456777  899999999999999999999988663

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=4e-05  Score=79.47  Aligned_cols=223  Identities=14%  Similarity=0.183  Sum_probs=131.5

Q ss_pred             ccCCCCCCeEEEEEccCCC-eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~-~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                      ++.+|...|..++|||..+ +|..++.+..|+|.|+++...+.   .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            6889999999999999777 78889999999999999976554   34555 78999999999987 8999999999999


Q ss_pred             EeCCCCee-eEEeec--CCCCeEEEeeee----cCCccEEEEEeCCCeEEEEEcCCCCCe--eeecCC-CCeeeEEEEcc
Q 001311          482 WDATNGAK-QYIFEG--HEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLGSR--VDYEAP-GRWCTTMAYSA  551 (1102)
Q Consensus       482 Wd~~~~~~-~~~~~~--h~~~v~~v~~~~----~~~~~~l~s~s~dg~i~~wd~~~~~~~--~~~~~~-~~~v~~~~~s~  551 (1102)
                      +|++..+- +..+.+  ...+|..++..+    .+.|.+++..+.  .+.+|++......  ..++.. .+.+.++...+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99986543 222222  233444333110    011223443332  2445654322111  111111 11222222222


Q ss_pred             ----------------------------CCcee------eeccccCc---eeEEEEcCCCCEEEE-EeCCCeEEEEECCC
Q 001311          552 ----------------------------DGTRT------YQGFRKRS---LGVVQFDTTKNRFLA-AGDDFSIKFWDMDS  593 (1102)
Q Consensus       552 ----------------------------~~~~~------~~~~~~~~---i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~  593 (1102)
                                                  +|..+      +.|.....   -..+.-.++.++++. +++.+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence                                        11111      10111000   011222344455555 55678999999999


Q ss_pred             cceEEEEcCCCCCCCcCeEEEcC-C-CCEEEEEECCCcEEEEEcc
Q 001311          594 VQLLTSIDADGGLPASPRIRFNK-D-GCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       594 ~~~~~~~~~~~~~~~v~~~~~s~-~-~~~l~~~~~dg~i~iwd~~  636 (1102)
                      ++.++++....   .|..++... + +.+|++-+ |..++||..+
T Consensus       421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence            99999998653   465555433 3 34555554 5688887643

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.26  E-value=1.2e-05  Score=91.66  Aligned_cols=181  Identities=15%  Similarity=0.173  Sum_probs=133.7

Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccccee
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITG  895 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~  895 (1102)
                      ++..++.|+ ...+..+|+.+.+..+...-..+.|+-+..   +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            444566666 778889999988887777655656666655   6789999999999999999999999999999999986


Q ss_pred             EEEecCCCEEEEEcC---------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC--CcEEEEEeCCeEE
Q 001311          896 LAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLVVHETQLA  964 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~d~~i~  964 (1102)
                      +..  .|+.|+++|.         |.-|+|||+..-+..  .++++..+       ..-+.|.|.  .+..+++..|...
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral--~PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL--SPIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhcc--CCcccccC-------chhhhhcccccceEEEEeccccee
Confidence            655  6889999876         556899999875432  22333332       245677774  3444447888888


Q ss_pred             EEEcCCce-E-eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          965 IFETTKLE-C-VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       965 iwd~~~~~-~-~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                      +-|..+.. . ......+.-...+..+++|++|..||.|..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            88843321 1 11222223355699999999999999999999999997

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=6.9e-05  Score=85.34  Aligned_cols=206  Identities=14%  Similarity=0.168  Sum_probs=132.8

Q ss_pred             EEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ceeEEEecCCCEEEEEcCCCc-----EEEEEcCCCcccc-
Q 001311          854 AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQK-  926 (1102)
Q Consensus       854 ~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~-  926 (1102)
                      +|++ ++..+|.|+.+|.|.+++ .+.+.+..++++... |+.+-...+..+|++.+.|+.     |+||+++..+... 
T Consensus        30 c~~s-~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSS-STGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcC-CCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            3566 778999999999999887 345566788888777 555554445578999888764     8999998764333 


Q ss_pred             eeee---ecCCCCCC-CCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC--ceEeeeeccCCCCCCeeEEEEcCCCcEEE
Q 001311          927 NRFL---QIPTGRTP-TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK--LECVKQWVPRESSAPITHATFSCDSQLVY  999 (1102)
Q Consensus       927 ~~~~---~~~~~~~~-~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~h~~~v~~l~~spd~~~l~  999 (1102)
                      ..++   .......+ .+.++..++.+.+-+.+|+| .+|.|..+.-+-  .+-.+.-..+....+|+.+++..|++.++
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            3333   22221111 24678899999999999998 888888885322  11112222223378999999999999844


Q ss_pred             EEeCCCeEEEEEcCCcee-EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccc
Q 001311         1000 ACFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus      1000 s~s~Dg~I~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1073 (1102)
                      -+..-..|.+|.+....+ .+.+.        +++....  +.+|++..+ .++++ .+..|.+++....+..|.
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld--------~~G~~ln--Css~~~~t~-qfIca-~~e~l~fY~sd~~~~cfa  250 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLD--------NNGISLN--CSSFSDGTY-QFICA-GSEFLYFYDSDGRGPCFA  250 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeec--------cCCccce--eeecCCCCc-cEEEe-cCceEEEEcCCCcceeee
Confidence            444567899999884332 22222        1122234  677776322 24444 367788888876654443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=4.4e-05  Score=79.19  Aligned_cols=243  Identities=13%  Similarity=0.104  Sum_probs=143.2

Q ss_pred             CCCCeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce-
Q 001311          805 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-  881 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-  881 (1102)
                      +...|..++|||..+ ++..++ +.+|+|.|+++..++..+..+ ..+.+++|.-++.++|..|..+|.|+|||++.-+ 
T Consensus       192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~  270 (463)
T KOG1645|consen  192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG  270 (463)
T ss_pred             cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence            788899999999988 667777 899999999999888888877 7799999999788899999999999999998633 


Q ss_pred             eeeeecc--ccccceeEE------EecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311          882 VKSKLKG--HSKRITGLA------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  953 (1102)
Q Consensus       882 ~~~~l~~--h~~~V~~l~------~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  953 (1102)
                      .+..+.+  -..+|-.|+      ..+-|.+|+....+  +..|++.........+...-     .++...++.+.+-.+
T Consensus       271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-----~pG~cismqy~~~sn  343 (463)
T KOG1645|consen  271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-----PPGICISMQYHGVSN  343 (463)
T ss_pred             hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-----CCcceeeeeecCccc
Confidence            2222222  122333333      23345556555443  67787765332111111111     112344555555445


Q ss_pred             EEEEE--eCC------eEEE-EEcCCceEeeeeccCCC-CCCe------eEEEEcCCCcEEE-EEeCCCeEEEEEcCCce
Q 001311          954 HFLVV--HET------QLAI-FETTKLECVKQWVPRES-SAPI------THATFSCDSQLVY-ACFLDATVCVFSAANLK 1016 (1102)
Q Consensus       954 ~l~~~--~d~------~i~i-wd~~~~~~~~~~~~~~h-~~~v------~~l~~spd~~~l~-s~s~Dg~I~vwd~~~~~ 1016 (1102)
                      .+..+  .+.      .+-. -|-.+|..+..... +| .+.-      ..+.=.+|..+++ ++.....+.+||..+++
T Consensus       344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~-~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~e  422 (463)
T KOG1645|consen  344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRR-TYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFE  422 (463)
T ss_pred             eEEEEecCCCCCccceeeeeeeccccCceeeeecc-cccCCcccccccccceeccccccEEEEecCCcceeEEeccchhh
Confidence            55442  211      1111 12222322222111 11 1110      1112245666665 44455789999999999


Q ss_pred             eEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      .+.++...         ..+.  .+.....++.-++..-.|..++|++.+.
T Consensus       423 vvQ~l~~~---------epv~--Dicp~~~n~~syLa~LTd~~v~Iyk~es  462 (463)
T KOG1645|consen  423 VVQTLALS---------EPVL--DICPNDTNGSSYLALLTDDRVHIYKNES  462 (463)
T ss_pred             eeeecccC---------ccee--ecceeecCCcchhhheecceEEEEecCC
Confidence            99988733         1244  4444433444444455688888887653

>smart00668 CTLH C-terminal to LisH motif

Probab=98.21  E-value=1.2e-06  Score=68.13  Aligned_cols=53  Identities=30%  Similarity=0.490  Sum_probs=42.6

Q ss_pred             cHHHHHHHHhcCCHHHHHHHhcccccccCccccchhhHHHHHhHhHHHhcCCCH
Q 001311           25 NMKYFEDEVHNGNWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDR   78 (1102)
Q Consensus        25 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~Ell~~~~~   78 (1102)
                      ++..++++|++|+|+.|++.+...........+. +.|.|++|+|+|||+.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCc
Confidence            3788999999999999999998874322222233 8999999999999998864

Alpha-helical motif of unknown function.

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.20  E-value=3.8e-06  Score=59.00  Aligned_cols=39  Identities=28%  Similarity=0.506  Sum_probs=36.5

Q ss_pred             CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311          837 FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  876 (1102)
Q Consensus       837 ~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  876 (1102)
                      ++++.++.+|.+.|++++|+| ++++|++|+.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence            357889999999999999999 899999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.20  E-value=0.001  Score=69.89  Aligned_cols=245  Identities=13%  Similarity=0.143  Sum_probs=144.3

Q ss_pred             eeEEEEecCCCeEEEEe-----------CCeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCcEEEEEe--C
Q 001311          809 VPCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM--D  868 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s-----------dg~I~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~--~  868 (1102)
                      .-.+.++||++.+++++           ...|.+||..+.....++.-...       ....++++. |++++.+..  -
T Consensus        38 ~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TP  116 (342)
T PF06433_consen   38 LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTP  116 (342)
T ss_dssp             SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-T-TSSEEEEEEESS
T ss_pred             CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEcc-CCcEEEEEccCC
Confidence            44578899999888752           12499999999887776432221       234467777 777776643  3


Q ss_pred             CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC-CcccceeeeecCCCCCCCCCCCcEEE
Q 001311          869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQ  947 (1102)
Q Consensus       869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~  947 (1102)
                      -.+|.|.|+..++.+.++.-.  ....+--+. .+-+.+.|.||.+.-..++. |+.. ......+.....  .....-+
T Consensus       117 a~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~~F~~~~d--p~f~~~~  190 (342)
T PF06433_consen  117 ATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA-QKSTKVFDPDDD--PLFEHPA  190 (342)
T ss_dssp             SEEEEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE-EEEEEESSTTTS---B-S--E
T ss_pred             CCeEEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEEECCCCCEe-EeeccccCCCCc--ccccccc
Confidence            457888888888877766522  122222222 34678888999999998884 4433 222223322111  1223344


Q ss_pred             Ecc-CCcEEEEEeCCeEEEEEcCCceEe--eeeccC------CC--CCCeeEEEEcCCCcEEEEEeCC--------C--e
Q 001311          948 FHQ-DQIHFLVVHETQLAIFETTKLECV--KQWVPR------ES--SAPITHATFSCDSQLVYACFLD--------A--T 1006 (1102)
Q Consensus       948 ~sp-dg~~l~~~~d~~i~iwd~~~~~~~--~~~~~~------~h--~~~v~~l~~spd~~~l~s~s~D--------g--~ 1006 (1102)
                      ++. ++.++.++.+|.|+-.|+......  ..|..-      .+  .+.-.-+++.+....|++-...        +  .
T Consensus       191 ~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgte  270 (342)
T PF06433_consen  191 YSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTE  270 (342)
T ss_dssp             EETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEE
T ss_pred             eECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceE
Confidence            444 456777789999998888665422  122110      00  1233457777766555544322        1  4


Q ss_pred             EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE-ecCCcEEEEeccCCCcc
Q 001311         1007 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESEGK 1071 (1102)
Q Consensus      1007 I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~-~~Dg~v~vW~~~~~~~~ 1071 (1102)
                      |.++|+.+++.+.++.    +...     +.  +|..+.++.-+|++. ..++.|.+||..+++..
T Consensus       271 VWv~D~~t~krv~Ri~----l~~~-----~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~  325 (342)
T PF06433_consen  271 VWVYDLKTHKRVARIP----LEHP-----ID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGKLV  325 (342)
T ss_dssp             EEEEETTTTEEEEEEE----EEEE-----ES--EEEEESSSS-EEEEEETTTTEEEEEETTT--EE
T ss_pred             EEEEECCCCeEEEEEe----CCCc-----cc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence            8888999999999988    3221     43  677777665577655 45899999999999833

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.14  E-value=0.0002  Score=80.10  Aligned_cols=121  Identities=10%  Similarity=0.024  Sum_probs=94.7

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      |...|.--+++..+++ ++.|+.-|.+++++-.+++.+..                  ...+-.+.+..++.|++..++|
T Consensus        32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA   92 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA   92 (726)
T ss_pred             CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence            5566777778888887 99999999999999887766542                  1233456777788999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEE---eeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLE---IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  486 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~---l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~  486 (1102)
                      .|+..|.|.|+-+..+..-.....   -..|...|+|++|++|+.  .+++|...|.|..-.+.+
T Consensus        93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen   93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEech
Confidence            999999999998877443222111   123778999999999999  699999999999988877

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.12  E-value=0.0085  Score=66.90  Aligned_cols=104  Identities=16%  Similarity=0.276  Sum_probs=64.1

Q ss_pred             ecCCCeEEEEE--------ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311          355 HPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  426 (1102)
Q Consensus       355 spdg~~llasg--------~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  426 (1102)
                      |||++++|+.-        +..+.+.|+|+++++...                    +......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence            78999866632        223679999999876654                    22225678999999999999988


Q ss_pred             ECCCeEEEEEccCCceeeeEEEeec-------c---------ccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEe
Q 001311          427 YSRHIVQIYSYHGGDEVRQHLEIDA-------H---------VGGVNDIAFSHPNKQLCVITC-GDDKTIKVWD  483 (1102)
Q Consensus       427 ~~d~~v~vwd~~~~~~~~~~~~l~~-------h---------~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd  483 (1102)
                      . ++.|.+++..++...+.  +..|       -         -+.-..+-||||+++  |+.. -.+..|+.+.
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~--la~~~~d~~~v~~~~  129 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKY--LAFLRFDEREVPEYP  129 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSE--EEEEEEE-TTS-EEE
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCE--EEEEEECCcCCceEE
Confidence            6 57899999888754432  1222       0         112356889999996  4333 3344444443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.12  E-value=5.4e-05  Score=86.48  Aligned_cols=184  Identities=11%  Similarity=0.123  Sum_probs=129.9

Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  498 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~  498 (1102)
                      ++..++-|+-...+..+|+.+.+..+.   ..--.+.|.-|+.  +++  ++.+|...|+|.+-|..+-+.++++..|++
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR~--Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~  218 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMRY--NNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG  218 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeee---eeccCCceEEEEe--cCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence            456777788888899999998876553   2222334655554  566  799999999999999999999999999999


Q ss_pred             CeEEEeeeecCCccEEEEEeC---------CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          499 PVYSVCPHHKENIQFIFSTAL---------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~---------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                      .|.++..    .|+.|+++|.         |..|+|||++..+.+..+..+.++ .-+.|.|.=.               
T Consensus       219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~---------------  278 (1118)
T KOG1275|consen  219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLT---------------  278 (1118)
T ss_pred             ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhccccc---------------
Confidence            9987753    3468888875         556899999987765544333221 1122222211               


Q ss_pred             EcCCCCEEEEEeCCCeEEEEE---CCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          570 FDTTKNRFLAAGDDFSIKFWD---MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       570 ~~~~~~~l~~~~~dg~i~iwd---~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                           ..+++++..|...+-|   +.+.. ...+..+.....+..+.+++++..++.|..+|.|.+|.-
T Consensus       279 -----t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  279 -----TRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             -----ceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence                 3577888889999888   33221 222222222335889999999999999999999999973

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00048  Score=78.82  Aligned_cols=203  Identities=13%  Similarity=0.172  Sum_probs=138.5

Q ss_pred             EEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCcEEEEEeCCC-----cEEEEEeecc----
Q 001311          812 FALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD----  880 (1102)
Q Consensus       812 l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~----  880 (1102)
                      -++++.+..++.|+ +|.|.+.+- +.+.++.++.+... |+.+-... +..+|++-++|+     .|+||+++.-    
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            45678888999998 899888874 34555778877777 44444443 556888777765     4999999742    


Q ss_pred             --eee--eeecc-----ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC
Q 001311          881 --EVK--SKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  951 (1102)
Q Consensus       881 --~~~--~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  951 (1102)
                        .++  ..+..     ...++.+++.+.+-+.+|+|-.||.|..+.=+--+....+..-...+    ..+|+.++|-.|
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~----~~pITgL~~~~d  182 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG----KEPITGLALRSD  182 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC----CCCceeeEEecC
Confidence              233  12222     24568899999999999999999999988543322222222222222    258999999999


Q ss_pred             CcE-EEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          952 QIH-FLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       952 g~~-l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      ++- +.++.-..|.+|.+.... ........|+..+.|..|++...-+++|+ +..+.+|+.+.......+.
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            988 556788899999998444 33222346788899999986555355554 5679999988666555554

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.07  E-value=1.9e-05  Score=81.11  Aligned_cols=156  Identities=14%  Similarity=0.216  Sum_probs=111.5

Q ss_pred             hhHHhHHHHHHHHhhhcCCCc--------cHHHHHHHHhcCCHHHHHHHhcccc-cccCccccchhhHHHHHhHhHHHhc
Q 001311            4 SSKKLFTSKHFLLEQESGFFF--------NMKYFEDEVHNGNWDDVEKYLSGFT-KVDDNRYSMKIFFEIRKQKYLEALD   74 (1102)
Q Consensus         4 ~~~~g~~~s~~~l~~Esg~~~--------~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~i~~q~~~Ell~   74 (1102)
                      +-.+||.++|..|-++|.+.-        ++...+++|++|+...|+...+.=+ .+...  ...+.|.+..|.|+||+.
T Consensus       126 mlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~--~S~lEf~lRlQefIELi~  203 (389)
T KOG0396|consen  126 MLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKE--ESSLEFQLRLQEFIELIK  203 (389)
T ss_pred             HHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc--cchhhhHHHHHHHHHHHH
Confidence            457899999999999999983        3888999999999999988775421 11111  222779999999999999


Q ss_pred             CCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC-chhHH-HHHHH-HHHhhcccCcccccccCC
Q 001311           75 KHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD-TKSAR-SIMLV-ELKKLIEANPLFRDKLQF  151 (1102)
Q Consensus        75 ~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~-~~~~R-~~l~~-~l~~~i~~~~~~~~~~~~  151 (1102)
                      .+++.+|+.+.++.+.|...-+.++++....+|.++...+...   |.+ -...| +.|.+ -++++.+---        
T Consensus       204 ~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t~~sk---y~~l~~~~rw~~l~~lF~s~a~~l~~--------  272 (389)
T KOG0396|consen  204 VDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYTSSSK---YLNLLTADRWSVLADLFLSEALKLFG--------  272 (389)
T ss_pred             hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccccCccc---ccCcccHHHHHHHHHHhhHHHHHHhC--------
Confidence            9999999999999999998878999999999999875543332   555 23345 33322 2333332211        


Q ss_pred             Cccch-HHHHHHHHHHHHHHHH-hc
Q 001311          152 PNLKN-SRLRTLINQSLNWQHQ-LC  174 (1102)
Q Consensus       152 ~~~p~-~rL~~ll~q~~~~q~~-~~  174 (1102)
                        +|. .+|.++|+--+..|.- .|
T Consensus       273 --i~~~~~L~~~l~~GLsalKTp~c  295 (389)
T KOG0396|consen  273 --IPINPALTIYLQAGLSALKTPRC  295 (389)
T ss_pred             --CCCCcHHHHHHHhhhhhcccccc
Confidence              222 2477777766666644 45

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.06  E-value=0.0038  Score=72.85  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=93.4

Q ss_pred             EEEecCCCcEEEEEeCCC------------------cEEEEEeecceeeeeecc--ccc----cceeEEEe----cCCC-
Q 001311          853 LAFHPQDNNIIAIGMDDS------------------SIQIYNVRVDEVKSKLKG--HSK----RITGLAFS----HALN-  903 (1102)
Q Consensus       853 l~~sp~d~~~lasg~~dg------------------~v~vwd~~~~~~~~~l~~--h~~----~V~~l~~s----~d~~-  903 (1102)
                      .++.+ .+.+++.++.++                  .|.-+|..+|+.+-..+.  |..    ......+.    -++. 
T Consensus       222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            45555 456777777665                  799999999998876542  211    00111111    1343 


Q ss_pred             --EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE------------------EeCCeE
Q 001311          904 --VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV------------------VHETQL  963 (1102)
Q Consensus       904 --~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~------------------~~d~~i  963 (1102)
                        .++.++.+|.+...|.++|+..-......           ..++.+| +...+.                  ..++.+
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l  368 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGL  368 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC-ceEEEccccccccCcccccCCCCCCCceEE
Confidence              57788899999999999987643322110           1122233 111111                  135677


Q ss_pred             EEEEcCCceEeeeeccCCCC------CCe--eEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          964 AIFETTKLECVKQWVPRESS------API--THATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       964 ~iwd~~~~~~~~~~~~~~h~------~~v--~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .-.|..+|+.+-......+.      .+.  ..+..  .+.+|+.++.||.|+.+|..+|+.+-+.+
T Consensus       369 ~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         369 AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            78888888876655432111      111  12222  56788889999999999999999998877

The alignment model contains an 8-bladed beta-propeller.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.05  E-value=0.0024  Score=74.58  Aligned_cols=211  Identities=12%  Similarity=0.078  Sum_probs=115.5

Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeec---cccCEE--EEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA---HVGGVN--DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  494 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~---h~~~V~--~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~  494 (1102)
                      +..+..++.++.|.-.|..+|+.+-....-..   +...+.  .++.. ++.  .++.++.++.|.-+|.++|+.+..+.
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~--~V~v~~~~g~v~AlD~~TG~~~W~~~  137 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPR--KVFFGTFDGRLVALDAETGKQVWKFG  137 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCC--eEEEecCCCeEEEEECCCCCEeeeec
Confidence            55666777889999999999886543211000   000110  11221 213  47778889999999999999998775


Q ss_pred             cCCCC-----eEE-EeeeecCCccEEEEEe---------CCCeEEEEEcCCCCCeeeecCCCCeeeEEE-EccCCceeee
Q 001311          495 GHEAP-----VYS-VCPHHKENIQFIFSTA---------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMA-YSADGTRTYQ  558 (1102)
Q Consensus       495 ~h~~~-----v~~-v~~~~~~~~~~l~s~s---------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~-~s~~~~~~~~  558 (1102)
                      .....     +.+ ..+  ..  .+++.++         .++.|..+|..+++.+..+........... +.... ... 
T Consensus       138 ~~~~~~~~~~i~ssP~v--~~--~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~-~~~-  211 (488)
T cd00216         138 NNDQVPPGYTMTGAPTI--VK--KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDR-QMW-  211 (488)
T ss_pred             CCCCcCcceEecCCCEE--EC--CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCc-cee-
Confidence            43221     111 111  11  3455553         367899999999888776654321110000 00000 000 


Q ss_pred             ccccCce-eEEEEcCCCCEEEEEeCCC------------------eEEEEECCCcceEEEEcCCCCCC----CcCeEEEc
Q 001311          559 GFRKRSL-GVVQFDTTKNRFLAAGDDF------------------SIKFWDMDSVQLLTSIDADGGLP----ASPRIRFN  615 (1102)
Q Consensus       559 ~~~~~~i-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~~~~s  615 (1102)
                      +.....+ ...++++.+..++.++.++                  .|.-+|+.+|+.+..++...+..    ......+.
T Consensus       212 ~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~  291 (488)
T cd00216         212 GPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLA  291 (488)
T ss_pred             cCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEE
Confidence            0111111 1244555556677776554                  79999999999888875322110    00111111


Q ss_pred             ----CCCC---EEEEEECCCcEEEEEccCCc
Q 001311          616 ----KDGC---LLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       616 ----~~~~---~l~~~~~dg~i~iwd~~~~~  639 (1102)
                          -++.   .+++++.+|.+...|..+++
T Consensus       292 ~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~  322 (488)
T cd00216         292 DIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK  322 (488)
T ss_pred             eccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence                1333   57778888888888888883

The alignment model contains an 8-bladed beta-propeller.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.05  E-value=0.00085  Score=74.54  Aligned_cols=280  Identities=12%  Similarity=0.171  Sum_probs=141.8

Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeeccccccCC-CCccc-----------ccccceeccC--------CCcccccccc
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNS-SGKAT-----------ASVAPQLWQP--------PSGIMMTNDV  800 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~-----------~~~~~~~w~~--------~~~~~~~~~~  800 (1102)
                      .|+.+.|+++..-|+++...|.+.+|.+....... .....           ....-.+-|+        ..|.+....+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            57899999998889999999999999987764432 00000           0001112221        1232222222


Q ss_pred             CCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee--ecC------CCCCeeEEEEec----CCC---cEEE
Q 001311          801 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FMP------PPPAATFLAFHP----QDN---NIIA  864 (1102)
Q Consensus       801 ~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~--~~~------~~~~i~~l~~sp----~d~---~~la  864 (1102)
                      ..  ..++|++++.| |=-++|+|. +|.+.|.|++....+..  +..      ....|+++.|+-    +|+   -.|+
T Consensus        83 ~~--~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DA--KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             ec--cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            22  47889999997 445999999 89999999988777655  222      234588888872    133   4788


Q ss_pred             EEeCCCcEEEEEeec---ceeeeeec----cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceee--ee-cCC
Q 001311          865 IGMDDSSIQIYNVRV---DEVKSKLK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF--LQ-IPT  934 (1102)
Q Consensus       865 sg~~dg~v~vwd~~~---~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~--~~-~~~  934 (1102)
                      +|+..|.+.+|.+.-   +.....+.    .+.++|..|                  ...+.++++......  ++ ...
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I------------------~~i~~~~G~~a~At~~~~~~l~~  221 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSI------------------IPINADTGESALATISAMQGLSK  221 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EE------------------EEEETTT--B-B-BHHHHHGGGG
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEE------------------EEEECCCCCcccCchhHhhcccc
Confidence            899999999998752   11111111    122222222                  222333333211110  00 000


Q ss_pred             CCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEc-----CCCcEEEEEeCCCeEEE
Q 001311          935 GRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFS-----CDSQLVYACFLDATVCV 1009 (1102)
Q Consensus       935 ~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-----pd~~~l~s~s~Dg~I~v 1009 (1102)
                      +.             ....+++++.+..++++...+.+......  ...-....+++-     ..+..|++-..||.|++
T Consensus       222 g~-------------~i~g~vVvvSe~~irv~~~~~~k~~~K~~--~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i  286 (395)
T PF08596_consen  222 GI-------------SIPGYVVVVSESDIRVFKPPKSKGAHKSF--DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRI  286 (395)
T ss_dssp             T-----------------EEEEEE-SSEEEEE-TT---EEEEE---SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEE
T ss_pred             CC-------------CcCcEEEEEcccceEEEeCCCCcccceee--ccccccceEEEEeecccCCceEEEEEECCCcEEE
Confidence            00             01235666789999999998887765544  112233344452     35677889999999999


Q ss_pred             EEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEe
Q 001311         1010 FSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus      1010 wd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
                      |.+...+.+..+.......    .....  ..++++ +|+.++-.+ ...+.++.
T Consensus       287 ~SLP~Lkei~~~~l~~~~d----~~~~~--~ssis~-~Gdi~~~~g-psE~~l~s  333 (395)
T PF08596_consen  287 YSLPSLKEIKSVSLPPPLD----SRRLS--SSSISR-NGDIFYWTG-PSEIQLFS  333 (395)
T ss_dssp             EETTT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE-S-SSEEEEEE
T ss_pred             EECCCchHhhcccCCCccc----ccccc--ccEECC-CCCEEEEeC-cccEEEEE
Confidence            9999999998887321111    11122  455666 577666554 33434333

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.04  E-value=0.00043  Score=77.58  Aligned_cols=157  Identities=12%  Similarity=0.127  Sum_probs=90.1

Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      ..+....++++..++++++..|.|.++.++. ...++..                .+.  .....|...|++++|++|+.
T Consensus        77 ~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~-~~p~~~~----------------~~t--~~d~~~~~rVTal~Ws~~~~  137 (726)
T KOG3621|consen   77 GITCVRSVSSVEYLVAAGTASGRVSVFQLNK-ELPRDLD----------------YVT--PCDKSHKCRVTALEWSKNGM  137 (726)
T ss_pred             ceEEEEEecchhHhhhhhcCCceEEeehhhc-cCCCcce----------------eec--cccccCCceEEEEEeccccc
Confidence            4455667788888788888888888887643 1111111                111  11122788999999999999


Q ss_pred             eEEEEe-CCeEEEEEcCCCc----eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc-ccc-c
Q 001311          820 YVMSAS-GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG-HSK-R  892 (1102)
Q Consensus       820 ~las~s-dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~-h~~-~  892 (1102)
                      .+.+|. .|+|..-.+.+..    ..+.+....+.|..+.+..  +.+|++...-  -.+++.+.++..+.=+. ..+ .
T Consensus       138 k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVStl~r--~~Lc~tE~eti~QIG~k~R~~~~  213 (726)
T KOG3621|consen  138 KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVSTLTR--CILCQTEAETITQIGKKPRKSLI  213 (726)
T ss_pred             EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHhhhhh--hheeecchhHHHHhcCCCcCCcc
Confidence            999998 6998888877621    1233334567788887763  5555543322  23444443321111111 111 1


Q ss_pred             ceeEEEecC----CCEEEEEcCCCcEEEEEcC
Q 001311          893 ITGLAFSHA----LNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       893 V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      -.+.+|-|.    .+-.+.++.=| .|+|..+
T Consensus       214 ~~GACF~~g~~~~q~~~IycaRPG-~RlWead  244 (726)
T KOG3621|consen  214 DFGACFFPGQCKAQKPQIYCARPG-LRLWEAD  244 (726)
T ss_pred             ccceEEeeccccCCCceEEEecCC-CceEEee
Confidence            234555544    34455555555 7888765

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.00  E-value=0.0012  Score=73.67  Aligned_cols=286  Identities=15%  Similarity=0.136  Sum_probs=149.8

Q ss_pred             CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCC
Q 001311          583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  662 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (1102)
                      .+.+.+||+.+++.......   ...+....|+|+|+.++... ++.|.+++..++.....+..+ ...           
T Consensus        22 ~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg-~~~-----------   85 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDG-EPG-----------   85 (353)
T ss_dssp             EEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTT-----------
T ss_pred             ceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecccc-cee-----------
Confidence            56799999998765444332   23578899999999999886 578999987776222111111 000           


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccce
Q 001311          663 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  742 (1102)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i  742 (1102)
                                                                +..|-.|     |-.++               .--+.-
T Consensus        86 ------------------------------------------i~nG~~d-----wvyeE---------------Ev~~~~  103 (353)
T PF00930_consen   86 ------------------------------------------IYNGVPD-----WVYEE---------------EVFDRR  103 (353)
T ss_dssp             ------------------------------------------EEESB-------HHHHH---------------HTSSSS
T ss_pred             ------------------------------------------EEcCccc-----eeccc---------------cccccc
Confidence                                                      0000000     00000               000112


Q ss_pred             EEEEEccCCceEEEeecC-ceEEeeeccccc-------------cCCCCcccccccceeccCCCccccccccC--CCCCC
Q 001311          743 SRLIFTNSGNAILALASN-AIHLLWKWQRTE-------------RNSSGKATASVAPQLWQPPSGIMMTNDVT--DSNPE  806 (1102)
Q Consensus       743 ~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~-------------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~--~~~~~  806 (1102)
                      ..+.|||||++|+....| ..+..+.+..-.             ....|.......+.++++.++........  .....
T Consensus       104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~  183 (353)
T PF00930_consen  104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD  183 (353)
T ss_dssp             BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred             cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence            356788888877776654 444443332111             11223333444566788877765432222  01235


Q ss_pred             CCeeEEEEecCCCeEEEE-eC-----CeEEEEEcCCCceeeeecC-CC---CCeeEEEEe-cCCCcEEEEEeCCCcEEEE
Q 001311          807 EAVPCFALSKNDSYVMSA-SG-----GKISLFNMMTFKTMATFMP-PP---PAATFLAFH-PQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~-sd-----g~I~iwd~~~~~~~~~~~~-~~---~~i~~l~~s-p~d~~~lasg~~dg~v~vw  875 (1102)
                      ..+..+.|.++++.|+.. .+     ..+.+.|..++.+...... ..   ..-....|. ++++.+|.....||.-+||
T Consensus       184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly  263 (353)
T PF00930_consen  184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLY  263 (353)
T ss_dssp             EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEE
T ss_pred             cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEE
Confidence            568899999999944443 22     2377778877655433221 11   223456665 6466777777788865555


Q ss_pred             Eee--cceeeeeecccccccee-EEEecCCCEEE-EEcCCC----cEEEEEcC-CCcccceeeeecCCCCCCCCCCC-cE
Q 001311          876 NVR--VDEVKSKLKGHSKRITG-LAFSHALNVLV-SSGADS----QLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSD-TR  945 (1102)
Q Consensus       876 d~~--~~~~~~~l~~h~~~V~~-l~~s~d~~~l~-s~s~Dg----~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v-~~  945 (1102)
                      -+.  .+. ...+....-.|+. +.++++++.|. ++..+.    .|..-+++ +++.   .++....       .. ..
T Consensus       264 ~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT~~~-------~~~~~  332 (353)
T PF00930_consen  264 LYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLTCED-------GDHYS  332 (353)
T ss_dssp             EEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESSTTS-------STTEE
T ss_pred             EEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---EeccCCC-------CCceE
Confidence            544  444 4456555566755 67788876654 555432    34444555 3221   2222211       22 48


Q ss_pred             EEEccCCcEEEE
Q 001311          946 VQFHQDQIHFLV  957 (1102)
Q Consensus       946 ~~~spdg~~l~~  957 (1102)
                      +.|||+|++++.
T Consensus       333 ~~~Spdg~y~v~  344 (353)
T PF00930_consen  333 ASFSPDGKYYVD  344 (353)
T ss_dssp             EEE-TTSSEEEE
T ss_pred             EEECCCCCEEEE
Confidence            999999999987

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.94  E-value=0.002  Score=71.59  Aligned_cols=268  Identities=14%  Similarity=0.196  Sum_probs=139.0

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEE------ee------------eeeeeccCCCCcc------ccccc
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLV------LR------------NFKVWDLGACSMP------LQAAL  403 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~------~~------------~~~~~~~~~~~~~------~~~~~  403 (1102)
                      .|++|.|+++..- |++|...|.|.||.+...+.-.      ..            .-++.|+..+..+      .+..+
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5899999999775 9999999999999986543322      00            1123344332222      12234


Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeec------cccCEEEEEEc-----CCC-CeeEEE
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDA------HVGGVNDIAFS-----HPN-KQLCVI  471 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~------h~~~V~~v~~s-----~d~-~~~~l~  471 (1102)
                      +....++|++++.| |=.++|+|+.+|.+.|.|+++...+.. ..+..      ....|+++.|+     .|+ ..++++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            55668999999997 667999999999999999987765533 22333      23468888886     222 224788


Q ss_pred             EecCCCcEEEEeCC-C--Ceee----EEeecCCCCeEEEeeeecCCc-------------------cEEEEEeCCCeEEE
Q 001311          472 TCGDDKTIKVWDAT-N--GAKQ----YIFEGHEAPVYSVCPHHKENI-------------------QFIFSTALDGKIKA  525 (1102)
Q Consensus       472 s~~~d~~i~vWd~~-~--~~~~----~~~~~h~~~v~~v~~~~~~~~-------------------~~l~s~s~dg~i~~  525 (1102)
                      .|...|.+.+|.+. .  +...    .....+.++|..++.-...+|                   +-++....+..+|+
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            88899999999775 1  2211    122246677766653211110                   11333344678888


Q ss_pred             EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC-
Q 001311          526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-  604 (1102)
Q Consensus       526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-  604 (1102)
                      +...+.+..............+.+.+-.               . ...+..|++-..+|.|++|.+..-+.+..+.... 
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~---------------~-~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~  303 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTI---------------S-RNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP  303 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-----------------EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS-
T ss_pred             EeCCCCcccceeeccccccceEEEEeec---------------c-cCCceEEEEEECCCcEEEEECCCchHhhcccCCCc
Confidence            8777655443322111111122221000               0 1123457888899999999999998888776532 


Q ss_pred             -CCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          605 -GLPASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       605 -~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                       ....+...+++++|..++-.+. ..+.++.+
T Consensus       304 ~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv  334 (395)
T PF08596_consen  304 LDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV  334 (395)
T ss_dssp             --HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred             cccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence             1123456778888886665543 34444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=0.00038  Score=79.06  Aligned_cols=185  Identities=14%  Similarity=0.193  Sum_probs=126.9

Q ss_pred             CCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          806 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      ...++|++++  +++++-|. +|.|++++.... . .+...|...      .- +|.++++|+.||+|.|-.+.+.+...
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~-~Gey~asCS~DGkv~I~sl~~~~~~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------IL-EGEYVASCSDDGKVVIGSLFTDDEIT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCc-c-ccccccccc------cc-CCceEEEecCCCcEEEeeccCCccce
Confidence            3446666654  56899998 899999997643 2 333334433      34 89999999999999999998887766


Q ss_pred             eeccccccceeEEEecC-----CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe
Q 001311          885 KLKGHSKRITGLAFSHA-----LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH  959 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d-----~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~  959 (1102)
                      ++. ...++.+|+++||     .+.+++||.-| +.++.-.=-.......+..      ..++|.++.|  .|.++|-+.
T Consensus       108 ~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~------~eG~I~~i~W--~g~lIAWan  177 (846)
T KOG2066|consen  108 QYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSE------GEGPIHSIKW--RGNLIAWAN  177 (846)
T ss_pred             eEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeec------CccceEEEEe--cCcEEEEec
Confidence            655 4567999999998     57899999988 7766422111101111221      2257788877  567888899


Q ss_pred             CCeEEEEEcCCceEeeeeccCCC----CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311          960 ETQLAIFETTKLECVKQWVPRES----SAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus       960 d~~i~iwd~~~~~~~~~~~~~~h----~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
                      |-.|++||+.+++.+..+.....    ..-...+.|.++.++++ | .--+|+|..+.
T Consensus       178 d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK  233 (846)
T ss_pred             CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence            99999999999998877654221    12234678887765443 4 45578888776

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.91  E-value=0.0074  Score=64.96  Aligned_cols=288  Identities=15%  Similarity=0.101  Sum_probs=137.3

Q ss_pred             EEEEccCCceEEEeec-CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311          744 RLIFTNSGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  822 (1102)
Q Consensus       744 ~~~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la  822 (1102)
                      .=+|.+||+.|+.++. +|.-.+|-+                    |+.+++....  +.. .........++++++.++
T Consensus        40 ~~~ft~dG~kllF~s~~dg~~nly~l--------------------DL~t~~i~QL--Tdg-~g~~~~g~~~s~~~~~~~   96 (386)
T PF14583_consen   40 QNCFTDDGRKLLFASDFDGNRNLYLL--------------------DLATGEITQL--TDG-PGDNTFGGFLSPDDRALY   96 (386)
T ss_dssp             S--B-TTS-EEEEEE-TTSS-EEEEE--------------------ETTT-EEEE-----S-S-B-TTT-EE-TTSSEEE
T ss_pred             CCCcCCCCCEEEEEeccCCCcceEEE--------------------EcccCEEEEC--ccC-CCCCccceEEecCCCeEE
Confidence            3467889987776665 555555543                    4455554332  111 111222466778888877


Q ss_pred             EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe-cCCCcEEEEEeC----------------------CCcEEEEEee
Q 001311          823 SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH-PQDNNIIAIGMD----------------------DSSIQIYNVR  878 (1102)
Q Consensus       823 s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s-p~d~~~lasg~~----------------------dg~v~vwd~~  878 (1102)
                      ... +..|+-.|+.+.+....+......+....|. ..|+..++-.-.                      ...|..-|+.
T Consensus        97 Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~  176 (386)
T PF14583_consen   97 YVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK  176 (386)
T ss_dssp             EEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred             EEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence            665 5789999999987665555555555445554 225555543211                      1245555666


Q ss_pred             cceeeeeeccccccceeEEEecCCCEEEEEcC----CCc-EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311          879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGA----DSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  953 (1102)
Q Consensus       879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~----Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  953 (1102)
                      +|+....+. -..-+..+.|||....++.=+.    |.. -|||-+.+.......+.+    +. ....+..=-|.|||.
T Consensus       177 tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~----~~-~~e~~gHEfw~~DG~  250 (386)
T PF14583_consen  177 TGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR----RM-EGESVGHEFWVPDGS  250 (386)
T ss_dssp             T--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS--------TTEEEEEEEE-TTSS
T ss_pred             CCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec----CC-CCcccccccccCCCC
Confidence            666444433 3445677899997666555433    332 367766543221111111    11 113456678999999


Q ss_pred             EEEE-Ee-----CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC----------------eEEEEE
Q 001311          954 HFLV-VH-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------------TVCVFS 1011 (1102)
Q Consensus       954 ~l~~-~~-----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg----------------~I~vwd 1011 (1102)
                      .|.. +.     +..|.-+|..+++......    ......+..++||++++-=+.|.                -|++++
T Consensus       251 ~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~----~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~  326 (386)
T PF14583_consen  251 TIWYDSYTPGGQDFWIAGYDPDTGERRRLME----MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFD  326 (386)
T ss_dssp             -EEEEEEETTT--EEEEEE-TTT--EEEEEE----E-SEEEEEE-TTSSEEEEEE-------------------EEEEEE
T ss_pred             EEEEEeecCCCCceEEEeeCCCCCCceEEEe----CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEec
Confidence            8876 32     3367788888887644322    22455667789999887444332                567788


Q ss_pred             cCCceeEEEeCC-Ccc-cCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311         1012 AANLKLRCRINP-SAY-LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1012 ~~~~~~~~~~~~-~~~-~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      +..+........ ..+ .-.|+ .. +.---..|+|++...|.+....|...|+-++
T Consensus       327 ~~~~~~~~l~~h~~sw~v~~~~-~q-~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~  381 (386)
T PF14583_consen  327 VEAGRFRKLARHDTSWKVLDGD-RQ-VTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE  381 (386)
T ss_dssp             TTTTEEEEEEE-------BTTB-SS-TT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred             cccCceeeeeeccCcceeecCC-Cc-cCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence            888765432221 001 11110 11 1112489999654456677777877777654

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.88  E-value=0.06  Score=63.08  Aligned_cols=111  Identities=11%  Similarity=0.021  Sum_probs=65.9

Q ss_pred             EEEEecCCCcEEEEeCCCCeeeEEeecCC-CCeEE----------EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee
Q 001311          469 CVITCGDDKTIKVWDATNGAKQYIFEGHE-APVYS----------VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY  537 (1102)
Q Consensus       469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~-~~v~~----------v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~  537 (1102)
                      .++.++.++.|.-.|..+|+.+..+.... ..+..          +.+  .  +..++.++.|+.|...|..+++.+...
T Consensus        71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~--~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--Y--DGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--E--CCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            36666777889999999999887765321 11111          111  1  236778888999999999988877655


Q ss_pred             cCCCCee-eEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe------CCCeEEEEECCCcceEEEEcC
Q 001311          538 EAPGRWC-TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG------DDFSIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       538 ~~~~~~v-~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~  602 (1102)
                      ....... ..+.-+|                 .+. + ..++.+.      .+|.|+.+|.++|+.+..+..
T Consensus       147 ~~~~~~~~~~~tssP-----------------~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       147 KNGDYKAGYTITAAP-----------------LVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             ccccccccccccCCc-----------------EEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence            4321100 0000000                 000 1 2344433      368999999999998877653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.87  E-value=0.12  Score=61.11  Aligned_cols=468  Identities=10%  Similarity=0.074  Sum_probs=234.9

Q ss_pred             cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee--cCCCCeEEEeeeecCCcc----EEEEEeCCCeEEEEE
Q 001311          454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEAPVYSVCPHHKENIQ----FIFSTALDGKIKAWL  527 (1102)
Q Consensus       454 ~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~--~h~~~v~~v~~~~~~~~~----~l~s~s~dg~i~~wd  527 (1102)
                      +.++..+.+.+..+  ++.++.++.+...++..+. ++...  .....|.|+.+++.++++    +++.|.-+..+    
T Consensus       488 ~~~ti~~~~~n~sq--VvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~----  560 (1096)
T KOG1897|consen  488 GKITIGVVSANASQ--VVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDIS----  560 (1096)
T ss_pred             CceEEEEEeecceE--EEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceE----
Confidence            34455455555553  5555556777777777666 32222  234568888777655443    45555433322    


Q ss_pred             cCCCCCeeeecCCCCeeeEEEEccCCceeeecc-----ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC--cceEEEE
Q 001311          528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF-----RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS--VQLLTSI  600 (1102)
Q Consensus       528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~  600 (1102)
                                       .-+.+.||...+....     -...+-...+-.+..+|+++..||.+.-|.+..  +..-..-
T Consensus       561 -----------------~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~K  623 (1096)
T KOG1897|consen  561 -----------------MILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRK  623 (1096)
T ss_pred             -----------------EEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccc
Confidence                             2233333332111110     012333445555678999999999998776554  3332222


Q ss_pred             cCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311          601 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  680 (1102)
Q Consensus       601 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1102)
                      +.+-++.++.--.|+..++.-+.+.+|.-..+|..+.. -.+..+.-..-.       ....|+..+             
T Consensus       624 k~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k-Lv~spls~kev~-------~~c~f~s~a-------------  682 (1096)
T KOG1897|consen  624 KVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGK-LVYSPLSLKEVN-------HMCPFNSDA-------------  682 (1096)
T ss_pred             ccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCc-EEEeccchHHhh-------hhccccccc-------------
Confidence            22333344544556665555444555666666653322 122111100000       000111100             


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311          681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  760 (1102)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d  760 (1102)
                                          ....++ ....+.+++..++....... +++  |   -......+++.+....+.+.+.-
T Consensus       683 --------------------~~d~l~-~~~~~~l~i~tid~iqkl~i-rtv--p---l~~~prrI~~q~~sl~~~v~s~r  735 (1096)
T KOG1897|consen  683 --------------------YPDSLA-SANGGALTIGTIDEIQKLHI-RTV--P---LGESPRRICYQESSLTFGVLSNR  735 (1096)
T ss_pred             --------------------CCceEE-EecCCceEEEEecchhhcce-eee--c---CCCChhheEecccceEEEEEecc
Confidence                                111222 22335566666554332211 111  1   12344556666644333333322


Q ss_pred             ceEEeeeccccccCCCCcccccccceeccCCCccccccc-cCCCCCCCCeeEEEEecC-CCeEEEEe-----------CC
Q 001311          761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKN-DSYVMSAS-----------GG  827 (1102)
Q Consensus       761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~i~~l~~s~d-~~~las~s-----------dg  827 (1102)
                      .....=       . .+.......++++|.++-+..... +........+.++.|..| +.++++|.           .|
T Consensus       736 ~e~~~~-------~-~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~G  807 (1096)
T KOG1897|consen  736 IESSAE-------Y-YGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNG  807 (1096)
T ss_pred             cccchh-------h-cCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccc
Confidence            111000       0 011111112345555554433321 111001122344447766 77887773           26


Q ss_pred             eEEEEEcCCCceeeeecCC--CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEE
Q 001311          828 KISLFNMMTFKTMATFMPP--PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL  905 (1102)
Q Consensus       828 ~I~iwd~~~~~~~~~~~~~--~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l  905 (1102)
                      .|.+|.+...+.+.....+  .+.+.++..-  +|++||.  -+..|++|+..+.+.++.-..|...+..+...-.|..+
T Consensus       808 RIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI  883 (1096)
T KOG1897|consen  808 RIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEI  883 (1096)
T ss_pred             eEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEE
Confidence            7888888774444443322  3445555443  5777763  56789999999987777777788999999999999999


Q ss_pred             EEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce----------Eee
Q 001311          906 VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE----------CVK  975 (1102)
Q Consensus       906 ~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~----------~~~  975 (1102)
                      +.|+--+.+.+--.+..+-.......-..  .   ...+++.+-.+..++.+-.+|.+.+...++..          .+.
T Consensus       884 ~VgDlm~Sitll~y~~~eg~f~evArD~~--p---~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~  958 (1096)
T KOG1897|consen  884 AVGDLMRSITLLQYKGDEGNFEEVARDYN--P---NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVG  958 (1096)
T ss_pred             EEeeccceEEEEEEeccCCceEEeehhhC--c---cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhccccee
Confidence            99998887776665543321112221111  1   35677778788888777666766665443210          111


Q ss_pred             eeccC------CCCCCeeEE--EEcCCCcEEEEEeCCCeEEEE
Q 001311          976 QWVPR------ESSAPITHA--TFSCDSQLVYACFLDATVCVF 1010 (1102)
Q Consensus       976 ~~~~~------~h~~~v~~l--~~spd~~~l~s~s~Dg~I~vw 1010 (1102)
                      .|..+      .|..-|.++  ..+|-+..+..|..+|.|-+-
T Consensus       959 ~~hlGelvn~f~hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen  959 KFHLGELVNKFRHGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred             eEEeccceeeeeecceEeeccccccCCCCcEEEEEccceEEEE
Confidence            11110      133334331  234445557788888887654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.87  E-value=5.1e-06  Score=90.95  Aligned_cols=204  Identities=15%  Similarity=0.244  Sum_probs=129.1

Q ss_pred             CCCCeeEEEEecCCC-eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCe
Q 001311          345 QGSSPMSMDFHPVQQ-TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSL  422 (1102)
Q Consensus       345 h~~~v~~v~~spdg~-~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~  422 (1102)
                      ....+.|++++-+.+ .|++.|..+|.|-+-.+......                 ...+..+|....++++|++ |...
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~  117 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNH  117 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHH
Confidence            456778888776544 68999999999999887653222                 1114678889999999999 8888


Q ss_pred             EEEEE----CCCeEEEEEccCCce--eeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEee
Q 001311          423 FGVAY----SRHIVQIYSYHGGDE--VRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE  494 (1102)
Q Consensus       423 las~~----~d~~v~vwd~~~~~~--~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~  494 (1102)
                      ||+|-    .|..+.|||+.++-.  .... .+. +-.....+++|..|.+  ++++|...+.+.++|++... ....+ 
T Consensus       118 LAagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv-  193 (783)
T KOG1008|consen  118 LAAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV-  193 (783)
T ss_pred             HHhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh-
Confidence            88873    467899999988621  1111 122 2445677899998888  78899888999999987322 11222 


Q ss_pred             cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE-cCCCCCeeeecCC-----CCeeeEEEEccCCceeeeccccCceeEE
Q 001311          495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL-YDNLGSRVDYEAP-----GRWCTTMAYSADGTRTYQGFRKRSLGVV  568 (1102)
Q Consensus       495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd-~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~~~~~~~~~~i~~~  568 (1102)
                       .+..+..+.+.+- .+.++++-. ||.|-+|| ...-+.......+     ...+..++|.|...              
T Consensus       194 -nTk~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------  256 (783)
T KOG1008|consen  194 -NTKYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------  256 (783)
T ss_pred             -hhhhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------
Confidence             2223444444331 335776666 89999999 4433332221111     11355555555432              


Q ss_pred             EEcCCCCEEEEEe-CCCeEEEEECC
Q 001311          569 QFDTTKNRFLAAG-DDFSIKFWDMD  592 (1102)
Q Consensus       569 ~~~~~~~~l~~~~-~dg~i~iwd~~  592 (1102)
                            ..+++.. ..++|+.+|+.
T Consensus       257 ------glla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  257 ------GLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             ------chhhhhccCcceEEEeccc
Confidence                  2244433 56788888875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.85  E-value=0.0021  Score=72.42  Aligned_cols=221  Identities=10%  Similarity=0.097  Sum_probs=116.5

Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      .....+.++|+|+.+++ +.+|...++....                      .+.        ...+.....+|.+.++
T Consensus        33 ~~p~~ls~npngr~v~V-~g~geY~iyt~~~----------------------~r~--------k~~G~g~~~vw~~~n~   81 (443)
T PF04053_consen   33 IYPQSLSHNPNGRFVLV-CGDGEYEIYTALA----------------------WRN--------KAFGSGLSFVWSSRNR   81 (443)
T ss_dssp             S--SEEEE-TTSSEEEE-EETTEEEEEETTT----------------------TEE--------EEEEE-SEEEE-TSSE
T ss_pred             cCCeeEEECCCCCEEEE-EcCCEEEEEEccC----------------------Ccc--------cccCceeEEEEecCcc
Confidence            34678999999997777 6667777765210                      000        0223456788888666


Q ss_pred             eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEe
Q 001311          820 YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS  899 (1102)
Q Consensus       820 ~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s  899 (1102)
                      +.+.-..++|.|+.--+....+.+... ..+..+-.    |.+|...+.+ .|.+||..+++.++++...  .|..|.|+
T Consensus        82 yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws  153 (443)
T PF04053_consen   82 YAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWS  153 (443)
T ss_dssp             EEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-
T ss_pred             EEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEE
Confidence            544444788999643232332333321 12333322    6777776644 8999999999999998743  38999999


Q ss_pred             cCCCEEEEEcCCCcEEEEEcCCC---------cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001311          900 HALNVLVSSGADSQLCVWSSDGW---------EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  970 (1102)
Q Consensus       900 ~d~~~l~s~s~Dg~i~vwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~  970 (1102)
                      ++|.+++..+.+ .+.|++.+..         -......+....      ..|.+.+|..| .++.+... +++.  +-.
T Consensus       154 ~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d-~fiYtT~~-~lkY--l~~  222 (443)
T PF04053_consen  154 DDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED-CFIYTTSN-HLKY--LVN  222 (443)
T ss_dssp             TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEEE-TT-EEEE--EET
T ss_pred             CCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC-EEEEEcCC-eEEE--EEc
Confidence            999999999866 5888776542         000111111111      36788899888 44444333 6666  333


Q ss_pred             ceE--eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311          971 LEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       971 ~~~--~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      |+.  +..+     ..++.=+.+.+....+.....|+.|..+.++..
T Consensus       223 Ge~~~i~~l-----d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  223 GETGIIAHL-----DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             TEEEEEEE------SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             CCcceEEEc-----CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            332  2222     456777778887778888888888888876643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.81  E-value=0.0039  Score=64.10  Aligned_cols=218  Identities=11%  Similarity=0.105  Sum_probs=117.5

Q ss_pred             eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc-cccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          841 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       841 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      +.+.+-...+..++|.|+++.++++....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.++++
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~   93 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI   93 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence            3455566679999999966778888989999988886 47777765322 245678999888888887777999999998


Q ss_pred             CCCcc--cceeeeecCCCC-CCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC---ceEeee-----ec-cCCCCCCe
Q 001311          920 DGWEK--QKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---LECVKQ-----WV-PRESSAPI  986 (1102)
Q Consensus       920 ~~~~~--~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~---~~~~~~-----~~-~~~h~~~v  986 (1102)
                      .....  .........-+. .........++|++.++.|.++ ...-..+|.+..   ...+..     +. .......+
T Consensus        94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  173 (248)
T PF06977_consen   94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL  173 (248)
T ss_dssp             ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred             eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence            44221  111111111111 1122467899999987777776 444455665543   111111     11 11235678


Q ss_pred             eEEEEcCC-CcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEE
Q 001311          987 THATFSCD-SQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1063 (1102)
Q Consensus       987 ~~l~~spd-~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW 1063 (1102)
                      .++++.|. |.+++.......|.++| .+|+.+..+......+ |-...--.+=+|+|.+ +|++.++ +.-+..+++
T Consensus       174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred             cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence            99999985 55677777888999999 7888877766332111 0001112344899998 5665555 455554444

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.79  E-value=0.0003  Score=77.87  Aligned_cols=130  Identities=11%  Similarity=0.097  Sum_probs=90.2

Q ss_pred             cceeeccCCCCeeEEEEecCCCeEEEEE----ecCCe----EEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCC
Q 001311          338 TVTRTLNQGSSPMSMDFHPVQQTLLLVG----TNVGD----IGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV  409 (1102)
Q Consensus       338 ~~~~~~~h~~~v~~v~~spdg~~llasg----~~d~~----i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  409 (1102)
                      ++.....-.....++.||-...+.+.|-    +.+|.    -.+|++..++... ..+               +-.....
T Consensus       197 EvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqr-vsv---------------tsipL~s  260 (545)
T PF11768_consen  197 EVLSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQR-VSV---------------TSIPLPS  260 (545)
T ss_pred             EEEEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeE-EEE---------------EEEecCC
Confidence            3344444456678888887554444442    22342    4566665443221 111               2335677


Q ss_pred             CeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee
Q 001311          410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  489 (1102)
Q Consensus       410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~  489 (1102)
                      .|.|++++|+.+.|+.|+.||+|++||...+...     +..+.-..+.++|+|+|.  +++.|+..|.+.+||+.-...
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~-----~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALspi  333 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTL-----LAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSPI  333 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeee-----eeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCcc
Confidence            9999999999999999999999999999876422     223445688999999999  899999999999999875544


Q ss_pred             e
Q 001311          490 Q  490 (1102)
Q Consensus       490 ~  490 (1102)
                      .
T Consensus       334 ~  334 (545)
T PF11768_consen  334 K  334 (545)
T ss_pred             c
Confidence            3

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.78  E-value=0.013  Score=66.35  Aligned_cols=199  Identities=15%  Similarity=0.133  Sum_probs=107.8

Q ss_pred             EEEecCCCeEEEEeCC------------eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          812 FALSKNDSYVMSASGG------------KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       812 l~~s~d~~~las~sdg------------~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      ++.+|.|-.+|...|.            .|+||+.. |+.+..+.-..+.|.++.|+. +.. |++-..||.+++||+..
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G  110 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG  110 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence            4555666666655533            59999875 456665543448899999997 554 44567899999999863


Q ss_pred             ce------eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeee-ecCCCCCC--CCCCCcE-EEEc
Q 001311          880 DE------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTP--TAQSDTR-VQFH  949 (1102)
Q Consensus       880 ~~------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~--~~~~v~~-~~~s  949 (1102)
                      ..      .+....-....+....+..+|  +|.-..++.+.+-+--.... ..+.. ..+.....  ....... ..++
T Consensus       111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~-~~~~~~~~p~~~~~~~~~~~~~~i~~l~  187 (410)
T PF04841_consen  111 EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPV-KLRRLPEIPGLWTKFHWWPSWTVIPLLS  187 (410)
T ss_pred             ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccc-hhhccccCCCcccccccccccccceEee
Confidence            22      111111122233333444455  33333444444332211110 10111 11110000  0001111 2344


Q ss_pred             cCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          950 QDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       950 pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .+....+. ..++.+.+.+....+.   +   ...+++..+++||+|++||.-..+|.+.|...+-.+....+.
T Consensus       188 ~~~~~~i~~~~g~~i~~i~~~~~~~---i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  188 SDRVVEILLANGETIYIIDENSFKQ---I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             cCcceEEEEecCCEEEEEEcccccc---c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            45444444 4445555444332211   1   124689999999999999999999999999877777776666

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.77  E-value=0.019  Score=59.13  Aligned_cols=162  Identities=8%  Similarity=0.110  Sum_probs=96.0

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      -...+..++|+|+.+.|+++....+.|...+.. |+.+....                 +.+ -+..-.|++..++.+++
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~-----------------l~g-~~D~EgI~y~g~~~~vl   80 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP-----------------LDG-FGDYEGITYLGNGRYVL   80 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE------------------SS--SSEEEEEE-STTEEEE
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe-----------------CCC-CCCceeEEEECCCEEEE
Confidence            445699999999988889999999999999974 77766432                 223 34678899988888877


Q ss_pred             EEECCCeEEEEEccCCce---eee--EEEee---ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC---CeeeEEe
Q 001311          425 VAYSRHIVQIYSYHGGDE---VRQ--HLEID---AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---GAKQYIF  493 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~---~~~--~~~l~---~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~---~~~~~~~  493 (1102)
                      +--.++.+.++++.....   ...  ...+.   .+...+-.++|.+.++.  |+.+-...-..++.+..   +..+...
T Consensus        81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~~~~~~  158 (248)
T PF06977_consen   81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGFDLFVS  158 (248)
T ss_dssp             EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS--EEE
T ss_pred             EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCccceeec
Confidence            776789999999843221   111  11111   34567999999999885  44445555556665543   2222111


Q ss_pred             --------ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEc
Q 001311          494 --------EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  528 (1102)
Q Consensus       494 --------~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~  528 (1102)
                              ......+.++.+++. .+++++....+..|..+|.
T Consensus       159 ~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d~  200 (248)
T PF06977_consen  159 DDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELDR  200 (248)
T ss_dssp             E-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE-T
T ss_pred             cccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEECC
Confidence                    123445777888754 4577788888888888883

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.01  Score=66.71  Aligned_cols=207  Identities=13%  Similarity=0.128  Sum_probs=145.8

Q ss_pred             CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC---CCcEEEEEeeccee
Q 001311          808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVRVDEV  882 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~~~~~  882 (1102)
                      ....+++++++..+....  ++.|.+.|..+........-- .....+++++ +++.+.++..   ++.+.+.|-.+++.
T Consensus        75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG-~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG-LGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             cccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec-cCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeE
Confidence            345678888888666554  689999998776666554422 2678899999 6655555544   68999999888887


Q ss_pred             eeeeccccccceeEEEecCCCEEEEE-cCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001311          883 KSKLKGHSKRITGLAFSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  959 (1102)
Q Consensus       883 ~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~  959 (1102)
                      +.....-..+ ..++++|+|..+..+ ..++.|.+.|..+..... .   ..............+.++++|.++.+.  .
T Consensus       153 ~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~---~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~  227 (381)
T COG3391         153 TATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-G---SVGSLVGVGTGPAGIAVDPDGNRVYVANDG  227 (381)
T ss_pred             EEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-c---ccccccccCCCCceEEECCCCCEEEEEecc
Confidence            7775433334 889999999966555 478899999977644321 0   000001111345789999999988774  2


Q ss_pred             C--CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-CeEEEEEcCCceeEEEeC
Q 001311          960 E--TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-ATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       960 d--~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-g~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +  +.+...|..++.....-...+-. ....+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus       228 ~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         228 SGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             CCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            2  58999999998887763322223 57788999999998887544 889999999988887665

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.74  E-value=0.049  Score=63.81  Aligned_cols=149  Identities=12%  Similarity=0.078  Sum_probs=87.2

Q ss_pred             cEEEEEeecceeeeeecccccccee---------EEEecCCC---EEEEEcCCCcEEEEEcCCCcccceee------e--
Q 001311          871 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHALN---VLVSSGADSQLCVWSSDGWEKQKNRF------L--  930 (1102)
Q Consensus       871 ~v~vwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~------~--  930 (1102)
                      .|.-.|+++|+..-.++.....++.         +.+..+|+   .++.++.+|.+.+.|-.+++......      .  
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            5666788888887666542222221         12224665   78899999999999999987642100      0  


Q ss_pred             ec--CCCCCC-----------C-------C---CC--CcEEEEccCCcEEEE-EeC------------------------
Q 001311          931 QI--PTGRTP-----------T-------A---QS--DTRVQFHQDQIHFLV-VHE------------------------  960 (1102)
Q Consensus       931 ~~--~~~~~~-----------~-------~---~~--v~~~~~spdg~~l~~-~~d------------------------  960 (1102)
                      .+  ..+...           .       +   +.  =..++++|+..++.+ ..+                        
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence            00  000000           0       0   00  022567776655554 121                        


Q ss_pred             ---------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          961 ---------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 ---------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                               +.|.-+|+.+++..-......  ....+. +.-.+.+++.++.||.++.+|..+|+.+-+++
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~--p~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDF--PLWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCCC--CCCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence                     357778888887766543211  111111 12255577778889999999999999998887

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.74  E-value=0.0015  Score=72.38  Aligned_cols=114  Identities=17%  Similarity=0.176  Sum_probs=80.5

Q ss_pred             CCCeeEEEEec-CCCeEEEE----e-CCe----EEEEEcCCCceeee---ecCCCCCeeEEEEecCCCcEEEEEeCCCcE
Q 001311          806 EEAVPCFALSK-NDSYVMSA----S-GGK----ISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSI  872 (1102)
Q Consensus       806 ~~~i~~l~~s~-d~~~las~----s-dg~----I~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v  872 (1102)
                      +....++.||- +...+.+.    + +|.    -.+|+....+..+.   --.....|.+++++| +...|+.|+.||+|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence            34456677775 33333332    2 333    45666654432211   123567899999999 88999999999999


Q ss_pred             EEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCC
Q 001311          873 QIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  922 (1102)
Q Consensus       873 ~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  922 (1102)
                      .+||...+..  .+..+.-..+.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus       284 iLyD~~~~~t--~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  284 ILYDTTRGVT--LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCCee--eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            9999876532  23334456788999999999999999999999998753

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.72  E-value=0.0073  Score=68.17  Aligned_cols=218  Identities=17%  Similarity=0.194  Sum_probs=118.1

Q ss_pred             CCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311          806 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      ...+..+.++|+|+++++++||...|+.....+...     .+.....+|.+ +++ +|+-..++.|.|+.--+.+....
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~  104 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS  104 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence            445789999999999999889999999854443322     23456788998 555 56666688999973223333223


Q ss_pred             eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE
Q 001311          886 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI  965 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~i  965 (1102)
                      ++.. ..+..|-.   |.+|...+.+ .|.+||+++++...     ....     ..|..+.|+++|.+++...+..+.|
T Consensus       105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~-----~i~v-----~~vk~V~Ws~~g~~val~t~~~i~i  169 (443)
T PF04053_consen  105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIR-----RIDV-----SAVKYVIWSDDGELVALVTKDSIYI  169 (443)
T ss_dssp             ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEE-----EESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred             EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcceee-----EEec-----CCCcEEEEECCCCEEEEEeCCeEEE
Confidence            3321 12333333   8888777655 79999999865422     2211     1478999999999999988888888


Q ss_pred             EEcCCc--------------eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee--EEEeCCCcccCC
Q 001311          966 FETTKL--------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPA 1029 (1102)
Q Consensus       966 wd~~~~--------------~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~~~~~ 1029 (1102)
                      ++.+..              ..+..+     ...|.+.+|..| -++.+. .. .++-  +-.|+.  ++.+.       
T Consensus       170 l~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld-------  232 (443)
T PF04053_consen  170 LKYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD-------  232 (443)
T ss_dssp             EEE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-------
T ss_pred             EEecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-------
Confidence            776544              222221     568889999766 344433 33 5665  444433  32222       


Q ss_pred             CCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1030 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1030 gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                          ..++  -+.+.++ .+.+.....|+.|..+.+...+
T Consensus       233 ----~~~y--llgy~~~-~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  233 ----KPLY--LLGYLPK-ENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             ----S--E--EEEEETT-TTEEEEE-TT--EEEEE--HHH
T ss_pred             ----CceE--EEEEEcc-CCEEEEEECCCCEEEEEECHHH
Confidence                1244  4455553 4688888899999888775543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.63  E-value=0.11  Score=58.84  Aligned_cols=136  Identities=18%  Similarity=0.237  Sum_probs=77.2

Q ss_pred             EEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccc-c
Q 001311          813 ALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGH-S  890 (1102)
Q Consensus       813 ~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~  890 (1102)
                      .++.+....+... ++.+.+.+....+.   +. ..+++..+++|| ++++||.-..+|.+.|.+..-.+....+... .
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~  259 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK  259 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence            3445555555444 56666555433211   22 346799999999 9999999999999999876555555555433 3


Q ss_pred             ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCC
Q 001311          891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK  970 (1102)
Q Consensus       891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~  970 (1102)
                      .....|.|.-++..++.-  ...|.+.....                      ..+.|.-++..++...-..++|+.-..
T Consensus       260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~----------------------~~~~~~~~~~~~l~~E~DG~riit~~~  315 (410)
T PF04841_consen  260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG----------------------DSISFWYDGPVILVSEIDGVRIITSTS  315 (410)
T ss_pred             CCCcEEEEECCCcEEEEe--CCEEEEECCCC----------------------CceEEeccCceEEeccCCceEEEeCCc
Confidence            455677776553333222  22344443221                      223444444444444333477776666


Q ss_pred             ceEeeee
Q 001311          971 LECVKQW  977 (1102)
Q Consensus       971 ~~~~~~~  977 (1102)
                      .+.++..
T Consensus       316 ~~~l~~V  322 (410)
T PF04841_consen  316 HEFLQRV  322 (410)
T ss_pred             eEEEEEC
Confidence            5555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.58  E-value=0.0014  Score=73.51  Aligned_cols=184  Identities=14%  Similarity=0.131  Sum_probs=116.4

Q ss_pred             CCCeeEEEEecCCCeEEEEe---CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEE-EEeCCC--cEEEEEe
Q 001311          806 EEAVPCFALSKNDSYVMSAS---GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA-IGMDDS--SIQIYNV  877 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s---dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~la-sg~~dg--~v~vwd~  877 (1102)
                      ...+..-+|+++++.++...   .+  .+.++++.+++....+. ..+.-..-+|+| ||+.|+ +...||  .|+++|+
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp-DG~~l~f~~~rdg~~~iy~~dl  269 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP-DGSKLAFSSSRDGSPDIYLMDL  269 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC-CCCEEEEEECCCCCccEEEEcC
Confidence            44566678999999877664   23  59999999887665554 344456678999 555554 555666  5666677


Q ss_pred             ecceeeeeeccccccceeEEEecCCCEEEEEc-CCCc--EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcE
Q 001311          878 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQ--LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  954 (1102)
Q Consensus       878 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  954 (1102)
                      .++. +..+..-.+.-+.=.|+|||++++-.+ ..|.  |.+.+.++...  .+ + ...+.     .-..-.+||||++
T Consensus       270 ~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~r-i-T~~~~-----~~~~p~~SpdG~~  339 (425)
T COG0823         270 DGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TR-L-TFSGG-----GNSNPVWSPDGDK  339 (425)
T ss_pred             CCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eE-e-eccCC-----CCcCccCCCCCCE
Confidence            7665 344554444444678999999988665 3444  55666666443  11 1 11111     1136789999999


Q ss_pred             EEEEe--CCe--EEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311          955 FLVVH--ETQ--LAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus       955 l~~~~--d~~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
                      ++...  +|.  |.+.|+.++...+.+.   +......-.|.++++.+...+.-
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt---~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASGGKIRILT---STYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEEEeccCCceeeEEeccCCCCcEEEcc---ccccCCCCCcCCCCceEEEeccC
Confidence            99842  454  7777777666444332   23444566788888887755533

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.48  E-value=0.1  Score=60.09  Aligned_cols=246  Identities=15%  Similarity=0.121  Sum_probs=124.5

Q ss_pred             eeEEEEecCCCeEEEEEecCC----eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          349 PMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       349 v~~v~~spdg~~llasg~~d~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      +...++||||++++++-+..|    +|+|.|+.+|+.+...                  +..  ..-..++|.+|++.|+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~------------------i~~--~~~~~~~W~~d~~~~~  185 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG------------------IEN--PKFSSVSWSDDGKGFF  185 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE------------------EEE--EESEEEEECTTSSEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc------------------ccc--cccceEEEeCCCCEEE
Confidence            346789999998766655555    5999999999776531                  111  0122399999999887


Q ss_pred             EEECCC-----------eEEEEEccCCceeeeEEEeeccccC--EEEEEEcCCCCeeEEEEecCC--CcEEEEeCCCC--
Q 001311          425 VAYSRH-----------IVQIYSYHGGDEVRQHLEIDAHVGG--VNDIAFSHPNKQLCVITCGDD--KTIKVWDATNG--  487 (1102)
Q Consensus       425 s~~~d~-----------~v~vwd~~~~~~~~~~~~l~~h~~~--V~~v~~s~d~~~~~l~s~~~d--~~i~vWd~~~~--  487 (1102)
                      ....+.           .|+.|++.++..-. ...+.+....  ...+..++|++.+++.+.+..  ..+.+-|+..+  
T Consensus       186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~  264 (414)
T PF02897_consen  186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGS  264 (414)
T ss_dssp             EEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTT
T ss_pred             EEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCC
Confidence            765433           37778877664321 1124443333  568889999996333333322  35888888775  


Q ss_pred             --eeeEEeecCCCCeEEEeeeecCCccEEEEEeC---CCeEEEEEcCCCCCe--e-eecCCCCeeeEEEEccCCceeeec
Q 001311          488 --AKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSR--V-DYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       488 --~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~--~-~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                        .....+......+....-+. .+ .+++....   .+.|...++......  . .+..+...                
T Consensus       265 ~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~----------------  326 (414)
T PF02897_consen  265 PDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED----------------  326 (414)
T ss_dssp             SS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS----------------
T ss_pred             CcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc----------------
Confidence              23333333333343322222 22 23333322   345655666554321  1 11111110                


Q ss_pred             cccCceeEEEEcCCCCEEEEE-eC--CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC----CCcEEE
Q 001311          560 FRKRSLGVVQFDTTKNRFLAA-GD--DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIKI  632 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~i  632 (1102)
                         ..+..+  ...+++|+.. ..  ...|+++++..+.....+.... ...|..+...+++..+.....    -+++..
T Consensus       327 ---~~l~~~--~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~-~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~  400 (414)
T PF02897_consen  327 ---VSLEDV--SLFKDYLVLSYRENGSSRLRVYDLDDGKESREIPLPE-AGSVSGVSGDFDSDELRFSYSSFTTPPTVYR  400 (414)
T ss_dssp             ---EEEEEE--EEETTEEEEEEEETTEEEEEEEETT-TEEEEEEESSS-SSEEEEEES-TT-SEEEEEEEETTEEEEEEE
T ss_pred             ---eeEEEE--EEECCEEEEEEEECCccEEEEEECCCCcEEeeecCCc-ceEEeccCCCCCCCEEEEEEeCCCCCCEEEE
Confidence               011122  2223344443 33  3468889998344444444332 223445554555554443322    256778


Q ss_pred             EEccCCc
Q 001311          633 LATSDGI  639 (1102)
Q Consensus       633 wd~~~~~  639 (1102)
                      ||+.++.
T Consensus       401 ~d~~t~~  407 (414)
T PF02897_consen  401 YDLATGE  407 (414)
T ss_dssp             EETTTTC
T ss_pred             EECCCCC
Confidence            8887773

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.45  E-value=0.00012  Score=80.53  Aligned_cols=250  Identities=14%  Similarity=0.177  Sum_probs=151.0

Q ss_pred             CCeeEEEEecCC--CeEEEEe-CCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEe----CCCcEEEEEe
Q 001311          807 EAVPCFALSKND--SYVMSAS-GGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGM----DDSSIQIYNV  877 (1102)
Q Consensus       807 ~~i~~l~~s~d~--~~las~s-dg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~----~dg~v~vwd~  877 (1102)
                      ..+.|++...+.  -.+++|. +|.|.+-..+...-  .....++...+++++|++-|.++||.|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            345666665443  3667777 89888887764332  2335567788999999998888999874    4568999999


Q ss_pred             ecc--ee--eeeecc-ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc-C
Q 001311          878 RVD--EV--KSKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-D  951 (1102)
Q Consensus       878 ~~~--~~--~~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-d  951 (1102)
                      .++  ..  ...|.+ -.....+++|-.|.+++.+|...+.+.++|+...-..... +++        ..+..+..+| .
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s-vnT--------k~vqG~tVdp~~  207 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS-VNT--------KYVQGITVDPFS  207 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh-hhh--------hhcccceecCCC
Confidence            876  11  122222 2334568899988899999999999999998732111111 111        1456788889 8


Q ss_pred             CcEEEEEeCCeEEEEEc-CCce-EeeeeccC--CCCCCeeEEEEcCCCc-EEEEEeCC-CeEEEEEcCC------ceeEE
Q 001311          952 QIHFLVVHETQLAIFET-TKLE-CVKQWVPR--ESSAPITHATFSCDSQ-LVYACFLD-ATVCVFSAAN------LKLRC 1019 (1102)
Q Consensus       952 g~~l~~~~d~~i~iwd~-~~~~-~~~~~~~~--~h~~~v~~l~~spd~~-~l~s~s~D-g~I~vwd~~~------~~~~~ 1019 (1102)
                      +.|++...|+.|.+||. .+-+ .+......  .-...+..++|+|-.. .+++.+.| ++|+.+|+..      ++...
T Consensus       208 ~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~  287 (783)
T KOG1008|consen  208 PNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSV  287 (783)
T ss_pred             CCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccc
Confidence            89999988999999994 2222 11111110  1123589999999543 45555554 7899998742      11111


Q ss_pred             EeCCCcccCCCCCC--CcccceEEEecCCC-CCEEEEEecCCcEEEEeccC
Q 001311         1020 RINPSAYLPAGVSS--SNVHPLVIAAHPQE-PNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1020 ~~~~~~~~~~gh~~--~~v~~~~v~f~p~d-~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      .+......+-.|.+  ..|.  ...|++.+ -...+++-..-...-+++.+
T Consensus       288 ~~~~~s~~~~q~~~~~s~I~--~f~wH~~s~~er~il~~~nl~~~Df~V~e  336 (783)
T KOG1008|consen  288 FVNYESKYPVQPNSQCSGID--FFTWHTASPTERQILGVINLQPKDFSVHE  336 (783)
T ss_pred             eeeeccccccccccccccee--ecCcCcCCccceeEEeeccCChhhccchh
Confidence            11112211222223  2233  56666644 23455555555666666544

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.44  E-value=0.0052  Score=69.12  Aligned_cols=163  Identities=16%  Similarity=0.134  Sum_probs=96.6

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecC---CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNV---GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d---~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      +..-...+..-+|+|+++.+....-..   ..+.++|+++++.....+                    -.+.-..-+|||
T Consensus       188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--------------------~~g~~~~P~fsp  247 (425)
T COG0823         188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--------------------FNGNNGAPAFSP  247 (425)
T ss_pred             ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--------------------cCCccCCccCCC
Confidence            333566777889999999855553332   359999999887665322                    233445678999


Q ss_pred             CCCeEEEEE-CCCe--EEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc--EEEEeCCCCeeeEEe
Q 001311          419 DGSLFGVAY-SRHI--VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDATNGAKQYIF  493 (1102)
Q Consensus       419 dg~~las~~-~d~~--v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~vWd~~~~~~~~~~  493 (1102)
                      ||++||.+. .||.  |.+.|+.++...+    +..-.+.-..=.|+|||+. ++++.+..|.  |.+.|++.+.. ..+
T Consensus       248 DG~~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~-~ri  321 (425)
T COG0823         248 DGSKLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQV-TRL  321 (425)
T ss_pred             CCCEEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCce-eEe
Confidence            999998764 4554  6667887766332    3322333336679999997 3444555554  55556554443 333


Q ss_pred             ecCCCCeEEEeeeecCCccEEEEEeC-CCe--EEEEEcCCCC
Q 001311          494 EGHEAPVYSVCPHHKENIQFIFSTAL-DGK--IKAWLYDNLG  532 (1102)
Q Consensus       494 ~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~--i~~wd~~~~~  532 (1102)
                      .-..+.-..-.|  +++|++|+..+. +|.  |.+.|+.+..
T Consensus       322 T~~~~~~~~p~~--SpdG~~i~~~~~~~g~~~i~~~~~~~~~  361 (425)
T COG0823         322 TFSGGGNSNPVW--SPDGDKIVFESSSGGQWDIDKNDLASGG  361 (425)
T ss_pred             eccCCCCcCccC--CCCCCEEEEEeccCCceeeEEeccCCCC
Confidence            222221112233  567777777664 344  5555555444

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.44  E-value=0.25  Score=53.55  Aligned_cols=228  Identities=16%  Similarity=0.131  Sum_probs=109.4

Q ss_pred             EEecCCCeEEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC-CCeEEEEEccCCCeEEEEECC
Q 001311          353 DFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSR  429 (1102)
Q Consensus       353 ~~spdg~~llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d  429 (1102)
                      +|.+||+.||.++..||  .+.+-|+.+++..+.                    .... .......++|+++.|+-...+
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QL--------------------Tdg~g~~~~g~~~s~~~~~~~Yv~~~  101 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQL--------------------TDGPGDNTFGGFLSPDDRALYYVKNG  101 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEEC--------------------ccCCCCCccceEEecCCCeEEEEECC
Confidence            57899999888888777  577778888877652                    2221 223346778999988877777


Q ss_pred             CeEEEEEccCCceeeeEEEeeccccCEEEEEEc--CCCCeeEEEEec----------------------CCCcEEEEeCC
Q 001311          430 HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS--HPNKQLCVITCG----------------------DDKTIKVWDAT  485 (1102)
Q Consensus       430 ~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s--~d~~~~~l~s~~----------------------~d~~i~vWd~~  485 (1102)
                      ..|+--|+++.+.. .+  +....+.+-...|.  .|+.  .++..-                      ..+.|.--|+.
T Consensus       102 ~~l~~vdL~T~e~~-~v--y~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~  176 (386)
T PF14583_consen  102 RSLRRVDLDTLEER-VV--YEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK  176 (386)
T ss_dssp             TEEEEEETTT--EE-EE--EE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred             CeEEEEECCcCcEE-EE--EECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence            78999999997643 33  33345555445553  4555  332211                      12345666777


Q ss_pred             CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC---CC-eEEEEEcCCCCCe-eeec--CCCCeeeEEEEccCCceeee
Q 001311          486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DG-KIKAWLYDNLGSR-VDYE--APGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---dg-~i~~wd~~~~~~~-~~~~--~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      +|+....+. -...+..+.|+|... .+|.-|-.   |. .-|||-+++.... ..+.  .....+..=-|.+||..++ 
T Consensus       177 tG~~~~v~~-~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~-  253 (386)
T PF14583_consen  177 TGERKVVFE-DTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW-  253 (386)
T ss_dssp             T--EEEEEE-ESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE-
T ss_pred             CCceeEEEe-cCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE-
Confidence            777655554 445566677765433 34444422   22 1366766653322 2221  1223444456677776322 


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  627 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  627 (1102)
                              -....+       ++.+..|.-+|+.+++........    .......++||++++-=+.|
T Consensus       254 --------y~~~~~-------~~~~~~i~~~d~~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  254 --------YDSYTP-------GGQDFWIAGYDPDTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             --------EEEEET-------TT--EEEEEE-TTT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             --------EEeecC-------CCCceEEEeeCCCCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence                    111111       123445666777777654333221    23346667888877654443

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.43  E-value=0.03  Score=65.99  Aligned_cols=204  Identities=14%  Similarity=0.076  Sum_probs=110.9

Q ss_pred             CCCeeEEEEecCCCcEEEEEe------CCC--cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCC-C-----
Q 001311          847 PPAATFLAFHPQDNNIIAIGM------DDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD-S-----  912 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~------~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-g-----  912 (1102)
                      ...+...+++| +++.+|...      .|+  .|.+++. .+.......+.  ..+.-.|+|||+.|++.... .     
T Consensus       349 ~~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        349 MGNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             ccCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence            34678999999 777776655      244  4555554 22222222332  37889999999988877533 1     


Q ss_pred             ------cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEE---EEcCCceEeee-----ec
Q 001311          913 ------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAI---FETTKLECVKQ-----WV  978 (1102)
Q Consensus       913 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~i---wd~~~~~~~~~-----~~  978 (1102)
                            .+.+.+++.++...           .....|..+.|||||+.++...++.|++   -....|. ...     +.
T Consensus       425 ~~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~  492 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVG  492 (591)
T ss_pred             ccCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEee
Confidence                  22222333322210           1124699999999999999976788887   4544554 111     11


Q ss_pred             cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC-ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC
Q 001311          979 PRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1057 (1102)
Q Consensus       979 ~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D 1057 (1102)
                       .+-...+.++.|..++.++ ++..++...+|.++- |.....+      +.+.....+  ++|+-.+   ..+.....+
T Consensus       493 -~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~------~~~n~~~~v--~~vaa~~---~~iyv~~~~  559 (591)
T PRK13616        493 -PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL------PSRNLSAPV--VAVAASP---STVYVTDAR  559 (591)
T ss_pred             -cccCCccccceEecCCEEE-EEecCCCCceEEEecCCcccccc------CCCCccCce--EEEecCC---ceEEEEcCC
Confidence             1223346889999999965 555555555555432 2211111      111011112  2566555   245555556


Q ss_pred             CcEEEEeccCCCcccccCCCCC
Q 001311         1058 GGVHVFEPLESEGKWGVPPPVD 1079 (1102)
Q Consensus      1058 g~v~vW~~~~~~~~~~~~~~~~ 1079 (1102)
                      |.+.+=.-.+++..|+.-+...
T Consensus       560 g~~~l~~~~~~~~~W~ev~~l~  581 (591)
T PRK13616        560 AVLQLPNSDSGDQYWREVPGLM  581 (591)
T ss_pred             ceEEecCCCCCCCCceECcccc
Confidence            6443332233346777655443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.41  E-value=0.065  Score=57.65  Aligned_cols=231  Identities=12%  Similarity=0.134  Sum_probs=131.5

Q ss_pred             cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCe
Q 001311          749 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGK  828 (1102)
Q Consensus       749 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~  828 (1102)
                      ..++.|+.|+++| +.+++....                    .+ ...     ..+...|..+...++-+.+++-+|+.
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~--------------------~~-~~~-----i~~~~~I~ql~vl~~~~~llvLsd~~   57 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDP--------------------SK-PTR-----ILKLSSITQLSVLPELNLLLVLSDGQ   57 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCC--------------------cc-cee-----EeecceEEEEEEecccCEEEEEcCCc
Confidence            4567788998888 777765110                    00 000     00334499999999999999999999


Q ss_pred             EEEEEcCCCceeeee--------------cCCCCCeeEEE--EecCCCcEEEEEeCCCcEEEEEeecc-----eeeeeec
Q 001311          829 ISLFNMMTFKTMATF--------------MPPPPAATFLA--FHPQDNNIIAIGMDDSSIQIYNVRVD-----EVKSKLK  887 (1102)
Q Consensus       829 I~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~sp~d~~~lasg~~dg~v~vwd~~~~-----~~~~~l~  887 (1102)
                      ++++++.........              ......+...+  -...+..+|+++. ...|.+|.....     +..+++.
T Consensus        58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~  136 (275)
T PF00780_consen   58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEIS  136 (275)
T ss_pred             cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEE
Confidence            999998765443311              11222344444  1121445555554 558999888753     3445554


Q ss_pred             cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC------CCCCCCCcEEEEccCCcEEEEEeCC
Q 001311          888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR------TPTAQSDTRVQFHQDQIHFLVVHET  961 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~------~~~~~~v~~~~~spdg~~l~~~~d~  961 (1102)
                       -...+.+++|.  ++.|+.+..++ ..+.|+.++.....  .......      .....++..+.. +++.+|++- +.
T Consensus       137 -lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~-~~  208 (275)
T PF00780_consen  137 -LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSEL--LDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY-DN  208 (275)
T ss_pred             -cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEE--eCccCCcchhhhcccCCCceEEEEe-CCceEEEEe-cc
Confidence             34678899998  55677776555 88899987554221  1111100      000112222233 345655543 33


Q ss_pred             eEEEEEcCCceEee--eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          962 QLAIFETTKLECVK--QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       962 ~i~iwd~~~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .-...|. .|+..+  .+.-   ...+.++++  ...||+..+. +.|.||++.++++++.+.
T Consensus       209 ~g~fv~~-~G~~~r~~~i~W---~~~p~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  209 IGVFVNK-NGEPSRKSTIQW---SSAPQSVAY--SSPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             eEEEEcC-CCCcCcccEEEc---CCchhEEEE--ECCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            2223333 343322  1111   335666666  3457776654 569999999999998877

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.37  E-value=0.19  Score=56.60  Aligned_cols=240  Identities=16%  Similarity=0.168  Sum_probs=156.1

Q ss_pred             CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      ....+.+.+++..+....  ...+...+.. ...... ..........+++++.+.+..+....+..|.+.|..+.+...
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~  110 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG  110 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence            456677888886555554  2345555554 222222 121113456778888444466666667999999977766655


Q ss_pred             eeccccccceeEEEecCCCEEEEEcC---CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001311          885 KLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  959 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~  959 (1102)
                      ...--. .-..++++++++.+..+..   ++++.+.|-.+.+....    ...+..    + ..++++|+|..+.+.  .
T Consensus       111 ~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~~----P-~~~a~~p~g~~vyv~~~~  180 (381)
T COG3391         111 SIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGNT----P-TGVAVDPDGNKVYVTNSD  180 (381)
T ss_pred             Eeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCCC----c-ceEEECCCCCeEEEEecC
Confidence            543222 4567999999977776655   67888888777654322    233322    2 889999999988875  5


Q ss_pred             CCeEEEEEcCCceEeeeecc---CCCCCCeeEEEEcCCCcEEEEEeCC---CeEEEEEcCCceeEEEeCCCcccCCCCCC
Q 001311          960 ETQLAIFETTKLECVKQWVP---RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRINPSAYLPAGVSS 1033 (1102)
Q Consensus       960 d~~i~iwd~~~~~~~~~~~~---~~h~~~v~~l~~spd~~~l~s~s~D---g~I~vwd~~~~~~~~~~~~~~~~~~gh~~ 1033 (1102)
                      ++.|.+.|..+....+ ...   ..-......+.++|||.++......   +.+.+.|..++.....-...        .
T Consensus       181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~--------~  251 (381)
T COG3391         181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV--------G  251 (381)
T ss_pred             CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc--------c
Confidence            8999999987776664 110   1124456788999999977665544   58999999998887652211        1


Q ss_pred             CcccceEEEecCCCCCEEEEE-ecCCcEEEEeccCCC
Q 001311         1034 SNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1034 ~~v~~~~v~f~p~d~~~l~s~-~~Dg~v~vW~~~~~~ 1069 (1102)
                      .. .+..+...| ++..+.+. +..+.+.+-|..+..
T Consensus       252 ~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~  286 (381)
T COG3391         252 SG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR  286 (381)
T ss_pred             cC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence            11 344688899 46666555 444888888887766

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.28  E-value=0.11  Score=59.68  Aligned_cols=239  Identities=12%  Similarity=0.092  Sum_probs=129.0

Q ss_pred             eeEEEEecCCCeEEEEe--CC----eEEEEEcCCCceeeee-cCCCCCeeEEEEecCCCcEEEEEeCC-----------C
Q 001311          809 VPCFALSKNDSYVMSAS--GG----KISLFNMMTFKTMATF-MPPPPAATFLAFHPQDNNIIAIGMDD-----------S  870 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s--dg----~I~iwd~~~~~~~~~~-~~~~~~i~~l~~sp~d~~~lasg~~d-----------g  870 (1102)
                      +..+.+||||+++|.+-  .|    .|+++|+.+++.+... ..  .....+.|.+ |++.|+....+           .
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence            34678999999999773  33    4999999999766432 21  1123499999 66655544322           2


Q ss_pred             cEEEEEeecceee--eeecccccc--ceeEEEecCCCEEEEEcCC----CcEEEEEcCCC--cccceeeeecCCCCCCCC
Q 001311          871 SIQIYNVRVDEVK--SKLKGHSKR--ITGLAFSHALNVLVSSGAD----SQLCVWSSDGW--EKQKNRFLQIPTGRTPTA  940 (1102)
Q Consensus       871 ~v~vwd~~~~~~~--~~l~~h~~~--V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~--~~~~~~~~~~~~~~~~~~  940 (1102)
                      .|+.|.+.+...-  ..+......  ...+..++|+++|+.....    ..+.+.++..+  .......+....      
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~------  276 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE------  276 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS------
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC------
Confidence            4778887664322  333333332  4678899999998754322    34677777764  111222222211      


Q ss_pred             CCCcEEEEccCCcEEEEE----eCCeEEEEEcCCceE---eeeeccCCCCC--CeeEEEEcCCCcEE-EEEeCCC--eEE
Q 001311          941 QSDTRVQFHQDQIHFLVV----HETQLAIFETTKLEC---VKQWVPRESSA--PITHATFSCDSQLV-YACFLDA--TVC 1008 (1102)
Q Consensus       941 ~~v~~~~~spdg~~l~~~----~d~~i~iwd~~~~~~---~~~~~~~~h~~--~v~~l~~spd~~~l-~s~s~Dg--~I~ 1008 (1102)
                      ..+....-+.++.+++..    ..+.|...++.+...   ...+.  .|..  .+..+..  .+.+| +....++  .|+
T Consensus       277 ~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~--~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~  352 (414)
T PF02897_consen  277 DGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI--PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLR  352 (414)
T ss_dssp             SS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE----SSSEEEEEEEE--ETTEEEEEEEETTEEEEE
T ss_pred             CceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc--CCCCceeEEEEEE--ECCEEEEEEEECCccEEE
Confidence            123333333355555443    345777778877652   22333  3344  4555544  34444 4555554  488


Q ss_pred             EEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC---CcEEEEeccCCC
Q 001311         1009 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPLESE 1069 (1102)
Q Consensus      1009 vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D---g~v~vW~~~~~~ 1069 (1102)
                      ++++..+.....+.    ++..   ..+.  .+...+....+.++.++-   ++++.+|+.+++
T Consensus       353 v~~~~~~~~~~~~~----~p~~---g~v~--~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  353 VYDLDDGKESREIP----LPEA---GSVS--GVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEETT-TEEEEEEE----SSSS---SEEE--EEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred             EEECCCCcEEeeec----CCcc---eEEe--ccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence            99999445554444    2221   1122  455455444555555544   578889998887

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.27  E-value=0.014  Score=68.69  Aligned_cols=188  Identities=12%  Similarity=0.074  Sum_probs=104.4

Q ss_pred             CCeeEEEEecCCCeEEEEe-------CC--eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC--------
Q 001311          807 EAVPCFALSKNDSYVMSAS-------GG--KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------  869 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-------dg--~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------  869 (1102)
                      ..+.+.+++|||+.++...       |.  .|.+++... .. ..+.. ....+.-.|+| ||..|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            3578899999999887654       32  466666532 22 33321 22378889999 77777666432        


Q ss_pred             ----CcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEE---EEcCCCcccceeeeecCCCCCCCCCC
Q 001311          870 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV---WSSDGWEKQKNRFLQIPTGRTPTAQS  942 (1102)
Q Consensus       870 ----g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v---wd~~~~~~~~~~~~~~~~~~~~~~~~  942 (1102)
                          +.+++.++..++...   ...+.|..+.|||||..++... ++.|.|   -....|+...........+-.   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                234333444433322   2346799999999999988766 467776   444444321111112221111   23


Q ss_pred             CcEEEEccCCcEEEEEeCCeEEEE--EcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311          943 DTRVQFHQDQIHFLVVHETQLAIF--ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus       943 v~~~~~spdg~~l~~~~d~~i~iw--d~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
                      +..+.|..++.+++...++...+|  ++.... ...+........+.+++=+++  -|+....+|.+.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecCCcc-ccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            578999999997654433333344  444222 122122223556777776653  344455566443

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.098  Score=56.09  Aligned_cols=220  Identities=13%  Similarity=0.093  Sum_probs=125.8

Q ss_pred             EEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec---
Q 001311          813 ALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK---  887 (1102)
Q Consensus       813 ~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~---  887 (1102)
                      .|.++...|....  .+.|.-|+..+++. ..+... +.+.++..-. .+..|+++  +.-+++++..++..+..+.   
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p-~~~~~~~~~d-~~g~Lv~~--~~g~~~~~~~~~~~~t~~~~~~  105 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSP-GGFSSGALID-AGGRLIAC--EHGVRLLDPDTGGKITLLAEPE  105 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECC-CCcccceeec-CCCeEEEE--ccccEEEeccCCceeEEecccc
Confidence            4566776665555  68899999876543 333322 2334444333 34444443  2346677766555422221   


Q ss_pred             -c-ccccceeEEEecCCCEEEEEcC-----C----CcEEEEEcCC-CcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311          888 -G-HSKRITGLAFSHALNVLVSSGA-----D----SQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  955 (1102)
Q Consensus       888 -~-h~~~V~~l~~s~d~~~l~s~s~-----D----g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  955 (1102)
                       + -...-+.+...|+|.+-++...     .    ..-.+|-+.. +..     .....++.   ..-..++||||++.|
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-----~~l~~~~~---~~~NGla~SpDg~tl  177 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV-----VRLLDDDL---TIPNGLAFSPDGKTL  177 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCE-----EEeecCcE---EecCceEECCCCCEE
Confidence             1 1244567888899988776544     1    1124555542 221     11122111   133689999999888


Q ss_pred             EEE--eCCeEEEEEcCC--ceE---eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-eEEEEEcCCceeEEEeCCCccc
Q 001311          956 LVV--HETQLAIFETTK--LEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYL 1027 (1102)
Q Consensus       956 ~~~--~d~~i~iwd~~~--~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~~~ 1027 (1102)
                      ..+  ..+.|.-|++..  +..   ...+....+.+..-.++...+|.+.+++-.+| .|.+|+.+ |+++..+.    +
T Consensus       178 y~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~----l  252 (307)
T COG3386         178 YVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK----L  252 (307)
T ss_pred             EEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE----C
Confidence            875  447777777652  211   11122223456777888888998886555554 89999988 99999888    4


Q ss_pred             CCCCCCCcccceEEEecCCCCCEEEEEec
Q 001311         1028 PAGVSSSNVHPLVIAAHPQEPNEFALGLS 1056 (1102)
Q Consensus      1028 ~~gh~~~~v~~~~v~f~p~d~~~l~s~~~ 1056 (1102)
                      |.      ..+.+++|--.+.+.|...+.
T Consensus       253 P~------~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         253 PV------KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             CC------CCCccceEeCCCcCEEEEEec
Confidence            42      223378887545555544443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.23  E-value=0.0073  Score=71.78  Aligned_cols=151  Identities=13%  Similarity=0.147  Sum_probs=99.0

Q ss_pred             CCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC-eEEEeeeec---CCccEEEEEeCCCeEEEEEcCCCCCeeeecCC
Q 001311          465 NKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP-VYSVCPHHK---ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP  540 (1102)
Q Consensus       465 ~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~-v~~v~~~~~---~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~  540 (1102)
                      ++.++|........|+-.|++.|+.+..+..|... |..++-...   -+..-.+.|-.+..+..||.+-.+...... .
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~-~  570 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDS-Q  570 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeec-c
Confidence            34435555566788999999999999999887755 666652110   012346777788999999998643211100 0


Q ss_pred             CCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE
Q 001311          541 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL  620 (1102)
Q Consensus       541 ~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  620 (1102)
                                  + ..+  .+...+.|++-+.+| +||+|+.+|.||+||--..+....+.+-+  .+|.+|..+.||++
T Consensus       571 ------------~-k~Y--~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG--~pI~~iDvt~DGkw  632 (794)
T PF08553_consen  571 ------------S-KQY--SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLG--DPIIGIDVTADGKW  632 (794)
T ss_pred             ------------c-ccc--ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCC--CCeeEEEecCCCcE
Confidence                        0 001  222355566555554 49999999999999954333333444433  47999999999999


Q ss_pred             EEEEECCCcEEEEEc
Q 001311          621 LAVSTNDNGIKILAT  635 (1102)
Q Consensus       621 l~~~~~dg~i~iwd~  635 (1102)
                      |++.+. ..|.+++.
T Consensus       633 ilaTc~-tyLlLi~t  646 (794)
T PF08553_consen  633 ILATCK-TYLLLIDT  646 (794)
T ss_pred             EEEeec-ceEEEEEE
Confidence            997775 57777775

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.19  E-value=0.067  Score=58.93  Aligned_cols=175  Identities=15%  Similarity=0.136  Sum_probs=104.0

Q ss_pred             CeEEEEEcCCCceeeeecCCCC-CeeEE---EEecC---CCcEEEEEeC----------CCcEEEEEeecc----eeeee
Q 001311          827 GKISLFNMMTFKTMATFMPPPP-AATFL---AFHPQ---DNNIIAIGMD----------DSSIQIYNVRVD----EVKSK  885 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~-~i~~l---~~sp~---d~~~lasg~~----------dg~v~vwd~~~~----~~~~~  885 (1102)
                      +.|++.|..+.+.+.++.-... .++++   .|..+   ...+|++|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            3588888888877766443222 24443   33321   1578888863          289999999884    12222


Q ss_pred             e--ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc-ccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCC
Q 001311          886 L--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE-KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  961 (1102)
Q Consensus       886 l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~  961 (1102)
                      +  ....++|++|+-- +++ |+.+. .+.|.+|++...+ ......   ...      ..........+.+++++ ..+
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~---~~~------~~~i~sl~~~~~~I~vgD~~~  149 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAF---YDS------PFYITSLSVFKNYILVGDAMK  149 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEE---E-B------SSSEEEEEEETTEEEEEESSS
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhe---ecc------eEEEEEEeccccEEEEEEccc
Confidence            2  2357889998876 444 44333 4679999998866 222211   111      23444455556688886 456


Q ss_pred             eEEEEEcCC-ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311          962 QLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus       962 ~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
                      .+.++.... ...+..+........++++.|-+|++.++.+..+|.+.++..+
T Consensus       150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            666664432 3323333323346678999998777799999999999999876

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.17  E-value=0.041  Score=55.34  Aligned_cols=250  Identities=12%  Similarity=0.155  Sum_probs=129.1

Q ss_pred             CCeeEEEEecCCCeEEEEEecCC-eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVG-DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~-~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      ..-..|+|+|.-..-++-+-.-| ...++|..+.+.+....           .....-+.||.      .|||||.+|..
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~-----------s~~~RHfyGHG------vfs~dG~~LYA  130 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV-----------SQEGRHFYGHG------VFSPDGRLLYA  130 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe-----------cccCceeeccc------ccCCCCcEEEe
Confidence            34445777777665455555544 46788888876655311           11112355664      69999999987


Q ss_pred             EECC-----CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC----------------CCcEEEEeC
Q 001311          426 AYSR-----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD----------------DKTIKVWDA  484 (1102)
Q Consensus       426 ~~~d-----~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~----------------d~~i~vWd~  484 (1102)
                      .-+|     |.|-|||...+  +....++..|.-.-..+.|.+||+.+.++-|+-                .-++.+-|.
T Consensus       131 TEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~  208 (366)
T COG3490         131 TENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDA  208 (366)
T ss_pred             ecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEec
Confidence            6443     78999999853  455567888888888999999999532222211                112344444


Q ss_pred             CCCeeeEE--ee--cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC--CCeeeecCCCCeeeEEEEccCCceeee
Q 001311          485 TNGAKQYI--FE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       485 ~~~~~~~~--~~--~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      .+|..+..  +.  -+...|..+..  ..||. +..|+.      |.-...  ..+.-....+..+.-+...++   ...
T Consensus       209 atG~liekh~Lp~~l~~lSiRHld~--g~dgt-vwfgcQ------y~G~~~d~ppLvg~~~~g~~l~~~~~pee---~~~  276 (366)
T COG3490         209 ATGNLIEKHTLPASLRQLSIRHLDI--GRDGT-VWFGCQ------YRGPRNDLPPLVGHFRKGEPLEFLDLPEE---QTA  276 (366)
T ss_pred             cccchhhhccCchhhhhcceeeeee--CCCCc-EEEEEE------eeCCCccCCcceeeccCCCcCcccCCCHH---HHH
Confidence            45554432  11  12333444432  23322 222211      100000  000000001111111100000   000


Q ss_pred             ccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  634 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  634 (1102)
                      . -...+.+++.+.+..+++..+ ..+...+||..+|..+..-...    .+..++  +...-+++.+.+|.+.++.
T Consensus       277 ~-~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~----daaGva--~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         277 A-FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP----DAAGVA--AAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             H-HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc----ccccce--eccCceEEecCCceEEecc
Confidence            0 012445566665555555544 5667889999999987655422    222333  3344466667788888774

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.12  E-value=0.11  Score=57.17  Aligned_cols=219  Identities=13%  Similarity=0.087  Sum_probs=119.6

Q ss_pred             CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE---EEccC----CCeEEEEEC----------CCe
Q 001311          369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV---IWSPD----GSLFGVAYS----------RHI  431 (1102)
Q Consensus       369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l---~~spd----g~~las~~~----------d~~  431 (1102)
                      ..|++.|..+.+.+....+.-                  ...|.++   .|..+    ..+|++|..          .|.
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~------------------~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr   63 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEP------------------NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR   63 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEET------------------TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE
T ss_pred             cEEEEEeCCCCeEEEEEECCC------------------CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE
Confidence            467888888887776544431                  2234433   34433    578887753          288


Q ss_pred             EEEEEccCC----ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe-eeEEee-cCCCCeEEEee
Q 001311          432 VQIYSYHGG----DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA-KQYIFE-GHEAPVYSVCP  505 (1102)
Q Consensus       432 v~vwd~~~~----~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~-~~~~~~-~h~~~v~~v~~  505 (1102)
                      |.++++...    ..++.... ....++|++|+-. .+.  ++++.  .+.|.+|++...+ ....-. .....+.++..
T Consensus        64 i~v~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   64 ILVFEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             EEEEEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            999999984    23333322 2457899999876 343  34433  3689999998887 443222 12235555553


Q ss_pred             eecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCe
Q 001311          506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  585 (1102)
Q Consensus       506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  585 (1102)
                        ..  ++++.|...+.|.++.++......         .-++-...         ...+.++.+-++++.++.+..+|.
T Consensus       138 --~~--~~I~vgD~~~sv~~~~~~~~~~~l---------~~va~d~~---------~~~v~~~~~l~d~~~~i~~D~~gn  195 (321)
T PF03178_consen  138 --FK--NYILVGDAMKSVSLLRYDEENNKL---------ILVARDYQ---------PRWVTAAEFLVDEDTIIVGDKDGN  195 (321)
T ss_dssp             --ET--TEEEEEESSSSEEEEEEETTTE-E---------EEEEEESS----------BEEEEEEEE-SSSEEEEEETTSE
T ss_pred             --cc--cEEEEEEcccCEEEEEEEccCCEE---------EEEEecCC---------CccEEEEEEecCCcEEEEEcCCCe
Confidence              23  589999888888888665422211         11111111         113344444433357888999999


Q ss_pred             EEEEECCC-------c--ceEEEEcCCCCCCCcCeE---EEcC--CC------CEEEEEECCCcEEEEE
Q 001311          586 IKFWDMDS-------V--QLLTSIDADGGLPASPRI---RFNK--DG------CLLAVSTNDNGIKILA  634 (1102)
Q Consensus       586 i~iwd~~~-------~--~~~~~~~~~~~~~~v~~~---~~s~--~~------~~l~~~~~dg~i~iwd  634 (1102)
                      +.++....       +  +.......+-+ ..|+++   ++.|  .+      ..++.++.+|.|-..-
T Consensus       196 l~~l~~~~~~~~~~~~~~~L~~~~~f~lg-~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~  263 (321)
T PF03178_consen  196 LFVLRYNPEIPNSRDGDPKLERISSFHLG-DIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI  263 (321)
T ss_dssp             EEEEEE-SS-SSTTTTTTBEEEEEEEE-S-S-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred             EEEEEECCCCcccccccccceeEEEEECC-CccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence            99987752       2  22222221211 235555   4444  12      2488888999998543

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.002  Score=71.58  Aligned_cols=94  Identities=17%  Similarity=0.370  Sum_probs=73.6

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE-EEEEccCCCeEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN-RVIWSPDGSLFG  424 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~spdg~~la  424 (1102)
                      ...|.-+.|+|.-. |+|++..+|.|.+..++ .+++..                   +.-|...|+ +++|.|||+.||
T Consensus        20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGklla   78 (665)
T KOG4640|consen   20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLA   78 (665)
T ss_pred             ccceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEE
Confidence            35678899999988 69999999999999887 554442                   444566666 999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEc
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS  462 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s  462 (1102)
                      +|-.||+|++-|++++..+...  ...-...|.++-|.
T Consensus        79 Vg~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   79 VGFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD  114 (665)
T ss_pred             EEecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence            9999999999999998866431  22345567777775

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.11  E-value=0.024  Score=67.54  Aligned_cols=148  Identities=11%  Similarity=0.132  Sum_probs=97.5

Q ss_pred             CCcEEEEE-eCCCcEEEEEeecceeeeeecccccc-ceeEEEec-----CCCEEEEEcCCCcEEEEEcCCCcccceeeee
Q 001311          859 DNNIIAIG-MDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSH-----ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQ  931 (1102)
Q Consensus       859 d~~~lasg-~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~-----d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~  931 (1102)
                      +.++|+.- .....|+-.|+..|+.+..+..|... |..++-..     +...-+.|-.+..+..||.+-...   .+..
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~---k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN---KLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC---ceee
Confidence            44454443 35678999999999999999888754 55443221     123344566677799999875321   1111


Q ss_pred             cCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          932 IPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       932 ~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                      .............+++-+.+|...+.+.+|.||+||-- |..-++..+ +-..+|.+|+.+.||+||++.+ +..+.+++
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~~AKT~lp-~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~  645 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GKRAKTALP-GLGDPIIGIDVTADGKWILATC-KTYLLLID  645 (794)
T ss_pred             ccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-chhhhhcCC-CCCCCeeEEEecCCCcEEEEee-cceEEEEE
Confidence            11111122245678888888887777899999999954 333333332 5578999999999999988665 67788877


Q ss_pred             c
Q 001311         1012 A 1012 (1102)
Q Consensus      1012 ~ 1012 (1102)
                      .
T Consensus       646 t  646 (794)
T PF08553_consen  646 T  646 (794)
T ss_pred             E
Confidence            5

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.08  E-value=0.18  Score=54.29  Aligned_cols=223  Identities=13%  Similarity=0.139  Sum_probs=125.1

Q ss_pred             ecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee--------
Q 001311          815 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--------  886 (1102)
Q Consensus       815 s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l--------  886 (1102)
                      ...++.|+.|.++.+.+++........... +...|..+...+ +-+.|++-+ |+.++++++..-......        
T Consensus         4 ~~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    4 DSWGDRLLVGTEDGLYVYDLSDPSKPTRIL-KLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             ccCCCEEEEEECCCEEEEEecCCccceeEe-ecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            346778888884449999983322222222 233399999998 555555443 599999998764333210        


Q ss_pred             ------ccccccceeEE--EecCC-CEEEEEcCCCcEEEEEcCCCccc---ceeeeecCCCCCCCCCCCcEEEEccCCcE
Q 001311          887 ------KGHSKRITGLA--FSHAL-NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTGRTPTAQSDTRVQFHQDQIH  954 (1102)
Q Consensus       887 ------~~h~~~V~~l~--~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~spdg~~  954 (1102)
                            ......+...+  -...+ ..|+.+ ...+|.+|........   ...-+...       ..+..++|.  +..
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp-------~~~~~i~~~--~~~  150 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLP-------DPPSSIAFL--GNK  150 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcC-------CCcEEEEEe--CCE
Confidence                  01122233333  11233 444444 4558999888764221   11112222       367888888  677


Q ss_pred             EEEEeCCeEEEEEcCCceEeeeeccCCC----------CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEE--EeC
Q 001311          955 FLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC--RIN 1022 (1102)
Q Consensus       955 l~~~~d~~i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~--~~~ 1022 (1102)
                      ++++..+...+.|+.++.....+.....          ..++..+... ++.+|++-  |..-...|. .|+...  .+.
T Consensus       151 i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~  226 (275)
T PF00780_consen  151 ICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQ  226 (275)
T ss_pred             EEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEE
Confidence            7888788899999998776555432211          2234444443 45666643  333333343 443332  222


Q ss_pred             CCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1023 PSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1023 ~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                          ..       ..|.++.+..   .+|+..+. +.|.||++.+++
T Consensus       227 ----W~-------~~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~  258 (275)
T PF00780_consen  227 ----WS-------SAPQSVAYSS---PYLIAFSS-NSIEVRSLETGE  258 (275)
T ss_pred             ----cC-------CchhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence                11       1244677753   46666554 559999999987

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.06  E-value=0.17  Score=54.28  Aligned_cols=231  Identities=13%  Similarity=0.060  Sum_probs=131.8

Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCe
Q 001311          352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  431 (1102)
Q Consensus       352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  431 (1102)
                      -.|.|++..|+.+.-..+.|.-|+..+++...                    +. +.+.+.++..-.++..|+++.  .-
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~--~g   86 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE--HG   86 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc--cc
Confidence            35777777778888888999999998775542                    11 122334444444555555543  33


Q ss_pred             EEEEEccCCceeeeEEEee-cc-ccCEEEEEEcCCCCeeEEEEecC------C---CcEEEEeCC-CCeeeEEeecCCCC
Q 001311          432 VQIYSYHGGDEVRQHLEID-AH-VGGVNDIAFSHPNKQLCVITCGD------D---KTIKVWDAT-NGAKQYIFEGHEAP  499 (1102)
Q Consensus       432 v~vwd~~~~~~~~~~~~l~-~h-~~~V~~v~~s~d~~~~~l~s~~~------d---~~i~vWd~~-~~~~~~~~~~h~~~  499 (1102)
                      +.+++.+++..+..+.... +. ...-+.+...|+|.  +.++.-.      +   ..-.+|-+. .+..++.+..+-..
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~  164 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI  164 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence            6677776665433222211 11 13556788899998  3333222      0   112344444 57777777766666


Q ss_pred             eEEEeeeecCCccEEEEEe-CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          500 VYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      -+.++|++  |++.++.+. ..+.|.-|++......    .... ..         ........+..-.++++.+|++.+
T Consensus       165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~----~~~~-~~---------~~~~~~~~G~PDG~~vDadG~lw~  228 (307)
T COG3386         165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGP----IGGR-RG---------FVDFDEEPGLPDGMAVDADGNLWV  228 (307)
T ss_pred             cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCc----cCCc-ce---------EEEccCCCCCCCceEEeCCCCEEE
Confidence            78899854  445555554 4578887877631100    0000 00         011111122333466777777775


Q ss_pred             EEeCCC-eEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001311          579 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN  626 (1102)
Q Consensus       579 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~  626 (1102)
                      ++..+| .|.+|+.+ |+.+..+....  ..+.+++|-- +.+.|++.+.
T Consensus       229 ~a~~~g~~v~~~~pd-G~l~~~i~lP~--~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         229 AAVWGGGRVVRFNPD-GKLLGEIKLPV--KRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             ecccCCceEEEECCC-CcEEEEEECCC--CCCccceEeCCCcCEEEEEec
Confidence            544443 99999998 88888887663  2577788854 5566655544

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.0089  Score=65.06  Aligned_cols=150  Identities=12%  Similarity=0.126  Sum_probs=96.5

Q ss_pred             CeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEE-----EEEeCCCeEEEEEcCCCCCeeeecCC
Q 001311          466 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-----FSTALDGKIKAWLYDNLGSRVDYEAP  540 (1102)
Q Consensus       466 ~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-----~s~s~dg~i~~wd~~~~~~~~~~~~~  540 (1102)
                      ..+++.++.....++--|++.|+.+..+.-|.. |+-+.+.++..+..+     +.|-.|..|.-||.+-....      
T Consensus       345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~------  417 (644)
T KOG2395|consen  345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN------  417 (644)
T ss_pred             cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc------
Confidence            334677788888899999999999999987766 555555444433332     34556788999998743321      


Q ss_pred             CCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE
Q 001311          541 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL  620 (1102)
Q Consensus       541 ~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  620 (1102)
                           -+++...  ..+  .++..+.|.+-..+| ++++|+.+|.||+||--...-...+++-+.  .|..|..+.+|++
T Consensus       418 -----kl~~~q~--kqy--~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~--~I~hVdvtadGKw  485 (644)
T KOG2395|consen  418 -----KLAVVQS--KQY--STKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGD--AIKHVDVTADGKW  485 (644)
T ss_pred             -----eeeeeec--ccc--ccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCC--ceeeEEeeccCcE
Confidence                 0011000  000  112234444444443 699999999999999743333445555544  7999999999999


Q ss_pred             EEEEECCCcEEEEEc
Q 001311          621 LAVSTNDNGIKILAT  635 (1102)
Q Consensus       621 l~~~~~dg~i~iwd~  635 (1102)
                      |++.+. ..+.+.++
T Consensus       486 il~Tc~-tyLlLi~t  499 (644)
T KOG2395|consen  486 ILATCK-TYLLLIDT  499 (644)
T ss_pred             EEEecc-cEEEEEEE
Confidence            987664 56666664

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.98  E-value=0.15  Score=56.73  Aligned_cols=91  Identities=19%  Similarity=0.304  Sum_probs=61.3

Q ss_pred             EEEEccCCCeEEEEECCCeEEE---EEccC-C--ce---eeeEEEeeccc-cCEEEEEEcC-----------CCCeeEEE
Q 001311          413 RVIWSPDGSLFGVAYSRHIVQI---YSYHG-G--DE---VRQHLEIDAHV-GGVNDIAFSH-----------PNKQLCVI  471 (1102)
Q Consensus       413 ~l~~spdg~~las~~~d~~v~v---wd~~~-~--~~---~~~~~~l~~h~-~~V~~v~~s~-----------d~~~~~l~  471 (1102)
                      .++.+|++++||.+..+..+.+   |+... +  ..   +.-...+.... ..|+++.|-|           |..  +++
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~--~I~   83 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWT--CIA   83 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcE--EEE
Confidence            4688999999999988887666   64421 1  11   11111122111 4677766543           334  899


Q ss_pred             EecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeee
Q 001311          472 TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  506 (1102)
Q Consensus       472 s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~  506 (1102)
                      .|..+|.|++|. ++|..+..-.-|..+|..+...
T Consensus        84 VG~ssG~vrfyt-e~G~LL~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   84 VGTSSGYVRFYT-ENGVLLLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             EEecccEEEEEe-ccchHHHHHhcCccceEEEEec
Confidence            999999999999 6888876666689999988754

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.95  E-value=0.13  Score=51.85  Aligned_cols=234  Identities=15%  Similarity=0.114  Sum_probs=134.5

Q ss_pred             eEEEEecCCC-eEEEEe-CCe-EEEEEcCCCceeeeecCCCCC--eeEEEEecCCCcEEEEEeCC-----CcEEEEEeec
Q 001311          810 PCFALSKNDS-YVMSAS-GGK-ISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV  879 (1102)
Q Consensus       810 ~~l~~s~d~~-~las~s-dg~-I~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~  879 (1102)
                      ..|+++|.-. -++.+. -|+ ..++|..+.+...++...++.  --.=.||| ||.+|...-.|     |.|-|||...
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~  149 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDARE  149 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEeccc
Confidence            4567777544 344444 344 778998887776665433322  12236899 89888765433     6899999875


Q ss_pred             c-eeeeeeccccccceeEEEecCCCEEEEEcC------C------------CcEEEEEcCCCcccceeeeecCCCCCCCC
Q 001311          880 D-EVKSKLKGHSKRITGLAFSHALNVLVSSGA------D------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTA  940 (1102)
Q Consensus       880 ~-~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~------D------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~  940 (1102)
                      + ..+.++..|.-.--.|.|.+||+.|+.+..      |            -.+.+.|..+++...+..+.....+    
T Consensus       150 ~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----  225 (366)
T COG3490         150 GFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----  225 (366)
T ss_pred             ccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----
Confidence            3 456677777766677999999999998743      1            1233334334433332222211111    


Q ss_pred             CCCcEEEEccCCcEEEEE-eCC-----eEEEEEcCCceEeeeeccC-----CCCCCeeEEEEcCCCcEEEEEeCC-CeEE
Q 001311          941 QSDTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPR-----ESSAPITHATFSCDSQLVYACFLD-ATVC 1008 (1102)
Q Consensus       941 ~~v~~~~~spdg~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~-----~h~~~v~~l~~spd~~~l~s~s~D-g~I~ 1008 (1102)
                      .++..++..+||+.++.+ ..|     ---+=....++.+..+...     .-...|-+++...+..+++..+-. +...
T Consensus       226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~v  305 (366)
T COG3490         226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAV  305 (366)
T ss_pred             cceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEE
Confidence            367888888998877764 222     1111111222222222111     114467788888777776655544 5678


Q ss_pred             EEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEE
Q 001311         1009 VFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1063 (1102)
Q Consensus      1009 vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW 1063 (1102)
                      +||..+|..+....    +++.   .     .+.-.   ..-++..+.+|.+.++
T Consensus       306 i~da~tG~vv~~a~----l~da---a-----Gva~~---~~gf~vssg~G~~~~~  345 (366)
T COG3490         306 IWDAATGAVVSEAA----LPDA---A-----GVAAA---KGGFAVSSGQGRIIFY  345 (366)
T ss_pred             EEEcCCCcEEeccc----cccc---c-----cceec---cCceEEecCCceEEec
Confidence            99999999886544    2221   1     22222   2334445668887766

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.81  E-value=2.1  Score=52.24  Aligned_cols=213  Identities=15%  Similarity=0.082  Sum_probs=116.0

Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeecccc------CEEEEEEcC----------------CCCeeEEEEecCCC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG------GVNDIAFSH----------------PNKQLCVITCGDDK  477 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~------~V~~v~~s~----------------d~~~~~l~s~~~d~  477 (1102)
                      +..|..++.++.|.-.|.++|+.+-+... .....      ....+++-.                ++.  .++.++.|+
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg  270 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA  270 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence            56677777788888888888876543211 11000      011122211                233  477788899


Q ss_pred             cEEEEeCCCCeeeEEeecCCCCeE-------------EEeeeecCCccEEEEEeC----------CCeEEEEEcCCCCCe
Q 001311          478 TIKVWDATNGAKQYIFEGHEAPVY-------------SVCPHHKENIQFIFSTAL----------DGKIKAWLYDNLGSR  534 (1102)
Q Consensus       478 ~i~vWd~~~~~~~~~~~~h~~~v~-------------~v~~~~~~~~~~l~s~s~----------dg~i~~wd~~~~~~~  534 (1102)
                      .+.-.|.++|+.+..+. ..+.|.             .+.-.+--.+..++.|+.          +|.|+-+|..+++..
T Consensus       271 ~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~  349 (764)
T TIGR03074       271 RLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV  349 (764)
T ss_pred             eEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence            99999999999997764 222221             000000001135666642          688999999999988


Q ss_pred             eeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE------------------eCCCeEEEEECCCcce
Q 001311          535 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA------------------GDDFSIKFWDMDSVQL  596 (1102)
Q Consensus       535 ~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~dg~i~iwd~~~~~~  596 (1102)
                      ..+..........  ...+. .+.......-...++++..+.++.+                  ...+.|.-.|+++|+.
T Consensus       350 W~~~~g~p~~~~~--~~~g~-~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~  426 (764)
T TIGR03074       350 WAWDPGNPDPTAP--PAPGE-TYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKE  426 (764)
T ss_pred             eEEecCCCCcccC--CCCCC-EeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCce
Confidence            8765321111100  01121 1211111111233444443333321                  1245677889999998


Q ss_pred             EEEEcCCCCC-------CCcCeEEEcC-CCC---EEEEEECCCcEEEEEccCCc
Q 001311          597 LTSIDADGGL-------PASPRIRFNK-DGC---LLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       597 ~~~~~~~~~~-------~~v~~~~~s~-~~~---~l~~~~~dg~i~iwd~~~~~  639 (1102)
                      ...++...|.       ....-+.+.. +|+   .++.++.+|.+.++|.++++
T Consensus       427 ~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  480 (764)
T TIGR03074       427 RWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE  480 (764)
T ss_pred             EEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence            8887653221       0011122322 553   78999999999999999994

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>smart00320 WD40 WD40 repeats

Probab=96.76  E-value=0.0027  Score=43.63  Aligned_cols=39  Identities=33%  Similarity=0.559  Sum_probs=34.3

Q ss_pred             ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311          880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  918 (1102)
                      +++...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345666778899999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.0057  Score=68.08  Aligned_cols=92  Identities=14%  Similarity=0.265  Sum_probs=77.7

Q ss_pred             CCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCee-EEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          806 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT-FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~-~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      ...+.-+.|+|.-..+|.+. +|.|.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++-|+.++..+
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l   97 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL   97 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence            45678899999999999998 8999999988 888899987777777 999999 8999999999999999999998766


Q ss_pred             eee-ccccccceeEEEe
Q 001311          884 SKL-KGHSKRITGLAFS  899 (1102)
Q Consensus       884 ~~l-~~h~~~V~~l~~s  899 (1102)
                      ... -.-...|.++.|+
T Consensus        98 ~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   98 VSFLFSVETDISKGIWD  114 (665)
T ss_pred             eccccccccchheeecc
Confidence            552 2234567777775

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.72  E-value=0.99  Score=48.18  Aligned_cols=159  Identities=11%  Similarity=0.067  Sum_probs=80.1

Q ss_pred             cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcC-CC
Q 001311          844 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GW  922 (1102)
Q Consensus       844 ~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~  922 (1102)
                      ..-.+.+..+..++ |+++++++..-....-||-....-...-..-+.+|.+|.|.||+.+.+.+ ..|.|+.=+.. ..
T Consensus       141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~  218 (302)
T PF14870_consen  141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG  218 (302)
T ss_dssp             -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred             cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence            34456788888888 99999887655455567643211111122245789999999998776654 78888877622 11


Q ss_pred             cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeec-cCCCCCCeeEEEEcCCCcEEEEE
Q 001311          923 EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus       923 ~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
                      +.-.........    ....+..++|.+++...+++..|.+. ...+.|+--..-. ...-....+.+.|.++.+-++.|
T Consensus       219 ~~w~~~~~~~~~----~~~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG  293 (302)
T PF14870_consen  219 ETWSEPIIPIKT----NGYGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG  293 (302)
T ss_dssp             EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred             cccccccCCccc----CceeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEEC
Confidence            110000011111    11347899999999998888877553 3444444322211 11224568889998776666655


Q ss_pred             eCCCeEEEE
Q 001311         1002 FLDATVCVF 1010 (1102)
Q Consensus      1002 s~Dg~I~vw 1010 (1102)
                       .||.|--|
T Consensus       294 -~~G~ll~~  301 (302)
T PF14870_consen  294 -QDGVLLRY  301 (302)
T ss_dssp             -STTEEEEE
T ss_pred             -CCcEEEEe
Confidence             68887655

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.021  Score=67.66  Aligned_cols=104  Identities=17%  Similarity=0.226  Sum_probs=79.2

Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  498 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~  498 (1102)
                      -+..+|.|+..|.|-..|+.+.  +++...-..-.++|++++|+.||+  .++.|-.+|.|.+||+..++.++.+..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            4667899999999999998774  222111222357999999999999  788899999999999999999999988888


Q ss_pred             CeEEEeeee-cCCccEEEEEeCCCeEEEEEc
Q 001311          499 PVYSVCPHH-KENIQFIFSTALDGKIKAWLY  528 (1102)
Q Consensus       499 ~v~~v~~~~-~~~~~~l~s~s~dg~i~~wd~  528 (1102)
                      +.+++-++. ..++..++++..-|.  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            887775433 333446777777776  4654

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.63  E-value=0.94  Score=49.85  Aligned_cols=111  Identities=20%  Similarity=0.259  Sum_probs=58.7

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC----CCeE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD----GSLF  423 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd----g~~l  423 (1102)
                      ..++|+|.|||+ +++ +...|.|++.+ ..+.....  +.  +        ...+..........++|+|+    +.+.
T Consensus         3 ~P~~~a~~pdG~-l~v-~e~~G~i~~~~-~~g~~~~~--v~--~--------~~~v~~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    3 NPRSMAFLPDGR-LLV-AERSGRIWVVD-KDGSLKTP--VA--D--------LPEVFADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SEEEEEEETTSC-EEE-EETTTEEEEEE-TTTEECEE--EE--E---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CceEEEEeCCCc-EEE-EeCCceEEEEe-CCCcCcce--ec--c--------cccccccccCCcccceeccccCCCCEEE
Confidence            568999999998 354 46689999999 44543110  00  0        01234555678899999994    4444


Q ss_pred             EEEECC--------CeEEEEEccCC-cee---eeEE-Eeec---cccCEEEEEEcCCCCeeEEEEec
Q 001311          424 GVAYSR--------HIVQIYSYHGG-DEV---RQHL-EIDA---HVGGVNDIAFSHPNKQLCVITCG  474 (1102)
Q Consensus       424 as~~~d--------~~v~vwd~~~~-~~~---~~~~-~l~~---h~~~V~~v~~s~d~~~~~l~s~~  474 (1102)
                      ++.+..        ..|.-|....+ ..+   +.+. .+..   ....-..|+|.|||. +++.+|+
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~  133 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGD  133 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCC
Confidence            443321        24555555544 111   1111 1121   233456799999996 3444443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.61  E-value=0.23  Score=50.87  Aligned_cols=190  Identities=12%  Similarity=0.120  Sum_probs=117.9

Q ss_pred             eeEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeeeecccc-ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccc
Q 001311          850 ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK  926 (1102)
Q Consensus       850 i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~  926 (1102)
                      ...+.|.. ++.++-+.+.-|  .|+.+|+.+++......-.. ----.++...| +...-.=.++...+||..+-+...
T Consensus        47 TQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~~~~  124 (264)
T PF05096_consen   47 TQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLKKIG  124 (264)
T ss_dssp             EEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSEEEEEETTTTEEEE
T ss_pred             CccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCeEEEEccccceEEE
Confidence            56788866 788888888777  89999999988765443211 11123444422 333334467889999998865543


Q ss_pred             eeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCC---CeeEEEEcCCCcEEEEEe
Q 001311          927 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHATFSCDSQLVYACF 1002 (1102)
Q Consensus       927 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~~spd~~~l~s~s 1002 (1102)
                      ....  . +      .=..++  .||+.|+.+ ....++.+|..+.+..+.+.......   .++-+.|- +|...|=.=
T Consensus       125 ~~~y--~-~------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW  192 (264)
T PF05096_consen  125 TFPY--P-G------EGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW  192 (264)
T ss_dssp             EEE---S-S------S--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET
T ss_pred             EEec--C-C------cceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC
Confidence            3222  1 1      114444  677777775 67789999999888877765433333   45556665 777777666


Q ss_pred             CCCeEEEEEcCCceeEEEeCCCcccCCCC-------CCCcccceEEEecCCCCCEEEEEe
Q 001311         1003 LDATVCVFSAANLKLRCRINPSAYLPAGV-------SSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus      1003 ~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh-------~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
                      ....|..-|..+|+.+..+..+...+...       .....+  .|+|.|..+.+++||=
T Consensus       193 ~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLN--GIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  193 QTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLN--GIAYDPETDRLFVTGK  250 (264)
T ss_dssp             TSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EE--EEEEETTTTEEEEEET
T ss_pred             CCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeE--eEeEeCCCCEEEEEeC
Confidence            67778888999999999887555443210       012234  8999998777888873

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.59  E-value=0.47  Score=48.66  Aligned_cols=198  Identities=14%  Similarity=0.188  Sum_probs=121.2

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc-ccCCCCCCCCeeEEEEec
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~i~~l~~s~  816 (1102)
                      -...+.++.|+|+.+.|++..+.....||=-                      .+|.++.. .+.+   -.....+.+..
T Consensus        84 ~~~nvS~LTynp~~rtLFav~n~p~~iVElt----------------------~~GdlirtiPL~g---~~DpE~Ieyig  138 (316)
T COG3204          84 ETANVSSLTYNPDTRTLFAVTNKPAAIVELT----------------------KEGDLIRTIPLTG---FSDPETIEYIG  138 (316)
T ss_pred             ccccccceeeCCCcceEEEecCCCceEEEEe----------------------cCCceEEEecccc---cCChhHeEEec
Confidence            4455999999999999999988766555421                      33443332 2222   33456678888


Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeeeec---------CC-CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce---e
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMATFM---------PP-PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---V  882 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~~~---------~~-~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~  882 (1102)
                      +|+++++-. ++.+.++.+.....+..+.         .+ ......++|+| ....|..+-+-.-+.||.+....   .
T Consensus       139 ~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l~  217 (316)
T COG3204         139 GNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSLS  217 (316)
T ss_pred             CCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCcccc
Confidence            888887776 7888888876543322111         12 45678899999 56666667777777777765322   1


Q ss_pred             eeeeccc-------cccceeEEEecC-CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC---CCCCCcEEEEccC
Q 001311          883 KSKLKGH-------SKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP---TAQSDTRVQFHQD  951 (1102)
Q Consensus       883 ~~~l~~h-------~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~spd  951 (1102)
                      ......+       -..|.++.|.+. +.+||-+.+++.+.-.|....-.   ..+....|...   .......+++.++
T Consensus       218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~---~~lsL~~g~~gL~~dipqaEGiamDd~  294 (316)
T COG3204         218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVI---ELLSLTKGNHGLSSDIPQAEGIAMDDD  294 (316)
T ss_pred             cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCee---eeEEeccCCCCCcccCCCcceeEECCC
Confidence            1111122       234677888754 56777777888888888766432   12222222221   1123467888888


Q ss_pred             CcEEEEEeCCeEE
Q 001311          952 QIHFLVVHETQLA  964 (1102)
Q Consensus       952 g~~l~~~~d~~i~  964 (1102)
                      |...+++.-+..+
T Consensus       295 g~lYIvSEPnlfy  307 (316)
T COG3204         295 GNLYIVSEPNLFY  307 (316)
T ss_pred             CCEEEEecCCcce
Confidence            8877776544333

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.072  Score=58.36  Aligned_cols=144  Identities=10%  Similarity=0.126  Sum_probs=98.8

Q ss_pred             EEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCE--E-----EEEcCCCcEEEEEcCCCcccceeeeecCC
Q 001311          862 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNV--L-----VSSGADSQLCVWSSDGWEKQKNRFLQIPT  934 (1102)
Q Consensus       862 ~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~--l-----~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~  934 (1102)
                      +|..+..-..++--|++.|+.+..++-|.. |+-+.+.|+.+.  |     +.|-.|..|+-||..-....   .+...+
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~---kl~~~q  423 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN---KLAVVQ  423 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc---eeeeee
Confidence            445556666888889999999999998877 888888887532  2     23445777999998743221   233333


Q ss_pred             CCCC-CCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311          935 GRTP-TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus       935 ~~~~-~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
                      ++.- ....-.+.+-..+|..++.+.+|.|++||- .+...++..+ +-..+|..+..+.||++|+..+ +.++.+-++
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlP-gLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALP-GLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccc-ccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            3321 113345666666777666679999999998 5555444432 5688999999999999988665 666666664

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.52  E-value=1  Score=50.21  Aligned_cols=40  Identities=10%  Similarity=-0.130  Sum_probs=34.4

Q ss_pred             CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          983 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      ...+.+++.+|++++.|+...=|.|.++|+.++..++.++
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWK  346 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhc
Confidence            4568899999999988888777999999999998877665

>PHA02713 hypothetical protein; Provisional

Probab=96.46  E-value=0.27  Score=58.35  Aligned_cols=222  Identities=12%  Similarity=0.064  Sum_probs=113.5

Q ss_pred             eEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCC------CcEEEEEeeccee--eeeeccccccceeEE
Q 001311          828 KISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDEV--KSKLKGHSKRITGLA  897 (1102)
Q Consensus       828 ~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~~--~~~l~~h~~~V~~l~  897 (1102)
                      .+..||..+.+-.  ..+..... -.+++. - ++.++++|+.+      ..+..||..++.-  +..+.......  .+
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~-l-~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~--~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHII-NYASAI-V-DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF--SL  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCcccc-ceEEEE-E-CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce--eE
Confidence            4667777664322  12221111 122333 2 67788888854      3577888776532  22222111111  22


Q ss_pred             EecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC-----------
Q 001311          898 FSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----------  960 (1102)
Q Consensus       898 ~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d-----------  960 (1102)
                      ..-+|+..+.||.++     ++..||..+.+-   ..........   .....  ..-+|+..+.| .+           
T Consensus       348 ~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W---~~~~~mp~~r---~~~~~--~~~~g~IYviGG~~~~~~~~~~~~~  419 (557)
T PHA02713        348 AVIDDTIYAIGGQNGTNVERTIECYTMGDDKW---KMLPDMPIAL---SSYGM--CVLDQYIYIIGGRTEHIDYTSVHHM  419 (557)
T ss_pred             EEECCEEEEECCcCCCCCCceEEEEECCCCeE---EECCCCCccc---ccccE--EEECCEEEEEeCCCccccccccccc
Confidence            233778888888764     378899876432   2211111110   01111  22356666664 22           


Q ss_pred             ------------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC------CeEEEEEcCC-ceeEEEe
Q 001311          961 ------------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD------ATVCVFSAAN-LKLRCRI 1021 (1102)
Q Consensus       961 ------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D------g~I~vwd~~~-~~~~~~~ 1021 (1102)
                                  ..+..||..+.+....-...  ......-+..-+|+..+.|+.+      ..|..||.++ .+-...-
T Consensus       420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~  497 (557)
T PHA02713        420 NSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT  497 (557)
T ss_pred             ccccccccccccceEEEECCCCCeEeecCCCC--cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence                        35778998887654332211  1111111223367777777754      2467898887 4332211


Q ss_pred             CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCC--cEEEEeccCCCcccccCCC
Q 001311         1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG--GVHVFEPLESEGKWGVPPP 1077 (1102)
Q Consensus      1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg--~v~vW~~~~~~~~~~~~~~ 1077 (1102)
                      .    ++..     ....+++-.  ++.+.++|+.||  ++..+|+.+.+  |..-.|
T Consensus       498 ~----m~~~-----r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~--W~~~~~  542 (557)
T PHA02713        498 T----TESR-----LSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE--WNHICH  542 (557)
T ss_pred             c----cCcc-----cccceeEEE--CCEEEEEeeecceeehhhcCccccc--ccchhh
Confidence            1    2211     111122222  578999999998  78888887766  666554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.45  E-value=0.19  Score=43.76  Aligned_cols=102  Identities=15%  Similarity=0.159  Sum_probs=66.4

Q ss_pred             eEEEEEcc-CC---CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311          411 VNRVIWSP-DG---SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  486 (1102)
Q Consensus       411 V~~l~~sp-dg---~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~  486 (1102)
                      |++|++.. ||   +.|++|+.|..|+||+-+.  .+.   ++. -.+.|++++-...++   ++.+-.+|+|-+|+-  
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~--   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDR--   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeC--
Confidence            66777766 33   5899999999999998654  333   233 246788888777654   888889999999973  


Q ss_pred             CeeeEEeecCCCCeEEEee-eecCCc-cEEEEEeCCCeEE
Q 001311          487 GAKQYIFEGHEAPVYSVCP-HHKENI-QFIFSTALDGKIK  524 (1102)
Q Consensus       487 ~~~~~~~~~h~~~v~~v~~-~~~~~~-~~l~s~s~dg~i~  524 (1102)
                      ...+...+... .+.++++ ....+| .-|++|-.+|.|-
T Consensus        71 ~~RlWRiKSK~-~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 SQRLWRIKSKN-QVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             cceeeeeccCC-CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            33344444322 3555553 223222 2578887778763

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.42  E-value=1.3  Score=45.67  Aligned_cols=186  Identities=9%  Similarity=0.116  Sum_probs=114.4

Q ss_pred             CCeeEEEEecCCCeEEEEe-C--CeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311          807 EAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  882 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-d--g~I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  882 (1102)
                      .-...+.|..+|.++-+.+ -  ..|+.+|+.+++......-... --..++..  ++++....-.++...+||..+.+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence            3356788878888777766 3  4699999999987765442222 12344444  456677777899999999999888


Q ss_pred             eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCC
Q 001311          883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  961 (1102)
Q Consensus       883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~  961 (1102)
                      +.++.- .+.=+.|+  .|++.|+..+....|.++|.++.+..+.  +.+.....+ -..+.-+-+- +|...|-. ...
T Consensus       123 ~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~--i~V~~~g~p-v~~LNELE~i-~G~IyANVW~td  195 (264)
T PF05096_consen  123 IGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRT--IQVTDNGRP-VSNLNELEYI-NGKIYANVWQTD  195 (264)
T ss_dssp             EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEE--EE-EETTEE----EEEEEEE-TTEEEEEETTSS
T ss_pred             EEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEE--EEEEECCEE-CCCcEeEEEE-cCEEEEEeCCCC
Confidence            888753 35567777  4677777776677799999887654332  222221111 1123344443 56655554 677


Q ss_pred             eEEEEEcCCceEeeeeccC----------CC---CCCeeEEEEcCCCcEE-EEE
Q 001311          962 QLAIFETTKLECVKQWVPR----------ES---SAPITHATFSCDSQLV-YAC 1001 (1102)
Q Consensus       962 ~i~iwd~~~~~~~~~~~~~----------~h---~~~v~~l~~spd~~~l-~s~ 1001 (1102)
                      .|...|..+|+.+..+...          .+   ..-.+.||+.|+...| +||
T Consensus       196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            8888999999988765321          01   3457899998866655 454

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.40  E-value=2.3  Score=47.64  Aligned_cols=289  Identities=13%  Similarity=0.098  Sum_probs=153.2

Q ss_pred             CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-----CCCeEEEEe
Q 001311          751 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-----NDSYVMSAS  825 (1102)
Q Consensus       751 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-----d~~~las~s  825 (1102)
                      ...+++|+..|.++||+.....+.+..-.+..                     .-..+|..+....     +...||+-.
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~---------------------~l~~PILqv~~G~F~s~~~~~~LaVLh   95 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET---------------------QLKDPILQVECGKFVSGSEDLQLAVLH   95 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEE---------------------ecCCcEEEEEeccccCCCCcceEEEec
Confidence            35688999999999998744333222111111                     1345566555432     344666666


Q ss_pred             CCeEEEEEcCC--Cc-------eeeeecCCCC--CeeEEEEecC----CCcEEEEEeCCCcEEEEEeecceeeeeecccc
Q 001311          826 GGKISLFNMMT--FK-------TMATFMPPPP--AATFLAFHPQ----DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS  890 (1102)
Q Consensus       826 dg~I~iwd~~~--~~-------~~~~~~~~~~--~i~~l~~sp~----d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~  890 (1102)
                      -..+.||.+..  +.       .+..+..|.-  ....+++-|-    +..+|.+-+-||.+.+|+-+.......+.+ .
T Consensus        96 P~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~  174 (418)
T PF14727_consen   96 PRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-F  174 (418)
T ss_pred             CCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-C
Confidence            77788887631  11       1122222321  2222333221    246888999999999999776544444443 2


Q ss_pred             ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceee-------eecCCCCCC----------CCCCCcEEEEccCCc
Q 001311          891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF-------LQIPTGRTP----------TAQSDTRVQFHQDQI  953 (1102)
Q Consensus       891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~-------~~~~~~~~~----------~~~~v~~~~~spdg~  953 (1102)
                      ---..++|.+.-..+++++.+..+..|....-.......       .....+...          ..-.+..+.++....
T Consensus       175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~  254 (418)
T PF14727_consen  175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSES  254 (418)
T ss_pred             CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCc
Confidence            222347888888999999999889888753210000000       000000000          001122233333444


Q ss_pred             EEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEE-E----cCCC---cEEEEEeCCCeEEEEEcCCceeEEEeCCCc
Q 001311          954 HFLVVHETQLAIFETTKLECVKQWVPRESSAPITHAT-F----SCDS---QLVYACFLDATVCVFSAANLKLRCRINPSA 1025 (1102)
Q Consensus       954 ~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~-~----spd~---~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~ 1025 (1102)
                      .+++-.+..+...+- +|......+.+.   ...+++ |    ..++   ..++.++.++++.||.=.+  ++-.-.   
T Consensus       255 ~IvvLger~Lf~l~~-~G~l~~~krLd~---~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~--L~WsA~---  325 (418)
T PF14727_consen  255 DIVVLGERSLFCLKD-NGSLRFQKRLDY---NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT--LVWSAQ---  325 (418)
T ss_pred             eEEEEecceEEEEcC-CCeEEEEEecCC---ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe--EEEecC---
Confidence            455556667777665 345544443322   222221 1    1222   2478889999999987433  332222   


Q ss_pred             ccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccccCC
Q 001311         1026 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPP 1076 (1102)
Q Consensus      1026 ~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~ 1076 (1102)
                       ++..    .| .+.++..++-...|++-+.+|.+.+-=+-|.......++
T Consensus       326 -l~~~----PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~  370 (418)
T PF14727_consen  326 -LPHV----PV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPP  370 (418)
T ss_pred             -CCCC----CE-EEEecccCCCCceEEEEcCCCcEEEEEeCCCCccccCCC
Confidence             1111    02 223333333456899999999999998877664444433

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=96.33  E-value=0.0028  Score=58.67  Aligned_cols=78  Identities=21%  Similarity=0.308  Sum_probs=64.5

Q ss_pred             hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC----chhHH---HHHH
Q 001311           60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD----TKSAR---SIML  132 (1102)
Q Consensus        60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~~~~R---~~l~  132 (1102)
                      ++|+|+.+.||||+..|..++|..++.+.-..+...+.+++++|+.+.+..++.+++....+++    ...+|   ..|+
T Consensus        29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~  108 (133)
T cd08044          29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL  108 (133)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence            9999999999999999999999999998766666668999999999999998888887776665    23344   5666


Q ss_pred             HHHHh
Q 001311          133 VELKK  137 (1102)
Q Consensus       133 ~~l~~  137 (1102)
                      ..|++
T Consensus       109 ~~L~~  113 (133)
T cd08044         109 RFLES  113 (133)
T ss_pred             HHHHH
Confidence            66665

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>smart00320 WD40 WD40 repeats

Probab=96.32  E-value=0.0076  Score=41.25  Aligned_cols=38  Identities=26%  Similarity=0.470  Sum_probs=33.0

Q ss_pred             ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311          838 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  876 (1102)
Q Consensus       838 ~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  876 (1102)
                      +....+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence            45566777888999999999 779999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PRK10115 protease 2; Provisional

Probab=96.31  E-value=2.5  Score=51.56  Aligned_cols=195  Identities=10%  Similarity=0.045  Sum_probs=101.1

Q ss_pred             CCeeEEEEecCCCeEEEEeC--C----eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC------CcEEE
Q 001311          807 EAVPCFALSKNDSYVMSASG--G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQI  874 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~sd--g----~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~v  874 (1102)
                      -.+..+.++||+++|+.+.|  |    .|++.|+.++..+...-...  -..++|++ |++.|+....+      ..|+.
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~-D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWAN-DSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEee-CCCEEEEEEecCCCCCCCEEEE
Confidence            34667889999999998763  3    48999998876432221111  14599999 66655544332      36888


Q ss_pred             EEeecc--eeeeeeccccccce-eEEEecCCCEEEEEcC---CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEE
Q 001311          875 YNVRVD--EVKSKLKGHSKRIT-GLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  948 (1102)
Q Consensus       875 wd~~~~--~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  948 (1102)
                      +++.++  +....+........ .+..+.|+++++..+.   ++.+.+++...........+....+      ....+. 
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~-  276 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD------HEYSLD-  276 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC------CEEEEE-
Confidence            888876  33333333222222 3344558887764433   4568888853311111111111111      112222 


Q ss_pred             ccCCcEEEEEeC----CeEEEEEcCC-ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311          949 HQDQIHFLVVHE----TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus       949 spdg~~l~~~~d----~~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
                      +..+.+.+....    ..|...++.+ ++. ..+........|..+.++ .+.++++...+|.-+++-++
T Consensus       277 ~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~  344 (686)
T PRK10115        277 HYQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQIN  344 (686)
T ss_pred             eCCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEc
Confidence            223333333321    2344445442 222 223322123478888887 44566677778776665544

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.30  E-value=0.25  Score=42.99  Aligned_cols=66  Identities=14%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             EEEEEE---cCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEc
Q 001311          456 VNDIAF---SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  528 (1102)
Q Consensus       456 V~~v~~---s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~  528 (1102)
                      |+++++   ..||.. -|+.|+.|..||||+  ....+..+. ....|.+++-.  .. ..++.+-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~--~~e~~~Ei~-e~~~v~~L~~~--~~-~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFK--GDEIVAEIT-ETDKVTSLCSL--GG-GRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcc-eEEEecCCcEEEEEe--CCcEEEEEe-cccceEEEEEc--CC-CEEEEEecCCEEEEEeC
Confidence            455554   445555 799999999999997  446777776 44567777632  22 57899999999988854

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.27  E-value=1.5  Score=48.15  Aligned_cols=241  Identities=14%  Similarity=0.120  Sum_probs=119.9

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCce---eeee----cCCCCCeeEEEEecC---CCcEEEEEeCC--------
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF----MPPPPAATFLAFHPQ---DNNIIAIGMDD--------  869 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~---~~~~----~~~~~~i~~l~~sp~---d~~~lasg~~d--------  869 (1102)
                      ..++|+|.|||+++++-..|.|++++ ..+..   +..+    .........++++|+   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            36789999999888876699999999 33333   2222    223456889999992   23434433321        


Q ss_pred             CcEEEEEeecc-------e-eeeeecc---ccccceeEEEecCCCEEEEEcCCCc-------------EEEEEcCCCccc
Q 001311          870 SSIQIYNVRVD-------E-VKSKLKG---HSKRITGLAFSHALNVLVSSGADSQ-------------LCVWSSDGWEKQ  925 (1102)
Q Consensus       870 g~v~vwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~-------------i~vwd~~~~~~~  925 (1102)
                      ..|.-|....+       + ++..+..   ....-..|+|.|||.+.++.+..+.             |.-.+....-..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p~  161 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIPA  161 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCCC
Confidence            24444444433       1 1112221   1223356999999988887765443             221222110000


Q ss_pred             ce--------eeeecCCCCCCCCCCCcEEEEccC-CcEEEE--EeCCeEEEEEcCCceEe--------------------
Q 001311          926 KN--------RFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV--VHETQLAIFETTKLECV--------------------  974 (1102)
Q Consensus       926 ~~--------~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~--~~d~~i~iwd~~~~~~~--------------------  974 (1102)
                      ..        .......|+    .....++|+|. |.+.++  +.+..=.|..+..|.-.                    
T Consensus       162 dnP~~~~~~~~~~i~A~Gl----RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~  237 (331)
T PF07995_consen  162 DNPFVGDDGADSEIYAYGL----RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP  237 (331)
T ss_dssp             TSTTTTSTTSTTTEEEE------SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred             CCccccCCCceEEEEEeCC----CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence            00        000000011    13467899999 777776  34433333333332210                    


Q ss_pred             -------eeeccCCCCCCeeEEEEcC-------CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceE
Q 001311          975 -------KQWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1040 (1102)
Q Consensus       975 -------~~~~~~~h~~~v~~l~~sp-------d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1040 (1102)
                             ..+.. .+...+..+.|-.       .|.++++.-..+.|....++++..+....  .++ .   .....++.
T Consensus       238 ~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~-~---~~~~r~~~  310 (331)
T PF07995_consen  238 SCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE--EFL-G---GFGGRPRD  310 (331)
T ss_dssp             S-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE--EEC-T---TSSS-EEE
T ss_pred             CCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE--Ecc-c---cCCCCceE
Confidence                   00001 1235667777753       45566666666788888887553332222  111 1   11124668


Q ss_pred             EEecCCCCCEEEEEecCCcEE
Q 001311         1041 IAAHPQEPNEFALGLSDGGVH 1061 (1102)
Q Consensus      1041 v~f~p~d~~~l~s~~~Dg~v~ 1061 (1102)
                      +++.| ||.+.++...+|.|+
T Consensus       311 v~~~p-DG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  311 VAQGP-DGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEET-TSEEEEEE-TTTTEE
T ss_pred             EEEcC-CCeEEEEECCCCeEe
Confidence            99999 688888888888774

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.26  E-value=2.9  Score=47.34  Aligned_cols=57  Identities=14%  Similarity=0.259  Sum_probs=44.1

Q ss_pred             EEEecCCCEEEEEcCC-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          896 LAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      |+|.|..+.+|.++.- ..|.||.+........+.++...+..     ...++|-.|...|+.
T Consensus       344 iAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ER-----PKGiCFltdklLLil  401 (671)
T PF15390_consen  344 IAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNER-----PKGICFLTDKLLLIL  401 (671)
T ss_pred             eeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCC-----CceeeEccCCeEEEE
Confidence            7999999999999875 46889999876666666666666543     478999888887775

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.24  E-value=0.52  Score=51.58  Aligned_cols=191  Identities=15%  Similarity=0.187  Sum_probs=95.5

Q ss_pred             EEEEecCCCeEEEEe---C----CeEEEEEcCCCceeeeecCCC---CCeeEEEEecCCCcEEEEEe-------------
Q 001311          811 CFALSKNDSYVMSAS---G----GKISLFNMMTFKTMATFMPPP---PAATFLAFHPQDNNIIAIGM-------------  867 (1102)
Q Consensus       811 ~l~~s~d~~~las~s---d----g~I~iwd~~~~~~~~~~~~~~---~~i~~l~~sp~d~~~lasg~-------------  867 (1102)
                      .+-.-|+|++++++-   +    |.+.+.|-++.+.........   .--..+-|.| ..+.+++..             
T Consensus       134 T~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~  212 (461)
T PF05694_consen  134 TVHCLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNP  212 (461)
T ss_dssp             EEEE-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---T
T ss_pred             eeeecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCCh
Confidence            344557898888762   2    568899988887776654322   2345567778 677777654             


Q ss_pred             -------CCCcEEEEEeecceeeeeecccc--ccceeEEEecC--CCE-EEEEcCCCcEEEE-EcCCCcccceeeeecCC
Q 001311          868 -------DDSSIQIYNVRVDEVKSKLKGHS--KRITGLAFSHA--LNV-LVSSGADSQLCVW-SSDGWEKQKNRFLQIPT  934 (1102)
Q Consensus       868 -------~dg~v~vwd~~~~~~~~~l~~h~--~~V~~l~~s~d--~~~-l~s~s~Dg~i~vw-d~~~~~~~~~~~~~~~~  934 (1102)
                             ...++.+||+.+.+.++++.--.  .....|.|.++  ..+ ++.+.-..+|..| .-+.++-....++.+..
T Consensus       213 ~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~  292 (461)
T PF05694_consen  213 EDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPA  292 (461)
T ss_dssp             TTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--
T ss_pred             hHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCC
Confidence                   23589999999999998885432  23556777655  333 3333344445444 32444443444444433


Q ss_pred             CCC-------------CCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCc---eEeeeeccCCC--------------
Q 001311          935 GRT-------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKL---ECVKQWVPRES--------------  982 (1102)
Q Consensus       935 ~~~-------------~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~---~~~~~~~~~~h--------------  982 (1102)
                      ...             ..+.-|+.+.+|.|.++|.++  .+|.|+.||+..-   +.+..+...+-              
T Consensus       293 ~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l  372 (461)
T PF05694_consen  293 KKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRL  372 (461)
T ss_dssp             EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS-----
T ss_pred             cccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcccccccc
Confidence            210             012457999999999999995  7999999999763   33333332221              


Q ss_pred             CCCeeEEEEcCCCcEEEEEe
Q 001311          983 SAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus       983 ~~~v~~l~~spd~~~l~s~s 1002 (1102)
                      .+...-+..|-||+.|...+
T Consensus       373 ~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  373 RGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             -S----EEE-TTSSEEEEE-
T ss_pred             CCCCCeEEEccCCeEEEEEe
Confidence            23347788999999987655

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.23  E-value=0.6  Score=55.27  Aligned_cols=234  Identities=9%  Similarity=0.074  Sum_probs=129.4

Q ss_pred             cCCCeEEEEe-C------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCC-C-----cEEEEEeecc
Q 001311          816 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-S-----SIQIYNVRVD  880 (1102)
Q Consensus       816 ~d~~~las~s-d------g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-g-----~v~vwd~~~~  880 (1102)
                      ..+..++.|+ +      ..+..+|..+.+-...  +. ....-.++++.  ++.+.++|+.| |     .+..||..++
T Consensus       283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence            3445566665 4      3588888877643222  22 22234455555  57889999998 3     6778887765


Q ss_pred             e--eeeeeccccccceeEEEecCCCEEEEEcCCCc-----EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311          881 E--VKSKLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  953 (1102)
Q Consensus       881 ~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  953 (1102)
                      +  .+..+...........  -+|...|+||.||.     |-.||..+.+-.........        .-..-...-+|+
T Consensus       360 ~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~--------r~~~gv~~~~g~  429 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR--------RSGHGVAVLGGK  429 (571)
T ss_pred             ceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcc--------eeeeEEEEECCE
Confidence            4  2233332222222222  27888999999964     77787776442111111110        112223334666


Q ss_pred             EEEEE-eC------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCceeEEEe
Q 001311          954 HFLVV-HE------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       954 ~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~~~~~~ 1021 (1102)
                      ..++| .+      ..+..||..+++....-.... ...-..++ .-++.+.+.|+.|+     +|..||..+.+-...-
T Consensus       430 iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  430 LYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA  507 (571)
T ss_pred             EEEEcCcCCCccccceEEEEcCCCCceeecCCccc-ccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence            66663 23      368899998877654433211 11112233 23778888888776     3788888877654321


Q ss_pred             CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCC-----cEEEEeccCCCcccccCCC
Q 001311         1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGVPPP 1077 (1102)
Q Consensus      1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~~~~ 1077 (1102)
                      .    +...     .....++-.  ++.+.++|+.||     +|..||..+.+  |....+
T Consensus       508 ~----m~~~-----rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~  555 (571)
T KOG4441|consen  508 P----MTSP-----RSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTE  555 (571)
T ss_pred             c----Cccc-----cccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc--eeeCCC
Confidence            1    2211     111122222  578889999887     68888887766  554433

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.19  E-value=0.7  Score=48.52  Aligned_cols=144  Identities=13%  Similarity=0.066  Sum_probs=89.0

Q ss_pred             CeeEEEEecCCCeEEEEe--CCe--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEE-eeccee
Q 001311          808 AVPCFALSKNDSYVMSAS--GGK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYN-VRVDEV  882 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s--dg~--I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd-~~~~~~  882 (1102)
                      .+.+.++++|++.+|...  ++.  ++++...  ....... ....++.-.|++ ++.+.+....+...+++. ..+++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcc
Confidence            688999999999887765  444  5555443  3333322 223688889999 677777777677777774 233322


Q ss_pred             ee-eecc--ccccceeEEEecCCCEEEEEc---CCCcEEEEEcCCCccc----ceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311          883 KS-KLKG--HSKRITGLAFSHALNVLVSSG---ADSQLCVWSSDGWEKQ----KNRFLQIPTGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       883 ~~-~l~~--h~~~V~~l~~s~d~~~l~s~s---~Dg~i~vwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~spdg  952 (1102)
                      .. .+..  -.+.|+++.+||||..+|...   .++.|.|=-+......    ..........   ....+..+.|.+++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~~  177 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDDS  177 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCCC
Confidence            21 1111  112899999999999888665   3566776655432221    1111111111   12478899999999


Q ss_pred             cEEEEE
Q 001311          953 IHFLVV  958 (1102)
Q Consensus       953 ~~l~~~  958 (1102)
                      .+++.+
T Consensus       178 ~L~V~~  183 (253)
T PF10647_consen  178 TLVVLG  183 (253)
T ss_pred             EEEEEe
Confidence            988874

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.16  E-value=0.021  Score=60.41  Aligned_cols=102  Identities=10%  Similarity=0.143  Sum_probs=82.8

Q ss_pred             hhHHhHHHHHHHHhhhcCCCcc----------HHHHHHHHhcCCHHHHHHHhccc-ccccCccccchhhHHHHHhHhHHH
Q 001311            4 SSKKLFTSKHFLLEQESGFFFN----------MKYFEDEVHNGNWDDVEKYLSGF-TKVDDNRYSMKIFFEIRKQKYLEA   72 (1102)
Q Consensus         4 ~~~~g~~~s~~~l~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~i~~q~~~El   72 (1102)
                      ++.+|....+..|-+|+|...+          +.+.-+++.+|+-+-|++.+..- ..+.+.. +. +.|.+..+.|+++
T Consensus       127 ~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~-s~-LE~~Lh~l~fl~l  204 (394)
T KOG2817|consen  127 FYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKS-SS-LEFKLHSLHFLSL  204 (394)
T ss_pred             HHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhcccc-cc-HHHHHHHHHHHHH
Confidence            5678999999999999999862          78889999999999999988763 2333322 23 7899999999999


Q ss_pred             hcCCCHH--HHHHHHHhhcccccccCHHHHHHHHHHh
Q 001311           73 LDKHDRA--KAVEILVKDLKVFSTFNEELFKEITQLL  107 (1102)
Q Consensus        73 l~~~~~~--~a~~~l~~~~~~l~~~~~~~~~~L~~ll  107 (1102)
                      +..|...  +|++..|+.++||...+...++.|-.+|
T Consensus       205 ~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl  241 (394)
T KOG2817|consen  205 IRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSL  241 (394)
T ss_pred             HhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHH
Confidence            9999988  9999999999999776655666665444

>PHA02713 hypothetical protein; Provisional

Probab=96.14  E-value=0.29  Score=58.07  Aligned_cols=188  Identities=10%  Similarity=0.062  Sum_probs=97.6

Q ss_pred             cCCCeEEEEe-C------CeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeecce
Q 001311          816 KNDSYVMSAS-G------GKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE  881 (1102)
Q Consensus       816 ~d~~~las~s-d------g~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~  881 (1102)
                      -++..++.|+ +      ..+..||..+..-.  ..+....... +++. - ++++.+.|+.++     .+..||..+.+
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            3666666665 3      24778887765321  1121111112 2222 2 678888898764     48889987643


Q ss_pred             --eeeeeccccccceeEEEecCCCEEEEEcCCC-----------------------cEEEEEcCCCcccceeeeecCCCC
Q 001311          882 --VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----------------------QLCVWSSDGWEKQKNRFLQIPTGR  936 (1102)
Q Consensus       882 --~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~i~vwd~~~~~~~~~~~~~~~~~~  936 (1102)
                        .+..+.........+  .-+|+..+.||.++                       .+..||..+.+-.   .+......
T Consensus       379 W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~---~v~~m~~~  453 (557)
T PHA02713        379 WKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE---TLPNFWTG  453 (557)
T ss_pred             EEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe---ecCCCCcc
Confidence              333332222222222  23678888887653                       3667777764422   11111110


Q ss_pred             CCCCCCCcEEEEccCCcEEEEE-eC------CeEEEEEcCC-ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC--e
Q 001311          937 TPTAQSDTRVQFHQDQIHFLVV-HE------TQLAIFETTK-LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA--T 1006 (1102)
Q Consensus       937 ~~~~~~v~~~~~spdg~~l~~~-~d------~~i~iwd~~~-~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg--~ 1006 (1102)
                           .....+..-+|+..++| .+      ..+..||..+ .+....-...........+.+  +|+..++|+.||  .
T Consensus       454 -----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~  526 (557)
T PHA02713        454 -----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYML  526 (557)
T ss_pred             -----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceee
Confidence                 11111223345555554 32      2467899987 554433222122222223333  788999999888  6


Q ss_pred             EEEEEcCCceeE
Q 001311         1007 VCVFSAANLKLR 1018 (1102)
Q Consensus      1007 I~vwd~~~~~~~ 1018 (1102)
                      +..||..+.+-.
T Consensus       527 ~e~yd~~~~~W~  538 (557)
T PHA02713        527 QDTFNVYTYEWN  538 (557)
T ss_pred             hhhcCccccccc
Confidence            777887776443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.06  E-value=0.13  Score=57.47  Aligned_cols=158  Identities=13%  Similarity=0.156  Sum_probs=89.5

Q ss_pred             CCCeeEEEEecCCCcEEEEEe--CCCcEEEEEeecceeeeeeccccccceeEEEecC----CCEEEEEcCCCcEEEEEcC
Q 001311          847 PPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      -.++..++|.. +.+.+.+.-  .+|.+++=|   .+.+.+|    ..|.+++|+|-    -..|...-.-..|.||-+.
T Consensus        19 iHPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~   90 (671)
T PF15390_consen   19 IHPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC   90 (671)
T ss_pred             hccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence            34688899984 333444332  344444322   2233443    45889999985    3344455566789999987


Q ss_pred             CCc--ccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeE-EEEEcCC--ceEeeeeccCCCCCCeeEEEEcCCC
Q 001311          921 GWE--KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQL-AIFETTK--LECVKQWVPRESSAPITHATFSCDS  995 (1102)
Q Consensus       921 ~~~--~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i-~iwd~~~--~~~~~~~~~~~h~~~v~~l~~spd~  995 (1102)
                      ...  ..+...-+..+-..+.+--...+.|+|....|++-....+ .++++..  .+....+.   ..+.|.|.||.+||
T Consensus        91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~---~~G~IhCACWT~DG  167 (671)
T PF15390_consen   91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIK---TSGLIHCACWTKDG  167 (671)
T ss_pred             cCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEecc---CCceEEEEEecCcC
Confidence            322  2222222222111111122367899999999988433323 3444433  33333332   26789999999999


Q ss_pred             cEEEEEeCC-CeEEEEEcCCc
Q 001311          996 QLVYACFLD-ATVCVFSAANL 1015 (1102)
Q Consensus       996 ~~l~s~s~D-g~I~vwd~~~~ 1015 (1102)
                      ..|+.+-.. =.-+|||-...
T Consensus       168 ~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  168 QRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             CEEEEEeCCeEEEEEecCchh
Confidence            988766433 34789986544

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.95  E-value=0.44  Score=50.05  Aligned_cols=149  Identities=15%  Similarity=0.025  Sum_probs=89.0

Q ss_pred             CeeEEEEecCCCcEEEEEe---CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE-cCCCcc
Q 001311          849 AATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS-SDGWEK  924 (1102)
Q Consensus       849 ~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd-~~~~~~  924 (1102)
                      .+...++++ +++.+|...   ....++++.  .+.....+. -...++.-.|++++...+....+...+++. ...++.
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGP--AGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEc--CCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence            688999999 677665544   333555554  333333321 223688889999987777777677677774 233222


Q ss_pred             cceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEcC---Cc--eEe-eeecc-CCCCCCeeEEEEcC
Q 001311          925 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFETT---KL--ECV-KQWVP-RESSAPITHATFSC  993 (1102)
Q Consensus       925 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----d~~i~iwd~~---~~--~~~-~~~~~-~~h~~~v~~l~~sp  993 (1102)
                      . ...+......    ..|..+.+||||..++...    ++.|.+--+.   .+  ..+ ..... ......+.++.|.+
T Consensus       101 ~-~~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~  175 (253)
T PF10647_consen  101 E-PVEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD  175 (253)
T ss_pred             e-eEEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence            1 1112221110    1689999999999999843    5677766543   22  111 00111 12256899999999


Q ss_pred             CCcEEEEEeCCCe
Q 001311          994 DSQLVYACFLDAT 1006 (1102)
Q Consensus       994 d~~~l~s~s~Dg~ 1006 (1102)
                      ++.+++.+...+.
T Consensus       176 ~~~L~V~~~~~~~  188 (253)
T PF10647_consen  176 DSTLVVLGRSAGG  188 (253)
T ss_pred             CCEEEEEeCCCCC
Confidence            9998876665443

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=95.91  E-value=2.5  Score=47.37  Aligned_cols=198  Identities=11%  Similarity=0.087  Sum_probs=105.5

Q ss_pred             CCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccc-
Q 001311          702 VKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKAT-  780 (1102)
Q Consensus       702 ~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-  780 (1102)
                      ...+.+-+.||.+.+++-+.......+..+.+|+        .++|.+....+++++.+..+.-|....-....+.... 
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPg--------Pl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~  216 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPG--------PLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQ  216 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCc--------CeEEeecCCEEEEecCceeEEEecHHHhhhcccccccc
Confidence            5678888999999999877644322222222222        4678888888999999988988876432111111000 


Q ss_pred             ---------ccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCee
Q 001311          781 ---------ASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAAT  851 (1102)
Q Consensus       781 ---------~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~  851 (1102)
                               ...-..-|...-|+..          -.|..+.++.....+++-+..++.+.+.. |......+-.-.+..
T Consensus       217 ~~~~~~~~~~k~l~~dWs~nlGE~~----------l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~krLd~~p~~  285 (418)
T PF14727_consen  217 SGTEQDISSGKKLNPDWSFNLGEQA----------LDIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKRLDYNPSC  285 (418)
T ss_pred             ccccccccccccccceeEEECCcee----------EEEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEecCCceee
Confidence                     0000112333222211          11222333334445566666777777753 444333332112222


Q ss_pred             EEEEe------cCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEe---cCCCEEEEEcCCCcEEEEEcCC
Q 001311          852 FLAFH------PQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS---HALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       852 ~l~~s------p~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s---~d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                      ...|.      +..+..+++++.++++.||.=.  +++...+....+| +|...   .-...|++-+.+|.+.+-=+.+
T Consensus       286 ~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~--~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  286 FCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDT--TLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             EEEEEeecccCCCCceEEEEEecCCeEEEEeCC--eEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            22221      2112358889999999999733  3333333222332 33322   2345888899999998876655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.88  E-value=1.4  Score=45.46  Aligned_cols=170  Identities=7%  Similarity=0.051  Sum_probs=113.0

Q ss_pred             eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001311          886 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  964 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~  964 (1102)
                      +.+-...|.++.|+|+.+.|++......-.||=-..|+..+..++....       ....+.+..+|++.++- .++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~-------DpE~Ieyig~n~fvi~dER~~~l~  153 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS-------DPETIEYIGGNQFVIVDERDRALY  153 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccC-------ChhHeEEecCCEEEEEehhcceEE
Confidence            3444455999999999999999888887777766666665554444332       34678888999998885 788888


Q ss_pred             EEEcCCceEeee-----ecc--CCC-CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCC---
Q 001311          965 IFETTKLECVKQ-----WVP--RES-SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS--- 1033 (1102)
Q Consensus       965 iwd~~~~~~~~~-----~~~--~~h-~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~--- 1033 (1102)
                      ++.++.+..+..     +..  ..+ ....-.++|+|.+..|..+-+-.-+.||.+..+..-....    ....+..   
T Consensus       154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~----~~~~~~~~~~  229 (316)
T COG3204         154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVH----ASLDPTADRD  229 (316)
T ss_pred             EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccc----cccCcccccc
Confidence            888766532221     111  122 5567789999999999999888878887765332111111    0111111   


Q ss_pred             ---CcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311         1034 ---SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1034 ---~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                         ..+.  ++.|.+..+.+||-+..++.|...|....
T Consensus       230 ~f~~DvS--gl~~~~~~~~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         230 LFVLDVS--GLEFNAITNSLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             eEeeccc--cceecCCCCcEEEEecCCceEEEEecCCC
Confidence               1133  78888877888888888888877777544

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.88  E-value=6.6  Score=48.11  Aligned_cols=125  Identities=16%  Similarity=0.166  Sum_probs=70.1

Q ss_pred             EEEEecCCCcEEEEeCCCCeeeEEeecCCCC--------eEEEeeeec--------------CCccEEEEEeCCCeEEEE
Q 001311          469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAP--------VYSVCPHHK--------------ENIQFIFSTALDGKIKAW  526 (1102)
Q Consensus       469 ~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~--------v~~v~~~~~--------------~~~~~l~s~s~dg~i~~w  526 (1102)
                      .++.++.++.|.-.|..+|+.+.++......        ...+.+...              ..+..++.++.|+.|.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            3666666778888888888888776532211        112222211              123478889999999999


Q ss_pred             EcCCCCCeeeecCCCCeee--EEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCc
Q 001311          527 LYDNLGSRVDYEAPGRWCT--TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSV  594 (1102)
Q Consensus       527 d~~~~~~~~~~~~~~~~v~--~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~  594 (1102)
                      |.++++.+..+......-.  .+.-.+.+..   ..+..++    +  .++.++.++.          +|.|+-+|.++|
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~---~~ts~P~----V--~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TG  346 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYY---YPTSPPL----V--AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTG  346 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCccc---ccccCCE----E--ECCEEEEEecccccccccCCCcEEEEEECCCC
Confidence            9999888776543221100  0000011100   0000000    0  0234555532          689999999999


Q ss_pred             ceEEEEcC
Q 001311          595 QLLTSIDA  602 (1102)
Q Consensus       595 ~~~~~~~~  602 (1102)
                      +.+..+..
T Consensus       347 kl~W~~~~  354 (764)
T TIGR03074       347 ALVWAWDP  354 (764)
T ss_pred             cEeeEEec
Confidence            99988763

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.79  E-value=0.031  Score=40.33  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=29.5

Q ss_pred             CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc
Q 001311          408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD  441 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~  441 (1102)
                      ...|.+++|||...+||.|+.||.|.|+.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            457999999999999999999999999998 443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.75  E-value=0.031  Score=54.69  Aligned_cols=104  Identities=15%  Similarity=0.203  Sum_probs=71.8

Q ss_pred             CCeEEEEe-CCeEEEEEcCCC-ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-ccce
Q 001311          818 DSYVMSAS-GGKISLFNMMTF-KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRIT  894 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~-~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~  894 (1102)
                      +..+++|. +|.|++|+..-. .....+..-...|.++.-.-+++.+..++..||.||.|++.-++.+.....|. ..+.
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e  149 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGE  149 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcc
Confidence            34566666 999999987622 11111222223344443333366799999999999999999888888877787 6666


Q ss_pred             eEEEecCCCEEEEE--cCCCcEEEEEcCC
Q 001311          895 GLAFSHALNVLVSS--GADSQLCVWSSDG  921 (1102)
Q Consensus       895 ~l~~s~d~~~l~s~--s~Dg~i~vwd~~~  921 (1102)
                      .+..+..++.++++  |.|..++.|+++.
T Consensus       150 ~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  150 ELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eeEEecCCceEEeeccccchhhhhcchhh
Confidence            67777777777777  7788888888765

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=0.036  Score=65.80  Aligned_cols=102  Identities=21%  Similarity=0.268  Sum_probs=70.9

Q ss_pred             EEEEEecCCeEEEEeCCCCee-EEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccC
Q 001311          361 LLLVGTNVGDIGLWEVGSRER-LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  439 (1102)
Q Consensus       361 llasg~~d~~i~iWd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~  439 (1102)
                      .++.|+..|.|...|+...-. .+                   --..-.++|++++|+.||++++.|-.+|.|.+||+..
T Consensus       101 ~ivi~Ts~ghvl~~d~~~nL~~~~-------------------~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~  161 (1206)
T KOG2079|consen  101 PIVIGTSHGHVLLSDMTGNLGPLH-------------------QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR  161 (1206)
T ss_pred             eEEEEcCchhhhhhhhhcccchhh-------------------cCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence            488888888998888765311 11                   0122357999999999999999999999999999999


Q ss_pred             CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311          440 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  485 (1102)
Q Consensus       440 ~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~  485 (1102)
                      ++.++.+.........|..+.+..++.  .++++...|.  +|.+.
T Consensus       162 ~k~l~~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  162 AKILKVITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             CcceeeeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEEEE
Confidence            887764322222222344455555666  6888877776  66543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.62  E-value=0.034  Score=54.40  Aligned_cols=108  Identities=12%  Similarity=0.012  Sum_probs=58.6

Q ss_pred             EEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCC
Q 001311          905 LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESS  983 (1102)
Q Consensus       905 l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~  983 (1102)
                      |..-+.|+.|+-+++...+...........+          ...-.-+..+++ +.+|.|++|............+.+-.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~----------~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e  102 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG----------QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE  102 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc----------eeecccCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence            3445668888888776533211110000000          111122344555 58999999988732221111111111


Q ss_pred             CCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          984 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       984 ~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .-...+.-..++.+..+++.||.||.|++.-++.+....
T Consensus       103 ~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g  141 (238)
T KOG2444|consen  103 SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVG  141 (238)
T ss_pred             cceeccccccccceeEEeccCCceeeeccccCceeeeec
Confidence            122223334456688899999999999999988887655

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.43  E-value=4.7  Score=44.49  Aligned_cols=157  Identities=15%  Similarity=0.107  Sum_probs=67.5

Q ss_pred             CCCeEEEEEecCCeEEEEeCCCCe-eEEeeeeeeeccCCCCccccc--cccCCCCCCeEEEEEccCCCeEEEE--ECC--
Q 001311          357 VQQTLLLVGTNVGDIGLWEVGSRE-RLVLRNFKVWDLGACSMPLQA--ALVKDPGVSVNRVIWSPDGSLFGVA--YSR--  429 (1102)
Q Consensus       357 dg~~llasg~~d~~i~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~V~~l~~spdg~~las~--~~d--  429 (1102)
                      +.++|++-|=.++.|.|.|+.+.- ....  .++.+-    .....  ..-..|  .+.|   -|+|++++++  ..+  
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l--~KvIe~----~ev~~k~g~s~PH--T~Hc---lp~G~imIS~lGd~~G~  154 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRL--HKVIEP----EEVFEKTGLSRPH--TVHC---LPDGRIMISALGDADGN  154 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EE--EEEE-H----HHHHHHH-EEEEE--EEEE----SS--EEEEEEEETTS-
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCce--EeeeCH----HHHHhhcCCCCCc--eeee---cCCccEEEEeccCCCCC
Confidence            567766666678999999998421 1110  011110    00000  001112  2333   3689899885  333  


Q ss_pred             --CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEec--------------------CCCcEEEEeCCCC
Q 001311          430 --HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG--------------------DDKTIKVWDATNG  487 (1102)
Q Consensus       430 --~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~--------------------~d~~i~vWd~~~~  487 (1102)
                        |-+.+.|-++.+....-..-.+...--..+-|.|..+  +++|..                    ...++.+||+.+.
T Consensus       155 g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r  232 (461)
T PF05694_consen  155 GPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTR  232 (461)
T ss_dssp             S--EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTT
T ss_pred             CCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCC
Confidence              4578888777554432111111122345566677665  566653                    2468999999999


Q ss_pred             eeeEEeecCC--CCeEEEeeeecCCccEEEEEeC-CCeEEEE
Q 001311          488 AKQYIFEGHE--APVYSVCPHHKENIQFIFSTAL-DGKIKAW  526 (1102)
Q Consensus       488 ~~~~~~~~h~--~~v~~v~~~~~~~~~~l~s~s~-dg~i~~w  526 (1102)
                      +.++++.--.  .....+.|..+++..+-++++. ..+|..|
T Consensus       233 ~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~  274 (461)
T PF05694_consen  233 KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF  274 (461)
T ss_dssp             EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred             cEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence            9999986432  2244566666666555444443 3444333

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK10115 protease 2; Provisional

Probab=95.33  E-value=10  Score=46.48  Aligned_cols=245  Identities=9%  Similarity=0.022  Sum_probs=115.6

Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      -.+..+.++|||++|+.+.+.+--.-++                 +.+.++.+|..+...+..     .-..++|++|++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~-----------------l~v~d~~tg~~l~~~i~~-----~~~~~~w~~D~~  184 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYG-----------------IRFRNLETGNWYPELLDN-----VEPSFVWANDSW  184 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEE-----------------EEEEECCCCCCCCccccC-----cceEEEEeeCCC
Confidence            3566788999999877665432222222                 133444555433222211     114589999998


Q ss_pred             eEEEEe-C------CeEEEEEcCCC--ceeeeecCCCCCeeEEEEecCCCcEEEEEeC---CCcEEEEEee--cceeeee
Q 001311          820 YVMSAS-G------GKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMD---DSSIQIYNVR--VDEVKSK  885 (1102)
Q Consensus       820 ~las~s-d------g~I~iwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~---dg~v~vwd~~--~~~~~~~  885 (1102)
                      .|+... +      ..|+.+++.++  +....+...........+.+.++++++..+.   ++.+.+|+..  +++....
T Consensus       185 ~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~  264 (686)
T PRK10115        185 TFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVF  264 (686)
T ss_pred             EEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEE
Confidence            777664 2      25888888887  3333444333333322333336666655543   3478888843  3332222


Q ss_pred             eccccccceeEEEecCCCEEEEEcCC-C--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E-eC
Q 001311          886 LKGHSKRITGLAFSHALNVLVSSGAD-S--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HE  960 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~~~l~s~s~D-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~-~d  960 (1102)
                      +..-.+....+. +..+.+++....+ .  .|...++..  ......+.....    ...+..+.++  +.+|+. . .+
T Consensus       265 ~~~~~~~~~~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~--~~~~~~l~~~~~----~~~i~~~~~~--~~~l~~~~~~~  335 (686)
T PRK10115        265 LPRRKDHEYSLD-HYQHRFYLRSNRHGKNFGLYRTRVRD--EQQWEELIPPRE----NIMLEGFTLF--TDWLVVEERQR  335 (686)
T ss_pred             EECCCCCEEEEE-eCCCEEEEEEcCCCCCceEEEecCCC--cccCeEEECCCC----CCEEEEEEEE--CCEEEEEEEeC
Confidence            221112222222 2233333333222 2  333334432  111122221111    1246667776  334444 3 55


Q ss_pred             Ce--EEEEEcCCceEeeeeccCCCCCCeeEEEEc--CCCc-EEEEEeC---CCeEEEEEcCCcee
Q 001311          961 TQ--LAIFETTKLECVKQWVPRESSAPITHATFS--CDSQ-LVYACFL---DATVCVFSAANLKL 1017 (1102)
Q Consensus       961 ~~--i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s--pd~~-~l~s~s~---Dg~I~vwd~~~~~~ 1017 (1102)
                      +.  +.+++..++.. ..+.... ...+..+.++  +++. ++++.+.   -+.++.+|..+++.
T Consensus       336 g~~~l~~~~~~~~~~-~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~  398 (686)
T PRK10115        336 GLTSLRQINRKTREV-IGIAFDD-PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGER  398 (686)
T ss_pred             CEEEEEEEcCCCCce-EEecCCC-CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcE
Confidence            54  45555543333 3322111 1223333444  4443 4444443   36799999988753

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.30  E-value=0.75  Score=45.27  Aligned_cols=90  Identities=9%  Similarity=0.110  Sum_probs=65.3

Q ss_pred             eEEEEecCCCeEEEEe--CCeEEEEE--cCCCce-----eeeecC----CCCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311          810 PCFALSKNDSYVMSAS--GGKISLFN--MMTFKT-----MATFMP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYN  876 (1102)
Q Consensus       810 ~~l~~s~d~~~las~s--dg~I~iwd--~~~~~~-----~~~~~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  876 (1102)
                      ..++|+.|.+.+....  +-+|.-||  ..+|..     +..++.    .....-.+++.. +|++.++.-..|+|...|
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d  239 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD  239 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence            4578888888776665  56777787  445443     222222    112234456666 788888888999999999


Q ss_pred             eecceeeeeeccccccceeEEEec
Q 001311          877 VRVDEVKSKLKGHSKRITGLAFSH  900 (1102)
Q Consensus       877 ~~~~~~~~~l~~h~~~V~~l~~s~  900 (1102)
                      ..+|+.+.+++-....|+++||--
T Consensus       240 p~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  240 PTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CCCCcEEEEEEcCCCceEEEEecC
Confidence            999999999988899999999963

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.13  E-value=3.2  Score=41.09  Aligned_cols=48  Identities=19%  Similarity=0.212  Sum_probs=39.7

Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC
Q 001311          568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  617 (1102)
Q Consensus       568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  617 (1102)
                      ++++.+|+..++.-..++|...|..+|+.+..+...  +..++|++|-..
T Consensus       217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP--t~qitsccFgGk  264 (310)
T KOG4499|consen  217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP--TPQITSCCFGGK  264 (310)
T ss_pred             ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC--CCceEEEEecCC
Confidence            345667788888889999999999999999998876  457999999653

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.11  E-value=1.1  Score=53.05  Aligned_cols=193  Identities=9%  Similarity=0.065  Sum_probs=104.2

Q ss_pred             eEEEEecCCCeEEEEe-C-C-----eEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEE
Q 001311          810 PCFALSKNDSYVMSAS-G-G-----KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIY  875 (1102)
Q Consensus       810 ~~l~~s~d~~~las~s-d-g-----~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vw  875 (1102)
                      .++++. ++...++|+ | |     ++..||..+.+-..  .+...........+   +|.+.|+|+.||     +|..|
T Consensus       326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~svE~Y  401 (571)
T KOG4441|consen  326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNSVECY  401 (571)
T ss_pred             ccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE---CCEEEEEeccccccccccEEEe
Confidence            344443 446666666 6 2     47888887655222  12211221222222   789999999997     57778


Q ss_pred             Eeecce--eeeeeccccccceeEEEecCCCEEEEEcCCC------cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311          876 NVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  947 (1102)
Q Consensus       876 d~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  947 (1102)
                      |..+.+  .+..+.........+.  -+|+..+.||.|+      ++..||..+..-.....+......       ..++
T Consensus       402 Dp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-------~g~a  472 (571)
T KOG4441|consen  402 DPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-------FGVA  472 (571)
T ss_pred             cCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccccccc-------ceEE
Confidence            876643  3332322222222222  3788888888664      467888877654333333222221       2233


Q ss_pred             EccCCcEEEE-EeCC-----eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCce
Q 001311          948 FHQDQIHFLV-VHET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLK 1016 (1102)
Q Consensus       948 ~spdg~~l~~-~~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~ 1016 (1102)
                       .-++...++ |.|+     .|..||..+.+....-........+..+.+  +++..++|+.||     +|..||..+.+
T Consensus       473 -~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  473 -VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             -EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCc
Confidence             334555555 4444     488899988776554322222222222333  677888888876     47777766654


Q ss_pred             eE
Q 001311         1017 LR 1018 (1102)
Q Consensus      1017 ~~ 1018 (1102)
                      -.
T Consensus       550 W~  551 (571)
T KOG4441|consen  550 WT  551 (571)
T ss_pred             ee
Confidence            43

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.10  E-value=0.081  Score=38.20  Aligned_cols=34  Identities=15%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee
Q 001311          983 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1017 (1102)
Q Consensus       983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~ 1017 (1102)
                      ...|..++|+|...+||.++.||.|.||++ +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            567999999999999999999999999998 5443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.85  E-value=6.7  Score=41.97  Aligned_cols=231  Identities=12%  Similarity=0.040  Sum_probs=110.7

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeec---CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-cee-
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV-  882 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~-  882 (1102)
                      ...++.|.. ...+++|..+. .+.....++.-..+.   .-.+....+.... ++..++ ++..|.|+.  ... |+. 
T Consensus        63 ~l~~I~f~~-~~g~ivG~~g~-ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~~~~l-~~~~G~iy~--T~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDG-NEGWIVGEPGL-LLHTTDGGKTWERVPLSSKLPGSPFGITALG-DGSAEL-AGDRGAIYR--TTDGGKTW  136 (302)
T ss_dssp             EEEEEEEET-TEEEEEEETTE-EEEESSTTSS-EE----TT-SS-EEEEEEEE-TTEEEE-EETT--EEE--ESSTTSSE
T ss_pred             eEEEEEecC-CceEEEcCCce-EEEecCCCCCcEEeecCCCCCCCeeEEEEcC-CCcEEE-EcCCCcEEE--eCCCCCCe
Confidence            356677754 34555555553 333333344333221   1123333444433 343333 344555443  322 221 


Q ss_pred             eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCe
Q 001311          883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ  962 (1102)
Q Consensus       883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~  962 (1102)
                      ......-.+.+..+..++||++++++..-....-||-...   ...+.....     ...|..+.|+|++...+++..+.
T Consensus       137 ~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---~w~~~~r~~-----~~riq~~gf~~~~~lw~~~~Gg~  208 (302)
T PF14870_consen  137 QAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---TWQPHNRNS-----SRRIQSMGFSPDGNLWMLARGGQ  208 (302)
T ss_dssp             EEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---S-EEEE--S-----SS-EEEEEE-TTS-EEEEETTTE
T ss_pred             eEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---cceEEccCc-----cceehhceecCCCCEEEEeCCcE
Confidence            1223344577888999999999998877666677875431   122222221     24789999999999888888888


Q ss_pred             EEEEE-cCCceEeee--eccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccce
Q 001311          963 LAIFE-TTKLECVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1039 (1102)
Q Consensus       963 i~iwd-~~~~~~~~~--~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 1039 (1102)
                      |+.=+ ....+....  .....-.-.+..++|.+++...|+|+ .|.+. ...+.|+-=.+.+.....+     .+.+  
T Consensus       209 ~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGktW~~~~~~~~~~-----~n~~--  279 (302)
T PF14870_consen  209 IQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKTWQKDRVGENVP-----SNLY--  279 (302)
T ss_dssp             EEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-EE-GGGTTSS-----S-----
T ss_pred             EEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCccceECccccCCC-----CceE--
Confidence            88776 222222111  11111234589999999988888665 55443 4566666554444222222     2245  


Q ss_pred             EEEecCCCCCEEEEEecCCcEEEE
Q 001311         1040 VIAAHPQEPNEFALGLSDGGVHVF 1063 (1102)
Q Consensus      1040 ~v~f~p~d~~~l~s~~~Dg~v~vW 1063 (1102)
                      .|.|.+  ++.-.+.+.||.|.-|
T Consensus       280 ~i~f~~--~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  280 RIVFVN--PDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             EEEEEE--TTEEEEE-STTEEEEE
T ss_pred             EEEEcC--CCceEEECCCcEEEEe
Confidence            788876  3455555778887655

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.83  E-value=4.7  Score=48.88  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=57.9

Q ss_pred             CCCCeeEEEEecCCCeEEEEeCCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          805 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      ....|..+.++++|+++|..+...|.|..+.. +.....+.+-...|.|=.+.- +..++.                   
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~~-------------------  142 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFFT-------------------  142 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhcc-------------------
Confidence            34578999999999999998876677766632 111122332223333333222 221111                   


Q ss_pred             eeeccccccceeEEEecC---CCEEEEEcCCCcEEEEEcCC
Q 001311          884 SKLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                         ..+...|..+.|+|.   +..|+.-..|+++|+||+..
T Consensus       143 ---~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  143 ---SNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             ---CCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence               123456777888876   47888888899999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA03098 kelch-like protein; Provisional

Probab=94.72  E-value=1.5  Score=52.42  Aligned_cols=187  Identities=7%  Similarity=-0.016  Sum_probs=92.6

Q ss_pred             cCCCeEEEEe-C------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeecce
Q 001311          816 KNDSYVMSAS-G------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDE  881 (1102)
Q Consensus       816 ~d~~~las~s-d------g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~  881 (1102)
                      .++..++.|+ +      ..+..||..+.+-...  +.........++  - ++++++.|+.++     .+..||..+++
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            4555556554 3      2477888776543221  111111222222  2 677888888663     57778877643


Q ss_pred             e--eeeeccccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311          882 V--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  953 (1102)
Q Consensus       882 ~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  953 (1102)
                      -  ...+....... ++ ..-+++..+.||.+      ..+..||..+.+-..   .......    .. ...+...+++
T Consensus       370 W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~---~~~~p~~----r~-~~~~~~~~~~  439 (534)
T PHA03098        370 WREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK---GSPLPIS----HY-GGCAIYHDGK  439 (534)
T ss_pred             eeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeee---cCCCCcc----cc-CceEEEECCE
Confidence            2  22222111111 12 22367777777732      357888887654321   1111100    01 1122334556


Q ss_pred             EEEEE-eC--------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCcee
Q 001311          954 HFLVV-HE--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKL 1017 (1102)
Q Consensus       954 ~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~ 1017 (1102)
                      ..+.| .+        ..+.+||..+++....-...........+.  -++++++.|+.+     ..|.+||..+.+-
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W  515 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW  515 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence            55554 21        238899998876544321111111111222  277777777754     4688888777654

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=94.54  E-value=0.034  Score=52.11  Aligned_cols=64  Identities=19%  Similarity=0.300  Sum_probs=50.2

Q ss_pred             hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC
Q 001311           60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD  123 (1102)
Q Consensus        60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~  123 (1102)
                      ++|+|+.|.||+|+..|..++|..+|.+.-..+...+.+++++|..+....++.+++....++.
T Consensus        40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~  103 (142)
T PF04494_consen   40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRS  103 (142)
T ss_dssp             GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHh
Confidence            8999999999999999999999999998777766667888999988777776665555554544

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>PHA02790 Kelch-like protein; Provisional

Probab=94.50  E-value=2.1  Score=49.99  Aligned_cols=184  Identities=10%  Similarity=-0.028  Sum_probs=91.9

Q ss_pred             cCCCeEEEEe-C-----CeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEEeecce--ee
Q 001311          816 KNDSYVMSAS-G-----GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDE--VK  883 (1102)
Q Consensus       816 ~d~~~las~s-d-----g~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~--~~  883 (1102)
                      .++..+++|+ +     .++..||..+.+-..  .+....... +++ .- ++++.++|+.++  .+..||..+++  .+
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EE-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            3455556665 3     247778877644322  222111112 222 23 678888888643  57888876543  22


Q ss_pred             eeeccccccceeEEEecCCCEEEEEcCCC---cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeC
Q 001311          884 SKLKGHSKRITGLAFSHALNVLVSSGADS---QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHE  960 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d  960 (1102)
                      ..+.......  .+..-+|+..+.||.++   .+..||..+.+-   .........     .-...+..-+|+..+.|  
T Consensus       347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W---~~~~~m~~~-----r~~~~~~~~~~~IYv~G--  414 (480)
T PHA02790        347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQW---QFGPSTYYP-----HYKSCALVFGRRLFLVG--  414 (480)
T ss_pred             CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEE---EeCCCCCCc-----cccceEEEECCEEEEEC--
Confidence            3332111111  22234778888888654   467888776432   211111110     01112223456655555  


Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCce
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLK 1016 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~ 1016 (1102)
                      |.+.+||..+++....-......... +++ .-+|+..+.|+.+     .+|.+||..+++
T Consensus       415 G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        415 RNAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             CceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCCe
Confidence            45778998877665432221111122 222 2377888888754     346666666553

>PRK13684 Ycf48-like protein; Provisional

Probab=94.40  E-value=9.8  Score=41.92  Aligned_cols=156  Identities=12%  Similarity=0.061  Sum_probs=87.1

Q ss_pred             cccceeEEEecCCCEEEEEcCCCcEEE-EEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEc
Q 001311          890 SKRITGLAFSHALNVLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET  968 (1102)
Q Consensus       890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~  968 (1102)
                      ...+.++.+.+++.+++++. .|.+.. ++- .++  ........     ....+..+.+.++++.++++..|.+.+=..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~--tW~~~~~~-----~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~  242 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQT--AWTPHQRN-----SSRRLQSMGFQPDGNLWMLARGGQIRFNDP  242 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCC-CCC--eEEEeeCC-----CcccceeeeEcCCCCEEEEecCCEEEEccC
Confidence            45688899999987766554 454432 221 111  11122111     124778999999999888887776653234


Q ss_pred             CCceEeeeeccC--CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCC
Q 001311          969 TKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus       969 ~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
                      +.|..-......  .-...+.++.+.+++..++++ .+|.|. ...+.|+.-.........+.     ..+  .+.|.. 
T Consensus       243 d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~-----~~~--~~~~~~-  312 (334)
T PRK13684        243 DDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPS-----NFY--KIVFLD-  312 (334)
T ss_pred             CCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCc-----ceE--EEEEeC-
Confidence            444432221111  113457889999988765544 677665 34555554333321111111     133  566664 


Q ss_pred             CCCEEEEEecCCcEEEEec
Q 001311         1047 EPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1047 d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                       ++.....+..|.|..|+-
T Consensus       313 -~~~~~~~G~~G~il~~~~  330 (334)
T PRK13684        313 -PEKGFVLGQRGVLLRYVG  330 (334)
T ss_pred             -CCceEEECCCceEEEecC
Confidence             345555677899888764

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.37  E-value=2.1  Score=41.56  Aligned_cols=173  Identities=11%  Similarity=0.061  Sum_probs=98.0

Q ss_pred             CCCeEEEEe---CCeEEEEEcCCCceeeeecCCCC-----CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc
Q 001311          817 NDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-----AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  888 (1102)
Q Consensus       817 d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~-----~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~  888 (1102)
                      +|.++.+.+   ...|++||+.+++.+..-.-...     .|+.+     +..+.+..-.+|.-.+||..+.+++..+. 
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~~-  128 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRFS-  128 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhcccc-
Confidence            455666554   35699999999888765432211     22222     33444455678999999999888877765 


Q ss_pred             ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEE
Q 001311          889 HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFE  967 (1102)
Q Consensus       889 h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd  967 (1102)
                      ..+.=+.++-  |++.|+.++...+++.-|.++-...... ....+|..-  ..+..+-| -||...|- -....|...+
T Consensus       129 y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v-~VT~~g~pv--~~LNELE~-VdG~lyANVw~t~~I~rI~  202 (262)
T COG3823         129 YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTV-QVTDDGVPV--SKLNELEW-VDGELYANVWQTTRIARID  202 (262)
T ss_pred             cCCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceE-EEEECCeec--ccccceee-eccEEEEeeeeecceEEEc
Confidence            2344455544  6666777766667777776654332221 111222100  01111222 14444444 2555666667


Q ss_pred             cCCceEeeeeccC----------CCCCCeeEEEEcCCC-cEEEEE
Q 001311          968 TTKLECVKQWVPR----------ESSAPITHATFSCDS-QLVYAC 1001 (1102)
Q Consensus       968 ~~~~~~~~~~~~~----------~h~~~v~~l~~spd~-~~l~s~ 1001 (1102)
                      .++|+.+.-+...          .|..-.+.+++.|++ +++++|
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            7777776554321          245567888999887 555555

>PRK13684 Ycf48-like protein; Provisional

Probab=94.14  E-value=11  Score=41.51  Aligned_cols=156  Identities=10%  Similarity=0.039  Sum_probs=88.8

Q ss_pred             CCCeeEEEEecCCCcEEEEEeCCCcEEE-EEeecceeee-eeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcc
Q 001311          847 PPAATFLAFHPQDNNIIAIGMDDSSIQI-YNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK  924 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~~dg~v~v-wd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~  924 (1102)
                      ...+..+.+.+ ++.+++++. .|.++. +|- .++.-. .-..-...++++.+.++++.++.+ ..|.+++=+.+.++.
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45688999999 777776554 565543 221 122111 122334678899999998877654 467654323333321


Q ss_pred             cceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeecc-CCCCCCeeEEEEcCCCcEEEEEeC
Q 001311          925 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFL 1003 (1102)
Q Consensus       925 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~ 1003 (1102)
                        ..........  ....+..+.+.+++..++++.+|.+. ...+.++.-..... ..-....+.+.|..+++.+++ +.
T Consensus       248 --W~~~~~~~~~--~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~  321 (334)
T PRK13684        248 --WSKPIIPEIT--NGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ  321 (334)
T ss_pred             --cccccCCccc--cccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC
Confidence              1111111000  11246788999999988888887665 34444443333221 111345778888877776664 46


Q ss_pred             CCeEEEEEc
Q 001311         1004 DATVCVFSA 1012 (1102)
Q Consensus      1004 Dg~I~vwd~ 1012 (1102)
                      .|.|-.|+-
T Consensus       322 ~G~il~~~~  330 (334)
T PRK13684        322 RGVLLRYVG  330 (334)
T ss_pred             CceEEEecC
Confidence            888887763

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=94.08  E-value=8.8  Score=40.11  Aligned_cols=229  Identities=15%  Similarity=0.232  Sum_probs=128.2

Q ss_pred             CeEEEEEccCCCeEEEEECCCeEEEEEcc------CCceeeeEEEeec-----cccCEEEEEEcCCCCe----------e
Q 001311          410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYH------GGDEVRQHLEIDA-----HVGGVNDIAFSHPNKQ----------L  468 (1102)
Q Consensus       410 ~V~~l~~spdg~~las~~~d~~v~vwd~~------~~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~----------~  468 (1102)
                      .-+.|+|+|.+.+-++....+...+||..      ..+.+  ..++..     -....+.+.|+.....          .
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L--~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPL--VVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccce--EEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            45789999999888888888999999987      12111  112221     1245777888754331          1


Q ss_pred             EEEEecCCCcEEEEeCCCCee-----eEEee-cCCCCe-EEEeeeecCCccEEEEEe-CCCeEEEEEcCCCCCee--eec
Q 001311          469 CVITCGDDKTIKVWDATNGAK-----QYIFE-GHEAPV-YSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRV--DYE  538 (1102)
Q Consensus       469 ~l~s~~~d~~i~vWd~~~~~~-----~~~~~-~h~~~v-~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~--~~~  538 (1102)
                      .++.+++||+|.=|...-+..     ...+. +..+.| ..+++.....+.+|+.+. ..++|.++|-.-.....  .+.
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~  181 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFI  181 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCcc
Confidence            367788999999998543222     12222 122333 344554344445665554 46888888754322110  010


Q ss_pred             CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC--
Q 001311          539 APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--  616 (1102)
Q Consensus       539 ~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--  616 (1102)
                      .+.  + -.-|.|-+-+.+.+  .-.++...-+++++.=+.+-.-|.|-+||+ .|..++++...+....-..|+..|  
T Consensus       182 DP~--i-PagyAPFnIqnig~--~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~  255 (336)
T TIGR03118       182 DPA--L-PAGYAPFNVQNLGG--TLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPES  255 (336)
T ss_pred             CCC--C-CCCCCCcceEEECC--eEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhh
Confidence            000  0 00011110000000  000111112333333344556689999997 688888887666555667788766  


Q ss_pred             ----CCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311          617 ----DGCLLAVSTNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       617 ----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                          .+.+|+---.||+|..+|..++ +.+-.+..
T Consensus       256 FG~~sg~lLVGNFGDG~InaFD~~sG-~~~g~L~~  289 (336)
T TIGR03118       256 FGSLSGALLVGNFGDGTINAYDPQSG-AQLGQLLD  289 (336)
T ss_pred             hCCCCCCeEEeecCCceeEEecCCCC-ceeeeecC
Confidence                4677887778999999999888 44444443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PHA03098 kelch-like protein; Provisional

Probab=94.00  E-value=3  Score=49.76  Aligned_cols=192  Identities=13%  Similarity=0.112  Sum_probs=94.5

Q ss_pred             CCcEEEEEeCCC------cEEEEEeecceeee--eeccccccceeEEEecCCCEEEEEcCC-----CcEEEEEcCCCccc
Q 001311          859 DNNIIAIGMDDS------SIQIYNVRVDEVKS--KLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQ  925 (1102)
Q Consensus       859 d~~~lasg~~dg------~v~vwd~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~  925 (1102)
                      ++.+++.|+.++      .+..||..+.+-..  .+.........+  .-+++..+.||.+     ..+..||..+.+-.
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            455666665432      56778877654322  122111112222  2367788888865     34677887764422


Q ss_pred             ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe--C-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEE
Q 001311          926 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--E-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV  998 (1102)
Q Consensus       926 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l  998 (1102)
                      ....+...       ..-.++ ..-+++..+.|+  .     +.+..||..+++....-.... ...-.+ +...+++.+
T Consensus       372 ~~~~lp~~-------r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~-~~~~~~~iy  441 (534)
T PHA03098        372 EEPPLIFP-------RYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGC-AIYHDGKIY  441 (534)
T ss_pred             eCCCcCcC-------CccceE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCce-EEEECCEEE
Confidence            11111110       011122 233556555542  1     468899988776543321111 111112 223367777


Q ss_pred             EEEeCC--------CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-----CcEEEEec
Q 001311          999 YACFLD--------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEP 1065 (1102)
Q Consensus       999 ~s~s~D--------g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----g~v~vW~~ 1065 (1102)
                      +.|+.+        ..+.+||..+++-...-.    .+......  .  .+.+   ++.+++.|+.+     +.|.++|+
T Consensus       442 v~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~~r~~~--~--~~~~---~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        442 VIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNFPRINA--S--LCIF---NNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             EECCccCCCCCcccceEEEecCCCCceeeCCC----CCcccccc--e--EEEE---CCEEEEEcCCcCCcccceeEEEeC
Confidence            777643        238888988775443211    11110011  1  2222   46788888765     46788887


Q ss_pred             cCCCcccccC
Q 001311         1066 LESEGKWGVP 1075 (1102)
Q Consensus      1066 ~~~~~~~~~~ 1075 (1102)
                      .+.+  |...
T Consensus       511 ~~~~--W~~~  518 (534)
T PHA03098        511 KTNT--WTLF  518 (534)
T ss_pred             CCCE--EEec
Confidence            7654  6543

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=93.93  E-value=20  Score=43.76  Aligned_cols=105  Identities=13%  Similarity=0.134  Sum_probs=64.7

Q ss_pred             EEEecCCCeEEEEeCCeEEEEEcCCCceeeee--cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeecc
Q 001311          812 FALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKG  888 (1102)
Q Consensus       812 l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~  888 (1102)
                      .++.|-..++.+|-...+++||+...+.++..  +.....|+.+.+.   +..+++|+.--.|..+..+. ++.+..+.+
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence            45567777888888899999999876665543  3235567777774   45777777666666544432 223333322


Q ss_pred             --ccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          889 --HSKRITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       889 --h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                        -...|+++.+- |-..+|.++.=|.+.+-.+.
T Consensus      1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence              22346666554 55567777766766666554

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.80  E-value=2.1  Score=50.28  Aligned_cols=125  Identities=10%  Similarity=0.098  Sum_probs=78.1

Q ss_pred             cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee-cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC
Q 001311          454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG  532 (1102)
Q Consensus       454 ~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~  532 (1102)
                      ...+-+.-|.-++  ..+..+....+.|||.+.+.....-. ...+.|.++.|...++++.+++.|..+.|.++.-....
T Consensus        30 ~~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            3455555555566  34444455689999999887554322 35788999999999999999999999999998432111


Q ss_pred             CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001311          533 SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  591 (1102)
Q Consensus       533 ~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  591 (1102)
                      .... ...-..+..+.        +..++..+|....|.++|..++.+  ++.+.|+|-
T Consensus       108 y~~~-~p~w~~i~~i~--------i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  108 YTNK-GPSWAPIRKID--------ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             hhcC-CcccceeEEEE--------eecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            0000 00011222222        233444567777888887655544  356888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=93.67  E-value=13  Score=40.78  Aligned_cols=165  Identities=12%  Similarity=0.093  Sum_probs=92.1

Q ss_pred             CCCeeEEEEecCCCcEEEEEeCCCc------EEEEEeec--c--eee-----eeeccccc--------cceeEEEecCCC
Q 001311          847 PPAATFLAFHPQDNNIIAIGMDDSS------IQIYNVRV--D--EVK-----SKLKGHSK--------RITGLAFSHALN  903 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~~dg~------v~vwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~d~~  903 (1102)
                      -+.+..+++.+.++.+++ .+++|.      ++.+++..  +  ..+     ..+..-.+        ..-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~~~~a-vSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYA-VSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCCEEEE-EECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            356788999873555444 566776      66666543  1  001     11222122        234788888888


Q ss_pred             EEEEEcCC------CcEEEEEcCCCcccceeeeecCC-------CCCCCCCCCcEEEEccCCcEEEEEe------CC--e
Q 001311          904 VLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPT-------GRTPTAQSDTRVQFHQDQIHFLVVH------ET--Q  962 (1102)
Q Consensus       904 ~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~spdg~~l~~~~------d~--~  962 (1102)
                      ++++.=.+      ..|+.++.. +.......+...-       ...........++++|||+.|.++.      |+  .
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88887666      778888866 4432221111100       1122335678999999999555431      22  1


Q ss_pred             -------EEE--EEcCC-ceEeeeecc--CC-----CCCCeeEEEEcCCCcEEEEEe-----CCCeEEEEEcC
Q 001311          963 -------LAI--FETTK-LECVKQWVP--RE-----SSAPITHATFSCDSQLVYACF-----LDATVCVFSAA 1013 (1102)
Q Consensus       963 -------i~i--wd~~~-~~~~~~~~~--~~-----h~~~v~~l~~spd~~~l~s~s-----~Dg~I~vwd~~ 1013 (1102)
                             +++  ||..+ ++....+..  ..     ....|..+.+-+|+++|+.-=     ....++|+.+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                   444  45544 323333322  11     357889999999999877432     23456666543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.64  E-value=1.2  Score=52.08  Aligned_cols=120  Identities=10%  Similarity=0.134  Sum_probs=74.2

Q ss_pred             CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec-cccccceeEEEe--cCCCEEEEEcCCCcEEEEEcCCC-
Q 001311          847 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGLAFS--HALNVLVSSGADSQLCVWSSDGW-  922 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~i~vwd~~~~-  922 (1102)
                      ...++-+.-|. -++..++-+....+.|||...+.+...-. ...+.|.++.|.  ||++.+++.|-...|.++.-... 
T Consensus        29 i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   29 ISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            34455555555 44454444445589999998876433221 346789999986  78999999999999999854211 


Q ss_pred             ---cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEc
Q 001311          923 ---EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET  968 (1102)
Q Consensus       923 ---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~  968 (1102)
                         .......+....-...++.+|.+..|.++|.+++. ..+++.|+|-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~-sGNqlfv~dk  155 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVG-SGNQLFVFDK  155 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEE-eCCEEEEECC
Confidence               11111112211111112257889999999986654 4567788764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.41  E-value=16  Score=40.99  Aligned_cols=153  Identities=10%  Similarity=0.051  Sum_probs=84.2

Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEeeccee-eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccce-
Q 001311          850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKN-  927 (1102)
Q Consensus       850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~-  927 (1102)
                      ...+..++ |+.+++.|..-..++-||-.. .. ...-......++++.|.+++..++++ .+|.+. |....++.-.. 
T Consensus       241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~G~-~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~  316 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSRGNFYLTWEPGQ-PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VSKGTGLTEEDF  316 (398)
T ss_pred             eeeEEEcC-CCCEEEEECCccEEEecCCCC-cceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-EecCCCCccccc
Confidence            34455666 777777665333333344221 10 11112234568899999998887765 556543 44444321100 


Q ss_pred             eeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeec-cCCCCCCeeEEEEcCCCcEEEEEeCCCe
Q 001311          928 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFLDAT 1006 (1102)
Q Consensus       928 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~spd~~~l~s~s~Dg~ 1006 (1102)
                      ........  .....+..+.|.+++..++++..|.+.... ..|+.-.... ...-....+.+.|.++++.+++| .+|.
T Consensus       317 ~f~~~~~~--~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~  392 (398)
T PLN00033        317 DFEEADIK--SRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGV  392 (398)
T ss_pred             ceeecccC--CCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcE
Confidence            01111100  011257889999999999999888776653 3333322211 11224578899998887776665 6888


Q ss_pred             EEEE
Q 001311         1007 VCVF 1010 (1102)
Q Consensus      1007 I~vw 1010 (1102)
                      |.-|
T Consensus       393 il~~  396 (398)
T PLN00033        393 LLRY  396 (398)
T ss_pred             EEEe
Confidence            7655

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.27  E-value=9.4  Score=38.99  Aligned_cols=192  Identities=13%  Similarity=0.128  Sum_probs=121.8

Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceee
Q 001311          850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRF  929 (1102)
Q Consensus       850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~  929 (1102)
                      -..++-+| ||..-.++...|.|--.|-.+|+....--+....-..|..-|||..-++-+.. -|.-.|-++.+..+   
T Consensus        64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~---  138 (353)
T COG4257          64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR---  138 (353)
T ss_pred             ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE---
Confidence            45667778 88888888888888888888888766655555555667788888766654443 35555655544322   


Q ss_pred             eecCCCCCCCCCCCcEEEEccCCcEEEEEeCC----------eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEE
Q 001311          930 LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET----------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY  999 (1102)
Q Consensus       930 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~----------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~  999 (1102)
                      ......+.  ........|.+.|++-+++..|          .|++|+..            .....+.||..|||...+
T Consensus       139 f~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP------------qG~gpyGi~atpdGsvwy  204 (353)
T COG4257         139 FPLPLEHA--DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP------------QGGGPYGICATPDGSVWY  204 (353)
T ss_pred             eecccccC--CCcccceeeCCCccEEEeeccccceecCcccCceeeeccC------------CCCCCcceEECCCCcEEE
Confidence            22222222  2467889999999999886443          34444432            245677889999999888


Q ss_pred             EEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1000 ACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1000 s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +.-.+..|..-|..++.. ..+....-+..+     ..  .+--+| -+..-+|....+.++.+|.++..
T Consensus       205 aslagnaiaridp~~~~a-ev~p~P~~~~~g-----sR--riwsdp-ig~~wittwg~g~l~rfdPs~~s  265 (353)
T COG4257         205 ASLAGNAIARIDPFAGHA-EVVPQPNALKAG-----SR--RIWSDP-IGRAWITTWGTGSLHRFDPSVTS  265 (353)
T ss_pred             EeccccceEEcccccCCc-ceecCCCccccc-----cc--ccccCc-cCcEEEeccCCceeeEeCccccc
Confidence            877777888778777632 233322222222     11  233334 36677777777888888876655

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.24  E-value=2.4  Score=41.12  Aligned_cols=183  Identities=11%  Similarity=0.109  Sum_probs=102.0

Q ss_pred             CCcEEEEEeCCC--cEEEEEeecceeeeeeccccccceeEEEecCCCEEEE-EcCCCcEEEEEcCCCcccceeeeecCCC
Q 001311          859 DNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIPTG  935 (1102)
Q Consensus       859 d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~~~  935 (1102)
                      ++.++.+.+.-|  .|++||+.+++.+..-.-....+..=-...-+.++.. .=.||.-.++|.++.+......   .  
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~---y--  129 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS---Y--  129 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc---c--
Confidence            567777665443  7999999988876543222122221111111223222 2247778888888754322111   1  


Q ss_pred             CCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCC---eeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          936 RTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAP---ITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       936 ~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~---v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                            .=.......|++.|+.+ ....++.-|.++.....+........+   ++.+.|- ||...|-.=.+..|..-+
T Consensus       130 ------~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~  202 (262)
T COG3823         130 ------EGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARID  202 (262)
T ss_pred             ------CCcceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEc
Confidence                  11344556677767665 455676667766544443322111222   3334443 677777666667777778


Q ss_pred             cCCceeEEEeCCCcccCCCC----CCCcccceEEEecCCCCCEEEEEe
Q 001311         1012 AANLKLRCRINPSAYLPAGV----SSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus      1012 ~~~~~~~~~~~~~~~~~~gh----~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
                      .++|+.+.-+..+.....-.    .....+  .|++.|+.+++++||-
T Consensus       203 p~sGrV~~widlS~L~~~~~~~~~~~nvlN--GIA~~~~~~r~~iTGK  248 (262)
T COG3823         203 PDSGRVVAWIDLSGLLKELNLDKSNDNVLN--GIAHDPQQDRFLITGK  248 (262)
T ss_pred             CCCCcEEEEEEccCCchhcCcccccccccc--ceeecCcCCeEEEecC
Confidence            89999888777555443321    111133  8999997767888873

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.07  E-value=0.96  Score=54.69  Aligned_cols=146  Identities=12%  Similarity=0.103  Sum_probs=94.1

Q ss_pred             CCCeeEEEEecCCCeEEEEe--C-CeEEEEEcCCCceee-----eecCC------CCCeeEEEEecCCCcEEEEEeCCCc
Q 001311          806 EEAVPCFALSKNDSYVMSAS--G-GKISLFNMMTFKTMA-----TFMPP------PPAATFLAFHPQDNNIIAIGMDDSS  871 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s--d-g~I~iwd~~~~~~~~-----~~~~~------~~~i~~l~~sp~d~~~lasg~~dg~  871 (1102)
                      ..++..+++.+|+...++..  + ..|..||+++...-.     .|..|      ..-..++.|.|.=.-..|....|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            44567777888877666554  3 369999987543221     12222      2235677888743445667788999


Q ss_pred             EEEEEeecce-eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311          872 IQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       872 v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      |+|..+.-.. ....+. -...+++++|+|.|+.++.|-..|++.-|......+..   +  +.-.......|.+++|-.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---i--p~Pp~~e~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---I--PEPPVEENYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---c--cCCCcCCCcceeEEEEec
Confidence            9988765321 122222 45668999999999999999999999988765422111   1  111111125789999998


Q ss_pred             CCcEEEE
Q 001311          951 DQIHFLV  957 (1102)
Q Consensus       951 dg~~l~~  957 (1102)
                      .-.++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8888887

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.04  E-value=3.6  Score=46.17  Aligned_cols=147  Identities=10%  Similarity=0.110  Sum_probs=79.0

Q ss_pred             cceeEEEecCCCEEEEEc-----------CCC-cEEEEEcCCC--cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          892 RITGLAFSHALNVLVSSG-----------ADS-QLCVWSSDGW--EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s-----------~Dg-~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      ...+|+|.++|+++++-.           ..+ .|.+++-..+  ...+...+  ..+.    .....+++.++| ++++
T Consensus        15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf--a~~l----~~p~Gi~~~~~G-lyV~   87 (367)
T TIGR02604        15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF--AEEL----SMVTGLAVAVGG-VYVA   87 (367)
T ss_pred             CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe--ecCC----CCccceeEecCC-EEEe
Confidence            456789999988877753           223 6777765432  22111111  1111    245789999999 4444


Q ss_pred             EeCCeEEEE-EcCCc-----e--Ee-eeeccCC--CCCCeeEEEEcCCCcEEEEEeCC-------------------CeE
Q 001311          958 VHETQLAIF-ETTKL-----E--CV-KQWVPRE--SSAPITHATFSCDSQLVYACFLD-------------------ATV 1007 (1102)
Q Consensus       958 ~~d~~i~iw-d~~~~-----~--~~-~~~~~~~--h~~~v~~l~~spd~~~l~s~s~D-------------------g~I 1007 (1102)
                      . ...|..| |....     +  .+ ..+....  +......++|.|||.+.++-+..                   |.|
T Consensus        88 ~-~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i  166 (367)
T TIGR02604        88 T-PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGL  166 (367)
T ss_pred             C-CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceE
Confidence            3 3345444 54321     1  11 1222110  23457889999999877755521                   345


Q ss_pred             EEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCC
Q 001311         1008 CVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus      1008 ~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
                      .-++.++++.. .+.      .|+    ..+..++|+| +++++++-..++
T Consensus       167 ~r~~pdg~~~e-~~a------~G~----rnp~Gl~~d~-~G~l~~tdn~~~  205 (367)
T TIGR02604       167 FRYNPDGGKLR-VVA------HGF----QNPYGHSVDS-WGDVFFCDNDDP  205 (367)
T ss_pred             EEEecCCCeEE-EEe------cCc----CCCccceECC-CCCEEEEccCCC
Confidence            55555554432 111      221    3355899999 678877655443

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.01  E-value=0.15  Score=59.53  Aligned_cols=164  Identities=13%  Similarity=0.154  Sum_probs=96.7

Q ss_pred             cCCCCeeEEEEe----cCCCeEEEEEecCCeEEEEeCCC--CeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311          344 NQGSSPMSMDFH----PVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       344 ~h~~~v~~v~~s----pdg~~llasg~~d~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      +..+.|-.++|-    |.+.. ++     |...|||+.-  |+......+.+              ...-...+.-+.|.
T Consensus       130 gf~G~v~dl~fah~~~pk~~~-~v-----g~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wc  189 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGRR-LV-----GELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWC  189 (1283)
T ss_pred             cCCCCcccccccccCChHHHH-Hh-----hhhheeehHhhccccccceEEee--------------cCcCCCCcceeeec
Confidence            355677777773    44442 22     7788998853  44433322221              22223334455555


Q ss_pred             c---CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEE-----------EcCCCCeeEEEEecCCCcEEEEe
Q 001311          418 P---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA-----------FSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       418 p---dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~-----------~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      |   +.-++..+-.+++|++..+.+...  .  .+.+|...+..++           .||||+  .+++++.||.++.|.
T Consensus       190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Q  263 (1283)
T KOG1916|consen  190 PIAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQ  263 (1283)
T ss_pred             ccccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceee
Confidence            5   777888888889999887766443  1  2557888777665           478898  789999999888886


Q ss_pred             CC-----CCeeeEEeecCCCCeEEEeeeecCC---------ccEEEEEeC-CCeEEEEEcCCCCCe
Q 001311          484 AT-----NGAKQYIFEGHEAPVYSVCPHHKEN---------IQFIFSTAL-DGKIKAWLYDNLGSR  534 (1102)
Q Consensus       484 ~~-----~~~~~~~~~~h~~~v~~v~~~~~~~---------~~~l~s~s~-dg~i~~wd~~~~~~~  534 (1102)
                      +.     ...|++..+.|++.-. +||.....         -.+++++++ ...+++|.-..-.+.
T Consensus       264 iyi~g~~~~rclhewkphd~~p~-vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  264 IYITGKIVHRCLHEWKPHDKHPR-VCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeeccccHhhhhccCCCCCCCc-eeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            54     2345566677774322 23332221         123445444 456888865544443

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=93.01  E-value=0.022  Score=61.67  Aligned_cols=148  Identities=18%  Similarity=0.216  Sum_probs=98.5

Q ss_pred             EEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311          743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  822 (1102)
Q Consensus       743 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la  822 (1102)
                      ....+.+.+..++.++.+..+..||-.                       |+.+..    .........++|+.++..++
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~a-----------------------gq~~le----~n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKA-----------------------GQVILE----LNPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhh-----------------------cceecc----cCCchhHhhhhhccccchhh
Confidence            345566666668888888777777631                       111110    11344566778888887766


Q ss_pred             EEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEec
Q 001311          823 SAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  900 (1102)
Q Consensus       823 s~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~  900 (1102)
                      ...  .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.||+..+.+.+..+-.|..+++++++.+
T Consensus        91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l  169 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL  169 (615)
T ss_pred             hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence            654  68899999976332211111112222278999 889999999999999999887766666555999999999998


Q ss_pred             CCCEEEEEcCCCcEEEEEc
Q 001311          901 ALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       901 d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      .+ +.+.++.|..+.+-..
T Consensus       170 Ed-~vil~dcd~~L~v~~q  187 (615)
T KOG2247|consen  170 ED-YVILCDCDNTLSVTTQ  187 (615)
T ss_pred             cc-eeeecCcHHHHHHhhh
Confidence            76 5666777765554433

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=92.96  E-value=3.3  Score=45.71  Aligned_cols=150  Identities=14%  Similarity=0.110  Sum_probs=89.8

Q ss_pred             CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC------CccEEEEEeCCCeEEEEEcCCCCCeeee
Q 001311          464 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE------NIQFIFSTALDGKIKAWLYDNLGSRVDY  537 (1102)
Q Consensus       464 d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~------~~~~l~s~s~dg~i~~wd~~~~~~~~~~  537 (1102)
                      ++..+++..|+....++--|++.|+.+..+.-|...|  +.+.+..      +.+.|+--| +..|.-.|.+..+.....
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEecccccCCceee
Confidence            3444466677777888899999999999998887764  3443321      223344444 455544555543321111


Q ss_pred             cCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC
Q 001311          538 EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD  617 (1102)
Q Consensus       538 ~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  617 (1102)
                      ......++.-.|                .+.. .....++++++..|.|++||.-..+....+++-+.  .|..+..+.+
T Consensus       554 ~esKdY~tKn~F----------------ss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~--aIk~idvta~  614 (776)
T COG5167         554 VESKDYKTKNKF----------------SSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD--AIKHIDVTAN  614 (776)
T ss_pred             eeehhccccccc----------------cccc-cccCceEEEecCCCceeeehhhcchhhhcCccccc--ceeeeEeecC
Confidence            111111111111                1111 11235799999999999999765554455554444  6888999999


Q ss_pred             CCEEEEEECCCcEEEEEcc
Q 001311          618 GCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       618 ~~~l~~~~~dg~i~iwd~~  636 (1102)
                      |+++++.+. ..+.+.|+.
T Consensus       615 Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         615 GKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             CcEEEEeec-ceEEEEecc
Confidence            999988775 467777764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.71  E-value=3  Score=46.75  Aligned_cols=151  Identities=13%  Similarity=0.053  Sum_probs=81.8

Q ss_pred             CCeeEEEEecCCCcEEEEEe-----------CCC-cEEEEEeec--ce--eeeeeccccccceeEEEecCCCEEEEEcCC
Q 001311          848 PAATFLAFHPQDNNIIAIGM-----------DDS-SIQIYNVRV--DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD  911 (1102)
Q Consensus       848 ~~i~~l~~sp~d~~~lasg~-----------~dg-~v~vwd~~~--~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  911 (1102)
                      .....|+|.+ +|+++++-.           ..+ .|.+++-.+  |+  ....+........+|++.++| +++ ++..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence            4567888888 787776542           223 677776443  22  123333333456889999998 444 4444


Q ss_pred             CcEEEEEcCCCcc---cceeeeecCCCC-CCCCCCCcEEEEccCCcEEEE-EeC-------------------CeEEEEE
Q 001311          912 SQLCVWSSDGWEK---QKNRFLQIPTGR-TPTAQSDTRVQFHQDQIHFLV-VHE-------------------TQLAIFE  967 (1102)
Q Consensus       912 g~i~vwd~~~~~~---~~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~-~~d-------------------~~i~iwd  967 (1102)
                      ...++.+.+....   ....++..+... .........++|.|||.+.++ +..                   +.|.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            4333435443211   111222222221 001134678999999987776 311                   3455555


Q ss_pred             cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311          968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus       968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
                      ..+++.. .+. .+ -.....++|+++|+++++-..+
T Consensus       171 pdg~~~e-~~a-~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       171 PDGGKLR-VVA-HG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             cCCCeEE-EEe-cC-cCCCccceECCCCCEEEEccCC
Confidence            5554432 222 23 3456789999999988765533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=92.51  E-value=33  Score=42.11  Aligned_cols=113  Identities=11%  Similarity=0.015  Sum_probs=70.9

Q ss_pred             cEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE--EEEcCCceeEEEe
Q 001311          944 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC--VFSAANLKLRCRI 1021 (1102)
Q Consensus       944 ~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~--vwd~~~~~~~~~~ 1021 (1102)
                      .-.++.|...++.++....+++||+...+..+......-...|+.+++  .+..+++|...-.|.  .|+-+..+++. +
T Consensus       937 ~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~l~~-f 1013 (1205)
T KOG1898|consen  937 PVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQLIV-F 1013 (1205)
T ss_pred             cceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCeEEE-E
Confidence            345677777788888888999999988777666544333567778777  466777776555544  45544454443 2


Q ss_pred             CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      . ....+.+     |.  .+.+-  |-..++.+..-|.+.+-++...-
T Consensus      1014 a-dD~~pR~-----Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~ 1051 (1205)
T KOG1898|consen 1014 A-DDPVPRH-----VT--ALELL--DYDTVAGADRFGNIAVVRIPPDV 1051 (1205)
T ss_pred             e-CCCccce-----ee--EEEEe--cCCceeeccccCcEEEEECCCcc
Confidence            2 2222222     33  44444  45678888777888887775543

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=92.47  E-value=14  Score=37.79  Aligned_cols=242  Identities=11%  Similarity=0.071  Sum_probs=144.8

Q ss_pred             CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      .......++-++||..-.++. .+.|--.|-.+++....--+.......|...| |+..-++-+.. -|.-.|-++.+. 
T Consensus        60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~ev-  136 (353)
T COG4257          60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEV-  136 (353)
T ss_pred             CCCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccce-
Confidence            345567788889998877777 67788888888887766666666677888888 55544442222 444455544432 


Q ss_pred             eee----ccccccceeEEEecCCCEEEEEcCC---------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311          884 SKL----KGHSKRITGLAFSHALNVLVSSGAD---------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       884 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~D---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      .++    +.-........|.++|.+-+++...         +.|+||+...             |.     ....++..|
T Consensus       137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-------------G~-----gpyGi~atp  198 (353)
T COG4257         137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-------------GG-----GPYGICATP  198 (353)
T ss_pred             EEeecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-------------CC-----CCcceEECC
Confidence            222    2234556778899999888887532         3455555432             22     447899999


Q ss_pred             CCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCC
Q 001311          951 DQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPA 1029 (1102)
Q Consensus       951 dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 1029 (1102)
                      ||..-+++ .++.|...|..++.........+-...-..+--+|.|+.-++....+.+.-||-.+.. =..+.    +|.
T Consensus       199 dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eyp----LPg  273 (353)
T COG4257         199 DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYP----LPG  273 (353)
T ss_pred             CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeee----CCC
Confidence            99988875 6677777777776433322222212334445557778887877777777777765544 22333    222


Q ss_pred             CCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC-cccccCCC
Q 001311         1030 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE-GKWGVPPP 1077 (1102)
Q Consensus      1030 gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~-~~~~~~~~ 1077 (1102)
                      .  ...-+  ++.-.. .+..-.+--..|.|.-+|..+.. ..+..++|
T Consensus       274 s--~arpy--s~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~  317 (353)
T COG4257         274 S--KARPY--SMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP  317 (353)
T ss_pred             C--CCCcc--eeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC
Confidence            1  11122  232222 12333444455777777777666 55555555

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=92.29  E-value=0.13  Score=60.02  Aligned_cols=178  Identities=13%  Similarity=0.196  Sum_probs=99.2

Q ss_pred             CeEEEEEcC--CCceeee-----ecCCCCCeeEEEEecC--CCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEE
Q 001311          827 GKISLFNMM--TFKTMAT-----FMPPPPAATFLAFHPQ--DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA  897 (1102)
Q Consensus       827 g~I~iwd~~--~~~~~~~-----~~~~~~~i~~l~~sp~--d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~  897 (1102)
                      |.+.||++.  .|+....     .......+.-+.|.|.  +.-++..+..++.|++....... ...+.+|+..++.++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~-~~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL-RSLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH-HHHHHhcCCCcccHH
Confidence            678888875  2332222     1222233444444431  45677778888999887766533 245566887777665


Q ss_pred             -----------EecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC-------Cc--EEEE
Q 001311          898 -----------FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-------QI--HFLV  957 (1102)
Q Consensus       898 -----------~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-------g~--~l~~  957 (1102)
                                 .||||+.+|.++.||.++.|.+.-......+++.....|..  .+-.+.-|..+       |.  ++++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~--~p~vC~lc~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK--HPRVCWLCHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC--CCceeeeeccccccCCccceeEEEEe
Confidence                       48999999999999999999876433333334333333321  12222223332       22  2333


Q ss_pred             E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc------------EEEEEeCCCeEEEEEc
Q 001311          958 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ------------LVYACFLDATVCVFSA 1012 (1102)
Q Consensus       958 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~------------~l~s~s~Dg~I~vwd~ 1012 (1102)
                      +  .+..+++|.....+|.-.+.    -..|..+. -+||+            .+++-+-|++|.+|.=
T Consensus       310 ttd~nre~k~w~~a~w~Cll~~~----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn  373 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEAPWQCLLDKL----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQN  373 (1283)
T ss_pred             cccCCcceeEeeccchhhhhhhc----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhc
Confidence            3  34578888877776652221    12233333 22332            1344556788888853

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=92.16  E-value=3.8  Score=49.66  Aligned_cols=84  Identities=11%  Similarity=0.175  Sum_probs=55.1

Q ss_pred             CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC----------Cc--eeEEE-eCCCcccCCCCCCCcccceEEEecCC--C
Q 001311          983 SAPITHATFSCDSQLVYACFLDATVCVFSAA----------NL--KLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQ--E 1047 (1102)
Q Consensus       983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~----------~~--~~~~~-~~~~~~~~~gh~~~~v~~~~v~f~p~--d 1047 (1102)
                      .-.|..+.++|+|++|+..+..|. .|-.+.          .|  ...|+ +.....+...  +.......+.|+|.  +
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v-~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~--~~~~~i~qv~WhP~s~~  160 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGV-VVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTS--NSSLEIKQVRWHPWSES  160 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcE-EEEEeccccCccccccCCCcceeEEEEEechhhccC--CCCceEEEEEEcCCCCC
Confidence            457889999999999999987664 333332          11  22332 2222223222  22244558999996  2


Q ss_pred             CCEEEEEecCCcEEEEeccCCC
Q 001311         1048 PNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1048 ~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +..|+.-.+|+++++||+....
T Consensus       161 ~~~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  161 DSHLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             CCeEEEEecCCEEEEEecCCCC
Confidence            4678888999999999998766

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PHA02790 Kelch-like protein; Provisional

Probab=91.98  E-value=9.4  Score=44.61  Aligned_cols=185  Identities=6%  Similarity=-0.048  Sum_probs=94.3

Q ss_pred             CCcEEEEEeCCC-----cEEEEEeeccee--eeeeccccccceeEEEecCCCEEEEEcCC--CcEEEEEcCCCcccceee
Q 001311          859 DNNIIAIGMDDS-----SIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRF  929 (1102)
Q Consensus       859 d~~~lasg~~dg-----~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~  929 (1102)
                      ++.++++|+.++     .+..||..+++-  +..+........ ++ .-++...+.||.+  ..+..||..+++-   ..
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~-~v-~~~~~iYviGG~~~~~sve~ydp~~n~W---~~  345 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYAS-GV-PANNKLYVVGGLPNPTSVERWFHGDAAW---VN  345 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcce-EE-EECCEEEEECCcCCCCceEEEECCCCeE---EE
Confidence            567777787653     566788776542  222322221122 22 3467777888764  3577788655332   11


Q ss_pred             eecCCCCCCCCCCCcEEEEccCCcEEEEE-eC---CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC
Q 001311          930 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE---TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1005 (1102)
Q Consensus       930 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d---~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg 1005 (1102)
                      .......     .....+..-+|+..+.| .+   ..+..||..+.+....-........ .++ ..-+|+..+.|   |
T Consensus       346 ~~~l~~~-----r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~-~~~~~~IYv~G---G  415 (480)
T PHA02790        346 MPSLLKP-----RCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCA-LVFGRRLFLVG---R  415 (480)
T ss_pred             CCCCCCC-----CcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceE-EEECCEEEEEC---C
Confidence            1111110     11122233456666663 32   3577899887765443222111111 122 23467776766   4


Q ss_pred             eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001311         1006 TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1069 (1102)
Q Consensus      1006 ~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1069 (1102)
                      .+.+||..+++-... .   .++..+...     +++..  ++.+.+.||.+     .+|..+|+.+.+
T Consensus       416 ~~e~ydp~~~~W~~~-~---~m~~~r~~~-----~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~  473 (480)
T PHA02790        416 NAEFYCESSNTWTLI-D---DPIYPRDNP-----ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS  473 (480)
T ss_pred             ceEEecCCCCcEeEc-C---CCCCCcccc-----EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence            577899877654421 1   122211111     22322  46888888865     357788887765

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.93  E-value=13  Score=43.57  Aligned_cols=182  Identities=8%  Similarity=0.116  Sum_probs=96.3

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeee----ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      .+..+.|+.+..+|++.-+|++++|++-... +..    +......|..+.|.. +|-.+  -..+|.|.+-+-.....+
T Consensus        85 ~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~-~GVav--lt~~g~v~~i~~~~~~~~  160 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICVQKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFH-NGVAV--LTVSGQVILINGVEEPKL  160 (829)
T ss_pred             CeeeecccCCceEEEEeccceEEEeecchhh-hcccccccccccCceeEEEEec-CceEE--EecCCcEEEEcCCCcchh
Confidence            7889999999988888889999999985322 222    122334455555555 55333  344566655432222223


Q ss_pred             eeecc-ccccceeEEEe--cCCC---EEEEEc-CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311          884 SKLKG-HSKRITGLAFS--HALN---VLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  956 (1102)
Q Consensus       884 ~~l~~-h~~~V~~l~~s--~d~~---~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  956 (1102)
                      .++.. .......-+|+  +++.   .++-.. ..+ ..+.-.+...   .........    ...+..+..||+.++|+
T Consensus       161 ~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~---~q~~~~~~~----~~~~~ki~VS~n~~~la  232 (829)
T KOG2280|consen  161 RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR---VQLHALSWP----NSSVVKISVSPNRRFLA  232 (829)
T ss_pred             hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc---ccccccCCC----CceEEEEEEcCCcceEE
Confidence            33322 11222222332  2211   111111 111 1122222211   111111111    13678899999999999


Q ss_pred             E-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          957 V-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       957 ~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                      . ...|.|.+-+.+..++...+.+..|. +...++|.         +.|..+.+|.
T Consensus       233 Lyt~~G~i~~vs~D~~~~lce~~~~~~~-~p~qm~Wc---------gndaVvl~~e  278 (829)
T KOG2280|consen  233 LYTETGKIWVVSIDLSQILCEFNCTDHD-PPKQMAWC---------GNDAVVLSWE  278 (829)
T ss_pred             EEecCCcEEEEecchhhhhhccCCCCCC-chHhceee---------cCCceEEEEe
Confidence            8 68899999998888887777654433 22255554         4455555665

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.56  E-value=45  Score=41.62  Aligned_cols=174  Identities=11%  Similarity=0.137  Sum_probs=102.2

Q ss_pred             CCCCeeEEEEe---c----CCCeEEEEeCCeEEEEEcCCC---------------ceeeeecC---CCCCeeEEEEecCC
Q 001311          805 PEEAVPCFALS---K----NDSYVMSASGGKISLFNMMTF---------------KTMATFMP---PPPAATFLAFHPQD  859 (1102)
Q Consensus       805 ~~~~i~~l~~s---~----d~~~las~sdg~I~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~sp~d  859 (1102)
                      ...+|..|+|.   .    ..++|++-....+.|+...-.               ..+.++..   ...+...++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            46788888887   2    224777766777888872211               11222221   12346677888877


Q ss_pred             CcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCC
Q 001311          860 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  939 (1102)
Q Consensus       860 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  939 (1102)
                      .+.||+.+..|...||++.....     .+. ...          -+.....|.| +.|.+..                 
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~-----~~~-~~~----------~~~~~~~gsi-~~d~~e~-----------------  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPK-----RKS-SNL----------RLSRNISGSI-IFDPEEL-----------------  203 (765)
T ss_pred             cceEEEEeccCcEEEEEeccccc-----cCC-cce----------eeccCCCccc-cCCCccc-----------------
Confidence            77888888888888888721110     000 011          1111122222 2222110                 


Q ss_pred             CCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC--CcEEEEEeCCCeEEEEEcCCc
Q 001311          940 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       940 ~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd--~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                       ..-..+.|.++-..|+++....+.++|+.+......+........|..+.-+++  +..++..  ...|...++.+.
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~~  278 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKSS  278 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccCC
Confidence             123577888888888888888999999988766442222234678999999887  3333332  367888887763

These proteins are found in fungi.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.94  E-value=24  Score=41.61  Aligned_cols=180  Identities=12%  Similarity=0.130  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee--e--ccccccceeEEEecCCC
Q 001311          828 KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK--L--KGHSKRITGLAFSHALN  903 (1102)
Q Consensus       828 ~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~--l--~~h~~~V~~l~~s~d~~  903 (1102)
                      .|+||++. |+.+..+.-..+.+..+.|+. +. -|++-..||+++||++.. +.+..  .  ......|..+.|..+|-
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence            48888874 555555444445899999996 44 555678999999999863 22222  1  22223354455555553


Q ss_pred             EEEEEcCCCcEEE-EEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE--EeCC--eEEEEEcCC--ceEeee
Q 001311          904 VLVSSGADSQLCV-WSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV--VHET--QLAIFETTK--LECVKQ  976 (1102)
Q Consensus       904 ~l~s~s~Dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~--~~d~--~i~iwd~~~--~~~~~~  976 (1102)
                      .+.  ..+|.+.+ -+.+....  ...-.++ +...   .-.+...-+++.....  .-+-  ...++....  .+....
T Consensus       141 avl--t~~g~v~~i~~~~~~~~--~~~~diP-~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  141 AVL--TVSGQVILINGVEEPKL--RKMPDIP-YNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL  212 (829)
T ss_pred             EEE--ecCCcEEEEcCCCcchh--hhCCCCC-CccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence            333  33444433 33322111  0000001 1000   1122222222211111  1110  011111111  111111


Q ss_pred             eccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          977 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       977 ~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                       .  .....+..+.+||+.++|+-=..+|.|.+-+.+..+..+.++
T Consensus       213 -~--~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  213 -S--WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             -C--CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence             1  113578889999999999999999999999999988888777

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.88  E-value=19  Score=38.54  Aligned_cols=194  Identities=11%  Similarity=0.054  Sum_probs=0.0

Q ss_pred             eeEEEEecCCCeEEEEeCC-------------eEEEEEcCCCceeeeecCC------CCCeeEEEEecCCC----cEEEE
Q 001311          809 VPCFALSKNDSYVMSASGG-------------KISLFNMMTFKTMATFMPP------PPAATFLAFHPQDN----NIIAI  865 (1102)
Q Consensus       809 i~~l~~s~d~~~las~sdg-------------~I~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~----~~las  865 (1102)
                      |..+...+++++-+.=+..             +|.+||+.+.+.++++.-+      .+....+.+...++    .++..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE


Q ss_pred             EeCC-CcEEEEEeecceeeeeecccc-------------------ccceeEEEec---CCCEEEEEcCCCcEEEEEcCCC
Q 001311          866 GMDD-SSIQIYNVRVDEVKSKLKGHS-------------------KRITGLAFSH---ALNVLVSSGADSQLCVWSSDGW  922 (1102)
Q Consensus       866 g~~d-g~v~vwd~~~~~~~~~l~~h~-------------------~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~~  922 (1102)
                      .... +-|.|||+.+++..+.+..+.                   +.+.+++.+|   |+++|.-..-.+ -++|.+.+.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH


Q ss_pred             cccceeeeecC------CCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCC----ceEeeeeccCCCCCCeeEEEE
Q 001311          923 EKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTK----LECVKQWVPRESSAPITHATF  991 (1102)
Q Consensus       923 ~~~~~~~~~~~------~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~----~~~~~~~~~~~h~~~v~~l~~  991 (1102)
                      -..........      ..-.........++++++|....+ ...+.|..|+..+    ........-...-..+..+.+
T Consensus       162 ~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i  241 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI  241 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred             HhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeee


Q ss_pred             cC--CCcEEEEEeC
Q 001311          992 SC--DSQLVYACFL 1003 (1102)
Q Consensus       992 sp--d~~~l~s~s~ 1003 (1102)
                      .+  +|.+.+.++.
T Consensus       242 ~~~~~g~L~v~snr  255 (287)
T PF03022_consen  242 DPEGDGYLWVLSNR  255 (287)
T ss_dssp             -T--TS-EEEEE-S
T ss_pred             ccccCceEEEEECc

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=90.82  E-value=5.7  Score=45.77  Aligned_cols=77  Identities=16%  Similarity=0.316  Sum_probs=54.5

Q ss_pred             CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001311          408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  487 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~  487 (1102)
                      ...++++.-+|.|+-++.+..||.|++|++......+    +.....+-..+.|...|    |++...|+.+--|. +.|
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~-~dg   84 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWK-EDG   84 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheee-ccC
Confidence            3467888888999999999999999999987644321    22233455667776554    56667788888887 666


Q ss_pred             eeeEEe
Q 001311          488 AKQYIF  493 (1102)
Q Consensus       488 ~~~~~~  493 (1102)
                      -..+.|
T Consensus        85 vvqqqf   90 (1636)
T KOG3616|consen   85 VVQQQF   90 (1636)
T ss_pred             cchhhc
Confidence            555544

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.76  E-value=0.97  Score=31.62  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=27.0

Q ss_pred             CCeEEEEEccC-C--CeEEEEECCCeEEEEEccCC
Q 001311          409 VSVNRVIWSPD-G--SLFGVAYSRHIVQIYSYHGG  440 (1102)
Q Consensus       409 ~~V~~l~~spd-g--~~las~~~d~~v~vwd~~~~  440 (1102)
                      +.|.++.|||+ +  ++||.+-.-|.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            47899999984 4  58898888899999999864

It contains a characteristic DLL sequence motif.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=90.70  E-value=24  Score=37.02  Aligned_cols=205  Identities=9%  Similarity=0.073  Sum_probs=119.8

Q ss_pred             eeEEEEecCCCeEEEEe-CCeEEEEEcC------CC-ceeeeecC-----CCCCeeEEEEecCCCc------------EE
Q 001311          809 VPCFALSKNDSYVMSAS-GGKISLFNMM------TF-KTMATFMP-----PPPAATFLAFHPQDNN------------II  863 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s-dg~I~iwd~~------~~-~~~~~~~~-----~~~~i~~l~~sp~d~~------------~l  863 (1102)
                      .+.|+++|.+.+-++.. -+...+||..      .. .++-++..     .....+.+.|+. ...            .+
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNG-SDTFVVSGEGITGPSRF  103 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeC-CCceEEcCCCcccceeE
Confidence            57899999887666655 5889999986      11 22333332     234578888875 222            25


Q ss_pred             EEEeCCCcEEEEEeeccee-----eeeec-cccccc-eeEEEecC--CCEEEE-EcCCCcEEEEEcCCCcccceeeeecC
Q 001311          864 AIGMDDSSIQIYNVRVDEV-----KSKLK-GHSKRI-TGLAFSHA--LNVLVS-SGADSQLCVWSSDGWEKQKNRFLQIP  933 (1102)
Q Consensus       864 asg~~dg~v~vwd~~~~~~-----~~~l~-~h~~~V-~~l~~s~d--~~~l~s-~s~Dg~i~vwd~~~~~~~~~~~~~~~  933 (1102)
                      +.+++||+|.=|.-.-+..     ...+. ...+.| ..+++...  +.+|.. --..++|.|+|-.-.+.      ...
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~------~~~  177 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP------PLP  177 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc------cCC
Confidence            6678999999998532221     11222 112333 34665533  455544 44678999998554221      111


Q ss_pred             CCCCCC----CCCCcEEEEccCCcEEEE-E-------------eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC--
Q 001311          934 TGRTPT----AQSDTRVQFHQDQIHFLV-V-------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSC--  993 (1102)
Q Consensus       934 ~~~~~~----~~~v~~~~~spdg~~l~~-~-------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp--  993 (1102)
                      .....+    ......+.- -.+++.++ +             .-|.|-+||.. |..++.+...+.-...+.|+..|  
T Consensus       178 g~F~DP~iPagyAPFnIqn-ig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~  255 (336)
T TIGR03118       178 GSFIDPALPAGYAPFNVQN-LGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPES  255 (336)
T ss_pred             CCccCCCCCCCCCCcceEE-ECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhh
Confidence            001000    000011111 12333332 2             22578899875 66666666556667778888866  


Q ss_pred             ----CCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          994 ----DSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       994 ----d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                          .|.+|+---.||+|-+||..+|+.+..+.
T Consensus       256 FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~  288 (336)
T TIGR03118       256 FGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL  288 (336)
T ss_pred             hCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence                46677766679999999999999888776

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=90.69  E-value=16  Score=42.46  Aligned_cols=147  Identities=14%  Similarity=0.124  Sum_probs=76.0

Q ss_pred             CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311          868 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  947 (1102)
Q Consensus       868 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  947 (1102)
                      ..+...++|. .|.++..+.........+...++|.+++..+  ..+..+|+.+. ....  .....+..   .-=..+.
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~--~~l~~~~~---~~HHD~~  196 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWE--YDLPGGYY---DFHHDID  196 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEE--EE--TTEE----B-S-EE
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEe--eecCCccc---ccccccE
Confidence            3445555553 2444444432222222266778888887665  66888887653 2111  11221100   0115678


Q ss_pred             EccCCcEEEEEe--------------CCeEEEEEcCCceEeeeeccCCCC-------------------------CCeeE
Q 001311          948 FHQDQIHFLVVH--------------ETQLAIFETTKLECVKQWVPRESS-------------------------APITH  988 (1102)
Q Consensus       948 ~spdg~~l~~~~--------------d~~i~iwd~~~~~~~~~~~~~~h~-------------------------~~v~~  988 (1102)
                      .-|+|++|+.+.              +..|..+| .+|+.+..|....|-                         -.+.+
T Consensus       197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns  275 (477)
T PF05935_consen  197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS  275 (477)
T ss_dssp             E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred             ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence            889999998754              23567777 888888776543331                         24788


Q ss_pred             EEEcC-CCcEEEEEeCCCeEEEEEcCCceeEEEeCCC
Q 001311          989 ATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPS 1024 (1102)
Q Consensus       989 l~~sp-d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 1024 (1102)
                      +.+.+ ++.+|+++-.-..|...|..++++.-.+...
T Consensus       276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            99988 6666666655668999999999998877643

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.59  E-value=3.7  Score=50.06  Aligned_cols=100  Identities=15%  Similarity=0.151  Sum_probs=66.0

Q ss_pred             CeeEEEEecCCC--eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311          808 AVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       808 ~i~~l~~s~d~~--~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      ...++.|.|.-.  .++.-.|+.|++..+.-.....+--......+|++|+| .|+.+++|..+|++.-|... .+....
T Consensus       157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik~~  234 (1405)
T KOG3630|consen  157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIKSE  234 (1405)
T ss_pred             ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-cceeec
Confidence            345666766432  33333488888887653222211112456789999999 99999999999999988754 333333


Q ss_pred             ecc----ccccceeEEEecCCCEEEEEc
Q 001311          886 LKG----HSKRITGLAFSHALNVLVSSG  909 (1102)
Q Consensus       886 l~~----h~~~V~~l~~s~d~~~l~s~s  909 (1102)
                      +.+    ...+|.+|+|-....+||+-+
T Consensus       235 ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  235 IPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             ccCCCcCCCcceeEEEEecceeEEEEec
Confidence            322    247899999988777777643

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=90.46  E-value=0.16  Score=31.67  Aligned_cols=18  Identities=6%  Similarity=0.017  Sum_probs=15.4

Q ss_pred             chhHHhHHHHHHHHhhhc
Q 001311            3 KSSKKLFTSKHFLLEQES   20 (1102)
Q Consensus         3 ~~~~~g~~~s~~~l~~Es   20 (1102)
                      =|.++||.+||++|.+||
T Consensus        10 YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen   10 YLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHCT-HHHHHHHHHHT
T ss_pred             HHHHCCcHHHHHHHHhcC
Confidence            478999999999999997

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.23  E-value=6.9  Score=42.75  Aligned_cols=143  Identities=7%  Similarity=0.030  Sum_probs=89.3

Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEeecce---eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccc
Q 001311          850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK  926 (1102)
Q Consensus       850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~  926 (1102)
                      -+.+-|.  |.+....+...|.+.=|-++...   .+..-....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus        25 sngvFfD--DaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l  102 (657)
T KOG2377|consen   25 SNGVFFD--DANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL  102 (657)
T ss_pred             ccceeec--cCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence            3455565  33334445556667777665321   122223356799999999999999999999999999985533211


Q ss_pred             eeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc-eEeeeeccCCCCCCeeEEEEcCCCcEEEEE
Q 001311          927 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL-ECVKQWVPRESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus       927 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~-~~~~~~~~~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
                          .....+......|...+|+.. .-+|...+..+.+|.+... +.++...  .|.-.|.-..|.++-+.+..+
T Consensus       103 ----~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVk--s~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  103 ----EYTQECKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVK--SHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             ----HHHHHhccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhh--hcccCccEEEEccccceEeee
Confidence                111112222236888999887 5666667777777766432 2233322  567788888888887764433

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.22  E-value=20  Score=35.72  Aligned_cols=146  Identities=14%  Similarity=0.156  Sum_probs=84.2

Q ss_pred             cEEEEEeCCCcEEEEEeec--ceeeeeeccccccceeEEEecCCCEEEEEcCC---C---cEEEE---EcCCCcccceee
Q 001311          861 NIIAIGMDDSSIQIYNVRV--DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD---S---QLCVW---SSDGWEKQKNRF  929 (1102)
Q Consensus       861 ~~lasg~~dg~v~vwd~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---g---~i~vw---d~~~~~~~~~~~  929 (1102)
                      ..|..+...+.|.+|++..  .+.+..|..- +.|..+.++..|++|+|-=.+   .   .+|+|   +....+..... 
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~-  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR-  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-
Confidence            3444446678899999983  4455666543 789999999999999986432   1   45654   22211111100 


Q ss_pred             eecCCCC------------------CCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceE-ee-----eec---cCCC
Q 001311          930 LQIPTGR------------------TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC-VK-----QWV---PRES  982 (1102)
Q Consensus       930 ~~~~~~~------------------~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~-~~-----~~~---~~~h  982 (1102)
                       ....||                  .+....+.+++..|-.--|+++.++.+.+|.+..... ..     .+.   ...|
T Consensus       107 -vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~  185 (215)
T PF14761_consen  107 -VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI  185 (215)
T ss_pred             -EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence             000110                  0112356788888876667788888999998765443 11     111   0011


Q ss_pred             -CCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311          983 -SAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus       983 -~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
                       .-.+..++|.  +.|+|..+ |-.++|..+
T Consensus       186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             cCceEEEEEEE--eeEEEEec-CCEEEEEEE
Confidence             2335566664  56777665 566777654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.19  E-value=18  Score=36.08  Aligned_cols=112  Identities=13%  Similarity=0.210  Sum_probs=67.1

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC------cEEEE---E
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------SIQIY---N  876 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vw---d  876 (1102)
                      ....++.+..+.++++++.+.|.+|++.  ..+...+|..- +.|..++++. .|.+|++--++.      .+|+|   +
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~-~GDYlvTlE~k~~~~~~~fvR~Y~NWr   96 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSE-AGDYLVTLEEKNKRSPVDFVRAYFNWR   96 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecc-ccceEEEEEeecCCccceEEEEEEEhh
Confidence            3445555554445455668889999987  44556666643 7799999999 899999864332      55665   2


Q ss_pred             ee--cceee-eeeccc---------------------cccceeEEEecCCCEEEEEcCCCcEEEEEcCCC
Q 001311          877 VR--VDEVK-SKLKGH---------------------SKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  922 (1102)
Q Consensus       877 ~~--~~~~~-~~l~~h---------------------~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  922 (1102)
                      ..  ..+.+ ..+-||                     +..+.+++-.|-..-|+.|+ ++++.+|.+...
T Consensus        97 ~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen   97 SQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             hhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            22  11111 122232                     23566777776544444454 456999988653

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=90.04  E-value=26  Score=36.35  Aligned_cols=187  Identities=13%  Similarity=0.117  Sum_probs=0.0

Q ss_pred             CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec---ceeeeeeccccccc
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV---DEVKSKLKGHSKRI  893 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~---~~~~~~l~~h~~~V  893 (1102)
                      +++...+. +..++|+|+.+......+..-...=.+-.+.- .|++..++..|.-+.++|+.+   -.+..+.......-
T Consensus        96 e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v-sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~  174 (370)
T COG5276          96 EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV-SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDT  174 (370)
T ss_pred             ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe-cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCc


Q ss_pred             eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceE
Q 001311          894 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC  973 (1102)
Q Consensus       894 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~  973 (1102)
                      ..++.|  |++-..+..|+-+.|-|+..      ..-..+.++......+..+..+++-.+++...++ +.+-|..+.+.
T Consensus       175 ~~v~IS--Gn~AYvA~~d~GL~ivDVSn------p~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~ss  245 (370)
T COG5276         175 HDVAIS--GNYAYVAWRDGGLTIVDVSN------PHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPSS  245 (370)
T ss_pred             eeEEEe--cCeEEEEEeCCCeEEEEccC------CCCCeEEEEEecCCceEEEEecCCeeEEEEcccc-eEEEecCCCCC


Q ss_pred             eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311          974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      ...+..-....++.--.|.=-+++...+..+.-+-+-|+++
T Consensus       246 p~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn  286 (370)
T COG5276         246 PTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISN  286 (370)
T ss_pred             ceEeeccccCCcccccceecccceeeeeccccCceeEeccC

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.00  E-value=14  Score=44.05  Aligned_cols=116  Identities=8%  Similarity=0.075  Sum_probs=76.1

Q ss_pred             CeEEEEEcc--CCCeEEEEECCCeEEEEEccC-------C----------ceeeeEEEeeccccCEEEEEEc--CCCCee
Q 001311          410 SVNRVIWSP--DGSLFGVAYSRHIVQIYSYHG-------G----------DEVRQHLEIDAHVGGVNDIAFS--HPNKQL  468 (1102)
Q Consensus       410 ~V~~l~~sp--dg~~las~~~d~~v~vwd~~~-------~----------~~~~~~~~l~~h~~~V~~v~~s--~d~~~~  468 (1102)
                      .|+.|....  +...|+.|..||.|.+|.+++       .          ..+++...+. -...++.+++.  ...+  
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r--  178 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR--  178 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce--
Confidence            577776655  778899999999999997631       0          0011222232 23478899987  5555  


Q ss_pred             EEEEecCCCcEEEEeCCCC--eeeEE-eecCCCCeEEEeeeecC---Ccc-EEEEEeCCCeEEEEEc
Q 001311          469 CVITCGDDKTIKVWDATNG--AKQYI-FEGHEAPVYSVCPHHKE---NIQ-FIFSTALDGKIKAWLY  528 (1102)
Q Consensus       469 ~l~s~~~d~~i~vWd~~~~--~~~~~-~~~h~~~v~~v~~~~~~---~~~-~l~s~s~dg~i~~wd~  528 (1102)
                      +||.++....|.||-....  +.... -..|...|-+|+|....   +|. .+++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            7888888888888765442  11111 11256678889886654   232 7888899999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.89  E-value=7.3  Score=46.32  Aligned_cols=186  Identities=10%  Similarity=0.126  Sum_probs=98.6

Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      ..+|+++. .+.|.||+...-....       ...++..+...|.      .+...|+.+..|-  .        .|  .
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p-------~~~p~~~~~t~p~------~~~~~D~~~s~~p--~--------PH--t  102 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLP-------SRKPCLRFDTKPE------FTSTPDRLISTWP--F--------PH--T  102 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCccccc-------ccccccccccCcc------ccccccccccCCC--C--------Cc--e
Confidence            66777765 6889999986522110       1112222222221      2223344444443  1        12  2


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCC-CeeeEEEEccCCceeeeccccCceeEEEEc--CCCC
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPG-RWCTTMAYSADGTRTYQGFRKRSLGVVQFD--TTKN  575 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~-~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~--~~~~  575 (1102)
                      |+.+....-.+...|+.|.+||.|.+|.+++--... ...... .....+...|+    +.-.-....+.++++  ...+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~----f~~~v~~SaWGLdIh~~~~~r  178 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF----FHLRVGASAWGLDIHDYKKSR  178 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC----eEeecCCceeEEEEEecCcce
Confidence            444433334555789999999999999764311000 000000 00000111121    111223367778887  7777


Q ss_pred             EEEEEeCCCeEEEEECCCcc-eEEEEcCCCCCCCcCeEEEcCCC---C---EEEEEECCCcEEEEEc
Q 001311          576 RFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRIRFNKDG---C---LLAVSTNDNGIKILAT  635 (1102)
Q Consensus       576 ~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~s~~~---~---~l~~~~~dg~i~iwd~  635 (1102)
                      ++|+++....|.||-..... .......+.+...|.+|+|-++.   .   +|++++-.|.+.+|++
T Consensus       179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            88888888888888654421 11111112233468899997743   2   7888888999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.23  E-value=43  Score=37.67  Aligned_cols=200  Identities=10%  Similarity=-0.039  Sum_probs=103.3

Q ss_pred             EecCCCeEEEEeCCeEEEEEcCCCceeeeecCCC--CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-
Q 001311          814 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP--PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-  890 (1102)
Q Consensus       814 ~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~--~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-  890 (1102)
                      ...|++.++...+|.|.-.|..++..+.......  ..+..-.+.. +|+ |..++.+|.++.+|..+|+.+....... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            3456666665558888888888877654332221  2233333333 565 6678889999999988888877765544 


Q ss_pred             ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe--CCeEEEEEc
Q 001311          891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH--ETQLAIFET  968 (1102)
Q Consensus       891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--d~~i~iwd~  968 (1102)
                      -.+.+-..-.++ .+...+.|+.+...|..+++..-.........     ..+..-....++..++...  ++.+.-.|.
T Consensus       143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~-----~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLS-----LSIYGSPAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccc-----cccccCceeecceEEEecCCCcceEEEEEc
Confidence            112222222233 22233356666666666554321111110000     0111111133444444433  456777777


Q ss_pred             CCceEeeeecc---CCCCCCeeEEEEcCC-----CcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          969 TKLECVKQWVP---RESSAPITHATFSCD-----SQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       969 ~~~~~~~~~~~---~~h~~~v~~l~~spd-----~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .+|...-....   .+.. .+........     +.-+..++.++.+...|..+|+.+-++.
T Consensus       217 ~~G~~~w~~~~~~~~~~~-~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~  277 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRT-AISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFP  277 (370)
T ss_pred             cCCcEeeeeeeecccCcc-cccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEe
Confidence            77777655321   0111 1100111111     1223566778888889999999988776

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.20  E-value=1.2  Score=31.24  Aligned_cols=33  Identities=18%  Similarity=0.261  Sum_probs=26.7

Q ss_pred             CCeeEEEEecCCC--eEEEEEecCCeEEEEeCCCC
Q 001311          347 SSPMSMDFHPVQQ--TLLLVGTNVGDIGLWEVGSR  379 (1102)
Q Consensus       347 ~~v~~v~~spdg~--~llasg~~d~~i~iWd~~~~  379 (1102)
                      +.|.++.|||...  -||+....-+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999998544  46888888899999999853

It contains a characteristic DLL sequence motif.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.20  E-value=1.3  Score=30.50  Aligned_cols=33  Identities=12%  Similarity=0.220  Sum_probs=24.7

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecC--CeEEEE
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNV--GDIGLW  374 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d--~~i~iW  374 (1102)
                      .........+.+|||||++|+.+...+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            344566778999999999988888887  776666

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=88.87  E-value=64  Score=42.09  Aligned_cols=390  Identities=13%  Similarity=0.128  Sum_probs=0.0

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      |...++.|.-+|+|.++=+   .|+.++.||..+..-..                   .-..-...++.++-.-||+..|
T Consensus       361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~Wk~-------------------~~~~~d~~~S~Ls~qgdG~lYA  418 (1774)
T PF11725_consen  361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTARWKP-------------------PPDKSDTPFSSLSRQGDGKLYA  418 (1774)
T ss_pred             HHHHhhccccCCCCCeEEe---ecCceeeeccccceecC-------------------CCCcccchhhhhcccCCCceEe


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-----e---eeEEeecC
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-----A---KQYIFEGH  496 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-----~---~~~~~~~h  496 (1102)
                       =+.|.   |-|+..+....      ..-..|.+...+++|.- .++++-....+.+|++...     .   ..-.+.+-
T Consensus       419 -k~~~~---l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG  487 (1774)
T PF11725_consen  419 -KDDDT---LVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG  487 (1774)
T ss_pred             -cCCCc---eeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC


Q ss_pred             CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeE---EEEccCCceeeec---cccCceeEEEE
Q 001311          497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT---MAYSADGTRTYQG---FRKRSLGVVQF  570 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~---~~~s~~~~~~~~~---~~~~~i~~~~~  570 (1102)
                      .....+|.++.+.    |+.+..+|.++.=++...+.. ...........   +.-.-.+...+.|   ..++.+..+.=
T Consensus       488 ~a~A~~VgLs~dr----LFvADseGkLYsa~l~~~~~~-~~~l~~~p~~~~~~~~~~~G~~~~VtGF~~gd~G~lhAlik  562 (1774)
T PF11725_consen  488 KAQAQSVGLSNDR----LFVADSEGKLYSADLPAAQDN-EPKLKLMPEPAYQLLGSALGGDHKVTGFISGDDGQLHALIK  562 (1774)
T ss_pred             chhhhheeecCCe----EEEEeCCCCEEecccccccCC-CcceEeccccccccccccccccceeeccccCCCCeeeEEEe


Q ss_pred             cCCCCEEEEEeCCCeEEE---EECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311          571 DTTKNRFLAAGDDFSIKF---WDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       571 ~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                      +..|..-.+.-.+..-.+   |++..--.+..-.+-.....-..-..-.-++.=.++-.+|.|..||-.+.         
T Consensus       563 d~~GQ~Hs~aLde~~~~~~pGWNLSd~Lvl~N~~GL~~~~~p~~~~~ldl~r~G~v~L~~G~i~~wD~ttq---------  633 (1774)
T PF11725_consen  563 DRQGQRHSHALDEQGSQLQPGWNLSDALVLDNTRGLPKPPAPAPHEILDLGRAGLVGLQDGKIQYWDSTTQ---------  633 (1774)
T ss_pred             ccCCceeeccccccCCccCCCCcccceeEeeccCCCCCCCCCChHHhhccccccceeeccceEeeecCcch---------


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311          648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  727 (1102)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~  727 (1102)
                                    .|...+                               ..+...|--|-..+...+           
T Consensus       634 --------------~W~~~~-------------------------------~kd~~~L~RG~D~~AYVL-----------  657 (1774)
T PF11725_consen  634 --------------CWKDAG-------------------------------VKDIDQLKRGLDGNAYVL-----------  657 (1774)
T ss_pred             --------------hhhhcc-------------------------------CcCHHHHhccccCCceEe-----------


Q ss_pred             cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311          728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  807 (1102)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  807 (1102)
                                ..+.|..+.+++....+.-+...                       ...+-...+...+...+.+.. ..
T Consensus       658 ----------k~G~vk~l~i~~~~~~~~~g~~~-----------------------~~a~~~~r~~~e~G~~l~Gl~-~~  703 (1774)
T PF11725_consen  658 ----------KDGKVKRLSINQEHPSIAHGDNN-----------------------VFALPQRRNKVELGDALEGLE-DR  703 (1774)
T ss_pred             ----------cCCceeeeecccCCCccccCCCc-----------------------ccccccccCCCCCCccccCCC-cC


Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEE
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ  873 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~  873 (1102)
                      .|+++++-.+.+|++.-..|.+....-...-......+-.+.|..+++.. ..++.| -..+|.++
T Consensus       704 ~i~a~Avv~~~~fvald~qg~lt~h~k~g~p~~l~~~gl~G~ik~l~lD~-~~nL~A-lt~~G~Lf  767 (1774)
T PF11725_consen  704 VITAFAVVNDNKFVALDDQGDLTAHQKPGRPVPLSRPGLSGEIKDLALDE-KQNLYA-LTSTGELF  767 (1774)
T ss_pred             cceeEEEEcCCceEEeccCCccccccCCCCCccCCCCCCCcchhheeecc-ccceeE-ecCCCcee

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=88.68  E-value=28  Score=39.15  Aligned_cols=203  Identities=13%  Similarity=0.063  Sum_probs=105.2

Q ss_pred             EEEEEeCCCcEEEEEeecceeeeeeccc--cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCC
Q 001311          862 IIAIGMDDSSIQIYNVRVDEVKSKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPT  939 (1102)
Q Consensus       862 ~lasg~~dg~v~vwd~~~~~~~~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  939 (1102)
                      .+.++..+|.|.-.|..+++.+.....-  ...+.+-.+..+|+ +..++.++.+..+|..+++..-......   .   
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~---  142 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S---  142 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C---
Confidence            3444577887777777777654322211  12233333333666 6677888888888887666533222211   0   


Q ss_pred             CCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeC--CCeEEEEEcCCce
Q 001311          940 AQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFL--DATVCVFSAANLK 1016 (1102)
Q Consensus       940 ~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~--Dg~I~vwd~~~~~ 1016 (1102)
                       ..+.....-.++..++...++.+...+..+|+..-...... -...+..--...++. ++.+..  ++.+.-.|..+|.
T Consensus       143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~  220 (370)
T COG1520         143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGT  220 (370)
T ss_pred             -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCc
Confidence             01222233334444444456777777777777654432211 011111111122333 444444  6677778888888


Q ss_pred             eEEEeCCCcccCCCCC--CCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccccCCC
Q 001311         1017 LRCRINPSAYLPAGVS--SSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVPPP 1077 (1102)
Q Consensus      1017 ~~~~~~~~~~~~~gh~--~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~~~ 1077 (1102)
                      ..-.............  ...+..-.+ ..   +..+..++.++.+.-.+..+++..|+.+.+
T Consensus       221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v-~v---~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         221 LKWSQKVSQTIGRTAISTTPAVDGGPV-YV---DGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             EeeeeeeecccCcccccccccccCceE-EE---CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            8766432111111100  000110011 11   233467788888999999999999999886

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.65  E-value=13  Score=40.71  Aligned_cols=159  Identities=10%  Similarity=0.008  Sum_probs=86.8

Q ss_pred             eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCce
Q 001311          894 TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  972 (1102)
Q Consensus       894 ~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~  972 (1102)
                      +.+-|...++.|+. ...|.+.=|.+++....-.......     ..++|.++.||+|.+.||+ -.+..|.+++....+
T Consensus        26 ngvFfDDaNkqlfa-vrSggatgvvvkgpndDVpiSfdm~-----d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~   99 (657)
T KOG2377|consen   26 NGVFFDDANKQLFA-VRSGGATGVVVKGPNDDVPISFDMD-----DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDN   99 (657)
T ss_pred             cceeeccCcceEEE-EecCCeeEEEEeCCCCCCCceeeec-----CCCceeEEEeccCcceEEEEecCceEEEEecCCCc
Confidence            44555443444443 3344566676665332111111111     2258999999999999999 489999999874433


Q ss_pred             Eeee--eccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCE
Q 001311          973 CVKQ--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1050 (1102)
Q Consensus       973 ~~~~--~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~ 1050 (1102)
                      ....  ..+......|...+|+.. +-+|..+.. -+-+|-+...+.-.++-  .    .| +.+|.  ..+|.++-.-.
T Consensus       100 ~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~-G~e~y~v~pekrslRlV--k----s~-~~nvn--Wy~yc~et~v~  168 (657)
T KOG2377|consen  100 SQLEYTQECKTKNANILGFCWTSS-TEIAFITDQ-GIEFYQVLPEKRSLRLV--K----SH-NLNVN--WYMYCPETAVI  168 (657)
T ss_pred             hhhHHHHHhccCcceeEEEEEecC-eeEEEEecC-CeEEEEEchhhhhhhhh--h----hc-ccCcc--EEEEccccceE
Confidence            3222  222233556999999966 556666544 46667654433222211  0    11 22254  78888843222


Q ss_pred             EEEEe-cCCcEEEEeccCCC
Q 001311         1051 FALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus      1051 l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
                      |.+.+ ..+++.=+-+.++.
T Consensus       169 LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  169 LLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             eeeccccccccccEEEeece
Confidence            33333 44555555565544

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.47  E-value=19  Score=32.75  Aligned_cols=118  Identities=9%  Similarity=0.186  Sum_probs=68.9

Q ss_pred             EEcCCCCeeEEEEecCCCcEEEEeCCCCe--------eeEEeecCCCCeEEEee---eecCCccEEEEEeCCCeEEEEEc
Q 001311          460 AFSHPNKQLCVITCGDDKTIKVWDATNGA--------KQYIFEGHEAPVYSVCP---HHKENIQFIFSTALDGKIKAWLY  528 (1102)
Q Consensus       460 ~~s~d~~~~~l~s~~~d~~i~vWd~~~~~--------~~~~~~~h~~~v~~v~~---~~~~~~~~l~s~s~dg~i~~wd~  528 (1102)
                      .|.....  .|+.+..-+.|.|++.....        .+..+. -...|++++-   .+..+.+.|+.|+. ..|..||+
T Consensus         5 kfDG~~p--cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV   80 (136)
T PF14781_consen    5 KFDGVHP--CLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV   80 (136)
T ss_pred             EeCCCce--eEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence            4433333  57777778889999876432        344444 4566887753   33344567777765 77889999


Q ss_pred             CCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001311          529 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  600 (1102)
Q Consensus       529 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  600 (1102)
                      .....++.-..+ ..+.++.+..-+                  ....-++..+.+..|.-||.+..+...+.
T Consensus        81 ~~N~d~Fyke~~-DGvn~i~~g~~~------------------~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   81 ENNSDLFYKEVP-DGVNAIVIGKLG------------------DIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ccCchhhhhhCc-cceeEEEEEecC------------------CCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            876655533332 345554442211                  11123555666677888887655555443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.44  E-value=2  Score=46.54  Aligned_cols=159  Identities=13%  Similarity=0.068  Sum_probs=99.6

Q ss_pred             CCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCcee-eee-cCCCC----Cee-EEEEecCCCcEEEEEeCCCcEEEE-E
Q 001311          805 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM-ATF-MPPPP----AAT-FLAFHPQDNNIIAIGMDDSSIQIY-N  876 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~-~~~-~~~~~----~i~-~l~~sp~d~~~lasg~~dg~v~vw-d  876 (1102)
                      ....+..+-..|||+.+..-+..++.++++.+.... +.+ ....+    .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            456678889999999999888888999988764432 111 11111    132 222233 67778889999998887 4


Q ss_pred             eecce-----eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC
Q 001311          877 VRVDE-----VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  951 (1102)
Q Consensus       877 ~~~~~-----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  951 (1102)
                      +..+.     .++.++-...+|..+.--.+.+-+++-+..|++.++.-...+..    +.....     ..+..+++||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l----L~~~~~-----~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL----LFERAY-----QAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce----ehhhhh-----cCcceeeeCcc
Confidence            44321     12222222233443333334567888888999988865443221    111111     25678999999


Q ss_pred             CcEEEEEeCCeEEEEEcCCceE
Q 001311          952 QIHFLVVHETQLAIFETTKLEC  973 (1102)
Q Consensus       952 g~~l~~~~d~~i~iwd~~~~~~  973 (1102)
                      +.++++-..|.++++.+++...
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr~P  390 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENRNP  390 (733)
T ss_pred             cchheeecCCceEEEEecCCCC
Confidence            9999998889999998876544

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=88.29  E-value=0.25  Score=32.85  Aligned_cols=22  Identities=18%  Similarity=0.173  Sum_probs=19.5

Q ss_pred             cchhHHhHHHHHHHHhhhcCCC
Q 001311            2 RKSSKKLFTSKHFLLEQESGFF   23 (1102)
Q Consensus         2 ~~~~~~g~~~s~~~l~~Esg~~   23 (1102)
                      +-|.++||..|+++|++|+|+.
T Consensus        12 ~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667       12 EYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHcCHHHHHHHHHHHhCCC
Confidence            4478899999999999999975

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.81  E-value=3.2  Score=42.31  Aligned_cols=75  Identities=15%  Similarity=0.132  Sum_probs=52.5

Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccC-------CCCCCeEEEEEccCCCeEE
Q 001311          352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-------DPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~la  424 (1102)
                      +.+..++.+ |.+-+.+|.+++||+.+++.+... ..          . ..++.       .....|..+.++.+|.-|+
T Consensus        16 ~~l~~~~~~-Ll~iT~~G~l~vWnl~~~k~~~~~-~S----------i-~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV   82 (219)
T PF07569_consen   16 SFLECNGSY-LLAITSSGLLYVWNLKKGKAVLPP-VS----------I-APLLNSSPVSDKSSSPNITSCSLTSNGVPIV   82 (219)
T ss_pred             EEEEeCCCE-EEEEeCCCeEEEEECCCCeeccCC-cc----------H-HHHhcccccccCCCCCcEEEEEEcCCCCEEE
Confidence            335667887 667788899999999998877631 11          0 11222       4667899999998888877


Q ss_pred             EEECCCeEEEEEccCC
Q 001311          425 VAYSRHIVQIYSYHGG  440 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~  440 (1102)
                      +-+ +|..+.|+.+-+
T Consensus        83 ~ls-ng~~y~y~~~L~   97 (219)
T PF07569_consen   83 TLS-NGDSYSYSPDLG   97 (219)
T ss_pred             EEe-CCCEEEeccccc
Confidence            665 477888887654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.23  E-value=18  Score=40.50  Aligned_cols=94  Identities=10%  Similarity=0.092  Sum_probs=63.9

Q ss_pred             ecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC---CEEEEEeCC
Q 001311          507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK---NRFLAAGDD  583 (1102)
Q Consensus       507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~d  583 (1102)
                      .++.|..++-.+.+|.+.++-.+.-+....+......|.|-.++-+. +++.....-.+.-++|+|+.   ..|+.-+.|
T Consensus       111 ~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~-~~ftss~~ltl~Qa~WHP~S~~D~hL~iL~sd  189 (741)
T KOG4460|consen  111 LSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE-RFFTSSTSLTLKQAAWHPSSILDPHLVLLTSD  189 (741)
T ss_pred             ecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc-eeeccCCceeeeeccccCCccCCceEEEEecC
Confidence            35667788888888988776544334444444444445555554444 56665555567778999975   678888899


Q ss_pred             CeEEEEECCCcceEEEEc
Q 001311          584 FSIKFWDMDSVQLLTSID  601 (1102)
Q Consensus       584 g~i~iwd~~~~~~~~~~~  601 (1102)
                      +.||+||+.....+....
T Consensus       190 nviRiy~lS~~telylqp  207 (741)
T KOG4460|consen  190 NVIRIYSLSEPTELYLQP  207 (741)
T ss_pred             cEEEEEecCCcchhhccC
Confidence            999999998877665443

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=87.20  E-value=5.9  Score=43.10  Aligned_cols=171  Identities=11%  Similarity=0.065  Sum_probs=94.0

Q ss_pred             eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee-eee-cccc----ccce-eEEEecCCCEEEEEcCC
Q 001311          839 TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK-SKL-KGHS----KRIT-GLAFSHALNVLVSSGAD  911 (1102)
Q Consensus       839 ~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~-~~l-~~h~----~~V~-~l~~s~d~~~l~s~s~D  911 (1102)
                      .+..+......+..+-..| |++.|..-+. .++.|+++.+.... +++ ....    ..|+ ++..-..|.-|..++.|
T Consensus       212 ~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~d  289 (733)
T COG4590         212 IIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHED  289 (733)
T ss_pred             hhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCC
Confidence            3444555667788899999 8988877654 68899988764321 122 1111    1233 22223456778888999


Q ss_pred             CcEEEE-EcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEE
Q 001311          912 SQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHA  989 (1102)
Q Consensus       912 g~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l  989 (1102)
                      |.|.-| |+..+.......+..+   .-.+.++..+.-..+.+-++. ..+|++.++.....+.+..-.   --..+.-+
T Consensus       290 G~vsQWFdvr~~~~p~l~h~R~f---~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~---~~~~~~~~  363 (733)
T COG4590         290 GLVSQWFDVRRDGQPHLNHIRNF---KLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER---AYQAPQLV  363 (733)
T ss_pred             CceeeeeeeecCCCCcceeeecc---ccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh---hhcCccee
Confidence            998877 4443222111111111   111112222221122233333 356677766654443322211   13367788


Q ss_pred             EEcCCCcEEEEEeCCCeEEEEEcCCceeE
Q 001311          990 TFSCDSQLVYACFLDATVCVFSAANLKLR 1018 (1102)
Q Consensus       990 ~~spd~~~l~s~s~Dg~I~vwd~~~~~~~ 1018 (1102)
                      ++||.+.+|++- +.|.|+++.+++....
T Consensus       364 ~~Sp~~~~Ll~e-~~gki~~~~l~Nr~Pe  391 (733)
T COG4590         364 AMSPNQAYLLSE-DQGKIRLAQLENRNPE  391 (733)
T ss_pred             eeCcccchheee-cCCceEEEEecCCCCC
Confidence            999999999865 4678999988776443

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.20  E-value=32  Score=37.83  Aligned_cols=173  Identities=17%  Similarity=0.202  Sum_probs=93.7

Q ss_pred             cccceEEEEEccCCceEEEeecCce------EEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeE
Q 001311          738 RATKISRLIFTNSGNAILALASNAI------HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  811 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~------i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~  811 (1102)
                      .-+.+..+.+.+++..+++.+.+|.      +..+++..... ..........+.+-+.. |....    .  ......+
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~-G~~~~----~--~~~D~Eg   89 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQG-GIGGVTILDMIPLRDPD-GQPFP----K--NGLDPEG   89 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCC-CccceEeccceeccCCC-CCcCC----c--CCCChhH
Confidence            3466788999976667888888777      55444433111 00011001111111111 11110    0  1225667


Q ss_pred             EEEecCCCeEEEEe-C------CeEEEEEcCCCceeeeec---------------CCCCCeeEEEEecCCCcEEEEEeCC
Q 001311          812 FALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFM---------------PPPPAATFLAFHPQDNNIIAIGMDD  869 (1102)
Q Consensus       812 l~~s~d~~~las~s-d------g~I~iwd~~~~~~~~~~~---------------~~~~~i~~l~~sp~d~~~lasg~~d  869 (1102)
                      |++.++|.++++.. +      ..|+.++.. ++....+.               .......+++++| |++.|.++.+.
T Consensus        90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~~~~E~  167 (326)
T PF13449_consen   90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLFAAMES  167 (326)
T ss_pred             eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEEEEECc
Confidence            88888888888776 6      678888876 55544431               1234588999999 88866555432


Q ss_pred             -----C--c-------EEEEEe--ec-cee----eeeecc-----ccccceeEEEecCCCEEEEE-----cCCCcEEEEE
Q 001311          870 -----S--S-------IQIYNV--RV-DEV----KSKLKG-----HSKRITGLAFSHALNVLVSS-----GADSQLCVWS  918 (1102)
Q Consensus       870 -----g--~-------v~vwd~--~~-~~~----~~~l~~-----h~~~V~~l~~s~d~~~l~s~-----s~Dg~i~vwd  918 (1102)
                           +  .       ++++..  .+ ++.    ...+..     ....|+.+.+-+++++|+.=     +....++|+.
T Consensus       168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~  247 (326)
T PF13449_consen  168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYR  247 (326)
T ss_pred             cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEE
Confidence                 2  1       455544  33 222    222332     35678889999999877632     1233455554


Q ss_pred             cC
Q 001311          919 SD  920 (1102)
Q Consensus       919 ~~  920 (1102)
                      +.
T Consensus       248 v~  249 (326)
T PF13449_consen  248 VD  249 (326)
T ss_pred             EE
Confidence            44

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=87.01  E-value=97  Score=39.22  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=16.9

Q ss_pred             cccceEEEEEccCCceEEEeecC
Q 001311          738 RATKISRLIFTNSGNAILALASN  760 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~d  760 (1102)
                      +-..+.+++++|||...++-..+
T Consensus       660 ~lnsp~alaVsPdg~v~IAD~gN  682 (1899)
T KOG4659|consen  660 KLNSPYALAVSPDGDVIIADSGN  682 (1899)
T ss_pred             ccCCcceEEECCCCcEEEecCCc
Confidence            56678899999999866654433

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.35  E-value=8.6  Score=48.08  Aligned_cols=147  Identities=14%  Similarity=0.196  Sum_probs=93.3

Q ss_pred             eCCCcEEEEEeecceeeeeeccccccceeEEEe--------cCCCEEEEEcCCCcEEEEEcCCCccccee--eeecCCCC
Q 001311          867 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFS--------HALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR  936 (1102)
Q Consensus       867 ~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~  936 (1102)
                      +-|..+.+|+..++.....+.+-+..|..|..-        |.=++|...+.--.|.++-+.-.+.....  ....+. -
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~-i  174 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK-I  174 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee-e
Confidence            358889999999988788888888888877643        33344444444555777655432221110  111100 0


Q ss_pred             CCCCCCCcEEEEccCCcEEEEEeCCeEE--EEEcCCc---e-Eee-------------e-ecc-CCCCCCeeEEEEcCCC
Q 001311          937 TPTAQSDTRVQFHQDQIHFLVVHETQLA--IFETTKL---E-CVK-------------Q-WVP-RESSAPITHATFSCDS  995 (1102)
Q Consensus       937 ~~~~~~v~~~~~spdg~~l~~~~d~~i~--iwd~~~~---~-~~~-------------~-~~~-~~h~~~v~~l~~spd~  995 (1102)
                      ......|.++....+|+.+.+|.||.|+  +|....+   + +-+             + +.. ..+..+|..+.+....
T Consensus       175 ~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR  254 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR  254 (1311)
T ss_pred             ecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence            0112467888888999999999888554  2222221   1 110             0 111 2567899999998888


Q ss_pred             cEEEEEeCCCeEEEEEcCC
Q 001311          996 QLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       996 ~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      ..|.+-++-|+|++||+..
T Consensus       255 ~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  255 NILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             ceeeeeccCceEEEEEccC
Confidence            8899999999999999976

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.34  E-value=11  Score=47.97  Aligned_cols=67  Identities=12%  Similarity=0.121  Sum_probs=41.6

Q ss_pred             cEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee
Q 001311          944 TRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1017 (1102)
Q Consensus       944 ~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~ 1017 (1102)
                      .+..+......+.....+.+-+|+.........+...++.       .+.++..++++..||.+..||...+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  202 LQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQL-------ESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ceeeeecCCCcceeeeeeeeeehhcccccchhhccccccc-------CccCCceEEEEEecCCEEeeecCCCce
Confidence            3333333444444444455555555444444444332222       288999999999999999999999866

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.21  E-value=3.5  Score=42.05  Aligned_cols=78  Identities=6%  Similarity=0.084  Sum_probs=54.8

Q ss_pred             EecCCCEEEEEcCCCcEEEEEcCCCccccee--eeecCCCC----CCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCc
Q 001311          898 FSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGR----TPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKL  971 (1102)
Q Consensus       898 ~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~----~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~  971 (1102)
                      +..++.+|++.+.+|.+++||+.+.+.....  +..+....    ......|..+.++.+|.-+++-.+|..+.|+.+-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4557889999999999999999987653322  11111110    02224788899999999988877888999988765


Q ss_pred             eEee
Q 001311          972 ECVK  975 (1102)
Q Consensus       972 ~~~~  975 (1102)
                      ..+.
T Consensus        98 ~W~~  101 (219)
T PF07569_consen   98 CWIR  101 (219)
T ss_pred             eeEE
Confidence            5544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=85.11  E-value=28  Score=36.93  Aligned_cols=114  Identities=9%  Similarity=0.121  Sum_probs=67.8

Q ss_pred             CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE------CCCeEEEEEccCCce
Q 001311          369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY------SRHIVQIYSYHGGDE  442 (1102)
Q Consensus       369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~------~d~~v~vwd~~~~~~  442 (1102)
                      ..|++||..+.+-..                   .-.+-.+.|+.|.|..+.++++.|.      ....+..||+++..-
T Consensus        16 ~~lC~yd~~~~qW~~-------------------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w   76 (281)
T PF12768_consen   16 PGLCLYDTDNSQWSS-------------------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW   76 (281)
T ss_pred             CEEEEEECCCCEeec-------------------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence            468999988765543                   2344567999999998888888774      355788999988653


Q ss_pred             eeeEEEeec-----cccCEEEEEEcCCCCeeEEEEec-CCC--cEEEEeCCCCeeeEE-eecCCCCeEEEee
Q 001311          443 VRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCG-DDK--TIKVWDATNGAKQYI-FEGHEAPVYSVCP  505 (1102)
Q Consensus       443 ~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~~-~d~--~i~vWd~~~~~~~~~-~~~h~~~v~~v~~  505 (1102)
                      ..    +.+     -.++|..+.+..++..-+.+.|. .++  .|..||=.+-..+.. ..+-...|..+.+
T Consensus        77 ~~----~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~  144 (281)
T PF12768_consen   77 SS----LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQV  144 (281)
T ss_pred             ee----cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEE
Confidence            22    333     24788888875433321344433 333  466676433333322 2222345555544

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=84.49  E-value=12  Score=46.74  Aligned_cols=171  Identities=13%  Similarity=0.215  Sum_probs=98.2

Q ss_pred             CCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE
Q 001311          333 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  412 (1102)
Q Consensus       333 ~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  412 (1102)
                      ..+|..+...+.|...=+.+-+-|.=.+.-+  +.|+.+.+|+.+++.....                   +.+-...|.
T Consensus        65 ~~IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl  123 (1311)
T KOG1900|consen   65 VNIPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTIL  123 (1311)
T ss_pred             ccCCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhhe
Confidence            3344555555555555555555555332233  5679999999998655442                   444444555


Q ss_pred             EEE--------EccCCCeEEEEECCCeEEEEEccCCceeee------EEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311          413 RVI--------WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  478 (1102)
Q Consensus       413 ~l~--------~spdg~~las~~~d~~v~vwd~~~~~~~~~------~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~  478 (1102)
                      .+.        |-|.=++|...+.--.|.|+-+.-.+....      ...+.-..-.|+|+....+|+   ++-+|.|| 
T Consensus       124 ~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR---IF~~G~dg-  199 (1311)
T KOG1900|consen  124 KVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR---IFFAGRDG-  199 (1311)
T ss_pred             eeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc---EEEeecCC-
Confidence            554        334445555555556676665432221111      111222245689999888887   44455566 


Q ss_pred             EEEEeCC----CC---e-ee----------------EEee-cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC
Q 001311          479 IKVWDAT----NG---A-KQ----------------YIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL  531 (1102)
Q Consensus       479 i~vWd~~----~~---~-~~----------------~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~  531 (1102)
                       .+|.+.    +|   + |-                -.+. .+..+|..+.+  +.....+++-+..|+|.+||+...
T Consensus       200 -~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~I--D~SR~IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  200 -NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITI--DNSRNILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             -CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEe--ccccceeeeeccCceEEEEEccCC
Confidence             445432    21   1 11                1122 46778888886  444578999999999999999763

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=84.30  E-value=7.4  Score=44.94  Aligned_cols=30  Identities=13%  Similarity=0.189  Sum_probs=24.9

Q ss_pred             CcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          608 ASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       608 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                      .++++.-+|.|..++.+..||.|++|+...
T Consensus        16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~   45 (1636)
T KOG3616|consen   16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIP   45 (1636)
T ss_pred             eeeeeeecCCCceEEEEecCCcEEEEeecc
Confidence            356777889999999999999999998644

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=84.15  E-value=79  Score=35.63  Aligned_cols=151  Identities=9%  Similarity=-0.027  Sum_probs=82.7

Q ss_pred             ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCce
Q 001311          893 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLE  972 (1102)
Q Consensus       893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~  972 (1102)
                      ...+..++|+.+++.+..-..++-||-...   ....+....     ...+..+.|.++|..++++..|.+.. ....++
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~---~W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~  311 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP---YWQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL  311 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCc---ceEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence            344566778777776654433334443210   011122221     13678999999999998887777543 344443


Q ss_pred             -----EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311          973 -----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus       973 -----~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
                           .........-...+.++.|.+|+..+++| .+|.+.... +.|+.-.+.......     ....+  .+.|.+  
T Consensus       312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~-----~~~ly--~v~f~~--  380 (398)
T PLN00033        312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNI-----AANLY--SVKFFD--  380 (398)
T ss_pred             cccccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCC-----Cccee--EEEEcC--
Confidence                 11221111112458999999888766655 688777654 555443332211111     12255  788876  


Q ss_pred             CCEEEEEecCCcEEEE
Q 001311         1048 PNEFALGLSDGGVHVF 1063 (1102)
Q Consensus      1048 ~~~l~s~~~Dg~v~vW 1063 (1102)
                      .+.....+.+|.|.-|
T Consensus       381 ~~~g~~~G~~G~il~~  396 (398)
T PLN00033        381 DKKGFVLGNDGVLLRY  396 (398)
T ss_pred             CCceEEEeCCcEEEEe
Confidence            2455555678887655

>PRK13615 lipoprotein LpqB; Provisional

Probab=83.86  E-value=98  Score=36.49  Aligned_cols=153  Identities=9%  Similarity=-0.027  Sum_probs=88.1

Q ss_pred             eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC-Cccccee
Q 001311          850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNR  928 (1102)
Q Consensus       850 i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~  928 (1102)
                      ..+++.++ ++..+|....++.++++... +.....+.  ...++.-.|.++| ++-+...+...++..... ++... .
T Consensus       336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~--~~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~-v  409 (557)
T PRK13615        336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDT--RPGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP-V  409 (557)
T ss_pred             cccceEcC-CCceEEEEcCCceEEEecCC-Ccceeecc--CCccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE-e
Confidence            37889999 88888888778888887655 22222222  2245666777776 555554433445444332 22211 1


Q ss_pred             eeecCCCCCCCCCCCcEEEEccCCcEEEEEe----CCeEEEEEc--CCc--eEe-ee-eccCCCCCCeeEEEEcCCCcEE
Q 001311          929 FLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH----ETQLAIFET--TKL--ECV-KQ-WVPRESSAPITHATFSCDSQLV  998 (1102)
Q Consensus       929 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~----d~~i~iwd~--~~~--~~~-~~-~~~~~h~~~v~~l~~spd~~~l  998 (1102)
                      .....     ....|..+..|+||..++.-.    .++|.+--+  ..+  ..+ .. .........+.++.|..++++.
T Consensus       410 ~v~~~-----~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~la  484 (557)
T PRK13615        410 AVSWT-----ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVA  484 (557)
T ss_pred             ecccc-----CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEE
Confidence            11111     124799999999999998842    256665433  223  122 11 1111124489999999999986


Q ss_pred             EEEe---CCCeEEEEEcC
Q 001311          999 YACF---LDATVCVFSAA 1013 (1102)
Q Consensus       999 ~s~s---~Dg~I~vwd~~ 1013 (1102)
                      +.+.   .+..+++..+.
T Consensus       485 Vl~~~~~~~~~v~~v~v~  502 (557)
T PRK13615        485 TLTLAPDGERQVELHQVG  502 (557)
T ss_pred             EEeccCCCCceEEEEECC
Confidence            6652   33456666655

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.36  E-value=5  Score=39.28  Aligned_cols=31  Identities=29%  Similarity=0.474  Sum_probs=25.4

Q ss_pred             CCeEEEEEccC------CCeEEEEECCCeEEEEEccC
Q 001311          409 VSVNRVIWSPD------GSLFGVAYSRHIVQIYSYHG  439 (1102)
Q Consensus       409 ~~V~~l~~spd------g~~las~~~d~~v~vwd~~~  439 (1102)
                      ..|.+++|||-      +-+||+.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            38999999994      34788889999999998664

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=83.00  E-value=37  Score=30.99  Aligned_cols=114  Identities=9%  Similarity=0.041  Sum_probs=69.3

Q ss_pred             EEecCCCEEEEEcCCCcEEEEEcCCCccc------ceeeeecCCCCCCCCCCCcEEEEcc-----CCcEEEEEeCCeEEE
Q 001311          897 AFSHALNVLVSSGADSQLCVWSSDGWEKQ------KNRFLQIPTGRTPTAQSDTRVQFHQ-----DQIHFLVVHETQLAI  965 (1102)
Q Consensus       897 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~v~~~~~sp-----dg~~l~~~~d~~i~i  965 (1102)
                      .|......|+.++.-++|.|.+.......      ....+.+-+       .|++++-.+     +...|+.+....+..
T Consensus         5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~-------~italaaG~l~~~~~~D~LliGt~t~lla   77 (136)
T PF14781_consen    5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ-------EITALAAGRLKPDDGRDCLLIGTQTSLLA   77 (136)
T ss_pred             EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC-------ceEEEEEEecCCCCCcCEEEEeccceEEE
Confidence            34444567888888888888876543211      112233222       455554333     456777799999999


Q ss_pred             EEcCCceEeeeeccCCCCCCeeEEEEc---CCCcEEEEEeCCCeEEEEEcCCceeEEE
Q 001311          966 FETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDATVCVFSAANLKLRCR 1020 (1102)
Q Consensus       966 wd~~~~~~~~~~~~~~h~~~v~~l~~s---pd~~~l~s~s~Dg~I~vwd~~~~~~~~~ 1020 (1102)
                      ||+.....+....   -.+.|.++.+-   ....-|+..+.+..|.-||.+..+..-+
T Consensus        78 YDV~~N~d~Fyke---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWt  132 (136)
T PF14781_consen   78 YDVENNSDLFYKE---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWT  132 (136)
T ss_pred             EEcccCchhhhhh---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEE
Confidence            9998766543322   24567777663   2223355555688888888777666543

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=82.95  E-value=82  Score=34.91  Aligned_cols=202  Identities=17%  Similarity=0.286  Sum_probs=106.7

Q ss_pred             cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEE----cCCCCeeEEEEec-C-C--CcEEEEeCC--CC
Q 001311          418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF----SHPNKQLCVITCG-D-D--KTIKVWDAT--NG  487 (1102)
Q Consensus       418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~----s~d~~~~~l~s~~-~-d--~~i~vWd~~--~~  487 (1102)
                      |...+++....++-+.+||++... +..   +.  .+.++.+..    .-.|+..-|+.++ . +  .+|++|.+.  ++
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~-lq~---~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g  139 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKE-LQS---LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG  139 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-E-EEE---E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCEEEEcCCCcE-EEe---ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC
Confidence            456677778888899999998754 322   21  233333332    2245442243443 2 2  469999765  34


Q ss_pred             eeeEEeec-------CCCCeEEEeeeecC-Cc-cEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceee
Q 001311          488 AKQYIFEG-------HEAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       488 ~~~~~~~~-------h~~~v~~v~~~~~~-~~-~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      . +..+..       -...+..+|+..++ +| -+++....+|.+..|.+.... .....    ..|..+..        
T Consensus       140 ~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~----~lVR~f~~--------  206 (381)
T PF02333_consen  140 E-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA----TLVREFKV--------  206 (381)
T ss_dssp             E-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE----EEEEEEE---------
T ss_pred             c-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEee----EEEEEecC--------
Confidence            3 333321       12347788875443 33 467778889999999875321 11100    01222221        


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc-----ceEEEEcCCCCCCCcCeEEEc--CCC-CEEEE-EECCC
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-----QLLTSIDADGGLPASPRIRFN--KDG-CLLAV-STNDN  628 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~~v~~~~~s--~~~-~~l~~-~~~dg  628 (1102)
                          ...+-.+.++....+|+.+-++.-|.-|+.+..     +.+....+..-...+-.+++-  .++ .||++ .-.++
T Consensus       207 ----~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~  282 (381)
T PF02333_consen  207 ----GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN  282 (381)
T ss_dssp             ----SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred             ----CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence                124555667777778999999988888887622     223233333333456667764  333 24444 44577


Q ss_pred             cEEEEEccCCccce
Q 001311          629 GIKILATSDGIRLL  642 (1102)
Q Consensus       629 ~i~iwd~~~~~~~~  642 (1102)
                      +..+|+.......+
T Consensus       283 sf~Vy~r~~~~~~~  296 (381)
T PF02333_consen  283 SFAVYDREGPNAYV  296 (381)
T ss_dssp             EEEEEESSTT--EE
T ss_pred             eEEEEecCCCCccc
Confidence            89999987643333

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=82.21  E-value=1e+02  Score=35.46  Aligned_cols=71  Identities=10%  Similarity=0.170  Sum_probs=46.0

Q ss_pred             CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311          408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  486 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~  486 (1102)
                      ...|.++.+...|. |-+|+.|| +..||..+++.+..  .......+|..+.-+-.|.   +..|..+| |++.+.+.
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql--~s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G  234 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQL--ASPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG  234 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEc--CCCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence            35788888888884 45577777 66778777765542  1112236777777777777   66666554 66766544

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=81.99  E-value=81  Score=34.16  Aligned_cols=210  Identities=9%  Similarity=-0.033  Sum_probs=101.3

Q ss_pred             CCCCeeEEEEecCCCeEEEEeCCe--EEEEEcCCCcee---------------eeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311          805 PEEAVPCFALSKNDSYVMSASGGK--ISLFNMMTFKTM---------------ATFMPPPPAATFLAFHPQDNNIIAIGM  867 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~sdg~--I~iwd~~~~~~~---------------~~~~~~~~~i~~l~~sp~d~~~lasg~  867 (1102)
                      +...|+++.+.+..+.|++-+|+.  ++.+++......               ...-++.......+........++.+.
T Consensus        41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A  120 (302)
T smart00036       41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA  120 (302)
T ss_pred             CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence            567899999999999888888766  999998533210               112234443444444431222333444


Q ss_pred             CCCcEEEEEeecc----eeeeee---c-cccccceeEEEecC--CCEEEEEcCCCcEEEEEcCC--CcccceeeeecCCC
Q 001311          868 DDSSIQIYNVRVD----EVKSKL---K-GHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDG--WEKQKNRFLQIPTG  935 (1102)
Q Consensus       868 ~dg~v~vwd~~~~----~~~~~l---~-~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~--~~~~~~~~~~~~~~  935 (1102)
                      ...+|.++.....    ...+.+   . .-..++..+..+++  ...|..|+..+...++++..  ..............
T Consensus       121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~  200 (302)
T smart00036      121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEE  200 (302)
T ss_pred             cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccc
Confidence            4566776644321    111110   0 01123333333333  45666666542345555533  11101000000000


Q ss_pred             CCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311          936 RTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       936 ~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      .   .....++..-+++.+|.+ .|....+-|....+..+.... .-...+.++++.  ..+|+.-. +..|.|+++.++
T Consensus       201 ~---~~~p~~i~~l~~~e~Llc-~~~~~v~Vn~~G~~~~r~~~l-~w~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~  272 (302)
T smart00036      201 T---SLKPISVVQVPRDEFLLC-YDEFGVFVNLYGKRRSRNPIL-HWEFMPESFAYH--SPYLLAFH-DNGIEIRSIKTG  272 (302)
T ss_pred             c---ccCceEEEEECCCeEEEE-ECcEEEEEeCCCCccccceEE-EcCCcccEEEEE--CCEEEEEc-CCcEEEEECCCC
Confidence            0   001233333444554444 444444445443122111100 013456677776  35666554 556999999999


Q ss_pred             eeEEEeC
Q 001311         1016 KLRCRIN 1022 (1102)
Q Consensus      1016 ~~~~~~~ 1022 (1102)
                      ++++.+.
T Consensus       273 ~l~q~i~  279 (302)
T smart00036      273 ELLQELA  279 (302)
T ss_pred             ceEEEEe
Confidence            9988776

Unpublished observations.

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=81.86  E-value=32  Score=39.24  Aligned_cols=110  Identities=11%  Similarity=0.081  Sum_probs=60.0

Q ss_pred             ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC-CCCCCCcEEEEccCC------cEEEEE--e--
Q 001311          891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQDQ------IHFLVV--H--  959 (1102)
Q Consensus       891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~spdg------~~l~~~--~--  959 (1102)
                      ..-+.|+|.|||++|++--..|.|++++-.++....  ...+..-.. ........++|+|+-      .+|.++  .  
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~--~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~  107 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKV--VFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN  107 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceee--eecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence            456889999999888876556999999865543211  111110000 013567899999885      234432  1  


Q ss_pred             -------CCeEEEEEcCCc-------eEe-eeecc-CCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311          960 -------ETQLAIFETTKL-------ECV-KQWVP-RESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus       960 -------d~~i~iwd~~~~-------~~~-~~~~~-~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
                             ...|.-|.+...       +.+ ..+.. ..|  .-..|+|.|||.++++.++.
T Consensus       108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H--~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDH--NGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCc--CCceEEECCCCcEEEEECCC
Confidence                   223444544321       111 11110 112  23467799999877766544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.25  E-value=98  Score=38.33  Aligned_cols=249  Identities=12%  Similarity=0.052  Sum_probs=113.4

Q ss_pred             EEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEE
Q 001311          745 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSA  824 (1102)
Q Consensus       745 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~  824 (1102)
                      .++..-|+.+.+|+.+|.+.+|.+........... .         .....    +...-+..+|..+...+.-.++.+-
T Consensus        20 ~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~---------~~~~~----~~~~~~kk~i~~l~~~~~~~~ll~l   85 (877)
T KOG2063|consen   20 LCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-V---------TETVK----FEKEFSKKPINKLLVCASLELLLIL   85 (877)
T ss_pred             hHHHHhCCEEEEEcCCCcEEEEeccccccccchhh-h---------cchhH----HhhhhccchhHHHhhcchhcchhee
Confidence            34455677899999999999998754322111000 0         00000    0001135667777777777778888


Q ss_pred             eCCeEEEEEcCCCceeeeecCCCCCeeEEEEe--cCC-C--cEEEEEe-CCC-cEEEEEeecceeeeeeccccccceeEE
Q 001311          825 SGGKISLFNMMTFKTMATFMPPPPAATFLAFH--PQD-N--NIIAIGM-DDS-SIQIYNVRVDEVKSKLKGHSKRITGLA  897 (1102)
Q Consensus       825 sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s--p~d-~--~~lasg~-~dg-~v~vwd~~~~~~~~~l~~h~~~V~~l~  897 (1102)
                      +|+.|.++++.+.+.... ..+-..+...++.  +.. +  .+.+... ... ....|+-+.+..+..--+-.....+++
T Consensus        86 ~dsqi~~~~l~~~~~~~~-~~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  164 (877)
T KOG2063|consen   86 SDSQIAVHKLPELEPVPS-GTRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARA  164 (877)
T ss_pred             cCCcceeeecCccccccc-ccccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhc
Confidence            899999998876655211 1111111111110  001 1  1222222 111 122233222222211111122223333


Q ss_pred             EecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEee-e
Q 001311          898 FSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK-Q  976 (1102)
Q Consensus       898 ~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~-~  976 (1102)
                      |  .+..+.++-.+....+|.-.++......+......     ..--.+.--+++..++.+.|+...+-|.......+ .
T Consensus       165 ~--~~~~~c~~~~~~~~ii~~~~~~~~~~~~~s~~~~~-----s~~P~I~~l~~~~~ll~~kd~~gv~vd~~G~~~~~~~  237 (877)
T KOG2063|consen  165 W--CGHIVCLGLKKSYYIINNTSKGVGPNLFPSSMDNE-----SRKPLIKSLSDQSELLLGKDNIGVVVDLNGIIAQRGT  237 (877)
T ss_pred             c--cceeEEEeecceeEEEecCCCccccceeeeccccc-----cCCCeEEEecCCceEEEccCceEEEEecCCcccCCCc
Confidence            3  34444444443344444444432211111111100     11234455556666777777766666644322111 0


Q ss_pred             eccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311          977 WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       977 ~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
                      +..   .....++.+  +.-|+++- .++.|.||+..++.+++++
T Consensus       238 l~w---s~~P~~v~~--~~PYlIa~-~~~~veI~s~~~~qlvQSI  276 (877)
T KOG2063|consen  238 LVW---SEVPLSVVV--ESPYLIAL-LDRSVEIRSKLDGQLVQSI  276 (877)
T ss_pred             eEe---cccchhhcc--cCceEEEE-ccccEEEEeccCHHHhhcc
Confidence            000   112222222  44555554 4669999999999888777

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.98  E-value=48  Score=42.31  Aligned_cols=36  Identities=33%  Similarity=0.563  Sum_probs=29.3

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERL  382 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~  382 (1102)
                      ......++|+|... ++|.|+..|.|.++-...-+..
T Consensus        35 ~~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve~~   70 (993)
T KOG1983|consen   35 PSTPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVEFV   70 (993)
T ss_pred             CCCCcceeeccccc-eEEEEEecccEEEecccceEEE
Confidence            35678899999998 6999999999999987654443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=80.77  E-value=41  Score=38.66  Aligned_cols=30  Identities=17%  Similarity=0.294  Sum_probs=25.4

Q ss_pred             CeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311          985 PITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       985 ~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      .|.+++..+..+.|++.+.+|.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            499999999899999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>PRK13614 lipoprotein LpqB; Provisional

Probab=80.70  E-value=1.3e+02  Score=35.68  Aligned_cols=161  Identities=11%  Similarity=0.125  Sum_probs=87.3

Q ss_pred             CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee-eeccccccceeEEEecCCCEEEEEcCCC--cEEEEEcCC-Ccc
Q 001311          849 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDG-WEK  924 (1102)
Q Consensus       849 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~-~~~  924 (1102)
                      .+.+++.++ ++..+|....|+. .+|-...+.... .+.+  ..++.-.|.++| ++-+...+.  .|....-.. ++.
T Consensus       344 ~~~s~avS~-~g~~~A~~~~~~~-~l~~~~~g~~~~~~~~g--~~Lt~PS~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~  418 (573)
T PRK13614        344 GPASPAESP-VSQTVAFLNGSRT-TLYTVSPGQPARALTSG--STLTRPSFSPQD-WVWTAGPGGNGRIVAYRPTGVAEG  418 (573)
T ss_pred             cccceeecC-CCceEEEecCCCc-EEEEecCCCcceeeecC--CCccCCcccCCC-CEEEeeCCCCceEEEEecCCCccc
Confidence            678899999 8888888777662 333322233222 2333  246667787777 555554433  444443321 111


Q ss_pred             cceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCe--EEEEEc---CCceEeeee--ccCCCCCCeeEEEEcCCC
Q 001311          925 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQ--LAIFET---TKLECVKQW--VPRESSAPITHATFSCDS  995 (1102)
Q Consensus       925 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~--i~iwd~---~~~~~~~~~--~~~~h~~~v~~l~~spd~  995 (1102)
                      .......... .......|..+..|+||..++.-  .++.  |.|--+   ..|.....-  ..-++...+.++.|..++
T Consensus       419 ~~~~~~~v~~-~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~  497 (573)
T PRK13614        419 AQAPTVTLTA-DWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDS  497 (573)
T ss_pred             ccccceeecc-cccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCC
Confidence            0000000000 01111259999999999999883  4665  665433   344322211  111234688999999999


Q ss_pred             cEEEEEe---CCCeEEEEEcCCc
Q 001311          996 QLVYACF---LDATVCVFSAANL 1015 (1102)
Q Consensus       996 ~~l~s~s---~Dg~I~vwd~~~~ 1015 (1102)
                      .+++.+.   .+-.+++..+..|
T Consensus       498 sl~V~~~~~~~~~~~~~v~v~~g  520 (573)
T PRK13614        498 TVVVTKASATSNVVPELLSVDAG  520 (573)
T ss_pred             EEEEEeccCCCcceEEEEEeCCC
Confidence            9877654   2344666666444

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=80.43  E-value=47  Score=38.73  Aligned_cols=128  Identities=9%  Similarity=-0.009  Sum_probs=71.5

Q ss_pred             EEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCC-CCeeEEEEcCCCcEEEEEe--------------CCCeEEEE
Q 001311          946 VQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESS-APITHATFSCDSQLVYACF--------------LDATVCVF 1010 (1102)
Q Consensus       946 ~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~-~~v~~l~~spd~~~l~s~s--------------~Dg~I~vw 1010 (1102)
                      +.+-++|.+++... ..++.+|+. |+.+..+...+.. .-=..+..-|+|.+|+.+.              .| .|..+
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D-~Ivev  229 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKDVDTVED-VIVEV  229 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S--EEEEE
T ss_pred             eeEcCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCCccEecC-EEEEE
Confidence            56678888887654 788888885 5555555433211 1125677889999998887              23 36667


Q ss_pred             EcCCceeEEEeCCCcccCCC-----------------CCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCcccc
Q 001311         1011 SAANLKLRCRINPSAYLPAG-----------------VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus      1011 d~~~~~~~~~~~~~~~~~~g-----------------h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~ 1073 (1102)
                      | .+|+.+..+....++...                 ....+...=++.+.+.++.+++++-.-..|...|..+++-.|.
T Consensus       230 d-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wi  308 (477)
T PF05935_consen  230 D-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWI  308 (477)
T ss_dssp             --TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEE
T ss_pred             C-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEE
Confidence            7 899988887755544111                 1111222338889887667777766667899999888887777


Q ss_pred             cCCC
Q 001311         1074 VPPP 1077 (1102)
Q Consensus      1074 ~~~~ 1077 (1102)
                      +-.+
T Consensus       309 lg~~  312 (477)
T PF05935_consen  309 LGPP  312 (477)
T ss_dssp             ES-S
T ss_pred             eCCC
Confidence            7655

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=80.32  E-value=8.3  Score=45.02  Aligned_cols=14  Identities=14%  Similarity=0.150  Sum_probs=7.4

Q ss_pred             HHHHHHHHHhhccc
Q 001311          128 RSIMLVELKKLIEA  141 (1102)
Q Consensus       128 R~~l~~~l~~~i~~  141 (1102)
                      |.+-...|++.|+.
T Consensus       421 rpqYykLIEecISq  434 (1102)
T KOG1924|consen  421 RPQYYKLIEECISQ  434 (1102)
T ss_pred             hHHHHHHHHHHHHH
Confidence            44455555555544

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=80.22  E-value=49  Score=37.77  Aligned_cols=63  Identities=16%  Similarity=0.115  Sum_probs=39.6

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      .-...+.|+|.|||+ +|++--..|.|++++-.++.......+            .......-.+....|+|+||-
T Consensus        28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence            446779999999998 466654469999998665532211000            000111136788999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1102
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		1e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-05
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-04
2h9l_A	329	Wdr5delta23 Length = 329		9e-10
2h9l_A	329	Wdr5delta23 Length = 329		1e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		9e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		1e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		9e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		9e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		1e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		1e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		2e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		1e-04
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		1e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-04
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-06
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-06
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-05
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		1e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-05
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		8e-05
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		9e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		1e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-04
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-04
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-04
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-04
2pm9_A	416	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		5e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		5e-04
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		6e-04
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		7e-04
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		7e-04
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		7e-04

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 156
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 157 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 199 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 252

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 98   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 157  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 204
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 205  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 238

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 158
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 159 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 201 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 254

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 100  DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 159  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 206
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 207  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 240

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 151
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 152 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 194 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 247

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 93   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 152  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 199
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 200  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 233

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 135
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 136 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 178 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 231

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 77   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 136  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 183
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 184  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 217

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 130
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 131 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 172
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 173 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 226

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 72   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 130
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 131  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 178
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 179  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 212

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 140
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 141 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 183 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 236

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 82   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 141  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 188
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 189  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 222

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 134
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 135 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 177 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 230

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 76   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 135  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 182
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 183  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 216

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 139
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 140 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 182 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 235

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 81   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 140  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 187
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 188  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 221

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 133
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 134 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 175
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 176 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 229

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 20/156 (12%)
Query: 858  QDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW 917
             D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W
Sbjct: 74   SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 133
Query: 918  SSDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKL 971
                          + TG   +T  A SD     H ++   L+V   ++    I++T   
Sbjct: 134  -------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 972  ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            +C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 181  QCLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 215

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 108/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G+   T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GKCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLID-DDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNDLKLWDYSKG-KCLKTY 233

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004
            C+K  +  + + P++   FS + + + A  LD
Sbjct: 186  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLD 216

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/236 (23%), Positives = 107/236 (45%), Gaps = 30/236 (12%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           +V+ V +SP+G     + +  +++I+  + G   +    I  H  G++D+A+S  +  L 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIWGAYDG---KFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            ++  DDKT+K+WD ++G      +GH   V+  C +       I S + D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSNYVF--CCNFNPQSNLIVSGSFDESVRIW--- 137
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                 D +  G    T+   +D            +  V F+   +  +++  D   + W
Sbjct: 138 ------DVKT-GMCLKTLPAHSD-----------PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 590 DMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           D  S Q L ++  D   P S  ++F+ +G  +  +T DN +K+   S G + L+T+
Sbjct: 180 DTASGQCLKTLIDDDNPPVS-FVKFSPNGKYILAATLDNTLKLWDYSKG-KCLKTY 233

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 72/155 (46%), Gaps = 20/155 (12%)
Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+N++    DD +++I++V   +    LKGHS  +    F+   N++VS   D  + +W 
Sbjct: 79   DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 919  SDGWEKQKNRFLQIPTG---RTPTAQSDTRVQFHQDQIHFLVV---HETQLAIFETTKLE 972
                         + TG   +T  A SD     H ++   L+V   ++    I++T   +
Sbjct: 138  ------------DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ 185
Query: 973  CVKQWVPRESSAPITHATFSCDSQLVYACFLDATV 1007
            C+K  +  + + P++   FS + + + A  LD T+
Sbjct: 186  CLKTLI-DDDNPPVSFVKFSPNGKYILAATLDNTL 219

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 100/224 (44%), Gaps = 36/224 (16%)
Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
           SV  V +SPDG     A     V++++ +G  ++ Q L    H   VN +AF  P+ Q  
Sbjct: 223 SVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLT--GHSSSVNGVAF-RPDGQ-T 276
Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
           + +  DDKT+K+W+  NG       GH + V+ V      + Q I S + D  +K  L++
Sbjct: 277 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVA--FSPDGQTIASASDDKTVK--LWN 331
Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
             G  +                   +T  G      GV  F        +A DD ++K W
Sbjct: 332 RNGQHL-------------------QTLTGHSSSVWGVA-FSPDGQTIASASDDKTVKLW 371
Query: 590 DMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTNDNGIKI 632
           + +  QLL ++    G  +S R + F+ DG  +A +++D  +K+
Sbjct: 372 NRNG-QLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKL 411

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 334 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 393
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 394 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 453
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 573 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 602
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 334 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 393
           D+ KT +   N+      +DFHP +   +L     G + LW   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQ--VEVRSIQV---- 53
Query: 394 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 453
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 573 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 602
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/208 (20%), Positives = 81/208 (38%), Gaps = 45/208 (21%)
Query: 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKENIQFIFSTALDGKIKAWLY------DNLGSRVDY--------EAP-------GRWCT 545
             +NI++I + + D  +  W         + G   DY        E P       G   +
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 546 TMAYSADGTRTYQGFRKRSLGV---------------------VQFDTTKNRFLAAGDDF 584
               S  G     G    +L V                       +D  + R ++A  D 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDT 332
Query: 585 SIKFWDMDSVQLLTSIDADGGLPASPRI 612
           +I+ WD+++ +L+ ++     L    R+
Sbjct: 333 TIRIWDLENGELMYTLQGHTALVGLLRL 360

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506
           L++  H GGV  + ++H      +++   D+T++VWD   G   ++FEGH + V  +   
Sbjct: 156 LQLSGHDGGVWALKYAHGG---ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 507 HKENIQFIFSTALDGKIKAW 526
             +NI++I + + D  +  W
Sbjct: 213 EYKNIKYIVTGSRDNTLHVW 232

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/272 (24%), Positives = 117/272 (43%), Gaps = 52/272 (19%)
Query: 334 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 393
           D+ KT +   N+      +DFHP +   +L     G + LW      ++ +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNY--ETQVEVRSIQV---- 53
Query: 394 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 453
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 573 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 602
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 118/272 (43%), Gaps = 52/272 (19%)
Query: 334 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLG 393
           D+ KT +   N+      +DFHP +   +L     G + +W   ++  + +R+ +V    
Sbjct: 4   DIKKTFS---NRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQ--VEVRSIQV---- 53
Query: 394 ACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV 453
               P++A      G  + R  W   GS          +++++Y+ G++V   ++ +AH 
Sbjct: 54  -TETPVRA------GKFIARKNWIIVGS------DDFRIRVFNYNTGEKV---VDFEAHP 97
Query: 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
             +  IA  HP K   V++  DD T+K+W+   N A +  FEGHE  V  V  + K+   
Sbjct: 98  DYIRSIAV-HPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST 155
Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572
           F  S  LD  +K W   +LG       P    TT              ++R +  V +  
Sbjct: 156 FA-SGCLDRTVKVW---SLGQ----STPNFTLTTG-------------QERGVNYVDYYP 194
Query: 573 TKNR--FLAAGDDFSIKFWDMDSVQLLTSIDA 602
             ++   + A DD +IK WD  +   + +++ 
Sbjct: 195 LPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 29/208 (13%)
Query: 385 RNFKVWDLGA-CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV 443
           R+  VWD+ +   + L+  LV     +VN V    D      A     +++++    + V
Sbjct: 233 RSIAVWDMASPTDITLRRVLVGHRA-AVNVV--DFDDKYIVSASGDRTIKVWNTSTCEFV 289
Query: 444 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSV 503
           R    ++ H  G+  + +    +   V++   D TI++WD   GA   + EGHE  V  +
Sbjct: 290 RT---LNGHKRGIACLQY----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR 563
              +K     I S A DGKIK W   +L + +D  AP            GT   +   + 
Sbjct: 343 RFDNKR----IVSGAYDGKIKVW---DLVAALDPRAPA-----------GTLCLRTLVEH 384
Query: 564 SLGVVQFDTTKNRFLAAGDDFSIKFWDM 591
           S  V +    + + +++  D +I  WD 
Sbjct: 385 SGRVFRLQFDEFQIVSSSHDDTILIWDF 412

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 470
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 66  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 120
Query: 471 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 528
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 121 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 529 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 584
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 239
Query: 585 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 622
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 240 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 299
Query: 623 VSTNDNGIKILATSDGIR 640
               DN +++   + G R
Sbjct: 300 AGYTDNLVRVWQVTIGTR 317

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 95/258 (36%), Gaps = 34/258 (13%)
Query: 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 470
           V+ V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 89  VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQ--I 143
Query: 471 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ--FIFSTALDGKIKAWLY 528
           ++   DKTIK+W+ T G  +Y  +      +  C     N     I S   D  +K W  
Sbjct: 144 VSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 529 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF---- 584
            N   + ++     +  T+  S DG+    G +     +   +  K+ +   G D     
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINAL 262
Query: 585 ---------------SIKFWDMDS-------VQLLTSIDADGGLPASPRIRFNKDGCLLA 622
                          SIK WD++         Q + S  +    P    + ++ DG  L 
Sbjct: 263 CFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLF 322
Query: 623 VSTNDNGIKILATSDGIR 640
               DN +++   + G R
Sbjct: 323 AGYTDNLVRVWQVTIGTR 340

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 29/218 (13%)
Query: 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 508
           +  H   V  + F HP   + +++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 104 LSGHRSPVTRVIF-HPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH- 160
Query: 509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV 568
            + + + S + D  IK W +                       +  RT  G    ++  V
Sbjct: 161 -SGKLLASCSADMTIKLWDFQGF--------------------ECIRTMHG-HDHNVSSV 198
Query: 569 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN 628
                 +  ++A  D +IK W++ +   + +    G       +R N+DG L+A  +ND 
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF--TGHREWVRMVRPNQDGTLIASCSNDQ 256
Query: 629 GIK--ILATSDGIRLLRTFENLAYDASRTSENSKPTIS 664
            ++  ++AT +    LR   ++    S   E+S  +IS
Sbjct: 257 TVRVWVVATKECKAELREHRHVVECISWAPESSYSSIS 294

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIGEE 353

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 27/215 (12%)
Query: 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCV 470
           V  V+ S DG           ++++    G   R+ +    H   V  +AFS  N+Q  +
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQ--I 487
Query: 471 ITCGDDKTIKVWDATNGAKQYIFEGHEAPV-YSVCPHHKENIQ--FIFSTALDGKIKAWL 527
           ++   D+TIK+W+     K  I EG E    +  C     N     I S + D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK------------- 574
             N   R        + +T+A S DG+    G +   + +      K             
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA 607
Query: 575 -----NRF-LAAGDDFSIKFWDMDSVQLLTSIDAD 603
                NR+ L A  +  IK WD++S  ++  +  D
Sbjct: 608 LCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVD 642

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 247 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 305
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 359

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 245 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 303
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 357

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
           SLFG       + I+     +  +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 249 SLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 307
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIGEE 361

>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 33/222 (14%)
Query: 338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 397
           ++ R  N  SS  ++ F+  Q  +L  G N G+I                 +WD+  C+ 
Sbjct: 105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIF----------------IWDMNKCTE 148
Query: 398 PLQAALVKDPG---VSVNRVI---WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 450
                    PG    SV+ VI   W+     +F  A S +   I+      EV  HL   
Sbjct: 149 SPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-HLSYT 207
Query: 451 AHVGGVND---IAFSHPNKQLCVITC---GDDKTIKVWDATNGAK--QYIFEGHEAPVYS 502
           +   G+     +   HP     V T     +D +I +WD  N     Q + +GH+  + S
Sbjct: 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267
Query: 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC 544
           +   H++    + S+  D  +  W  ++      + A G WC
Sbjct: 268 LDWCHQDE-HLLLSSGRDNTVLLWNPESAEQLSQFPARGNWC 308

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 10/109 (9%)
Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC- 504
           H  +  H   V+D+A S  N     I+   DKT+++WD   G     F GH++ VYSV  
Sbjct: 69  HKALTGHNHFVSDLALSQEN--CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAF 126
Query: 505 -PHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYS 550
            P +++    I S   + +IK W  L +   S  + E    W + + YS
Sbjct: 127 SPDNRQ----ILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYS 171

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 410  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            +V  + ++ DG     +    ++Q++++  GD V     + AH   V D      ++   
Sbjct: 1012 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1064
Query: 470  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            +++   D T+KVW+   G  +  F  H+  V S C    +  +F  ST+ D   K W +D
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1122
Query: 530  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 588
             L    + +         A+S DG                        LA GDD   I+ 
Sbjct: 1123 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1160
Query: 589  WDMDSVQLLTS 599
            W++   QLL S
Sbjct: 1161 WNVSDGQLLHS 1171

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 32/191 (16%)
Query: 410  SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            +V  + ++ DG     +    ++Q++++  GD V     + AH   V D      ++   
Sbjct: 1005 AVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF----LQAHQETVKDFRLLQDSR--- 1057
Query: 470  VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            +++   D T+KVW+   G  +  F  H+  V S C    +  +F  ST+ D   K W +D
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLS-CAISSDATKF-SSTSADKTAKIWSFD 1115
Query: 530  NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-FSIKF 588
             L    + +         A+S DG                        LA GDD   I+ 
Sbjct: 1116 LLSPLHELKGHNGCVRCSAFSLDGI----------------------LLATGDDNGEIRI 1153
Query: 589  WDMDSVQLLTS 599
            W++   QLL S
Sbjct: 1154 WNVSDGQLLHS 1164

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHH 507
           +AH   ++D    +  K+L   TC  DKTIK+++      + I    GHE PV+ V   H
Sbjct: 6   NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 543
            +    + S + DGK+  W  +N          GRW
Sbjct: 64  PKFGTILASCSYDGKVLIWKEEN----------GRW 89

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 7/117 (5%)
Query: 421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIK 480
           SLFG       + I+        +    +DAH   VN ++F+ P  +  + T   DKT+ 
Sbjct: 243 SLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 301
Query: 481 VWDATN-GAKQYIFEGHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
           +WD  N   K + FE H+  ++ V   PH   N   + S+  D ++  W    +G  
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIGEE 355

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 495 GHEAPVYSV--CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSAD 552
           GH APV  +  CPH   N   I S + D  +  W   + G  +    P            
Sbjct: 79  GHTAPVLDIAWCPH---NDNVIASGSEDCTVMVWEIPDGGLVLPLREP------------ 123
Query: 553 GTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 612
              T +G  KR   V    T +N  L+AG D  I  WD+ +   + ++  D        +
Sbjct: 124 -VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSV 182
Query: 613 RFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT 662
            +++DG L+  S  D  ++++    G         +  +  R  E ++P 
Sbjct: 183 DWSRDGALICTSCRDKRVRVIEPRKG--------TVVAEKDRPHEGTRPV 224

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1102
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.98
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.81
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.81
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.75
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.69
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.67
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.67
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.66
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.64
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.6
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.57
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.56
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.55
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.54
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.53
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.52
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.52
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.52
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.5
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.49
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.49
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.4
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.36
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.36
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.34
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.32
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.3
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.29
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.27
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.25
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.23
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.22
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.21
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.19
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.17
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.17
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.17
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.16
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.15
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.15
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.15
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.09
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.09
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.07
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.07
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.06
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.05
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.05
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.95
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.89
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.88
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.88
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.81
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.8
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.79
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.73
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.72
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.71
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.69
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.68
3ott_A	758	Two-component system sensor histidine kinase; beta	98.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.63
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.61
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.6
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.6
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.59
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.56
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.55
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.53
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.51
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.51
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.42
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.39
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.36
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.35
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.3
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.26
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.25
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.24
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.22
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.22
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.16
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.12
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.11
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.09
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.08
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.06
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.0
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.0
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.99
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.96
3ott_A	758	Two-component system sensor histidine kinase; beta	97.93
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.89
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.87
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.84
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.84
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.82
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.71
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.61
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.58
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.51
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.47
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.42
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.36
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.34
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.33
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.33
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.21
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.18
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.16
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.13
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.12
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.09
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.05
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.02
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.91
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.81
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.79
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.79
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.65
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.58
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.35
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.32
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.25
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	96.25
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	96.22
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.11
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.1
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.05
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.0
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.94
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.93
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.91
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.85
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.75
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.7
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.47
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	95.42
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.42
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.23
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.17
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.01
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.73
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.62
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.6
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.11
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	92.28
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.62
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	90.9
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	90.06
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	89.9
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	89.32
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	89.19
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	88.46
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	86.13
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	83.85
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	80.59

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.8e-67  Score=635.12  Aligned_cols=566  Identities=24%  Similarity=0.366  Sum_probs=470.7

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      .++.+|++.|+||+|||||++ ||+|+.|++|+|||. +++.+.                   .+.+|.+.|++++|+||
T Consensus        10 ~~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspd   68 (577)
T 2ymu_A           10 NRLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPD   68 (577)
T ss_dssp             EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTT
T ss_pred             eEECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCC
Confidence            346679999999999999996 999999999999995 566665                   37899999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      |++||+++.|++|+|||+. ++.+.   .+.+|.+.|.+++|+||++  +|++++.|+.+++|+.. ......+.+|...
T Consensus        69 g~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~  141 (577)
T 2ymu_A           69 GQTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSS  141 (577)
T ss_dssp             SSEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSC
T ss_pred             CCEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCc
Confidence            9999999999999999975 44333   5889999999999999999  79999999999999965 4556677889999


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      |..+.++  +++..+++++.++.+++|+... ........+..                     .+..+.++|+++++++
T Consensus       142 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---------------------~v~~~~~~~~~~~l~~  197 (577)
T 2ymu_A          142 VWGVAFS--PDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSS---------------------SVWGVAFSPDGQTIAS  197 (577)
T ss_dssp             EEEEEEC--TTSSCEEEEETTSEEEEECTTS-CEEEEEECCSS---------------------CEEEEEECTTSSCEEE
T ss_pred             eeeeeee--cCCccceecccccceeccccce-eeeeeccCCCc---------------------ceeeeeecCCCCEEEE
Confidence            9988874  5567899999999999998643 22223333333                     4455556666668999


Q ss_pred             EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311          580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  659 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1102)
                      ++.|+.|++||. +++.+..+..+..  .|.+++|+|++++|++++.|+.|++|+.. + +.+..+.+|...+.      
T Consensus       198 ~~~d~~v~~w~~-~~~~~~~~~~~~~--~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~-~~~~~~~~~~~~v~------  266 (577)
T 2ymu_A          198 ASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVN------  266 (577)
T ss_dssp             EETTSEEEEECT-TSCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEECTT-S-CEEEEECCCSSCEE------
T ss_pred             EcCCCEEEEEeC-CCcEEEEEecCCC--CEEEEEECCCCCEEEEEeCCCEEEEEeCC-C-CEEEEEecCCCCEE------
Confidence            999999999996 5677777776644  79999999999999999999999999954 3 45556665554322      


Q ss_pred             CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccc
Q 001311          660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  739 (1102)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  739 (1102)
                                                         .+.+.+++..+++++.|+.+++|+...    .....+    .+|.
T Consensus       267 -----------------------------------~v~~~~d~~~l~~~~~d~~i~~w~~~~----~~~~~~----~~h~  303 (577)
T 2ymu_A          267 -----------------------------------GVAFRPDGQTIASASDDKTVKLWNRNG----QLLQTL----TGHS  303 (577)
T ss_dssp             -----------------------------------EEEECTTSSEEEEEETTSCEEEEETTS----CEEEEE----CCCS
T ss_pred             -----------------------------------EEEEcCCCCEEEEEeCCCEEEEEeCCC----cEEEEE----ecCC
Confidence                                               233556788999999999999999653    122222    3588


Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      ..|.+++|+|+++.+++++.|+.+++|++...                      .+..  +.  +|...+.+++|+|+++
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~----------------------~~~~--~~--~~~~~v~~~~~s~~g~  357 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------------------HLQT--LT--GHSSSVWGVAFSPDGQ  357 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------EEEE--EC--CCSSCEEEEEECTTSS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC----------------------eeEE--Ee--CCCCCEEEEEECCCCC
Confidence            99999999999999999999999999986321                      1111  12  3888999999999999


Q ss_pred             eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEE
Q 001311          820 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF  898 (1102)
Q Consensus       820 ~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~  898 (1102)
                      +|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|
T Consensus       358 ~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~  434 (577)
T 2ymu_A          358 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF  434 (577)
T ss_dssp             EEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred             EEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence            999999 899999995 5688889999999999999999 9999999999999999995 57788899999999999999


Q ss_pred             ecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeee
Q 001311          899 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQW  977 (1102)
Q Consensus       899 s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~  977 (1102)
                      +||+++|++++.|++|++||....      .+....+|.   ..|.+++|+|||++|+++ .|+.|++||. +++++..+
T Consensus       435 s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~---~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~  504 (577)
T 2ymu_A          435 SPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL  504 (577)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTSC------EEEEEECCS---SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred             CCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEE
Confidence            999999999999999999997542      233334444   478999999999999995 8899999995 67777777


Q ss_pred             ccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC
Q 001311          978 VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD 1057 (1102)
Q Consensus       978 ~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D 1057 (1102)
                      .  +|...|++++|+|||++|++++.||.|+|||. +++.+..+.       +|... |.  +++|+| |+++|+|++.|
T Consensus       505 ~--~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------~h~~~-v~--~~~fs~-dg~~l~s~~~D  570 (577)
T 2ymu_A          505 T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------GHSSS-VW--GVAFSP-DGQTIASASSD  570 (577)
T ss_dssp             E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------CCSSC-EE--EEEECT-TSSCEEEEETT
T ss_pred             e--CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------CCCCC-EE--EEEEcC-CCCEEEEEeCC
Confidence            6  88999999999999999999999999999996 677777766       55444 66  899999 68999999999


Q ss_pred             CcEEEEe
Q 001311         1058 GGVHVFE 1064 (1102)
Q Consensus      1058 g~v~vW~ 1064 (1102)
                      ++|++||
T Consensus       571 ~~i~~Wd  577 (577)
T 2ymu_A          571 KTVKLWN  577 (577)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2e-65  Score=621.13  Aligned_cols=577  Identities=14%  Similarity=0.134  Sum_probs=448.1

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      +.+.+.+++|+|||++ ||+++ +++|+|||+.+++...                   .+.+|...|++++|||||++||
T Consensus        17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la   75 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA   75 (611)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred             ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence            5778899999999996 77776 5799999998876655                   4789999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC----CcEEEEeCCCCeeeEEeecCCCCe
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d----~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      +|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+||++  .|++++.+    +.|++||  +++.+..+.+|...|
T Consensus        76 sg~~d~~v~lWd~~~~~~~-~~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v  150 (611)
T 1nr0_A           76 SGDVHGNVRIWDTTQTTHI-LKTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAM  150 (611)
T ss_dssp             EEETTSEEEEEESSSTTCC-EEEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCE
T ss_pred             EEeCCCCEEEeECCCCcce-eeEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCc
Confidence            9999999999999866543 2235789999999999999999  67777654    3677776  577788899999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .+++|+++.. ..|++|+.|++|++||..+.+....+..|...|.+++|+|+|                     ++|+++
T Consensus       151 ~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg---------------------~~las~  208 (611)
T 1nr0_A          151 NSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG---------------------SLFAST  208 (611)
T ss_dssp             EEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred             eEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC---------------------CEEEEE
Confidence            9999965432 369999999999999988766666666666666666655555                     579999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccccc
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  655 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  655 (1102)
                      +.|++|++||+.+++.+..+...     ++...|.+++|+|++++|++++.|++|++||+.++ +....+..+....   
T Consensus       209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~-~~~~~~~~~~~~~---  284 (611)
T 1nr0_A          209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIPVGTRIE---  284 (611)
T ss_dssp             ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEECCSSGG---
T ss_pred             ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC-ceeeeecCCCCcc---
Confidence            99999999999999988877421     34558999999999999999999999999999887 4444443221000   


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311          656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  735 (1102)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  735 (1102)
                                                           ........++..+++++.|+.+++|+.....   ....+    
T Consensus       285 -------------------------------------~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~---~~~~~----  320 (611)
T 1nr0_A          285 -------------------------------------DQQLGIIWTKQALVSISANGFINFVNPELGS---IDQVR----  320 (611)
T ss_dssp             -------------------------------------GCEEEEEECSSCEEEEETTCCEEEEETTTTE---EEEEE----
T ss_pred             -------------------------------------ceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC---cceEE----
Confidence                                                 0000111256789999999999999976532   11111    


Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                      .+|...|.+++|+|+|++|++++.|+.|++||+..                      +......  ..+|...|.+++|+
T Consensus       321 ~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~----------------------~~~~~~~--~~~h~~~v~~~~~s  376 (611)
T 1nr0_A          321 YGHNKAITALSSSADGKTLFSADAEGHINSWDIST----------------------GISNRVF--PDVHATMITGIKTT  376 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT----------------------CCEEECS--SCSCSSCEEEEEEC
T ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC----------------------Cceeeec--ccCCcceEEEEEEC
Confidence            45899999999999999999999999999998743                      2222111  12388999999999


Q ss_pred             cCCCeEEEEe-CCeEEEEEcCCCceeee---ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311          816 KNDSYVMSAS-GGKISLFNMMTFKTMAT---FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  891 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~~~~~~~---~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  891 (1102)
                      +++. +++++ |+++++|++.++.....   .........+++|+| ++.+++++ .++.+++|+  .++ +..+. |..
T Consensus       377 ~~~~-l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~  449 (611)
T 1nr0_A          377 SKGD-LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISY  449 (611)
T ss_dssp             TTSC-EEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSS
T ss_pred             CCCc-EEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-cCC
Confidence            8774 55665 99999999876543221   011234568899999 88777776 467899998  444 45554 788


Q ss_pred             cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC
Q 001311          892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK  970 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~  970 (1102)
                      .+.+++|+|||++||+++.|++|++||+.++....   ... .+|.   ..|.+++|+|||++|+++ .|+.|++|++.+
T Consensus       450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~---~~v~~v~fspdg~~las~s~d~~v~~w~~~~  522 (611)
T 1nr0_A          450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP---AEITSVAFSNNGAFLVATDQSRKVIPYSVAN  522 (611)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS---SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC---CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence            89999999999999999999999999998754311   111 2333   479999999999999995 899999999998


Q ss_pred             -ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee-E-EEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311          971 -LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL-R-CRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus       971 -~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~-~-~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
                       ++........+|...|.+++|+|||++||+|+.|++|+|||+.++.. . ..+       .+|....|.  +++|+| |
T Consensus       523 ~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~-------~~h~~~~v~--~v~fs~-d  592 (611)
T 1nr0_A          523 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK-------GAHAMSSVN--SVIWLN-E  592 (611)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET-------TSSTTSCEE--EEEEEE-T
T ss_pred             CCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh-------ccCcccCee--EEEEcC-C
Confidence             66655423335999999999999999999999999999999988753 2 222       244233366  899999 5


Q ss_pred             CCEEEEEecCCcEEEEecc
Q 001311         1048 PNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1048 ~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      +. |++++.|++|++|++.
T Consensus       593 ~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          593 TT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TE-EEEEETTSCEEEEECC
T ss_pred             CE-EEEecCCCCEEEEecc
Confidence            66 9999999999999983

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=9.7e-63  Score=597.31  Aligned_cols=565  Identities=22%  Similarity=0.352  Sum_probs=465.0

Q ss_pred             cccccccCCCCccccCCccccccccCCCCCcC-----CCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEe
Q 001311          292 LSKRTRPIGISDEINLPVNVLPVSFTGHSHSH-----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGT  366 (1102)
Q Consensus       292 ~~~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~  366 (1102)
                      +++++|+.||++.|      ..++|++++...     ...+.+|..+  ...+..+.+|.+.|++++|+|||++ ||+|+
T Consensus         6 ~~e~~~L~GH~~~V------~~~a~spdg~~las~~~d~~v~iWd~~--~~~~~~l~gh~~~V~~l~fspdg~~-las~~   76 (577)
T 2ymu_A            6 VKERNRLEAHSSSV------RGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDGQT-IASAS   76 (577)
T ss_dssp             CCEEEEECCCSSCE------EEEEECTTSSCEEEEETTSEEEEECTT--SCEEEEEECCSSCEEEEEECTTSSE-EEEEE
T ss_pred             cEEeeEECCCCCcE------EEEEECCCCCEEEEEeCCCEEEEEECC--CCEEEEEeCCCCCEEEEEECCCCCE-EEEEe
Confidence            35678899999999      999999998733     2334455432  2333444469999999999999996 99999


Q ss_pred             cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeE
Q 001311          367 NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH  446 (1102)
Q Consensus       367 ~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~  446 (1102)
                      .|++|+|||. +++.+.                   .+.+|.+.|.+++|+||+++|++++.|+.+++|+.......   
T Consensus        77 ~d~~i~vWd~-~~~~~~-------------------~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~~---  133 (577)
T 2ymu_A           77 DDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ---  133 (577)
T ss_dssp             TTSCEEEEET-TSCEEE-------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEEE---
T ss_pred             CCCEEEEEEC-CCCEEE-------------------EEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccceee---
Confidence            9999999996 455554                   37899999999999999999999999999999998765432   


Q ss_pred             EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEE
Q 001311          447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  526 (1102)
Q Consensus       447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~w  526 (1102)
                       ...+|...|.++.|++++.  .+++++.++.+++|+. ..........|...|.++.+  .+++.+|++++.|+.|++|
T Consensus       134 -~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~d~~v~~w  207 (577)
T 2ymu_A          134 -TLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF--SPDGQTIASASDDKTVKLW  207 (577)
T ss_dssp             -EECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEE--CTTSSCEEEEETTSEEEEE
T ss_pred             -eccCCCCceeeeeeecCCc--cceecccccceecccc-ceeeeeeccCCCcceeeeee--cCCCCEEEEEcCCCEEEEE
Confidence             4678999999999999999  6899999999999994 55666777889999999987  4566899999999999999


Q ss_pred             EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCC
Q 001311          527 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL  606 (1102)
Q Consensus       527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  606 (1102)
                      |.. .+....+..+...|.+++|+|                     ++++|++++.|+.|++||. +++.+..+..+.  
T Consensus       208 ~~~-~~~~~~~~~~~~~v~~~~~s~---------------------dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~--  262 (577)
T 2ymu_A          208 NRN-GQLLQTLTGHSSSVRGVAFSP---------------------DGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--  262 (577)
T ss_dssp             CTT-SCEEEEEECCSSCEEEEEECT---------------------TSSCEEEEETTSCEEEECT-TSCEEEEECCCS--
T ss_pred             eCC-CcEEEEEecCCCCEEEEEECC---------------------CCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--
Confidence            964 344455555555555555554                     4557999999999999996 567777777664  


Q ss_pred             CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311          607 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  686 (1102)
Q Consensus       607 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1102)
                      ..|.+++|+|+++.|++++.|+.|++|+...  +....+.+|...+.                                 
T Consensus       263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~---------------------------------  307 (577)
T 2ymu_A          263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVW---------------------------------  307 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEE---------------------------------
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeE---------------------------------
Confidence            4799999999999999999999999999643  45556666554322                                 


Q ss_pred             cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEee
Q 001311          687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  766 (1102)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw  766 (1102)
                              .+.+.+++..+++++.|+.+++|+....    ....+    .+|...|.+++|+|+++.+++++.|+.+++|
T Consensus       308 --------~~~~~~~~~~l~t~~~d~~i~~w~~~~~----~~~~~----~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~  371 (577)
T 2ymu_A          308 --------GVAFSPDGQTIASASDDKTVKLWNRNGQ----HLQTL----TGHSSSVWGVAFSPDGQTIASASDDKTVKLW  371 (577)
T ss_dssp             --------EEEECTTSSEEEEEETTSCEEEEETTSC----EEEEE----CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             --------EEEECCCCCEEEEEeCCCeEEEEeCCCC----eeEEE----eCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence                    2335667889999999999999997642    22222    3478899999999999999999999999999


Q ss_pred             eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC
Q 001311          767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP  845 (1102)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~  845 (1102)
                      +..                       +..+.. +.  +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+
T Consensus       372 ~~~-----------------------~~~~~~-~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~  424 (577)
T 2ymu_A          372 NRN-----------------------GQLLQT-LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG  424 (577)
T ss_dssp             ETT-----------------------CCEEEE-EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC
T ss_pred             cCC-----------------------CCEEEE-ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC
Confidence            852                       111111 12  2888999999999999999998 899999995 5678889999


Q ss_pred             CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccc
Q 001311          846 PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQ  925 (1102)
Q Consensus       846 ~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~  925 (1102)
                      |...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... +  
T Consensus       425 ~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~--  499 (577)
T 2ymu_A          425 HSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q--  499 (577)
T ss_dssp             CSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C--
T ss_pred             CCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C--
Confidence            999999999999 8999999999999999996 5678889999999999999999999999999999999999653 2  


Q ss_pred             ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311          926 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus       926 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
                         .+....+|.   ..|.+++|+|||++|+++ .|+.|++||. +++++..+.  +|.+.|++++|+|||++|++++.|
T Consensus       500 ---~~~~~~~h~---~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~--~h~~~v~~~~fs~dg~~l~s~~~D  570 (577)
T 2ymu_A          500 ---LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT--GHSSSVWGVAFSPDGQTIASASSD  570 (577)
T ss_dssp             ---EEEEEECCS---SCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETT
T ss_pred             ---EEEEEeCCC---CCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc--CCCCCEEEEEEcCCCCEEEEEeCC
Confidence               233445555   489999999999999995 8899999996 677777776  899999999999999999999999


Q ss_pred             CeEEEEE
Q 001311         1005 ATVCVFS 1011 (1102)
Q Consensus      1005 g~I~vwd 1011 (1102)
                      ++|++||
T Consensus       571 ~~i~~Wd  577 (577)
T 2ymu_A          571 KTVKLWN  577 (577)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=8.5e-62  Score=589.36  Aligned_cols=575  Identities=14%  Similarity=0.166  Sum_probs=440.1

Q ss_pred             cccccCCCCCcC----CCCcCCCCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeee
Q 001311          312 LPVSFTGHSHSH----SHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNF  387 (1102)
Q Consensus       312 ~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~  387 (1102)
                      +.++|++++...    .....+|.... ......+.+|.+.|++++|||||++ ||+|+.|++|+|||+.+++.....  
T Consensus        22 ~~~~~spdg~~l~~~~~~~v~l~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~-lasg~~d~~v~lWd~~~~~~~~~~--   97 (611)
T 1nr0_A           22 VVLGNTPAGDKIQYCNGTSVYTVPVGS-LTDTEIYTEHSHQTTVAKTSPSGYY-CASGDVHGNVRIWDTTQTTHILKT--   97 (611)
T ss_dssp             CCCEECTTSSEEEEEETTEEEEEETTC-SSCCEEECCCSSCEEEEEECTTSSE-EEEEETTSEEEEEESSSTTCCEEE--
T ss_pred             eEEeeCCCCCEEEeCCCCEEEEecCCC-cccCeEecCCCCceEEEEECCCCcE-EEEEeCCCCEEEeECCCCcceeeE--
Confidence            566777777522    11223343321 2233344579999999999999996 999999999999999765432210  


Q ss_pred             eeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC----CeEEEEEccCCceeeeEEEeeccccCEEEEEEcC
Q 001311          388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH  463 (1102)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~  463 (1102)
                                     .+.+|.+.|.+++|+|||++||+++.+    +.|++||  +++...   .+.+|...|.+++|+|
T Consensus        98 ---------------~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p  157 (611)
T 1nr0_A           98 ---------------TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKP  157 (611)
T ss_dssp             ---------------EEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECS
T ss_pred             ---------------eecccCCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECC
Confidence                           367899999999999999999998875    3677776  444443   4789999999999999


Q ss_pred             CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCe
Q 001311          464 PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW  543 (1102)
Q Consensus       464 d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~  543 (1102)
                      ++.. .|++|+.|++|++||..+++++..+.+|...|.+++|+  +++.+|++++.|++|++||+.+++....+....  
T Consensus       158 ~~~~-~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fs--pdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~--  232 (611)
T 1nr0_A          158 SRPF-RIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN--PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDS--  232 (611)
T ss_dssp             SSSC-EEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEECBCTT--
T ss_pred             CCCe-EEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEEC--CCCCEEEEEECCCcEEEEECCCCcEeeeecccc--
Confidence            9874 59999999999999999999999999999999999985  567899999999999999998876655442100  


Q ss_pred             eeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC-CCCcCeEEEcCCCCEEE
Q 001311          544 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLA  622 (1102)
Q Consensus       544 v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~  622 (1102)
                                 ....+ +...+.+++|+|++++|++++.|++|++||+.+++++..+..... ...+..+.|  ++..++
T Consensus       233 -----------~~~~~-h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  298 (611)
T 1nr0_A          233 -----------LKNVA-HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV  298 (611)
T ss_dssp             -----------SSSCS-SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE
T ss_pred             -----------ccccc-cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEE
Confidence                       00001 223555666666667899999999999999999998888864321 112334455  788999


Q ss_pred             EEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCC
Q 001311          623 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV  702 (1102)
Q Consensus       623 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1102)
                      +++.||.+++|+..++ .....+.+|...+.                                         .+.+.+++
T Consensus       299 s~s~d~~i~~~~~~~~-~~~~~~~gh~~~v~-----------------------------------------~l~~spdg  336 (611)
T 1nr0_A          299 SISANGFINFVNPELG-SIDQVRYGHNKAIT-----------------------------------------ALSSSADG  336 (611)
T ss_dssp             EEETTCCEEEEETTTT-EEEEEECCCSSCEE-----------------------------------------EEEECTTS
T ss_pred             EEeCCCcEEEEeCCCC-CcceEEcCCCCCEE-----------------------------------------EEEEeCCC
Confidence            9999999999999877 56666667765433                                         23456788


Q ss_pred             CccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccc
Q 001311          703 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS  782 (1102)
Q Consensus       703 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  782 (1102)
                      .++++++.|++|++||+.......      ....+|...|.+++|++++ .+++++.|+.+++|+..........     
T Consensus       337 ~~l~s~s~D~~v~~Wd~~~~~~~~------~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~-----  404 (611)
T 1nr0_A          337 KTLFSADAEGHINSWDISTGISNR------VFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK-----  404 (611)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEE------CSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS-----
T ss_pred             CEEEEEeCCCcEEEEECCCCceee------ecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc-----
Confidence            999999999999999998643211      1113588999999999876 5889999999999987432211000     


Q ss_pred             ccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcE
Q 001311          783 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI  862 (1102)
Q Consensus       783 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~  862 (1102)
                                  .....     ......+++++|+++.++++.++.+++|+  .++ +..+. |...+.+++|+| |+++
T Consensus       405 ------------~~~~~-----~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~  462 (611)
T 1nr0_A          405 ------------AVANK-----LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQF  462 (611)
T ss_dssp             ------------CCEEE-----CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCE
T ss_pred             ------------eeeee-----cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCE
Confidence                        00000     23446789999999999888899999998  333 55554 778899999999 9999


Q ss_pred             EEEEeCCCcEEEEEeeccee--eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC-CcccceeeeecCCCCCCC
Q 001311          863 IAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPT  939 (1102)
Q Consensus       863 lasg~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~  939 (1102)
                      ||+|+.|+.|++||+.+++.  +.. .+|...|++|+|+|||++|++++.|++|++|++.+ ++....   ....+|.  
T Consensus       463 lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~---~~~~~H~--  536 (611)
T 1nr0_A          463 VAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT---NSWTFHT--  536 (611)
T ss_dssp             EEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC---CCCCCCS--
T ss_pred             EEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeee---eeeeecc--
Confidence            99999999999999987653  233 67999999999999999999999999999999986 332110   0122344  


Q ss_pred             CCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCC-CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcC
Q 001311          940 AQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus       940 ~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
                       ..|.+++|+|||++|+++ .|+.|++||+.++.........+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus       537 -~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          537 -AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             -SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             -cceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence             489999999999999994 899999999988653221123478 89999999999999 9999999999999973

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.4e-61  Score=636.55  Aligned_cols=600  Identities=14%  Similarity=0.158  Sum_probs=489.7

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      ...+|.+.|++++|||||++ +++|+.||+|+|||+.+++.+..                   +.+|.+.|.+++|+|||
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~-l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~~  669 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQR-IASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFSSDD  669 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEECTTS
T ss_pred             EEecccccEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEecCC
Confidence            34569999999999999996 99999999999999999988763                   77999999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      ++||+|+.|++|+|||+.+++.+.   .+.+|...|.+++|++++...++++|+.|+.|++||+.+++++..+.+|.+.|
T Consensus       670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v  746 (1249)
T 3sfz_A          670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV  746 (1249)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred             CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence            999999999999999999998665   57899999999999997655589999999999999999999999999999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .+++|+  +++.++++++.||.|++||+.+......+...........        ........+.+++|+|++..++++
T Consensus       747 ~~~~~s--p~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~s~dg~~l~~~  816 (1249)
T 3sfz_A          747 NHCRFS--PDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED--------PPEDVEVIVKCCSWSADGDKIIVA  816 (1249)
T ss_dssp             EEEEEC--SSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC----------------CCCCCBCCCCBCTTSSEEEEE
T ss_pred             EEEEEe--cCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCC--------ccccccceEEEEEECCCCCEEEEE
Confidence            999985  4668999999999999999988766554433221110000        001112356677888888888887


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      + ++.+.+||+.++..+..+.. .+...+.+++|+|++.++++++.||.|++|++.++ .....+.+|...+.       
T Consensus       817 ~-~~~v~~~d~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~-------  886 (1249)
T 3sfz_A          817 A-KNKVLLFDIHTSGLLAEIHT-GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVH-------  886 (1249)
T ss_dssp             E-TTEEEEEETTTCCEEEEEEC-SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEE-------
T ss_pred             c-CCcEEEEEecCCCceeEEcC-CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceE-------
Confidence            7 68999999999988877752 33457999999999999999999999999999988 66666766655433       


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccc-----------
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR-----------  729 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~-----------  729 (1102)
                                                        .+.+.+++..+++++.|+.+++|++..........           
T Consensus       887 ----------------------------------~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~  932 (1249)
T 3sfz_A          887 ----------------------------------GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE  932 (1249)
T ss_dssp             ----------------------------------EEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred             ----------------------------------EEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence                                              23456678899999999999999976421110000           


Q ss_pred             ---------------cccC----CCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccC
Q 001311          730 ---------------SLRL----PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  790 (1102)
Q Consensus       730 ---------------~~~~----~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~  790 (1102)
                                     ....    ....+...+.+++|+|+++.+++++.+|.|++|++..                    
T Consensus       933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~--------------------  992 (1249)
T 3sfz_A          933 NETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN--------------------  992 (1249)
T ss_dssp             TEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTT--------------------
T ss_pred             CCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCC--------------------
Confidence                           0000    0012346789999999999999999999999998732                    


Q ss_pred             CCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC
Q 001311          791 PSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD  869 (1102)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d  869 (1102)
                        +..... +  .+|...|.+++|+|+++++++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++++.|
T Consensus       993 --~~~~~~-~--~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~d 1064 (1249)
T 3sfz_A          993 --NRVFSS-G--VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFD 1064 (1249)
T ss_dssp             --TSCEEE-C--CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESS
T ss_pred             --Cceeee-c--ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECC
Confidence              221111 2  23889999999999999999998 9999999999987764 557999999999999 55 56788999


Q ss_pred             CcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311          870 SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  949 (1102)
Q Consensus       870 g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  949 (1102)
                      |.|++||+.+++....+.+|.+.|++++|+||+++|++++.|++|++||+.+++.     .....+|.   ..|.+++|+
T Consensus      1065 g~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-----~~~l~~h~---~~v~~~~~s 1136 (1249)
T 3sfz_A         1065 GTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----LHELKGHN---GCVRCSAFS 1136 (1249)
T ss_dssp             SEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-----SBCCCCCS---SCEEEEEEC
T ss_pred             CcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-----eeeeccCC---CcEEEEEEC
Confidence            9999999999999999999999999999999999999999999999999988653     33444554   479999999


Q ss_pred             cCCcEEEEE-eCCeEEEEEcCCceEeeeec-------cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311          950 QDQIHFLVV-HETQLAIFETTKLECVKQWV-------PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       950 pdg~~l~~~-~d~~i~iwd~~~~~~~~~~~-------~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
                      |||++|+++ .||.|++||+.+++.+..+.       ..+|.+.|++++|+|||++|++++  |.|++||+.+++.+..+
T Consensus      1137 ~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~ 1214 (1249)
T 3sfz_A         1137 LDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTF 1214 (1249)
T ss_dssp             SSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCC
T ss_pred             CCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeee
Confidence            999999995 78999999999998877651       136889999999999999999885  99999999999887655


Q ss_pred             CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311         1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      .       +| ...+.  +++|+| |+.+|++++.||.|++|++.
T Consensus      1215 ~-------~~-~~~i~--~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1215 Y-------TN-GTNLK--KIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             C-------CS-SCCCC--CCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred             e-------cc-CCccc--EEEECC-CCCEEEEecCCcEEEEEeec
Confidence            4       22 22255  799999 68999999999999999985

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.9e-58  Score=564.73  Aligned_cols=559  Identities=11%  Similarity=0.143  Sum_probs=456.2

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCC----eeEEeeeeeeeccCCCCccccccccCCCCCC-eEEEEEcc
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR----ERLVLRNFKVWDLGACSMPLQAALVKDPGVS-VNRVIWSP  418 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~sp  418 (1102)
                      .|.+.|++++|+|||++ |++++ ++.|+|||+.++    +...                   .+.+|.+. |.+++|+|
T Consensus        16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp   74 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP   74 (615)
T ss_dssp             CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred             CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence            47899999999999996 77776 789999999987    5554                   47899999 99999999


Q ss_pred             --CCCeEEEEECCCeEEEEEccCCc-----eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC----CcEEEEeCCCC
Q 001311          419 --DGSLFGVAYSRHIVQIYSYHGGD-----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD----KTIKVWDATNG  487 (1102)
Q Consensus       419 --dg~~las~~~d~~v~vwd~~~~~-----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d----~~i~vWd~~~~  487 (1102)
                        |+++||+|+.||.|+|||+.+++     .......+.+|...|.+++|+|+++  +|++++.+    +.|++||  ++
T Consensus        75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~  150 (615)
T 1pgu_A           75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SG  150 (615)
T ss_dssp             STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TC
T ss_pred             CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CC
Confidence              99999999999999999998651     1223446788999999999999999  78888877    6788887  77


Q ss_pred             eeeEEeecCCCCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCeeeecCCCC---eeeEEEEccCCceeeeccccC
Q 001311          488 AKQYIFEGHEAPVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGR---WCTTMAYSADGTRTYQGFRKR  563 (1102)
Q Consensus       488 ~~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~~~~~~~~~~~~~  563 (1102)
                      +.+..+.+|...|.+++|+++  +. ++++++.|+.|++||+.+.+....+..+..   .|.+++               
T Consensus       151 ~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~---------------  213 (615)
T 1pgu_A          151 NSLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE---------------  213 (615)
T ss_dssp             CEEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE---------------
T ss_pred             CcceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE---------------
Confidence            889999999999999998644  44 899999999999999988776666665555   455555               


Q ss_pred             ceeEEEEcCC-CCEEEEEeCCCeEEEEECCCcceEEEE-c---CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          564 SLGVVQFDTT-KNRFLAAGDDFSIKFWDMDSVQLLTSI-D---ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       564 ~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                            |+|+ +++|++++.||.|++||+.+++.+..+ .   .+  ...|.+++|+ ++.+|++++.||.|++||+.++
T Consensus       214 ------~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~  284 (615)
T 1pgu_A          214 ------FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTS  284 (615)
T ss_dssp             ------ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTT
T ss_pred             ------ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC
Confidence                  4555 568999999999999999999998888 3   34  4479999999 9999999999999999999987


Q ss_pred             ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311          639 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  718 (1102)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~  718 (1102)
                       +.+..+..+......                                      .......+++..+++++.++.+++|+
T Consensus       285 -~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~l~~~~~~g~i~~~d  325 (615)
T 1pgu_A          285 -KCVQKWTLDKQQLGN--------------------------------------QQVGVVATGNGRIISLSLDGTLNFYE  325 (615)
T ss_dssp             -EEEEEEECCTTCGGG--------------------------------------CEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             -cEEEEEcCCCCcccC--------------------------------------ceeEEEeCCCCeEEEEECCCCEEEEE
Confidence             555555443211000                                      00011123678899999999999999


Q ss_pred             cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311          719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  798 (1102)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  798 (1102)
                      +......   ..+    .+|...|.+++| |+   +++++.||.|++|++.                         .   
T Consensus       326 ~~~~~~~---~~~----~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~---  366 (615)
T 1pgu_A          326 LGHDEVL---KTI----SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------S---  366 (615)
T ss_dssp             TTEEEEE---EEE----CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------E---
T ss_pred             CCCCcEE---EEE----eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------h---
Confidence            8863221   111    348899999999 88   9999999999999862                         0   


Q ss_pred             ccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          799 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       799 ~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                       +. ..|...|.+++| +++..+++++ |+.|++||+.+++...       .+.+++|+| ++.+++++ .++.+++|++
T Consensus       367 -~~-~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~  434 (615)
T 1pgu_A          367 -MH-QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLILQS  434 (615)
T ss_dssp             -EE-CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEEET
T ss_pred             -hc-CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEEec
Confidence             11 238899999999 6677788877 9999999987755432       688999999 88888877 8899999999


Q ss_pred             ecceeeeeeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEE
Q 001311          878 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFL  956 (1102)
Q Consensus       878 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  956 (1102)
                      .+++.+..+. |...+++++|+  +++|++++. |+.|++||+.+++...    ....+|.   ..|.+++|+|+|++|+
T Consensus       435 ~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~---~~v~~~~~s~~g~~l~  504 (615)
T 1pgu_A          435 FTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR---AKPSYISISPSETYIA  504 (615)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS---SCEEEEEECTTSSEEE
T ss_pred             cCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc---CceEEEEECCCCCEEE
Confidence            8898888876 88899999999  889999999 9999999998854311    3344444   4899999999999999


Q ss_pred             EE-eCCeEEEEEcCCceEeeeeccCC-CCCCeeEEEEcC----------CCcEEEEEeCCCeEEEEEcCCc-eeEEEeCC
Q 001311          957 VV-HETQLAIFETTKLECVKQWVPRE-SSAPITHATFSC----------DSQLVYACFLDATVCVFSAANL-KLRCRINP 1023 (1102)
Q Consensus       957 ~~-~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~sp----------d~~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~ 1023 (1102)
                      ++ .|+.|++||+.+++.+..+.  + |...|++++|+|          |+++|++++.||.|++||+.++ +.+..+. 
T Consensus       505 ~~~~dg~i~iw~~~~~~~~~~~~--~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-  581 (615)
T 1pgu_A          505 AGDVMGKILLYDLQSREVKTSRW--AFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-  581 (615)
T ss_dssp             EEETTSCEEEEETTTTEEEECCS--CCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-
T ss_pred             EcCCCCeEEEeeCCCCcceeEee--cCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh-
Confidence            95 88999999999999988765  5 899999999999          9999999999999999999998 6776655 


Q ss_pred             CcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1024 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1024 ~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                            +|... |.  +++|+| |+. |++++.||.|++|++.+
T Consensus       582 ------~h~~~-v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          582 ------AHKDG-VN--NLLWET-PST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             ------SSTTC-EE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred             ------cCccc-eE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence                  44333 55  899999 567 99999999999999975

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.7e-57  Score=594.98  Aligned_cols=568  Identities=17%  Similarity=0.218  Sum_probs=462.9

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+.+|.+.|++++|||||++||+|+.||+|+|||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++++.|++|+||
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW  684 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence            578999999999999999999999999999999999988665   5789999999999999999  89999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      |+.+++++..+.+|...|.+++|++..++.++++|+.|+.|++||+.++.....+..|...|.+++|+|++         
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~---------  755 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD---------  755 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---------
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---------
Confidence            99999999999999999999999887777899999999999999999988777777776666666655555         


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC-----------CCCCcCeEEEcCCCCEEEEEECCCcEE
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-----------GLPASPRIRFNKDGCLLAVSTNDNGIK  631 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~~~~s~~~~~l~~~~~dg~i~  631 (1102)
                                  +++++++.||.|++||+.+++....+....           ....+.+++|+|+|+.+++++ ++.+.
T Consensus       756 ------------~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~  822 (1249)
T 3sfz_A          756 ------------ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVL  822 (1249)
T ss_dssp             ------------TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEE
T ss_pred             ------------CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEE
Confidence                        579999999999999999988777664321           123578999999999999987 68999


Q ss_pred             EEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCC
Q 001311          632 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  711 (1102)
Q Consensus       632 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  711 (1102)
                      +||..++........+|...+                                         ....+.+++..+++++.+
T Consensus       823 ~~d~~~~~~~~~~~~~~~~~v-----------------------------------------~~~~~sp~~~~l~~~~~d  861 (1249)
T 3sfz_A          823 LFDIHTSGLLAEIHTGHHSTI-----------------------------------------QYCDFSPYDHLAVIALSQ  861 (1249)
T ss_dssp             EEETTTCCEEEEEECSSSSCC-----------------------------------------CEEEECSSTTEEEEECSS
T ss_pred             EEEecCCCceeEEcCCCCCce-----------------------------------------EEEEEcCCCCEEEEEeCC
Confidence            999998844333333443321                                         123456788999999999


Q ss_pred             CccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcc------------
Q 001311          712 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKA------------  779 (1102)
Q Consensus       712 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~------------  779 (1102)
                      +.+++|++........   +    .+|...|.+++|+|+|+.+++++.|+.+++|++...........            
T Consensus       862 g~v~vwd~~~~~~~~~---~----~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~  934 (1249)
T 3sfz_A          862 YCVELWNIDSRLKVAD---C----RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENE  934 (1249)
T ss_dssp             SCEEEEETTTTEEEEE---E----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTE
T ss_pred             CeEEEEEcCCCceeee---c----CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCC
Confidence            9999999986432211   1    35889999999999999999999999999999865321111000            


Q ss_pred             --cc----cccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE
Q 001311          780 --TA----SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF  852 (1102)
Q Consensus       780 --~~----~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~  852 (1102)
                        ..    .....+++..++.....      +...+.+++++|+++++++|+ +|.|++||+.+++....+.+|...|++
T Consensus       935 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~ 1008 (1249)
T 3sfz_A          935 TMVLAVDNIRGLQLIAGKTGQIDYL------PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRH 1008 (1249)
T ss_dssp             EEEEEEESSSSEEEEEESSCCEEEE------CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCC
T ss_pred             cEEEEecCCcceEEEecCcceEEEc------ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEE
Confidence              00    00122333333332221      456799999999999999999 899999999999999999999999999


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeec
Q 001311          853 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI  932 (1102)
Q Consensus       853 l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~  932 (1102)
                      ++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.|++|++||+.+++..     ..
T Consensus      1009 l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~ 1080 (1249)
T 3sfz_A         1009 IQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RD 1080 (1249)
T ss_dssp             EEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EE
T ss_pred             EEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EE
Confidence            99999 8999999999999999999998866 456899999999999976 6788999999999999987643     22


Q ss_pred             CCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          933 PTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       933 ~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                      ..+|.   ..|.+++|+|+|++++++ .|+.|++||+.+++.+..+.  +|...|++++|+|||++|++++.||.|++||
T Consensus      1081 ~~~~~---~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~--~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd 1155 (1249)
T 3sfz_A         1081 FTCHQ---GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELK--GHNGCVRCSAFSLDGILLATGDDNGEIRIWN 1155 (1249)
T ss_dssp             EECCS---SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCC--CCSSCEEEEEECSSSSEEEEEETTSCCCEEE
T ss_pred             EcccC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeec--cCCCcEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            33443   378999999999999995 89999999999999887765  8899999999999999999999999999999


Q ss_pred             cCCceeEEEeCCCccc--CCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCc
Q 001311         1012 AANLKLRCRINPSAYL--PAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEG 1070 (1102)
Q Consensus      1012 ~~~~~~~~~~~~~~~~--~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~ 1070 (1102)
                      +.+++.+..+......  ..+|.. .+.  +++|+| |+.+|++++  |.|++||+.+++.
T Consensus      1156 ~~~~~~~~~~~~~~~~~~~~~~~~-~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1156 VSDGQLLHSCAPISVEEGTATHGG-WVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             SSSSCCCCCCCCCC-------CCS-CCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred             CCCCceEEEeccccccccccccCc-eEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence            9999887655321111  112322 255  899999 688998885  9999999999874

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-55  Score=553.45  Aligned_cols=621  Identities=10%  Similarity=0.099  Sum_probs=436.6

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      ....++|.+.|++++|+|+|++ ||+|+.||+|+|||..+.+...                    ...|...|.+++|+|
T Consensus        10 ~~~~~gh~~~V~~lafspdg~~-lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp   68 (902)
T 2oaj_A           10 ETNKYGMSSKPIAAAFDFTQNL-LAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK   68 (902)
T ss_dssp             EEEEEECSSCEEEEEEETTTTE-EEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET
T ss_pred             cccccCCCCCcEEEEECCCCCE-EEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC
Confidence            3445689999999999999995 9999999999999998776553                    235788999999999


Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee--------
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--------  490 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~--------  490 (1102)
                       |++|++++.|++|+|||+.+++.+..   +. |.+.|++++|+|+++  +|++|+.||+|++||+.++++.        
T Consensus        69 -g~~L~S~s~D~~v~lWd~~~~~~~~~---~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~  141 (902)
T 2oaj_A           69 -GIYLVVINAKDTVYVLSLYSQKVLTT---VF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ  141 (902)
T ss_dssp             -TTEEEEEETTCEEEEEETTTCSEEEE---EE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred             -CCEEEEEECcCeEEEEECCCCcEEEE---Ec-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence             88999999999999999999887653   43 778999999999999  7999999999999999998864        


Q ss_pred             ---EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCc--eeeeccccCce
Q 001311          491 ---YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT--RTYQGFRKRSL  565 (1102)
Q Consensus       491 ---~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~--~~~~~~~~~~i  565 (1102)
                         ..+.+|.+.|.+++|++. ++..+++|+.||.| +||+++.+....+..+...-     .+.+.  .....++...+
T Consensus       142 ~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~h~~~V  214 (902)
T 2oaj_A          142 KSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPF-----APGGDFSEKTNEKRTPKV  214 (902)
T ss_dssp             HHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTT-----CCCSTTCCCTTSCBCCCE
T ss_pred             ccccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCc-----CCCcccccccccccCCCe
Confidence               234679999999999753 33689999999999 99999876665554431000     00000  00111223468


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc-----CCC-----------CCCCcCeEEEc----CCC-CEEEEE
Q 001311          566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-----ADG-----------GLPASPRIRFN----KDG-CLLAVS  624 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~-----------~~~~v~~~~~s----~~~-~~l~~~  624 (1102)
                      .+++|+|++++|++++.||.|++||+.+++++....     .+.           +...|.+++|+    |++ .+|++|
T Consensus       215 ~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg  294 (902)
T 2oaj_A          215 IQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH  294 (902)
T ss_dssp             EEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence            888899999999999999999999999998776422     121           23368899995    443 567777


Q ss_pred             ECC-----CcEEEEEccCCcc-----------------ceeecc-cccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001311          625 TND-----NGIKILATSDGIR-----------------LLRTFE-NLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  681 (1102)
Q Consensus       625 ~~d-----g~i~iwd~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (1102)
                      +.+     +.+.+|+......                 ..+.+. .+...+.        .+..                
T Consensus       295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~--------~~~~----------------  350 (902)
T 2oaj_A          295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV--------NILP----------------  350 (902)
T ss_dssp             ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE--------EEEE----------------
T ss_pred             CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceE--------EEEE----------------
Confidence            665     3788888531100                 000000 0000000        0000                


Q ss_pred             ccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc----cccc--------------------------
Q 001311          682 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ----CRSL--------------------------  731 (1102)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~----~~~~--------------------------  731 (1102)
                             ............+...+++.+.|+.+++|++........    ...+                          
T Consensus       351 -------~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~  423 (902)
T 2oaj_A          351 -------IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSA  423 (902)
T ss_dssp             -------CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHT
T ss_pred             -------CCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhc
Confidence                   000000001112344677888899999999854321100    0000                          


Q ss_pred             ----cCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311          732 ----RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  807 (1102)
Q Consensus       732 ----~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  807 (1102)
                          ..+-.+|...+..++|+|+++.+++++.|++|++||+..+.....         .++...    ... ....+|..
T Consensus       424 ~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~-~~~~~h~~  489 (902)
T 2oaj_A          424 AQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSR-TLNKAKEL  489 (902)
T ss_dssp             TBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------BCEEEE----HHH-HTTCSSSC
T ss_pred             ccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------ceEEee----chh-hcCCCCCC
Confidence                001134555666777889999999999999999999865421000         000000    000 00124889


Q ss_pred             CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCc---------------------------------------------eee
Q 001311          808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFK---------------------------------------------TMA  841 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~---------------------------------------------~~~  841 (1102)
                      .|.+++|+||+++||+|+ ||+|+|||+.+++                                             ++.
T Consensus       490 ~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  569 (902)
T 2oaj_A          490 AVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPST  569 (902)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEE
T ss_pred             ceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeE
Confidence            999999999999999999 9999999998652                                             367


Q ss_pred             eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee-----eec-cccccceeEEEe-----cCC---CEEEE
Q 001311          842 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-----KLK-GHSKRITGLAFS-----HAL---NVLVS  907 (1102)
Q Consensus       842 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~d~---~~l~s  907 (1102)
                      .+.+|.+.|++++||| || +||+|+.|++|+|||+.+...+.     .+. +|.+.|++|+|+     |||   ++|++
T Consensus       570 ~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~s  647 (902)
T 2oaj_A          570 AVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVC  647 (902)
T ss_dssp             EECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEE
T ss_pred             EEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEE
Confidence            7889999999999999 88 99999999999999998876553     343 899999999999     885   89999


Q ss_pred             EcCCCcEEEEEc---CCCcccceeeeecCCCCCC--CCCCCcEEE-Ec----------------------cCCcEEEEEe
Q 001311          908 SGADSQLCVWSS---DGWEKQKNRFLQIPTGRTP--TAQSDTRVQ-FH----------------------QDQIHFLVVH  959 (1102)
Q Consensus       908 ~s~Dg~i~vwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~~~-~s----------------------pdg~~l~~~~  959 (1102)
                      ++.|++|++||+   .+++..     ..+.+|..  ....|..++ |+                      ++|..|+++ 
T Consensus       648 gs~D~tv~~wd~~p~~~g~~~-----~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-  721 (902)
T 2oaj_A          648 GTDMGEVITYKILPASGGKFD-----VQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-  721 (902)
T ss_dssp             EETTSEEEEEEEEECGGGCEE-----EEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-
T ss_pred             EecCCcEEEEEEecCCCCcEE-----EEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-
Confidence            999999999999   555432     12222210  113556665 65                      556555554 


Q ss_pred             CCeEEEEEcCCceEeeeeccCCCCCCeeEE---E------EcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCC
Q 001311          960 ETQLAIFETTKLECVKQWVPRESSAPITHA---T------FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1030 (1102)
Q Consensus       960 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l---~------~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~g 1030 (1102)
                      +..|+||++.++++.+...  .|.-.+.++   .      |++++..|++++.||+|++|++.+++.+..+.......  
T Consensus       722 ~~~ir~~~~~~~k~~~k~~--~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~~~--  797 (902)
T 2oaj_A          722 FDDIRLITLGKSKSTHKGF--KYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHIPFPIA--  797 (902)
T ss_dssp             SSEEEEECTTCCCEEEEEC--SSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEECSSCCC--
T ss_pred             ccceEEEeCccccceeeEc--ccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccCCcccc--
Confidence            8899999999999987764  455556665   5      78899999999999999999999999999887322111  


Q ss_pred             CCCCcccceEEEecCCCCCEEEEEec
Q 001311         1031 VSSSNVHPLVIAAHPQEPNEFALGLS 1056 (1102)
Q Consensus      1031 h~~~~v~~~~v~f~p~d~~~l~s~~~ 1056 (1102)
                        ...+.  ...|++ +|+.+.-.+.
T Consensus       798 --~~~~~--~~~~~~-~G~~~~~~~~  818 (902)
T 2oaj_A          798 --AKYIT--ESSVLR-NGDIAIRVSE  818 (902)
T ss_dssp             --HHHHT--TCEECT-TSCEEEECSS
T ss_pred             --ccccc--ceEEcC-CCCEEEEeCh
Confidence              00111  456666 4676665543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.8e-55  Score=538.22  Aligned_cols=547  Identities=12%  Similarity=0.146  Sum_probs=448.4

Q ss_pred             cccccCCCCCcC----CCCcCCCCCCCCC---ccceeeccCCCC-eeEEEEec--CCCeEEEEEecCCeEEEEeCCCC--
Q 001311          312 LPVSFTGHSHSH----SHSQAFSTPEDLP---KTVTRTLNQGSS-PMSMDFHP--VQQTLLLVGTNVGDIGLWEVGSR--  379 (1102)
Q Consensus       312 ~~v~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~h~~~-v~~v~~sp--dg~~llasg~~d~~i~iWd~~~~--  379 (1102)
                      ..++|++++...    ...+.+|..+...   .....+.+|.+. |++++|+|  ++++ |++|+.||.|+|||+.++  
T Consensus        22 ~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~-l~s~~~dg~v~vw~~~~~~~  100 (615)
T 1pgu_A           22 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQY-LCSGDESGKVIVWGWTFDKE  100 (615)
T ss_dssp             CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCE-EEEEETTSEEEEEEEEEEGG
T ss_pred             eEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCE-EEEecCCCEEEEEeCCCCcc
Confidence            666677766422    2234455544220   344555569999 99999999  9995 999999999999999755  


Q ss_pred             ------eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC----CeEEEEEccCCceeeeEEEe
Q 001311          380 ------ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR----HIVQIYSYHGGDEVRQHLEI  449 (1102)
Q Consensus       380 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d----~~v~vwd~~~~~~~~~~~~l  449 (1102)
                            +.+.                   .+.+|...|.+++|+|++++|++++.+    +.|++||  +++.+.   .+
T Consensus       101 ~~~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~  156 (615)
T 1pgu_A          101 SNSVEVNVKS-------------------EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EV  156 (615)
T ss_dssp             GTEEEEEEEE-------------------EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---EC
T ss_pred             cccccccccc-------------------hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---ee
Confidence                  2222                   367899999999999999999999988    6888888  444443   57


Q ss_pred             eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC---CeEEEeeeecCC-ccEEEEEeCCCeEEE
Q 001311          450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA---PVYSVCPHHKEN-IQFIFSTALDGKIKA  525 (1102)
Q Consensus       450 ~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~---~v~~v~~~~~~~-~~~l~s~s~dg~i~~  525 (1102)
                      .+|...|.+++|+|+++. ++++++.|+.|++||+.+++.+..+.+|..   .|.+++|++  + +.+|++++.||.|++
T Consensus       157 ~~~~~~v~~~~~~~~~~~-~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~v  233 (615)
T 1pgu_A          157 SGHSQRINACHLKQSRPM-RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISC  233 (615)
T ss_dssp             CSCSSCEEEEEECSSSSC-EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEE
T ss_pred             ecCCccEEEEEECCCCCc-EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEE
Confidence            899999999999999975 699999999999999999999999999999   999999854  4 689999999999999


Q ss_pred             EEcCCCCCeeee-c---CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc
Q 001311          526 WLYDNLGSRVDY-E---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID  601 (1102)
Q Consensus       526 wd~~~~~~~~~~-~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  601 (1102)
                      ||+.+++....+ .   .+...|.+++|+                      ++++|++++.|+.|++||+.+++.+..+.
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  291 (615)
T 1pgu_A          234 FDGKSGEFLKYIEDDQEPVQGGIFALSWL----------------------DSQKFATVGADATIRVWDVTTSKCVQKWT  291 (615)
T ss_dssp             EETTTCCEEEECCBTTBCCCSCEEEEEES----------------------SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EECCCCCEeEEecccccccCCceEEEEEc----------------------CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence            999987776666 4   555555555555                      44679999999999999999999998887


Q ss_pred             CCCC--CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccc
Q 001311          602 ADGG--LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  679 (1102)
Q Consensus       602 ~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1102)
                      .+..  ...+.++.|. ++.++++++.||.|++||+.++ +.+..+.+|...+..                         
T Consensus       292 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~~~~~~~v~~-------------------------  344 (615)
T 1pgu_A          292 LDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTISGHNKGITA-------------------------  344 (615)
T ss_dssp             CCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEECCCSSCEEE-------------------------
T ss_pred             CCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEEeCCCCCEEE-------------------------
Confidence            6521  2346677775 9999999999999999999886 666677666554331                         


Q ss_pred             ccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec
Q 001311          680 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS  759 (1102)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~  759 (1102)
                                      +.+ ++   +++++.|+.+++|++..         +.   ..|...|.+++| +++..+++++.
T Consensus       345 ----------------~~~-~~---l~~~~~dg~i~~w~~~~---------~~---~~~~~~v~~~~~-~~~~~l~~~~~  391 (615)
T 1pgu_A          345 ----------------LTV-NP---LISGSYDGRIMEWSSSS---------MH---QDHSNLIVSLDN-SKAQEYSSISW  391 (615)
T ss_dssp             ----------------EET-TT---TEEEETTSCEEETTTTE---------EE---CCCCSCEEEEEC-CSTTCCEEEET
T ss_pred             ----------------EEe-cC---cEEECCCCeEEEEEchh---------hc---CcccCceEEEEE-CCCcEEEEEeC
Confidence                            122 23   89999999999999871         11   348899999999 66778999999


Q ss_pred             CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCce
Q 001311          760 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT  839 (1102)
Q Consensus       760 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~  839 (1102)
                      |+.+++|++.....                                ...+.+++++|++.+++++.++.+.+|++.+++.
T Consensus       392 d~~i~~~~~~~~~~--------------------------------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~  439 (615)
T 1pgu_A          392 DDTLKVNGITKHEF--------------------------------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI  439 (615)
T ss_dssp             TTEEEETTEEEEEC--------------------------------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCEEEEEcccCcc--------------------------------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCce
Confidence            99999998743211                                1257889999999999998899999999999998


Q ss_pred             eeeecCCCCCeeEEEEecCCCcEEEEEeC-CCcEEEEEeecceee-eeeccccccceeEEEecCCCEEEEEcCCCcEEEE
Q 001311          840 MATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVK-SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW  917 (1102)
Q Consensus       840 ~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vw  917 (1102)
                      +..+. |...+.+++|+   +++|++++. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.|+.|++|
T Consensus       440 ~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw  515 (615)
T 1pgu_A          440 IKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLY  515 (615)
T ss_dssp             EEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             eeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEe
Confidence            88887 88899999998   679999999 999999999988766 7788899999999999999999999999999999


Q ss_pred             EcCCCcccceeeeecCCC-CCCCCCCCcEEEEcc----------CCcEEEEE-eCCeEEEEEcCCc-eEeeeeccCCCCC
Q 001311          918 SSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQ----------DQIHFLVV-HETQLAIFETTKL-ECVKQWVPRESSA  984 (1102)
Q Consensus       918 d~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~sp----------dg~~l~~~-~d~~i~iwd~~~~-~~~~~~~~~~h~~  984 (1102)
                      |+.+++.     +....+ |.   ..|.+++|+|          ++++|+++ .|+.|++||+.++ +.+..+.  +|..
T Consensus       516 ~~~~~~~-----~~~~~~~h~---~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~  585 (615)
T 1pgu_A          516 DLQSREV-----KTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKD  585 (615)
T ss_dssp             ETTTTEE-----EECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTT
T ss_pred             eCCCCcc-----eeEeecCCC---CceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCcc
Confidence            9998654     333333 43   4899999999          99999995 7999999999998 6666654  8899


Q ss_pred             CeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311          985 PITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       985 ~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      .|++++|+||++ |++++.||+|++|+++++
T Consensus       586 ~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~  615 (615)
T 1pgu_A          586 GVNNLLWETPST-LVSSGADACIKRWNVVLE  615 (615)
T ss_dssp             CEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred             ceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence            999999999999 999999999999998753

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-54  Score=543.07  Aligned_cols=581  Identities=11%  Similarity=0.083  Sum_probs=415.9

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      ..+|.+.|++++|+||+++||+|+.||+|+||+..+++...    ...|...|.+++|+| ++  +|++++.|++|++||
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS   85 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence            45899999999999999999999999999999998766443    235888999999999 77  799999999999999


Q ss_pred             CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe-----------eeecCCCCeeeEEEEccC
Q 001311          484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-----------VDYEAPGRWCTTMAYSAD  552 (1102)
Q Consensus       484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~~  552 (1102)
                      +.+++++..+. |.+.|++++|+  +++++|++|+.||.|++||+++....           ..+..|..          
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~----------  152 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTD--ASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS----------  152 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECC--TTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC----------
T ss_pred             CCCCcEEEEEc-CCCCEEEEEEC--CCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCC----------
Confidence            99999999887 77899999985  56689999999999999999875432           11122333          


Q ss_pred             CceeeeccccCceeEEEEcCC-CCEEEEEeCCCeEEEEECCCcceEEEEcCC----------------CCCCCcCeEEEc
Q 001311          553 GTRTYQGFRKRSLGVVQFDTT-KNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------GGLPASPRIRFN  615 (1102)
Q Consensus       553 ~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------~~~~~v~~~~~s  615 (1102)
                                 .+.+++|+|+ +..+++++.||.| +||+++++.+..+..+                .+...|.+++|+
T Consensus       153 -----------~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs  220 (902)
T 2oaj_A          153 -----------PIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH  220 (902)
T ss_dssp             -----------CCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC
T ss_pred             -----------CeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEc
Confidence                       4555555553 3578999999999 9999999998888755                112469999999


Q ss_pred             CCCCEEEEEECCCcEEEEEccCCccceee--cc---cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccC
Q 001311          616 KDGCLLAVSTNDNGIKILATSDGIRLLRT--FE---NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIP  690 (1102)
Q Consensus       616 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (1102)
                      |+|++|++++.||.|++||+.++ +.+..  +.   .|... ...+..   .+.                 ...++    
T Consensus       221 pdg~~lasgs~Dg~i~lWd~~~g-~~~~~r~l~~~~~~~~~-~~~~~~---~~~-----------------~~~~V----  274 (902)
T 2oaj_A          221 PNSLHIITIHEDNSLVFWDANSG-HMIMARTVFETEINVPQ-PDYIRD---SST-----------------NAAKI----  274 (902)
T ss_dssp             TTSSEEEEEETTCCEEEEETTTC-CEEEEECSSCSCTTSCC-TTCCCC---CSS-----------------CCCEE----
T ss_pred             CCCCEEEEEECCCeEEEEECCCC-cEEEEEeecccccCCCC-CcCCCC---Ccc-----------------ccCCe----
Confidence            99999999999999999999887 33321  21   11100 000000   000                 00000    


Q ss_pred             CCCCCccc----cCCC-CccccccCC-----CccceEecccCCC---------------CCccccccCCCcccccceEEE
Q 001311          691 GMNGDVRS----LADV-KPRITEESN-----DKSKVWKLTELSE---------------PNQCRSLRLPENLRATKISRL  745 (1102)
Q Consensus       691 ~~~~~~~~----~~~~-~~l~~~~~d-----~~i~~w~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~  745 (1102)
                         ..+.+    .+++ ..+++++.+     ..+.+|++.....               ....+.+.   ..+...|.++
T Consensus       275 ---~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~v~~~  348 (902)
T 2oaj_A          275 ---SKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFP---LPTNVPIVNI  348 (902)
T ss_dssp             ---EEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEEC---CSSSSCEEEE
T ss_pred             ---eEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEe---cCCCCceEEE
Confidence               00111    2333 455666554     3677888532100               00111111   1245678888


Q ss_pred             EEcc----------CCceEEEeecCceEEeeeccccccCCC---------Cc---c----cccccceeccCCC---cccc
Q 001311          746 IFTN----------SGNAILALASNAIHLLWKWQRTERNSS---------GK---A----TASVAPQLWQPPS---GIMM  796 (1102)
Q Consensus       746 ~~s~----------~g~~l~~~~~dg~i~iw~~~~~~~~~~---------~~---~----~~~~~~~~w~~~~---~~~~  796 (1102)
                      .+.+          +...+++++.|+.+++|++..+.....         +.   .    ......++|+...   +.. 
T Consensus       349 ~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-  427 (902)
T 2oaj_A          349 LPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK-  427 (902)
T ss_dssp             EECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC-
T ss_pred             EECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC-
Confidence            8765          334688888999999999854311000         00   0    0001112343210   111 


Q ss_pred             ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCcee--eee---------cCCCCCeeEEEEecCCCcEEE
Q 001311          797 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--ATF---------MPPPPAATFLAFHPQDNNIIA  864 (1102)
Q Consensus       797 ~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~--~~~---------~~~~~~i~~l~~sp~d~~~la  864 (1102)
                      ...+.  +|...+.+++|+||+++|++|+ |++|++||+.++...  ..+         .+|...|.+++|+| |+++||
T Consensus       428 ~~~l~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LA  504 (902)
T 2oaj_A          428 DYLLK--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELA  504 (902)
T ss_dssp             CCSCC--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEE
T ss_pred             CCccc--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEE
Confidence            11232  3777888899999999999999 999999999887432  111         17889999999999 999999


Q ss_pred             EEeCCCcEEEEEeecce---------------------------------------------eeeeeccccccceeEEEe
Q 001311          865 IGMDDSSIQIYNVRVDE---------------------------------------------VKSKLKGHSKRITGLAFS  899 (1102)
Q Consensus       865 sg~~dg~v~vwd~~~~~---------------------------------------------~~~~l~~h~~~V~~l~~s  899 (1102)
                      +|+.||+|+|||+.+++                                             ++..+.+|.+.|++|+||
T Consensus       505 sgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafS  584 (902)
T 2oaj_A          505 VSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNS  584 (902)
T ss_dssp             EEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEEC
T ss_pred             EEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEec
Confidence            99999999999998762                                             467788999999999999


Q ss_pred             cCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCC-CCCCCCCCCcEEEEc-----cCC---cEEEEE-eCCeEEEEEc-
Q 001311          900 HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFH-----QDQ---IHFLVV-HETQLAIFET-  968 (1102)
Q Consensus       900 ~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s-----pdg---~~l~~~-~d~~i~iwd~-  968 (1102)
                      ||| +||+|+.|++|++||+++........+..+. +|.   ..|++++|+     |||   ++|+++ .|++|++||+ 
T Consensus       585 pdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~---~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~  660 (902)
T 2oaj_A          585 NIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS---ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL  660 (902)
T ss_dssp             BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC---CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred             CCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc---cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence            999 9999999999999999875542211122332 555   489999999     886   888884 8999999999 


Q ss_pred             --CCceEeeeeccC---CCCCCeeEEE-Ec----------------------CCCcEEEEEeCCCeEEEEEcCCceeEEE
Q 001311          969 --TKLECVKQWVPR---ESSAPITHAT-FS----------------------CDSQLVYACFLDATVCVFSAANLKLRCR 1020 (1102)
Q Consensus       969 --~~~~~~~~~~~~---~h~~~v~~l~-~s----------------------pd~~~l~s~s~Dg~I~vwd~~~~~~~~~ 1020 (1102)
                        .+|++...+..+   .|.++|.+++ |+                      +++.+|+++  +..||||++.+++..++
T Consensus       661 p~~~g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k  738 (902)
T 2oaj_A          661 PASGGKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHK  738 (902)
T ss_dssp             ECGGGCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEE
T ss_pred             cCCCCcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceee
Confidence              888887776532   1357888887 66                      556555544  88999999999998876


Q ss_pred             eCCCcccCCCCCCCcccceEE---E------ecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1021 INPSAYLPAGVSSSNVHPLVI---A------AHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1021 ~~~~~~~~~gh~~~~v~~~~v---~------f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      .-       +|. ..+.  ++   .      |++ ++..|++++.||+|++|++.+.+
T Consensus       739 ~~-------~~~-~~~~--~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~  785 (902)
T 2oaj_A          739 GF-------KYP-LAAT--GLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFK  785 (902)
T ss_dssp             EC-------SSC-EEEE--EEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCC
T ss_pred             Ec-------ccc-eeee--EEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchH
Confidence            53       221 2233  33   5      666 57899999999999999999998

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.1e-46  Score=468.55  Aligned_cols=467  Identities=16%  Similarity=0.216  Sum_probs=376.0

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      ...+|.+.|++++|||+|++ |++|+.||.|+|||+.+++.+..                   +.+|.+.|.+++|+|++
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~-la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~   67 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKFIARK   67 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGG
T ss_pred             eeecCCCceEEEEECCCCCE-EEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEEeCCC
Confidence            34569999999999999996 99999999999999999987763                   67899999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCC
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAP  499 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~  499 (1102)
                      ++||+|+.||.|+|||+.+++.+.   .+.+|.+.|++++|+|+++  +|++++.|+.|++||+.++ .....+.+|...
T Consensus        68 ~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  142 (814)
T 3mkq_A           68 NWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHF  142 (814)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSC
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCc
Confidence            999999999999999999988655   5788999999999999999  7999999999999999987 777889999999


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC--CCCEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT--TKNRF  577 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~--~~~~l  577 (1102)
                      |.+++|++ .++..|++++.||.|++||+........+..+.                    ...+.+++|+|  ++.++
T Consensus       143 v~~~~~~p-~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--------------------~~~v~~~~~~~~~~~~~l  201 (814)
T 3mkq_A          143 VMCVAFNP-KDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ--------------------ERGVNYVDYYPLPDKPYM  201 (814)
T ss_dssp             EEEEEEET-TEEEEEEEEETTSEEEEEETTCSSCSEEEECCC--------------------TTCCCEEEECCSTTCCEE
T ss_pred             EEEEEEEc-CCCCEEEEEeCCCeEEEEECCCCcceeEEecCC--------------------CCCEEEEEEEECCCCCEE
Confidence            99999864 155799999999999999998766554443322                    23455555555  66789


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  657 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  657 (1102)
                      ++++.||.|++||+.+++.+..+..+..  .|.+++|+|++.+|++++.||.|++||..++ .....+.           
T Consensus       202 ~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~-----------  267 (814)
T 3mkq_A          202 ITASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN-----------  267 (814)
T ss_dssp             EEECTTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEEC-----------
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEee-----------
Confidence            9999999999999999999988886644  7999999999999999999999999998776 3322221           


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311          658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  737 (1102)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  737 (1102)
                                                                                                     .
T Consensus       268 -------------------------------------------------------------------------------~  268 (814)
T 3mkq_A          268 -------------------------------------------------------------------------------V  268 (814)
T ss_dssp             -------------------------------------------------------------------------------C
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           1


Q ss_pred             cccceEEEEEccCCceE-EEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          738 RATKISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                      +...+.+++|+|++..+ ++++.++.+.+|++.                                     .....+.++|
T Consensus       269 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~  311 (814)
T 3mkq_A          269 GLERSWCIATHPTGRKNYIASGFDNGFTVLSLG-------------------------------------NDEPTLSLDP  311 (814)
T ss_dssp             SSSSEEEEEECTTCGGGEEEEEETTEEEEEECS-------------------------------------CCSCCEEECS
T ss_pred             CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcC-------------------------------------CCCceeEECC
Confidence            45678999999998753 666777778888751                                     1234577889


Q ss_pred             CCCeEEEEe-CC---eEEE------EEcCCCcee----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311          817 NDSYVMSAS-GG---KISL------FNMMTFKTM----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  882 (1102)
Q Consensus       817 d~~~las~s-dg---~I~i------wd~~~~~~~----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  882 (1102)
                      +++.+++++ +.   .+..      |++..+...    ..+..+...+.+++|+| ++++|++++ ||.+.+|++.....
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~~~~~~~  389 (814)
T 3mkq_A          312 VGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYTALAWRN  389 (814)
T ss_dssp             SSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEETTTTEE
T ss_pred             CCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEECccccc
Confidence            999988876 32   1222      333333322    33455677899999999 999999998 89999999764432


Q ss_pred             eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC---cEEEE-E
Q 001311          883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ---IHFLV-V  958 (1102)
Q Consensus       883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~l~~-~  958 (1102)
                           .+.+.|.+++|+||+++|++++.|++|++|+.-.             ++.   ..+..++|+|+|   .+|++ +
T Consensus       390 -----~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~-------------~~~---~~v~~~~~s~dg~~~~~l~~~~  448 (814)
T 3mkq_A          390 -----KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNFK-------------EVT---SWSVPMHSAIDRLFSGALLGVK  448 (814)
T ss_dssp             -----EEEEECSEEEECTTSSCEEEECTTCCEEEEETTE-------------ECT---TCCCCCSSCCCEEECSSSEEEE
T ss_pred             -----cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECCC-------------Ccc---ceEEcCCcCccceecceEEEEe
Confidence                 2457799999999999999999999999996432             111   256888999998   45555 6


Q ss_pred             eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEE------eCCCeEEEEE
Q 001311          959 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC------FLDATVCVFS 1011 (1102)
Q Consensus       959 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~------s~Dg~I~vwd 1011 (1102)
                      .++.|++||+.+++.+..+.  .|..   .++|+|||++|+++      +.++.+.+|.
T Consensus       449 ~d~~v~~~d~~~~~~~~~~~--~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          449 SDGFVYFFDWDNGTLVRRID--VNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             ETTEEEEECTTTCCEEEEES--SCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             cCCEEEEEECCcCcEEEEEe--cCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence            99999999999999988876  3333   99999999999999      6666555543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=7e-44  Score=450.80  Aligned_cols=467  Identities=16%  Similarity=0.211  Sum_probs=373.3

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+.+|.+.|.+++|+|||++||+|+.||.|+|||+.+++.+.   .+.+|.++|.+++|+|+++  +|++++.||.|++|
T Consensus         8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw   82 (814)
T 3mkq_A            8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF   82 (814)
T ss_dssp             EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred             eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence            478999999999999999999999999999999999987665   5778999999999999999  79999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFR  561 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  561 (1102)
                      |+.+++.+..+.+|.+.|.+++|+  +++.+|++++.||.|++||+.+. .....+..+...+.+++|+|+         
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~---------  151 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVH--PTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK---------  151 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEEC--SSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---------
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEe--CCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---------
Confidence            999999999999999999999985  55679999999999999999876 333445555555555555551         


Q ss_pred             cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC--CCCEEEEEECCCcEEEEEccCCc
Q 001311          562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--DGCLLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~  639 (1102)
                                 +++.+++++.||.|++||+.++.....+..+. ...+.+++|+|  ++.+|++++.||.|++||..++ 
T Consensus       152 -----------~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~-  218 (814)
T 3mkq_A          152 -----------DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK-  218 (814)
T ss_dssp             -----------EEEEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT-
T ss_pred             -----------CCCEEEEEeCCCeEEEEECCCCcceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC-
Confidence                       34579999999999999999888877776543 24689999999  9999999999999999998776 


Q ss_pred             cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311          640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  719 (1102)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~  719 (1102)
                      .....+.                                                                         
T Consensus       219 ~~~~~~~-------------------------------------------------------------------------  225 (814)
T 3mkq_A          219 SCVATLE-------------------------------------------------------------------------  225 (814)
T ss_dssp             EEEEEEE-------------------------------------------------------------------------
T ss_pred             cEEEEEc-------------------------------------------------------------------------
Confidence            3332221                                                                         


Q ss_pred             ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311          720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  799 (1102)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  799 (1102)
                                       +|...|.+++|+|++..+++++.||.|++|++..                      +..... 
T Consensus       226 -----------------~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~----------------------~~~~~~-  265 (814)
T 3mkq_A          226 -----------------GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST----------------------YKVEKT-  265 (814)
T ss_dssp             -----------------CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT----------------------CSEEEE-
T ss_pred             -----------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------------------CcEEEE-
Confidence                             2567899999999999999999999999998732                      221111 


Q ss_pred             cCCCCCCCCeeEEEEecCCC--eEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCc---EEE
Q 001311          800 VTDSNPEEAVPCFALSKNDS--YVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---IQI  874 (1102)
Q Consensus       800 ~~~~~~~~~i~~l~~s~d~~--~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~---v~v  874 (1102)
                      +.  .+...+.+++|+|++.  +++++.++.+.+|++....            ..++++| +++++++++.+..   +..
T Consensus       266 ~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~g~~~~~~~~~~~~~~~~~  330 (814)
T 3mkq_A          266 LN--VGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDE------------PTLSLDP-VGKLVWSGGKNAAASDIFT  330 (814)
T ss_dssp             EC--CSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCS------------CCEEECS-SSEEEEECCTTSCTTCEEE
T ss_pred             ee--cCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCC------------ceeEECC-CCCEEEECcccccceeeee
Confidence            11  2678899999999997  5777779999999876432            3567888 8888888776652   211


Q ss_pred             ------EEeeccee----eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCc
Q 001311          875 ------YNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  944 (1102)
Q Consensus       875 ------wd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  944 (1102)
                            |++..+..    ...+..|...+.+++|+|+|++|++++ |+.+.+|++.......             .+.+.
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~~~-------------~~~i~  396 (814)
T 3mkq_A          331 AVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRNKA-------------FGKCQ  396 (814)
T ss_dssp             EECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEEEE-------------EEECS
T ss_pred             eecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccccC-------------CCceE
Confidence                  22233322    234456777899999999999999998 8999999986532211             13678


Q ss_pred             EEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCC---cEEEEEeCCCeEEEEEcCCceeEEE
Q 001311          945 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCR 1020 (1102)
Q Consensus       945 ~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~---~~l~s~s~Dg~I~vwd~~~~~~~~~ 1020 (1102)
                      +++|+|||++++++ .++.|++|+..          .+|...+.+++|+||+   ++|++++.|+.|++||+.+++.+..
T Consensus       397 ~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~  466 (814)
T 3mkq_A          397 DFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRR  466 (814)
T ss_dssp             EEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEE
T ss_pred             EEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEEEE
Confidence            99999999999996 78999999632          2567789999999999   6889999999999999999999988


Q ss_pred             eCCCcccCCCCCCCcccceEEEecCCCCCEEEEE------ecCCcEEEEe
Q 001311         1021 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG------LSDGGVHVFE 1064 (1102)
Q Consensus      1021 ~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~------~~Dg~v~vW~ 1064 (1102)
                      +.       +|    ..  .+.|+| |+++|+++      +.|+.+.+|.
T Consensus       467 ~~-------~~----~~--~v~~s~-dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          467 ID-------VN----AK--DVIWSD-NGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             ES-------SC----EE--EEEECT-TSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             Ee-------cC----CC--EEEEcC-CCCEEEEEEcCcccCCceEEEEEe
Confidence            87       22    11  699999 68999999      5555555554

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.9e-40  Score=375.36  Aligned_cols=307  Identities=16%  Similarity=0.308  Sum_probs=263.7

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      .+.+|.+.|++++|+|++++ +++|+.||+|+|||+.+++...                   .+.+|.+.|.+++|+|+|
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~-l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~  162 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSG  162 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTS
T ss_pred             eecccCCcEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCC
Confidence            35679999999999999995 9999999999999999987765                   478999999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      ++|++|+.|++|+|||+.+++++.   .+.+|...|.+++|+|++.  +|++|+.|++|++||+.++.++..+.+|...|
T Consensus       163 ~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v  237 (410)
T 1vyh_C          163 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  237 (410)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             CEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccE
Confidence            999999999999999999987665   5789999999999999999  79999999999999999999999999999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .++.+  .+++.+|++|+.|++|++||+.+......+..|...|.+++|+|++......... ..........+.+|++|
T Consensus       238 ~~~~~--~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          238 RMVRP--NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             EEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEE
T ss_pred             EEEEE--CCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhc-cccccccCCCCCEEEEE
Confidence            99987  4667899999999999999999998888999999999999999986532111111 11112233457899999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      +.|+.|++||+.++.++..+.+|..  .|.+++|+|++++|++++.||.|++||+.++ +.+..+.              
T Consensus       315 s~D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~--------------  377 (410)
T 1vyh_C          315 SRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN--------------  377 (410)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE--------------
T ss_pred             eCCCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEc--------------
Confidence            9999999999999999999887654  7999999999999999999999999998766 3332221              


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                                  +|..
T Consensus       378 ----------------------------------------------------------------------------~h~~  381 (410)
T 1vyh_C          378 ----------------------------------------------------------------------------AHEH  381 (410)
T ss_dssp             ----------------------------------------------------------------------------CCSS
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        2677


Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeec
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKW  768 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~  768 (1102)
                      .|.+++|+|++.+|++++.|+.|++|++
T Consensus       382 ~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          382 FVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            8999999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.7e-39  Score=357.56  Aligned_cols=290  Identities=19%  Similarity=0.301  Sum_probs=250.9

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      .+.+|.+.|++++|+|||++ |++|+.||+|+|||+.+++.+..                   +..|...|.+++|+|+|
T Consensus        50 ~l~gH~~~v~~~~~s~d~~~-l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~~~s~~~  109 (340)
T 1got_B           50 TLRGHLAKIYAMHWGTDSRL-LLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPSG  109 (340)
T ss_dssp             EECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEEEECTTS
T ss_pred             eecCCCCceEEEEECCCCCE-EEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEEEECCCC
Confidence            35569999999999999995 99999999999999999887763                   67899999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCce-eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      ++||+|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++.   +++++.|++|++||+.+++++..+.+|.+.
T Consensus       110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~  186 (340)
T 1got_B          110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGD  186 (340)
T ss_dssp             SEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence            9999999999999999987642 233446889999999999998875   889999999999999999999999999999


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      |.+++|+  +++.++++|+.|+.|++||++++.....+..|...|.+++|+|+                     +++|++
T Consensus       187 v~~~~~~--~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~---------------------~~~l~s  243 (340)
T 1got_B          187 VMSLSLA--PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN---------------------GNAFAT  243 (340)
T ss_dssp             EEEEEEC--TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTT---------------------SSEEEE
T ss_pred             eEEEEEC--CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCC---------------------CCEEEE
Confidence            9999985  46689999999999999999988777777666665655555555                     458999


Q ss_pred             EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311          580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  659 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1102)
                      ++.||.|++||+.+++.+..+........|.+++|+|++++|++|+.||.|++||+.++ .....+              
T Consensus       244 ~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~--------------  308 (340)
T 1got_B          244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL--------------  308 (340)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEE--------------
T ss_pred             EcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEe--------------
Confidence            99999999999999988888775554457899999999999999999999999998766 222222              


Q ss_pred             CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccc
Q 001311          660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  739 (1102)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  739 (1102)
                                                                                                  .+|.
T Consensus       309 ----------------------------------------------------------------------------~~h~  312 (340)
T 1got_B          309 ----------------------------------------------------------------------------AGHD  312 (340)
T ss_dssp             ----------------------------------------------------------------------------ECCS
T ss_pred             ----------------------------------------------------------------------------ecCC
Confidence                                                                                        1377


Q ss_pred             cceEEEEEccCCceEEEeecCceEEeee
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                      ..|.+++|+|+|.+|++++.|+.|++||
T Consensus       313 ~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          313 NRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            8899999999999999999999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.1e-38  Score=358.32  Aligned_cols=293  Identities=17%  Similarity=0.274  Sum_probs=252.9

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      .+.+|.+.|+|++|+||+++ |++|+.||+|+|||..+++....                   +..|...|.+++|+|+|
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~-l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~~~sp~g  118 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRR-IVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMACAYAPSG  118 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEEEECTTS
T ss_pred             EecCCCCeEEEEEECCCCCE-EEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEEEECCCC
Confidence            35579999999999999995 99999999999999998877663                   56788899999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCce---eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDE---VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~---~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      ++||+|+.|+.+++|++.....   ......+.+|.+.|.+++|+|++.  .|++++.|++|++||+.+++++..+.+|.
T Consensus       119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~  196 (354)
T 2pbi_B          119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHG  196 (354)
T ss_dssp             SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred             CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Confidence            9999999999999999875421   122335778999999999999999  79999999999999999999999999999


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      ..|.+++|++++++.+|++|+.||.|++||++++.....+..|...|.+++|+|++                     ++|
T Consensus       197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~---------------------~~l  255 (354)
T 2pbi_B          197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG---------------------DAF  255 (354)
T ss_dssp             SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEE
T ss_pred             CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC---------------------CEE
Confidence            99999999887778899999999999999999888777777666666665555554                     579


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  657 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  657 (1102)
                      ++++.|++|++||+..++.+..+..+.....+.+++|+|++.+|++++.|+.|++||+.++ ..+..+            
T Consensus       256 ~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l------------  322 (354)
T 2pbi_B          256 ASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSIL------------  322 (354)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE------------
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEE------------
Confidence            9999999999999999888887765554456789999999999999999999999998776 222222            


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311          658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  737 (1102)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  737 (1102)
                                                                                                    .+
T Consensus       323 ------------------------------------------------------------------------------~~  324 (354)
T 2pbi_B          323 ------------------------------------------------------------------------------FG  324 (354)
T ss_dssp             ------------------------------------------------------------------------------CC
T ss_pred             ------------------------------------------------------------------------------EC
Confidence                                                                                          13


Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeee
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                      |...|.+++|+|+|++|++++.|+.|++|+
T Consensus       325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            778899999999999999999999999995

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.8e-39  Score=370.07  Aligned_cols=306  Identities=17%  Similarity=0.313  Sum_probs=259.4

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  527 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd  527 (1102)
                      .+.+|.++|++++|+|++.  +|++|+.|++|+|||+.+++.+..+.+|...|.+++|+  +++.+|++|+.|++|++||
T Consensus       103 ~l~gh~~~V~~~~~~p~~~--~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~--~~~~~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLWD  178 (410)
T ss_dssp             EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC--TTSSEEEEEETTSCCCEEE
T ss_pred             eecccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEc--CCCCEEEEEeCCCeEEEEe
Confidence            4789999999999999999  89999999999999999999999999999999999985  5668999999999999999


Q ss_pred             cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311          528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  607 (1102)
Q Consensus       528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  607 (1102)
                      +.+......+..|...|.+++|+|++                     ++|++++.|+.|++||+.++.++..+.+|..  
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~---------------------~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~--  235 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNG---------------------DHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--  235 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSS---------------------SEEEEEETTSEEEEEETTTCCEEEEEECCSS--
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCC---------------------CEEEEEeCCCeEEEEECCCCcEEEEEeCCCc--
Confidence            99877777776666666655555554                     5799999999999999999999999987644  


Q ss_pred             CcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001311          608 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  687 (1102)
Q Consensus       608 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1102)
                      .|.++.+++++.+|++++.||.|++||+.++ .....+.                                         
T Consensus       236 ~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~-~~~~~~~-----------------------------------------  273 (410)
T 1vyh_C          236 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELR-----------------------------------------  273 (410)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEEC-----------------------------------------
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeEec-----------------------------------------
Confidence            7999999999999999999999999998776 3322221                                         


Q ss_pred             ccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeee
Q 001311          688 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       688 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                                                                       +|...|.+++|+|++.+.......       
T Consensus       274 -------------------------------------------------~h~~~v~~~~~~~~~~~~~~~~~~-------  297 (410)
T 1vyh_C          274 -------------------------------------------------EHRHVVECISWAPESSYSSISEAT-------  297 (410)
T ss_dssp             -------------------------------------------------CCSSCEEEEEECCSCGGGGGGGCC-------
T ss_pred             -------------------------------------------------CCCceEEEEEEcCcccccchhhhc-------
Confidence                                                             266778899999887532110000       


Q ss_pred             ccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC
Q 001311          768 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP  846 (1102)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~  846 (1102)
                                                              .........++.+|++|+ |++|++||+.++.++..+.+|
T Consensus       298 ----------------------------------------~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h  337 (410)
T 1vyh_C          298 ----------------------------------------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  337 (410)
T ss_dssp             ----------------------------------------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ----------------------------------------cccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECC
Confidence                                                    001112234678999999 999999999999999999999


Q ss_pred             CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          847 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      ...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++.+|++|+.|++|+||++
T Consensus       338 ~~~v~~v~~~~-~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          338 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             CCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            99999999999 9999999999999999999999999999999999999999999999999999999999986

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-38  Score=350.18  Aligned_cols=288  Identities=17%  Similarity=0.280  Sum_probs=247.9

Q ss_pred             ccCCCCCCeEEEEEccC----CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311          403 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  478 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spd----g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~  478 (1102)
                      .+.+|.+.|++++|+|+    +++||+|+.|++|+|||+.+++. .....+.+|...|.+++|++++.  ++++++.|++
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~  103 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAH  103 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSE
T ss_pred             ecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCc
Confidence            36799999999999984    67999999999999999988753 23346889999999999999999  8999999999


Q ss_pred             EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311          479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      |++||+.+++++..+..|...+.+++|+  +++++|++++.||.|++|++.++.....+..+...+.+++          
T Consensus       104 i~lWd~~~~~~~~~~~~~~~~~~~~~~s--pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~----------  171 (321)
T 3ow8_A          104 IRLWDLENGKQIKSIDAGPVDAWTLAFS--PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIA----------  171 (321)
T ss_dssp             EEEEETTTTEEEEEEECCTTCCCCEEEC--TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEE----------
T ss_pred             EEEEECCCCCEEEEEeCCCccEEEEEEC--CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEE----------
Confidence            9999999999999999999999999884  5668999999999999999998777666665555555554          


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                                 |+|++++|++++.||.|++||+.+++.+..+..+..  .|.+++|+|++++|++++.||.|++||+.++
T Consensus       172 -----------~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~  238 (321)
T 3ow8_A          172 -----------YSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM--PIRSLTFSPDSQLLVTASDDGYIKIYDVQHA  238 (321)
T ss_dssp             -----------ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred             -----------ECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC--ceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence                       555556899999999999999999999999886644  7999999999999999999999999997654


Q ss_pred             ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311          639 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  718 (1102)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~  718 (1102)
                       .....+                                                                         
T Consensus       239 -~~~~~~-------------------------------------------------------------------------  244 (321)
T 3ow8_A          239 -NLAGTL-------------------------------------------------------------------------  244 (321)
T ss_dssp             -CEEEEE-------------------------------------------------------------------------
T ss_pred             -ceeEEE-------------------------------------------------------------------------
Confidence             111100                                                                         


Q ss_pred             cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311          719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  798 (1102)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  798 (1102)
                                                                                                      
T Consensus       245 --------------------------------------------------------------------------------  244 (321)
T 3ow8_A          245 --------------------------------------------------------------------------------  244 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          799 DVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       799 ~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                          .+|...|.+++|+|++++|++++ |++|++||+.+++++.++.+|...|.+++|+| ++++|++++.||.|+|||.
T Consensus       245 ----~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~  319 (321)
T 3ow8_A          245 ----SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC  319 (321)
T ss_dssp             ----CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred             ----cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence                01677788999999999999998 89999999999999999999999999999999 8999999999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.6e-38  Score=351.49  Aligned_cols=287  Identities=21%  Similarity=0.325  Sum_probs=246.9

Q ss_pred             EeeccccCEEEEEEcCC----CCeeEEEEecCCCcEEEEeCCCCee--eEEeecCCCCeEEEeeeecCCccEEEEEeCCC
Q 001311          448 EIDAHVGGVNDIAFSHP----NKQLCVITCGDDKTIKVWDATNGAK--QYIFEGHEAPVYSVCPHHKENIQFIFSTALDG  521 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d----~~~~~l~s~~~d~~i~vWd~~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg  521 (1102)
                      .+.+|.+.|++++|+++    +.  +|+||+.|++|+|||+.+++.  ...+.+|...|.+++|+  +++.++++++.|+
T Consensus        27 ~~~~H~~~V~~v~~~~~~~~~~~--~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~--~~~~~l~s~s~D~  102 (321)
T 3ow8_A           27 QEQAHDDAIWSVAWGTNKKENSE--TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS--HTLPIAASSSLDA  102 (321)
T ss_dssp             ETTSSSSCEEEEEEC-------C--EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC--SSSSEEEEEETTS
T ss_pred             ecccCCCcEEEEEEecCCCCCCC--EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEEC--CCCCEEEEEeCCC
Confidence            46789999999999985    45  799999999999999988764  45789999999999985  5567999999999


Q ss_pred             eEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc
Q 001311          522 KIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID  601 (1102)
Q Consensus       522 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  601 (1102)
                      +|++||+.+++....+..+...+.++                     +|+|++++|++++.||.|++||+.+++....+.
T Consensus       103 ~i~lWd~~~~~~~~~~~~~~~~~~~~---------------------~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~  161 (321)
T 3ow8_A          103 HIRLWDLENGKQIKSIDAGPVDAWTL---------------------AFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD  161 (321)
T ss_dssp             EEEEEETTTTEEEEEEECCTTCCCCE---------------------EECTTSSEEEEECTTSEEEEEETTTCSEEEEEE
T ss_pred             cEEEEECCCCCEEEEEeCCCccEEEE---------------------EECCCCCEEEEEcCCCcEEEEEcCCCceeEEec
Confidence            99999999877666665555444444                     455555689999999999999999999888887


Q ss_pred             CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccc
Q 001311          602 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLAD  681 (1102)
Q Consensus       602 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  681 (1102)
                      .+..  .+.+++|+|++++|++++.||.|++||+.++ +.+..+.                                   
T Consensus       162 ~~~~--~v~~~~~spdg~~lasg~~dg~i~iwd~~~~-~~~~~~~-----------------------------------  203 (321)
T 3ow8_A          162 TRGK--FILSIAYSPDGKYLASGAIDGIINIFDIATG-KLLHTLE-----------------------------------  203 (321)
T ss_dssp             CSSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEEEC-----------------------------------
T ss_pred             CCCc--eEEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc-----------------------------------
Confidence            6644  6899999999999999999999999998765 2111110                                   


Q ss_pred             ccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCc
Q 001311          682 RAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNA  761 (1102)
Q Consensus       682 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg  761 (1102)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (321)
T 3ow8_A          204 --------------------------------------------------------------------------------  203 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCcee
Q 001311          762 IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM  840 (1102)
Q Consensus       762 ~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~  840 (1102)
                                                                +|...|.+++|+|++++|++++ |+.|++||+.+++..
T Consensus       204 ------------------------------------------~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~  241 (321)
T 3ow8_A          204 ------------------------------------------GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA  241 (321)
T ss_dssp             ------------------------------------------CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE
T ss_pred             ------------------------------------------ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee
Confidence                                                      1666788899999999999998 899999999999999


Q ss_pred             eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          841 ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       841 ~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      ..+.+|...|.+++|+| ++++|++|+.||+|+|||+.+++++..+.+|.+.|++++|+|++++|++++.|++|+|||..
T Consensus       242 ~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          242 GTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            99999999999999999 89999999999999999999999999999999999999999999999999999999999963

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-38  Score=368.10  Aligned_cols=341  Identities=16%  Similarity=0.212  Sum_probs=275.0

Q ss_pred             cCCCCCCeEEEEEccCCC-eEEEEECCCeEEEEEc----cCCce---eeeEEEeec----------cccCEEEEEEcCCC
Q 001311          404 VKDPGVSVNRVIWSPDGS-LFGVAYSRHIVQIYSY----HGGDE---VRQHLEIDA----------HVGGVNDIAFSHPN  465 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~-~las~~~d~~v~vwd~----~~~~~---~~~~~~l~~----------h~~~V~~v~~s~d~  465 (1102)
                      ...|.+.|.+++|+|+|+ +||+|+.|+.|++||+    .+++.   +.....+..          |.+.|++++|+|++
T Consensus        41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  120 (425)
T 1r5m_A           41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG  120 (425)
T ss_dssp             EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred             eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence            345678999999999999 9999999999999999    88772   001112332          68899999999999


Q ss_pred             CeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCe--
Q 001311          466 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW--  543 (1102)
Q Consensus       466 ~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~--  543 (1102)
                      +  +|++++.|+.|++|| .+++.+..+.+|...|.+++|+  +++.+|++++.||.|++||+.++.....+..+...  
T Consensus       121 ~--~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          121 N--SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWN--KDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             S--EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEEC--TTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             C--EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEEC--CCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            9  799999999999999 7888999999999999999985  56689999999999999999988777766655443  


Q ss_pred             -eeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEE
Q 001311          544 -CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA  622 (1102)
Q Consensus       544 -v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  622 (1102)
                       +....+.+++.         .+.++.++++ ..+++++.+|.|++||+.+++.+..+..+.  ..|.+++|+|++++|+
T Consensus       196 ~~~~~~~~~~~~---------~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          196 SINAENHSGDGS---------LGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHH--GPISVLEFNDTNKLLL  263 (425)
T ss_dssp             ----------CC---------CBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCS--SCEEEEEEETTTTEEE
T ss_pred             ceeeccccCCcc---------eeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCC--CceEEEEECCCCCEEE
Confidence             11111111111         2445555554 348899999999999999999888887654  4799999999999999


Q ss_pred             EEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCC
Q 001311          623 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV  702 (1102)
Q Consensus       623 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1102)
                      +++.||.|++||+.++ +....+                                                         
T Consensus       264 ~~~~d~~i~i~d~~~~-~~~~~~---------------------------------------------------------  285 (425)
T 1r5m_A          264 SASDDGTLRIWHGGNG-NSQNCF---------------------------------------------------------  285 (425)
T ss_dssp             EEETTSCEEEECSSSB-SCSEEE---------------------------------------------------------
T ss_pred             EEcCCCEEEEEECCCC-ccceEe---------------------------------------------------------
Confidence            9999999999997654 111000                                                         


Q ss_pred             CccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccc
Q 001311          703 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATAS  782 (1102)
Q Consensus       703 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  782 (1102)
                                                                                                      
T Consensus       286 --------------------------------------------------------------------------------  285 (425)
T 1r5m_A          286 --------------------------------------------------------------------------------  285 (425)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc
Q 001311          783 VAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  861 (1102)
Q Consensus       783 ~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~  861 (1102)
                                          ..|...|.+++|+|++ ++++++ |+.|++||+.+++.+..+..|...|.+++|+| +++
T Consensus       286 --------------------~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~  343 (425)
T 1r5m_A          286 --------------------YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQ  343 (425)
T ss_dssp             --------------------CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSS
T ss_pred             --------------------cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCC
Confidence                                0156678888899988 777777 89999999999999999999999999999999 899


Q ss_pred             EEEEEeCCCcEEEEEeecce--------------------eeeeeccccc--cceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          862 IIAIGMDDSSIQIYNVRVDE--------------------VKSKLKGHSK--RITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       862 ~lasg~~dg~v~vwd~~~~~--------------------~~~~l~~h~~--~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      +|++++.||.|++||+.+++                    .+..+.+|..  .|++++|+|++++|++++.||.|++|++
T Consensus       344 ~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  423 (425)
T 1r5m_A          344 KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI  423 (425)
T ss_dssp             EEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred             EEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence            99999999999999999888                    8899999976  9999999999999999999999999998


Q ss_pred             CC
Q 001311          920 DG  921 (1102)
Q Consensus       920 ~~  921 (1102)
                      ++
T Consensus       424 ~g  425 (425)
T 1r5m_A          424 PG  425 (425)
T ss_dssp             CC
T ss_pred             cC
Confidence            63

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.1e-37  Score=348.76  Aligned_cols=287  Identities=14%  Similarity=0.264  Sum_probs=242.4

Q ss_pred             eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEE
Q 001311          445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  524 (1102)
Q Consensus       445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~  524 (1102)
                      ...++.+|.+.|++++|+||++  +|++|+.|++|++||+.+++.+..+..|...|.+++|+  +++.+|++|+.|+.|+
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~--~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSR--LLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA--PSGNYVACGGLDNICS  122 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEEC--TTSSEEEEEETTCEEE
T ss_pred             hheeecCCCCceEEEEECCCCC--EEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEEC--CCCCEEEEEeCCCeEE
Confidence            3446899999999999999999  89999999999999999999999999999999999985  5668999999999999


Q ss_pred             EEEcCCCCC----eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE
Q 001311          525 AWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI  600 (1102)
Q Consensus       525 ~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  600 (1102)
                      +|++.+...    ...+..|...+.++.|++++                      .+++++.|+.|++||+.+++.+..+
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------------------~l~s~s~d~~i~~wd~~~~~~~~~~  180 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----------------------QIVTSSGDTTCALWDIETGQQTTTF  180 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETT----------------------EEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCC----------------------cEEEEECCCcEEEEECCCCcEEEEE
Confidence            999987542    22344455555555554443                      3899999999999999999999988


Q ss_pred             cCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311          601 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  680 (1102)
Q Consensus       601 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1102)
                      .+|.  ..|.+++|+|+++++++++.||.|++||+.++ .....+                                   
T Consensus       181 ~~h~--~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~-~~~~~~-----------------------------------  222 (340)
T 1got_B          181 TGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQTF-----------------------------------  222 (340)
T ss_dssp             CCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEE-----------------------------------
T ss_pred             cCCC--CceEEEEECCCCCEEEEEeCCCcEEEEECCCC-eeEEEE-----------------------------------
Confidence            8664  47999999999999999999999999998665 111111                                   


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311          681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  760 (1102)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d  760 (1102)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (340)
T 1got_B          223 --------------------------------------------------------------------------------  222 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce
Q 001311          761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  839 (1102)
Q Consensus       761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~  839 (1102)
                                                                .+|...|.+++|+|++++|++++ |++|++||+.+++.
T Consensus       223 ------------------------------------------~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~  260 (340)
T 1got_B          223 ------------------------------------------TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             ------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             ------------------------------------------cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence                                                      01566677888888888888888 78888888888777


Q ss_pred             eeeecC--CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEE
Q 001311          840 MATFMP--PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVW  917 (1102)
Q Consensus       840 ~~~~~~--~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vw  917 (1102)
                      +..+..  +...|++++|+| ++++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+||+++|++++.|++|+||
T Consensus       261 ~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iW  339 (340)
T 1got_B          261 LMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW  339 (340)
T ss_dssp             EEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             EEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEec
Confidence            666643  334799999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             E
Q 001311          918 S  918 (1102)
Q Consensus       918 d  918 (1102)
                      |
T Consensus       340 d  340 (340)
T 1got_B          340 N  340 (340)
T ss_dssp             C
T ss_pred             C
Confidence            6

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=7.9e-39  Score=359.74  Aligned_cols=324  Identities=14%  Similarity=0.173  Sum_probs=232.1

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  427 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  427 (1102)
                      .-..+.+.+++.  ++.++.+.....|++...                       ....|...|++++|||||++||+|+
T Consensus         7 ~~sg~d~g~~~~--~~~~~g~~~~~~w~~p~~-----------------------~p~~H~~~V~~v~fSpDG~~las~s   61 (357)
T 4g56_B            7 HSSGVDLGTENL--YFQSNGSSKGSAWGRPVT-----------------------APACMEVQIGAVRYRRDGALLLAAS   61 (357)
T ss_dssp             ----------------------------------------------------------CCCSEEEEEEECSSSCEEEEEE
T ss_pred             cccCCCCCccce--EEecCCCccccccCCCCC-----------------------CcccccCCEEEEEECCCCCEEEEEc
Confidence            334556666665  344444577888987532                       2457999999999999999999999


Q ss_pred             C------CCeEEEEEccCCceeee-EEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE----EeecC
Q 001311          428 S------RHIVQIYSYHGGDEVRQ-HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY----IFEGH  496 (1102)
Q Consensus       428 ~------d~~v~vwd~~~~~~~~~-~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~----~~~~h  496 (1102)
                      .      |+.|++|+..++..... .....+|...|.+++|+|+++   +++++.||+|+|||+.+++.+.    ...+|
T Consensus        62 ~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~---~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h  138 (357)
T 4g56_B           62 SLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG---ILVASDSGAVELWEILEKESLLVNKFAKYEH  138 (357)
T ss_dssp             CSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE---EEEEETTSCEEEC--------CCCCEEECCC
T ss_pred             CCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC---EEEEECCCEEEEeeccccceeEEEeeccCCC
Confidence            8      77899999887654321 123457999999999999986   6678889999999999887643    44589


Q ss_pred             CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311          497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  576 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  576 (1102)
                      ...|.+++|+  +++.+|++|+.|+.|++||+.++.....+..|...|.+++|++++.                    .+
T Consensus       139 ~~~V~~v~~s--pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~--------------------~~  196 (357)
T 4g56_B          139 DDIVKTLSVF--SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKD--------------------TI  196 (357)
T ss_dssp             SSCEEEEEEC--SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCS--------------------SC
T ss_pred             CCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCC--------------------ce
Confidence            9999999985  5668999999999999999999888888888888888888877764                    45


Q ss_pred             EEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCC-CCEEEEEECCCcEEEEEccCCccceeeccccccccccc
Q 001311          577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD-GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  655 (1102)
Q Consensus       577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  655 (1102)
                      +++++.|+.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+.++ +....+.         
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~---------  266 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSA---------  266 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEEC---------
T ss_pred             eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC-cEeEEEe---------
Confidence            89999999999999999988877766555667899999997 578999999999999998765 2211110         


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311          656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  735 (1102)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  735 (1102)
                                                                                                      
T Consensus       267 --------------------------------------------------------------------------------  266 (357)
T 4g56_B          267 --------------------------------------------------------------------------------  266 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                                                                                          +|...|++++|+
T Consensus       267 --------------------------------------------------------------------~~~~~v~~l~~s  278 (357)
T 4g56_B          267 --------------------------------------------------------------------VHSQNITGLAYS  278 (357)
T ss_dssp             --------------------------------------------------------------------CCSSCEEEEEEC
T ss_pred             --------------------------------------------------------------------ccceeEEEEEEc
Confidence                                                                                155667788888


Q ss_pred             cCC-CeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          816 KND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       816 ~d~-~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                      |++ ++|++++ |++|+|||++++++++.+ +|...|++++|+|.++++|++|+.||+|++|++.+.
T Consensus       279 p~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          279 YHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            876 4688888 899999999988777655 799999999999877999999999999999999764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.5e-37  Score=343.94  Aligned_cols=301  Identities=19%  Similarity=0.254  Sum_probs=243.5

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +.+|.+.|++++|+|++..+|++|+.|++|++||+.+.......              ....+.+|...|.+++|+|||+
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s~dg~   78 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLTADGA   78 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEECTTSS
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEECCCCC
Confidence            44699999999999987546999999999999998643221111              1114789999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  501 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~  501 (1102)
                      +|++|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|++.  +|++|+.|++|++||++ ++++..+.+|...|.
T Consensus        79 ~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~  152 (319)
T 3frx_A           79 YALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS  152 (319)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred             EEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence            99999999999999999998655   5889999999999999999  79999999999999985 677888999999999


Q ss_pred             EEeeeecC----CccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          502 SVCPHHKE----NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       502 ~v~~~~~~----~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      ++.|.+..    ++.++++++.|+.|++||+.+......+..|...|.+++|+|+                     +++|
T Consensus       153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~---------------------g~~l  211 (319)
T 3frx_A          153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD---------------------GTLI  211 (319)
T ss_dssp             EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT---------------------SSEE
T ss_pred             EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC---------------------CCEE
Confidence            99986532    4558999999999999999887666666666655555555554                     4589


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  657 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  657 (1102)
                      ++++.||.|++||+.+++.+..+..+.   .|.+++|+|++.+|++++.+ .+++|++... ..+..+..+...      
T Consensus       212 ~s~~~dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~~------  280 (319)
T 3frx_A          212 ASAGKDGEIMLWNLAAKKAMYTLSAQD---EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFAG------  280 (319)
T ss_dssp             EEEETTCEEEEEETTTTEEEEEEECCS---CEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCTT------
T ss_pred             EEEeCCCeEEEEECCCCcEEEEecCCC---cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCccccc------
Confidence            999999999999999999998887543   59999999999999988764 5999998765 333222211000      


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311          658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  737 (1102)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  737 (1102)
                                                                                                  ....
T Consensus       281 ----------------------------------------------------------------------------~~~~  284 (319)
T 3frx_A          281 ----------------------------------------------------------------------------YSKA  284 (319)
T ss_dssp             ----------------------------------------------------------------------------CCGG
T ss_pred             ----------------------------------------------------------------------------cccC
Confidence                                                                                        0012


Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQR  770 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~  770 (1102)
                      +...+.+++|+|+|++|++++.|+.|++|++.+
T Consensus       285 ~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             GCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             cCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence            556789999999999999999999999999743

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.3e-37  Score=340.00  Aligned_cols=254  Identities=21%  Similarity=0.348  Sum_probs=217.5

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +.+|.+.|++++|+|+|++ |++|+.||+|+|||+.+++.+..                   +.+|...|.+++|+|+++
T Consensus         9 ~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~~~~~~   68 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKFIARKN   68 (304)
T ss_dssp             EEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEEEGGGT
T ss_pred             ecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEEeCCCC
Confidence            3459999999999999996 99999999999999999887763                   678999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCe
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV  500 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v  500 (1102)
                      +|++|+.|++|++||+.+++.+.   .+.+|.+.|.+++|+|+++  +|++|+.|++|++||++++ .....+.+|...|
T Consensus        69 ~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v  143 (304)
T 2ynn_A           69 WIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFV  143 (304)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCE
T ss_pred             EEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcE
Confidence            99999999999999999988665   5889999999999999999  7999999999999999987 5567889999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC-CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      .+++|++. ++.+|++|+.|++|++||+........+.. +...+..+.+.+.                   +++.+|++
T Consensus       144 ~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-------------------~~~~~l~s  203 (304)
T 2ynn_A          144 MCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPL-------------------PDKPYMIT  203 (304)
T ss_dssp             EEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCS-------------------TTCCEEEE
T ss_pred             EEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEc-------------------CCCCEEEE
Confidence            99999652 457999999999999999987655444332 2233444433331                   25578999


Q ss_pred             EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcccee
Q 001311          580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLR  643 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~  643 (1102)
                      ++.|+.|++||+.+++++..+.+|..  .|.+++|+|++.+|++++.||+|++||..++ +..+
T Consensus       204 ~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~  264 (304)
T 2ynn_A          204 ASDDLTIKIWDYQTKSCVATLEGHMS--NVSFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEK  264 (304)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSEEEEEETTSCEEEEETTTC-CEEE
T ss_pred             EcCCCeEEEEeCCCCccceeeCCCCC--CEEEEEECCCCCEEEEEcCCCeEEEEECCCC-ceee
Confidence            99999999999999999999987754  7999999999999999999999999998877 4433

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-38  Score=357.39  Aligned_cols=318  Identities=15%  Similarity=0.201  Sum_probs=232.1

Q ss_pred             cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccccc
Q 001311          705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA  784 (1102)
Q Consensus       705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  784 (1102)
                      ++.+..+.....|+++....           ..|...|.+++|+|||++|++++.|. +++||.               .
T Consensus        19 ~~~~~g~~~~~~w~~p~~~p-----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd~---------------~   71 (357)
T 4g56_B           19 YFQSNGSSKGSAWGRPVTAP-----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWGG---------------S   71 (357)
T ss_dssp             --------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCCE---------------E
T ss_pred             EEecCCCccccccCCCCCCc-----------ccccCCEEEEEECCCCCEEEEEcCCC-CccccC---------------e
Confidence            34445557778888763211           24889999999999999999999853 355542               2


Q ss_pred             ceeccCCCccccccc-cCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceee----eecCCCCCeeEEEEecCC
Q 001311          785 PQLWQPPSGIMMTND-VTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA----TFMPPPPAATFLAFHPQD  859 (1102)
Q Consensus       785 ~~~w~~~~~~~~~~~-~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~----~~~~~~~~i~~l~~sp~d  859 (1102)
                      +.+|+..++...... ....+|...|.+++|+|++++++++.||+|+|||+.+++...    ...+|...|++++|+| +
T Consensus        72 v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-d  150 (357)
T 4g56_B           72 IWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-D  150 (357)
T ss_dssp             EEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-S
T ss_pred             EEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-C
Confidence            344554444322111 111237888999999999987776669999999998876543    3457999999999999 9


Q ss_pred             CcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC
Q 001311          860 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP  938 (1102)
Q Consensus       860 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  938 (1102)
                      +++|++|+.||.|++||+.+++++..+.+|...|++++|++++. ++++++.|++|++||+.+++......   ...+  
T Consensus       151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~--  225 (357)
T 4g56_B          151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCAS--  225 (357)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTC--
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---eccc--
Confidence            99999999999999999999999999999999999999999875 78999999999999998866432211   1111  


Q ss_pred             CCCCCcEEEEccCC-cEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCC-cEEEEEeCCCeEEEEEcCCc
Q 001311          939 TAQSDTRVQFHQDQ-IHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       939 ~~~~v~~~~~spdg-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                       ...+.+++|+|++ .+|+++ .|+.|++||+.+++.+..+.  +|...|++++|+|++ ++||+|+.|++|+|||+.++
T Consensus       226 -~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~  302 (357)
T 4g56_B          226 -DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSA--VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS  302 (357)
T ss_dssp             -CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEEC--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC
T ss_pred             -cccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEe--ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC
Confidence             2468899999985 677775 78999999999999888776  789999999999987 57999999999999999999


Q ss_pred             eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1016 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1016 ~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +++..+        +|... |.  +++|+|.|+.+|++++.||+|++|++.+..
T Consensus       303 ~~~~~~--------~H~~~-V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          303 EVFRDL--------SHRDF-VT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             EEEEEC--------CCSSC-EE--EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             cEeEEC--------CCCCC-EE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            887654        24333 66  899999888999999999999999997654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=346.86  Aligned_cols=208  Identities=16%  Similarity=0.244  Sum_probs=173.8

Q ss_pred             ccCCCCC-CeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          403 LVKDPGV-SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       403 ~~~~h~~-~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                      .+.+|.+ .|++++|+|||++||+|+.|++|+|||+.++..........+|...|.+++|+|+++  +|++|+.|++|++
T Consensus        10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~--~l~s~s~D~~v~i   87 (345)
T 3fm0_A           10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGN--YLASASFDATTCI   87 (345)
T ss_dssp             EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred             eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCC--EEEEEECCCcEEE
Confidence            4778887 999999999999999999999999999998865443334578999999999999999  8999999999999


Q ss_pred             EeCCCC--eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe---eeecCCCCeeeEEEEccCCcee
Q 001311          482 WDATNG--AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR---VDYEAPGRWCTTMAYSADGTRT  556 (1102)
Q Consensus       482 Wd~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~~~~~~  556 (1102)
                      ||+.++  +++..+.+|...|.+++|+  +++++|++|+.|++|++||++.....   ..+..|..              
T Consensus        88 w~~~~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~--------------  151 (345)
T 3fm0_A           88 WKKNQDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ--------------  151 (345)
T ss_dssp             EEECCC-EEEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCS--------------
T ss_pred             EEccCCCeEEEEEccCCCCCceEEEEe--CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCC--------------
Confidence            998876  4678899999999999985  46689999999999999999875432   22333333              


Q ss_pred             eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceE--EEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001311          557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL--TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  634 (1102)
Q Consensus       557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  634 (1102)
                             .+.+++|+|++++|++++.|+.|++||..++...  ..+.+|  ...|.+++|+|++++|++++.||+|++|+
T Consensus       152 -------~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          152 -------DVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             -------CEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             -------CeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEec
Confidence                   4555666666678999999999999999887644  455544  55899999999999999999999999998


Q ss_pred             ccC
Q 001311          635 TSD  637 (1102)
Q Consensus       635 ~~~  637 (1102)
                      ...
T Consensus       223 ~~~  225 (345)
T 3fm0_A          223 QYL  225 (345)
T ss_dssp             EEC
T ss_pred             ccc
Confidence            643

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.5e-37  Score=337.85  Aligned_cols=214  Identities=19%  Similarity=0.294  Sum_probs=183.8

Q ss_pred             ccCCCCCCeEEEEEccCC-CeEEEEECCCeEEEEEccCCce--eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311          403 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  479 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg-~~las~~~d~~v~vwd~~~~~~--~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i  479 (1102)
                      .+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+...  -.....+.+|...|.+++|+|+++  +|++|+.|++|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence            588999999999999965 8999999999999999975432  223456889999999999999999  89999999999


Q ss_pred             EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      ++||+.+++++..+.+|...|.+++|+  +++.+|++|+.|++|++||++. .....+..|...+.++.+.|.+.     
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~-----  161 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDID--KKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEK-----  161 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEEC--TTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-------
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCC-----
Confidence            999999999999999999999999985  5668999999999999999964 55666777777888888877653     


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                                ..+++..+++++.|+.|++||+.+++....+.+|..  .|.+++|+|++++|++++.||.|++||+.++
T Consensus       162 ----------~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~  228 (319)
T 3frx_A          162 ----------ADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS--NINTLTASPDGTLIASAGKDGEIMLWNLAAK  228 (319)
T ss_dssp             --------------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS--CEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ----------CCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence                      123456799999999999999999998888876644  7999999999999999999999999998765

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.6e-37  Score=338.41  Aligned_cols=289  Identities=19%  Similarity=0.265  Sum_probs=244.7

Q ss_pred             EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEE
Q 001311          447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  526 (1102)
Q Consensus       447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~w  526 (1102)
                      .++.+|.+.|.+++|+|+++  +|++++.||+|++||+.++..+..+.+|..+|.+++|++  ++++|++|+.|++|++|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA--RKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEG--GGTEEEEEETTSEEEEE
T ss_pred             EeecCCCCceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeC--CCCEEEEECCCCEEEEE
Confidence            46889999999999999999  899999999999999999999999999999999999864  55799999999999999


Q ss_pred             EcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEEcCCCC
Q 001311          527 LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGG  605 (1102)
Q Consensus       527 d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~  605 (1102)
                      |+.+++....+..|...|.+++|+|++                     ++|++++.|++|++||+.++. ....+.+|. 
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~---------------------~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~-  140 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTK---------------------PYVLSGSDDLTVKLWNWENNWALEQTFEGHE-  140 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSS---------------------SEEEEEETTSCEEEEEGGGTTEEEEEECCCC-
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCC---------------------CEEEEECCCCeEEEEECCCCcchhhhhcccC-
Confidence            999988877777777666666665555                     579999999999999998874 455666554 


Q ss_pred             CCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccc
Q 001311          606 LPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  684 (1102)
Q Consensus       606 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1102)
                       ..|.+++|+| ++.+|++|+.|++|++||+.++..... +.                                      
T Consensus       141 -~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~-~~--------------------------------------  180 (304)
T 2ynn_A          141 -HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT-LT--------------------------------------  180 (304)
T ss_dssp             -SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE-EE--------------------------------------
T ss_pred             -CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce-ec--------------------------------------
Confidence             4799999999 689999999999999999765411000 00                                      


Q ss_pred             cccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEE
Q 001311          685 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  764 (1102)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~  764 (1102)
                                                                                                      
T Consensus       181 --------------------------------------------------------------------------------  180 (304)
T 2ynn_A          181 --------------------------------------------------------------------------------  180 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec--CCCeEEEEe-CCeEEEEEcCCCceee
Q 001311          765 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMA  841 (1102)
Q Consensus       765 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~--d~~~las~s-dg~I~iwd~~~~~~~~  841 (1102)
                                                            .++...+..++++|  ++.+|++++ |++|++||+.+++++.
T Consensus       181 --------------------------------------~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~  222 (304)
T 2ynn_A          181 --------------------------------------TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA  222 (304)
T ss_dssp             --------------------------------------CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE
T ss_pred             --------------------------------------cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce
Confidence                                                  00334455666654  677899998 9999999999999999


Q ss_pred             eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCC--EEEEEcCCCcEEEEEc
Q 001311          842 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALN--VLVSSGADSQLCVWSS  919 (1102)
Q Consensus       842 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~--~l~s~s~Dg~i~vwd~  919 (1102)
                      ++.+|...|.+++|+| ++.+|++|+.||.|++||+.+++++..+..|...+++++|+|++.  ++++++.|| +.+|++
T Consensus       223 ~~~~h~~~v~~~~~~p-~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g-~~~~~~  300 (304)
T 2ynn_A          223 TLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG-FTVLSL  300 (304)
T ss_dssp             EEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTE-EEEEEC
T ss_pred             eeCCCCCCEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCc-eEEEEe
Confidence            9999999999999999 899999999999999999999999999999999999999999875  578887666 888887


Q ss_pred             CC
Q 001311          920 DG  921 (1102)
Q Consensus       920 ~~  921 (1102)
                      ..
T Consensus       301 ~~  302 (304)
T 2ynn_A          301 GN  302 (304)
T ss_dssp             C-
T ss_pred             cc
Confidence            65

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=5.4e-38  Score=356.93  Aligned_cols=298  Identities=13%  Similarity=0.227  Sum_probs=244.1

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+.+|.+.|++++|+|++++||+|+.|++|+|||+.+++...   .+.+|...|.+++|+|+++  +|++|+.|+.|++|
T Consensus        61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw  135 (380)
T 3iz6_a           61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF  135 (380)
T ss_dssp             EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred             cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence            488999999999999999999999999999999999987654   5788999999999999999  89999999999999


Q ss_pred             eCCCCe-------eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee-----cCCCCeeeEEEEc
Q 001311          483 DATNGA-------KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-----EAPGRWCTTMAYS  550 (1102)
Q Consensus       483 d~~~~~-------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s  550 (1102)
                      |+.+..       ....+.+|.+.|.++.|.+.. +..|++|+.|++|++||+.++.....+     ..|..        
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~--------  206 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTA--------  206 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCS--------
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCcc--------
Confidence            987542       345688999999999986543 357999999999999999987766544     22333        


Q ss_pred             cCCceeeeccccCceeEEEEcC-CCCEEEEEeCCCeEEEEECC-CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001311          551 ADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  628 (1102)
Q Consensus       551 ~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  628 (1102)
                                   .+.++.+++ ++++|++|+.|+.|++||++ .++.+..+.+|.  ..|.+++|+|++++|++++.||
T Consensus       207 -------------~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~l~s~s~D~  271 (380)
T 3iz6_a          207 -------------DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE--GDINSVKFFPDGQRFGTGSDDG  271 (380)
T ss_dssp             -------------CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS--SCCCEEEECTTSSEEEEECSSS
T ss_pred             -------------CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC--CCeEEEEEecCCCeEEEEcCCC
Confidence                         444555544 55789999999999999997 456777777664  4799999999999999999999


Q ss_pred             cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccc
Q 001311          629 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  708 (1102)
Q Consensus       629 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  708 (1102)
                      +|++||+.++ ..+..+..+..                                                          
T Consensus       272 ~i~lwd~~~~-~~~~~~~~~~~----------------------------------------------------------  292 (380)
T 3iz6_a          272 TCRLFDMRTG-HQLQVYNREPD----------------------------------------------------------  292 (380)
T ss_dssp             CEEEEETTTT-EEEEEECCCCS----------------------------------------------------------
T ss_pred             eEEEEECCCC-cEEEEeccccc----------------------------------------------------------
Confidence            9999999877 22222211000                                                          


Q ss_pred             cCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceec
Q 001311          709 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLW  788 (1102)
Q Consensus       709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w  788 (1102)
                                                                .                                     
T Consensus       293 ------------------------------------------~-------------------------------------  293 (380)
T 3iz6_a          293 ------------------------------------------R-------------------------------------  293 (380)
T ss_dssp             ------------------------------------------S-------------------------------------
T ss_pred             ------------------------------------------c-------------------------------------
Confidence                                                      0                                     


Q ss_pred             cCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeee----cCCCCCeeEEEEecCCCcEE
Q 001311          789 QPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF----MPPPPAATFLAFHPQDNNII  863 (1102)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~----~~~~~~i~~l~~sp~d~~~l  863 (1102)
                                   ...+...+.+++|+|+|++|++|+ ||.|++||+.+++.+..+    .+|.+.|++++|+| ++++|
T Consensus       294 -------------~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l  359 (380)
T 3iz6_a          294 -------------NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSAL  359 (380)
T ss_dssp             -------------SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEE
T ss_pred             -------------cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEE
Confidence                         000334578899999999999998 899999999888887776    67999999999999 99999


Q ss_pred             EEEeCCCcEEEEEeecce
Q 001311          864 AIGMDDSSIQIYNVRVDE  881 (1102)
Q Consensus       864 asg~~dg~v~vwd~~~~~  881 (1102)
                      ++|+.||.|+||++...+
T Consensus       360 ~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          360 CTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECTTSCEEEEECCSSS
T ss_pred             EEeeCCCCEEEEecCCCc
Confidence            999999999999987643

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=6.6e-38  Score=356.20  Aligned_cols=300  Identities=18%  Similarity=0.288  Sum_probs=248.2

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      ..+.+|.+.|++++|+|+|++ |++|+.|++|+|||+.+++...                   .+.+|...|.+++|+|+
T Consensus        60 ~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~s~~  119 (380)
T 3iz6_a           60 RTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAFAPN  119 (380)
T ss_dssp             EEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEECTT
T ss_pred             ecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEECCC
Confidence            335569999999999999996 9999999999999999998776                   37789999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe--
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--  493 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~--  493 (1102)
                      |++||+|+.|+.|+|||+.+...    ......+.+|.+.|.++.|+|++.. .|++|+.|++|++||+.+++.+..+  
T Consensus       120 g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~  198 (380)
T 3iz6_a          120 GQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGS  198 (380)
T ss_dssp             SSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred             CCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeec
Confidence            99999999999999999976421    1122347899999999999998654 6999999999999999999999887  


Q ss_pred             ---ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC-CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          494 ---EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       494 ---~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                         .+|...|.+++|++ .++.+|++|+.|++|++||++. ......+.+|...|.+++|+|+                 
T Consensus       199 ~~~~~h~~~v~~~~~~~-~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~-----------------  260 (380)
T 3iz6_a          199 EFPSGHTADVLSLSINS-LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD-----------------  260 (380)
T ss_dssp             CSSSSCCSCEEEEEECS-SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT-----------------
T ss_pred             ccCCCCccCeEEEEeec-CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC-----------------
Confidence               68999999999854 3568999999999999999984 3455556666655555555554                 


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC-----CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311          570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-----LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  644 (1102)
Q Consensus       570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  644 (1102)
                          +++|++++.|++|++||+.+++.+..+..+..     ...|.+++|+|+|++|++|+.||.|++||..++ +....
T Consensus       261 ----~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~-~~~~~  335 (380)
T 3iz6_a          261 ----GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA-EMVLN  335 (380)
T ss_dssp             ----SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTC-CEEEE
T ss_pred             ----CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCC-ceEEE
Confidence                45899999999999999999999888765432     234889999999999999999999999998766 22222


Q ss_pred             cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCC
Q 001311          645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE  724 (1102)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~  724 (1102)
                      +..                                                                             
T Consensus       336 ~~~-----------------------------------------------------------------------------  338 (380)
T 3iz6_a          336 LGT-----------------------------------------------------------------------------  338 (380)
T ss_dssp             ECC-----------------------------------------------------------------------------
T ss_pred             Eec-----------------------------------------------------------------------------
Confidence            110                                                                             


Q ss_pred             CCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeecc
Q 001311          725 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQ  769 (1102)
Q Consensus       725 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~  769 (1102)
                               ...+|...|.+++|+|+|++|++++.|+.|++|++.
T Consensus       339 ---------~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          339 ---------LQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             ---------SCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             ---------ccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence                     002378899999999999999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-39  Score=370.66  Aligned_cols=331  Identities=13%  Similarity=0.174  Sum_probs=269.2

Q ss_pred             CCeEEEEEccCCC-eEEEE----------ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311          409 VSVNRVIWSPDGS-LFGVA----------YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  477 (1102)
Q Consensus       409 ~~V~~l~~spdg~-~las~----------~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~  477 (1102)
                      ..|.+++|+|+|+ +||+|          +.|+.|+|||+.+++...... ...|...|.+++|+|+++  +|++++.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~--~l~~~~~dg   89 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA-SLQVDSKFNDLDWSHNNK--IIAGALDNG   89 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC-CCCCSSCEEEEEECSSSS--CEEEEESSS
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE-EEecCCceEEEEECCCCC--eEEEEccCC
Confidence            4688999999997 99999          899999999999876332222 236899999999999999  799999999


Q ss_pred             cEEEEeCCC----CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCC------Ceeee---cCCCCee
Q 001311          478 TIKVWDATN----GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLG------SRVDY---EAPGRWC  544 (1102)
Q Consensus       478 ~i~vWd~~~----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~------~~~~~---~~~~~~v  544 (1102)
                      .|++||+.+    .+.+..+.+|...|.+++|+++ ++.+|++++.||.|++||+.+..      ....+   ..+...+
T Consensus        90 ~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           90 SLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             CEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred             eEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence            999999988    4588899999999999999654 25799999999999999998865      22221   2334444


Q ss_pred             eEEEEccCCceeeeccccCceeEEEEcCC-CCEEEEEeCCCeEEEEECCCcceEEEEcCCCC----CCCcCeEEEcCCC-
Q 001311          545 TTMAYSADGTRTYQGFRKRSLGVVQFDTT-KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNKDG-  618 (1102)
Q Consensus       545 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~s~~~-  618 (1102)
                                           .+++|+|+ +.+|++++.|+.|++||+.+++.+..+..+..    ...+.+++|+|++ 
T Consensus       169 ---------------------~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  227 (416)
T 2pm9_A          169 ---------------------ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS  227 (416)
T ss_dssp             ---------------------CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCT
T ss_pred             ---------------------eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCC
Confidence                                 44555555 46899999999999999999999988876531    3479999999997 


Q ss_pred             CEEEEEECCC---cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCC
Q 001311          619 CLLAVSTNDN---GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGD  695 (1102)
Q Consensus       619 ~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  695 (1102)
                      .++++++.|+   .|++||+.++......+                                                  
T Consensus       228 ~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~--------------------------------------------------  257 (416)
T 2pm9_A          228 TRVATATGSDNDPSILIWDLRNANTPLQTL--------------------------------------------------  257 (416)
T ss_dssp             TEEEEEECCSSSCCCCEEETTSTTSCSBCC--------------------------------------------------
T ss_pred             CEEEEEECCCCCceEEEEeCCCCCCCcEEe--------------------------------------------------
Confidence            6899999998   99999986641111000                                                  


Q ss_pred             ccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCC
Q 001311          696 VRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNS  775 (1102)
Q Consensus       696 ~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  775 (1102)
                                                                                                      
T Consensus       258 --------------------------------------------------------------------------------  257 (416)
T 2pm9_A          258 --------------------------------------------------------------------------------  257 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEE
Q 001311          776 SGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFL  853 (1102)
Q Consensus       776 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l  853 (1102)
                                               . .+|...|.+++|+| ++++|++++ |+.|++||+.+++.+..+.+|...|.++
T Consensus       258 -------------------------~-~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~  311 (416)
T 2pm9_A          258 -------------------------N-QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKT  311 (416)
T ss_dssp             -------------------------C-SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCE
T ss_pred             -------------------------e-cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEE
Confidence                                     0 01667788888888 888888888 8999999999999999999999999999


Q ss_pred             EEecCCC-cEEEEEeCCCcEEEEEeecceeeeeec-----------------------------------cccccceeEE
Q 001311          854 AFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKLK-----------------------------------GHSKRITGLA  897 (1102)
Q Consensus       854 ~~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l~-----------------------------------~h~~~V~~l~  897 (1102)
                      +|+| ++ .+|++++.||.|++||+.+++......                                   .|...+.+++
T Consensus       312 ~~s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (416)
T 2pm9_A          312 KFAP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAH  390 (416)
T ss_dssp             EECT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCE
T ss_pred             EECC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceE
Confidence            9999 66 899999999999999998765433221                                   1677888999


Q ss_pred             EecCCCEEEEEcCCCcEEEEEcCC
Q 001311          898 FSHALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       898 ~s~d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                      |+|||++|++++.|++|+||++.+
T Consensus       391 ~s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          391 WAFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             EETTTEEECBCTTSSCBCCBCCCC
T ss_pred             EeeCCeEEEEeCCCCeEEEEEecc
Confidence            999999999999999999999986

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-37  Score=356.72  Aligned_cols=358  Identities=11%  Similarity=0.149  Sum_probs=268.5

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeC----CCCee------EEeeeeeeeccCCCCccccccccCCCCCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEV----GSRER------LVLRNFKVWDLGACSMPLQAALVKDPGVS  410 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~----~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  410 (1102)
                      ....|.+.|++++|+|+|+.+|++|+.||.|+|||+    .+++.      .......         ........+|.+.
T Consensus        40 ~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~  110 (425)
T 1r5m_A           40 KEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHP---------FALSASSGKTTNQ  110 (425)
T ss_dssp             EEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECC---------CCCC------CBC
T ss_pred             eeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccc---------ccccccccCCCCc
Confidence            344577999999999999933999999999999999    88773      2210000         0000012347889


Q ss_pred             eEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee
Q 001311          411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  490 (1102)
Q Consensus       411 V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~  490 (1102)
                      |.+++|+|++++|++|+.||.|++|| .+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++.+
T Consensus       111 v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~  184 (425)
T 1r5m_A          111 VTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVM  184 (425)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEE
T ss_pred             eEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEE
Confidence            99999999999999999999999999 4444443   4788999999999999999  7999999999999999999999


Q ss_pred             EEeecCCCC---------------eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce
Q 001311          491 YIFEGHEAP---------------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  555 (1102)
Q Consensus       491 ~~~~~h~~~---------------v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  555 (1102)
                      ..+..+...               +.+++|++.   ..+++++.||.|++||+.+......+..+...+.+++|+++   
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~---  258 (425)
T 1r5m_A          185 QHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDT---  258 (425)
T ss_dssp             EEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETT---
T ss_pred             EEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCC---
Confidence            999888777               888888653   46999999999999999988777666666665555555554   


Q ss_pred             eeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          556 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                                        +++|++++.|+.|++||+.+++.+..+..+.  ..|.+++|+|++ ++++++.||.|++||+
T Consensus       259 ------------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~-~l~~~~~d~~i~i~d~  317 (425)
T 1r5m_A          259 ------------------NKLLLSASDDGTLRIWHGGNGNSQNCFYGHS--QSIVSASWVGDD-KVISCSMDGSVRLWSL  317 (425)
T ss_dssp             ------------------TTEEEEEETTSCEEEECSSSBSCSEEECCCS--SCEEEEEEETTT-EEEEEETTSEEEEEET
T ss_pred             ------------------CCEEEEEcCCCEEEEEECCCCccceEecCCC--ccEEEEEECCCC-EEEEEeCCCcEEEEEC
Confidence                              4579999999999999999999988887654  479999999999 9999999999999998


Q ss_pred             cCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccc
Q 001311          636 SDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSK  715 (1102)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  715 (1102)
                      .++ ..+..+.                                                                     
T Consensus       318 ~~~-~~~~~~~---------------------------------------------------------------------  327 (425)
T 1r5m_A          318 KQN-TLLALSI---------------------------------------------------------------------  327 (425)
T ss_dssp             TTT-EEEEEEE---------------------------------------------------------------------
T ss_pred             CCC-cEeEecc---------------------------------------------------------------------
Confidence            776 3222221                                                                     


Q ss_pred             eEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccc
Q 001311          716 VWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIM  795 (1102)
Q Consensus       716 ~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~  795 (1102)
                                           .|...|.+++|+|+++++++++.||.|++|++.....                      
T Consensus       328 ---------------------~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~----------------------  364 (425)
T 1r5m_A          328 ---------------------VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNS----------------------  364 (425)
T ss_dssp             ---------------------CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC----------------------
T ss_pred             ---------------------cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCcc----------------------
Confidence                                 1456788888888888888888888888888632110                      


Q ss_pred             cccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCC--CeeEEEEecCCCcEEEEEeCCCcEE
Q 001311          796 MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPP--AATFLAFHPQDNNIIAIGMDDSSIQ  873 (1102)
Q Consensus       796 ~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~dg~v~  873 (1102)
                      ..            ..+         ....++.   +.......+..+.+|..  .|++++|+| ++++|++++.||.|+
T Consensus       365 ~~------------~~~---------~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~  419 (425)
T 1r5m_A          365 KS------------RSL---------YGNRDGI---LNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGS  419 (425)
T ss_dssp             --------------------------------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCE
T ss_pred             ce------------eee---------ecccccc---cCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEE
Confidence            00            000         0001222   22233456788888876  999999999 899999999999999


Q ss_pred             EEEee
Q 001311          874 IYNVR  878 (1102)
Q Consensus       874 vwd~~  878 (1102)
                      +||+.
T Consensus       420 iw~~~  424 (425)
T 1r5m_A          420 VVAIP  424 (425)
T ss_dssp             EEECC
T ss_pred             EEeec
Confidence            99975

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.7e-38  Score=348.35  Aligned_cols=295  Identities=15%  Similarity=0.156  Sum_probs=230.4

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcc-ccccccCCCCCCCCeeEEEEec
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGI-MMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~-~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                      +...|.+++|+|||++|++++ |+++++|+....               +|+..... ..........+...|.+++|++
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            567799999999999777665 778899975221               12111100 0000000011567799999999


Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeee----ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccc
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMAT----FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK  891 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~----~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~  891 (1102)
                      ++. |++++ ||+|+|||+.+++.+..    +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus        93 d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~  170 (344)
T 4gqb_B           93 ERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA  170 (344)
T ss_dssp             TTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred             CCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence            964 55666 99999999998876544    458999999999999 999999999999999999999999999999999


Q ss_pred             cceeEEEecCC-CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEc
Q 001311          892 RITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFET  968 (1102)
Q Consensus       892 ~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~-~d~~i~iwd~  968 (1102)
                      .|++++|++++ .+|++++.|++|++||+.+++.......   ..+   ...+.+++|+|+ +++++++ .|+.|++||+
T Consensus       171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~---~~~---~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~  244 (344)
T 4gqb_B          171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC---SAP---GYLPTSLAWHPQQSEVFVFGDENGTVSLVDT  244 (344)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----------CCCEEEEEECSSCTTEEEEEETTSEEEEEES
T ss_pred             ceEEEEecCCCCCceeeeccccccccccccccceeeeeec---cee---eccceeeeecCCCCcceEEeccCCcEEEEEC
Confidence            99999999998 4789999999999999998764321111   111   135789999995 5677775 7899999999


Q ss_pred             CCceEeeeeccCCCCCCeeEEEEcCCC-cEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311          969 TKLECVKQWVPRESSAPITHATFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus       969 ~~~~~~~~~~~~~h~~~v~~l~~spd~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
                      .+++++..+.  +|...|++++|+||+ ++|++|+.|++|+|||+.+++++. +.       +|... |.  +++|+|++
T Consensus       245 ~~~~~~~~~~--~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------~H~~~-V~--~v~~sp~~  311 (344)
T 4gqb_B          245 KSTSCVLSSA--VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------AHRDF-VR--DATWSPLN  311 (344)
T ss_dssp             CC--CCEEEE--CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------CCSSC-EE--EEEECSSS
T ss_pred             CCCcEEEEEc--CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------CCCCC-EE--EEEEeCCC
Confidence            9999988876  889999999999998 579999999999999999998753 33       45444 66  99999976


Q ss_pred             CCEEEEEecCCcEEEEeccCCC
Q 001311         1048 PNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1048 ~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      ..+|++++.||+|++|++.+..
T Consensus       312 ~~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          312 HSLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             TTEEEEEETTSCEEEEECCC--
T ss_pred             CeEEEEEcCCCeEEEEECCCCC
Confidence            6678899999999999997744

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=9.4e-38  Score=347.61  Aligned_cols=293  Identities=13%  Similarity=0.124  Sum_probs=231.6

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCC--------ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  475 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~  475 (1102)
                      ...|...|.+++|||||++|++++ |+++++||....        ...........|...|.+++|++++.   |++|+.
T Consensus        26 ~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---l~~~s~  101 (344)
T 4gqb_B           26 PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERG---ILVASD  101 (344)
T ss_dssp             CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTE---EEEEET
T ss_pred             cccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCe---EEEEEC
Confidence            345778899999999999999888 778888874211        00000111334678899999999864   889999


Q ss_pred             CCcEEEEeCCCCeeeEE----eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEcc
Q 001311          476 DKTIKVWDATNGAKQYI----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA  551 (1102)
Q Consensus       476 d~~i~vWd~~~~~~~~~----~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~  551 (1102)
                      ||+|+|||+.+++.+..    +.+|.+.|++++|+  +++++|++|+.|++|++||+.+++.+..+.+|...|.+++|++
T Consensus       102 dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~  179 (344)
T 4gqb_B          102 SGAVELWELDENETLIVSKFCKYEHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASP  179 (344)
T ss_dssp             TSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECS
T ss_pred             CCEEEEEeccCCCceeEeeccccCCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecC
Confidence            99999999999886644    45899999999985  5678999999999999999999888888888888888888887


Q ss_pred             CCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcE
Q 001311          552 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGI  630 (1102)
Q Consensus       552 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i  630 (1102)
                      ++.                    ..|++++.|+.|++||+++++....+....+...+.+++|+| ++++|++|+.||.|
T Consensus       180 ~~~--------------------~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v  239 (344)
T 4gqb_B          180 HKD--------------------SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV  239 (344)
T ss_dssp             SCT--------------------TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred             CCC--------------------CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence            765                    468999999999999999999988886555555788999999 56788999999999


Q ss_pred             EEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccC
Q 001311          631 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEES  710 (1102)
Q Consensus       631 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  710 (1102)
                      ++||+.++ +.+..+.                                                                
T Consensus       240 ~~wd~~~~-~~~~~~~----------------------------------------------------------------  254 (344)
T 4gqb_B          240 SLVDTKST-SCVLSSA----------------------------------------------------------------  254 (344)
T ss_dssp             EEEESCC---CCEEEE----------------------------------------------------------------
T ss_pred             EEEECCCC-cEEEEEc----------------------------------------------------------------
Confidence            99998765 2211111                                                                


Q ss_pred             CCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccC
Q 001311          711 NDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQP  790 (1102)
Q Consensus       711 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~  790 (1102)
                                                                                                      
T Consensus       255 --------------------------------------------------------------------------------  254 (344)
T 4gqb_B          255 --------------------------------------------------------------------------------  254 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCccccccccCCCCCCCCeeEEEEecCC-CeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311          791 PSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  868 (1102)
Q Consensus       791 ~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~  868 (1102)
                                   +|...|++++|+|++ ++|++++ |++|+|||+.++++. .+.+|.+.|++++|+|++..+|++|+.
T Consensus       255 -------------~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~  320 (344)
T 4gqb_B          255 -------------VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGW  320 (344)
T ss_dssp             -------------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             -------------CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence                         166667788888877 4688887 899999999887654 578899999999999955568889999


Q ss_pred             CCcEEEEEeecce
Q 001311          869 DSSIQIYNVRVDE  881 (1102)
Q Consensus       869 dg~v~vwd~~~~~  881 (1102)
                      ||+|++|++.+..
T Consensus       321 D~~v~~w~v~~~~  333 (344)
T 4gqb_B          321 DHQVVHHVVPTEP  333 (344)
T ss_dssp             TSCEEEEECCC--
T ss_pred             CCeEEEEECCCCC
Confidence            9999999998654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-36  Score=341.59  Aligned_cols=289  Identities=14%  Similarity=0.189  Sum_probs=247.1

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+.+|.+.|++++|+||+++||+|+.|++|+|||..+++...   .+..|...|.+++|+|++.  ++++|+.|+.+++|
T Consensus        59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~  133 (354)
T 2pbi_B           59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY  133 (354)
T ss_dssp             EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred             EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence            478999999999999999999999999999999999887554   4677999999999999999  89999999999999


Q ss_pred             eCCCC------eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCcee
Q 001311          483 DATNG------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  556 (1102)
Q Consensus       483 d~~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  556 (1102)
                      ++...      .....+.+|...|.+++|+  +++..|++++.|++|++||+.+++....+..|...|.++.++++.   
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~---  208 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFT--NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE---  208 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEEC--SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS---
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEe--CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC---
Confidence            98654      3456788899999999985  455799999999999999999988877777777767666665532   


Q ss_pred             eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311          557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                                      ++++|++++.||.|++||+++++++..+..|..  .|.+++|+|++.+|++++.|++|++||+.
T Consensus       209 ----------------~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          209 ----------------TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES--DVNSVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             ----------------SCCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ----------------CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--CeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence                            246899999999999999999999998876644  79999999999999999999999999986


Q ss_pred             CCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccce
Q 001311          637 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  716 (1102)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~  716 (1102)
                      .+. .+..+.                                                                      
T Consensus       271 ~~~-~~~~~~----------------------------------------------------------------------  279 (354)
T 2pbi_B          271 ADR-EVAIYS----------------------------------------------------------------------  279 (354)
T ss_dssp             TTE-EEEEEC----------------------------------------------------------------------
T ss_pred             CCc-EEEEEc----------------------------------------------------------------------
Confidence            541 111000                                                                      


Q ss_pred             EecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccc
Q 001311          717 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  796 (1102)
Q Consensus       717 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  796 (1102)
                                                      .                                               
T Consensus       280 --------------------------------~-----------------------------------------------  280 (354)
T 2pbi_B          280 --------------------------------K-----------------------------------------------  280 (354)
T ss_dssp             --------------------------------C-----------------------------------------------
T ss_pred             --------------------------------C-----------------------------------------------
Confidence                                            0                                               


Q ss_pred             ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          797 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       797 ~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                            ..+...+.+++|+|++++|++++ |++|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|+||
T Consensus       281 ------~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW  353 (354)
T 2pbi_B          281 ------ESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVW  353 (354)
T ss_dssp             ------TTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEE
T ss_pred             ------CCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEec
Confidence                  00233467888999999999998 89999999999999999999999999999999 99999999999999999


Q ss_pred             E
Q 001311          876 N  876 (1102)
Q Consensus       876 d  876 (1102)
                      +
T Consensus       354 ~  354 (354)
T 2pbi_B          354 A  354 (354)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.9e-36  Score=339.09  Aligned_cols=216  Identities=21%  Similarity=0.317  Sum_probs=180.6

Q ss_pred             ccCCCCCCeEEEEE-----cc-CCCeEEEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEE
Q 001311          403 LVKDPGVSVNRVIW-----SP-DGSLFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVIT  472 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~-----sp-dg~~las~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s  472 (1102)
                      .+.+|.+.|++++|     ++ |+++||+|+.|++|+|||+.+++.    ......+.+|...|.+++|+|++.  ++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s   93 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS   93 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence            58899999999999     77 999999999999999999986532    123446889999999999999999  7999


Q ss_pred             ecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee---cCCCCeeeEEEE
Q 001311          473 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY  549 (1102)
Q Consensus       473 ~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~  549 (1102)
                      |+.|++|++||+++++++..+.+|...|.+++|+  +++.+|++++.|++|++||+.. ......   ..+...+.+++|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS--PDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEEC--SSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEEC--CCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence            9999999999999999999999999999999985  4568999999999999999974 322222   256667888888


Q ss_pred             ccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001311          550 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  629 (1102)
Q Consensus       550 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  629 (1102)
                      +|++...           ..+.|.+.+|++++.|+.|++||. ..+....+..|.  ..|.+++|+|++++|++++.||.
T Consensus       171 ~~~~~~~-----------~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~--~~v~~~~~s~~g~~l~sgs~dg~  236 (343)
T 2xzm_R          171 SPIMKSA-----------NKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHE--SNVNHLSISPNGKYIATGGKDKK  236 (343)
T ss_dssp             CCCCCSC-----------SCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCS--SCEEEEEECTTSSEEEEEETTCE
T ss_pred             ccccccc-----------cccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcc--ccceEEEECCCCCEEEEEcCCCe
Confidence            8876421           123455678999999999999994 556666776654  47999999999999999999999


Q ss_pred             EEEEEccC
Q 001311          630 IKILATSD  637 (1102)
Q Consensus       630 i~iwd~~~  637 (1102)
                      |++||+..
T Consensus       237 v~iwd~~~  244 (343)
T 2xzm_R          237 LLIWDILN  244 (343)
T ss_dssp             EEEEESSC
T ss_pred             EEEEECCC
Confidence            99999743

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=4e-37  Score=356.27  Aligned_cols=264  Identities=13%  Similarity=0.140  Sum_probs=229.0

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  426 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  426 (1102)
                      ..+++++|+|+|++ |++|+.|+.|++||+.+++...                   .+..| ..+....|+|++++||+|
T Consensus        57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~  115 (420)
T 3vl1_A           57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG  115 (420)
T ss_dssp             BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred             ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence            34568999999997 9999999999999998765432                   24445 455566889999999999


Q ss_pred             ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeee
Q 001311          427 YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  506 (1102)
Q Consensus       427 ~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~  506 (1102)
                      +.|+.|++||+.+++...   .+.+|.+.|++++|+|+++  +|++|+.|+.|++||+.+++.+..+.+|...|.+++|+
T Consensus       116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence            999999999999887544   4679999999999999999  89999999999999999999999999999999999986


Q ss_pred             ecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC---CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC
Q 001311          507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA---PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  583 (1102)
Q Consensus       507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  583 (1102)
                        +++.+|++++.||.|++||+++++....+..   +...+.++++.+++...........+..++|+|++++|++++.|
T Consensus       191 --~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  268 (420)
T 3vl1_A          191 --DRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVS  268 (420)
T ss_dssp             --TTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETT
T ss_pred             --CCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCC
Confidence              4568999999999999999999888777764   56789999999887766666666788899999999999999999


Q ss_pred             CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCCc
Q 001311          584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~  639 (1102)
                      |.|++||+.+++.+..+.. .+...|.+++|+|++. +|++++.||.|++||+.++.
T Consensus       269 g~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          269 GVITVHNVFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             SCEEEEETTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             CeEEEEECCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            9999999999988877753 3345799999999999 99999999999999998763

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.9e-36  Score=337.46  Aligned_cols=324  Identities=14%  Similarity=0.163  Sum_probs=263.9

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      |.+.|.+++|+|||++ ++++..++.+.+|+........                   ...+|.+.|.+++|+|++++|+
T Consensus         8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY   67 (337)
T ss_dssp             EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred             cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence            5678999999999996 7777767777777655443332                   1457999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEee--ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe--eeEEeecCCCCe
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPV  500 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~~~h~~~v  500 (1102)
                      +++ ||.|++||+.+++.......+.  +|...|.+++|+|+++  +|++++.|+.|++||+.+++  ....+.+|...|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            999 9999999999877554444444  7999999999999999  79999999999999999887  667788999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .+++|+  +++.++++++.||.|++||+++.+....+..+...+.+++|+                     |++++++++
T Consensus       145 ~~~~~~--~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~---------------------~~~~~l~~~  201 (337)
T 1gxr_A          145 YALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDIS---------------------NDGTKLWTG  201 (337)
T ss_dssp             EEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC---------------------TTSSEEEEE
T ss_pred             EEEEEC--CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEEC---------------------CCCCEEEEE
Confidence            999985  466899999999999999999877666666555555555554                     455679999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      +.||.|++||+.+++.+..+...   ..+.+++|+|++++|++++.+|.|++||+.++. ... +               
T Consensus       202 ~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~-~~~-~---------------  261 (337)
T 1gxr_A          202 GLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-KYQ-L---------------  261 (337)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-EEE-E---------------
T ss_pred             ecCCcEEEEECCCCceEeeecCC---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCC-eEE-E---------------
Confidence            99999999999999988887633   358999999999999999999999999976541 000 0               


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (337)
T 1gxr_A          262 --------------------------------------------------------------------------------  261 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  820 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~  820 (1102)
                                                                                    ..|...+.+++|+|++++
T Consensus       262 --------------------------------------------------------------~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          262 --------------------------------------------------------------HLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             --------------------------------------------------------------CCCSSCEEEEEECTTSSE
T ss_pred             --------------------------------------------------------------cCCccceeEEEECCCCCE
Confidence                                                                          015566778888888888


Q ss_pred             EEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311          821 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       821 las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                      |++++ ||.|++||+.+++.+... .|...|.+++|+| ++++|++++.||.|++|++.
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEEe
Confidence            88887 788888888887776544 3788899999999 89999999999999999974

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1.1e-35  Score=328.46  Aligned_cols=289  Identities=18%  Similarity=0.263  Sum_probs=245.7

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +.+|.+.|++++|+|+|++ |++|+.||.|+||++.+++...                   .+.+|...|.+++|+|+++
T Consensus        19 ~~gh~~~v~~~~~s~~~~~-l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~   78 (312)
T 4ery_A           19 LAGHTKAVSSVKFSPNGEW-LASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSN   78 (312)
T ss_dssp             ECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSS
T ss_pred             EcccCCcEEEEEECCCCCE-EEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCC
Confidence            4569999999999999995 9999999999999999887765                   3789999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVY  501 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~  501 (1102)
                      +|++|+.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++|+.|+.|++||+++++++..+.+|...|.
T Consensus        79 ~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  153 (312)
T 4ery_A           79 LLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS  153 (312)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             EEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEE
Confidence            99999999999999999987665   5789999999999999999  799999999999999999999999999999999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                      +++|+  +++.+|++++.||.|++||+.+......+..                    .....+..++|+|++++|++++
T Consensus       154 ~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~l~~~~  211 (312)
T 4ery_A          154 AVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLID--------------------DDNPPVSFVKFSPNGKYILAAT  211 (312)
T ss_dssp             EEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECC--------------------SSCCCEEEEEECTTSSEEEEEE
T ss_pred             EEEEc--CCCCEEEEEeCCCcEEEEECCCCceeeEEec--------------------cCCCceEEEEECCCCCEEEEEc
Confidence            99985  5668999999999999999987665443321                    1123456667777778899999


Q ss_pred             CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc-CCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      .|+.|++||+.+++.+..+..+..........++ +++.+|++++.||.|++||+.++ +.+..+.              
T Consensus       212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~--------------  276 (312)
T 4ery_A          212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQ--------------  276 (312)
T ss_dssp             TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC-CEEEEEC--------------
T ss_pred             CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc-hhhhhhh--------------
Confidence            9999999999999999988876554333334444 57899999999999999998876 3333332              


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                                  +|..
T Consensus       277 ----------------------------------------------------------------------------~h~~  280 (312)
T 4ery_A          277 ----------------------------------------------------------------------------GHTD  280 (312)
T ss_dssp             ----------------------------------------------------------------------------CCSS
T ss_pred             ----------------------------------------------------------------------------ccCC
Confidence                                                                                        2667


Q ss_pred             ceEEEEEccCCceEEEee--cCceEEeeec
Q 001311          741 KISRLIFTNSGNAILALA--SNAIHLLWKW  768 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~--~dg~i~iw~~  768 (1102)
                      .|.+++|+|++..+++++  .|+.|++|+.
T Consensus       281 ~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          281 VVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             CEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             cEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            899999999999999887  5899999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-38  Score=363.95  Aligned_cols=373  Identities=15%  Similarity=0.185  Sum_probs=269.1

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEE----------ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVG----------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  412 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg----------~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  412 (1102)
                      +.+...|.+++|+|+|+.++++|          +.|+.|+|||+.+++....                 .....|...|.
T Consensus         9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~   71 (416)
T 2pm9_A            9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFN   71 (416)
T ss_dssp             -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEE
T ss_pred             HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceE
Confidence            34556899999999998679999          8899999999988753210                 01346889999


Q ss_pred             EEEEccCCCeEEEEECCCeEEEEEccCCce-eeeEEEeeccccCEEEEEEcCC-CCeeEEEEecCCCcEEEEeCCCCe--
Q 001311          413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGA--  488 (1102)
Q Consensus       413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~~~d~~i~vWd~~~~~--  488 (1102)
                      +++|+|++++|++|+.||.|++||+.+... ......+.+|...|.+++|+|+ +.  +|++++.|+.|++||+.+++  
T Consensus        72 ~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~  149 (416)
T 2pm9_A           72 DLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTES  149 (416)
T ss_dssp             EEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSC
T ss_pred             EEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccc
Confidence            999999999999999999999999987211 1133357899999999999998 66  79999999999999999887  


Q ss_pred             ----eeE---EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311          489 ----KQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  561 (1102)
Q Consensus       489 ----~~~---~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  561 (1102)
                          ...   .+.+|...|.+++|+++. +.+|++++.||.|++||+++.+....+..+...              . .+
T Consensus       150 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--------------~-~~  213 (416)
T 2pm9_A          150 PSNYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPN--------------S-GI  213 (416)
T ss_dssp             TTTCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCS--------------S-CC
T ss_pred             cccccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccc--------------c-cc
Confidence                333   346799999999996542 479999999999999999987766665554100              0 00


Q ss_pred             cCceeEEEEcCCC-CEEEEEeCCC---eEEEEECCCc-ceEEEEc-CCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEE
Q 001311          562 KRSLGVVQFDTTK-NRFLAAGDDF---SIKFWDMDSV-QLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILA  634 (1102)
Q Consensus       562 ~~~i~~~~~~~~~-~~l~~~~~dg---~i~iwd~~~~-~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd  634 (1102)
                      ...+.+++|+|++ .++++++.|+   .|++||++++ ..+..+. .+  ...|.+++|+| ++.+|++++.||.|++||
T Consensus       214 ~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd  291 (416)
T 2pm9_A          214 KQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWN  291 (416)
T ss_dssp             CCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEEC
T ss_pred             CCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEee
Confidence            1244445555554 5799999998   9999999986 4555555 44  44799999999 999999999999999999


Q ss_pred             ccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCcc
Q 001311          635 TSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKS  714 (1102)
Q Consensus       635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i  714 (1102)
                      +.++ +.+..+.                                                                    
T Consensus       292 ~~~~-~~~~~~~--------------------------------------------------------------------  302 (416)
T 2pm9_A          292 PESA-EQLSQFP--------------------------------------------------------------------  302 (416)
T ss_dssp             SSSC-CEEEEEE--------------------------------------------------------------------
T ss_pred             CCCC-ccceeec--------------------------------------------------------------------
Confidence            8876 3333322                                                                    


Q ss_pred             ceEecccCCCCCccccccCCCcccccceEEEEEccCC-ceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCc
Q 001311          715 KVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSG-NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  793 (1102)
Q Consensus       715 ~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~  793 (1102)
                                            .|...|.+++|+|++ ..+++++.|+.|++|++...                      
T Consensus       303 ----------------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~----------------------  338 (416)
T 2pm9_A          303 ----------------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNL----------------------  338 (416)
T ss_dssp             ----------------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCC----------------------
T ss_pred             ----------------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCC----------------------
Confidence                                  255678889999999 88999999999999987321                      


Q ss_pred             cccccccCCCCCCC-----CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311          794 IMMTNDVTDSNPEE-----AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  868 (1102)
Q Consensus       794 ~~~~~~~~~~~~~~-----~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~  868 (1102)
                      ...    ..  ...     ......+.+.+..++.+..  +.     .... .....|...+.+++|+| +|++||+|+.
T Consensus       339 ~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~-~~~~~~~~~~~~~~~s~-dg~~la~~~~  403 (416)
T 2pm9_A          339 TNT----LD--EQETETKQQESETDFWNNVSREESKEK--PS-----VFHL-QAPTWYGEPSPAAHWAF-GGKLVQITPD  403 (416)
T ss_dssp             CCS----SC--C----------------------CCSC--CC-----SSCC-CCCSTTCCCSCCCEEET-TTEEECBCTT
T ss_pred             CCC----cc--cccccccccCCcccccccccccccccc--cc-----cccc-cCCccccCCccceEEee-CCeEEEEeCC
Confidence            100    00  100     0011111122222221110  10     0111 22334677888999999 9999999999


Q ss_pred             CCcEEEEEeecc
Q 001311          869 DSSIQIYNVRVD  880 (1102)
Q Consensus       869 dg~v~vwd~~~~  880 (1102)
                      ||.|+||++.+.
T Consensus       404 d~~v~~w~~~~~  415 (416)
T 2pm9_A          404 GKGVSITNPKIS  415 (416)
T ss_dssp             SSCBCCBCCCCC
T ss_pred             CCeEEEEEeccC
Confidence            999999998764

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.9e-36  Score=336.61  Aligned_cols=298  Identities=16%  Similarity=0.209  Sum_probs=238.5

Q ss_pred             cccc-ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          737 LRAT-KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       737 ~~~~-~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                      +|.. .|..++|+|+|++|++++.|+.|++|++....                      .........+|...|.+++|+
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~----------------------~~~~~~~~~~h~~~v~~~~~s   70 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS----------------------WICKSVLSEGHQRTVRKVAWS   70 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTE----------------------EEEEEEECSSCSSCEEEEEEC
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc----------------------ceeeeeeccccCCcEEEEEEC
Confidence            3666 89999999999999999999999999974321                      000000112489999999999


Q ss_pred             cCCCeEEEEe-CCeEEEEEcCCC--ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc---eeeeeeccc
Q 001311          816 KNDSYVMSAS-GGKISLFNMMTF--KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---EVKSKLKGH  889 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~~--~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---~~~~~l~~h  889 (1102)
                      |++++|++++ |++|++|++.+.  +++..+.+|...|.+++|+| ++++|++|+.|+.|++||+.++   +++..+.+|
T Consensus        71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h  149 (345)
T 3fm0_A           71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH  149 (345)
T ss_dssp             TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred             CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence            9999999999 999999998866  45778999999999999999 9999999999999999999875   456778899


Q ss_pred             cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEc
Q 001311          890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFET  968 (1102)
Q Consensus       890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~  968 (1102)
                      ...|.+++|+|++++|++++.|++|++||+..++.   .......+|.   ..|.+++|+|+|++|++ +.|+.|++|+.
T Consensus       150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~---~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHE---STVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCC---CceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            99999999999999999999999999999887542   2233445555   48999999999999999 48999999996


Q ss_pred             CCc---------------eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee----EEEeCCCcccCC
Q 001311          969 TKL---------------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL----RCRINPSAYLPA 1029 (1102)
Q Consensus       969 ~~~---------------~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~----~~~~~~~~~~~~ 1029 (1102)
                      ...               +++..+. ..|...|.+++|+|++.+|++++.|+.|++|+...+..    ...+.  .....
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~  300 (345)
T 3fm0_A          224 YLPGNEQGVACSGSDPSWKCICTLS-GFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT--AHLHQ  300 (345)
T ss_dssp             ECTTCTTCCCCC---CEEEEEEEEC-SSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE--EEETT
T ss_pred             ccCCCCccceeeccCCccceeEEec-CCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE--eeecc
Confidence            322               2233332 24889999999999999999999999999999876531    11110  01123


Q ss_pred             CCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1030 GVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1030 gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +|... |.  +++|+|+++.+|++|+.||+|++|++.+.+
T Consensus       301 ~h~~~-V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          301 AHSQD-VN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             SSSSC-EE--EEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             cccCc-Ee--EeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            44333 66  999999655799999999999999998877

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.7e-35  Score=325.41  Aligned_cols=291  Identities=22%  Similarity=0.406  Sum_probs=247.3

Q ss_pred             EEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEE
Q 001311          446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA  525 (1102)
Q Consensus       446 ~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~  525 (1102)
                      ..++.+|.+.|++++|+|+++  +|++++.|+.|++||+.+++....+.+|...|.+++|+  +++++|++++.|+.|++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~i~v   91 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGE--WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWS--SDSNLLVSASDDKTLKI   91 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTSSEEEEEETTSEEEE
T ss_pred             EEEEcccCCcEEEEEECCCCC--EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEc--CCCCEEEEECCCCEEEE
Confidence            446889999999999999999  89999999999999999999999999999999999985  56689999999999999


Q ss_pred             EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC
Q 001311          526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG  605 (1102)
Q Consensus       526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  605 (1102)
                      ||+.+.+....+..|...|.++.|                     +|++++|++++.|+.|++||+.+++.+..+..+..
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~---------------------~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  150 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNF---------------------NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD  150 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEE---------------------CSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEE---------------------cCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC
Confidence            999988777666666555555554                     45556899999999999999999999988876644


Q ss_pred             CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001311          606 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  685 (1102)
Q Consensus       606 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1102)
                        .|.+++|+|++++|++++.||.|++||+.++. .+..+.                                       
T Consensus       151 --~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~---------------------------------------  188 (312)
T 4ery_A          151 --PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQ-CLKTLI---------------------------------------  188 (312)
T ss_dssp             --CEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEEEEC---------------------------------------
T ss_pred             --cEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc-eeeEEe---------------------------------------
Confidence              79999999999999999999999999986651 111000                                       


Q ss_pred             ccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEe
Q 001311          686 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  765 (1102)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i  765 (1102)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (312)
T 4ery_A          189 --------------------------------------------------------------------------------  188 (312)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec
Q 001311          766 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  844 (1102)
Q Consensus       766 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~  844 (1102)
                                                           ..+...+..++|+|++++|++++ |+.|++||+.+++.+..+.
T Consensus       189 -------------------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  231 (312)
T 4ery_A          189 -------------------------------------DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT  231 (312)
T ss_dssp             -------------------------------------CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEC
T ss_pred             -------------------------------------ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEE
Confidence                                                 00345577788889999999888 8999999999999888888


Q ss_pred             CCCCCee--EEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc--CCCcEEEEEcC
Q 001311          845 PPPPAAT--FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSD  920 (1102)
Q Consensus       845 ~~~~~i~--~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~  920 (1102)
                      +|...+.  ...+++.++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+|++++|++++  .|++|++|+.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          232 GHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             ecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            8876543  3345544889999999999999999999999999999999999999999999999987  69999999864

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.2e-34  Score=373.59  Aligned_cols=526  Identities=11%  Similarity=0.059  Sum_probs=371.3

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      +...+.+.+|||+  + |+..+. +.|.+|++.+++...                    +.+|...|.+++|||||++||
T Consensus        13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la   68 (1045)
T 1k32_A           13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA   68 (1045)
T ss_dssp             CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred             ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence            4567899999964  4 555544 799999998876543                    678999999999999999999


Q ss_pred             EEECC------CeEEEEEccCCceeeeEEEeeccccCE-------EEEEEcCCCCeeEEEEecCC------CcEEEEeCC
Q 001311          425 VAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDD------KTIKVWDAT  485 (1102)
Q Consensus       425 s~~~d------~~v~vwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~d~~~~~l~s~~~d------~~i~vWd~~  485 (1102)
                      +++.+      ..|++||+.+++..    .+..|...+       .+++|+|||+  ++++++.+      ..|++||+.
T Consensus        69 ~~s~~~~~~~~~~i~~~d~~~g~~~----~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~  142 (1045)
T 1k32_A           69 IRVMRGSSLNTADLYFYNGENGEIK----RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND  142 (1045)
T ss_dssp             EEEEESTTCCEEEEEEEETTTTEEE----ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred             EEEeeccCCCCCeEEEEECCCCCeE----EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence            88653      37999999987632    477888888       9999999998  67777754      458888887


Q ss_pred             CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC------------CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311          486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL------------DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  553 (1102)
Q Consensus       486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~------------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  553 (1102)
                      +++... +..+.  ...++|+  + | ++++++.            +...++|..........+..+...+         
T Consensus       143 ~g~~~~-l~~~~--~~~~~~s--p-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v---------  206 (1045)
T 1k32_A          143 GINFVP-LNLGP--ATHILFA--D-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHV---------  206 (1045)
T ss_dssp             GTEEEE-CCSCS--CSEEEEE--T-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCC---------
T ss_pred             CCCeEE-ecCCC--cceeeeC--C-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcc---------
Confidence            777543 33332  3345665  4 5 8888763            2345566433323333333444444         


Q ss_pred             ceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311          554 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       554 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  632 (1102)
                                  ..+.|+++ ..+++++.++.+++|.+.. +.....+..+.   .+..++|+|||++|+.+. ++.|++
T Consensus       207 ------------~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~  269 (1045)
T 1k32_A          207 ------------SSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYI  269 (1045)
T ss_dssp             ------------EEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEE
T ss_pred             ------------cceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEE
Confidence                        44455544 3466677889999998653 44445554443   366789999999998874 899999


Q ss_pred             EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311          633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  712 (1102)
Q Consensus       633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  712 (1102)
                      |+.... . +..+.++...                                                            .
T Consensus       270 ~d~~~~-~-l~~l~~~~~~------------------------------------------------------------~  287 (1045)
T 1k32_A          270 FNPDTE-K-IEKIEIGDLE------------------------------------------------------------S  287 (1045)
T ss_dssp             ECTTTC-C-EEECCCCCCC------------------------------------------------------------B
T ss_pred             ecCCce-E-eeeeccCccc------------------------------------------------------------c
Confidence            998322 1 2122111000                                                            0


Q ss_pred             ccceEecccCCCCCccccccCCCcccccceEEEEEc-cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCC
Q 001311          713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  791 (1102)
Q Consensus       713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~  791 (1102)
                      ..              ..     ..+...+..++|+ |||+.++.++ ++.+.+|++.                      
T Consensus       288 ~~--------------~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~----------------------  325 (1045)
T 1k32_A          288 PE--------------DR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS----------------------  325 (1045)
T ss_dssp             CC--------------SE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT----------------------
T ss_pred             cc--------------cc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCC----------------------
Confidence            00              00     1145678899999 9999888877 7788888752                      


Q ss_pred             CccccccccCCCCCCC-CeeEEEEecCCCeEEEEe-CCeEE-EEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311          792 SGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS-GGKIS-LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD  868 (1102)
Q Consensus       792 ~~~~~~~~~~~~~~~~-~i~~l~~s~d~~~las~s-dg~I~-iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~  868 (1102)
                      .+....  +.  .+.. .+..++|+ ||+.|++++ ++.+. +|++.+++.. .+.+|...+..++|+| |+++|++++.
T Consensus       326 ~~~~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~Sp-DG~~la~~~~  398 (1045)
T 1k32_A          326 GTYVLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDR-NGKFAVVAND  398 (1045)
T ss_dssp             SSBEEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECT-TSSEEEEEET
T ss_pred             CCceEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCCccceeeeEECC-CCCEEEEECC
Confidence            222211  11  1555 78999999 999999988 67788 8999876654 4447888999999999 9999999999


Q ss_pred             CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC----------cEEEEEcCCCcccceeeeecCCCCCC
Q 001311          869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS----------QLCVWSSDGWEKQKNRFLQIPTGRTP  938 (1102)
Q Consensus       869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----------~i~vwd~~~~~~~~~~~~~~~~~~~~  938 (1102)
                      ++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++          .|++||+.+++.     . ....+. 
T Consensus       399 ~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~-----~-~l~~~~-  471 (1045)
T 1k32_A          399 RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-----F-AATTEN-  471 (1045)
T ss_dssp             TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-----E-ECSCSS-
T ss_pred             CCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE-----E-EeeCCC-
Confidence            99999999999988887778999999999999999999887654          899999988542     1 122222 


Q ss_pred             CCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE-----------------------------------------eee
Q 001311          939 TAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC-----------------------------------------VKQ  976 (1102)
Q Consensus       939 ~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~-----------------------------------------~~~  976 (1102)
                        ..+..++|+|||++|+.+ .++...+|+......                                         .+.
T Consensus       472 --~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~  549 (1045)
T 1k32_A          472 --SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRS  549 (1045)
T ss_dssp             --SBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGC
T ss_pred             --cccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHce
Confidence              256789999999999885 555555565432211                                         001


Q ss_pred             eccCCCCCCeeEEEEcCCCcEEEE-------------EeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEe
Q 001311          977 WVPRESSAPITHATFSCDSQLVYA-------------CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1043 (1102)
Q Consensus       977 ~~~~~h~~~v~~l~~spd~~~l~s-------------~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f 1043 (1102)
                      .....|.+.+..++++|||+++++             ...+..|++||+.+++.....       .+     +.  ++.|
T Consensus       550 ~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-------~~-----v~--~~~~  615 (1045)
T 1k32_A          550 SPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-------NN-----LT--DLRL  615 (1045)
T ss_dssp             EECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-------EE-----EE--EEEE
T ss_pred             EEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-------cC-----cc--eEEE
Confidence            111245678999999999998875             123567899999998754322       11     33  7899


Q ss_pred             cCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1044 HPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1044 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +| ||+.|++++.| .|++||+.+++
T Consensus       616 S~-DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          616 SA-DRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             CT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred             CC-CCCEEEEEcCC-cEEEEeCccCc
Confidence            99 68999988766 89999998876

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.1e-37  Score=357.05  Aligned_cols=356  Identities=10%  Similarity=0.047  Sum_probs=234.2

Q ss_pred             ccceeeccCCCCeeEEEEecCC---------CeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCC
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQ---------QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP  407 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg---------~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  407 (1102)
                      .+...++.+.+.|.+|+|+|++         + +||+|+.++..                                    
T Consensus       124 ~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~------------------------------------  166 (524)
T 2j04_B          124 KRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMD------------------------------------  166 (524)
T ss_dssp             CSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC---------------------------------------
T ss_pred             CcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccC------------------------------------
Confidence            4445566789999999999997         5 58888755310                                    


Q ss_pred             CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceee-eEEEeeccccCEEEEEEcCC------CCeeEEEEecCCCcEE
Q 001311          408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHP------NKQLCVITCGDDKTIK  480 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d------~~~~~l~s~~~d~~i~  480 (1102)
                            -..+|++++||+++.|++|+|||+.+++... ....+.+|.+.|.+++|+|+      +.  +|++++.||+|+
T Consensus       167 ------~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~Dgtvr  238 (524)
T 2j04_B          167 ------EPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTIN  238 (524)
T ss_dssp             ---------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEE
T ss_pred             ------CccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEE
Confidence                  0136899999999999999999999876432 12346778899999999997      45  799999999999


Q ss_pred             EEeCCCCee-----------eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC-eeeecCCCCeeeEEE
Q 001311          481 VWDATNGAK-----------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMA  548 (1102)
Q Consensus       481 vWd~~~~~~-----------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~  548 (1102)
                      |||+.++..           ...+.+|...|.+++|++  + ..|++|+.||+|++||++++.. ...+..|...|.+++
T Consensus       239 lWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~  315 (524)
T 2j04_B          239 FLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS  315 (524)
T ss_dssp             EEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred             EEEcCCCccccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence            999987642           347889999999999964  2 4899999999999999987543 334555665555552


Q ss_pred             EccCCceeeeccccCceeEEEEcCCC-CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311          549 YSADGTRTYQGFRKRSLGVVQFDTTK-NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  627 (1102)
Q Consensus       549 ~s~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  627 (1102)
                      +                   .+++++ ++|++++.|++|++||++++++...+..+.....|.+++|+|+++.+++++.|
T Consensus       316 ~-------------------~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d  376 (524)
T 2j04_B          316 T-------------------AYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGA  376 (524)
T ss_dssp             E-------------------ECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSS
T ss_pred             E-------------------EcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCC
Confidence            1                   234444 57999999999999999998877666554332347899999999999999999


Q ss_pred             CcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcccc
Q 001311          628 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRIT  707 (1102)
Q Consensus       628 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  707 (1102)
                      ++|++||++++ .....+.                                                             
T Consensus       377 ~tv~lwd~~~~-~~~~~l~-------------------------------------------------------------  394 (524)
T 2j04_B          377 SSLRAVPSRAA-FAVHPLV-------------------------------------------------------------  394 (524)
T ss_dssp             SEEEEEETTCT-TCCEEEE-------------------------------------------------------------
T ss_pred             CcEEEEECccc-ccceeee-------------------------------------------------------------
Confidence            99999998765 2211111                                                             


Q ss_pred             ccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccccccee
Q 001311          708 EESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL  787 (1102)
Q Consensus       708 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~  787 (1102)
                                                   +|...|.+++|+|+|+.|++++.|++|++|+                    
T Consensus       395 -----------------------------gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd--------------------  425 (524)
T 2j04_B          395 -----------------------------SRETTITAIGVSRLHPMVLAGSADGSLIITN--------------------  425 (524)
T ss_dssp             -----------------------------ECSSCEEEEECCSSCCBCEEEETTTEEECCB--------------------
T ss_pred             -----------------------------cCCCceEEEEeCCCCCeEEEEECCCEEEEEe--------------------
Confidence                                         1445555556666555555555555555554                    


Q ss_pred             ccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecC-----CCCCeeEEEEecCCCcE
Q 001311          788 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP-----PPPAATFLAFHPQDNNI  862 (1102)
Q Consensus       788 w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~-----~~~~i~~l~~sp~d~~~  862 (1102)
                                                                    +... .+..+..     +...+..++|+| ++..
T Consensus       426 ----------------------------------------------~~~~-~~~~~~~~~~~~~~~~v~~v~~sp-~g~~  457 (524)
T 2j04_B          426 ----------------------------------------------AARR-LLHGIKNSSATQKSLRLWKWDYSI-KDDK  457 (524)
T ss_dssp             ----------------------------------------------SCSS-TTTCC------CCCCEEEECBCCS-SSCE
T ss_pred             ----------------------------------------------chHh-hccccccCccceeeeEEEEeccCC-CCCe
Confidence                                                          3221 1111100     112356788999 6765


Q ss_pred             EEEEeCCCcEEEEEee-cceeeeeeccccccceeEEEecCCC---EEEEEcCCCcEEEEEcCC
Q 001311          863 IAIGMDDSSIQIYNVR-VDEVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       863 lasg~~dg~v~vwd~~-~~~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~vwd~~~  921 (1102)
                      +. ...+  +.+|+.. ++.++..+.+|...|.+|+|+|++.   +||+|+.||+|+||++..
T Consensus       458 ~~-~~~~--~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          458 YR-IDSS--YEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             EE-ECCC--CCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             EE-ccCC--ceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            43 2222  3344433 4677888999999999999999954   999999999999999876

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-35  Score=335.75  Aligned_cols=274  Identities=14%  Similarity=0.239  Sum_probs=207.3

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      +...++|.+.|+|++|||||++ ||+|+ |++++||++.+++.+.......-.. .............+...|.+++|+|
T Consensus        57 ~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~v~~v~~s~  133 (393)
T 1erj_A           57 LHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAAN-KDPENLNTSSSPSSDLYIRSVCFSP  133 (393)
T ss_dssp             EEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred             eEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccc-cccccccccccCCCceeEEEEEECC
Confidence            4456689999999999999996 78876 6899999999998765421100000 0000000011123445699999999


Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  498 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~  498 (1102)
                      ||++||+|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||++++++...+. +..
T Consensus       134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~  207 (393)
T 1erj_A          134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED  207 (393)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence            99999999999999999999987554   5889999999999999999  79999999999999999999988887 567


Q ss_pred             CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      .+.+++|++ .++.+|++|+.|+.|++||++++.....+....             ....+ +...+.+++|+|++++|+
T Consensus       208 ~v~~~~~~~-~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~-------------~~~~~-h~~~v~~v~~~~~g~~l~  272 (393)
T 1erj_A          208 GVTTVAVSP-GDGKYIAAGSLDRAVRVWDSETGFLVERLDSEN-------------ESGTG-HKDSVYSVVFTRDGQSVV  272 (393)
T ss_dssp             CEEEEEECS-TTCCEEEEEETTSCEEEEETTTCCEEEEEC-------------------CC-CSSCEEEEEECTTSSEEE
T ss_pred             CcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEeecccc-------------cCCCC-CCCCEEEEEECCCCCEEE
Confidence            788898864 366899999999999999998866554432110             00011 223566777777778999


Q ss_pred             EEeCCCeEEEEECCCcc------------eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          579 AAGDDFSIKFWDMDSVQ------------LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~~------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +++.|+.|++||+.+..            +...+.+|  ...|.+++|+|++.+|++++.||.|++||..++
T Consensus       273 s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~  342 (393)
T 1erj_A          273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG  342 (393)
T ss_dssp             EEETTSEEEEEEC---------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTC
T ss_pred             EEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC
Confidence            99999999999997632            34455544  447999999999999999999999999998877

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1e-35  Score=333.04  Aligned_cols=320  Identities=12%  Similarity=0.150  Sum_probs=258.9

Q ss_pred             CCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311          407 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  486 (1102)
Q Consensus       407 h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~  486 (1102)
                      |.+.|.+++|+|||++++++..++.+.+|+.......   ....+|.+.|++++|+|+++  ++++++ |+.|++||+.+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ---INTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE---EEEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc---ceeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence            4568999999999999999988887777755443222   23457999999999999999  788888 99999999988


Q ss_pred             Cee---eEEee--cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCceeeec
Q 001311          487 GAK---QYIFE--GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       487 ~~~---~~~~~--~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      ++.   +..+.  +|...|.+++|+  +++++|++++.||.|++||+.+.+.  ...+..+..                 
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----------------  142 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLL--PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-----------------  142 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEEC--TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS-----------------
T ss_pred             CCceeeeecccccCCCCcEEEEEEc--CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC-----------------
Confidence            753   33443  799999999985  4668999999999999999987652  223333333                 


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  639 (1102)
                          .+.+++|+|+++++++++.||.|++||+.+++.+..+..+.  ..+.+++|+|++++|++++.||.|++||+.++.
T Consensus       143 ----~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          143 ----ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             ----CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             ----ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence                45555666666789999999999999999999998887654  479999999999999999999999999986651


Q ss_pred             cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311          640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  719 (1102)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~  719 (1102)
                       ....+                                                                          
T Consensus       217 -~~~~~--------------------------------------------------------------------------  221 (337)
T 1gxr_A          217 -QLQQH--------------------------------------------------------------------------  221 (337)
T ss_dssp             -EEEEE--------------------------------------------------------------------------
T ss_pred             -eEeee--------------------------------------------------------------------------
Confidence             11100                                                                          


Q ss_pred             ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311          720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  799 (1102)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  799 (1102)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (337)
T 1gxr_A          222 --------------------------------------------------------------------------------  221 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311          800 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       800 ~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                          .+...+.+++|+|+++++++++ ++.|++||+.+++. ..+..|...|.+++|+| ++++|++++.||.|++||+.
T Consensus       222 ----~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          222 ----DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             ----ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETT
T ss_pred             ----cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECC
Confidence                0334567778888888888887 78888888887664 46778999999999999 89999999999999999999


Q ss_pred             cceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      +++.+.. ..|...|.+++|+|++++|++++.||.|++|++
T Consensus       296 ~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          296 YGASIFQ-SKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             TCCEEEE-EECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCeEEEE-ecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence            9887754 458889999999999999999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.6e-35  Score=342.73  Aligned_cols=346  Identities=12%  Similarity=0.102  Sum_probs=260.7

Q ss_pred             CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe
Q 001311          409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  488 (1102)
Q Consensus       409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~  488 (1102)
                      ..+++++|+|+|++|++++.|+.|++||+.+++...   .+..| ..+....|+++++  +|++|+.|+.|++||+.+++
T Consensus        57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~  130 (420)
T 3vl1_A           57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL  130 (420)
T ss_dssp             BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred             ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence            345689999999999999999999999998876543   24445 4555667899999  79999999999999999999


Q ss_pred             eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEE
Q 001311          489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  568 (1102)
Q Consensus       489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  568 (1102)
                      .+..+.+|...|.+++|+  +++.+|++++.|+.|++||+.+.+....+..|...|.+++|+|++               
T Consensus       131 ~~~~~~~h~~~v~~~~~~--~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---------------  193 (420)
T 3vl1_A          131 QREIDQAHVSEITKLKFF--PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG---------------  193 (420)
T ss_dssp             EEEETTSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---------------
T ss_pred             eeeecccccCccEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---------------
Confidence            999999999999999985  456899999999999999999888777777776666666665555               


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC-CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311          569 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG-GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       569 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                            ++|++++.|+.|++||+.+++.+..+..+. +...+.++++.+++...          ++.....       . 
T Consensus       194 ------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~-------~-  249 (420)
T 3vl1_A          194 ------RNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------LHEISTS-------K-  249 (420)
T ss_dssp             ------TEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------CGGGCCC-------C-
T ss_pred             ------CEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------eeecccC-------c-
Confidence                  579999999999999999999998887542 23355566655432211          0011111       0 


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311          648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  727 (1102)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~  727 (1102)
                                                                                                      
T Consensus       250 --------------------------------------------------------------------------------  249 (420)
T 3vl1_A          250 --------------------------------------------------------------------------------  249 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311          728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  807 (1102)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  807 (1102)
                                    +.+++|+|+++.+++++.||.|++||+..                      +........  .|..
T Consensus       250 --------------v~~~~~s~~~~~l~~~~~dg~i~i~d~~~----------------------~~~~~~~~~--~~~~  291 (420)
T 3vl1_A          250 --------------KNNLEFGTYGKYVIAGHVSGVITVHNVFS----------------------KEQTIQLPS--KFTC  291 (420)
T ss_dssp             --------------CCTTCSSCTTEEEEEEETTSCEEEEETTT----------------------CCEEEEECC--TTSS
T ss_pred             --------------ccceEEcCCCCEEEEEcCCCeEEEEECCC----------------------CceeEEccc--ccCC
Confidence                          01123455555566666666666665421                      111111111  2677


Q ss_pred             CeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCce-eeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc---
Q 001311          808 AVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKT-MATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---  880 (1102)
Q Consensus       808 ~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~-~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---  880 (1102)
                      .|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++++.||.|++||+...   
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~~~  369 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPESE  369 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTTCC
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCCCC
Confidence            899999999998 889888 89999999998754 666766 5667788755 4 6789999999999999999863   


Q ss_pred             ------eeeeeeccccccceeEEEecCCC---EEEEEcCCCcEEEEEcCC
Q 001311          881 ------EVKSKLKGHSKRITGLAFSHALN---VLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       881 ------~~~~~l~~h~~~V~~l~~s~d~~---~l~s~s~Dg~i~vwd~~~  921 (1102)
                            .....+.+|.+.|.+++|+|+++   .|++++.+|.+.+|+++.
T Consensus       370 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          370 RPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             ccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence                  22234567889999999999999   788888899999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.4e-35  Score=325.76  Aligned_cols=252  Identities=17%  Similarity=0.241  Sum_probs=196.2

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe--eEEeeeeeeeccCCCCccccccc-cCCCCCCeEEEEEc
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAAL-VKDPGVSVNRVIWS  417 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s  417 (1102)
                      .+.+|.+.|++++|+|+   +||+|+.|++|+|||+.++.  ....                  + ..+|.+.|.+++|+
T Consensus         9 ~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~------------------~~~~~h~~~v~~v~~s   67 (330)
T 2hes_X            9 SLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDV------------------LDETAHKKAIRSVAWR   67 (330)
T ss_dssp             EEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEE------------------ECTTCCCSCEEEEEEC
T ss_pred             eeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEE------------------EecCCccCCEEEEEEC
Confidence            34569999999999998   59999999999999998753  2221                  1 23499999999999


Q ss_pred             cCCCeEEEEECCCeEEEEEccCCc----eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC----Cee
Q 001311          418 PDGSLFGVAYSRHIVQIYSYHGGD----EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----GAK  489 (1102)
Q Consensus       418 pdg~~las~~~d~~v~vwd~~~~~----~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~----~~~  489 (1102)
                      |++++||+|+.|++|+|||+....    .......+.+|.+.|.+++|+|+++  +|++|+.|++|++||+..    .++
T Consensus        68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~  145 (330)
T 2hes_X           68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYEC  145 (330)
T ss_dssp             TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEE
T ss_pred             CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEE
Confidence            999999999999999999996432    1233446889999999999999999  899999999999999943    256


Q ss_pred             eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC--CCeeeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311          490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL--GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  567 (1102)
Q Consensus       490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  567 (1102)
                      +..+.+|...|.+++|++  ++.+|++++.|++|++||....  .....+.+|...|.+++|+|++.             
T Consensus       146 ~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-------------  210 (330)
T 2hes_X          146 ISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEG-------------  210 (330)
T ss_dssp             EEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSS-------------
T ss_pred             EEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCC-------------
Confidence            788999999999999864  5689999999999999998765  34455666666666666665521             


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCc--------ceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          568 VQFDTTKNRFLAAGDDFSIKFWDMDSV--------QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                            +.+|++++.|++|++||+..+        .+...+.. .+...|.+++|++++ +|++++.||.|++|+..++
T Consensus       211 ------~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~  281 (330)
T 2hes_X          211 ------VFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD-VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG  281 (330)
T ss_dssp             ------SCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS-CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred             ------eeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc-ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence                  357999999999999998764        23333332 134579999999765 8999999999999997655

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.6e-35  Score=340.94  Aligned_cols=341  Identities=17%  Similarity=0.299  Sum_probs=264.5

Q ss_pred             ccCCCCCCe-EEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          403 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       403 ~~~~h~~~V-~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                      .+.+|.+.| .++.|  ++++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|++++   ++++|+.||+|++
T Consensus       116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v  187 (464)
T 3v7d_B          116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV  187 (464)
T ss_dssp             EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred             EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence            477898885 55555  67899999999999999999988655   578999999999999887   4999999999999


Q ss_pred             EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce-eeecc
Q 001311          482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR-TYQGF  560 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~-~~~~~  560 (1102)
                      ||+.+++++..+.+|...|.+++|.+.+++.++++++.||.|++||+.+............ ...+...+++.. .....
T Consensus       188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  266 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-YPLVFHTPEENPYFVGVL  266 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CC-SSEEESCGGGCTTEEEEE
T ss_pred             EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCC-cceEeeccCCCeEEEEEc
Confidence            9999999999999999999999998878889999999999999999987665433222111 112222222221 11111


Q ss_pred             ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311          561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                      ........+++++++++++++.||.|++||+.+++.+..+..+.  ..|.+++|+|++++|++++.||.|++||+.++ +
T Consensus       267 ~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~  343 (464)
T 3v7d_B          267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT--DRIYSTIYDHERKRCISASMDTTIRIWDLENG-E  343 (464)
T ss_dssp             CCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEEETTTTEEEEEETTSCEEEEETTTT-E
T ss_pred             cCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC--CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC-c
Confidence            11222334457788999999999999999999999999987664  47999999999999999999999999998766 2


Q ss_pred             ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311          641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  720 (1102)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~  720 (1102)
                      .+..+.                                                                          
T Consensus       344 ~~~~~~--------------------------------------------------------------------------  349 (464)
T 3v7d_B          344 LMYTLQ--------------------------------------------------------------------------  349 (464)
T ss_dssp             EEEEEC--------------------------------------------------------------------------
T ss_pred             EEEEEe--------------------------------------------------------------------------
Confidence            222111                                                                          


Q ss_pred             cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311          721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  800 (1102)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  800 (1102)
                                                                                                      
T Consensus       350 --------------------------------------------------------------------------------  349 (464)
T 3v7d_B          350 --------------------------------------------------------------------------------  349 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          801 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       801 ~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                         +|...|.+++++  ++++++++ ||.|++||+.++....... +...+..++|++ ++++|++|+ ||.|++||+.+
T Consensus       350 ---~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          350 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             ---CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTEEEEEETTT
T ss_pred             ---CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCeEEEEECCC
Confidence               155556666665  46777777 7888888888776655554 666788899999 899999998 89999999999


Q ss_pred             ceeeee-eccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311          880 DEVKSK-LKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       880 ~~~~~~-l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  918 (1102)
                      ++.+.. +.+|...|++++|+ ++.++++++.|+.+.+|-
T Consensus       422 g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          422 GKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             CCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            998876 67899999999997 445556666777665553

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.9e-34  Score=323.19  Aligned_cols=211  Identities=19%  Similarity=0.295  Sum_probs=178.9

Q ss_pred             ccCCCCCCeEEEEEccC-CCeEEEEECCCeEEEEEccCCcee--eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311          403 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  479 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~vwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i  479 (1102)
                      ++.||.+.|++|+|+|+ +++||||+.|++|+|||+.+++..  .....+.+|...|.+++|+|+++  +|++++.|+.|
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i  110 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTL  110 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccc
Confidence            58899999999999997 689999999999999999876532  23456889999999999999999  89999999999


Q ss_pred             EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee-eecCCCCeeeEEEEccCCceeee
Q 001311          480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV-DYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      ++|+...+........+...+..+.+  .+++.+|++++.|+.+++||+....... ....+...+..++|++++.    
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~----  184 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGHTKDVLSVAF--SSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS----  184 (340)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEE--CTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS----
T ss_pred             eEEeecccceeeeecCCCCceeEEEE--eecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC----
Confidence            99999999999988888888888776  4556799999999999999987644332 3344555666666665543    


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                                     ..++++++.|+.|++||+.+++.+..+..+.  ..|.+++|+|++++|++++.||.|++||+.+.
T Consensus       185 ---------------~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          185 ---------------NPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             ---------------SCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ---------------CcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence                           2467889999999999999999999888664  47999999999999999999999999998765

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=8.5e-35  Score=332.21  Aligned_cols=304  Identities=16%  Similarity=0.277  Sum_probs=236.3

Q ss_pred             eccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC------------------CeEEEeeeecCCc
Q 001311          450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA------------------PVYSVCPHHKENI  511 (1102)
Q Consensus       450 ~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~------------------~v~~v~~~~~~~~  511 (1102)
                      .+|.+.|.+++|+|||+  +|++|+ ++.+++|++.+++.+..+.+|..                  .|.+++|+  +++
T Consensus        61 ~~h~~~V~~v~fspdg~--~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s--~dg  135 (393)
T 1erj_A           61 LDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS--PDG  135 (393)
T ss_dssp             EECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEEC--TTS
T ss_pred             cCCCCEEEEEEECCCCC--EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEEC--CCC
Confidence            36999999999999999  788876 68999999999999988876542                  38889884  567


Q ss_pred             cEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001311          512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  591 (1102)
Q Consensus       512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  591 (1102)
                      .+|++|+.|+.|++||+.+.+....+..|...|.+++|+|++                     ++|++++.|+.|++||+
T Consensus       136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---------------------~~l~s~s~d~~v~iwd~  194 (393)
T 1erj_A          136 KFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---------------------DKLVSGSGDRTVRIWDL  194 (393)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SEEEEEETTSEEEEEET
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---------------------CEEEEecCCCcEEEEEC
Confidence            899999999999999999877766666666666665555554                     57999999999999999


Q ss_pred             CCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhh
Q 001311          592 DSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAA  670 (1102)
Q Consensus       592 ~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (1102)
                      .+++....+..+.   .+.+++|+| ++++|++++.||.|++||+.++ ..+..+.....                    
T Consensus       195 ~~~~~~~~~~~~~---~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~-~~~~~~~~~~~--------------------  250 (393)
T 1erj_A          195 RTGQCSLTLSIED---GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVERLDSENE--------------------  250 (393)
T ss_dssp             TTTEEEEEEECSS---CEEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEEEEC------------------------
T ss_pred             CCCeeEEEEEcCC---CcEEEEEECCCCCEEEEEcCCCcEEEEECCCC-cEEEeeccccc--------------------
Confidence            9999888876443   488999999 9999999999999999998876 33222210000                    


Q ss_pred             HhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccC
Q 001311          671 AAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNS  750 (1102)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~  750 (1102)
                                                                                     ...+|...|.+++|+|+
T Consensus       251 ---------------------------------------------------------------~~~~h~~~v~~v~~~~~  267 (393)
T 1erj_A          251 ---------------------------------------------------------------SGTGHKDSVYSVVFTRD  267 (393)
T ss_dssp             -----------------------------------------------------------------CCCSSCEEEEEECTT
T ss_pred             ---------------------------------------------------------------CCCCCCCCEEEEEECCC
Confidence                                                                           00236667777777777


Q ss_pred             CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEE
Q 001311          751 GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKIS  830 (1102)
Q Consensus       751 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~  830 (1102)
                      |+.|++++.|+.|++||+...                      ..             ....                  
T Consensus       268 g~~l~s~s~d~~v~~wd~~~~----------------------~~-------------~~~~------------------  294 (393)
T 1erj_A          268 GQSVVSGSLDRSVKLWNLQNA----------------------NN-------------KSDS------------------  294 (393)
T ss_dssp             SSEEEEEETTSEEEEEEC--------------------------------------------------------------
T ss_pred             CCEEEEEeCCCEEEEEECCCC----------------------CC-------------cccc------------------
Confidence            777777777777777775210                      00             0000                  


Q ss_pred             EEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEec------CCCE
Q 001311          831 LFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH------ALNV  904 (1102)
Q Consensus       831 iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~------d~~~  904 (1102)
                       -....+.+...+.+|...|.+++|+| ++.+|++|+.||.|++||+.+++.+..+.+|.+.|.+++|++      ++++
T Consensus       295 -~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~  372 (393)
T 1erj_A          295 -KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV  372 (393)
T ss_dssp             -------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred             -cCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCE
Confidence             00012345566778999999999999 899999999999999999999999999999999999999986      6889


Q ss_pred             EEEEcCCCcEEEEEcCC
Q 001311          905 LVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       905 l~s~s~Dg~i~vwd~~~  921 (1102)
                      |++|+.|++|+||++..
T Consensus       373 l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          373 FATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEEEETTSEEEEEEEEE
T ss_pred             EEEECCCCcEEECcccc
Confidence            99999999999999865

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=5.9e-35  Score=327.03  Aligned_cols=291  Identities=18%  Similarity=0.287  Sum_probs=221.8

Q ss_pred             eEEEeeccccCEEEEEE-----cC-CCCeeEEEEecCCCcEEEEeCCCC-------eeeEEeecCCCCeEEEeeeecCCc
Q 001311          445 QHLEIDAHVGGVNDIAF-----SH-PNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPVYSVCPHHKENI  511 (1102)
Q Consensus       445 ~~~~l~~h~~~V~~v~~-----s~-d~~~~~l~s~~~d~~i~vWd~~~~-------~~~~~~~~h~~~v~~v~~~~~~~~  511 (1102)
                      ....+.+|.+.|++++|     ++ |++  +|++|+.|++|++||+.++       .+...+.+|...|.+++|+  +++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~--~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~--~~~   88 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSP--VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS--QEN   88 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCC--EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC--SST
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCC--EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC--CCC
Confidence            34468899999999999     76 787  8999999999999998753       4567889999999999985  556


Q ss_pred             cEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001311          512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  591 (1102)
Q Consensus       512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  591 (1102)
                      .++++++.|++|++||++++.....+..|...|.+++|+|++                     ++|++++.|+.|++||+
T Consensus        89 ~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---------------------~~l~s~~~d~~i~~wd~  147 (343)
T 2xzm_R           89 CFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---------------------RQILSAGAEREIKLWNI  147 (343)
T ss_dssp             TEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---------------------TEEEEEETTSCEEEEES
T ss_pred             CEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---------------------CEEEEEcCCCEEEEEec
Confidence            899999999999999999887777777776666666655555                     57999999999999999


Q ss_pred             CCcceEEEEcCCCCCCCcCeEEEcCCC----------CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCC
Q 001311          592 DSVQLLTSIDADGGLPASPRIRFNKDG----------CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  661 (1102)
Q Consensus       592 ~~~~~~~~~~~~~~~~~v~~~~~s~~~----------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (1102)
                      .............+...|.+++|+|++          .+|++++.||.|++||.. . ....                  
T Consensus       148 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~-~~~~------------------  207 (343)
T 2xzm_R          148 LGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-F-QIRY------------------  207 (343)
T ss_dssp             SSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-T-EEEE------------------
T ss_pred             cCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-C-ceeE------------------
Confidence            744333322223445578899999876          455555555555555521 1 0000                  


Q ss_pred             CcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc
Q 001311          662 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  741 (1102)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  741 (1102)
                                                                                                      
T Consensus       208 --------------------------------------------------------------------------------  207 (343)
T 2xzm_R          208 --------------------------------------------------------------------------------  207 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeE
Q 001311          742 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  821 (1102)
Q Consensus       742 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l  821 (1102)
                                                                               .+.  +|...|.+++|+|++++|
T Consensus       208 ---------------------------------------------------------~~~--~h~~~v~~~~~s~~g~~l  228 (343)
T 2xzm_R          208 ---------------------------------------------------------TFK--AHESNVNHLSISPNGKYI  228 (343)
T ss_dssp             ---------------------------------------------------------EEE--CCSSCEEEEEECTTSSEE
T ss_pred             ---------------------------------------------------------EEc--CccccceEEEECCCCCEE
Confidence                                                                     000  167778888888888888


Q ss_pred             EEEe-CCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee--eec----------
Q 001311          822 MSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLK----------  887 (1102)
Q Consensus       822 as~s-dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~--~l~----------  887 (1102)
                      ++++ |+.|++||+.. ......+. +...|.+++|+| ++.++++| .|+.|++||+.+++...  .+.          
T Consensus       229 ~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v~~sp-~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~  305 (343)
T 2xzm_R          229 ATGGKDKKLLIWDILNLTYPQREFD-AGSTINQIAFNP-KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ  305 (343)
T ss_dssp             EEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEEEECS-SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred             EEEcCCCeEEEEECCCCcccceeec-CCCcEEEEEECC-CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence            8888 88888888843 33334443 455699999999 88888755 57889999998765443  333          


Q ss_pred             -cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCC
Q 001311          888 -GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGW  922 (1102)
Q Consensus       888 -~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  922 (1102)
                       +|...|++++|+|+|++|++|+.||+|++|+++++
T Consensus       306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence             68889999999999999999999999999998764

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.5e-36  Score=348.51  Aligned_cols=373  Identities=11%  Similarity=0.140  Sum_probs=268.8

Q ss_pred             EEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEEEEECCCe
Q 001311          353 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHI  431 (1102)
Q Consensus       353 ~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~  431 (1102)
                      .|+|+++. +++++      .|+. +++.+..                  +..+|.+.|++++|+| ++++||+|+.||+
T Consensus        34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~   87 (437)
T 3gre_A           34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV   87 (437)
T ss_dssp             GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred             hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence            36777775 55544      3874 4555543                  2389999999999999 9999999999999


Q ss_pred             EEEEEccC---CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC---CCeeeEEeec----------
Q 001311          432 VQIYSYHG---GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFEG----------  495 (1102)
Q Consensus       432 v~vwd~~~---~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~---~~~~~~~~~~----------  495 (1102)
                      |+|||+.+   +........+ +|...|.+++|+|+++  +|++|+.|++|++||+.   +++.+..+.+          
T Consensus        88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~  164 (437)
T 3gre_A           88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKN  164 (437)
T ss_dssp             EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGG
T ss_pred             EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccC
Confidence            99999987   5433222233 5999999999999999  79999999999999995   6655544432          


Q ss_pred             --CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC--CCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311          496 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  571 (1102)
Q Consensus       496 --h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  571 (1102)
                        +...+.++.+...+++.+|++++.||.|++||+++.+....+..  |..                     .+.+++|+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~---------------------~v~~~~~s  223 (437)
T 3gre_A          165 FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG---------------------AVSSICID  223 (437)
T ss_dssp             GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC---------------------CEEEEEEC
T ss_pred             cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC---------------------ceEEEEEC
Confidence              45566666665667889999999999999999998777665554  334                     45555555


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc----CCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311          572 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN----KDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       572 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                      |++++|++++.||.|++||+++++++..+.... ...|.+++|+    +++.+|++++.||.|++||+.++ +....+.+
T Consensus       224 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~  301 (437)
T 3gre_A          224 EECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFIN  301 (437)
T ss_dssp             TTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEES
T ss_pred             CCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEc
Confidence            666789999999999999999999988886322 2368899655    56889999999999999999888 55555544


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311          648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  727 (1102)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~  727 (1102)
                      |...                                                                            
T Consensus       302 ~~~~----------------------------------------------------------------------------  305 (437)
T 3gre_A          302 SDEQ----------------------------------------------------------------------------  305 (437)
T ss_dssp             SSSC----------------------------------------------------------------------------
T ss_pred             CCCC----------------------------------------------------------------------------
Confidence            3321                                                                            


Q ss_pred             cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311          728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  807 (1102)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  807 (1102)
                                    +..+.|+|+++.+    .+..                                     +.+..|..
T Consensus       306 --------------~~~~~~~~~~~~l----~~~~-------------------------------------~~~~~~~~  330 (437)
T 3gre_A          306 --------------PSMEHFLPIEKGL----EELN-------------------------------------FCGIRSLN  330 (437)
T ss_dssp             --------------CCGGGGSCBCSSG----GGCC-------------------------------------CCCCCSGG
T ss_pred             --------------Cccceeccccccc----ccce-------------------------------------ecccccCC
Confidence                          1122233333221    0000                                     11112778


Q ss_pred             CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      .|.+++|+ ++++|++++ |+.|++||+.+++....+.+|..   .+....+++ +..+++..        |+...+...
T Consensus       331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~  400 (437)
T 3gre_A          331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSV  400 (437)
T ss_dssp             GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------
T ss_pred             ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------ccccccccc
Confidence            89999999 888999998 99999999999999999888643   455666666 55444433        333344455


Q ss_pred             eeeccccccceeEEEecC--CCEEEEEcCCCcEEEEE
Q 001311          884 SKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd  918 (1102)
                      ..+..|.+.|++++|+++  +.+|++++.||.|+||+
T Consensus       401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            666779999999999998  78999999999999995

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.9e-34  Score=336.08  Aligned_cols=317  Identities=19%  Similarity=0.311  Sum_probs=267.9

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|+  +.  ++++|+.|++|++|
T Consensus       113 ~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vw  184 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVW  184 (445)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEE
T ss_pred             EecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEE
Confidence            47789987643 356679999999999999999999988665   578999999999997  44  79999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      |+.+++++..+.+|...|.++.|+    +..+++|+.||.|++||+.+++....+..+...+.++.+             
T Consensus       185 d~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-------------  247 (445)
T 2ovr_B          185 NAETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-------------  247 (445)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-------------
T ss_pred             ECCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-------------
Confidence            999999999999999999999873    258999999999999999988877777777666666655             


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  642 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  642 (1102)
                                +++++++++.||.|++||+.+++.+..+..+.  ..|.++.|  ++.++++++.||.|++||+.++ +.+
T Consensus       248 ----------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~-~~~  312 (445)
T 2ovr_B          248 ----------DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETG-NCI  312 (445)
T ss_dssp             ----------CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred             ----------CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCC-CEE
Confidence                      23469999999999999999999999887664  47888888  8899999999999999998766 221


Q ss_pred             eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                      ..+.                                                                            
T Consensus       313 ~~~~----------------------------------------------------------------------------  316 (445)
T 2ovr_B          313 HTLT----------------------------------------------------------------------------  316 (445)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            1111                                                                            


Q ss_pred             CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                                                                                                      
T Consensus       317 --------------------------------------------------------------------------------  316 (445)
T 2ovr_B          317 --------------------------------------------------------------------------------  316 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC---CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311          803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                       +|...+.++.+  +++++++++ ||.|++||+.+++.+..+..   |...|++++|+   +++|++|+.||.|++||+.
T Consensus       317 -~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          317 -GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             -CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             -CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECC
Confidence             03444555554  456888888 89999999999999888876   78889999995   4799999999999999999


Q ss_pred             cceeeeee-----ccccccceeEEEecCCCEEEEEcCCCc----EEEEEcCC
Q 001311          879 VDEVKSKL-----KGHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG  921 (1102)
Q Consensus       879 ~~~~~~~l-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~----i~vwd~~~  921 (1102)
                      +++.+..+     .+|.+.|++++|+|++.+|++++.||+    |.|||++.
T Consensus       391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            99988887     578899999999999999999999998    99999976

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6e-34  Score=331.89  Aligned_cols=320  Identities=15%  Similarity=0.272  Sum_probs=265.7

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      .+.+|.+.|.. +++++|++ +++|+.||+|+|||+.+++.+.                   .+.+|.+.|.+++|+  +
T Consensus       113 ~l~~h~~~v~~-~~~~~g~~-l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~--~  169 (445)
T 2ovr_B          113 VLKGHDDHVIT-CLQFCGNR-IVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR--D  169 (445)
T ss_dssp             EEECSTTSCEE-EEEEETTE-EEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--T
T ss_pred             EecccCCCcEE-EEEEcCCE-EEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--C
Confidence            35568887533 35566885 9999999999999999998876                   378999999999997  6


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      ++|++|+.||+|++||+.+++.+.   .+.+|...|.+++|+  ++  .+++|+.|++|++||+.+++.+..+.+|...|
T Consensus       170 ~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v  242 (445)
T 2ovr_B          170 NIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAV  242 (445)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCE
T ss_pred             CEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccE
Confidence            799999999999999999987654   578999999999995  45  69999999999999999999999999999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .++++    ++.++++|+.||.|++||+++......+..+...+.++.+                       ++.+++++
T Consensus       243 ~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~l~~~  295 (445)
T 2ovr_B          243 RCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF-----------------------DGIHVVSG  295 (445)
T ss_dssp             EEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE-----------------------CSSEEEEE
T ss_pred             EEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE-----------------------CCCEEEEE
Confidence            99987    4578999999999999999988777777777666666655                       33579999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      +.|+.|++||+.+++.+..+..+..  .+.++.+  ++.+|++++.||.|++||+.++ +.+..+.++            
T Consensus       296 ~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~-~~~~~~~~~------------  358 (445)
T 2ovr_B          296 SLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL--KDNILVSGNADSTVKIWDIKTG-QCLQTLQGP------------  358 (445)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE--ETTEEEEEETTSCEEEEETTTC-CEEEEECST------------
T ss_pred             eCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE--eCCEEEEEeCCCeEEEEECCCC-cEEEEEccC------------
Confidence            9999999999999999998876643  5655555  6779999999999999998766 222211100            


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                                      
T Consensus       359 --------------------------------------------------------------------------------  358 (445)
T 2ovr_B          359 --------------------------------------------------------------------------------  358 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  820 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~  820 (1102)
                                                                                    ..|...|.+++++  +++
T Consensus       359 --------------------------------------------------------------~~~~~~v~~~~~~--~~~  374 (445)
T 2ovr_B          359 --------------------------------------------------------------NKHQSAVTCLQFN--KNF  374 (445)
T ss_dssp             --------------------------------------------------------------TSCSSCEEEEEEC--SSE
T ss_pred             --------------------------------------------------------------CCCCCCEEEEEEC--CCE
Confidence                                                                          0155667777774  578


Q ss_pred             EEEEe-CCeEEEEEcCCCceeeee-----cCCCCCeeEEEEecCCCcEEEEEeCCCc----EEEEEeec
Q 001311          821 VMSAS-GGKISLFNMMTFKTMATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSS----IQIYNVRV  879 (1102)
Q Consensus       821 las~s-dg~I~iwd~~~~~~~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~----v~vwd~~~  879 (1102)
                      +++++ ||.|++||+.+++.+..+     .+|.+.|.+++|+| ++.++|+|+.||.    |.|||+..
T Consensus       375 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          375 VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             EEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccCCCCccEEEEEECCC
Confidence            88888 899999999999888877     46788999999999 9999999999998    99999874

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=1.1e-33  Score=364.36  Aligned_cols=493  Identities=13%  Similarity=0.072  Sum_probs=355.0

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEec------CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCC
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS  410 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~------d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  410 (1102)
                      .....+..|...|.+++|||||++ ||.++.      +..|.+||+.+++..                    .+..|...
T Consensus        43 g~~~~lt~~~~~v~~~~~SPDG~~-la~~s~~~~~~~~~~i~~~d~~~g~~~--------------------~lt~~~~~  101 (1045)
T 1k32_A           43 GSTRKIVSNLGVINNARFFPDGRK-IAIRVMRGSSLNTADLYFYNGENGEIK--------------------RITYFSGK  101 (1045)
T ss_dssp             CCEEEEECSSSEEEEEEECTTSSE-EEEEEEESTTCCEEEEEEEETTTTEEE--------------------ECCCCCEE
T ss_pred             CcEEEeeeCCCcccCeEECCCCCE-EEEEEeeccCCCCCeEEEEECCCCCeE--------------------EcccCCCc
Confidence            445666779999999999999997 555433      247999999988643                    26778888


Q ss_pred             e-------EEEEEccCCCeEEEEECC------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC--
Q 001311          411 V-------NRVIWSPDGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--  475 (1102)
Q Consensus       411 V-------~~l~~spdg~~las~~~d------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--  475 (1102)
                      +       .+++|||||+++++++.+      ..|.+|++.+++...    +..+  ....++|+| |   ++++++.  
T Consensus       102 ~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~l~~~~~~~  171 (1045)
T 1k32_A          102 STGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---RRVIGRNTF  171 (1045)
T ss_dssp             EETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---EEEEEESCS
T ss_pred             ccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---EEEEeccCC
Confidence            8       999999999977777754      458888888876432    3333  345678999 6   3666542  


Q ss_pred             ----------CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCee
Q 001311          476 ----------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWC  544 (1102)
Q Consensus       476 ----------d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v  544 (1102)
                                +...++|....+.....+.+|...+.++.|+  ++ .++++++.|+.+.+|.++.. .....+..+. .+
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s--~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~  247 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIV--GH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DY  247 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEE--TT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SS
T ss_pred             CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEe--CC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Cc
Confidence                      3456677544444556668999999999985  44 57788888999999987642 2233332222 22


Q ss_pred             eEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC---------CCCCcCeEEEc
Q 001311          545 TTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG---------GLPASPRIRFN  615 (1102)
Q Consensus       545 ~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~~~~s  615 (1102)
                      ..                     .+|+|+|++++.+ .++.|++||+.... +..+..+.         +...+.+++|+
T Consensus       248 ~~---------------------~~~SpDG~~la~~-~~~~i~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S  304 (1045)
T 1k32_A          248 YP---------------------RHLNTDGRRILFS-KGGSIYIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFS  304 (1045)
T ss_dssp             CE---------------------EEEEESSSCEEEE-ETTEEEEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEE
T ss_pred             ce---------------------eeEcCCCCEEEEE-eCCEEEEecCCceE-eeeeccCcccccccccccccccceeeec
Confidence            33                     3445555566666 48899999995443 44444321         11258899999


Q ss_pred             -CCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCC
Q 001311          616 -KDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG  694 (1102)
Q Consensus       616 -~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1102)
                       |||++|++++ ++.|++|+..++. ... +.                                                
T Consensus       305 ~pdG~~la~~~-~~~i~~~~~~~~~-~~~-~~------------------------------------------------  333 (1045)
T 1k32_A          305 PLDGDLIAFVS-RGQAFIQDVSGTY-VLK-VP------------------------------------------------  333 (1045)
T ss_dssp             ECGGGCEEEEE-TTEEEEECTTSSB-EEE-CS------------------------------------------------
T ss_pred             CCCCCEEEEEE-cCEEEEEcCCCCc-eEE-cc------------------------------------------------
Confidence             9999999888 7899999876551 111 10                                                


Q ss_pred             CccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc-ceEEEEEccCCceEEEeecCceEE-eeeccccc
Q 001311          695 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT-KISRLIFTNSGNAILALASNAIHL-LWKWQRTE  772 (1102)
Q Consensus       695 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~dg~i~-iw~~~~~~  772 (1102)
                                                                .+.. .+..++|+ ||+.++.++.++.+. +|++.   
T Consensus       334 ------------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~---  367 (1045)
T 1k32_A          334 ------------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR---  367 (1045)
T ss_dssp             ------------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT---
T ss_pred             ------------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC---
Confidence                                                      1333 67889999 999999888877666 66652   


Q ss_pred             cCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001311          773 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT  851 (1102)
Q Consensus       773 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~  851 (1102)
                                         ++....  +.  ++...+..++|+|||++|++++ ++.|++||+.+++....+.+|...+.
T Consensus       368 -------------------~~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          368 -------------------TGKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             -------------------TCCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             -------------------CCCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence                               222221  11  2677899999999999999998 78999999999998888878999999


Q ss_pred             EEEEecCCCcEEEEEeCCC----------cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311          852 FLAFHPQDNNIIAIGMDDS----------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       852 ~l~~sp~d~~~lasg~~dg----------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                      +++|+| |+++|++++.++          .|++||+.+++ ...+..|...+.+++|+|||++|++++.++...+|+...
T Consensus       425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            999999 899998887654          99999999887 677888888899999999999999999888888887543


Q ss_pred             Ccccce---ee--eec-----------------------CCCC-------CCCCCCCcEEEEccCCcEEEE---------
Q 001311          922 WEKQKN---RF--LQI-----------------------PTGR-------TPTAQSDTRVQFHQDQIHFLV---------  957 (1102)
Q Consensus       922 ~~~~~~---~~--~~~-----------------------~~~~-------~~~~~~v~~~~~spdg~~l~~---------  957 (1102)
                      ......   .+  +..                       ..+.       ......+..++|+|||+++++         
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            221000   00  000                       0000       011245678999999998875         


Q ss_pred             ---E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311          958 ---V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus       958 ---~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
                         +  ....|.+||+.+++.....      ..+.+++|||||++|++++.| .|++||+.+++
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~~~~l~------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRKVTEVK------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCCEEEEE------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             cccccCCCceEEEEECCCCcEEEee------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence               1  2457889999988864432      468899999999999999866 89999998887

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-34  Score=322.86  Aligned_cols=292  Identities=13%  Similarity=0.166  Sum_probs=225.7

Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                      .+|...|.++.|+++  +|++++.|+.|++|++.....                    .... .+...+|...|.+++|+
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~--------------------~~~~-~~~~~~h~~~v~~v~~s   67 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF--------------------TLID-VLDETAHKKAIRSVAWR   67 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC--------------------EEEE-EECTTCCCSCEEEEEEC
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe--------------------EEEE-EEecCCccCCEEEEEEC
Confidence            358899999999998  899999999999999743110                    1111 01112388999999999


Q ss_pred             cCCCeEEEEe-CCeEEEEEcCC-------CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec----ceee
Q 001311          816 KNDSYVMSAS-GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV----DEVK  883 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~----~~~~  883 (1102)
                      |++++|++++ |++|++||+..       .+.+..+.+|...|.+++|+| ++++||+|+.|++|++||+..    .+++
T Consensus        68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~  146 (330)
T 2hes_X           68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECI  146 (330)
T ss_dssp             TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred             CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence            9999999999 99999999853       345677899999999999999 899999999999999999943    3567


Q ss_pred             eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC--CcEEEE-EeC
Q 001311          884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD--QIHFLV-VHE  960 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~-~~d  960 (1102)
                      ..+.+|...|.+++|+|++.+|++++.|++|++||+.++.   ...+....+|.   ..|.+++|+|+  +.+|++ +.|
T Consensus       147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~---~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D  220 (330)
T 2hes_X          147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD---WECVAVLNGHE---GTVWSSDFDKTEGVFRLCSGSDD  220 (330)
T ss_dssp             EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---EEEEEEECCCS---SCEEEEEECCSSSSCEEEEEETT
T ss_pred             EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCC---eeEEEEccCCC---CcEEEEEecCCCCeeEEEEEeCC
Confidence            7889999999999999999999999999999999987642   12445556665   38999999999  778888 589


Q ss_pred             CeEEEEEcCCc--------eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee--EEEeCCCcccCCC
Q 001311          961 TQLAIFETTKL--------ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL--RCRINPSAYLPAG 1030 (1102)
Q Consensus       961 ~~i~iwd~~~~--------~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~--~~~~~~~~~~~~g 1030 (1102)
                      +.|++||+.++        .+...+. ..|...|.+++|++++ +|++++.||+|+|||..+++.  .....      .+
T Consensus       221 ~~v~iw~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~------~~  292 (330)
T 2hes_X          221 STVRVWKYMGDDEDDQQEWVCEAILP-DVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA------LC  292 (330)
T ss_dssp             SCEEEEEEEEECTTSCEEEEEEEECC-SCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES------CT
T ss_pred             CeEEEEEecCCCccccceeEEeeecc-cccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc------cc
Confidence            99999999765        3333332 2489999999999765 899999999999999988743  32221      23


Q ss_pred             CCCCcccceEEEecCC-CCCEEEEEecCCcEEEEeccC
Q 001311         1031 VSSSNVHPLVIAAHPQ-EPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1031 h~~~~v~~~~v~f~p~-d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      |....+.  +++|+|. ++.+|++|+.||+|++|++.+
T Consensus       293 h~~~~v~--~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGVYEIN--VVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTSCEE--EEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cccceEE--EEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            3332355  8999985 578999999999999999865

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4e-36  Score=351.23  Aligned_cols=355  Identities=9%  Similarity=0.014  Sum_probs=236.8

Q ss_pred             CCCCeEEEEEccCC---------CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC
Q 001311          407 PGVSVNRVIWSPDG---------SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK  477 (1102)
Q Consensus       407 h~~~V~~l~~spdg---------~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~  477 (1102)
                      +.+.|.+|+|+|++         ++||+|+.++..                          -..+|+++  ++++++.|+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~  183 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS  183 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence            56799999999987         799999866420                          01368888  799999999


Q ss_pred             cEEEEeCCCCeee----EEeecCCCCeEEEeeeec----CCccEEEEEeCCCeEEEEEcCCCCCeee-ecCCCCeeeEEE
Q 001311          478 TIKVWDATNGAKQ----YIFEGHEAPVYSVCPHHK----ENIQFIFSTALDGKIKAWLYDNLGSRVD-YEAPGRWCTTMA  548 (1102)
Q Consensus       478 ~i~vWd~~~~~~~----~~~~~h~~~v~~v~~~~~----~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~  548 (1102)
                      +|+|||+.++++.    .++.+|.+.|.+++|++.    +++.+|++++.||+|++||+........ .....       
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~-------  256 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCE-------  256 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCC-------
T ss_pred             eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeec-------
Confidence            9999999887653    456778899999999875    3467999999999999999986542200 00000       


Q ss_pred             EccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEEcCCCCCCCcCeE--EEcCCC-CEEEEE
Q 001311          549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSIDADGGLPASPRI--RFNKDG-CLLAVS  624 (1102)
Q Consensus       549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~  624 (1102)
                         .....+.+| ...+.+++|+++ ..|++|+.||+|++||+.++. +...+..|.  ..|.++  +|++++ .+|+++
T Consensus       257 ---~p~~~l~~h-~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~--~~V~sv~~~~s~~g~~~laS~  329 (524)
T 2j04_B          257 ---KPSLTLSLA-DSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD--SYILSVSTAYSDFEDTVVSTV  329 (524)
T ss_dssp             ---SCSEEECCT-TTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSS--SCEEEEEEECCTTSCCEEEEE
T ss_pred             ---CceEEEEcC-CCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeeccc--ccEEEEEEEcCCCCCeEEEEe
Confidence               000122222 236667777664 479999999999999998764 445566554  479998  578888 899999


Q ss_pred             ECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCc
Q 001311          625 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP  704 (1102)
Q Consensus       625 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1102)
                      +.|++|++||++++ +....+.+|.                                                       
T Consensus       330 S~D~tvklWD~~~~-~~~~~~~~~~-------------------------------------------------------  353 (524)
T 2j04_B          330 AVDGYFYIFNPKDI-ATTKTTVSRF-------------------------------------------------------  353 (524)
T ss_dssp             ETTSEEEEECGGGH-HHHCEEEEEC-------------------------------------------------------
T ss_pred             ccCCeEEEEECCCC-Cccccccccc-------------------------------------------------------
Confidence            99999999998765 2211111000                                                       


Q ss_pred             cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccccc
Q 001311          705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA  784 (1102)
Q Consensus       705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  784 (1102)
                                                                                                      
T Consensus       354 --------------------------------------------------------------------------------  353 (524)
T 2j04_B          354 --------------------------------------------------------------------------------  353 (524)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEE
Q 001311          785 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII  863 (1102)
Q Consensus       785 ~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l  863 (1102)
                                          ....|.+++|+|+++.+++++ |++|++||++++.++.++.+|.+.|++++|+| ++++|
T Consensus       354 --------------------~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l  412 (524)
T 2j04_B          354 --------------------RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMV  412 (524)
T ss_dssp             --------------------SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBC
T ss_pred             --------------------ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeE
Confidence                                112356788999998888887 88999999999998888999999999999999 89999


Q ss_pred             EEEeCCCcEEEEEeecceeeeeecc-----ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC
Q 001311          864 AIGMDDSSIQIYNVRVDEVKSKLKG-----HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP  938 (1102)
Q Consensus       864 asg~~dg~v~vwd~~~~~~~~~l~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  938 (1102)
                      ++|+.||+|++||+..+ .+..+..     +...|++++|+|+++.+. ...+  +.+|+.                   
T Consensus       413 ~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~-------------------  469 (524)
T 2j04_B          413 LAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPL-------------------  469 (524)
T ss_dssp             EEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC--------------------
T ss_pred             EEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceeccc-------------------
Confidence            99999999999998643 2222211     112456777777776331 1111  111111                   


Q ss_pred             CCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc---EEEEEeCCCeEEEEEcCC
Q 001311          939 TAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ---LVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       939 ~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~---~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                                                  + .++.++..+.  +|...|.+++|+|++.   +||+|+.||.|+||++.-
T Consensus       470 ----------------------------~-~~g~~~~~l~--gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          470 ----------------------------T-VNDVSKAKID--AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             -------------------------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             ----------------------------c-cCCcceeeec--CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence                                        0 0122333333  7889999999999954   999999999999999764

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=4e-34  Score=320.52  Aligned_cols=303  Identities=18%  Similarity=0.257  Sum_probs=245.1

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +.+|.+.|++|+|+|++..+|+||+.|++|+|||+.+.+.....              ....+.+|...|.+++|+|||+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~s~dg~   99 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVISSDGQ   99 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEECTTSS
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEECCCCC
Confidence            34699999999999985446999999999999999876432211              1125789999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee-EEeecCCCCe
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ-YIFEGHEAPV  500 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~-~~~~~h~~~v  500 (1102)
                      +|++|+.|+.|++|+...+....   ....+...+..+.+++++.  +|++++.|+.+++||+...... ..+.+|...+
T Consensus       100 ~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v  174 (340)
T 4aow_A          100 FALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV  174 (340)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred             EEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence            99999999999999999876554   3567888999999999999  7999999999999998876554 4557899999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      ..++|++.....++++++.|+.|++||+.+......+..|...|.+++|+|++                     ++|+++
T Consensus       175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~---------------------~~l~s~  233 (340)
T 4aow_A          175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG---------------------SLCASG  233 (340)
T ss_dssp             EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---------------------SEEEEE
T ss_pred             cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCC---------------------CEEEEE
Confidence            99999887777889999999999999999877777776666656555555554                     579999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      +.|+.|++||+.+.+.+..+..+.   .+.++.|+|++.+++ ++.|+.|++||+.++ ..+..+......         
T Consensus       234 s~Dg~i~iwd~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~-~~~~~~~~~~~~---------  299 (340)
T 4aow_A          234 GKDGQAMLWDLNEGKHLYTLDGGD---IINALCFSPNRYWLC-AATGPSIKIWDLEGK-IIVDELKQEVIS---------  299 (340)
T ss_dssp             ETTCEEEEEETTTTEEEEEEECSS---CEEEEEECSSSSEEE-EEETTEEEEEETTTT-EEEEEECCC------------
T ss_pred             eCCCeEEEEEeccCceeeeecCCc---eEEeeecCCCCceee-ccCCCEEEEEECCCC-eEEEecccccee---------
Confidence            999999999999999998887553   588999999887655 556899999998876 333333211100         


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                              ....+|..
T Consensus       300 ------------------------------------------------------------------------~~~~~h~~  307 (340)
T 4aow_A          300 ------------------------------------------------------------------------TSSKAEPP  307 (340)
T ss_dssp             ----------------------------------------------------------------------------CCCC
T ss_pred             ------------------------------------------------------------------------eeccCCCC
Confidence                                                                                    00023778


Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKWQR  770 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~  770 (1102)
                      .|.+++|+|+|++|++++.||.|++|++.+
T Consensus       308 ~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          308 QCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            999999999999999999999999999854

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.3e-36  Score=347.46  Aligned_cols=386  Identities=15%  Similarity=0.193  Sum_probs=283.1

Q ss_pred             EEccCCCeEEEEECCCeEEEEEccCCceeeeEEEe-eccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCC---Ce-
Q 001311          415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATN---GA-  488 (1102)
Q Consensus       415 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l-~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~---~~-  488 (1102)
                      .|+|+++.+++++      .|+.. ++.+.   .+ .+|.+.|++++|+| +++  +|++|+.|++|+|||+.+   +. 
T Consensus        34 ~f~~~~~~~~~~~------~w~~~-g~~~~---~~~~~h~~~V~~~~~s~~~~~--~l~s~s~dg~v~vwd~~~~~~~~~  101 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGNLR-GKLIA---TLMENEPNSITSSAVSPGETP--YLITGSDQGVIKIWNLKEIIVGEV  101 (437)
T ss_dssp             GGCCCCCCCCCCC------GGGCC-CCEEE---EECTTTTSCEEEEEEECSSSC--EEEEEETTSEEEEEEHHHHHTTCC
T ss_pred             hcCCccccccccc------ccccc-ceEEe---eeccCCCCceEEEEECCCCCC--EEEEecCCceEEEeECcccccCcc
Confidence            4678888888765      37743 34333   46 78999999999999 888  899999999999999877   43 


Q ss_pred             --eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcC---CCCCeeeecCCCCeeeEEEEccCCceeeeccccC
Q 001311          489 --KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD---NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  563 (1102)
Q Consensus       489 --~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  563 (1102)
                        ....+ +|...|.+++|+  +++.+|++++.||.|++||+.   .+........+  .+..+.+++++       ...
T Consensus       102 ~~~~~~~-~h~~~v~~~~~~--~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~-------~~~  169 (437)
T 3gre_A          102 YSSSLTY-DCSSTVTQITMI--PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG-------KNE  169 (437)
T ss_dssp             CSCSEEE-ECSSCEEEEEEC--TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS-------SCC
T ss_pred             cceeeec-cCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc-------ccc
Confidence              23344 499999999986  466899999999999999995   44444444433  67777777643       123


Q ss_pred             ceeEEE--EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311          564 SLGVVQ--FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  641 (1102)
Q Consensus       564 ~i~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  641 (1102)
                      .+.++.  +++++++|++++.|+.|++||+.+++.+..+..+.+...|.+++|+|++++|++++.||.|++||+.++ ..
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~  248 (437)
T 3gre_A          170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN-VL  248 (437)
T ss_dssp             CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT-EE
T ss_pred             CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc-cE
Confidence            555665  678899999999999999999999999999987434558999999999999999999999999998765 22


Q ss_pred             eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311          642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  721 (1102)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~  721 (1102)
                      +..+.                                                                           
T Consensus       249 ~~~~~---------------------------------------------------------------------------  253 (437)
T 3gre_A          249 IRSWS---------------------------------------------------------------------------  253 (437)
T ss_dssp             EEEEB---------------------------------------------------------------------------
T ss_pred             EEEEe---------------------------------------------------------------------------
Confidence            22211                                                                           


Q ss_pred             CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311          722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  801 (1102)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  801 (1102)
                                    ..|...|.+++++|                                                    
T Consensus       254 --------------~~~~~~v~~~~~~~----------------------------------------------------  267 (437)
T 3gre_A          254 --------------FGDHAPITHVEVCQ----------------------------------------------------  267 (437)
T ss_dssp             --------------CTTCEEEEEEEECT----------------------------------------------------
T ss_pred             --------------cCCCCceEEEEecc----------------------------------------------------
Confidence                          00222333333322                                                    


Q ss_pred             CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                                 .|++++++|++++ |+.|++||+.+++++..+.+|...+..+.|+| +++.+    .+.          
T Consensus       268 -----------~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l----~~~----------  321 (437)
T 3gre_A          268 -----------FYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP-IEKGL----EEL----------  321 (437)
T ss_dssp             -----------TTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC-BCSSG----GGC----------
T ss_pred             -----------ccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc-ccccc----ccc----------
Confidence                       2335677899988 89999999999999999999999999999999 65554    111          


Q ss_pred             eeeeeecc--ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311          881 EVKSKLKG--HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  958 (1102)
Q Consensus       881 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  958 (1102)
                          .+.+  |...|++++|+ ++++|++++.|+.|++||+.+++...     ...++...........++++..+++..
T Consensus       322 ----~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (437)
T 3gre_A          322 ----NFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK-----AVISPSRFSDVFIPTQVTANLTMLLRK  391 (437)
T ss_dssp             ----CCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE-----EEECC--CCCEEEEEEEETTEEEEEEE
T ss_pred             ----eecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce-----EEecccccCceEEEEEeecceEEEEEe
Confidence                1444  99999999999 88999999999999999999876532     222332222345556666666655443


Q ss_pred             eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC--CcEEEEEeCCCeEEEEE
Q 001311          959 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD--SQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       959 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd--~~~l~s~s~Dg~I~vwd 1011 (1102)
                             |+..........  ..|...|++++|+++  +.+|++|+.||.|+||+
T Consensus       392 -------~~~~~~~~~~~~--~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          392 -------MKRTSTHSVDDS--LYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             -------CC---------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             -------cccccccccCcc--cccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence                   222233333332  368999999999998  88999999999999995

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.7e-33  Score=330.25  Aligned_cols=320  Identities=15%  Similarity=0.251  Sum_probs=262.7

Q ss_pred             eeeccCCCCe-eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          340 TRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       340 ~~~~~h~~~v-~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      ..+.+|...| .|+.|  +++ ++++|+.||+|++||+.+++.+..                   +.+|.+.|.+++|+|
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l~~~~  172 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKYAH  172 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEEEECS
T ss_pred             EEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEEEEcC
Confidence            3455687775 66666  456 499999999999999999988763                   789999999999999


Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCee-------
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAK-------  489 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~vWd~~~~~~-------  489 (1102)
                      ++ +|++|+.||+|++||+.+++.+.   .+.+|.+.|.+++|++  ++.  ++++|+.|++|++||+.++..       
T Consensus       173 ~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~  246 (464)
T 3v7d_B          173 GG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE  246 (464)
T ss_dssp             TT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------
T ss_pred             CC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccccccc
Confidence            88 99999999999999999987654   5789999999999995  556  899999999999999998753       


Q ss_pred             ----------------eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311          490 ----------------QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  553 (1102)
Q Consensus       490 ----------------~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  553 (1102)
                                      +..+.+|...|.++.    +++.++++++.||.|++||+.+.+....+..|...+.+++|++++
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~  322 (464)
T 3v7d_B          247 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  322 (464)
T ss_dssp             CCSSEEESCGGGCTTEEEEECCCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             CCcceEeeccCCCeEEEEEccCccceEEEEc----CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCC
Confidence                            557788999998874    334799999999999999999877777766666656555555554


Q ss_pred             ceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001311          554 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL  633 (1102)
Q Consensus       554 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  633 (1102)
                                           +++++++.||.|++||+.+++.+..+..|..  .|.+++|+  +.+|++++.||.|++|
T Consensus       323 ---------------------~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          323 ---------------------KRCISASMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGW  377 (464)
T ss_dssp             ---------------------TEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEE
T ss_pred             ---------------------CEEEEEeCCCcEEEEECCCCcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEE
Confidence                                 5799999999999999999999999986644  78889987  6899999999999999


Q ss_pred             EccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001311          634 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  713 (1102)
Q Consensus       634 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  713 (1102)
                      |+.++..... .                                                                    
T Consensus       378 d~~~~~~~~~-~--------------------------------------------------------------------  388 (464)
T 3v7d_B          378 DANDYSRKFS-Y--------------------------------------------------------------------  388 (464)
T ss_dssp             ETTTCCEEEE-E--------------------------------------------------------------------
T ss_pred             ECCCCceeee-e--------------------------------------------------------------------
Confidence            9865411000 0                                                                    


Q ss_pred             cceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCc
Q 001311          714 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSG  793 (1102)
Q Consensus       714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~  793 (1102)
                                                                                                      
T Consensus       389 --------------------------------------------------------------------------------  388 (464)
T 3v7d_B          389 --------------------------------------------------------------------------------  388 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcE
Q 001311          794 IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSI  872 (1102)
Q Consensus       794 ~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v  872 (1102)
                                .+...+..++|+++++++++++||.|++||+.+++.+.. +..|...|.+++|+  +..++++++.||.+
T Consensus       389 ----------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~  456 (464)
T 3v7d_B          389 ----------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQS  456 (464)
T ss_dssp             ----------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEE
T ss_pred             ----------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeE
Confidence                      033446678889999999999999999999999999876 67788999999997  46777778888877


Q ss_pred             EEEEe
Q 001311          873 QIYNV  877 (1102)
Q Consensus       873 ~vwd~  877 (1102)
                      .+|-+
T Consensus       457 ~i~~l  461 (464)
T 3v7d_B          457 FLEIL  461 (464)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=320.78  Aligned_cols=302  Identities=16%  Similarity=0.251  Sum_probs=253.8

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++|
T Consensus        27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw  101 (369)
T 3zwl_B           27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW  101 (369)
T ss_dssp             EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred             EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence            578999999999999999999999999999999999987665   5789999999999999999  79999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC-----CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d-----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      |+.+++++..+. |...|.+++|+  +++.++++++.+     +.|++||+........+                    
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~--~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~--------------------  158 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFS--PCGNYFLAILDNVMKNPGSINIYEIERDSATHEL--------------------  158 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEEC--TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE--------------------
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEc--cCCCEEEEecCCccCCCCEEEEEEecCCccceee--------------------
Confidence            999999999988 88999999985  566899999998     99999998764332211                    


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                                          ...            ....+..+..+.....+.+++|+|++++|++++.||.|++||+.+
T Consensus       159 --------------------~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  206 (369)
T 3zwl_B          159 --------------------TKV------------SEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN  206 (369)
T ss_dssp             --------------------EEE------------CSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             --------------------ccc------------ccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence                                000            111222333333334688999999999999999999999999865


Q ss_pred             CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311          638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  717 (1102)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w  717 (1102)
                      .......+.                                                                       
T Consensus       207 ~~~~~~~~~-----------------------------------------------------------------------  215 (369)
T 3zwl_B          207 NYEYVDSID-----------------------------------------------------------------------  215 (369)
T ss_dssp             TTEEEEEEE-----------------------------------------------------------------------
T ss_pred             CcEeEEEEe-----------------------------------------------------------------------
Confidence            311111110                                                                       


Q ss_pred             ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccc
Q 001311          718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT  797 (1102)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  797 (1102)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (369)
T 3zwl_B          216 --------------------------------------------------------------------------------  215 (369)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC------
Q 001311          798 NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS------  870 (1102)
Q Consensus       798 ~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg------  870 (1102)
                            .|...|.+++|+|++++|++++ |+.|++||+.+++.+..+. +...+.+++|+| +++++++++.++      
T Consensus       216 ------~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~  287 (369)
T 3zwl_B          216 ------LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTT  287 (369)
T ss_dssp             ------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECS-SSSEEEEEECCC------
T ss_pred             ------cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCCceeEEecC-CCceEEEeecCCCceEEE
Confidence                  1566688888888888888888 8999999999988888887 778899999999 899999999988      


Q ss_pred             --------cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCc
Q 001311          871 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWE  923 (1102)
Q Consensus       871 --------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~  923 (1102)
                              .+++||+.+++.+..+.+|...|++++|+|++++|++++.||.|++|+++.+.
T Consensus       288 ~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          288 TSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             -------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             EecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence                    89999999999999999999999999999999999999999999999998754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-33  Score=349.31  Aligned_cols=260  Identities=21%  Similarity=0.304  Sum_probs=213.7

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +.+|.+.|++|+|+|++..+|+||+.|++|+|||+.+......              .....+.+|...|.+++|+|+|+
T Consensus       378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~  443 (694)
T 3dm0_A          378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQ  443 (694)
T ss_dssp             EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSS
T ss_pred             cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCC
Confidence            4579999999999998766799999999999999976432110              01114789999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe---ecCCC
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF---EGHEA  498 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~---~~h~~  498 (1102)
                      +|++|+.|++|+|||+.++..++   .+.+|...|.+++|+|+++  +|++|+.|++|++||+.........   .+|..
T Consensus       444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~  518 (694)
T 3dm0_A          444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD  518 (694)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred             EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence            99999999999999999987655   5789999999999999999  7999999999999997655443332   46899


Q ss_pred             CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      .|.+++|+++.....|++++.|++|++||+++......+..|...|.+++|+|++                     ++|+
T Consensus       519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg---------------------~~l~  577 (694)
T 3dm0_A          519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG---------------------SLCA  577 (694)
T ss_dssp             CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------SEEE
T ss_pred             cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC---------------------CEEE
Confidence            9999999776555789999999999999999877776666666656555555554                     5799


Q ss_pred             EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311          579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                      +++.||.|++||+.+++.+..+..+   ..+.+++|+|++.+|++++ ++.|++||+.++ ..+..+.
T Consensus       578 sg~~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~  640 (694)
T 3dm0_A          578 SGGKDGVVLLWDLAEGKKLYSLEAN---SVIHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLK  640 (694)
T ss_dssp             EEETTSBCEEEETTTTEEEECCBCS---SCEEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEEC
T ss_pred             EEeCCCeEEEEECCCCceEEEecCC---CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhc
Confidence            9999999999999999988777643   3589999999999888776 566999999887 5544443

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=326.15  Aligned_cols=356  Identities=14%  Similarity=0.158  Sum_probs=247.2

Q ss_pred             CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCceeeeE
Q 001311          368 VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQH  446 (1102)
Q Consensus       368 d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~  446 (1102)
                      ++.++||++.+++...                   ++.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++.....
T Consensus        22 ~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~   82 (408)
T 4a11_B           22 ESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY   82 (408)
T ss_dssp             HHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE
T ss_pred             cCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE
Confidence            4567788876665544                   4788999999999999 9999999999999999999988765432


Q ss_pred             EEe----------eccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC-CccEE
Q 001311          447 LEI----------DAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFI  514 (1102)
Q Consensus       447 ~~l----------~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l  514 (1102)
                      ...          .+|...|.+++|+| ++.  +|++++.|+.|++||+.+++.+..+. +...+.++.+.+.. ++.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  159 (408)
T 4a11_B           83 TCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLV  159 (408)
T ss_dssp             EECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEE
T ss_pred             eccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEE
Confidence            111          25999999999999 555  79999999999999999999998887 77889988886543 45699


Q ss_pred             EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc
Q 001311          515 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV  594 (1102)
Q Consensus       515 ~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  594 (1102)
                      ++++.||.|++||+.++.....+..+...|.+++|+|++.                    ..+++++.||.|++||++++
T Consensus       160 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          160 AVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--------------------YILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             EEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCT--------------------TEEEEEETTSCEEEEETTCS
T ss_pred             EEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCC--------------------cEEEEEcCCCcEEEEECCCC
Confidence            9999999999999998888877777777777777766664                    25889999999999999877


Q ss_pred             c-eEEEEcC-------------CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          595 Q-LLTSIDA-------------DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       595 ~-~~~~~~~-------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      . .+..+..             ..+...|.+++|+|++++|++++.||.|++||+.++.. ......+....        
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~--------  290 (408)
T 4a11_B          220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN-TLVNYGKVCNN--------  290 (408)
T ss_dssp             SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB-CCCCCCCCCCC--------
T ss_pred             CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc-ceecccccccc--------
Confidence            5 4444421             23345789999999999999999999999999987722 11111000000        


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                                   .  
T Consensus       291 -----------------------------------------------------------------------------~--  291 (408)
T 4a11_B          291 -----------------------------------------------------------------------------S--  291 (408)
T ss_dssp             -----------------------------------------------------------------------------C--
T ss_pred             -----------------------------------------------------------------------------c--
Confidence                                                                                         0  


Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  820 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~  820 (1102)
                                                                                      ...............+
T Consensus       292 ----------------------------------------------------------------~~~~~~~~~~~~~~~~  307 (408)
T 4a11_B          292 ----------------------------------------------------------------KKGLKFTVSCGCSSEF  307 (408)
T ss_dssp             ----------------------------------------------------------------SSCCCCEECCSSSSCE
T ss_pred             ----------------------------------------------------------------cccceeEEecCCCceE
Confidence                                                                            0000011111223344


Q ss_pred             EEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEec
Q 001311          821 VMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH  900 (1102)
Q Consensus       821 las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~  900 (1102)
                      ++++.++.|++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+...   ..+.+
T Consensus       308 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~  383 (408)
T 4a11_B          308 VFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNP  383 (408)
T ss_dssp             EEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC---------------------
T ss_pred             EEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---ccccc
Confidence            5555599999999999999999999999999999999 8999999999999999999998877655443322   22333


Q ss_pred             -CCCEEEEEcCCCcEEEEEcCC
Q 001311          901 -ALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       901 -d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                       +...+.+.+.|+.+++|+...
T Consensus       384 ~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          384 AFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             ----------------------
T ss_pred             ccceeecccCccCceeecCCcc
Confidence             334556677889999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=8.7e-35  Score=329.60  Aligned_cols=317  Identities=14%  Similarity=0.195  Sum_probs=221.0

Q ss_pred             ccCCCCCCeEEEEEccC----CCeEEEEECCCeEEEEEccCCceeeeEEEee--ccccCEEEEEEcCC----CCeeEEEE
Q 001311          403 LVKDPGVSVNRVIWSPD----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEID--AHVGGVNDIAFSHP----NKQLCVIT  472 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spd----g~~las~~~d~~v~vwd~~~~~~~~~~~~l~--~h~~~V~~v~~s~d----~~~~~l~s  472 (1102)
                      +..+|.+.|.+++|+|+    ...+++++.++.|+|||+.+++.+.....+.  .|...|.+++|+|+    +.  +|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence            56799999999999994    5566677777799999999887766544333  26788999999999    55  7999


Q ss_pred             ecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee---cCCCCeeeEEEE
Q 001311          473 CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAY  549 (1102)
Q Consensus       473 ~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~  549 (1102)
                      |+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++++....+   ..+...      
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~------  163 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE------  163 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC------
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc------
Confidence            999999999999999999999999999999998641 5579999999999999999875544433   222222      


Q ss_pred             ccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001311          550 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  629 (1102)
Q Consensus       550 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  629 (1102)
                                                                                 |.+++|+|++.+|++++.||.
T Consensus       164 -----------------------------------------------------------v~~~~~~~~~~~l~~~~~dg~  184 (366)
T 3k26_A          164 -----------------------------------------------------------VLSADYDLLGEKIMSCGMDHS  184 (366)
T ss_dssp             -----------------------------------------------------------EEEEEECTTSSEEEEEETTSC
T ss_pred             -----------------------------------------------------------eeEEEECCCCCEEEEecCCCC
Confidence                                                                       334444444444444444555


Q ss_pred             EEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCcccccc
Q 001311          630 IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEE  709 (1102)
Q Consensus       630 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  709 (1102)
                      |++||+.++ +....+....            .+.+.                                   +..+....
T Consensus       185 i~i~d~~~~-~~~~~~~~~~------------~~~~~-----------------------------------~~~~~~~~  216 (366)
T 3k26_A          185 LKLWRINSK-RMMNAIKESY------------DYNPN-----------------------------------KTNRPFIS  216 (366)
T ss_dssp             EEEEESCSH-HHHHHHHHHH------------TCCGG-----------------------------------GCSSCCCC
T ss_pred             EEEEECCCC-ccccccceeE------------EecCC-----------------------------------CCcccccc
Confidence            555554433 1111111000            00000                                   00000000


Q ss_pred             CCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceecc
Q 001311          710 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  789 (1102)
Q Consensus       710 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~  789 (1102)
                      ......                                                 .+..                     
T Consensus       217 ~~~~~~-------------------------------------------------~~~~---------------------  226 (366)
T 3k26_A          217 QKIHFP-------------------------------------------------DFST---------------------  226 (366)
T ss_dssp             EEECCC-------------------------------------------------SEEE---------------------
T ss_pred             eeeccC-------------------------------------------------cccc---------------------
Confidence            000000                                                 0000                     


Q ss_pred             CCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce--------------eeeecCCCCCeeEEE
Q 001311          790 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT--------------MATFMPPPPAATFLA  854 (1102)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~--------------~~~~~~~~~~i~~l~  854 (1102)
                                .  ..|...|.+++|+  ++++++++ |+.|++||+.++..              +..+..|...|.+++
T Consensus       227 ----------~--~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  292 (366)
T 3k26_A          227 ----------R--DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMR  292 (366)
T ss_dssp             ----------C--SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCC
T ss_pred             ----------c--cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEE
Confidence                      0  1155566666666  45666666 66666776665433              667788999999999


Q ss_pred             EecCC--CcEEEEEeCCCcEEEEEeecceee----eeeccc--cccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          855 FHPQD--NNIIAIGMDDSSIQIYNVRVDEVK----SKLKGH--SKRITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       855 ~sp~d--~~~lasg~~dg~v~vwd~~~~~~~----~~l~~h--~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      |+| +  +++|++|+.||.|++||+.+++..    ..+.+|  ...|++++|+|++++|++++.||.|++||+.
T Consensus       293 ~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          293 FSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            999 8  999999999999999999987543    477777  7999999999999999999999999999985

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=4.2e-33  Score=343.75  Aligned_cols=211  Identities=18%  Similarity=0.295  Sum_probs=175.4

Q ss_pred             ccCCCCCCeEEEEEccC-CCeEEEEECCCeEEEEEccCCcee--eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE
Q 001311          403 LVKDPGVSVNRVIWSPD-GSLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI  479 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spd-g~~las~~~d~~v~vwd~~~~~~~--~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i  479 (1102)
                      .+.+|.+.|++++|+|+ +++|++|+.|++|+|||+.++...  .....+.+|...|.+++|+|+++  +|++|+.|++|
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v  454 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL  454 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence            47899999999999996 579999999999999999865321  22346889999999999999999  89999999999


Q ss_pred             EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee---cCCCCeeeEEEEccCCcee
Q 001311          480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRT  556 (1102)
Q Consensus       480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~  556 (1102)
                      +|||+.+++++..+.+|...|.+++|+  +++.+|++|+.|++|++||..........   ..|...|.+++|+|++.  
T Consensus       455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--  530 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGHTKDVLSVAFS--LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL--  530 (694)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS--
T ss_pred             EEEECCCCcceeEEeCCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC--
Confidence            999999999999999999999999985  55689999999999999997643221111   22333444444444431  


Q ss_pred             eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311          557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                                       ...+++++.|+.|++||+.+++....+..|..  .|.+++|+|++++|++++.||.|++||+.
T Consensus       531 -----------------~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          531 -----------------QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             -----------------SCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             -----------------cceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence                             15799999999999999999999988886644  79999999999999999999999999987


Q ss_pred             CC
Q 001311          637 DG  638 (1102)
Q Consensus       637 ~~  638 (1102)
                      ++
T Consensus       592 ~~  593 (694)
T 3dm0_A          592 EG  593 (694)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.9e-33  Score=319.17  Aligned_cols=301  Identities=15%  Similarity=0.199  Sum_probs=243.8

Q ss_pred             eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe------eeEEeecCCCCeEEEeeeec--CCc---cE
Q 001311          445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA------KQYIFEGHEAPVYSVCPHHK--ENI---QF  513 (1102)
Q Consensus       445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~------~~~~~~~h~~~v~~v~~~~~--~~~---~~  513 (1102)
                      ....+.+|.+.|++++|+|  +  +|++|+.||.|++||+.+++      .+..+.+|...|.+++|+++  .++   .+
T Consensus         8 ~~~~~~~h~~~i~~~~~~~--~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            8 TANAGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhcCeEEEEecC--C--eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            3445789999999999998  5  79999999999999999988      78899999999999999754  236   79


Q ss_pred             EEEEeCCCeEEEEEcCCCCC-----eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc----CCCCE-EEEEeCC
Q 001311          514 IFSTALDGKIKAWLYDNLGS-----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD----TTKNR-FLAAGDD  583 (1102)
Q Consensus       514 l~s~s~dg~i~~wd~~~~~~-----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~----~~~~~-l~~~~~d  583 (1102)
                      |++++.||.|++||+.+...     ...+..+...                .....+.+++|+    |++++ |++++.|
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~d  147 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSD----------------MKKHSFWALKWGASNDRLLSHRLVATDVK  147 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTT----------------GGGSCEEEEEEECCC----CEEEEEEETT
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccc----------------cCCCcEEEEEEeeccCCCCceEEEEEeCC
Confidence            99999999999999988665     4444433100                002355666666    66678 9999999


Q ss_pred             CeEEEEECCC------cceEE-----EEcC-----CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccc
Q 001311          584 FSIKFWDMDS------VQLLT-----SIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       584 g~i~iwd~~~------~~~~~-----~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                      |.|++||+.+      ++.+.     .+..     ..+...+.+++|+|++ +|++++.||.|++||+.++ +.+..+..
T Consensus       148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~-~~~~~~~~  225 (397)
T 1sq9_A          148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFES  225 (397)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEEC
T ss_pred             CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCC-ceeEEEec
Confidence            9999999998      76665     6643     3345579999999999 9999999999999998765 22211110


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311          648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  727 (1102)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~  727 (1102)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (397)
T 1sq9_A          226 --------------------------------------------------------------------------------  225 (397)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC--
Q 001311          728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP--  805 (1102)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--  805 (1102)
                                                                                              .  .+|  
T Consensus       226 ------------------------------------------------------------------------~--~~h~~  231 (397)
T 1sq9_A          226 ------------------------------------------------------------------------Q--HSMIN  231 (397)
T ss_dssp             ------------------------------------------------------------------------C--C---C
T ss_pred             ------------------------------------------------------------------------c--ccccc
Confidence                                                                                    0  003  


Q ss_pred             -CCCeeEEEEecCCCeEEEEe-C---CeEEEEEcCCCceeeeecC-------------CCCCeeEEEEecCCCcEEEEEe
Q 001311          806 -EEAVPCFALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMP-------------PPPAATFLAFHPQDNNIIAIGM  867 (1102)
Q Consensus       806 -~~~i~~l~~s~d~~~las~s-d---g~I~iwd~~~~~~~~~~~~-------------~~~~i~~l~~sp~d~~~lasg~  867 (1102)
                       ...|.+++|+|++++|++++ |   +.|++||+.+++.+..+.+             |...|.+++|+| ++++|++|+
T Consensus       232 ~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~  310 (397)
T 1sq9_A          232 NSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAG  310 (397)
T ss_dssp             CCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEE
T ss_pred             cCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEe
Confidence             56678888888888888887 7   7889999888888888887             999999999999 899999999


Q ss_pred             CCCcEEEEEeecceeeeeec------cc---------------cccceeEEEecCC----------CEEEEEcCCCcEEE
Q 001311          868 DDSSIQIYNVRVDEVKSKLK------GH---------------SKRITGLAFSHAL----------NVLVSSGADSQLCV  916 (1102)
Q Consensus       868 ~dg~v~vwd~~~~~~~~~l~------~h---------------~~~V~~l~~s~d~----------~~l~s~s~Dg~i~v  916 (1102)
                      .||.|++||+.+++.+..+.      +|               ...|++++|+|++          ++|++++.||.|++
T Consensus       311 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~i  390 (397)
T 1sq9_A          311 WDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRW  390 (397)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEE
T ss_pred             CCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEE
Confidence            99999999999999999998      88               9999999999998          79999999999999


Q ss_pred             EEcCCC
Q 001311          917 WSSDGW  922 (1102)
Q Consensus       917 wd~~~~  922 (1102)
                      |++.++
T Consensus       391 w~~~~g  396 (397)
T 1sq9_A          391 FREAGG  396 (397)
T ss_dssp             EEEEC-
T ss_pred             EEcCCC
Confidence            999875

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.5e-33  Score=316.91  Aligned_cols=302  Identities=12%  Similarity=0.120  Sum_probs=235.1

Q ss_pred             ccCCCCCCeEEEEEccCC-CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEE
Q 001311          403 LVKDPGVSVNRVIWSPDG-SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIK  480 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg-~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~  480 (1102)
                      .+.+|.+.|.+++|+|++ ++||+|+.||.|+|||+.+++.... ..+.+|...|.+++|+| ++.  +|++++.|+.|+
T Consensus        68 ~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~--~l~s~~~d~~i~  144 (383)
T 3ei3_B           68 TASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-IQGMGPGDAITGMKFNQFNTN--QLFVSSIRGATT  144 (383)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-ECCCSTTCBEEEEEEETTEEE--EEEEEETTTEEE
T ss_pred             eccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-eecCCcCCceeEEEeCCCCCC--EEEEEeCCCEEE
Confidence            478999999999999999 9999999999999999998876542 23457999999999999 556  799999999999


Q ss_pred             EEeCCCCeeeEEeecC---CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311          481 VWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       481 vWd~~~~~~~~~~~~h---~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      +||+.+ ..+..+..|   ...|.+++|+  +++.+|++++.|+.|++||++ .+....+..|...|.+++|+|++.   
T Consensus       145 iwd~~~-~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~---  217 (383)
T 3ei3_B          145 LRDFSG-SVIQVFAKTDSWDYWYCCVDVS--VSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD---  217 (383)
T ss_dssp             EEETTS-CEEEEEECCCCSSCCEEEEEEE--TTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT---
T ss_pred             EEECCC-CceEEEeccCCCCCCeEEEEEC--CCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC---
Confidence            999985 555666544   4889999985  456899999999999999994 455555666655555555555543   


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC----cceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEE
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS----VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i  632 (1102)
                                       .++++++.|+.|++||+.+    +..+..+. +  ...|.+++|+| ++.+|++++.|+.|++
T Consensus       218 -----------------~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~--~~~v~~~~~s~~~~~~l~~~~~d~~i~i  277 (383)
T 3ei3_B          218 -----------------WLMATSSVDATVKLWDLRNIKDKNSYIAEMP-H--EKPVNAAYFNPTDSTKLLTTDQRNEIRV  277 (383)
T ss_dssp             -----------------TEEEEEETTSEEEEEEGGGCCSTTCEEEEEE-C--SSCEEEEEECTTTSCEEEEEESSSEEEE
T ss_pred             -----------------CEEEEEeCCCEEEEEeCCCCCcccceEEEec-C--CCceEEEEEcCCCCCEEEEEcCCCcEEE
Confidence                             2799999999999999987    66666663 3  44799999999 9999999999999999


Q ss_pred             EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311          633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  712 (1102)
Q Consensus       633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  712 (1102)
                      ||+.++ .....+.+|....                                                            
T Consensus       278 wd~~~~-~~~~~~~~~~~~~------------------------------------------------------------  296 (383)
T 3ei3_B          278 YSSYDW-SKPDQIIIHPHRQ------------------------------------------------------------  296 (383)
T ss_dssp             EETTBT-TSCSEEEECCBCC------------------------------------------------------------
T ss_pred             EECCCC-ccccccccccccc------------------------------------------------------------
Confidence            999887 3333333322110                                                            


Q ss_pred             ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311          713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  792 (1102)
Q Consensus       713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~  792 (1102)
                                             ..|...+. +.|+|++                                         
T Consensus       297 -----------------------~~~~~~~~-~~~~p~~-----------------------------------------  311 (383)
T 3ei3_B          297 -----------------------FQHLTPIK-ATWHPMY-----------------------------------------  311 (383)
T ss_dssp             -----------------------CTTSCCCC-CEECSSS-----------------------------------------
T ss_pred             -----------------------cccccceE-EeccCCC-----------------------------------------
Confidence                                   00112222 2344333                                         


Q ss_pred             ccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC--CCCCeeEEEEecCCCcEEEEEeCC
Q 001311          793 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--PPPAATFLAFHPQDNNIIAIGMDD  869 (1102)
Q Consensus       793 ~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~--~~~~i~~l~~sp~d~~~lasg~~d  869 (1102)
                                     .+..++++||+++  +++ |+.|++||+.+++.+..+.+  |...+.+++|+| ++++|++|+ |
T Consensus       312 ---------------~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~s-d  372 (383)
T 3ei3_B          312 ---------------DLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASGM-G  372 (383)
T ss_dssp             ---------------SEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEEE-T
T ss_pred             ---------------CceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEec-C
Confidence                           3456778889988  666 89999999999999999987  456788889999 999999997 9


Q ss_pred             CcEEEEEeec
Q 001311          870 SSIQIYNVRV  879 (1102)
Q Consensus       870 g~v~vwd~~~  879 (1102)
                      |.|+|||+.+
T Consensus       373 ~~i~iw~~~~  382 (383)
T 3ei3_B          373 FNILIWNRED  382 (383)
T ss_dssp             TEEEEEECC-
T ss_pred             CcEEEEecCC
Confidence            9999999864

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-32  Score=308.89  Aligned_cols=306  Identities=11%  Similarity=0.115  Sum_probs=241.2

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      .+...+.+|.+.|++++|+|+|++ |++|+.||.|+|||+.+++.+.                   .+.+|.+.|.+++|
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~   82 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDV   82 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEE
Confidence            445556779999999999999995 9999999999999999988776                   37889999999999


Q ss_pred             ccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC-----CcEEEEeCCCCe---
Q 001311          417 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-----KTIKVWDATNGA---  488 (1102)
Q Consensus       417 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-----~~i~vWd~~~~~---  488 (1102)
                      +|++++|++++.|+.|++||+.+++.+..   +. |...|.+++|+|+++  ++++++.+     +.|++||+.++.   
T Consensus        83 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~  156 (369)
T 3zwl_B           83 DCFTKYCVTGSADYSIKLWDVSNGQCVAT---WK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATH  156 (369)
T ss_dssp             CTTSSEEEEEETTTEEEEEETTTCCEEEE---EE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred             cCCCCEEEEEeCCCeEEEEECCCCcEEEE---ee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccce
Confidence            99999999999999999999999887653   33 889999999999999  78888888     999999998764   


Q ss_pred             --------eeEEeecCCC--CeEEEeeeecCCccEEEEEeCCCeEEEEEcCC-CCCeeeecCCCCeeeEEEEccCCceee
Q 001311          489 --------KQYIFEGHEA--PVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       489 --------~~~~~~~h~~--~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                              .+..+..|.+  .+.+++|++  ++.+|++++.||.|++||+.+ ......+..+...+.+           
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~-----------  223 (369)
T 3zwl_B          157 ELTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISD-----------  223 (369)
T ss_dssp             CEEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEE-----------
T ss_pred             eecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeE-----------
Confidence                    3455666766  899999854  567999999999999999987 4444455555544444           


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                                ++|+|++++|++++.|+.|++||+.+++.+..+...   ..+.+++|+|+++++++++.++.+.+|....
T Consensus       224 ----------~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  290 (369)
T 3zwl_B          224 ----------MQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSA  290 (369)
T ss_dssp             ----------EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECCC---------
T ss_pred             ----------EEECCCCCEEEEecCCceEEEEECCCCceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEec
Confidence                      455555568999999999999999999998888733   3589999999999999999998655554322


Q ss_pred             CccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceE
Q 001311          638 GIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVW  717 (1102)
Q Consensus       638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w  717 (1102)
                      ..                                                                      ....+++|
T Consensus       291 ~~----------------------------------------------------------------------~~~~i~~~  300 (369)
T 3zwl_B          291 NE----------------------------------------------------------------------GKFEARFY  300 (369)
T ss_dssp             --------------------------------------------------------------------------CEEEEE
T ss_pred             CC----------------------------------------------------------------------CcceeEEE
Confidence            10                                                                      01245555


Q ss_pred             ecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeecccc
Q 001311          718 KLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRT  771 (1102)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  771 (1102)
                      +..........       .+|...|.+++|+|++++|++++.||.|++|++...
T Consensus       301 d~~~~~~~~~~-------~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          301 HKIFEEEIGRV-------QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             ETTTCCEEEEE-------ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred             ecCCCcchhhe-------ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence            55432211111       237789999999999999999999999999998654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.5e-33  Score=326.92  Aligned_cols=241  Identities=15%  Similarity=0.235  Sum_probs=189.1

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DG  420 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg  420 (1102)
                      ..+|...|+||+|+|....+||+|+.||+|+|||+.+++.....                 .+.+|.+.|++|+|+| |+
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f~p~~~  177 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKFNPLNT  177 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEECSSCT
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEEeCCCC
Confidence            34588999999999965557999999999999999877543321                 3578999999999998 78


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      ++|++|+.||+|+|||++++.. ........+...+.+++|+++++  +|++|+.||.|++||++ ++.+..+.+|...|
T Consensus       178 ~~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v  253 (435)
T 4e54_B          178 NQFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKV  253 (435)
T ss_dssp             TEEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCE
T ss_pred             CEEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceE
Confidence            9999999999999999987643 32222233455688999999999  89999999999999975 56778899999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee---cCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY---EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      .+++|++..+ .+|++|+.|+.|++||+++......+   ..|..                     .+.+++|+|++++|
T Consensus       254 ~~v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~---------------------~v~~~~~spdg~~l  311 (435)
T 4e54_B          254 THVALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRH---------------------PVNAACFSPDGARL  311 (435)
T ss_dssp             EEEEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSS---------------------CEEECCBCTTSSEE
T ss_pred             EeeeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccc---------------------cccceeECCCCCee
Confidence            9999975443 58899999999999999876544322   23333                     45555566666789


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEcCCCCC----CCcCeEEEcCCCCEEEEEE
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSIDADGGL----PASPRIRFNKDGCLLAVST  625 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~~~  625 (1102)
                      ++++.||.|++||+.++.....+..+...    ..+..+.|+|++..++++.
T Consensus       312 ~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (435)
T 4e54_B          312 LTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGR  363 (435)
T ss_dssp             EEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEEC
T ss_pred             EEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEE
Confidence            99999999999999999888877655321    1234567888887777664

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=7.9e-34  Score=329.24  Aligned_cols=310  Identities=13%  Similarity=0.121  Sum_probs=227.6

Q ss_pred             cCCCCCCeEEEEEcc-CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEE
Q 001311          404 VKDPGVSVNRVIWSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       404 ~~~h~~~V~~l~~sp-dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~v  481 (1102)
                      ..+|...|+||+|+| ++++||+|+.||+|+|||+.+++... ...+.+|.+.|++|+|+| ++.  +|+||+.|++|++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~-~~~~~gH~~~V~~l~f~p~~~~--~l~s~s~D~~v~i  191 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPT-FIKGIGAGGSITGLKFNPLNTN--QFYASSMEGTTRL  191 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCE-EECCCSSSCCCCEEEECSSCTT--EEEEECSSSCEEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCcee-EEEccCCCCCEEEEEEeCCCCC--EEEEEeCCCEEEE
Confidence            456888999999999 67899999999999999998876432 335678999999999998 566  7999999999999


Q ss_pred             EeCCCCeeeEEeecCC--CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          482 WDATNGAKQYIFEGHE--APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~--~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      ||++++........|.  ..+.+++|  ++++.+|++|+.||.|++||++. +.+..+..|...|.+++|+|++.     
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~-----  263 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDV--SASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD-----  263 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEE--ETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS-----
T ss_pred             eeccCCceeEEeccCCCCccEEEEEE--CCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc-----
Confidence            9998766544444333  34566666  56678999999999999999874 45556677777777777777665     


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                                     .++++++.|+.|++||+.+.+....+. ...+...|.+++|+|+|.+|++++.||.|++||+.++
T Consensus       264 ---------------~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~  328 (435)
T 4e54_B          264 ---------------WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW  328 (435)
T ss_dssp             ---------------SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred             ---------------eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence                           468899999999999998876544332 2234557999999999999999999999999999887


Q ss_pred             ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEe
Q 001311          639 IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWK  718 (1102)
Q Consensus       639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~  718 (1102)
                       .....+..|.....                                                                 
T Consensus       329 -~~~~~~~~~~~~~~-----------------------------------------------------------------  342 (435)
T 4e54_B          329 -DCPLGLIPHPHRHF-----------------------------------------------------------------  342 (435)
T ss_dssp             -SSEEEECCCCCCCC-----------------------------------------------------------------
T ss_pred             -ccceEEeccccccc-----------------------------------------------------------------
Confidence             33333322221100                                                                 


Q ss_pred             cccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc
Q 001311          719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN  798 (1102)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~  798 (1102)
                                         ....+....|+|++..++++                                         
T Consensus       343 -------------------~~~~~~~~~~~~~~~~~~~~-----------------------------------------  362 (435)
T 4e54_B          343 -------------------QHLTPIKAAWHPRYNLIVVG-----------------------------------------  362 (435)
T ss_dssp             -------------------SSSCCCBCEECSSSSCEEEE-----------------------------------------
T ss_pred             -------------------ccceeEEEEEcCCCCEEEEE-----------------------------------------
Confidence                               00111123445555444333                                         


Q ss_pred             ccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeec-CCCCCeeEE-EEecCCCcEEEEEeCCCcEEE
Q 001311          799 DVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFL-AFHPQDNNIIAIGMDDSSIQI  874 (1102)
Q Consensus       799 ~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~-~~~~~i~~l-~~sp~d~~~lasg~~dg~v~v  874 (1102)
                                     +++++..++++.  ++.|++||..+++.+..+. +|...|.++ +|+| ++++||+|+ |+.|+|
T Consensus       363 ---------------~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~~i~i  425 (435)
T 4e54_B          363 ---------------RYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GYHILI  425 (435)
T ss_dssp             ---------------CCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SSEEEE
T ss_pred             ---------------EcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CCcEEE
Confidence                           333444444333  4679999999999888764 677888887 6999 899999876 889999


Q ss_pred             EEeeccee
Q 001311          875 YNVRVDEV  882 (1102)
Q Consensus       875 wd~~~~~~  882 (1102)
                      ||+++++.
T Consensus       426 W~~~~gk~  433 (435)
T 4e54_B          426 WSQQEART  433 (435)
T ss_dssp             CCCC----
T ss_pred             EECCcCee
Confidence            99998765

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=321.31  Aligned_cols=362  Identities=12%  Similarity=0.155  Sum_probs=248.0

Q ss_pred             CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          582 DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       582 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      .++.+++|++..++....+..|.  ..|.+++|+| ++++|++++.||.|++||+.++. ....+......         
T Consensus        21 ~~~~~~v~~~~~~~~~~~~~~h~--~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~---------   88 (408)
T 4a11_B           21 AESTRRVLGLELNKDRDVERIHG--GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS-RQSYYTCKAVC---------   88 (408)
T ss_dssp             HHHHHHHHTEEECTTEEECCCCS--SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS-SSSCEEECEEE---------
T ss_pred             ccCcceeeccccCcceeeeeccC--CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc-ccceEeccccc---------
Confidence            35567888888888887777654  4899999999 99999999999999999998762 22111100000         


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                               ...           .....+|..
T Consensus        89 ---------------------------------------------------------~~~-----------~~~~~~~~~  100 (408)
T 4a11_B           89 ---------------------------------------------------------SIG-----------RDHPDVHRY  100 (408)
T ss_dssp             ---------------------------------------------------------EEC-----------TTCTTCCSS
T ss_pred             ---------------------------------------------------------ccc-----------ccccccCCC
Confidence                                                                     000           000023788


Q ss_pred             ceEEEEEcc-CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC--
Q 001311          741 KISRLIFTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN--  817 (1102)
Q Consensus       741 ~i~~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d--  817 (1102)
                      .|.+++|+| ++..+++++.|+.|++|++..                      +......    .+...+.++++++.  
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------~~~~~~~----~~~~~~~~~~~~~~~~  154 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNT----------------------LQTADVF----NFEETVYSHHMSPVST  154 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTT----------------------TEEEEEE----ECSSCEEEEEECSSCS
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCC----------------------Cccceec----cCCCceeeeEeecCCC
Confidence            999999999 778999999999999998743                      2211111    15677899999885  


Q ss_pred             -CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-EEEEEeCCCcEEEEEeecce-eeeee-------
Q 001311          818 -DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDE-VKSKL-------  886 (1102)
Q Consensus       818 -~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~~-~~~~l-------  886 (1102)
                       +.++++++ |+.|++||+.+++.+..+.+|...|++++|+| ++. +|++|+.||.|++||+.++. .+..+       
T Consensus       155 ~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  233 (408)
T 4a11_B          155 KHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKK  233 (408)
T ss_dssp             SCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCS
T ss_pred             CCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEEcCCCcEEEEECCCCCccccccccccccc
Confidence             44899888 89999999999999999999999999999999 666 69999999999999997754 33333       


Q ss_pred             --------ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311          887 --------KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  958 (1102)
Q Consensus       887 --------~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  958 (1102)
                              .+|...|.+++|+|++++|++++.|+.|++||+.+++.............  .............+.+++++
T Consensus       234 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  311 (408)
T 4a11_B          234 SQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNS--KKGLKFTVSCGCSSEFVFVP  311 (408)
T ss_dssp             CCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCC--SSCCCCEECCSSSSCEEEEE
T ss_pred             ceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccc--cccceeEEecCCCceEEEEe
Confidence                    57899999999999999999999999999999998764322111111110  01122333344456666668


Q ss_pred             eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccc
Q 001311          959 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1038 (1102)
Q Consensus       959 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 1038 (1102)
                      .++.|++||+.+++.+..+.  +|...|++++|+||+++|++++.||.|++||+.+++.+......           .. 
T Consensus       312 ~~~~i~v~d~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-----------~~-  377 (408)
T 4a11_B          312 YGSTIAVYTVYSGEQITMLK--GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDET-----------TT-  377 (408)
T ss_dssp             ETTEEEEEETTTCCEEEEEC--CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC------------------------
T ss_pred             cCCEEEEEECcCCcceeeec--cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCce-----------Ee-
Confidence            99999999999999998876  78999999999999999999999999999999999887654410           01 


Q ss_pred             eEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1039 LVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1039 ~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                       ...+.+.+...+.+.+.|+.+++|+...
T Consensus       378 -~~~~~~~~~~~~~~~~~~~~~~~W~~~~  405 (408)
T 4a11_B          378 -KSQLNPAFEDAWSSSDEEGGTSAWSHPQ  405 (408)
T ss_dssp             -----------------------------
T ss_pred             -ccccccccceeecccCccCceeecCCcc
Confidence             1233343456677888999999998753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=8.7e-33  Score=302.29  Aligned_cols=255  Identities=16%  Similarity=0.200  Sum_probs=206.6

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCC--eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-  418 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  418 (1102)
                      ..+|.+.|++++|+|+|++ ||+|+.|++|+|||+.+.  +.+.                   .+.+|.+.|.+++|++ 
T Consensus         5 ~~~h~~~V~~~~~s~~g~~-las~s~D~~v~iw~~~~~~~~~~~-------------------~l~gH~~~V~~v~~s~~   64 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKR-MATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP   64 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEBCSSCBCCCE-------------------EECCCSSCEEEEEECCG
T ss_pred             ccCCcCceEEEEECCCCCE-EEEEeCCCEEEEEecCCCCcEEEE-------------------EEccccCCeEEEEecCC
Confidence            4569999999999999996 999999999999999753  3332                   4789999999999987 


Q ss_pred             -CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCe--eeEEe
Q 001311          419 -DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF  493 (1102)
Q Consensus       419 -dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~  493 (1102)
                       ++++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+  +.  +|++++.|++|++||++++.  ....+
T Consensus        65 ~~g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~  141 (297)
T 2pm7_B           65 KFGTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIII  141 (297)
T ss_dssp             GGCSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred             CcCCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeee
Confidence             4899999999999999999987522 22357789999999999998  67  79999999999999998764  24677


Q ss_pred             ecCCCCeEEEeeeecC-----------CccEEEEEeCCCeEEEEEcCCCC----CeeeecCCCCeeeEEEEccCCceeee
Q 001311          494 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLG----SRVDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       494 ~~h~~~v~~v~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      .+|...|.+++|++..           ++.+|++|+.|++|++||+++..    ....+..|...|.+++|+|++.    
T Consensus       142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~----  217 (297)
T 2pm7_B          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL----  217 (297)
T ss_dssp             ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS----
T ss_pred             ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCC----
Confidence            8999999999997642           25799999999999999998765    3345566666666666666541    


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc---eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                                    .+.+|++++.|++|++||+.++.   ....+....+...|.+++|+|++++|++++.||.|++|+.
T Consensus       218 --------------~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~  283 (297)
T 2pm7_B          218 --------------LRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKE  283 (297)
T ss_dssp             --------------SSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred             --------------CceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEE
Confidence                          02579999999999999998753   1223322344557899999999999999999999999997


Q ss_pred             cC
Q 001311          636 SD  637 (1102)
Q Consensus       636 ~~  637 (1102)
                      ..
T Consensus       284 ~~  285 (297)
T 2pm7_B          284 NL  285 (297)
T ss_dssp             CT
T ss_pred             CC
Confidence            53

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=6.6e-33  Score=316.25  Aligned_cols=308  Identities=12%  Similarity=0.175  Sum_probs=240.4

Q ss_pred             EEECCCcceEEEEcCCCCCCCcCeEEEcCCC-CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccc
Q 001311          588 FWDMDSVQLLTSIDADGGLPASPRIRFNKDG-CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  666 (1102)
Q Consensus       588 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1102)
                      +|++...+....+..|.  ..|.+++|+|++ ++|++++.||.|++||+.++ .....+..                   
T Consensus        57 ~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~-------------------  114 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFD--RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-NKTSFIQG-------------------  114 (383)
T ss_dssp             HHHHTTCEEEEEECCCS--SCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-TCEEEECC-------------------
T ss_pred             cccccccceEEeccCCC--CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-ccceeeec-------------------
Confidence            34445566666776554  479999999999 99999999999999998766 22111100                   


Q ss_pred             hhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEE
Q 001311          667 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI  746 (1102)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  746 (1102)
                                                                                           .+|...|.+++
T Consensus       115 ---------------------------------------------------------------------~~h~~~v~~~~  125 (383)
T 3ei3_B          115 ---------------------------------------------------------------------MGPGDAITGMK  125 (383)
T ss_dssp             ---------------------------------------------------------------------CSTTCBEEEEE
T ss_pred             ---------------------------------------------------------------------CCcCCceeEEE
Confidence                                                                                 13778999999


Q ss_pred             Ecc-CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe
Q 001311          747 FTN-SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS  825 (1102)
Q Consensus       747 ~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s  825 (1102)
                      |+| +++.+++++.|+.|++||+...                       ..........+...|.+++|+|++++|++++
T Consensus       126 ~~~~~~~~l~s~~~d~~i~iwd~~~~-----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  182 (383)
T 3ei3_B          126 FNQFNTNQLFVSSIRGATTLRDFSGS-----------------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGD  182 (383)
T ss_dssp             EETTEEEEEEEEETTTEEEEEETTSC-----------------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEE
T ss_pred             eCCCCCCEEEEEeCCCEEEEEECCCC-----------------------ceEEEeccCCCCCCeEEEEECCCCCEEEEEC
Confidence            999 7899999999999999997421                       1111111122568899999999999999999


Q ss_pred             -CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc-EEEEEeCCCcEEEEEeec----ceeeeeeccccccceeEEEe
Q 001311          826 -GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRV----DEVKSKLKGHSKRITGLAFS  899 (1102)
Q Consensus       826 -dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~----~~~~~~l~~h~~~V~~l~~s  899 (1102)
                       |+.|++||+ +++.+..+.+|...|.+++|+| +++ +|++|+.|+.|++||+.+    +.++..+ +|...|++++|+
T Consensus       183 ~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s  259 (383)
T 3ei3_B          183 STGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFN  259 (383)
T ss_dssp             TTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEEC
T ss_pred             CCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEc
Confidence             999999999 5788889999999999999999 777 999999999999999998    5666666 699999999999


Q ss_pred             c-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecC--CCCCC-------CCCCCcEEEEccCCcEEEEEeCCeEEEEEcC
Q 001311          900 H-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--TGRTP-------TAQSDTRVQFHQDQIHFLVVHETQLAIFETT  969 (1102)
Q Consensus       900 ~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--~~~~~-------~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~  969 (1102)
                      | ++++|++++.|+.|++||+.+++..........  ..+..       +...+..++|+|+|++ ..+.|+.|++||+.
T Consensus       260 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~-s~s~d~~i~iwd~~  338 (383)
T 3ei3_B          260 PTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL-LLNDKRTIDIYDAN  338 (383)
T ss_dssp             TTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT-CTTCCCCEEEEETT
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc-ccCCCCeEEEEecC
Confidence            9 999999999999999999998765332221110  01110       0012334556666665 22479999999999


Q ss_pred             CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311          970 KLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       970 ~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      +++.+..+..+.|...+..++|+||+++|++|+ ||.|+|||+++
T Consensus       339 ~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          339 SGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             TCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            999999988666788899999999999999997 99999999875

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=310.68  Aligned_cols=299  Identities=11%  Similarity=0.166  Sum_probs=235.0

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecC---CCcEEEEeCCCCeeeEEe-ecCCCCeEEEeeeecC-CccEEEEEeCCCe
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGD---DKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKE-NIQFIFSTALDGK  522 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~---d~~i~vWd~~~~~~~~~~-~~h~~~v~~v~~~~~~-~~~~l~s~s~dg~  522 (1102)
                      .+.+|...|.+++|+|++.. ++++|+.   |+.|++||+.+++..... .+|...|.+++|+++. ++.+|++++.||.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~-l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~   91 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAK-FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGN   91 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSE-EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSC
T ss_pred             hccCCCCceEEEEEcCCCce-EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCe
Confidence            46789999999999999975 5667776   999999999998876543 3799999999996542 2589999999999


Q ss_pred             EEEEEcCCCC-CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-eEEEE
Q 001311          523 IKAWLYDNLG-SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-LLTSI  600 (1102)
Q Consensus       523 i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  600 (1102)
                      |++||+.+.+ ....+..|...|.++.|.+.               ++|++++++|++++.||.|++||+.+++ .+..+
T Consensus        92 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~  156 (357)
T 3i2n_A           92 LHIWNLEAPEMPVYSVKGHKEIINAIDGIGG---------------LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANM  156 (357)
T ss_dssp             EEEECTTSCSSCSEEECCCSSCEEEEEEESG---------------GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEE
T ss_pred             EEEEeCCCCCccEEEEEecccceEEEeeccc---------------cccCCCccEEEEEeCCCeEEEEeCCCCCCcceec
Confidence            9999999887 67777778777777765432               1356677789999999999999999887 67777


Q ss_pred             cCCCC--CCCcCeEE----EcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhh
Q 001311          601 DADGG--LPASPRIR----FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA  674 (1102)
Q Consensus       601 ~~~~~--~~~v~~~~----~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1102)
                      ..+..  ...+.+++    |+|++++|++++.||.|++||+.++. ....                              
T Consensus       157 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~------------------------------  205 (357)
T 3i2n_A          157 EPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMA-LRWE------------------------------  205 (357)
T ss_dssp             CCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTE-EEEE------------------------------
T ss_pred             cccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCc-eeee------------------------------
Confidence            65433  23677787    67899999999999999999986651 1000                              


Q ss_pred             hccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceE
Q 001311          675 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  754 (1102)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  754 (1102)
                                                                                   ..                 
T Consensus       206 -------------------------------------------------------------~~-----------------  207 (357)
T 3i2n_A          206 -------------------------------------------------------------TN-----------------  207 (357)
T ss_dssp             -------------------------------------------------------------EE-----------------
T ss_pred             -------------------------------------------------------------cC-----------------
Confidence                                                                         00                 


Q ss_pred             EEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec---CCCeEEEEe-CCeEE
Q 001311          755 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK---NDSYVMSAS-GGKIS  830 (1102)
Q Consensus       755 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~---d~~~las~s-dg~I~  830 (1102)
                                                                        |...|.+++|+|   ++.++++++ ||.|+
T Consensus       208 --------------------------------------------------~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~  237 (357)
T 3i2n_A          208 --------------------------------------------------IKNGVCSLEFDRKDISMNKLVATSLEGKFH  237 (357)
T ss_dssp             --------------------------------------------------CSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred             --------------------------------------------------CCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence                                                              344566666666   666677666 67777


Q ss_pred             EEEcCCCceeeeec-----CCCCCeeEEEEecCCCc-EEEEEeCCCcEEEEEeecc-------------------eeeee
Q 001311          831 LFNMMTFKTMATFM-----PPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVD-------------------EVKSK  885 (1102)
Q Consensus       831 iwd~~~~~~~~~~~-----~~~~~i~~l~~sp~d~~-~lasg~~dg~v~vwd~~~~-------------------~~~~~  885 (1102)
                      +||+.+++....+.     +|...|++++|+| +++ +|++|+.||.|++||+.++                   +.+..
T Consensus       238 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          238 VFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             EEEEEEEETTTEEEEEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             EEeCcCCCcccceeeeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence            77776655554443     8999999999999 777 8999999999999999853                   46677


Q ss_pred             eccccccceeEEEecCCCEEE-EEcCCCcEEEEEcCCC
Q 001311          886 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGW  922 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~  922 (1102)
                      +.+|...|++++|+|++++|+ +++.|+.|++||+.+.
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred             cccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence            889999999999999999998 8999999999999874

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.9e-32  Score=309.25  Aligned_cols=322  Identities=14%  Similarity=0.180  Sum_probs=237.1

Q ss_pred             ccCCCCCCeEEEEEccCCCeEE-EEEC---CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC---CCeeEEEEecC
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFG-VAYS---RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP---NKQLCVITCGD  475 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~la-s~~~---d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d---~~~~~l~s~~~  475 (1102)
                      ++.+|.+.|.+++|+|++..++ +|+.   |+.|+|||+.+++....  ...+|...|.+++|+|+   +.  +|++|+.
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~   88 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF   88 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence            5678999999999999996555 5555   99999999999875432  23379999999999999   57  7999999


Q ss_pred             CCcEEEEeCCCCe-eeEEeecCCCCeEEEeeee----cCCccEEEEEeCCCeEEEEEcCCCC-CeeeecCCCCeeeEEEE
Q 001311          476 DKTIKVWDATNGA-KQYIFEGHEAPVYSVCPHH----KENIQFIFSTALDGKIKAWLYDNLG-SRVDYEAPGRWCTTMAY  549 (1102)
Q Consensus       476 d~~i~vWd~~~~~-~~~~~~~h~~~v~~v~~~~----~~~~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~  549 (1102)
                      |+.|++||+.+++ .+..+.+|...|.++.|.+    ++++.+|++++.||.|++||+.+.. ....+..+..       
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~-------  161 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG-------  161 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT-------
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC-------
Confidence            9999999999998 8899999999999997643    5677899999999999999999876 4444433322       


Q ss_pred             ccCCceeeeccccCceeEEE----EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC---CCCEEE
Q 001311          550 SADGTRTYQGFRKRSLGVVQ----FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK---DGCLLA  622 (1102)
Q Consensus       550 s~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~  622 (1102)
                                +....+.++.    ++++++++++++.||.|++||+.+++...... +  ...|.+++|+|   ++.+|+
T Consensus       162 ----------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~~~l~  228 (357)
T 3i2n_A          162 ----------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I--KNGVCSLEFDRKDISMNKLV  228 (357)
T ss_dssp             ----------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCEEEEEESCSSSSCCEEE
T ss_pred             ----------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-C--CCceEEEEcCCCCCCCCEEE
Confidence                      1112344444    66778899999999999999999988765543 3  33699999999   999999


Q ss_pred             EEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCC
Q 001311          623 VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADV  702 (1102)
Q Consensus       623 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  702 (1102)
                      +++.||.|++||+.++ .....+..                                                       
T Consensus       229 ~~~~dg~i~i~d~~~~-~~~~~~~~-------------------------------------------------------  252 (357)
T 3i2n_A          229 ATSLEGKFHVFDMRTQ-HPTKGFAS-------------------------------------------------------  252 (357)
T ss_dssp             EEESTTEEEEEEEEEE-ETTTEEEE-------------------------------------------------------
T ss_pred             EECCCCeEEEEeCcCC-Ccccceee-------------------------------------------------------
Confidence            9999999999998765 22111100                                                       


Q ss_pred             CccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccc
Q 001311          703 KPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATA  781 (1102)
Q Consensus       703 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~  781 (1102)
                                    ...                .+|...|.+++|+|++. ++++++.||.|++|++...          
T Consensus       253 --------------~~~----------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------  292 (357)
T 3i2n_A          253 --------------VSE----------------KAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP----------  292 (357)
T ss_dssp             --------------EEE----------------ECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC----------
T ss_pred             --------------ecc----------------CCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC----------
Confidence                          000                12667788888888887 6788888888888876321          


Q ss_pred             cccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc
Q 001311          782 SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN  861 (1102)
Q Consensus       782 ~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~  861 (1102)
                                  ...               ..+.+++.....  .+        +.+.+..+.+|...|++++|+| +++
T Consensus       293 ------------~~~---------------~~~~~~g~~~~~--~~--------~~~~~~~~~~~~~~v~~~~~s~-~~~  334 (357)
T 3i2n_A          293 ------------IQR---------------SKKDSEGIEMGV--AG--------SVSLLQNVTLSTQPISSLDWSP-DKR  334 (357)
T ss_dssp             ------------SCC-----------------CCTTSCCCCC--CC--------EEEEEEEEECCSSCEEEEEECS-SST
T ss_pred             ------------ccc---------------ccccCCCCcccc--cc--------ccceeeccccCCCCeeEEEEcC-CCC
Confidence                        000               001111111100  11        1245667888999999999999 788


Q ss_pred             EEE-EEeCCCcEEEEEeeccee
Q 001311          862 IIA-IGMDDSSIQIYNVRVDEV  882 (1102)
Q Consensus       862 ~la-sg~~dg~v~vwd~~~~~~  882 (1102)
                      +|+ +|+.||.|+|||+.+.+.
T Consensus       335 ~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          335 GLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             TEEEEEETTSEEEEEEECC---
T ss_pred             eEEEEecCCCcEEEEECCCccc
Confidence            887 899999999999987553

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.2e-32  Score=310.69  Aligned_cols=326  Identities=13%  Similarity=0.165  Sum_probs=241.6

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      +..|.++|.+++|+||+++||+|+.|+.|++||+.+++ ......+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence            45689999999999999999999999999999999886 223345789999999999999999  799999999999999


Q ss_pred             CCCCeeeEE--eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311          484 ATNGAKQYI--FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  561 (1102)
Q Consensus       484 ~~~~~~~~~--~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  561 (1102)
                      +.+++....  +.+|...|.+++|+  +++.+|++++.|+.|++||++........                 ..+...+
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~d~~~~~~~~~~-----------------~~~~~~~  141 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWVC-----------------KHIKKPI  141 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEEE-----------------EEECTTC
T ss_pred             CCCCeeeeeEEeecCCCceeEEEEC--CCCCEEEEEeCCCEEEEEEecCCCcceee-----------------eeeeccc
Confidence            999876544  46799999999985  55689999999999999999876532111                 0111112


Q ss_pred             cCceeEEEEcCCCCEEEEEeCCCeEEEEEC------------------CCcceEEEEcCCCCCCCcCeEEEcCCCCEEEE
Q 001311          562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDM------------------DSVQLLTSIDADGGLPASPRIRFNKDGCLLAV  623 (1102)
Q Consensus       562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  623 (1102)
                      ...+.+++|+|++++|++++.||.|++||+                  ..++.+..+..+  ...|.+++|+|++++|++
T Consensus       142 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~  219 (372)
T 1k8k_C          142 RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--CGWVHGVCFSANGSRVAW  219 (372)
T ss_dssp             CSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--SSCEEEEEECSSSSEEEE
T ss_pred             CCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--CCeEEEEEECCCCCEEEE
Confidence            235666667777778999999999999995                  366777777655  347999999999999999


Q ss_pred             EECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCC
Q 001311          624 STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  703 (1102)
Q Consensus       624 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1102)
                      ++.||.|++||+.++ +.+..+.                                                         
T Consensus       220 ~~~d~~i~i~d~~~~-~~~~~~~---------------------------------------------------------  241 (372)
T 1k8k_C          220 VSHDSTVCLADADKK-MAVATLA---------------------------------------------------------  241 (372)
T ss_dssp             EETTTEEEEEEGGGT-TEEEEEE---------------------------------------------------------
T ss_pred             EeCCCEEEEEECCCC-ceeEEEc---------------------------------------------------------
Confidence            999999999999876 3332221                                                         


Q ss_pred             ccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccc
Q 001311          704 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  783 (1102)
Q Consensus       704 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  783 (1102)
                                                       .|...|.+++|+|++.+++++ .|+.+++|++..             
T Consensus       242 ---------------------------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~-------------  274 (372)
T 1k8k_C          242 ---------------------------------SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS-------------  274 (372)
T ss_dssp             ---------------------------------CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET-------------
T ss_pred             ---------------------------------cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC-------------
Confidence                                             155678899999999866666 899999998732             


Q ss_pred             cceeccCCCccc-cccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEE---EcCCCcee------eee-cCCCCCeeE
Q 001311          784 APQLWQPPSGIM-MTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLF---NMMTFKTM------ATF-MPPPPAATF  852 (1102)
Q Consensus       784 ~~~~w~~~~~~~-~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iw---d~~~~~~~------~~~-~~~~~~i~~  852 (1102)
                             ..+.. ....+..  +.             .-..+....+++|   +... ...      ..+ .+|...|++
T Consensus       275 -------~~~~~~~~~~~~~--~~-------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~  331 (372)
T 1k8k_C          275 -------AAGKLSFGGRLDV--PK-------------QSSQRGLTARERFQNLDKKA-SSEGSAAAGAGLDSLHKNSVSQ  331 (372)
T ss_dssp             -------TTTEEEECCCCCC--C---------------------CHHHHHHHCCCCC----------CCCSSSSSSCEEE
T ss_pred             -------cCceEEEeeccCc--cc-------------cchhhhcchhhhhhhccccc-ccccCccccccccccccCCcce
Confidence                   00211 0100000  00             0011113445556   4322 222      333 489999999


Q ss_pred             EEEecCCC---cEEEEEeCCCcEEEEEeecce
Q 001311          853 LAFHPQDN---NIIAIGMDDSSIQIYNVRVDE  881 (1102)
Q Consensus       853 l~~sp~d~---~~lasg~~dg~v~vwd~~~~~  881 (1102)
                      ++|.+.++   .+|++|+.||.|++||+.+++
T Consensus       332 ~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          332 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             EEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             eEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            99775477   999999999999999998754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=2.4e-32  Score=310.40  Aligned_cols=244  Identities=12%  Similarity=0.092  Sum_probs=206.2

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe--eEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      |.+.|++++|+|+|++ |++|+.|+.|+|||+.+++  .+.                   .+.+|...|.+++|+|++++
T Consensus         7 ~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~   66 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR   66 (372)
T ss_dssp             CSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred             cCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence            8899999999999995 9999999999999999886  443                   36789999999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee---e-EEeecCCC
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---Q-YIFEGHEA  498 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~---~-~~~~~h~~  498 (1102)
                      |++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++  +|++++.|+.|++||+..+..   . ....+|..
T Consensus        67 l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~  143 (372)
T 1k8k_C           67 IVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS  143 (372)
T ss_dssp             EEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred             EEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence            9999999999999999886443 334578999999999999999  799999999999999998763   3 33467899


Q ss_pred             CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC------------------CCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311          499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL------------------GSRVDYEAPGRWCTTMAYSADGTRTYQGF  560 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~------------------~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  560 (1102)
                      .|.+++|+  +++.+|++++.||.|++||+...                  .....+..+                    
T Consensus       144 ~i~~~~~~--~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------  201 (372)
T 1k8k_C          144 TVLSLDWH--PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSS--------------------  201 (372)
T ss_dssp             CEEEEEEC--TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCC--------------------
T ss_pred             CeeEEEEc--CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCC--------------------
Confidence            99999985  45689999999999999997532                  222222222                    


Q ss_pred             ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                       ...+.+++|+|++++|++++.|+.|++||+.+++.+..+..+..  .+.+++|+|++.+|+++ .|+.|++|++.+
T Consensus       202 -~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          202 -CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             -SSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred             -CCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence             23566677777777899999999999999999999999886643  79999999999988888 899999999987

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.1e-32  Score=312.29  Aligned_cols=265  Identities=17%  Similarity=0.260  Sum_probs=210.5

Q ss_pred             ccCCCCeeEEEEecC---CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          343 LNQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       343 ~~h~~~v~~v~~spd---g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      .+|.+.|++++|+|+   +..++++++.++.|+|||+.+++.+....              ......|...|.+++|+|+
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~~~~   80 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAWTYD   80 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEEEEC
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEeccC
Confidence            369999999999995   55457777777899999999887665311              1123347889999999999


Q ss_pred             ----CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEe-
Q 001311          420 ----GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-  493 (1102)
Q Consensus       420 ----g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-  493 (1102)
                          |++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+| ++.  +|++++.|+.|++||+.+++.+..+ 
T Consensus        81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~  155 (366)
T 3k26_A           81 SNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFG  155 (366)
T ss_dssp             TTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             CCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEec
Confidence                6799999999999999999987655   4778999999999999 777  8999999999999999999999988 


Q ss_pred             --ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCc-------------eeee
Q 001311          494 --EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------RTYQ  558 (1102)
Q Consensus       494 --~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~~~~  558 (1102)
                        .+|...|.+++|+  +++.+|++++.||.|++||+++......+..      .+.+++++.             ....
T Consensus       156 ~~~~~~~~v~~~~~~--~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 3k26_A          156 GVEGHRDEVLSADYD--LLGEKIMSCGMDHSLKLWRINSKRMMNAIKE------SYDYNPNKTNRPFISQKIHFPDFSTR  227 (366)
T ss_dssp             STTSCSSCEEEEEEC--TTSSEEEEEETTSCEEEEESCSHHHHHHHHH------HHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred             ccccccCceeEEEEC--CCCCEEEEecCCCCEEEEECCCCccccccce------eEEecCCCCcccccceeeccCccccc
Confidence              7899999999985  4668999999999999999987554432221      011111111             0111


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce--------------EEEEcCCCCCCCcCeEEEcCC--CCEEE
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--------------LTSIDADGGLPASPRIRFNKD--GCLLA  622 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~~~~s~~--~~~l~  622 (1102)
                      ..+...+.+++|+  ++++++++.|+.|++||+.++..              +..+..+.  ..|.+++|+|+  +++|+
T Consensus       228 ~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~~~l~  303 (366)
T 3k26_A          228 DIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ--CDIWYMRFSMDFWQKMLA  303 (366)
T ss_dssp             SSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS--CCSSCCCCEECTTSSEEE
T ss_pred             cCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC--CcEEEEEEcCCCCCcEEE
Confidence            1134567778887  67899999999999999987754              56666554  47999999999  99999


Q ss_pred             EEECCCcEEEEEccCC
Q 001311          623 VSTNDNGIKILATSDG  638 (1102)
Q Consensus       623 ~~~~dg~i~iwd~~~~  638 (1102)
                      +++.||.|++||+.++
T Consensus       304 ~~~~dg~i~vwd~~~~  319 (366)
T 3k26_A          304 LGNQVGKLYVWDLEVE  319 (366)
T ss_dssp             EECTTSCEEEEECCSS
T ss_pred             EEecCCcEEEEECCCC
Confidence            9999999999999876

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.6e-32  Score=297.15  Aligned_cols=244  Identities=17%  Similarity=0.226  Sum_probs=204.8

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      ..+.+|.+.|++++| |++++ |++|+.||.|+|||+.+++...                   .+..|...|.+++|+|+
T Consensus        12 ~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~~~~   70 (313)
T 3odt_A           12 ATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCYDSE   70 (313)
T ss_dssp             EEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEEETT
T ss_pred             HHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEECCC
Confidence            344569999999999 99996 9999999999999998887665                   36788999999999999


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      +++|++++.|+.|++|++...........+.+|...|.+++|  +++  ++++++.|+.|++||  .++.+..+..|...
T Consensus        71 ~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~  144 (313)
T 3odt_A           71 KELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNAS  144 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCSSC
T ss_pred             CCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCCCc
Confidence            999999999999999999876544444568899999999999  566  799999999999999  78888999999999


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC-CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA-PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      |.+++|.+ .++.++++++.||.|++||..  .....+.. +...+.                     +++++|++. ++
T Consensus       145 v~~~~~~~-~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~---------------------~~~~~~~~~-~~  199 (313)
T 3odt_A          145 VWDAKVVS-FSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVR---------------------HLAVVDDGH-FI  199 (313)
T ss_dssp             EEEEEEEE-TTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEE---------------------EEEEEETTE-EE
T ss_pred             eeEEEEcc-CCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEE---------------------EEEEcCCCe-EE
Confidence            99999875 245799999999999999933  33333333 444444                     445555545 89


Q ss_pred             EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +++.||.|++||+.+++.+..+..+..  .|.+++|+|++ .|++++.||.|++||+.++
T Consensus       200 ~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~  256 (313)
T 3odt_A          200 SCSNDGLIKLVDMHTGDVLRTYEGHES--FVYCIKLLPNG-DIVSCGEDRTVRIWSKENG  256 (313)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTS-CEEEEETTSEEEEECTTTC
T ss_pred             EccCCCeEEEEECCchhhhhhhhcCCc--eEEEEEEecCC-CEEEEecCCEEEEEECCCC
Confidence            999999999999999999999886644  79999999999 5889999999999998877

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.3e-33  Score=321.35  Aligned_cols=257  Identities=14%  Similarity=0.121  Sum_probs=196.7

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe--eEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      |.+.|++++|+|+|++ |++|+.|+.|+|||+.++.  .+.                   .+.+|.+.|.+++|+|++++
T Consensus        10 ~~~~v~~~~~s~~g~~-l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~   69 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTE-FVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR   69 (377)
T ss_dssp             CSSCCSCCEECSSSSE-EECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred             CCCcEEEEEECCCCCE-EEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence            6679999999999995 9999999999999998873  332                   47899999999999999999


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe---eeEEeec-CCC
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA---KQYIFEG-HEA  498 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~---~~~~~~~-h~~  498 (1102)
                      |++++.|++|+|||+.+++.......+.+|...|.+++|+|+++  +|++++.|+.|++||+++++   ....+.+ |..
T Consensus        70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~  147 (377)
T 3dwl_C           70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS  147 (377)
T ss_dssp             EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred             EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence            99999999999999998873334445788999999999999999  79999999999999999987   4778888 999


Q ss_pred             CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCC--CC--eeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311          499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP--GR--WCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  574 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~--~~--~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  574 (1102)
                      .|.+++|+  +++.+|++++.|+.|++||+............  ..  ....+.      ..+  .+...+.+++|+|++
T Consensus       148 ~v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~v~~~~~sp~~  217 (377)
T 3dwl_C          148 TILSLDWH--PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVC------AEY--PSGGWVHAVGFSPSG  217 (377)
T ss_dssp             CEEEEEEC--TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEE------ECC--CCSSSEEEEEECTTS
T ss_pred             CeEEEEEc--CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhh------hcc--cCCceEEEEEECCCC
Confidence            99999985  46689999999999999999753321110000  00  000000      111  234468888888888


Q ss_pred             CEEEEEeCCCeEEEEECCCcce----EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                      ++|++++.||.|++||+.+++.    +..+..+.  ..|.+++|+|++++|++++.++.+ +|+..
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            8999999999999999999987    66666554  479999999999999998766665 66554

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.4e-32  Score=313.38  Aligned_cols=256  Identities=12%  Similarity=0.098  Sum_probs=209.8

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe------eEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE------RLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  415 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  415 (1102)
                      +.+|.+.|++++|+|  + +|++|+.||.|+|||+.+++      .+.                   .+.+|...|.+++
T Consensus        12 ~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~   69 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSY-------------------SHFVHKSGLHHVD   69 (397)
T ss_dssp             SSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEE-------------------EEECCTTCEEEEE
T ss_pred             hhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcce-------------------EEecCCCcEEEEE
Confidence            346999999999999  4 59999999999999999876      332                   3678999999999


Q ss_pred             EccC----C---CeEEEEECCCeEEEEEccCCcee--eeEEEeecc-----ccCEEEEEEc----CCCCeeE-EEEecCC
Q 001311          416 WSPD----G---SLFGVAYSRHIVQIYSYHGGDEV--RQHLEIDAH-----VGGVNDIAFS----HPNKQLC-VITCGDD  476 (1102)
Q Consensus       416 ~spd----g---~~las~~~d~~v~vwd~~~~~~~--~~~~~l~~h-----~~~V~~v~~s----~d~~~~~-l~s~~~d  476 (1102)
                      |+|+    |   ++|++++.|+.|++||+.+++..  .....+.+|     ...|.+++|+    |+++  + |++++.|
T Consensus        70 ~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~d  147 (397)
T 1sq9_A           70 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVK  147 (397)
T ss_dssp             EEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETT
T ss_pred             EecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCC
Confidence            9999    9   99999999999999999988750  002246778     6999999999    9999  7 9999999


Q ss_pred             CcEEEEeCCC------CeeeE-----Eee-------cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec
Q 001311          477 KTIKVWDATN------GAKQY-----IFE-------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE  538 (1102)
Q Consensus       477 ~~i~vWd~~~------~~~~~-----~~~-------~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~  538 (1102)
                      +.|++||+.+      ++.+.     .+.       .|...|.+++|+  +++ ++++++.||.|++||+++......+.
T Consensus       148 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~  224 (397)
T 1sq9_A          148 GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS--ERG-LIATGFNNGTVQISELSTLRPLYNFE  224 (397)
T ss_dssp             SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC--TTS-EEEEECTTSEEEEEETTTTEEEEEEE
T ss_pred             CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC--CCc-eEEEEeCCCcEEEEECCCCceeEEEe
Confidence            9999999998      77776     774       489999999985  566 99999999999999999876665555


Q ss_pred             C---C---CCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC---CeEEEEECCCcceEEEEcCCC-----
Q 001311          539 A---P---GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSIKFWDMDSVQLLTSIDADG-----  604 (1102)
Q Consensus       539 ~---~---~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----  604 (1102)
                      .   |   ..                     .+.+++|+|++++|++++.|   +.|++||+.+++.+..+....     
T Consensus       225 ~~~~h~~~~~---------------------~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~  283 (397)
T 1sq9_A          225 SQHSMINNSN---------------------SIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA  283 (397)
T ss_dssp             CCC---CCCC---------------------CEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC------
T ss_pred             ccccccccCC---------------------ccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccc
Confidence            4   4   44                     45555555566789999999   999999999999999887610     


Q ss_pred             ------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311          605 ------GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       605 ------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                            +...|.+++|+|++++|++++.||.|++||+.++ +.+..+.
T Consensus       284 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~  330 (397)
T 1sq9_A          284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN  330 (397)
T ss_dssp             --CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred             cccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEe
Confidence                  2447999999999999999999999999999887 5555544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-31  Score=294.87  Aligned_cols=287  Identities=18%  Similarity=0.239  Sum_probs=232.7

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      .+.+|.+.|.+++| |++++|++|+.||.|++||+.+++...   .+..|...|.+++|+|+++  ++++++.|+.|++|
T Consensus        13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~   86 (313)
T 3odt_A           13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV   86 (313)
T ss_dssp             EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred             HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence            58899999999999 999999999999999999998876554   4678999999999999999  89999999999999


Q ss_pred             eCCCC---eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          483 DATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       483 d~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      ++...   +.+..+.+|...|.+++|    ++.++++++.||.|++||  .......+..+...+.++.+.+.       
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~-------  153 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF-------  153 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET-------
T ss_pred             EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC-------
Confidence            98764   667888999999999998    236899999999999999  44445555555555555555441       


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  639 (1102)
                                   +++++++++.|+.|++||  .++....+... +...+.+++|+|++. +++++.||.|++||+.++ 
T Consensus       154 -------------~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~-  215 (313)
T 3odt_A          154 -------------SENKFLTASADKTIKLWQ--NDKVIKTFSGI-HNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG-  215 (313)
T ss_dssp             -------------TTTEEEEEETTSCEEEEE--TTEEEEEECSS-CSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC-
T ss_pred             -------------CCCEEEEEECCCCEEEEe--cCceEEEEecc-CcccEEEEEEcCCCe-EEEccCCCeEEEEECCch-
Confidence                         446899999999999999  45566666541 244789999999998 899999999999998655 


Q ss_pred             cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311          640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  719 (1102)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~  719 (1102)
                      +.+..+.                                                                         
T Consensus       216 ~~~~~~~-------------------------------------------------------------------------  222 (313)
T 3odt_A          216 DVLRTYE-------------------------------------------------------------------------  222 (313)
T ss_dssp             CEEEEEE-------------------------------------------------------------------------
T ss_pred             hhhhhhh-------------------------------------------------------------------------
Confidence            1111110                                                                         


Q ss_pred             ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311          720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  799 (1102)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  799 (1102)
                                                                                                      
T Consensus       223 --------------------------------------------------------------------------------  222 (313)
T 3odt_A          223 --------------------------------------------------------------------------------  222 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311          800 VTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       800 ~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                          +|...|.+++|+|++. +++++ ||.|++||+.+++.+..+..|...|.+++|+| +++ +++++.||.|++||+.
T Consensus       223 ----~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          223 ----GHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             ----CCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEESC
T ss_pred             ----cCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEeCC
Confidence                1566788888888884 66666 89999999999999999999999999999999 777 5569999999999999


Q ss_pred             cceeeeee
Q 001311          879 VDEVKSKL  886 (1102)
Q Consensus       879 ~~~~~~~l  886 (1102)
                      +++.....
T Consensus       296 ~~~~~~~~  303 (313)
T 3odt_A          296 KSRWASED  303 (313)
T ss_dssp             GGGCCC--
T ss_pred             CCceeehh
Confidence            87765543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=318.17  Aligned_cols=327  Identities=12%  Similarity=0.106  Sum_probs=243.2

Q ss_pred             ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311          451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  530 (1102)
Q Consensus       451 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~  530 (1102)
                      .-...|.+++|+|||+  +++|++.|++|+  |...++++   .+|...|.+++|+|  +|       .++.+.+|+.+ 
T Consensus        13 ~~~~~v~sv~~SpDG~--~iASas~D~TV~--d~~~~~~l---~gh~~~v~~V~FsP--dg-------~~~~~~~~~~~-   75 (588)
T 2j04_A           13 EFEDWKNNLTWARDGT--LYLTTFPDISIG--QPKYAKDI---NCNSKNLFHVKEFP--LE-------FENKLDFELAQ-   75 (588)
T ss_dssp             CCSSSSCCEEECTTSC--EEEECSSSEEEE--EECCCSCC---SSBGGGTEEEEEEC--CC-------CCCTTTTSCCC-
T ss_pred             HhhccEEEEEECCCCC--EEEEEcCCceee--ccccccee---cCCCccEEEEEECC--CC-------CcceEEEEeCC-
Confidence            3457899999999999  899999999999  76666554   79999999999865  33       45555555433 


Q ss_pred             CCCeeeec-CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC---C
Q 001311          531 LGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG---L  606 (1102)
Q Consensus       531 ~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---~  606 (1102)
                        ....+. .+..                     .+.+++|+|+|.+|++++.||.|++||...  ++..+. +..   .
T Consensus        76 --~~~~~~~~~~~---------------------~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~  129 (588)
T 2j04_A           76 --QNGLLNSQPVC---------------------YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS  129 (588)
T ss_dssp             --SSCSSTTSCSC---------------------CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred             --CceEeecCCCC---------------------cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence              222221 2233                     455555555556899999999999999644  555555 332   2


Q ss_pred             CCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccc
Q 001311          607 PASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM  686 (1102)
Q Consensus       607 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  686 (1102)
                      ..+.+++|||||++|++|+.||+|++||+.++. ....                 .|                       
T Consensus       130 ~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~-l~~~-----------------~~-----------------------  168 (588)
T 2j04_A          130 RTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS-ENTP-----------------EF-----------------------  168 (588)
T ss_dssp             TCEEEEEECSSSSCEEEEETTSEEEEEECCCCT-TTCC-----------------CC-----------------------
T ss_pred             ccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc-cccc-----------------cc-----------------------
Confidence            258999999999999999999999999987651 1000                 00                       


Q ss_pred             cccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEee
Q 001311          687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLW  766 (1102)
Q Consensus       687 ~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw  766 (1102)
                                                 +.                                      +         ..+
T Consensus       169 ---------------------------i~--------------------------------------l---------~ti  174 (588)
T 2j04_A          169 ---------------------------YF--------------------------------------E---------SSI  174 (588)
T ss_dssp             ---------------------------EE--------------------------------------E---------EEE
T ss_pred             ---------------------------ee--------------------------------------e---------eee
Confidence                                       00                                      0         000


Q ss_pred             eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCce---eeee
Q 001311          767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATF  843 (1102)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~---~~~~  843 (1102)
                      .                                ....+|...|.+++|+||| +++++.|++|++||+.++..   .+++
T Consensus       175 ~--------------------------------~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL  221 (588)
T 2j04_A          175 R--------------------------------LSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMI  221 (588)
T ss_dssp             E--------------------------------CSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred             e--------------------------------cccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeee
Confidence            0                                0001277889999999999 44444499999999988774   3456


Q ss_pred             -cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEE--ecCCCEEEEEcCCCcEEEEEcC
Q 001311          844 -MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAF--SHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       844 -~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                       .+|...|.+++|+   +++||+++ ++.|++||+.+++......+|.+.|.+++|  +||+..|++++.||+ ++|..+
T Consensus       222 ~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d  296 (588)
T 2j04_A          222 QNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             ECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred             cccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence             4788899999999   37899887 699999999988774444489999999999  999999999999999 999876


Q ss_pred             CCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311          921 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
                      .                        ++|+||+..++.. |+++++|+...+. ...+   .+...|++++|||||+.+|+
T Consensus       297 ~------------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~---~~~~~I~~va~SPdG~~lA~  347 (588)
T 2j04_A          297 E------------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNNY---ETTLVIHGISLSPDGYSIAI  347 (588)
T ss_dssp             S------------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSSS---CCEEEEEEEEECTTSSEEEE
T ss_pred             c------------------------EEECCCceEEEEc-CCEEEEEECCCCc-eeee---ccceEEEEEEECCCCCEEEE
Confidence            2                        5589999887775 9999999986554 2222   23667999999999999998


Q ss_pred             Ee
Q 001311         1001 CF 1002 (1102)
Q Consensus      1001 ~s 1002 (1102)
                      ++
T Consensus       348 ~~  349 (588)
T 2j04_A          348 VY  349 (588)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.1e-32  Score=310.48  Aligned_cols=291  Identities=12%  Similarity=0.160  Sum_probs=210.0

Q ss_pred             ccCEEEEEEcCCCCeeEEEEecCCC-------cEEEEeCCCCee----------eEEeecCCCCeEEEeeeecCCccEEE
Q 001311          453 VGGVNDIAFSHPNKQLCVITCGDDK-------TIKVWDATNGAK----------QYIFEGHEAPVYSVCPHHKENIQFIF  515 (1102)
Q Consensus       453 ~~~V~~v~~s~d~~~~~l~s~~~d~-------~i~vWd~~~~~~----------~~~~~~h~~~v~~v~~~~~~~~~~l~  515 (1102)
                      .-||++++|+||++  +|++||.|.       .|++|++..+..          ...+.+|...|.++++.  .  ..++
T Consensus        14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~--~~~~   87 (365)
T 4h5i_A           14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--K--GIIL   87 (365)
T ss_dssp             SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--T--TEEE
T ss_pred             CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--C--CEEE
Confidence            35899999999999  799987544       599999876532          13467888889888753  3  4566


Q ss_pred             EEe-----------CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe--C
Q 001311          516 STA-----------LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG--D  582 (1102)
Q Consensus       516 s~s-----------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~  582 (1102)
                      +|+           .|+.+++|++..........      ....+.      .....+..+.+++|+|||+++++++  .
T Consensus        88 ~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~------~~~~~~------~~~~~~~~~~~v~fSpDg~~la~as~~~  155 (365)
T 4h5i_A           88 VGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFL------TSVDFD------ASTNADDYTKLVYISREGTVAAIASSKV  155 (365)
T ss_dssp             EECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEE------EEECSS------CCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred             EEECCCccEEEEecCCCcEEEEEecCCCceEEEe------eeecee------ecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence            654           46778888876654332211      111000      0011123456777888888876554  6


Q ss_pred             CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCC
Q 001311          583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  662 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (1102)
                      |++|++||+.+++++..+..+   ..|.+++|+|||++|++++.+ .+++|+..++........                
T Consensus       156 d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~----------------  215 (365)
T 4h5i_A          156 PAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTD----------------  215 (365)
T ss_dssp             SCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECC----------------
T ss_pred             CCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeec----------------
Confidence            899999999999999888633   359999999999999999854 566666555421111000                


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccce
Q 001311          663 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  742 (1102)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i  742 (1102)
                                                                                               ..     
T Consensus       216 -------------------------------------------------------------------------~~-----  217 (365)
T 4h5i_A          216 -------------------------------------------------------------------------FD-----  217 (365)
T ss_dssp             -------------------------------------------------------------------------CC-----
T ss_pred             -------------------------------------------------------------------------CC-----
Confidence                                                                                     01     


Q ss_pred             EEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311          743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  822 (1102)
Q Consensus       743 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la  822 (1102)
                                                                                    |...|.+++|+||+++++
T Consensus       218 --------------------------------------------------------------~~~~v~~v~fspdg~~l~  235 (365)
T 4h5i_A          218 --------------------------------------------------------------KNWSLSKINFIADDTVLI  235 (365)
T ss_dssp             --------------------------------------------------------------TTEEEEEEEEEETTEEEE
T ss_pred             --------------------------------------------------------------CCCCEEEEEEcCCCCEEE
Confidence                                                                          344455566666666666


Q ss_pred             EEe-CC----eEEEEEcCCCce----eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-cccccc
Q 001311          823 SAS-GG----KISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKR  892 (1102)
Q Consensus       823 s~s-dg----~I~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~  892 (1102)
                      +++ |+    .+++|++.....    ...+.+|...|++++|+| |+++||+|+.|++|+|||+.+++++..+ .+|...
T Consensus       236 ~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~  314 (365)
T 4h5i_A          236 AASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA  314 (365)
T ss_dssp             EEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC
T ss_pred             EEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC
Confidence            555 43    466677655432    345778999999999999 9999999999999999999999998874 799999


Q ss_pred             ceeEEEecCCCEEEEEcCCCcEEEEEcCCC
Q 001311          893 ITGLAFSHALNVLVSSGADSQLCVWSSDGW  922 (1102)
Q Consensus       893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  922 (1102)
                      |++|+|+|||++|||++.|++|+||++...
T Consensus       315 V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          315 ITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999999999999999999999753

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-33  Score=318.73  Aligned_cols=318  Identities=8%  Similarity=-0.020  Sum_probs=232.5

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      -...|.+|+|||||++ +||++.|++|+  |...++                      .+.+|...|.+++|+|+|    
T Consensus        14 ~~~~v~sv~~SpDG~~-iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg----   64 (588)
T 2j04_A           14 FEDWKNNLTWARDGTL-YLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE----   64 (588)
T ss_dssp             CSSSSCCEEECTTSCE-EEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC----
T ss_pred             hhccEEEEEECCCCCE-EEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC----
Confidence            4589999999999995 99999999999  754442                      247899999999999999    


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC-----C
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----P  499 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~-----~  499 (1102)
                         .++.+.+|+.+....+    .+ .|...|.+++|||||+  .|++++.||.|++||...  ++..+. |..     .
T Consensus        65 ---~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~s  131 (588)
T 2j04_A           65 ---FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRT  131 (588)
T ss_dssp             ---CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTC
T ss_pred             ---CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccccc
Confidence               5666666654433211    12 5688999999999999  799999999999999544  777777 766     4


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC-------eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS-------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  572 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  572 (1102)
                      |.+++|+  ++|++|++|+.||+|++||+.++..       ...+..+                ..+ +...+.+++|+|
T Consensus       132 v~svafS--PDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~----------------~~g-h~~~V~sVawSP  192 (588)
T 2j04_A          132 YHCFEWN--PIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLS----------------DAG-SKDWVTHIVWYE  192 (588)
T ss_dssp             EEEEEEC--SSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECS----------------CTT-CCCCEEEEEEET
T ss_pred             EEEEEEc--CCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecc----------------ccc-ccccEEEEEEcC
Confidence            9999984  6778999999999999999987542       1222111                011 123566666777


Q ss_pred             CCCEEEEEeCCCeEEEEECCCcce---EEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccc
Q 001311          573 TKNRFLAAGDDFSIKFWDMDSVQL---LTSID-ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  648 (1102)
Q Consensus       573 ~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  648 (1102)
                      +|  +++++.|++|++||+.++..   ..++. +|  ...|.+++|+  |+.|++++ +++|++||+.++......    
T Consensus       193 dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~----  261 (588)
T 2j04_A          193 DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--RRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK----  261 (588)
T ss_dssp             TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--SSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE----
T ss_pred             Cc--EEEEeCCCeEEEEECCCCccccceeeecccc--cCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE----
Confidence            76  78899999999999988774   34553 33  3479999999  68888887 699999998876221111    


Q ss_pred             cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcc
Q 001311          649 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  728 (1102)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~  728 (1102)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (588)
T 2j04_A          262 --------------------------------------------------------------------------------  261 (588)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccCCCcccccceEEEEE--ccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCC
Q 001311          729 RSLRLPENLRATKISRLIF--TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE  806 (1102)
Q Consensus       729 ~~~~~~~~~~~~~i~~~~~--s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  806 (1102)
                             .+|...+..++|  +|++..++++..+|+ ++|..+                                     
T Consensus       262 -------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d-------------------------------------  296 (588)
T 2j04_A          262 -------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED-------------------------------------  296 (588)
T ss_dssp             -------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-------------------------------------
T ss_pred             -------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-------------------------------------
Confidence                   126667788888  888888888888888 888751                                     


Q ss_pred             CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe
Q 001311          807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM  867 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~  867 (1102)
                          .++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+.+|+++
T Consensus       297 ----~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~  349 (588)
T 2j04_A          297 ----ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVY  349 (588)
T ss_dssp             ----SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEE
T ss_pred             ----cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEE
Confidence                24477777666654 6777777764433 334443 44577777777 777777664

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2e-31  Score=305.63  Aligned_cols=289  Identities=16%  Similarity=0.219  Sum_probs=236.7

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      .-+|.+.+.+.++++++.. +++++.|+.|+|||+.+++....                  ....|...|.+++|+|+++
T Consensus        87 ~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s~~~~  147 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWSHDGS  147 (401)
T ss_dssp             CTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEECTTSS
T ss_pred             CCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEECCCCC
Confidence            3356555444444444454 67788999999999999887653                  2334899999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCeeeEEeecCCCCe
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGAKQYIFEGHEAPV  500 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~~~~~~~~~~h~~~v  500 (1102)
                      +|++|+.||.|++||+.+++.+.   .+.+|...|.+++|  ++.  ++++++.|+.|++||++ .+..+..+.+|.+.|
T Consensus       148 ~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~--~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v  220 (401)
T 4aez_A          148 FLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSW--NRH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEV  220 (401)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCE
T ss_pred             EEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEE--CCC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCe
Confidence            99999999999999999987665   47799999999999  445  79999999999999999 567788999999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .+++|++  ++.+|++++.||.|++||+.+......+..+...|.+++|+|++.                    ..++++
T Consensus       221 ~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~--------------------~ll~~~  278 (401)
T 4aez_A          221 CGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQS--------------------NLLATG  278 (401)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTST--------------------TEEEEE
T ss_pred             eEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCC--------------------CEEEEe
Confidence            9999854  668999999999999999998887777777777777777777665                    456666


Q ss_pred             e--CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE--CCCcEEEEEccCCccceeecccccccccccC
Q 001311          581 G--DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDGIRLLRTFENLAYDASRTS  656 (1102)
Q Consensus       581 ~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  656 (1102)
                      +  .|+.|++||+.+++.+..+...   ..+.+++|+|+++++++++  .||.|++|++.++ ......           
T Consensus       279 ~gs~d~~i~i~d~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~-~~~~~~-----------  343 (401)
T 4aez_A          279 GGTMDKQIHFWNAATGARVNTVDAG---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS-GLTKQV-----------  343 (401)
T ss_dssp             CCTTTCEEEEEETTTCCEEEEEECS---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-EEEEEE-----------
T ss_pred             cCCCCCEEEEEECCCCCEEEEEeCC---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-cceeEE-----------
Confidence            5  7999999999999999888643   3599999999999999954  8999999998765 211111           


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311          657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  736 (1102)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  736 (1102)
                                                                                   .+                .
T Consensus       344 -------------------------------------------------------------~~----------------~  346 (401)
T 4aez_A          344 -------------------------------------------------------------DI----------------P  346 (401)
T ss_dssp             -------------------------------------------------------------EE----------------E
T ss_pred             -------------------------------------------------------------Ee----------------c
Confidence                                                                         00                1


Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeeccc
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQR  770 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~  770 (1102)
                      +|...|.+++|+|++++|++++.||.|++|++..
T Consensus       347 ~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          347 AHDTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            2667899999999999999999999999999743

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=3.7e-32  Score=306.11  Aligned_cols=203  Identities=15%  Similarity=0.122  Sum_probs=169.1

Q ss_pred             CCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001311          805 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  881 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  881 (1102)
                      +...+.+++|||||+++++++   |++|+|||+.+++++..+. |...|.+++|+| |+++|++++. +.+++|+..+++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~-~~~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITG-SSLEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECS-SCEEEEETTTCC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccc-eeEEEEEeccCc
Confidence            556688999999999987654   7999999999999998886 778899999999 9999999985 457777777766


Q ss_pred             eee--eeccccccceeEEEecCCCEEEEEcCCC----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311          882 VKS--KLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  955 (1102)
Q Consensus       882 ~~~--~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  955 (1102)
                      .+.  ...+|...|.+++|+||++++++++.|+    .+++|++......... .....+|.   ..|.+++|+|||++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~---~~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLR-SKQVTNRF---KGITSMDVDMKGELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEE-EEEEESSC---SCEEEEEECTTSCEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceeccee-eeeecCCC---CCeEeEEECCCCCce
Confidence            543  4567999999999999999999999887    5888988765432222 22233443   379999999999999


Q ss_pred             EEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311          956 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       956 ~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      |++ .|+.|+|||+.+++++..+. .+|...|++++|||||++||+||.|++|+|||++..
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~-~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFK-QAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEET-TSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEec-CcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            995 89999999999999988753 389999999999999999999999999999999654

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.9e-31  Score=304.34  Aligned_cols=239  Identities=17%  Similarity=0.234  Sum_probs=198.0

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  427 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  427 (1102)
                      -++.|+||+++  +||+|. |++|+|||+.+++.....                 .+.+|...|++|+|+|||++||+|+
T Consensus       107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~-----------------~~~~~~~~V~sv~fspdg~~lasgs  166 (420)
T 4gga_A          107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLL-----------------QMEQPGEYISSVAWIKEGNYLAVGT  166 (420)
T ss_dssp             TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEE-----------------ECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEE-----------------EecCCCCcEEEEEECCCCCEEEEEE
Confidence            35789999875  588775 899999999999876531                 2567889999999999999999999


Q ss_pred             CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCeEEEeee
Q 001311          428 SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPVYSVCPH  506 (1102)
Q Consensus       428 ~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v~~v~~~  506 (1102)
                      .||+|+|||+.+++.+.   .+.+|...|.+++|+  +.  ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus       167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence            99999999999998665   578999999998885  45  7999999999999998864 5567889999999999874


Q ss_pred             ecCCccEEEEEeCCCeEEEEEcCCCCC----eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE--E
Q 001311          507 HKENIQFIFSTALDGKIKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA--A  580 (1102)
Q Consensus       507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~  580 (1102)
                        +++.++++++.|+.|++|+...++.    ......+...|.+++|+|++.                    ..+++  |
T Consensus       240 --~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~--------------------~~la~~~g  297 (420)
T 4gga_A          240 --PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQS--------------------NVLATGGG  297 (420)
T ss_dssp             --TTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCT--------------------TEEEEEEC
T ss_pred             --CCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcc--------------------cEEEEEee
Confidence              5668999999999999999987653    234455666677777766654                    34554  3


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE--CCCcEEEEEccCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--NDNGIKILATSDG  638 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~  638 (1102)
                      +.|+.|++||+.++++...+..+.   .+.++.|+++++.+++++  .||.|++||+.++
T Consensus       298 s~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~  354 (420)
T 4gga_A          298 TSDRHIRIWNVCSGACLSAVDAHS---QVCSILWSPHYKELISGHGFAQNQLVIWKYPTM  354 (420)
T ss_dssp             TTTCEEEEEETTTTEEEEEEECSS---CEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred             cCCCEEEEEeCCccccceeecccc---ceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence            479999999999999999887654   488999999999998876  6899999998776

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1e-32  Score=314.03  Aligned_cols=341  Identities=10%  Similarity=0.060  Sum_probs=220.3

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      +..|.+.|++++|+|||++||+|+.|+.|+|||+.++. ......+.+|.+.|.+++|+|+++  +|++++.|++|++||
T Consensus         7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG-WKHARTFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE   83 (377)
T ss_dssp             EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE-EEECCCBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred             EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc-eEEEEEEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence            34467799999999999999999999999999999873 122335889999999999999998  799999999999999


Q ss_pred             CCCCe---eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC---eeeecC-CCCeeeEEEEccCCcee
Q 001311          484 ATNGA---KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEA-PGRWCTTMAYSADGTRT  556 (1102)
Q Consensus       484 ~~~~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~~~~~~  556 (1102)
                      +.+++   ....+.+|...|.+++|++  ++.+|++++.|+.|++||+++...   ...+.. |..              
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~--------------  147 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS--------------  147 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCS--------------
T ss_pred             cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCC--------------
Confidence            99987   6778889999999999854  668999999999999999987653   333333 444              


Q ss_pred             eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC------------------cceEEEEcCCCCCCCcCeEEEcCCC
Q 001311          557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS------------------VQLLTSIDADGGLPASPRIRFNKDG  618 (1102)
Q Consensus       557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~~~v~~~~~s~~~  618 (1102)
                             .+.+++|+|++++|++++.|+.|++||+..                  ++++..+   .+...|.+++|+|++
T Consensus       148 -------~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~sp~~  217 (377)
T 3dwl_C          148 -------TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY---PSGGWVHAVGFSPSG  217 (377)
T ss_dssp             -------CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC---CCSSSEEEEEECTTS
T ss_pred             -------CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc---cCCceEEEEEECCCC
Confidence                   455555666667899999999999999853                  3444444   345579999999999


Q ss_pred             CEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccc
Q 001311          619 CLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRS  698 (1102)
Q Consensus       619 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  698 (1102)
                      ++|++++.||.|++||+.++......+.                                                    
T Consensus       218 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~----------------------------------------------------  245 (377)
T 3dwl_C          218 NALAYAGHDSSVTIAYPSAPEQPPRALI----------------------------------------------------  245 (377)
T ss_dssp             SCEEEEETTTEEC-CEECSTTSCEEECC----------------------------------------------------
T ss_pred             CEEEEEeCCCcEEEEECCCCCCcceeeE----------------------------------------------------
Confidence            9999999999999999987732111000                                                    


Q ss_pred             cCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCc
Q 001311          699 LADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK  778 (1102)
Q Consensus       699 ~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~  778 (1102)
                                                     .+    .+|...|.+++|+|++++|++++.++.+ +|+...........
T Consensus       246 -------------------------------~~----~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~  289 (377)
T 3dwl_C          246 -------------------------------TV----KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRD  289 (377)
T ss_dssp             -------------------------------CE----ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBC
T ss_pred             -------------------------------ee----cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEee
Confidence                                           00    2266789999999999988888766666 66553221100000


Q ss_pred             ccccccceeccCCCccccc-cccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEe
Q 001311          779 ATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFH  856 (1102)
Q Consensus       779 ~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~s  856 (1102)
                               ++........ .............++.|++....+.... .+...       ........|.+.|+++++.
T Consensus       290 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~H~~~i~~~~~~  353 (377)
T 3dwl_C          290 ---------LDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQ-------SISSLPTVHQNMIATLRPY  353 (377)
T ss_dssp             ---------CCSCCCCCCBSSSSSBCCCCCC--------------------------------CCCSSSCSSCEEEEEEE
T ss_pred             ---------ecccccccccccccccccccccccccccccccccccchhhccccc-------cccccCccccceeEEEecc
Confidence                     0000000000 0000000112244444444433332221 12211       1222345699999999987


Q ss_pred             cCCCc---EEEEEeCCCcEEEEEe
Q 001311          857 PQDNN---IIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       857 p~d~~---~lasg~~dg~v~vwd~  877 (1102)
                      +.++.   .|++|+.||.|+|||+
T Consensus       354 ~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          354 AGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             EEETTEEEEEEEEETTSEEEEECC
T ss_pred             CCCCCceEEEEeecCCCcEEEecC
Confidence            63444   7999999999999985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.8e-31  Score=304.38  Aligned_cols=299  Identities=15%  Similarity=0.211  Sum_probs=225.9

Q ss_pred             CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe
Q 001311          409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  488 (1102)
Q Consensus       409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~  488 (1102)
                      -.++.|+||++ ++||+|. |++|+|||..+|+... ...+.+|...|++|+|+|||+  +|++|+.|++|+|||+.+++
T Consensus       106 ~y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          106 YYLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-LLQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQK  180 (420)
T ss_dssp             TTCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-EEECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTE
T ss_pred             ccceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-EEEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCc
Confidence            35788999986 4777775 9999999999998664 334668889999999999999  89999999999999999999


Q ss_pred             eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe-eeecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311          489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  567 (1102)
Q Consensus       489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  567 (1102)
                      ++..+.+|...+.++.++    +.+|++|+.|+.+++||....... ..+..|...                     +..
T Consensus       181 ~~~~~~~h~~~v~~~s~~----~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~---------------------~~~  235 (420)
T 4gga_A          181 RLRNMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE---------------------VCG  235 (420)
T ss_dssp             EEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC---------------------EEE
T ss_pred             EEEEEeCCCCceEEEeeC----CCEEEEEeCCCceeEeeecccceeeEEecccccc---------------------eee
Confidence            999999999999988763    368999999999999998865433 334444444                     444


Q ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCcce----EEEEcCCCCCCCcCeEEEcCCC-CEEEEE--ECCCcEEEEEccCCcc
Q 001311          568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQL----LTSIDADGGLPASPRIRFNKDG-CLLAVS--TNDNGIKILATSDGIR  640 (1102)
Q Consensus       568 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~  640 (1102)
                      +.++++++++++++.|+.|++|+..+++.    +.....+  ...|.+++|+|++ ..++++  +.|++|++||+.++ .
T Consensus       236 ~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~-~  312 (420)
T 4gga_A          236 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG-A  312 (420)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT-E
T ss_pred             eeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc-c
Confidence            55555566899999999999999987653    3444433  4478999999955 455554  46899999998766 2


Q ss_pred             ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311          641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  720 (1102)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~  720 (1102)
                      ....+.                                                                          
T Consensus       313 ~~~~~~--------------------------------------------------------------------------  318 (420)
T 4gga_A          313 CLSAVD--------------------------------------------------------------------------  318 (420)
T ss_dssp             EEEEEE--------------------------------------------------------------------------
T ss_pred             cceeec--------------------------------------------------------------------------
Confidence            111110                                                                          


Q ss_pred             cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311          721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  800 (1102)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  800 (1102)
                                                                                                      
T Consensus       319 --------------------------------------------------------------------------------  318 (420)
T 4gga_A          319 --------------------------------------------------------------------------------  318 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          801 TDSNPEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       801 ~~~~~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                          +...+.++.|+++++.+++++   |+.|+|||+.+++++.++.+|.+.|++++|+| |+++||+|+.||+|+|||+
T Consensus       319 ----~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWdv  393 (420)
T 4gga_A          319 ----AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWRC  393 (420)
T ss_dssp             ----CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEECC
T ss_pred             ----cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEEC
Confidence                223466777788887777653   78999999999999999999999999999999 9999999999999999999


Q ss_pred             ecceeeeeeccccccceeEEEe
Q 001311          878 RVDEVKSKLKGHSKRITGLAFS  899 (1102)
Q Consensus       878 ~~~~~~~~l~~h~~~V~~l~~s  899 (1102)
                      ......+....+...+....|.
T Consensus       394 ~~~~~~~~~~~~~~~~~~~s~~  415 (420)
T 4gga_A          394 FELDPARRREREKASAAKSSLI  415 (420)
T ss_dssp             SCSSCC----------------
T ss_pred             CCCCccchhhhccCCccccccC
Confidence            8766666666565554444443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.9e-31  Score=302.35  Aligned_cols=292  Identities=13%  Similarity=0.128  Sum_probs=223.7

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      ..+|...+.+.++++++..+++++.|+.|++||+.+++.....  ...|...|.+++|+|+++  +|++|+.||.|++||
T Consensus        87 ~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYD  162 (401)
T ss_dssp             CTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEEEE
T ss_pred             CCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEEEE
Confidence            3466655444444444567889999999999999998865432  224899999999999999  799999999999999


Q ss_pred             CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      +.+++.+..+.+|...|.+++|.    +.++++++.||.|++||++.. .....+..|...|.                 
T Consensus       163 ~~~~~~~~~~~~~~~~v~~~~~~----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-----------------  221 (401)
T 4aez_A          163 VESQTKLRTMAGHQARVGCLSWN----RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC-----------------  221 (401)
T ss_dssp             TTTCCEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-----------------
T ss_pred             CcCCeEEEEecCCCCceEEEEEC----CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee-----------------
Confidence            99999999999999999999982    369999999999999999853 33444455554444                 


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEE--CCCcEEEEEccCCc
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGC-LLAVST--NDNGIKILATSDGI  639 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~--~dg~i~iwd~~~~~  639 (1102)
                          +++|+|++++|++++.|+.|++||+.+++.+..+..+.  ..|.+++|+|++. ++++++  .|+.|++||+.++ 
T Consensus       222 ----~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~-  294 (401)
T 4aez_A          222 ----GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG-  294 (401)
T ss_dssp             ----EEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC-
T ss_pred             ----EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC-
Confidence                45555555689999999999999999999988887654  4799999999765 555554  6999999998765 


Q ss_pred             cceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEec
Q 001311          640 RLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKL  719 (1102)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~  719 (1102)
                      ..+..+.                                                                         
T Consensus       295 ~~~~~~~-------------------------------------------------------------------------  301 (401)
T 4aez_A          295 ARVNTVD-------------------------------------------------------------------------  301 (401)
T ss_dssp             CEEEEEE-------------------------------------------------------------------------
T ss_pred             CEEEEEe-------------------------------------------------------------------------
Confidence            1111110                                                                         


Q ss_pred             ccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccc
Q 001311          720 TELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTND  799 (1102)
Q Consensus       720 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  799 (1102)
                                                                                                      
T Consensus       302 --------------------------------------------------------------------------------  301 (401)
T 4aez_A          302 --------------------------------------------------------------------------------  301 (401)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCCeeEEEEecCCCeEEE--Ee-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEE
Q 001311          800 VTDSNPEEAVPCFALSKNDSYVMS--AS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI  874 (1102)
Q Consensus       800 ~~~~~~~~~i~~l~~s~d~~~las--~s-dg~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~v  874 (1102)
                           +...+.+++|+|+++++++  |+ ||.|++||+.++...  ..+.+|...|.+++|+| ++++|++++.||.|++
T Consensus       302 -----~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~i  375 (401)
T 4aez_A          302 -----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKF  375 (401)
T ss_dssp             -----CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEE
T ss_pred             -----CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEE
Confidence                 2334667777777777777  33 788888888775544  34678999999999999 9999999999999999


Q ss_pred             EEeecceeeeee
Q 001311          875 YNVRVDEVKSKL  886 (1102)
Q Consensus       875 wd~~~~~~~~~l  886 (1102)
                      ||+.+++.+...
T Consensus       376 w~~~~~~~~~~~  387 (401)
T 4aez_A          376 WRVYDGDHVKRP  387 (401)
T ss_dssp             EECCC-------
T ss_pred             EECCCCcccccc
Confidence            999998876654

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.9e-31  Score=290.16  Aligned_cols=283  Identities=18%  Similarity=0.262  Sum_probs=219.0

Q ss_pred             CeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee
Q 001311          410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK  489 (1102)
Q Consensus       410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~  489 (1102)
                      ..++|+||+++ +||+| .|++|+|||+.+++.++. ..+.+|...|++++|+|+++  +|++|+.|++|++||++++++
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~-~~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~  101 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  101 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEE-EEecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCcee
Confidence            46789999986 77766 499999999999987653 34668889999999999999  899999999999999999999


Q ss_pred             eEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          490 QYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       490 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                      +..+.+|...+.++.+  .+  .++++++.++.+++|+.....                                     
T Consensus       102 ~~~~~~h~~~~~~~~~--~~--~~l~s~~~~~~~~~~~~~~~~-------------------------------------  140 (318)
T 4ggc_A          102 LRNMTSHSARVGSLSW--NS--YILSSGSRSGHIHHHDVRVAE-------------------------------------  140 (318)
T ss_dssp             EEEEECCSSCEEEEEE--ET--TEEEEEETTSEEEEEETTSSS-------------------------------------
T ss_pred             EEEecCccceEEEeec--CC--CEEEEEecCCceEeeecCCCc-------------------------------------
Confidence            9999999998876653  22  577788877777777654321                                     


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccc
Q 001311          570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  649 (1102)
Q Consensus       570 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  649 (1102)
                                               ..+..+..+  ...+..+.+++++++|++++.||.|++||+.++.........  
T Consensus       141 -------------------------~~~~~~~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--  191 (318)
T 4ggc_A          141 -------------------------HHVATLSGH--SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT--  191 (318)
T ss_dssp             -------------------------CEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE--
T ss_pred             -------------------------eeEEEEcCc--cCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee--
Confidence                                     112223333  335778999999999999999999999998766211100000  


Q ss_pred             ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccc
Q 001311          650 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  729 (1102)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~  729 (1102)
                                                                                           .          
T Consensus       192 ---------------------------------------------------------------------~----------  192 (318)
T 4ggc_A          192 ---------------------------------------------------------------------F----------  192 (318)
T ss_dssp             ---------------------------------------------------------------------E----------
T ss_pred             ---------------------------------------------------------------------e----------
Confidence                                                                                 0          


Q ss_pred             cccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCe
Q 001311          730 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  809 (1102)
Q Consensus       730 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i  809 (1102)
                            .                                                                   .+...|
T Consensus       193 ------~-------------------------------------------------------------------~~~~~v  199 (318)
T 4ggc_A          193 ------T-------------------------------------------------------------------QHQGAV  199 (318)
T ss_dssp             ------C-------------------------------------------------------------------CCCSCE
T ss_pred             ------c-------------------------------------------------------------------ccCCce
Confidence                  0                                                                   033445


Q ss_pred             eEEEEecCCCeE---EEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--CCCcEEEEEeecceee
Q 001311          810 PCFALSKNDSYV---MSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       810 ~~l~~s~d~~~l---as~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~~~~~~  883 (1102)
                      .++++++++..+   ++++ ++.|++||........... +...+..+.|++ ++..+++++  .|+.|+|||+.+++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~-~~~~~~~~sg~~d~~i~iwd~~~~~~~  277 (318)
T 4ggc_A          200 KAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAKV  277 (318)
T ss_dssp             EEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCEE
T ss_pred             EEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc-cccceEEEEEcCCCEEEEEECCCCcEE
Confidence            555555554432   2344 6889999998877666554 667799999999 677666554  7999999999999999


Q ss_pred             eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC
Q 001311          884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                      ..+.+|.+.|++|+|+||+++|||++.|++|+|||+..
T Consensus       278 ~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          278 AELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            99999999999999999999999999999999999865

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=6.2e-31  Score=287.58  Aligned_cols=248  Identities=11%  Similarity=0.072  Sum_probs=203.3

Q ss_pred             CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC--CceeeeecCCCCCeeEEEEecC-CCcEEEEEeCCCcEEEEEeec
Q 001311          804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT--FKTMATFMPPPPAATFLAFHPQ-DNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~--~~~~~~~~~~~~~i~~l~~sp~-d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      +|...|.+++|+|+|++||+++ |++|+|||+.+  .+.+.++.+|...|.+++|+++ ++++||+|+.||+|+|||+.+
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~   86 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN   86 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS
T ss_pred             CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC
Confidence            3999999999999999999999 99999999974  4677899999999999999862 489999999999999999988


Q ss_pred             ce--eeeeeccccccceeEEEecC--CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC----
Q 001311          880 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----  951 (1102)
Q Consensus       880 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd----  951 (1102)
                      ++  .+..+.+|...|.+++|+|+  +.+|++++.|++|++||+..+.....   ....+|.   ..|.+++|+|+    
T Consensus        87 ~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~---~~~~~h~---~~v~~~~~~p~~~~~  160 (297)
T 2pm7_B           87 GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP---IIIDAHA---IGVNSASWAPATIEE  160 (297)
T ss_dssp             SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC---EEEECCS---SCEEEEEECCCC---
T ss_pred             CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee---eeeeccc---CccceEeecCCcccc
Confidence            74  56678889999999999998  89999999999999999987532211   2223443   37899999997    


Q ss_pred             ---------CcEEEE-EeCCeEEEEEcCCce----EeeeeccCCCCCCeeEEEEcCCC---cEEEEEeCCCeEEEEEcCC
Q 001311          952 ---------QIHFLV-VHETQLAIFETTKLE----CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       952 ---------g~~l~~-~~d~~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~~spd~---~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                               +++|++ +.|+.|++||+.+++    ....+  .+|...|.+++|+|++   .+|++++.|++|+|||+.+
T Consensus       161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l--~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL--EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE--CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe--cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence                     568888 489999999998765    44444  4899999999999995   8999999999999999987


Q ss_pred             cee--EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1015 LKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1015 ~~~--~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      +..  .....    ...+| ...++  +++|+| ++++|++++.||.|++|+...
T Consensus       239 ~~~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          239 EQGPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             TTSCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEETTSCEEEEEECT
T ss_pred             CCCccceeee----ecccC-CCcEE--EEEECC-CCCEEEEEcCCCcEEEEEECC
Confidence            531  11111    01122 22255  899999 689999999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=7.2e-31  Score=306.44  Aligned_cols=273  Identities=12%  Similarity=0.194  Sum_probs=203.4

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC------------CC
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG------------VS  410 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~  410 (1102)
                      +.|.+.|++++|+|+|++ ||+|+.||.|+|||+.+++.......        ........+.+|.            +.
T Consensus        25 ~~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~   95 (447)
T 3dw8_B           25 VAEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEK   95 (447)
T ss_dssp             CCGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCC
T ss_pred             ccccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCc
Confidence            457899999999999996 99999999999999998763110000        0000011467888            88


Q ss_pred             eEEEEEccCC--CeEEEEECCCeEEEEEccCCceee------------------------------------eEEE-eec
Q 001311          411 VNRVIWSPDG--SLFGVAYSRHIVQIYSYHGGDEVR------------------------------------QHLE-IDA  451 (1102)
Q Consensus       411 V~~l~~spdg--~~las~~~d~~v~vwd~~~~~~~~------------------------------------~~~~-l~~  451 (1102)
                      |.+++|+|++  .+|++++.|++|++||+.++....                                    .... ..+
T Consensus        96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (447)
T 3dw8_B           96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA  175 (447)
T ss_dssp             CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred             eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence            9999999998  899999999999999998754310                                    0112 368


Q ss_pred             cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC-CeeeE-------EeecCCCCeEEEeeeecCCc-cEEEEEeCCCe
Q 001311          452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-GAKQY-------IFEGHEAPVYSVCPHHKENI-QFIFSTALDGK  522 (1102)
Q Consensus       452 h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~-~~~~~-------~~~~h~~~v~~v~~~~~~~~-~~l~s~s~dg~  522 (1102)
                      |...|.+++|+|+++  +|++| .|+.|++||+.+ ++.+.       .+.+|...|.+++|++  ++ .+|++|+.||.
T Consensus       176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~  250 (447)
T 3dw8_B          176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGT  250 (447)
T ss_dssp             CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSC
T ss_pred             CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCe
Confidence            999999999999999  78888 799999999994 44444       2568999999999864  44 79999999999


Q ss_pred             EEEEEcCCCCC----eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-cceE
Q 001311          523 IKAWLYDNLGS----RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLL  597 (1102)
Q Consensus       523 i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~  597 (1102)
                      |++||+++...    ...+..+....        ....+. .....+.+++|+|++++|++++. +.|++||+.+ ++.+
T Consensus       251 i~iwd~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~  320 (447)
T 3dw8_B          251 IRLCDMRASALCDRHSKLFEEPEDPS--------NRSFFS-EIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV  320 (447)
T ss_dssp             EEEEETTTCSSSCTTCEEECCC-------------CCHHH-HHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS
T ss_pred             EEEEECcCCccccceeeEeccCCCcc--------cccccc-ccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc
Confidence            99999998765    44444443210        000000 11136667777777788999998 9999999997 8888


Q ss_pred             EEEcCCCCCCC-------------cCeEEEcCCCCEEEEEECCCcEEEEEccCCc
Q 001311          598 TSIDADGGLPA-------------SPRIRFNKDGCLLAVSTNDNGIKILATSDGI  639 (1102)
Q Consensus       598 ~~~~~~~~~~~-------------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~  639 (1102)
                      ..+..+.....             +..++|+|++++|++++.||.|++||+.++.
T Consensus       321 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~  375 (447)
T 3dw8_B          321 ETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR  375 (447)
T ss_dssp             CCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred             ceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence            88876643111             2349999999999999999999999999873

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.3e-31  Score=293.69  Aligned_cols=226  Identities=19%  Similarity=0.303  Sum_probs=175.4

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIK  480 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~  480 (1102)
                      ++.+|.+.|++++|+|+|++||+|+.|++|+|||+.++... ....+.+|.+.|.+++|+++  ++  +|++|+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence            57899999999999999999999999999999999987532 23468899999999999864  66  799999999999


Q ss_pred             EEeCCCCe--eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCC---eeeecCCCCeeeEEEEccCCce
Q 001311          481 VWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGS---RVDYEAPGRWCTTMAYSADGTR  555 (1102)
Q Consensus       481 vWd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~~~~~  555 (1102)
                      +||+++++  .+..+.+|...|.+++|+++.++.+|++|+.|++|++||++....   ...+..|...+.+++|+|++..
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99999874  667888999999999998766678999999999999999987543   2345667778888888887420


Q ss_pred             -eeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc---ceEEEEcCCCCCCCcCeEEEcCCC----CEEEEEECC
Q 001311          556 -TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGLPASPRIRFNKDG----CLLAVSTND  627 (1102)
Q Consensus       556 -~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d  627 (1102)
                       .+..+..+     ....++.+|++++.|+.|++||+..+   +.+..+.+|  ...|.+++|+|++    .+|++++.|
T Consensus       165 ~~~~~~~~~-----~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          165 GSLIDHPSG-----QKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ------CCS-----CCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             ccccccccc-----cCccccceEEEecCCCeEEEEEeCCCCccceeeecccC--CCceEEEEecCCCCCCCceEEEEcCC
Confidence             00000000     01122468999999999999999755   345555544  4579999999986    899999999


Q ss_pred             CcEEEEEccCC
Q 001311          628 NGIKILATSDG  638 (1102)
Q Consensus       628 g~i~iwd~~~~  638 (1102)
                      |+|++|++.+.
T Consensus       238 ~~v~iw~~~~~  248 (316)
T 3bg1_A          238 GRVFIWTCDDA  248 (316)
T ss_dssp             CEEEEEECSST
T ss_pred             CeEEEEEccCc
Confidence            99999998653

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=6.8e-32  Score=297.99  Aligned_cols=255  Identities=16%  Similarity=0.195  Sum_probs=201.0

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CC
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DG  420 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg  420 (1102)
                      .+|.+.|++++|+|+|++ ||+|+.|++|+|||+.+++....                 ..+.+|.+.|.+++|+|  ++
T Consensus        10 ~~H~~~V~~v~~s~~g~~-lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~~~~   71 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTR-LATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHPMYG   71 (316)
T ss_dssp             ----CCEEEEEECGGGCE-EEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCGGGS
T ss_pred             ccccCeEEEeeEcCCCCE-EEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCCCCC
Confidence            369999999999999996 99999999999999987753211                 13779999999999986  49


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCee---eEEeec
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAK---QYIFEG  495 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~~---~~~~~~  495 (1102)
                      ++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+  +.  +|++|+.|++|++||+.++..   ...+.+
T Consensus        72 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~  148 (316)
T 3bg1_A           72 NILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNA  148 (316)
T ss_dssp             SCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred             CEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence            99999999999999999987422 23357899999999999998  56  799999999999999987632   355678


Q ss_pred             CCCCeEEEeeeecC---------------CccEEEEEeCCCeEEEEEcCCCC---CeeeecCCCCeeeEEEEccCCceee
Q 001311          496 HEAPVYSVCPHHKE---------------NIQFIFSTALDGKIKAWLYDNLG---SRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       496 h~~~v~~v~~~~~~---------------~~~~l~s~s~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      |...|.+++|++..               ++.+|++|+.|++|++||++...   ....+..|...|.+++|+|++..  
T Consensus       149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~--  226 (316)
T 3bg1_A          149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGL--  226 (316)
T ss_dssp             SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSC--
T ss_pred             ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCC--
Confidence            99999999987642               14689999999999999997542   33455666666666666665410  


Q ss_pred             eccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc----eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ----LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL  633 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  633 (1102)
                                     ++++|++++.|++|++|++.+..    ....+..+  ...|.+++|+|++++|++++.||.|++|
T Consensus       227 ---------------~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw  289 (316)
T 3bg1_A          227 ---------------PTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLW  289 (316)
T ss_dssp             ---------------SCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEE
T ss_pred             ---------------CCceEEEEcCCCeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence                           12579999999999999987631    12223333  3479999999999999999999999999


Q ss_pred             EccC
Q 001311          634 ATSD  637 (1102)
Q Consensus       634 d~~~  637 (1102)
                      +...
T Consensus       290 ~~~~  293 (316)
T 3bg1_A          290 KESV  293 (316)
T ss_dssp             EECT
T ss_pred             EECC
Confidence            9753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=1.8e-30  Score=291.67  Aligned_cols=226  Identities=12%  Similarity=0.131  Sum_probs=180.6

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCcee-eeEEEeeccccCEEEEEEcC--CCCeeEEEEecCCCcE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSH--PNKQLCVITCGDDKTI  479 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~--d~~~~~l~s~~~d~~i  479 (1102)
                      ++.+|.+.|++++|+|++++||+|+.||.|+|||+.++... .....+.+|...|++++|+|  |+.  +|++++.|+.|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v   83 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV   83 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence            67899999999999999999999999999999999976432 34456789999999999999  577  79999999999


Q ss_pred             EEEeCCCC---------eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEc
Q 001311          480 KVWDATNG---------AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  550 (1102)
Q Consensus       480 ~vWd~~~~---------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  550 (1102)
                      ++||+.++         +.+..+.+|...|.+++|++..++.+|++++.||.|++||+++......+... ..+..+.+.
T Consensus        84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~~~  162 (351)
T 3f3f_A           84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT-SEMKVLSIP  162 (351)
T ss_dssp             EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE-EEEESCSCC
T ss_pred             EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc-ccccccccc
Confidence            99999987         66888899999999999976533689999999999999999887655433210 001111111


Q ss_pred             cCCceeeeccccCceeEEEEcCC---CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCC----CEEEE
Q 001311          551 ADGTRTYQGFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDG----CLLAV  623 (1102)
Q Consensus       551 ~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~  623 (1102)
                      +       ......+.+++|+|+   +.++++++.++.+.+|+...++.........+...|.+++|+|++    ++|++
T Consensus       163 ~-------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          163 P-------ANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             C-------SSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEE
T ss_pred             c-------CCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEE
Confidence            1       122346777788776   789999999999999988887763333333445589999999998    89999


Q ss_pred             EECCCcEEEEEccCC
Q 001311          624 STNDNGIKILATSDG  638 (1102)
Q Consensus       624 ~~~dg~i~iwd~~~~  638 (1102)
                      ++.||.|++||+.++
T Consensus       236 ~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          236 GCKDGRIRIFKITEK  250 (351)
T ss_dssp             EETTSCEEEEEEEEC
T ss_pred             EcCCCeEEEEeCCCC
Confidence            999999999998765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.98  E-value=3.7e-30  Score=288.47  Aligned_cols=294  Identities=13%  Similarity=0.105  Sum_probs=230.7

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      +..+|.+.|.+++|+|++++|++++.|+.|+|||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++|
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~w   84 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEE
Confidence            45689999999999999999999999999999999988733333346689999999999999882 38899999999999


Q ss_pred             eC-CCCeeeEEeec--CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC---------CCCeeeecCCCCeeeEEEEc
Q 001311          483 DA-TNGAKQYIFEG--HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN---------LGSRVDYEAPGRWCTTMAYS  550 (1102)
Q Consensus       483 d~-~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s  550 (1102)
                      |+ .+++. ..+.+  |...|.+++|++   +.+|++++.|+.|++||+++         ......+. +..        
T Consensus        85 d~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~--------  151 (342)
T 1yfq_A           85 DLIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKN--------  151 (342)
T ss_dssp             CSSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCC--------
T ss_pred             EeccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCC--------
Confidence            99 77754 77888  999999999975   57999999999999999886         44333332 333        


Q ss_pred             cCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-cceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCC
Q 001311          551 ADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-VQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN  628 (1102)
Q Consensus       551 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg  628 (1102)
                                   .+.++++++++  +++++.|+.|++||+.+ +..........+...+.+++|+| +++++++++.||
T Consensus       152 -------------~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg  216 (342)
T 1yfq_A          152 -------------KIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDG  216 (342)
T ss_dssp             -------------CEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTS
T ss_pred             -------------ceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCC
Confidence                         45555566554  89999999999999988 55322222223344799999999 999999999999


Q ss_pred             cEEEEEccCC-----ccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCC
Q 001311          629 GIKILATSDG-----IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  703 (1102)
Q Consensus       629 ~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1102)
                      .|++|+....     ......+..|..                                                     
T Consensus       217 ~i~i~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------  243 (342)
T 1yfq_A          217 RVAVEFFDDQGDDYNSSKRFAFRCHRL-----------------------------------------------------  243 (342)
T ss_dssp             EEEEEECCTTCCSTTCTTCEEEECCCC-----------------------------------------------------
T ss_pred             cEEEEEEcCCCcccccccceeeecccc-----------------------------------------------------
Confidence            9999997654     011111110000                                                     


Q ss_pred             ccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccc
Q 001311          704 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASV  783 (1102)
Q Consensus       704 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~  783 (1102)
                                                           .                                          
T Consensus       244 -------------------------------------~------------------------------------------  244 (342)
T 1yfq_A          244 -------------------------------------N------------------------------------------  244 (342)
T ss_dssp             -------------------------------------C------------------------------------------
T ss_pred             -------------------------------------c------------------------------------------
Confidence                                                 0                                          


Q ss_pred             cceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCc
Q 001311          784 APQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNN  861 (1102)
Q Consensus       784 ~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~  861 (1102)
                                      ..+..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+.+| ...|.+++  | +++
T Consensus       245 ----------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~  305 (342)
T 1yfq_A          245 ----------------LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDN  305 (342)
T ss_dssp             ----------------TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSS
T ss_pred             ----------------ccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCC
Confidence                            00012677899999999999999998 899999999999999999998 99999999  7 899


Q ss_pred             EEEEEeCCCc-EEEEE
Q 001311          862 IIAIGMDDSS-IQIYN  876 (1102)
Q Consensus       862 ~lasg~~dg~-v~vwd  876 (1102)
                      +|++|+.||. .+.|.
T Consensus       306 ~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          306 ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEEEECTHHHHCSS
T ss_pred             eEEEEecCCccccccc
Confidence            9999999998 44433

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.98  E-value=3.6e-30  Score=291.75  Aligned_cols=301  Identities=16%  Similarity=0.150  Sum_probs=235.4

Q ss_pred             ccCCCCCCeEEEEEccC---CCeEEEEECCCeEEEEEccC-CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc
Q 001311          403 LVKDPGVSVNRVIWSPD---GSLFGVAYSRHIVQIYSYHG-GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT  478 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spd---g~~las~~~d~~v~vwd~~~-~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~  478 (1102)
                      .+.+|.+.|++++|+|+   |++|++|+.||.|+|||+.+ +..+.  ..+.+|.+.|.+++|+|+++  +|++++.|+.
T Consensus        34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~  109 (368)
T 3mmy_A           34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP--KAQQMHTGPVLDVCWSDDGS--KVFTASCDKT  109 (368)
T ss_dssp             CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE--EEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred             eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE--EEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence            58899999999999999   69999999999999999998 44332  35778999999999999999  7999999999


Q ss_pred             EEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311          479 IKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       479 i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      |++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+++.+....+..+. .+.++.+         
T Consensus       110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~---------  178 (368)
T 3mmy_A          110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADV---------  178 (368)
T ss_dssp             EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEE---------
T ss_pred             EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEe---------
Confidence            9999999998776 5569999999999777888999999999999999999877766655443 2222222         


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE----EEEEECCCcEEEEE
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL----LAVSTNDNGIKILA  634 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd  634 (1102)
                                  .  ...+++++.++.+++|++.................+.++.+.++...    +++++.||.|++|+
T Consensus       179 ------------~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          179 ------------I--YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             ------------E--TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             ------------c--CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence                        2  24688899999999999988765544433333345666777665554    99999999999999


Q ss_pred             ccCCcc--ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311          635 TSDGIR--LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  712 (1102)
Q Consensus       635 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  712 (1102)
                      +.....  ....+.+|...                                                             
T Consensus       245 ~~~~~~~~~~~~~~~~~~~-------------------------------------------------------------  263 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSN-------------------------------------------------------------  263 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC-------------------------------------------------------------
T ss_pred             cCCCCccccceeeeeeecc-------------------------------------------------------------
Confidence            876521  11111111100                                                             


Q ss_pred             ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311          713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  792 (1102)
Q Consensus       713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~  792 (1102)
                                                   .         .  .                                     
T Consensus       264 -----------------------------~---------~--~-------------------------------------  266 (368)
T 3mmy_A          264 -----------------------------G---------T--N-------------------------------------  266 (368)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------c---------c--c-------------------------------------
Confidence                                         0         0  0                                     


Q ss_pred             ccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCc
Q 001311          793 GIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS  871 (1102)
Q Consensus       793 ~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~  871 (1102)
                             .....|...|.+++|+|++++|++++ ||.|++||+.+++++..+.+|...|++++|+| ++++|++|+.|+.
T Consensus       267 -------~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~  338 (368)
T 3mmy_A          267 -------TSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW  338 (368)
T ss_dssp             --------CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred             -------ccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence                   00011556799999999999999998 99999999999999999999999999999999 9999999999986


Q ss_pred             EEEEEee
Q 001311          872 IQIYNVR  878 (1102)
Q Consensus       872 v~vwd~~  878 (1102)
                      .+.|++.
T Consensus       339 ~~~~~~~  345 (368)
T 3mmy_A          339 SKGHEFY  345 (368)
T ss_dssp             TTCGGGC
T ss_pred             ccccccc
Confidence            6655543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=8.7e-30  Score=295.47  Aligned_cols=233  Identities=20%  Similarity=0.340  Sum_probs=203.1

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  423 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  423 (1102)
                      +|...|.|++|  ++++ +++|+.||+|+|||+.+++.+.                   .+.+|.+.|.+++|  ++++|
T Consensus       131 ~~~~~v~~~~~--d~~~-l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l  186 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI  186 (435)
T ss_dssp             SSCCCEEEEEC--CSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred             CCCCcEEEEEE--CCCE-EEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence            46778998887  7885 9999999999999999988776                   37899999999999  89999


Q ss_pred             EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee---EEeecCCCCe
Q 001311          424 GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ---YIFEGHEAPV  500 (1102)
Q Consensus       424 as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~---~~~~~h~~~v  500 (1102)
                      ++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  .  ++++|+.|+.|++||+.++..+   ..+.+|...|
T Consensus       187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v  259 (435)
T 1p22_A          187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV  259 (435)
T ss_dssp             EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred             EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence            999999999999999998655   5788999999999974  4  6999999999999999988766   6788999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .+++|    ++.++++|+.||.|++||+++......+..+...+.++.+.                       +++++++
T Consensus       260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-----------------------~~~l~~g  312 (435)
T 1p22_A          260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR-----------------------DRLVVSG  312 (435)
T ss_dssp             EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE-----------------------TTEEEEE
T ss_pred             EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC-----------------------CCEEEEE
Confidence            99987    34799999999999999999988877777776666665552                       3579999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +.||.|++||+.+++++..+..+..  .|.+++|  ++.+|++|+.||.|++||+.++
T Consensus       313 ~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~  366 (435)
T 1p22_A          313 SSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DNKRIVSGAYDGKIKVWDLVAA  366 (435)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSS--CEEEEEC--CSSEEEEEETTSCEEEEEHHHH
T ss_pred             eCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEe--cCCEEEEEeCCCcEEEEECCCC
Confidence            9999999999999999999986644  7888888  8899999999999999998665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=5e-30  Score=290.56  Aligned_cols=250  Identities=18%  Similarity=0.205  Sum_probs=198.5

Q ss_pred             eccCCCCeeEEEEecC---CCeEEEEEecCCeEEEEeCCC-CeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEc
Q 001311          342 TLNQGSSPMSMDFHPV---QQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWS  417 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spd---g~~llasg~~d~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s  417 (1102)
                      ..+|.+.|++++|+|+   |+ +|++|+.||.|+|||+.+ ++.+..                  .+.+|.+.|.+++|+
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~~v~~~~~~   95 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTGPVLDVCWS   95 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSSCEEEEEEC
T ss_pred             ccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccCCEEEEEEC
Confidence            4469999999999999   47 599999999999999997 544422                  467899999999999


Q ss_pred             cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEE--cCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec
Q 001311          418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAF--SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  495 (1102)
Q Consensus       418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~--s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~  495 (1102)
                      |++++|++++.||.|++||+.+++.+.    +.+|...|.+++|  ++++.  +|++++.|+.|++||+++++.+..+..
T Consensus        96 ~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~  169 (368)
T 3mmy_A           96 DDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPMMVLQL  169 (368)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCSEEEEC
T ss_pred             cCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEEEEEec
Confidence            999999999999999999999987654    5679999999999  88888  799999999999999999999999987


Q ss_pred             CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC--CCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311          496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA--PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  573 (1102)
Q Consensus       496 h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  573 (1102)
                      |. .+.++.+.  .  ..+++++.++.+++|+++..........  ....+..+.+.++...                 .
T Consensus       170 ~~-~~~~~~~~--~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~  227 (368)
T 3mmy_A          170 PE-RCYCADVI--Y--PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-----------------K  227 (368)
T ss_dssp             SS-CEEEEEEE--T--TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-----------------C
T ss_pred             CC-CceEEEec--C--CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-----------------C
Confidence            65 55555543  3  4788899999999999987554332211  1122233333222210                 0


Q ss_pred             CCEEEEEeCCCeEEEEECCCc---ceEEEEcCCCCC----------CCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          574 KNRFLAAGDDFSIKFWDMDSV---QLLTSIDADGGL----------PASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       574 ~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~----------~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ...+++++.||.|++||+...   ..+..+..+...          ..|.+++|+|++++|++++.||.|++||+.++
T Consensus       228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~  305 (368)
T 3mmy_A          228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR  305 (368)
T ss_dssp             EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred             CCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC
Confidence            123899999999999999887   556666655321          15899999999999999999999999999876

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=2.5e-30  Score=289.85  Aligned_cols=245  Identities=9%  Similarity=0.007  Sum_probs=204.1

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC-e
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS-L  422 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~-~  422 (1102)
                      +|.+.|++++|+|++++ |++|+.|+.|+|||+.+++....                ...+.+|...|.+++|+|+++ +
T Consensus         9 ~h~~~v~~~~~s~~~~~-l~~~~~d~~v~iw~~~~~~~~~~----------------~~~~~~~~~~v~~~~~~~~~~~~   71 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ   71 (342)
T ss_dssp             CCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred             CCCCcEEEEEEcCCCCE-EEEEcCCCeEEEEEeCCCCcccc----------------ceeeeecCCceEEEEECCCCCcE
Confidence            59999999999999996 89999999999999988761110                002458999999999999999 9


Q ss_pred             EEEEECCCeEEEEEc-cCCceeeeEEEeec--cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC---------Ceee
Q 001311          423 FGVAYSRHIVQIYSY-HGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN---------GAKQ  490 (1102)
Q Consensus       423 las~~~d~~v~vwd~-~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~---------~~~~  490 (1102)
                      |++|+.||.|++||+ .+++.    ..+.+  |...|.+++|+| +.  ++++++.|+.|++||+++         ++++
T Consensus        72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (342)
T 1yfq_A           72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS  144 (342)
T ss_dssp             EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred             EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence            999999999999999 88764    24778  999999999999 77  799999999999999988         7777


Q ss_pred             EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC-CCCee--eecCCCCeeeEEEEccCCceeeeccccCceeE
Q 001311          491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-LGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV  567 (1102)
Q Consensus       491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~-~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~  567 (1102)
                      ..+. |...|.+++|+  +++  +++++.|+.|++||+++ .....  ....+.                     ..+.+
T Consensus       145 ~~~~-~~~~v~~~~~~--~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---------------------~~i~~  198 (342)
T 1yfq_A          145 NNTK-VKNKIFTMDTN--SSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLK---------------------YQIRD  198 (342)
T ss_dssp             SSSS-SCCCEEEEEEC--SSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCS---------------------SCEEE
T ss_pred             eEEe-eCCceEEEEec--CCc--EEEEeCCCeEEEEECCccccccceeeecCCC---------------------CceeE
Confidence            7777 89999999985  433  99999999999999987 44321  112222                     35566


Q ss_pred             EEEcC-CCCEEEEEeCCCeEEEEECCCc------ceEEEEcCCCC-------CCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001311          568 VQFDT-TKNRFLAAGDDFSIKFWDMDSV------QLLTSIDADGG-------LPASPRIRFNKDGCLLAVSTNDNGIKIL  633 (1102)
Q Consensus       568 ~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-------~~~v~~~~~s~~~~~l~~~~~dg~i~iw  633 (1102)
                      ++|+| +++++++++.||.|++|+++..      +....+..+..       ...|.+++|+|++++|++++.||.|++|
T Consensus       199 i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vw  278 (342)
T 1yfq_A          199 VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW  278 (342)
T ss_dssp             EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             EEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEE
Confidence            66666 6778999999999999999887      77778876643       3479999999999999999999999999


Q ss_pred             EccCC
Q 001311          634 ATSDG  638 (1102)
Q Consensus       634 d~~~~  638 (1102)
                      |+.++
T Consensus       279 d~~~~  283 (342)
T 1yfq_A          279 NLQTR  283 (342)
T ss_dssp             ETTTT
T ss_pred             cCccH
Confidence            99877

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=3.1e-29  Score=277.72  Aligned_cols=283  Identities=17%  Similarity=0.279  Sum_probs=230.0

Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  820 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~  820 (1102)
                      ....++||+++  +++++.|++|+|||+.                      +|+.+.. +...+|...|.+++|+|++++
T Consensus        27 y~~~l~WS~~~--~lAvg~D~tV~iWd~~----------------------tg~~~~~-~~~~~~~~~V~~v~~~~~~~~   81 (318)
T 4ggc_A           27 YLNLVDWSSGN--VLAVALDNSVYLWSAS----------------------SGDILQL-LQMEQPGEYISSVAWIKEGNY   81 (318)
T ss_dssp             TCBCEEECTTS--EEEEEETTEEEEEETT----------------------TCCEEEE-EECCSTTCCEEEEEECTTSSE
T ss_pred             cceEEEECCCC--EEEEEeCCEEEEEECC----------------------CCCEEEE-EEecCCCCeEEEEEECCCCCE
Confidence            34678999987  4555679999999863                      3333221 122348889999999999999


Q ss_pred             EEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc-eeeeeeccccccceeEEE
Q 001311          821 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHSKRITGLAF  898 (1102)
Q Consensus       821 las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~-~~~~~l~~h~~~V~~l~~  898 (1102)
                      |++|+ |++|++||+.+++++..+.+|...+.++.+.   +.++++|+.++.+++|+.... ..+..+.+|...+..++|
T Consensus        82 l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~---~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (318)
T 4ggc_A           82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRW  158 (318)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEE
T ss_pred             EEEEECCCcEEEeecCCceeEEEecCccceEEEeecC---CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEE
Confidence            99999 9999999999999999999999888876654   579999999999999998764 556778899999999999


Q ss_pred             ecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE---E-eCCeEEEEEcCCceEe
Q 001311          899 SHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV---V-HETQLAIFETTKLECV  974 (1102)
Q Consensus       899 s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~---~-~d~~i~iwd~~~~~~~  974 (1102)
                      ++++++|++++.|++|++||+.+++........ ...+.   ..|..++++|++..++.   + .++.|++||.......
T Consensus       159 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~  234 (318)
T 4ggc_A          159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT-FTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL  234 (318)
T ss_dssp             CTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE-ECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE
T ss_pred             cCCCCEEEEEecCcceeEEECCCCcccccceee-ecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc
Confidence            999999999999999999999987643322222 12222   47889999998765443   2 5789999999998877


Q ss_pred             eeeccCCCCCCeeEEEEcCCCcEEEEEe--CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEE
Q 001311          975 KQWVPRESSAPITHATFSCDSQLVYACF--LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1052 (1102)
Q Consensus       975 ~~~~~~~h~~~v~~l~~spd~~~l~s~s--~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~ 1052 (1102)
                      ...   .|...+..++|++++..+++++  .|+.|+|||+.+++.+.++.       +|... |.  +++|+| |+.+|+
T Consensus       235 ~~~---~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~-------gH~~~-V~--~l~~sp-dg~~l~  300 (318)
T 4ggc_A          235 SAV---DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELK-------GHTSR-VL--SLTMSP-DGATVA  300 (318)
T ss_dssp             EEE---ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEEC-------CCSSC-EE--EEEECT-TSSCEE
T ss_pred             ccc---cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEc-------CCCCC-EE--EEEEcC-CCCEEE
Confidence            665   3577899999999999988765  79999999999999999887       55444 66  899999 689999


Q ss_pred             EEecCCcEEEEeccCCC
Q 001311         1053 LGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1053 s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      ||+.||+|+|||+.+.+
T Consensus       301 S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          301 SAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEETTTEEEEECCSCCC
T ss_pred             EEecCCeEEEEECCCCC
Confidence            99999999999997654

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=8.3e-30  Score=295.63  Aligned_cols=276  Identities=21%  Similarity=0.318  Sum_probs=228.7

Q ss_pred             eeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEc
Q 001311          449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY  528 (1102)
Q Consensus       449 l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~  528 (1102)
                      ..+|...|.+++|  +++  ++++|+.||.|++||+.+++.+..+.+|.+.|.+++|    ++.+|++|+.||.|++||+
T Consensus       129 ~~~~~~~v~~~~~--d~~--~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred             ccCCCCcEEEEEE--CCC--EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence            4467788999888  677  7999999999999999999999999999999999987    4579999999999999999


Q ss_pred             CCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceE---EEEcCCCC
Q 001311          529 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGG  605 (1102)
Q Consensus       529 ~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~  605 (1102)
                      .+++....+..|...|.++.|++                       +.+++++.||.|++||+.++...   ..+..+  
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~~-----------------------~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--  255 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFNN-----------------------GMMVTCSKDRSIAVWDMASPTDITLRRVLVGH--  255 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCT-----------------------TEEEEEETTSCEEEEECSSSSCCEEEEEECCC--
T ss_pred             CCCcEEEEEcCCCCcEEEEEEcC-----------------------CEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--
Confidence            99888777777777666666542                       36999999999999999988765   444444  


Q ss_pred             CCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccc
Q 001311          606 LPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAAS  685 (1102)
Q Consensus       606 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (1102)
                      ...|.+++|  ++++|++++.||.|++||+.++ +.+..+.                                       
T Consensus       256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~---------------------------------------  293 (435)
T 1p22_A          256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLN---------------------------------------  293 (435)
T ss_dssp             SSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEE---------------------------------------
T ss_pred             CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcC-cEEEEEc---------------------------------------
Confidence            447888888  7889999999999999998665 2211110                                       


Q ss_pred             ccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEe
Q 001311          686 MVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL  765 (1102)
Q Consensus       686 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~i  765 (1102)
                                                                                                      
T Consensus       294 --------------------------------------------------------------------------------  293 (435)
T 1p22_A          294 --------------------------------------------------------------------------------  293 (435)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec
Q 001311          766 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM  844 (1102)
Q Consensus       766 w~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~  844 (1102)
                                                            +|...|.++++  +++++++++ ||.|++||+.+++++..+.
T Consensus       294 --------------------------------------~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~  333 (435)
T 1p22_A          294 --------------------------------------GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLE  333 (435)
T ss_dssp             --------------------------------------CCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             --------------------------------------CCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEe
Confidence                                                  14555667776  467888888 8999999999999999999


Q ss_pred             CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce---------eeeeeccccccceeEEEecCCCEEEEEcCCCcEE
Q 001311          845 PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE---------VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC  915 (1102)
Q Consensus       845 ~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~---------~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~  915 (1102)
                      +|...|.+++|   ++.+|++|+.||.|++||+.+++         ++..+.+|.+.|++++|  ++++|++++.||+|+
T Consensus       334 ~h~~~v~~~~~---~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~  408 (435)
T 1p22_A          334 GHEELVRCIRF---DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTIL  408 (435)
T ss_dssp             CCSSCEEEEEC---CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEE
T ss_pred             CCcCcEEEEEe---cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEE
Confidence            99999999998   46799999999999999998876         78889999999999999  788999999999999


Q ss_pred             EEEcCCCcc
Q 001311          916 VWSSDGWEK  924 (1102)
Q Consensus       916 vwd~~~~~~  924 (1102)
                      +||+.+...
T Consensus       409 iwd~~~~~~  417 (435)
T 1p22_A          409 IWDFLNDPA  417 (435)
T ss_dssp             EEC------
T ss_pred             EEECCCCCC
Confidence            999987543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.3e-30  Score=295.75  Aligned_cols=254  Identities=15%  Similarity=0.221  Sum_probs=202.9

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-CCCeEEE
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-DGSLFGV  425 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~las  425 (1102)
                      .....++++|+...++++|+.||.|+||++.......               .....+.+|.+.|.+++|+| ++++||+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~---------------~~~~~~~~h~~~V~~~~~~p~~~~~l~s   99 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD---------------KNVPLVCGHTAPVLDIAWCPHNDNVIAS   99 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC---------------TTCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC---------------CCCceEecCCCCEEEEEeCCCCCCEEEE
Confidence            3456789999988777789999999999996643321               11124789999999999999 9999999


Q ss_pred             EECCCeEEEEEccCCcee----eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe--ecCCCC
Q 001311          426 AYSRHIVQIYSYHGGDEV----RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF--EGHEAP  499 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~----~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~--~~h~~~  499 (1102)
                      |+.||+|+|||+.++...    .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+  .+|...
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  178 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT  178 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence            999999999999987421    223458899999999999999843 7999999999999999999999999  889999


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee-cCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY-EAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      |.+++|+  +++.+|++++.||.|++||++++.....+ ..+..                    ..+..+.|+|++.+|+
T Consensus       179 v~~~~~~--~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~  236 (402)
T 2aq5_A          179 IYSVDWS--RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG--------------------TRPVHAVFVSEGKILT  236 (402)
T ss_dssp             EEEEEEC--TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS--------------------SSCCEEEECSTTEEEE
T ss_pred             eEEEEEC--CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC--------------------CcceEEEEcCCCcEEE
Confidence            9999985  46689999999999999999986655544 33332                    2344555666666788


Q ss_pred             EE---eCCCeEEEEECCCcce-EEEEcCCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCCc
Q 001311          579 AA---GDDFSIKFWDMDSVQL-LTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGI  639 (1102)
Q Consensus       579 ~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~  639 (1102)
                      ++   +.|+.|++||+.+++. +.... ..+...+.+++|+|++++|+++ +.||.|++|++.++.
T Consensus       237 ~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          237 TGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSST
T ss_pred             EeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCC
Confidence            88   6899999999988765 33332 2233468999999999999755 479999999998773

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-29  Score=288.21  Aligned_cols=253  Identities=17%  Similarity=0.210  Sum_probs=208.0

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCC--CeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS--RERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      +.+|.+.|++++|+|+|++ |++|+.||.|+|||+..  ++.+.                   .+.+|.+.|++++|+++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~   66 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP   66 (379)
T ss_dssp             EEECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCG
T ss_pred             ecCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeee-------------------EecCCCCcEEEEEeCCC
Confidence            4569999999999999996 99999999999999974  33333                   47799999999999987


Q ss_pred             --CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCe--eeEEe
Q 001311          420 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF  493 (1102)
Q Consensus       420 --g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~  493 (1102)
                        +++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.++.  ....+
T Consensus        67 ~~~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~  143 (379)
T 3jrp_A           67 KFGTILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII  143 (379)
T ss_dssp             GGCSEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEE
T ss_pred             CCCCEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEe
Confidence              999999999999999999998622 33457789999999999999  78  79999999999999999874  44567


Q ss_pred             ecCCCCeEEEeeeecC-----------CccEEEEEeCCCeEEEEEcCCCCCe----eeecCCCCeeeEEEEccCCceeee
Q 001311          494 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       494 ~~h~~~v~~v~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      .+|...|.+++|++..           ++.+|++++.||.|++||+++....    ..+..|...|              
T Consensus       144 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v--------------  209 (379)
T 3jrp_A          144 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV--------------  209 (379)
T ss_dssp             ECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE--------------
T ss_pred             cCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE--------------
Confidence            8899999999997632           5689999999999999999876543    2333444444              


Q ss_pred             ccccCceeEEEEcCC---CCEEEEEeCCCeEEEEECCCcc---eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311          559 GFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQ---LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  632 (1102)
                             .+++|+|+   +++|++++.||.|++||+.++.   ....+....+...|.+++|+|++++|++++.||.|++
T Consensus       210 -------~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~i  282 (379)
T 3jrp_A          210 -------RDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL  282 (379)
T ss_dssp             -------EEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEE
T ss_pred             -------eEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEE
Confidence                   44555555   5689999999999999998875   2333344345567999999999999999999999999


Q ss_pred             EEccCC
Q 001311          633 LATSDG  638 (1102)
Q Consensus       633 wd~~~~  638 (1102)
                      |++..+
T Consensus       283 w~~~~~  288 (379)
T 3jrp_A          283 WKENLE  288 (379)
T ss_dssp             EEEEET
T ss_pred             EeCCCC
Confidence            998765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.5e-29  Score=284.19  Aligned_cols=260  Identities=10%  Similarity=0.131  Sum_probs=207.8

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--C
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--D  419 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--d  419 (1102)
                      ..+|.+.|++++|+|++++ |++|+.||.|+|||+.++.....               ....+.+|...|.+++|+|  |
T Consensus         7 ~~gH~~~v~~~~~~~~~~~-l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d   70 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRH-VATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEY   70 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSE-EEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGG
T ss_pred             CcccccceeEEEEcCCCCE-EEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCC
Confidence            4579999999999999995 99999999999999987642211               0114678999999999999  6


Q ss_pred             CCeEEEEECCCeEEEEEccCCce------eeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCeeeE
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDE------VRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGAKQY  491 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~------~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~~~~  491 (1102)
                      +++|++|+.||.|++||+.+++.      ......+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.+++.+.
T Consensus        71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~  148 (351)
T 3f3f_A           71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR  148 (351)
T ss_dssp             CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred             CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence            99999999999999999988642      1334467899999999999999  88  79999999999999999887654


Q ss_pred             Eee-------------cCCCCeEEEeeeec-CCccEEEEEeCCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCce
Q 001311          492 IFE-------------GHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTR  555 (1102)
Q Consensus       492 ~~~-------------~h~~~v~~v~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~  555 (1102)
                      .+.             +|...+.+++|++. .++.++++++.|+.+.+|+......  ...+..|...|.+++|+|++.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~  228 (351)
T 3f3f_A          149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR  228 (351)
T ss_dssp             CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred             cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence            433             68889999998764 1357999999999998887766543  3344455555555555555410


Q ss_pred             eeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCc-----------------------------------------
Q 001311          556 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV-----------------------------------------  594 (1102)
Q Consensus       556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------------------------------------  594 (1102)
                                       .+++|++++.||.|++||+..+                                         
T Consensus       229 -----------------~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (351)
T 3f3f_A          229 -----------------WYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQ  291 (351)
T ss_dssp             -----------------SSEEEEEEETTSCEEEEEEEECC---------------------------------------C
T ss_pred             -----------------cceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeec
Confidence                             0057999999999999999865                                         


Q ss_pred             -----ceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          595 -----QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       595 -----~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                           +.+..+..|  ...|.+++|+|++++|++++.||.|++|++.++
T Consensus       292 ~~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          292 SNLQVELLSEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             CSEEEEEEEEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             ccccccEEEEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence                 455555544  447999999999999999999999999999887

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=287.21  Aligned_cols=335  Identities=11%  Similarity=0.148  Sum_probs=231.5

Q ss_pred             cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc-----------eEEEEcCCCCC----------CCcCeEEEcCCC--
Q 001311          562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ-----------LLTSIDADGGL----------PASPRIRFNKDG--  618 (1102)
Q Consensus       562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~----------~~v~~~~~s~~~--  618 (1102)
                      ...+.+++|+|++++|++|+.||.|++||+.+++           ....+.+|...          ..|.+++|+|++  
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            3577888888888899999999999999999877           46777766411          579999999998  


Q ss_pred             CEEEEEECCCcEEEEEccCCccceeecc--cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCc
Q 001311          619 CLLAVSTNDNGIKILATSDGIRLLRTFE--NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDV  696 (1102)
Q Consensus       619 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  696 (1102)
                      ..|++++.||.|++|++.++......+.  .+......        .....                             
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~--------~~~~~-----------------------------  150 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRD--------PTTVT-----------------------------  150 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC----------------CCCCC-----------------------------
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccC--------ccccc-----------------------------
Confidence            8999999999999999977532211111  00000000        00000                             


Q ss_pred             cccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCC
Q 001311          697 RSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSS  776 (1102)
Q Consensus       697 ~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~  776 (1102)
                          ... +-.....+    |.+..    ...+.+   ..+|...|.+++|+|+++.++++ .|+.|++||+.....   
T Consensus       151 ----~~~-~~~~~~~~----~~~~~----~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~---  210 (447)
T 3dw8_B          151 ----TLR-VPVFRPMD----LMVEA----SPRRIF---ANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDR---  210 (447)
T ss_dssp             ----SCC-CCEEEEEE----EEEEE----EEEEEE---CSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEE---
T ss_pred             ----ceE-eccccchh----eeeec----cceEEe---ccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCc---
Confidence                000 00000000    00000    000000   13488999999999999999998 899999999853110   


Q ss_pred             CcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC-CeEEEEe-CCeEEEEEcCCCce----eeeecCCCC--
Q 001311          777 GKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-SYVMSAS-GGKISLFNMMTFKT----MATFMPPPP--  848 (1102)
Q Consensus       777 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~~las~s-dg~I~iwd~~~~~~----~~~~~~~~~--  848 (1102)
                             ...+.+....     .+  .+|...|.+++|+|++ ++|++++ ||.|++||+.+++.    ...+.+|..  
T Consensus       211 -------~~~~~~~~~~-----~~--~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  276 (447)
T 3dw8_B          211 -------SFNIVDIKPA-----NM--EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPS  276 (447)
T ss_dssp             -------EEEEEECCCS-----SG--GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC----
T ss_pred             -------eeeeeecccc-----cc--cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCcc
Confidence                   0011111111     11  1388999999999998 9999999 99999999999887    788888876  


Q ss_pred             ----------CeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccc---------------eeEEEecCC
Q 001311          849 ----------AATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRI---------------TGLAFSHAL  902 (1102)
Q Consensus       849 ----------~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V---------------~~l~~s~d~  902 (1102)
                                .|.+++|+| ++++|++++. |.|++||+.+ ++++..+.+|...+               ..++|+|++
T Consensus       277 ~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~  354 (447)
T 3dw8_B          277 NRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD  354 (447)
T ss_dssp             -CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS
T ss_pred             ccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCC
Confidence                      899999999 9999999998 9999999997 88888998886432               249999999


Q ss_pred             CEEEEEcCCCcEEEEEcCCCcccceeeeec-------CC-----------------CCCCCCCCCcEEEEccCCcEEEEE
Q 001311          903 NVLVSSGADSQLCVWSSDGWEKQKNRFLQI-------PT-----------------GRTPTAQSDTRVQFHQDQIHFLVV  958 (1102)
Q Consensus       903 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~-------~~-----------------~~~~~~~~v~~~~~spdg~~l~~~  958 (1102)
                      ++|++++.||.|++||+.+++.........       ..                 ........|..++|+|++.+||++
T Consensus       355 ~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~  434 (447)
T 3dw8_B          355 SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVA  434 (447)
T ss_dssp             SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEE
T ss_pred             CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEE
Confidence            999999999999999999876432110000       00                 000112468899999999999998


Q ss_pred             eCCeEEEEEcC
Q 001311          959 HETQLAIFETT  969 (1102)
Q Consensus       959 ~d~~i~iwd~~  969 (1102)
                      ..+.+++|..+
T Consensus       435 ~~~~~~~~~~~  445 (447)
T 3dw8_B          435 TTNNLYIFQDK  445 (447)
T ss_dssp             CSSCEEEEECC
T ss_pred             ecceeeeeccc
Confidence            77789999754

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=3.7e-29  Score=287.01  Aligned_cols=288  Identities=14%  Similarity=0.117  Sum_probs=226.2

Q ss_pred             EEEEEccCCceEEE-eecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec-CCCe
Q 001311          743 SRLIFTNSGNAILA-LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSY  820 (1102)
Q Consensus       743 ~~~~~s~~g~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~  820 (1102)
                      ..++++|+...+++ ++.||.|++|++....                     ..........+|...|.+++|+| ++++
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~---------------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~   96 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTG---------------------RVDKNVPLVCGHTAPVLDIAWCPHNDNV   96 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCE---------------------ECCTTCCCBCCCSSCEEEEEECTTCTTE
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCC---------------------CCCCCCceEecCCCCEEEEEeCCCCCCE
Confidence            35778888765554 6779999999974321                     11000001123899999999999 9999


Q ss_pred             EEEEe-CCeEEEEEcCCC-------ceeeeecCCCCCeeEEEEecCCC-cEEEEEeCCCcEEEEEeecceeeeee--ccc
Q 001311          821 VMSAS-GGKISLFNMMTF-------KTMATFMPPPPAATFLAFHPQDN-NIIAIGMDDSSIQIYNVRVDEVKSKL--KGH  889 (1102)
Q Consensus       821 las~s-dg~I~iwd~~~~-------~~~~~~~~~~~~i~~l~~sp~d~-~~lasg~~dg~v~vwd~~~~~~~~~l--~~h  889 (1102)
                      |++++ ||.|++||+.++       +.+..+.+|...|.+++|+| ++ ++|++|+.||.|++||+.+++.+..+  .+|
T Consensus        97 l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~  175 (402)
T 2aq5_A           97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHP-TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH  175 (402)
T ss_dssp             EEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECS-SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTC
T ss_pred             EEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECc-CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCC
Confidence            99999 999999999987       56788999999999999999 65 79999999999999999999999999  889


Q ss_pred             cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE----eCCeEEE
Q 001311          890 SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAI  965 (1102)
Q Consensus       890 ~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----~d~~i~i  965 (1102)
                      ...|++++|+|++++|++++.|+.|++||+.+++...    ....+|..  ..+..++|+|++++|+++    .|+.|++
T Consensus       176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~l~~g~~~~~d~~i~i  249 (402)
T 2aq5_A          176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVA----EKDRPHEG--TRPVHAVFVSEGKILTTGFSRMSERQVAL  249 (402)
T ss_dssp             CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE----EEECSSCS--SSCCEEEECSTTEEEEEEECTTCCEEEEE
T ss_pred             CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceee----eeccCCCC--CcceEEEEcCCCcEEEEeccCCCCceEEE
Confidence            9999999999999999999999999999999865321    11133332  247899999999999997    6899999


Q ss_pred             EEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEE-EeCCCeEEEEEcCCcee-EEEeCCCcccCCCCCCCcccceEEEe
Q 001311          966 FETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-CFLDATVCVFSAANLKL-RCRINPSAYLPAGVSSSNVHPLVIAA 1043 (1102)
Q Consensus       966 wd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s-~s~Dg~I~vwd~~~~~~-~~~~~~~~~~~~gh~~~~v~~~~v~f 1043 (1102)
                      ||+.+++.........|...|.+++|+||+++|++ ++.||.|++||+.+++. +..+..  +.   | ...+.  +++|
T Consensus       250 wd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~--~~---~-~~~v~--~~~~  321 (402)
T 2aq5_A          250 WDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSM--FS---S-KESQR--GMGY  321 (402)
T ss_dssp             EETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEE--EC---C-SSCCS--EEEE
T ss_pred             EcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecc--cc---c-CCccc--ceEE
Confidence            99998765222222356788999999999999975 55799999999999884 433330  00   1 22255  8999


Q ss_pred             cCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1044 HPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1044 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +| ++.+++  +.|+.+++|++.+++
T Consensus       322 sp-~~~~~~--s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          322 MP-KRGLEV--NKCEIARFYKLHERK  344 (402)
T ss_dssp             CC-GGGSCG--GGTEEEEEEEEETTE
T ss_pred             ec-ccccce--ecceeEEEEEcCCCc
Confidence            99 566766  467899999998875

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.2e-28  Score=280.40  Aligned_cols=250  Identities=12%  Similarity=0.079  Sum_probs=207.8

Q ss_pred             CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCC--CcEEEEEeCCCcEEEEEeec
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~~  879 (1102)
                      |...|.+++|+|++++|++++ ||.|++||+.  +++.+..+.+|...|++++|++ +  +++|++|+.||.|++||+.+
T Consensus        10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~   88 (379)
T 3jrp_A           10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEEN   88 (379)
T ss_dssp             CCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSCEEEEEEET
T ss_pred             CcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCC-CCCCCEEEEeccCCEEEEEEcCC
Confidence            999999999999999999998 9999999998  6677788999999999999997 5  89999999999999999999


Q ss_pred             ce--eeeeeccccccceeEEEecC--CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc-----
Q 001311          880 DE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-----  950 (1102)
Q Consensus       880 ~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-----  950 (1102)
                      ++  .+..+.+|...|.+++|+|+  +.+|++++.|+.|++||+...........   .+|.   ..|.+++|+|     
T Consensus        89 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~~---~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           89 GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIEE  162 (379)
T ss_dssp             TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEE---ECCT---TCEEEEEECCCC---
T ss_pred             CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEe---cCCC---CceEEEEEcCccccc
Confidence            87  77888899999999999999  99999999999999999988654332222   2333   3789999999     


Q ss_pred             --------CCcEEEEE-eCCeEEEEEcCCceEe--eeeccCCCCCCeeEEEEcCC---CcEEEEEeCCCeEEEEEcCCce
Q 001311          951 --------DQIHFLVV-HETQLAIFETTKLECV--KQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus       951 --------dg~~l~~~-~d~~i~iwd~~~~~~~--~~~~~~~h~~~v~~l~~spd---~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
                              ++.+++++ .|+.|++||+.++...  ......+|...|.+++|+|+   +++|++++.||.|+|||+.++.
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                    68999985 8999999999876422  11223478999999999999   8999999999999999999874


Q ss_pred             eE--EEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1017 LR--CRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1017 ~~--~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      ..  ..+.    ...+| ...+.  +++|+| ++.+|++++.||.|++|++..+.
T Consensus       243 ~~~~~~~~----~~~~~-~~~v~--~~~~s~-~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          243 GPWKKTLL----KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             SCCEEEES----SSSCC-SSCEE--EEEECS-SSCCEEEEESSSSEEEEEEEETT
T ss_pred             ccceeeee----ccccC-CCcEE--EEEEcC-CCCEEEEecCCCcEEEEeCCCCC
Confidence            21  1111    11112 22244  899999 68999999999999999998654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=8.3e-28  Score=254.29  Aligned_cols=230  Identities=13%  Similarity=0.127  Sum_probs=173.5

Q ss_pred             cccceEEEEEccC----CceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEE
Q 001311          738 RATKISRLIFTNS----GNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  813 (1102)
Q Consensus       738 ~~~~i~~~~~s~~----g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~  813 (1102)
                      +...|..++|+||    ++.++.++.+  +.+|++                                             
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l---------------------------------------------  142 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL---------------------------------------------  142 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEE--EEEEEE---------------------------------------------
T ss_pred             cccceEEEEECCCccccccEEEeCCCe--EEEEec---------------------------------------------
Confidence            3467889999999    8888887744  556643                                             


Q ss_pred             EecCCCeEEEEe---CCeEEEEEc-CCCceeeeecCCCCCeeEEEEec--CCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311          814 LSKNDSYVMSAS---GGKISLFNM-MTFKTMATFMPPPPAATFLAFHP--QDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       814 ~s~d~~~las~s---dg~I~iwd~-~~~~~~~~~~~~~~~i~~l~~sp--~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  887 (1102)
                        ++++.+.++.   |+.|++|++ .+++.+..+.+|...++.++|++  .++.+||+|+.|++|+|||+.++++++++.
T Consensus       143 --~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~  220 (356)
T 2w18_A          143 --TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMH  220 (356)
T ss_dssp             --TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             --CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEc
Confidence              3566666643   899999999 45888888888999998888887  367999999999999999999999999998


Q ss_pred             ccc---ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEE
Q 001311          888 GHS---KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA  964 (1102)
Q Consensus       888 ~h~---~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~  964 (1102)
                      +|.   ..+.+++|+|||+++++++.+..  +|++.++                                   +.|++|+
T Consensus       221 g~~~~v~~v~~vafSpdG~~lvs~s~~~~--~w~laSG-----------------------------------s~D~tIk  263 (356)
T 2w18_A          221 IDDSYQASVCHKAYSEMGLLFIVLSHPCA--KESESLR-----------------------------------SPVFQLI  263 (356)
T ss_dssp             CCC---CCCEEEEEEETTEEEEEEC-------------------------------------------------CCEEEE
T ss_pred             CCCcceeeeEEEEECCCCCEEEEeccCCC--cceeecc-----------------------------------CCCcEEE
Confidence            754   35777899999999988876543  3544332                                   2567888


Q ss_pred             EEEcCCceEeeeec---cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEE
Q 001311          965 IFETTKLECVKQWV---PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1041 (1102)
Q Consensus       965 iwd~~~~~~~~~~~---~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 1041 (1102)
                      +||..+++.+..+.   ..+|...+.+..++  +.++|+++.|++|+|||+.+++++.++.       +|....+.  .+
T Consensus       264 lWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~-------gH~~~vvs--~v  332 (356)
T 2w18_A          264 VINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLP-------PVSDQHWS--FV  332 (356)
T ss_dssp             EEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEEC-------CC--CCCC--EE
T ss_pred             EEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEec-------CCCCCeEE--EE
Confidence            89888888776542   34676666555554  8899999999999999999999999887       44444333  58


Q ss_pred             EecCCCCCEEEEEecCCcEEEEec
Q 001311         1042 AAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1042 ~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                      +|+| |+++|++|+.|++|+|||+
T Consensus       333 afSP-DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          333 KWSG-TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EECS-SSSEEEEECTTSCEEEEEE
T ss_pred             EECC-CCCEEEEEECCCcEEEecC
Confidence            9999 6899999999999999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.97  E-value=2e-27  Score=275.98  Aligned_cols=356  Identities=15%  Similarity=0.215  Sum_probs=254.8

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE---EccCCC
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI---WSPDGS  421 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~---~spdg~  421 (1102)
                      ....|..+.|+|....++..+.......++...                             ....+..++   |+|+++
T Consensus        26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~   76 (433)
T 3bws_A           26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE   76 (433)
T ss_dssp             -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred             CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence            455788889999765444443322223333221                             122445555   666655


Q ss_pred             eEEEE--------------ECCCeEEEEEcc--CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311          422 LFGVA--------------YSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  485 (1102)
Q Consensus       422 ~las~--------------~~d~~v~vwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~  485 (1102)
                      .++..              +.++.+.||.++  ++. ......+..+ ..+.+++|+|++.  ++++++.|+.|++||+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~  152 (433)
T 3bws_A           77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN  152 (433)
T ss_dssp             EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred             EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence            55443              333433555543  342 2233334444 4566999999665  78888899999999999


Q ss_pred             CCeeeE-----EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecc
Q 001311          486 NGAKQY-----IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF  560 (1102)
Q Consensus       486 ~~~~~~-----~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~  560 (1102)
                      +++.+.     .+.+|.+.|.+++|  .+++.++++++.|+.|++||+++.+....+..+...+.+++|++++       
T Consensus       153 ~g~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-------  223 (433)
T 3bws_A          153 SGQTVRLSPPEKYKKKLGFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIR-------  223 (433)
T ss_dssp             TCCEEEECCCHHHHTTCCEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTT-------
T ss_pred             CCeEeeecCcccccccCCceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCC-------
Confidence            999887     44578999999998  4556899999999999999999877776666666556666665555       


Q ss_pred             ccCceeEEEEcCCCCEEE-EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE--------CCCcEE
Q 001311          561 RKRSLGVVQFDTTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST--------NDNGIK  631 (1102)
Q Consensus       561 ~~~~i~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------~dg~i~  631 (1102)
                                    +.++ +++.|+.|++||+.+++.+..+..+.   .+.+++|+|++++|++++        .||.|+
T Consensus       224 --------------~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~  286 (433)
T 3bws_A          224 --------------DLVYCSNWISEDISVIDRKTKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLG  286 (433)
T ss_dssp             --------------TEEEEEETTTTEEEEEETTTTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEE
T ss_pred             --------------CEEEEEecCCCcEEEEECCCCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEE
Confidence                          4564 45589999999999999888776543   488999999999999887        366777


Q ss_pred             EEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCC
Q 001311          632 ILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN  711 (1102)
Q Consensus       632 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  711 (1102)
                      +||+.++ +....+                                                                  
T Consensus       287 ~~d~~~~-~~~~~~------------------------------------------------------------------  299 (433)
T 3bws_A          287 IYSMDKE-KLIDTI------------------------------------------------------------------  299 (433)
T ss_dssp             EEETTTT-EEEEEE------------------------------------------------------------------
T ss_pred             EEECCCC-cEEeec------------------------------------------------------------------
Confidence            7776544 111000                                                                  


Q ss_pred             CccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCC
Q 001311          712 DKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP  791 (1102)
Q Consensus       712 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~  791 (1102)
                                                                                                      
T Consensus       300 --------------------------------------------------------------------------------  299 (433)
T 3bws_A          300 --------------------------------------------------------------------------------  299 (433)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccccCCCCCCCCeeEEEEecCCCeEE-EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC-
Q 001311          792 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-  868 (1102)
Q Consensus       792 ~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la-s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-  868 (1102)
                                  .+...+.+++|+|+++.++ +++ ++.|++||+.+++.+..+. +...+.+++|+| ++++|++++. 
T Consensus       300 ------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~  365 (433)
T 3bws_A          300 ------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVSCRG  365 (433)
T ss_dssp             ------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEECC
T ss_pred             ------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEEecC
Confidence                        0122355677788886554 434 7899999999888877776 667799999999 8888888876 


Q ss_pred             --------------CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCC
Q 001311          869 --------------DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDG  921 (1102)
Q Consensus       869 --------------dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~  921 (1102)
                                    ||.|++||+.+++.+..+..+ ..+.+++|+||+++|++++. |+.|++|+++.
T Consensus       366 ~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          366 PNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             CCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             CCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence                          579999999999988888764 56899999999999988765 99999999864

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=3.4e-27  Score=269.84  Aligned_cols=227  Identities=15%  Similarity=0.132  Sum_probs=179.9

Q ss_pred             CeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE-EEEECCCeEEEEEc
Q 001311          359 QTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSY  437 (1102)
Q Consensus       359 ~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~v~vwd~  437 (1102)
                      ++++++++.|+.|++||+.+++.+..                   +..|. .+.+++|+|+|++| ++++.|+.|++||+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~   61 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT   61 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence            35799999999999999999987763                   44454 58999999999987 56778999999999


Q ss_pred             cCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEE-EE
Q 001311          438 HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI-FS  516 (1102)
Q Consensus       438 ~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s  516 (1102)
                      .+++.+..   +..| ..|.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|+  ++++.+ ++
T Consensus        62 ~~~~~~~~---~~~~-~~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s--~dg~~l~~~  133 (391)
T 1l0q_A           62 ATNNVIAT---VPAG-SSPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS--PDGKKLYVT  133 (391)
T ss_dssp             TTTEEEEE---EECS-SSEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEEC--TTSSEEEEE
T ss_pred             CCCeEEEE---EECC-CCccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEEC--CCCCEEEEE
Confidence            99886653   4434 38999999999995 4466777899999999999999888755 467888875  455666 78


Q ss_pred             EeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE-EEEeCCCeEEEEECCCcc
Q 001311          517 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-LAAGDDFSIKFWDMDSVQ  595 (1102)
Q Consensus       517 ~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~  595 (1102)
                      ++.|+.|++||+.+++....+..+ .                     .+..++|+|+++++ ++++.++.|++||+.+++
T Consensus       134 ~~~~~~v~~~d~~~~~~~~~~~~~-~---------------------~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          134 NNGDKTVSVINTVTKAVINTVSVG-R---------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECC-S---------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             eCCCCEEEEEECCCCcEEEEEecC-C---------------------CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence            888999999999876655444332 2                     23445555555566 567789999999999998


Q ss_pred             eEEEEcCCCCCCCcCeEEEcCCCCEEEEEE---CCCcEEEEEccCC
Q 001311          596 LLTSIDADGGLPASPRIRFNKDGCLLAVST---NDNGIKILATSDG  638 (1102)
Q Consensus       596 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~  638 (1102)
                      .+..+....   .+.+++|+|++++|++++   .++.|++||+.++
T Consensus       192 ~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          192 VIDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             EEEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             EEEEEecCC---CccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            888876433   578899999999999888   6899999998766

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=1.4e-28  Score=284.51  Aligned_cols=267  Identities=13%  Similarity=0.227  Sum_probs=211.2

Q ss_pred             ceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          339 VTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       339 ~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      ....+.|.+.|++++|+|++..++|+|+.||.|+|||+.+......         ..........+.+|...|.+++|+|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~l~~~~  191 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE---------PSGECQPDLRLRGHQKEGYGLSWNP  191 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC---------TTCCCCCSEEEECCSSCCCCEEECT
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC---------ccccCCCcEEecCCCCCeEEEEeCC
Confidence            4566789999999999998655799999999999999976210000         0000001114679999999999999


Q ss_pred             CCC-eEEEEECCCeEEEEEccCCce----eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC---eee
Q 001311          419 DGS-LFGVAYSRHIVQIYSYHGGDE----VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG---AKQ  490 (1102)
Q Consensus       419 dg~-~las~~~d~~v~vwd~~~~~~----~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~---~~~  490 (1102)
                      ++. +|++|+.||.|++||+.++..    +.....+.+|...|.+++|+|++.. ++++++.|+.|++||++++   +.+
T Consensus       192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~  270 (430)
T 2xyi_A          192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS  270 (430)
T ss_dssp             TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred             CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence            998 999999999999999987432    2223457789999999999995444 7999999999999999987   577


Q ss_pred             EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEE
Q 001311          491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ  569 (1102)
Q Consensus       491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~  569 (1102)
                      ..+..|...|++++|++... .++++|+.||.|++||++.. .....+..|...|.+++|+|++.               
T Consensus       271 ~~~~~~~~~v~~i~~~p~~~-~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~---------------  334 (430)
T 2xyi_A          271 HTVDAHTAEVNCLSFNPYSE-FILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE---------------  334 (430)
T ss_dssp             EEEECCSSCEEEEEECSSCT-TEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT---------------
T ss_pred             eEeecCCCCeEEEEeCCCCC-CEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC---------------
Confidence            88889999999999965432 47999999999999999974 44556666666666666666654               


Q ss_pred             EcCCCCEEEEEeCCCeEEEEECCC--------------cceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEE
Q 001311          570 FDTTKNRFLAAGDDFSIKFWDMDS--------------VQLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILA  634 (1102)
Q Consensus       570 ~~~~~~~l~~~~~dg~i~iwd~~~--------------~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd  634 (1102)
                           .+|++++.|+.|++||+..              ...+..+.+|  ...|.+++|+|++. +|++++.||.|++|+
T Consensus       335 -----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          335 -----TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             -----TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             -----CEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                 4689999999999999986              2445555544  44799999999999 999999999999999


Q ss_pred             ccCC
Q 001311          635 TSDG  638 (1102)
Q Consensus       635 ~~~~  638 (1102)
                      +...
T Consensus       408 ~~~~  411 (430)
T 2xyi_A          408 MAEN  411 (430)
T ss_dssp             ECHH
T ss_pred             cccc
Confidence            8654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=8e-29  Score=306.76  Aligned_cols=253  Identities=17%  Similarity=0.210  Sum_probs=205.6

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCC--eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      ..+|.+.|++++|+|+|++ +++|+.||+|+|||+.++  +.+.                   .+.+|.+.|++++|+|+
T Consensus         5 l~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~~~-------------------~l~~h~~~V~~l~~s~~   64 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLID-------------------TLTGHEGPVWRVDWAHP   64 (753)
T ss_dssp             ---CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEEEE-------------------EECCCSSCEEEEEECCT
T ss_pred             cccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCccce-------------------eccCCcCceEEEEecCC
Confidence            4569999999999999996 999999999999999743  3333                   47899999999999998


Q ss_pred             --CCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCC--CCeeEEEEecCCCcEEEEeCCCCe--eeEEe
Q 001311          420 --GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHP--NKQLCVITCGDDKTIKVWDATNGA--KQYIF  493 (1102)
Q Consensus       420 --g~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d--~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~  493 (1102)
                        +++|++|+.||.|++||+.+++. .....+.+|...|++++|+|+  +.  ++++|+.||.|++||+.++.  ....+
T Consensus        65 ~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~  141 (753)
T 3jro_A           65 KFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIII  141 (753)
T ss_dssp             TSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEe
Confidence              99999999999999999999862 233457889999999999999  88  79999999999999999873  45677


Q ss_pred             ecCCCCeEEEeeeecC-----------CccEEEEEeCCCeEEEEEcCCCCCe----eeecCCCCeeeEEEEccCCceeee
Q 001311          494 EGHEAPVYSVCPHHKE-----------NIQFIFSTALDGKIKAWLYDNLGSR----VDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       494 ~~h~~~v~~v~~~~~~-----------~~~~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      .+|...|.+++|++..           ++.++++|+.||.|++||+++....    ..+..|...               
T Consensus       142 ~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~---------------  206 (753)
T 3jro_A          142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW---------------  206 (753)
T ss_dssp             ECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC---------------
T ss_pred             ecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc---------------
Confidence            8899999999997631           5689999999999999999876432    233344444               


Q ss_pred             ccccCceeEEEEcCC---CCEEEEEeCCCeEEEEECCCcceE---EEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311          559 GFRKRSLGVVQFDTT---KNRFLAAGDDFSIKFWDMDSVQLL---TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  632 (1102)
                            +.+++|+|+   ++++++++.||.|++||+.++...   .......+...|.+++|+|++++|++++.||.|++
T Consensus       207 ------V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~v  280 (753)
T 3jro_A          207 ------VRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL  280 (753)
T ss_dssp             ------EEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEEC
T ss_pred             ------EEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEE
Confidence                  455555555   568999999999999999886421   11222334557999999999999999999999999


Q ss_pred             EEccCC
Q 001311          633 LATSDG  638 (1102)
Q Consensus       633 wd~~~~  638 (1102)
                      |++.++
T Consensus       281 wd~~~~  286 (753)
T 3jro_A          281 WKENLE  286 (753)
T ss_dssp             CBCCSS
T ss_pred             EecCCC
Confidence            999865

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=2.8e-27  Score=250.30  Aligned_cols=294  Identities=14%  Similarity=0.128  Sum_probs=211.4

Q ss_pred             CEEEEEEc-CCCCeeEEEEecCCCcEEEEeCCCC---eeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311          455 GVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNG---AKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  530 (1102)
Q Consensus       455 ~V~~v~~s-~d~~~~~l~s~~~d~~i~vWd~~~~---~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~  530 (1102)
                      .+.++-|- +..+.+.+++++. ..|++|+..++   ++++++.+|+.+|..+.+.++.-+-..++-+            
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------  107 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------  107 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred             EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence            35666664 4455556777775 59999999999   8999999999999999987655432222222            


Q ss_pred             CCCeeeecCCCCeeeEEEEccC----CceeeeccccCceeEEEEcCCCCEEEEEe--CCCeEEEEEC-CCcceEEEEcCC
Q 001311          531 LGSRVDYEAPGRWCTTMAYSAD----GTRTYQGFRKRSLGVVQFDTTKNRFLAAG--DDFSIKFWDM-DSVQLLTSIDAD  603 (1102)
Q Consensus       531 ~~~~~~~~~~~~~v~~~~~s~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~  603 (1102)
                             ..+...|.+++++|+    ++.+..+.+...+  ..+ ++++.+.+++  .|+.|++|++ .+++.+..+..+
T Consensus       108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v--~~l-~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~  177 (356)
T 2w18_A          108 -------NLEIREIRALFCSSDDESEKQVLLKSGNIKAV--LGL-TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM  177 (356)
T ss_dssp             -------SSSEEEEEEECC------CCEEEEEEEEEEEE--EEE-TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred             -------cccccceEEEEECCCccccccEEEeCCCeEEE--Eec-CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence                   122346788999999    7777766544334  344 5566555543  5999999999 558888887777


Q ss_pred             CCCCCcCeEEEcC---CCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311          604 GGLPASPRIRFNK---DGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  680 (1102)
Q Consensus       604 ~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1102)
                      ..  .+..++|++   ++.+|++++.|++|+|||+.++ +.++.+.+|..                              
T Consensus       178 ~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-k~l~tL~g~~~------------------------------  224 (356)
T 2w18_A          178 PP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-QLLKKMHIDDS------------------------------  224 (356)
T ss_dssp             CC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-CEEEEEECCC-------------------------------
T ss_pred             CC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCC-cEEEEEcCCCc------------------------------
Confidence            55  677889998   7899999999999999999998 56665543211                              


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311          681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  760 (1102)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d  760 (1102)
                                                                               +...+.+++|+|+|..+++++.+
T Consensus       225 ---------------------------------------------------------~v~~v~~vafSpdG~~lvs~s~~  247 (356)
T 2w18_A          225 ---------------------------------------------------------YQASVCHKAYSEMGLLFIVLSHP  247 (356)
T ss_dssp             -----------------------------------------------------------CCCEEEEEEETTEEEEEEC--
T ss_pred             ---------------------------------------------------------ceeeeEEEEECCCCCEEEEeccC
Confidence                                                                     22357788999999887776643


Q ss_pred             ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCce
Q 001311          761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKT  839 (1102)
Q Consensus       761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~  839 (1102)
                      ..  +|                                                     .+++|+ |++|++||..+++.
T Consensus       248 ~~--~w-----------------------------------------------------~laSGs~D~tIklWd~~tgk~  272 (356)
T 2w18_A          248 CA--KE-----------------------------------------------------SESLRSPVFQLIVINPKTTLS  272 (356)
T ss_dssp             -----------------------------------------------------------------CCEEEEEEETTTTEE
T ss_pred             CC--cc-----------------------------------------------------eeeccCCCcEEEEEECCCCEE
Confidence            11  12                                                     356777 89999999999988


Q ss_pred             eeee-----cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccce-eEEEecCCCEEEEEcCCCc
Q 001311          840 MATF-----MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALNVLVSSGADSQ  913 (1102)
Q Consensus       840 ~~~~-----~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~  913 (1102)
                      +..+     .+|...+.+..+   ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|+|||++|++|+.|++
T Consensus       273 l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~T  349 (356)
T 2w18_A          273 VGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN  349 (356)
T ss_dssp             EEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSC
T ss_pred             EEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCc
Confidence            7665     466666444333   467999999999999999999999999999988766 5899999999999999999


Q ss_pred             EEEEEc
Q 001311          914 LCVWSS  919 (1102)
Q Consensus       914 i~vwd~  919 (1102)
                      |+|||+
T Consensus       350 IklWd~  355 (356)
T 2w18_A          350 IFVYHY  355 (356)
T ss_dssp             EEEEEE
T ss_pred             EEEecC
Confidence            999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.7e-27  Score=277.48  Aligned_cols=262  Identities=15%  Similarity=0.053  Sum_probs=199.6

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCe---eEEeeeeeee---ccCC--------------------------
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE---RLVLRNFKVW---DLGA--------------------------  394 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~---~~~~~~~~~~---~~~~--------------------------  394 (1102)
                      .++.+++|+|||++ |+++ .++.|++||+.+++   .+.......-   ....                          
T Consensus         5 ~p~~~v~~s~dg~~-l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            5 HPLQNLLTSRDGSL-VFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             CCCCEEEECSSSSE-EEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             ccEEEEEecCCCCE-EEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            57899999999994 5554 46899999999998   4433211000   0000                          


Q ss_pred             ------CCccccccccCCCCCCeEEEEEccCCCeE-EEEECCCeEEEEEcc--CCceeeeEEEeeccccCEEEEEEcCCC
Q 001311          395 ------CSMPLQAALVKDPGVSVNRVIWSPDGSLF-GVAYSRHIVQIYSYH--GGDEVRQHLEIDAHVGGVNDIAFSHPN  465 (1102)
Q Consensus       395 ------~~~~~~~~~~~~h~~~V~~l~~spdg~~l-as~~~d~~v~vwd~~--~~~~~~~~~~l~~h~~~V~~v~~s~d~  465 (1102)
                            ...........+|.+.|.+++|+|+|++| |+|+.||.|+|||+.  +++.+..+. ...|...|.+++|+|++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~~sp~~  161 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAISIAEDD  161 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEEECTTS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEEEcCCC
Confidence                  00000111234677899999999999996 889999999999999  777665322 23677899999999999


Q ss_pred             CeeEEEEecCCCcEEEEeCCCCeeeE----EeecCCCCeEEEeeeec-CCccEEEEEeCCCeEEEEEcCCCCCeee-ecC
Q 001311          466 KQLCVITCGDDKTIKVWDATNGAKQY----IFEGHEAPVYSVCPHHK-ENIQFIFSTALDGKIKAWLYDNLGSRVD-YEA  539 (1102)
Q Consensus       466 ~~~~l~s~~~d~~i~vWd~~~~~~~~----~~~~h~~~v~~v~~~~~-~~~~~l~s~s~dg~i~~wd~~~~~~~~~-~~~  539 (1102)
                      +  +|++|+.|+.|++|++.+++...    .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.++..... +..
T Consensus       162 ~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          162 T--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             S--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC
T ss_pred             C--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC
Confidence            9  79999999999999999887554    78899999999999765 2257999999999999999998776655 335


Q ss_pred             CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC----------------
Q 001311          540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----------------  603 (1102)
Q Consensus       540 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------  603 (1102)
                      |...|.+++|+                      ++++|++++.|+.|++||+.+++++..+..+                
T Consensus       240 h~~~v~~~~~s----------------------d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (450)
T 2vdu_B          240 HKHFVSSICCG----------------------KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPR  297 (450)
T ss_dssp             CSSCEEEEEEC----------------------STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC---
T ss_pred             CCCceEEEEEC----------------------CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccc
Confidence            55555555554                      4468999999999999999999988887632                


Q ss_pred             -------CCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEc
Q 001311          604 -------GGLPASPRIRFNKDGCLLAVST-NDNGIKILAT  635 (1102)
Q Consensus       604 -------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~  635 (1102)
                             .....+.+++|+|++++|++++ .++.|++|++
T Consensus       298 ~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          298 FQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             -------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             ccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence                   1123578999999999999999 8999999998

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=9.2e-27  Score=266.24  Aligned_cols=329  Identities=8%  Similarity=0.094  Sum_probs=241.8

Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      .++++++.|+.|++||+.+++.+.   .+.+| ..+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+. .+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~---~~~~~-~~~~~~~~s~dg~~-l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTA---TIPVG-SNPMGAVISPDGTK-VYVANAHSNDVSIIDTATNNVIATVPAGS-SP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEE---EEECS-SSEEEEEECTTSSE-EEEEEGGGTEEEEEETTTTEEEEEEECSS-SE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEE---EeecC-CCcceEEECCCCCE-EEEECCCCCeEEEEECCCCeEEEEEECCC-Cc
Confidence            467888999999999999987665   35555 45899999999994 45788899999999999999999988665 89


Q ss_pred             EEEeeeecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE-E
Q 001311          501 YSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF-L  578 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l-~  578 (1102)
                      .+++|+  +++++| ++++.|+.|++||+.+++....+..+ .                     .+..++|+|+++.+ +
T Consensus        77 ~~~~~s--pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~---------------------~~~~~~~s~dg~~l~~  132 (391)
T 1l0q_A           77 QGVAVS--PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-K---------------------SPLGLALSPDGKKLYV  132 (391)
T ss_dssp             EEEEEC--TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-S---------------------SEEEEEECTTSSEEEE
T ss_pred             cceEEC--CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-C---------------------CcceEEECCCCCEEEE
Confidence            999985  455666 55667899999999876554443322 2                     33455556666666 6


Q ss_pred             EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311          579 AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  657 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  657 (1102)
                      +++.++.|++||+.+++.+..+..+.   .+.+++|+|++++| ++++.++.|++||+.++ +....+.           
T Consensus       133 ~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~-~~~~~~~-----------  197 (391)
T 1l0q_A          133 TNNGDKTVSVINTVTKAVINTVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-SVIDTVK-----------  197 (391)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEE-----------
T ss_pred             EeCCCCEEEEEECCCCcEEEEEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCC-eEEEEEe-----------
Confidence            77789999999999999888887653   36889999999988 56677899999998665 1111100           


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311          658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  737 (1102)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  737 (1102)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (391)
T 1l0q_A          198 --------------------------------------------------------------------------------  197 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                                                                                         +...+.+++|+|+
T Consensus       198 -------------------------------------------------------------------~~~~~~~~~~~~~  210 (391)
T 1l0q_A          198 -------------------------------------------------------------------VEAAPSGIAVNPE  210 (391)
T ss_dssp             -------------------------------------------------------------------CSSEEEEEEECTT
T ss_pred             -------------------------------------------------------------------cCCCccceEECCC
Confidence                                                                               1223455666777


Q ss_pred             CCeEEEEe----CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeeeecccccc
Q 001311          818 DSYVMSAS----GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLKGHSKR  892 (1102)
Q Consensus       818 ~~~las~s----dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~~h~~~  892 (1102)
                      ++++++++    ++.|++||+.+++.+..+..|. .+.+++|+| ++++| ++++.|+.|++||+.+++++..+..|..+
T Consensus       211 g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~  288 (391)
T 1l0q_A          211 GTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP  288 (391)
T ss_dssp             SSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred             CCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence            76666654    5789999998888888887655 489999999 77766 67788999999999999988888766544


Q ss_pred             ce---eEE------------EecCC----------CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311          893 IT---GLA------------FSHAL----------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  947 (1102)
Q Consensus       893 V~---~l~------------~s~d~----------~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  947 (1102)
                      ..   .+.            |+.+.          ..+...+.|.++++|++..+...      ..        ......
T Consensus       289 ~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~------~~--------~~~~~~  354 (391)
T 1l0q_A          289 YASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSS------KK--------QNPTHT  354 (391)
T ss_dssp             ECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEE------CS--------SSCEEC
T ss_pred             CccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCccc------Cc--------CCCeEE
Confidence            21   122            33221          34666677889999999775421      11        123467


Q ss_pred             EccCCcEEEE
Q 001311          948 FHQDQIHFLV  957 (1102)
Q Consensus       948 ~spdg~~l~~  957 (1102)
                      |+++|.|.+.
T Consensus       355 ~~~~g~y~~~  364 (391)
T 1l0q_A          355 YSETGIYTVR  364 (391)
T ss_dssp             CSSCEEEEEE
T ss_pred             eCCCceEEEE
Confidence            9999999875

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.6e-28  Score=279.93  Aligned_cols=267  Identities=10%  Similarity=-0.028  Sum_probs=187.0

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc-----
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-----  418 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-----  418 (1102)
                      .|...+....+++++. ++|+|+.|++|+|||+.+++......+              ..+.+|.+.|.+++|+|     
T Consensus        87 ~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~~--------------~~~~gH~~~v~~v~~~p~~~~~  151 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHVL--------------GGKSGHHNFVNDIDIADVYSAD  151 (393)
T ss_dssp             ----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEEE--------------CTTTSCSSCEEEEEEEEEECTT
T ss_pred             ccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeeee--------------cccCCCCCceEEEEEccccccc
Confidence            4555566666667776 599999999999999998876543222              25789999999999998     


Q ss_pred             ---CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE---
Q 001311          419 ---DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI---  492 (1102)
Q Consensus       419 ---dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~---  492 (1102)
                         ||++||+|+.|++|+|||+.++..+.   .+.+|...|.+++|+|++.. +|++|+.|++|++||+.+++....   
T Consensus       152 ~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~  227 (393)
T 4gq1_A          152 NRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQ  227 (393)
T ss_dssp             CSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-------
T ss_pred             cCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccccc
Confidence               89999999999999999999876554   46678999999999999865 799999999999999998765432   


Q ss_pred             ----------------------eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEc
Q 001311          493 ----------------------FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS  550 (1102)
Q Consensus       493 ----------------------~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s  550 (1102)
                                            ..+|...|.++.|+ .+++..|++++.|+++++||+........+..+...+..+.+.
T Consensus       228 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~  306 (393)
T 4gq1_A          228 TELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLL  306 (393)
T ss_dssp             ---CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCS
T ss_pred             cCCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEc
Confidence                                  23677888888875 4677899999999999999999888777777777778888888


Q ss_pred             cCCceeeeccccCceeEEEEcCCCC-EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001311          551 ADGTRTYQGFRKRSLGVVQFDTTKN-RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  629 (1102)
Q Consensus       551 ~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  629 (1102)
                      ++++....  ....+.++.+.+.+. ++++|+.||.|++||+.+++....+..+..  .|.+++|+|||++|++++.+| 
T Consensus       307 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-  381 (393)
T 4gq1_A          307 PNVQGISL--FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-  381 (393)
T ss_dssp             CSEEEECS--SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-
T ss_pred             cccccccc--cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-
Confidence            77643221  122233333444444 556677899999999999988877765544  799999999999999998765 


Q ss_pred             EEEEEc
Q 001311          630 IKILAT  635 (1102)
Q Consensus       630 i~iwd~  635 (1102)
                      +.+|.+
T Consensus       382 v~lvrL  387 (393)
T 4gq1_A          382 VLLTRL  387 (393)
T ss_dssp             EEEEEE
T ss_pred             eEEEEE
Confidence            556654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3e-27  Score=275.30  Aligned_cols=248  Identities=9%  Similarity=0.037  Sum_probs=202.7

Q ss_pred             CCCCCeeEEEEecCCCeE-EEEe-CCeEEEEEcC--CCceeeeec--CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          804 NPEEAVPCFALSKNDSYV-MSAS-GGKISLFNMM--TFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~l-as~s-dg~I~iwd~~--~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                      +|...|.+++|+|++++| ++++ ||.|++||+.  +++.+..+.  .|...|++++|+| ++++|++|+.||.|++|++
T Consensus       100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~v~~~~~  178 (450)
T 2vdu_B          100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGDVYSIDI  178 (450)
T ss_dssp             CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSEEEEEET
T ss_pred             ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC-CCCEEEEEeCCCcEEEEec
Confidence            366789999999999996 7887 8999999999  888888876  5678899999999 8999999999999999999


Q ss_pred             ecceeee----eeccccccceeEEEecC---CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311          878 RVDEVKS----KLKGHSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       878 ~~~~~~~----~l~~h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      .+++...    .+.+|...|++++|+|+   +++|++++.|++|++||+.+++..    .....+|.   ..|.+++|+ 
T Consensus       179 ~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~----~~~~~~h~---~~v~~~~~s-  250 (450)
T 2vdu_B          179 NSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV----DKWLFGHK---HFVSSICCG-  250 (450)
T ss_dssp             TSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE----EEECCCCS---SCEEEEEEC-
T ss_pred             CCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee----eeeecCCC---CceEEEEEC-
Confidence            8876554    78899999999999999   999999999999999999886542    22234554   489999999 


Q ss_pred             CCcEEEEE-eCCeEEEEEcCCceEeeeeccC-----------------------CCCCCeeEEEEcCCCcEEEEEe-CCC
Q 001311          951 DQIHFLVV-HETQLAIFETTKLECVKQWVPR-----------------------ESSAPITHATFSCDSQLVYACF-LDA 1005 (1102)
Q Consensus       951 dg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~-----------------------~h~~~v~~l~~spd~~~l~s~s-~Dg 1005 (1102)
                      ++++|+++ .|+.|++||+.+++++..+...                       .+...|.+++|+|++++|++++ .|+
T Consensus       251 d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~  330 (450)
T 2vdu_B          251 KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATK  330 (450)
T ss_dssp             STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCS
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCC
Confidence            99999994 8999999999999988776521                       2246799999999999999999 899


Q ss_pred             eEEEEEc--CCc---eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec-------CCcEEEEeccCCCcccc
Q 001311         1006 TVCVFSA--ANL---KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-------DGGVHVFEPLESEGKWG 1073 (1102)
Q Consensus      1006 ~I~vwd~--~~~---~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~-------Dg~v~vW~~~~~~~~~~ 1073 (1102)
                      .|+||++  .++   +.+..+.       +|  ..+.  +++|+| + .++++.+.       ++.|.+|.+....+.|.
T Consensus       331 ~i~iw~~~~~~~~~l~~~~~~~-------~~--~~v~--~~~~~~-~-~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~  397 (450)
T 2vdu_B          331 CIIILEMSEKQKGDLALKQIIT-------FP--YNVI--SLSAHN-D-EFQVTLDNKESSGVQKNFAKFIEYNLNENSFV  397 (450)
T ss_dssp             EEEEEEECSSSTTCEEEEEEEE-------CS--SCEE--EEEEET-T-EEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred             eEEEEEeccCCCCceeeccEec-------cC--CceE--EEEecC-C-cEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence            9999999  665   5565555       22  1244  899999 4 45555433       56689999877655553

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=3.1e-27  Score=265.11  Aligned_cols=297  Identities=15%  Similarity=0.200  Sum_probs=209.2

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      ..+|...|.+++|||||++||+|+.|+ ++|||+.+++....     .+...+..++|.++++. ++++++.|++|++||
T Consensus        15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS-----QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD   87 (355)
T ss_dssp             ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE-----EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred             cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee-----eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence            578999999999999999999998775 78999987654431     22335888999998884 446788889999999


Q ss_pred             CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      +.+++++..+. |...|.+++++  ++  .++.+ .|+.|++||+.+. +.+..+..   ..                  
T Consensus        88 ~~~~~~~~~~~-~~~~v~~v~~~--~~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~------------------  140 (355)
T 3vu4_A           88 DVKKQDVSRIK-VDAPVKDLFLS--RE--FIVVS-YGDVISVFKFGNPWKRITDDIR---FG------------------  140 (355)
T ss_dssp             TTTTEEEEEEE-CSSCEEEEEEC--SS--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EE------------------
T ss_pred             CCCCcEEEEEE-CCCceEEEEEc--CC--EEEEE-EcCEEEEEECCCCceeeEEecc---CC------------------
Confidence            99999999987 67789999874  33  34444 4789999999876 44433322   11                  


Q ss_pred             CceeEEEEcCCCCEEEE--EeCCCeEEEEECCCcc----------------eEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311          563 RSLGVVQFDTTKNRFLA--AGDDFSIKFWDMDSVQ----------------LLTSIDADGGLPASPRIRFNKDGCLLAVS  624 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  624 (1102)
                         ..+++++  .+++.  ++.||.|++||+.++.                .+..+.+|  ...|.+++|+|+|++|+++
T Consensus       141 ---~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~  213 (355)
T 3vu4_A          141 ---GVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATC  213 (355)
T ss_dssp             ---EEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEE
T ss_pred             ---ceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEE
Confidence               1233333  34555  5789999999999865                25666655  4489999999999999999


Q ss_pred             ECCCc-EEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCC
Q 001311          625 TNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVK  703 (1102)
Q Consensus       625 ~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  703 (1102)
                      +.||+ |++||+.++ +.+..+.                                                         
T Consensus       214 s~d~~~v~iwd~~~~-~~~~~~~---------------------------------------------------------  235 (355)
T 3vu4_A          214 SQDGTIIRVFKTEDG-VLVREFR---------------------------------------------------------  235 (355)
T ss_dssp             ETTCSEEEEEETTTC-CEEEEEE---------------------------------------------------------
T ss_pred             eCCCCEEEEEECCCC-cEEEEEE---------------------------------------------------------
Confidence            99998 999999887 3333332                                                         


Q ss_pred             ccccccCCCccceEecccCCCCCccccccCCCcc-cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccc-
Q 001311          704 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENL-RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATA-  781 (1102)
Q Consensus       704 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-  781 (1102)
                                                      .+ |...|.+++|+|+|++|++++.|+.|++|++............. 
T Consensus       236 --------------------------------~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~  283 (355)
T 3vu4_A          236 --------------------------------RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW  283 (355)
T ss_dssp             --------------------------------CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred             --------------------------------cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence                                            01 66789999999999999999999999999986543211110000 


Q ss_pred             ---cccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCC
Q 001311          782 ---SVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTF  837 (1102)
Q Consensus       782 ---~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~  837 (1102)
                         ......|....-.     +. .........++|++|+++|++++ ||.+++|++..+
T Consensus       284 ~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          284 INMKYFQSEWSLCNFK-----LS-VDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EECCCCCCSSCSEEEE-----CC-CCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             eeccccccccceeEEE-----ec-cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence               0000111111000     10 01233457799999999999998 999999998653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=4.8e-27  Score=272.71  Aligned_cols=296  Identities=13%  Similarity=0.107  Sum_probs=227.7

Q ss_pred             CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEE--EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311          409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL--EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  486 (1102)
Q Consensus       409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~--~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~  486 (1102)
                      ..+.+++|+|++.++++++.|+.|++||+.+++......  .+.+|.+.|.+++|++++.  ++++++.|+.|++||+.+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence            456699999988888888889999999999988654221  2458899999999999998  899999999999999999


Q ss_pred             CeeeEEeecCCCCeEEEeeeecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311          487 GAKQYIFEGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  565 (1102)
Q Consensus       487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  565 (1102)
                      ++.+..+..|...+.+++|++  ++.++ ++++.|+.|++||+++++....+..+ ..                     +
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~---------------------~  256 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GL---------------------P  256 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SE---------------------E
T ss_pred             ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CC---------------------c
Confidence            999999999999999999864  44566 56668999999999876554443322 22                     4


Q ss_pred             eEEEEcCCCCEEEEEe--------CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEE-EEEECCCcEEEEEcc
Q 001311          566 GVVQFDTTKNRFLAAG--------DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLL-AVSTNDNGIKILATS  636 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~  636 (1102)
                      ..++++|+++++++++        .|+.|++||+.+++.+..+....   .+.+++|+|+++.+ ++++.++.|++||+.
T Consensus       257 ~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~  333 (433)
T 3bws_A          257 RGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPG---NKRHIVSGNTENKIYVSDMCCSKIEVYDLK  333 (433)
T ss_dssp             EEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEE---CEEEEEECSSTTEEEEEETTTTEEEEEETT
T ss_pred             eEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCC---CcceEEECCCCCEEEEEecCCCEEEEEECC
Confidence            4455555556777776        58899999999998877764322   47889999999755 556889999999987


Q ss_pred             CCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccce
Q 001311          637 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  716 (1102)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~  716 (1102)
                      ++ +....+.                                                                      
T Consensus       334 ~~-~~~~~~~----------------------------------------------------------------------  342 (433)
T 3bws_A          334 EK-KVQKSIP----------------------------------------------------------------------  342 (433)
T ss_dssp             TT-EEEEEEE----------------------------------------------------------------------
T ss_pred             CC-cEEEEec----------------------------------------------------------------------
Confidence            66 2222111                                                                      


Q ss_pred             EecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccc
Q 001311          717 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  796 (1102)
Q Consensus       717 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  796 (1102)
                                           +...+.+++|+|+|+.+++++.+..                                  
T Consensus       343 ---------------------~~~~~~~~~~s~dg~~l~~~~~~~~----------------------------------  367 (433)
T 3bws_A          343 ---------------------VFDKPNTIALSPDGKYLYVSCRGPN----------------------------------  367 (433)
T ss_dssp             ---------------------CSSSEEEEEECTTSSEEEEEECCCC----------------------------------
T ss_pred             ---------------------CCCCCCeEEEcCCCCEEEEEecCCC----------------------------------
Confidence                                 2345778999999988877765411                                  


Q ss_pred             ccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC-CCcEEE
Q 001311          797 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DSSIQI  874 (1102)
Q Consensus       797 ~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~v  874 (1102)
                              .          .+..++++++ ||.|++||+.+++.+..+.. ...+.+++|+| ++++|++++. |+.|++
T Consensus       368 --------~----------~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~d~~i~v  427 (433)
T 3bws_A          368 --------H----------PTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSP-DNRYLVISDFLDHQIRV  427 (433)
T ss_dssp             --------C----------TTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECT-TSCEEEEEETTTTEEEE
T ss_pred             --------c----------cccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcC-CCCEEEEEECCCCeEEE
Confidence                    0          0223455666 89999999999998888876 45799999999 8888888775 999999


Q ss_pred             EEeec
Q 001311          875 YNVRV  879 (1102)
Q Consensus       875 wd~~~  879 (1102)
                      |++..
T Consensus       428 ~~~~~  432 (433)
T 3bws_A          428 YRRDG  432 (433)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            99863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=6.4e-28  Score=274.88  Aligned_cols=291  Identities=13%  Similarity=0.077  Sum_probs=186.7

Q ss_pred             cCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceee--eEEEeeccccCEEEEEEcC--------CCCeeEEEEe
Q 001311          404 VKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSH--------PNKQLCVITC  473 (1102)
Q Consensus       404 ~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~--------d~~~~~l~s~  473 (1102)
                      ...|...+....+++++.+||+|+.|++|+|||..+++...  ....+.+|.+.|++|+|+|        |++  +|+||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~  162 (393)
T 4gq1_A           85 ENLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASV  162 (393)
T ss_dssp             CC----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEE
T ss_pred             ccccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEE
Confidence            34566666667777889999999999999999999987543  2334789999999999998        777  89999


Q ss_pred             cCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311          474 GDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  553 (1102)
Q Consensus       474 ~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  553 (1102)
                      +.|++|+|||+.++.++..+.+|...|.+++|++.. ..+|++++.||+|++||+.++........+.......      
T Consensus       163 s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~------  235 (393)
T 4gq1_A          163 GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPW------  235 (393)
T ss_dssp             ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCC------
T ss_pred             ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccce------
Confidence            999999999999999988888899999999997532 3589999999999999998866544332221111000      


Q ss_pred             ceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc-CCCCEEEEEECCCcEEE
Q 001311          554 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       554 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i  632 (1102)
                                             ..+......           .......++...+.++.|+ ++++.|++++.|+++++
T Consensus       236 -----------------------~~s~~~~~~-----------~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~v  281 (393)
T 4gq1_A          236 -----------------------LLTLNTLPL-----------VNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLR  281 (393)
T ss_dssp             -----------------------SEEEESGGG-----------C------CCSSSCSEEEEETTTTCEEEEECTTSEEEE
T ss_pred             -----------------------EEecccccc-----------eeeeecccccccceeeeeecCCCCEEEEEeCCCCEEE
Confidence                                   011111100           0111112234468889987 79999999999999999


Q ss_pred             EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311          633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  712 (1102)
Q Consensus       633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  712 (1102)
                      ||+..+ .....+..                                                                 
T Consensus       282 wd~~~~-~~~~~l~~-----------------------------------------------------------------  295 (393)
T 4gq1_A          282 WNLFAN-NDYNEISD-----------------------------------------------------------------  295 (393)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EECccC-CCCceEee-----------------------------------------------------------------
Confidence            998776 22222211                                                                 


Q ss_pred             ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCC
Q 001311          713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPS  792 (1102)
Q Consensus       713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~  792 (1102)
                                               +...+..+.+.++++.+..                                    
T Consensus       296 -------------------------~~~~~~~~~~~~~~~~~~~------------------------------------  314 (393)
T 4gq1_A          296 -------------------------STMKLGPKNLLPNVQGISL------------------------------------  314 (393)
T ss_dssp             ---------------------------------CCSCSEEEECS------------------------------------
T ss_pred             -------------------------ecCccccEEEccccccccc------------------------------------
Confidence                                     2222233333333321110                                    


Q ss_pred             ccccccccCCCCCCCCeeEEEEec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC
Q 001311          793 GIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS  870 (1102)
Q Consensus       793 ~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg  870 (1102)
                                  +...+..+.+.+ ++.++++|+ ||.|++||+.+++....+.+|...|.+++|+| ||++||+++++|
T Consensus       315 ------------~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG~~LA~as~~G  381 (393)
T 4gq1_A          315 ------------FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DGSHLAIATEGS  381 (393)
T ss_dssp             ------------SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TSSEEEEEESSE
T ss_pred             ------------cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CCCEEEEEeCCC
Confidence                        111122222223 444666777 89999999999999888888999999999999 999999998766


Q ss_pred             cEEEEEee
Q 001311          871 SIQIYNVR  878 (1102)
Q Consensus       871 ~v~vwd~~  878 (1102)
                       +.+|.+.
T Consensus       382 -v~lvrL~  388 (393)
T 4gq1_A          382 -VLLTRLM  388 (393)
T ss_dssp             -EEEEEEG
T ss_pred             -eEEEEEe
Confidence             6666554

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=6.6e-27  Score=262.47  Aligned_cols=252  Identities=12%  Similarity=0.119  Sum_probs=178.3

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      ..|.+.|++++|||||++ |++|+.|+ ++|||+.+++....                     .+...+..+++++++++
T Consensus        16 ~~h~~~V~~v~fs~dg~~-la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~   72 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSC-LILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNY   72 (355)
T ss_dssp             ---CCCCCEEEECTTSSE-EEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSE
T ss_pred             ccCCCceEEEEECCCCCE-EEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCE
Confidence            458999999999999995 88888765 78999988766542                     11125888999999998


Q ss_pred             EE-EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC-eeeEEeecCCCCe
Q 001311          423 FG-VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-AKQYIFEGHEAPV  500 (1102)
Q Consensus       423 la-s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~-~~~~~~~~h~~~v  500 (1102)
                      ++ +++.|++|+|||+.+++.+..   +. |...|.+++|+++.    ++.+ .|+.|++||+.++ +.+..+..   +.
T Consensus        73 ~~~~~~~d~~v~iWd~~~~~~~~~---~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~  140 (355)
T 3vu4_A           73 VAFVTGVKEVVHIWDDVKKQDVSR---IK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDIR---FG  140 (355)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEE---EE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCEE---EE
T ss_pred             EEEEECCccEEEEEECCCCcEEEE---EE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEecc---CC
Confidence            85 577789999999999987653   43 67799999998764    3333 3789999999998 77766664   33


Q ss_pred             EEEeeeecCCccEEEE--EeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          501 YSVCPHHKENIQFIFS--TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s--~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      ..+++++    .+++.  |+.||.|++||+.+...........   ....+.|. ...+.+| ...+.+++|+|++++|+
T Consensus       141 ~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~---~~~~~~p~-~~~~~~h-~~~v~~~~~s~~g~~l~  211 (355)
T 3vu4_A          141 GVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGV---QQKAILGK-GVLIKAH-TNPIKMVRLNRKSDMVA  211 (355)
T ss_dssp             EEEEEET----TEEEEEESSCTTCEEEEECCC---------------------C-CEEECCC-SSCEEEEEECTTSSEEE
T ss_pred             ceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccc---cccccCcc-cEEEEcc-CCceEEEEECCCCCEEE
Confidence            3344433    34555  6889999999998754211000000   00000000 0222222 23566666677777899


Q ss_pred             EEeCCCe-EEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          579 AAGDDFS-IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       579 ~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +++.|++ |++||+.+++++..+....+...|.+++|+|++++|++++.|++|++||+..+
T Consensus       212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            9999998 99999999999999873113457999999999999999999999999999765

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.6e-27  Score=265.02  Aligned_cols=280  Identities=8%  Similarity=0.051  Sum_probs=214.8

Q ss_pred             EEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecC
Q 001311          460 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEA  539 (1102)
Q Consensus       460 ~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~  539 (1102)
                      .+.+++.  ++++|+.||+|++||+.+++.+..+.  ...|.++.+++.     +++++.|++|++|+..          
T Consensus        43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~----------  103 (343)
T 3lrv_A           43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPG----------  103 (343)
T ss_dssp             SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETT----------
T ss_pred             hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEcc----------
Confidence            4456677  79999999999999999999988886  456777776543     9999999999999764          


Q ss_pred             CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC--C
Q 001311          540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK--D  617 (1102)
Q Consensus       540 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~--~  617 (1102)
                                                                  +.+.+||+.+++.+..+.. .+...|.+++|+|  +
T Consensus       104 --------------------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~  138 (343)
T 3lrv_A          104 --------------------------------------------NQITILDSKTNKVLREIEV-DSANEIIYMYGHNEVN  138 (343)
T ss_dssp             --------------------------------------------TEEEEEETTTCCEEEEEEC-CCSSCEEEEECCC---
T ss_pred             --------------------------------------------CceEEeecCCcceeEEeec-CCCCCEEEEEcCCCCC
Confidence                                                        2567899988887766652 2234799999999  9


Q ss_pred             CCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCcc
Q 001311          618 GCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVR  697 (1102)
Q Consensus       618 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  697 (1102)
                      ++++++++.||.|++||+.++. ......                                                   
T Consensus       139 ~~~l~s~s~dg~i~~wd~~~~~-~~~~~~---------------------------------------------------  166 (343)
T 3lrv_A          139 TEYFIWADNRGTIGFQSYEDDS-QYIVHS---------------------------------------------------  166 (343)
T ss_dssp             CCEEEEEETTCCEEEEESSSSC-EEEEEC---------------------------------------------------
T ss_pred             CCEEEEEeCCCcEEEEECCCCc-EEEEEe---------------------------------------------------
Confidence            9999999999999999998772 222111                                                   


Q ss_pred             ccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCC
Q 001311          698 SLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSG  777 (1102)
Q Consensus       698 ~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  777 (1102)
                                                            ..+...|.+++|+|+|.++++++.|+.|++||+..       
T Consensus       167 --------------------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-------  201 (343)
T 3lrv_A          167 --------------------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-------  201 (343)
T ss_dssp             --------------------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-------
T ss_pred             --------------------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-------
Confidence                                                  01344688999999999999999999999998743       


Q ss_pred             cccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecC---CCCCee--E
Q 001311          778 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP---PPPAAT--F  852 (1102)
Q Consensus       778 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~---~~~~i~--~  852 (1102)
                                     +......+. .+|...|.+++|+|++.+|++++++.|++||+++++.+..+..   |...+.  +
T Consensus       202 ---------------~~~~~~~~~-~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  265 (343)
T 3lrv_A          202 ---------------PDQASSRFP-VDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVT  265 (343)
T ss_dssp             ---------------TTSCCEECC-CCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEE
T ss_pred             ---------------CCCCccEEe-ccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceE
Confidence                           222201111 1388999999999999999999977999999999887766554   334444  6


Q ss_pred             EEEecCCCcEEEEEeC-CCcEEEEEeecceeeeeeccccccceeEEEec---CCCEEEEEcCCCcEEEEEcCC
Q 001311          853 LAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH---ALNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       853 l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                      ++|+| ++++|++++. |+.|+||++.+.......    .++..++|++   +.+.|++++.|+.+.++-...
T Consensus       266 ~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  333 (343)
T 3lrv_A          266 YDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN  333 (343)
T ss_dssp             EEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred             EEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence            99999 9999999998 999999999765432222    5677888988   889999999999999886443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.9e-27  Score=266.02  Aligned_cols=198  Identities=12%  Similarity=0.074  Sum_probs=158.0

Q ss_pred             CCCCeeEEEEec--CCCeEEEEe-CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          805 PEEAVPCFALSK--NDSYVMSAS-GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       805 ~~~~i~~l~~s~--d~~~las~s-dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                      |...|.+++|+|  +++++++++ ||+|++||+.+++....... |...|++++|+| ++.+|++|+.||.|++||+.++
T Consensus       124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~  202 (343)
T 3lrv_A          124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSP  202 (343)
T ss_dssp             CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCT
T ss_pred             CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCC
Confidence            667899999999  999999999 99999999999998776644 455899999999 9999999999999999999999


Q ss_pred             eee-eeecc-ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCC--cEEEEccCCcEEE
Q 001311          881 EVK-SKLKG-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD--TRVQFHQDQIHFL  956 (1102)
Q Consensus       881 ~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~spdg~~l~  956 (1102)
                      +.+ ..+.+ |.+.|++++|+|++.+|++++ |++|++||+.+++...  .+.....+.   ..+  .+++|+|+|++|+
T Consensus       203 ~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          203 DQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPE---FKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             TSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEE
T ss_pred             CCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eeccccccc---ccccceEEEECCCCCEEE
Confidence            877 78888 999999999999999999999 4599999999865421  111111111   122  4699999999999


Q ss_pred             EE-e-CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC---CCcEEEEEeCCCeEEEEEcCCc
Q 001311          957 VV-H-ETQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       957 ~~-~-d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp---d~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      ++ . |+.+++|++.+.......      .++..++|++   +.+.+++++.||.++++-....
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  334 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIAAILKTND  334 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred             EecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceEEEEecCC
Confidence            94 4 999999999765432221      4677888998   9999999999999998865443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.3e-27  Score=293.67  Aligned_cols=251  Identities=12%  Similarity=0.077  Sum_probs=209.3

Q ss_pred             CCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcC--CCceeeeecCCCCCeeEEEEecCC--CcEEEEEeCCCcEEEEEee
Q 001311          804 NPEEAVPCFALSKNDSYVMSAS-GGKISLFNMM--TFKTMATFMPPPPAATFLAFHPQD--NNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~--~~~~~~~~~~~~~~i~~l~~sp~d--~~~lasg~~dg~v~vwd~~  878 (1102)
                      +|.+.|++++|+|++++|++|+ ||.|++||+.  ++.....+.+|...|++++|++ +  +++|++|+.||.|++||+.
T Consensus         7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~~~l~s~s~Dg~I~vwd~~   85 (753)
T 3jro_A            7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH-PKFGTILASCSYDGKVLIWKEE   85 (753)
T ss_dssp             -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECC-TTSCSEEEEEETTSCEEEEEEE
T ss_pred             cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecC-CCCCCEEEEEeCCCeEEEEECC
Confidence            3999999999999999999998 9999999998  5677888999999999999998 6  8999999999999999999


Q ss_pred             cce--eeeeeccccccceeEEEecC--CCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc----
Q 001311          879 VDE--VKSKLKGHSKRITGLAFSHA--LNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ----  950 (1102)
Q Consensus       879 ~~~--~~~~l~~h~~~V~~l~~s~d--~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp----  950 (1102)
                      +++  .+..+.+|...|++++|+|+  +++|++++.||+|++||+.++........   .+|.   ..|.+++|+|    
T Consensus        86 ~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~---~~~~---~~v~~l~~~p~~~~  159 (753)
T 3jro_A           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIII---DAHA---IGVNSASWAPATIE  159 (753)
T ss_dssp             TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEE---ECCS---SCEEEEEECCCC--
T ss_pred             CCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEe---ecCC---CceEEEEecCcccc
Confidence            986  77888899999999999999  99999999999999999988644332222   2333   4789999999    


Q ss_pred             ---------CCcEEEEE-eCCeEEEEEcCCc----eEeeeeccCCCCCCeeEEEEcCC---CcEEEEEeCCCeEEEEEcC
Q 001311          951 ---------DQIHFLVV-HETQLAIFETTKL----ECVKQWVPRESSAPITHATFSCD---SQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus       951 ---------dg~~l~~~-~d~~i~iwd~~~~----~~~~~~~~~~h~~~v~~l~~spd---~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
                               ++.+++++ .||.|++||+.++    .....+.  +|...|++++|+|+   +++|++++.||.|++||+.
T Consensus       160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~  237 (753)
T 3jro_A          160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD  237 (753)
T ss_dssp             -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEES
T ss_pred             cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeec--CCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCC
Confidence                     58888885 8999999999877    3444443  88999999999999   9999999999999999999


Q ss_pred             CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1014 NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1014 ~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      ++.........  ...+| ...+.  +++|+| ++.+|++|+.||.|++|++.++.
T Consensus       238 ~~~~~~~~~~~--~~~~~-~~~v~--~l~~sp-dg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          238 NEQGPWKKTLL--KEEKF-PDVLW--RASWSL-SGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             SSSSCCBCCBS--SSSCC-SSCCC--CEEECT-TTCCEEEECSSSCEECCBCCSSS
T ss_pred             CCCCcceeEEe--ccCCC-CCceE--EEEEcC-CCCEEEEEcCCCEEEEEecCCCC
Confidence            87532211111  11122 22355  899999 68999999999999999998654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=2.4e-26  Score=265.60  Aligned_cols=205  Identities=18%  Similarity=0.209  Sum_probs=154.1

Q ss_pred             CCeEEEEEccCC----------CeEEEEEC----CCeEEEEEcc----------------CC--------ceeeeEEEee
Q 001311          409 VSVNRVIWSPDG----------SLFGVAYS----RHIVQIYSYH----------------GG--------DEVRQHLEID  450 (1102)
Q Consensus       409 ~~V~~l~~spdg----------~~las~~~----d~~v~vwd~~----------------~~--------~~~~~~~~l~  450 (1102)
                      .+..++.|.|+.          .+|++|+.    ...|.++++.                ++        ..........
T Consensus        46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  125 (430)
T 2xyi_A           46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI  125 (430)
T ss_dssp             SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred             CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence            466788888865          46777754    3467777653                00        0001123456


Q ss_pred             ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC----------CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC
Q 001311          451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN----------GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD  520 (1102)
Q Consensus       451 ~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~----------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d  520 (1102)
                      +|.+.|++++|+|++.. +|++++.||.|++||+.+          ...+..+.+|...|.+++|++... .+|++|+.|
T Consensus       126 ~h~~~v~~l~~~p~~~~-~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~d  203 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNAC-VIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLN-GYLLSASDD  203 (430)
T ss_dssp             EESSCCSEEEEETTEEE-EEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTST-TEEEEECTT
T ss_pred             cCCCcEEEEEECCCCCc-EEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCC-CeEEEEeCC
Confidence            89999999999998443 799999999999999987          677889999999999999965432 299999999


Q ss_pred             CeEEEEEcCCCCC-------eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC-CCCEEEEEeCCCeEEEEECC
Q 001311          521 GKIKAWLYDNLGS-------RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGDDFSIKFWDMD  592 (1102)
Q Consensus       521 g~i~~wd~~~~~~-------~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~iwd~~  592 (1102)
                      |.|++||+.....       ...+..|..                     .+.+++|+| ++..|++++.||.|++||++
T Consensus       204 g~i~vwd~~~~~~~~~~~~~~~~~~~h~~---------------------~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~  262 (430)
T 2xyi_A          204 HTICLWDINATPKEHRVIDAKNIFTGHTA---------------------VVEDVAWHLLHESLFGSVADDQKLMIWDTR  262 (430)
T ss_dssp             SCEEEEETTSCCBGGGEEECSEEECCCSS---------------------CEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             CeEEEEeCCCCCCCCceeccceeecCCCC---------------------CEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            9999999987432       122333333                     455555555 44689999999999999999


Q ss_pred             Cc---ceEEEEcCCCCCCCcCeEEEcCCCC-EEEEEECCCcEEEEEccCC
Q 001311          593 SV---QLLTSIDADGGLPASPRIRFNKDGC-LLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       593 ~~---~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ++   +.+..+..+.  ..|++++|+|++. +|++|+.||.|++||+++.
T Consensus       263 ~~~~~~~~~~~~~~~--~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          263 NNNTSKPSHTVDAHT--AEVNCLSFNPYSEFILATGSADKTVALWDLRNL  310 (430)
T ss_dssp             CSCSSSCSEEEECCS--SCEEEEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             CCCCCcceeEeecCC--CCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence            87   5666776554  4799999999887 7889999999999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=2.4e-25  Score=262.65  Aligned_cols=333  Identities=13%  Similarity=0.137  Sum_probs=239.8

Q ss_pred             EecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccC-CCCCCeEEEEEccCCCeEEEEECCCeE
Q 001311          354 FHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK-DPGVSVNRVIWSPDGSLFGVAYSRHIV  432 (1102)
Q Consensus       354 ~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~spdg~~las~~~d~~v  432 (1102)
                      |+|++. ++++++.|++|.+||..+++.+..                   +. +|.  +.+++|||||++|++++.|++|
T Consensus       145 ~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~V  202 (543)
T 1nir_A          145 LDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDARI  202 (543)
T ss_dssp             CCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSEE
T ss_pred             cCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCeE
Confidence            788886 689999999999999999988764                   33 443  8999999999999999999999


Q ss_pred             EEEEc--cCCceeeeEEEeeccccCEEEEEEcC----CCCeeEEEEec-CCCcEEEEeCCCCeeeEEeecC---------
Q 001311          433 QIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG-DDKTIKVWDATNGAKQYIFEGH---------  496 (1102)
Q Consensus       433 ~vwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~~~l~s~~-~d~~i~vWd~~~~~~~~~~~~h---------  496 (1102)
                      .+||+  .+++.+.   ++. +...+..++|+|    ||+  ++++++ .+++|.|||..+++++.++..+         
T Consensus       203 ~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~  276 (543)
T 1nir_A          203 DMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY  276 (543)
T ss_dssp             EEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE
T ss_pred             EEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCcccc
Confidence            99999  7776554   344 445689999999    999  566665 5899999999999999888652         


Q ss_pred             -C-CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee--eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311          497 -E-APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV--DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  572 (1102)
Q Consensus       497 -~-~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  572 (1102)
                       . ..+.++.++++. ..++++...++.|.+||+.+.+.+.  .+. ...                     .+..+.|+|
T Consensus       277 ~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~---------------------~~~~~~~sp  333 (543)
T 1nir_A          277 HPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAP---------------------FLHDGGWDS  333 (543)
T ss_dssp             ESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCS---------------------SCCCEEECT
T ss_pred             ccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEec-cCc---------------------CccCceECC
Confidence             2 267788876533 3677888889999999998755432  111 122                     333455666


Q ss_pred             CCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEE-EcCC-CCEEEEEE-CCCcEEEEEccCCccceeecccc
Q 001311          573 TKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIR-FNKD-GCLLAVST-NDNGIKILATSDGIRLLRTFENL  648 (1102)
Q Consensus       573 ~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~-~s~~-~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~  648 (1102)
                      +++++++++ .+++|.+||..+++++..+........-..+. ++|+ +..++++. .|++|.+||+.+....       
T Consensus       334 dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~-------  406 (543)
T 1nir_A          334 SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHP-------  406 (543)
T ss_dssp             TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCT-------
T ss_pred             CCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCc-------
Confidence            666666554 68999999999999988887422111112233 4676 55566654 5799999998663100       


Q ss_pred             cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcc
Q 001311          649 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  728 (1102)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~  728 (1102)
                       ..                                                                             
T Consensus       407 -~~-----------------------------------------------------------------------------  408 (543)
T 1nir_A          407 -QY-----------------------------------------------------------------------------  408 (543)
T ss_dssp             -TT-----------------------------------------------------------------------------
T ss_pred             -hh-----------------------------------------------------------------------------
Confidence             00                                                                             


Q ss_pred             ccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCC
Q 001311          729 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  808 (1102)
Q Consensus       729 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  808 (1102)
                                ...                    .+..                                  +.  .|...
T Consensus       409 ----------~~~--------------------~v~~----------------------------------l~--~~g~~  422 (543)
T 1nir_A          409 ----------AWK--------------------KVAE----------------------------------LQ--GQGGG  422 (543)
T ss_dssp             ----------BTS--------------------EEEE----------------------------------EE--CSCSC
T ss_pred             ----------cCe--------------------EEEE----------------------------------EE--cCCCC
Confidence                      000                    0000                                  00  03344


Q ss_pred             eeEEEEecCCCeEEEEe--------CCeEEEEEcCCCcee-eee--------cCCCCCeeEEEEecCCCcEEEEEe----
Q 001311          809 VPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTM-ATF--------MPPPPAATFLAFHPQDNNIIAIGM----  867 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s--------dg~I~iwd~~~~~~~-~~~--------~~~~~~i~~l~~sp~d~~~lasg~----  867 (1102)
                      +..++++||+++|+++.        +++|.+||+.+++.. ..+        ..+...+..++|+| +|+.|+++.    
T Consensus       423 ~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~g~~~~~s~~~~~  501 (543)
T 1nir_A          423 SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGK  501 (543)
T ss_dssp             CCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECS-SSSEEEEEEECCT
T ss_pred             ceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCC-CCCEEEEEeecCC
Confidence            55677778888877765        468999999988877 443        35577899999999 888888663    


Q ss_pred             -CCCcEEEEEeecceeeeeeccc
Q 001311          868 -DDSSIQIYNVRVDEVKSKLKGH  889 (1102)
Q Consensus       868 -~dg~v~vwd~~~~~~~~~l~~h  889 (1102)
                       .|+.|.|||..+++++.+++.+
T Consensus       502 ~~~~~i~v~D~~t~~~~~~i~~~  524 (543)
T 1nir_A          502 NDSSALVVVDDKTLKLKAVVKDP  524 (543)
T ss_dssp             TSCCEEEEEETTTTEEEEEECCT
T ss_pred             CCCCeEEEEECCCceEEEeecCC
Confidence             4799999999999999988854

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.6e-25  Score=264.20  Aligned_cols=333  Identities=14%  Similarity=0.138  Sum_probs=244.5

Q ss_pred             EEccCCCeEEEEECCCeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeC--CCCeeeE
Q 001311          415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA--TNGAKQY  491 (1102)
Q Consensus       415 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~--~~~~~~~  491 (1102)
                      +|+|++.++++++.|++|.+||..+++.+..   +. +|.  +.+++|+|||+  +|++++.|++|++||+  .+++++.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~---i~~g~~--~~~v~~spdg~--~l~v~~~d~~V~v~D~~~~t~~~~~  216 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKV---IDTGYA--VHISRMSASGR--YLLVIGRDARIDMIDLWAKEPTKVA  216 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEE---EECSTT--EEEEEECTTSC--EEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEE---EecCcc--cceEEECCCCC--EEEEECCCCeEEEEECcCCCCcEEE
Confidence            3889999999999999999999999987653   44 443  89999999999  7888899999999999  8999999


Q ss_pred             EeecCCCCeEEEeeee--cCCccEEEEEeC-CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEE
Q 001311          492 IFEGHEAPVYSVCPHH--KENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  568 (1102)
Q Consensus       492 ~~~~h~~~v~~v~~~~--~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  568 (1102)
                      ++. +...+..++|++  ..+|+++++++. +++|.+||..+.+.+..+..+...+....|          |....+..+
T Consensus       217 ~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~----------~~~~~v~~i  285 (543)
T 1nir_A          217 EIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY----------HPEPRVAAI  285 (543)
T ss_dssp             EEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE----------ESCCCEEEE
T ss_pred             EEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc----------ccCCceEEE
Confidence            888 445678888753  006788888874 899999999987776665442110000001          111234555


Q ss_pred             EEcCCCCE-EEEEeCCCeEEEEECCCcceEE--EEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCCccceee
Q 001311          569 QFDTTKNR-FLAAGDDFSIKFWDMDSVQLLT--SIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRT  644 (1102)
Q Consensus       569 ~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~  644 (1102)
                      .+++++.. +++...++.|.+||+.+.+.+.  .+. .  ...+.++.|+|+|++++++. .+++|.+||..++ ++...
T Consensus       286 ~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~--~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~  361 (543)
T 1nir_A          286 IASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-A--APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSAL  361 (543)
T ss_dssp             EECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-C--CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEE
T ss_pred             EECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-c--CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEe
Confidence            66665444 5566789999999998876544  443 2  23578899999999877665 5789999999877 33332


Q ss_pred             cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCC
Q 001311          645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSE  724 (1102)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~  724 (1102)
                      +....                                                                           
T Consensus       362 i~~g~---------------------------------------------------------------------------  366 (543)
T 1nir_A          362 VDVGK---------------------------------------------------------------------------  366 (543)
T ss_dssp             EECSS---------------------------------------------------------------------------
T ss_pred             eccCC---------------------------------------------------------------------------
Confidence            21000                                                                           


Q ss_pred             CCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCC
Q 001311          725 PNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN  804 (1102)
Q Consensus       725 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  804 (1102)
                                                                                                    ..
T Consensus       367 ------------------------------------------------------------------------------~p  368 (543)
T 1nir_A          367 ------------------------------------------------------------------------------TP  368 (543)
T ss_dssp             ------------------------------------------------------------------------------SB
T ss_pred             ------------------------------------------------------------------------------CC
Confidence                                                                                          00


Q ss_pred             CCCCeeEEEEecC-CCeEEEEe--CCeEEEEEcCC-------CceeeeecCCCCCeeEEEEecCCCcEEEEEe-------
Q 001311          805 PEEAVPCFALSKN-DSYVMSAS--GGKISLFNMMT-------FKTMATFMPPPPAATFLAFHPQDNNIIAIGM-------  867 (1102)
Q Consensus       805 ~~~~i~~l~~s~d-~~~las~s--dg~I~iwd~~~-------~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~-------  867 (1102)
                      |......+ ++|+ +..++++.  |++|.+||+.+       +++++++.+|...+..++|+| ++++|++++       
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~  446 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDAR  446 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHH
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcc
Confidence            22111122 3455 45556653  68888888887       889999999998999999999 999999987       


Q ss_pred             CCCcEEEEEeecceee-eee--------ccccccceeEEEecCCCEEEEE-----cCCCcEEEEEcCCCcc
Q 001311          868 DDSSIQIYNVRVDEVK-SKL--------KGHSKRITGLAFSHALNVLVSS-----GADSQLCVWSSDGWEK  924 (1102)
Q Consensus       868 ~dg~v~vwd~~~~~~~-~~l--------~~h~~~V~~l~~s~d~~~l~s~-----s~Dg~i~vwd~~~~~~  924 (1102)
                      .+++|.|||+.+++.. ..+        ..+...+..++|+|||+.|+++     +.|+.|.|||.++++.
T Consensus       447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~  517 (543)
T 1nir_A          447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKL  517 (543)
T ss_dssp             HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceE
Confidence            2779999999998766 443        4567889999999999998866     2479999999999765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.92  E-value=5e-23  Score=256.53  Aligned_cols=258  Identities=14%  Similarity=0.088  Sum_probs=175.4

Q ss_pred             CCCeeEEEEecCCCeEEEEEec-CC-----eEEEEeCCCCeeEEeeeeeeec-----cCCCCccccccccCCCCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTN-VG-----DIGLWEVGSRERLVLRNFKVWD-----LGACSMPLQAALVKDPGVSVNRV  414 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~-d~-----~i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~l  414 (1102)
                      ...|.+++|||||++ |++++. |+     .|.+||+.+++...........     +..................|.++
T Consensus        36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            457899999999997 777666 88     9999999998765432110000     00000000000000001348899


Q ss_pred             EEccCCCeEEEEECCCeEEEEEccCC---ceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE
Q 001311          415 IWSPDGSLFGVAYSRHIVQIYSYHGG---DEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  491 (1102)
Q Consensus       415 ~~spdg~~las~~~d~~v~vwd~~~~---~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~  491 (1102)
                      +|||||++|++++. +.|++||+.++   +..    .+..|...+.+++|+|||+  .|+.++ ++.|++||+.+++...
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~----~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR----QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCC----BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEE----EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEE
Confidence            99999999999987 99999999988   433    2667888999999999999  577666 4699999999988776


Q ss_pred             EeecCCCC----------------eEEEeeeecCCccEEEEEeCCC---------------------------------e
Q 001311          492 IFEGHEAP----------------VYSVCPHHKENIQFIFSTALDG---------------------------------K  522 (1102)
Q Consensus       492 ~~~~h~~~----------------v~~v~~~~~~~~~~l~s~s~dg---------------------------------~  522 (1102)
                      ....+...                +.++.|  ++||++|++++.|+                                 .
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~  264 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVK  264 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeE
Confidence            55544432                355676  56778888887765                                 7


Q ss_pred             EEEEEcCC-CCCeeeec--CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-----CCCeEEEEECCCc
Q 001311          523 IKAWLYDN-LGSRVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-----DDFSIKFWDMDSV  594 (1102)
Q Consensus       523 i~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~iwd~~~~  594 (1102)
                      |++||+.+ ++......  .+...+                     ..++| |+|++|+.++     .+..|++||+.++
T Consensus       265 l~~~d~~~~~~~~~~~~~~~~~~~~---------------------~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g  322 (741)
T 2ecf_A          265 LGVISPAEQAQTQWIDLGKEQDIYL---------------------ARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN  322 (741)
T ss_dssp             EEEECSSTTCCCEEECCCSCSSEEE---------------------EEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred             EEEEECCCCCceEEecCCCCcceEE---------------------EEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence            77888776 54432221  122334                     44455 5555666554     3678999999999


Q ss_pred             ceEEEEcCCCCC--CCcCeEEEcCCCCEEEEEECCCcEEEEEcc
Q 001311          595 QLLTSIDADGGL--PASPRIRFNKDGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       595 ~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~  636 (1102)
                      +....+..+...  ..+.+++|+|||+++++++.+|.++||.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          323 QQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             CEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             ceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            877766543311  134689999999988888888888888654

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.1e-23  Score=241.26  Aligned_cols=303  Identities=10%  Similarity=0.065  Sum_probs=219.9

Q ss_pred             cccCEEEEEEcCCCCeeEEEEec----CCC----cEEEEeC--CCCeee--EEeecCCCCeEEEeeeec-----------
Q 001311          452 HVGGVNDIAFSHPNKQLCVITCG----DDK----TIKVWDA--TNGAKQ--YIFEGHEAPVYSVCPHHK-----------  508 (1102)
Q Consensus       452 h~~~V~~v~~s~d~~~~~l~s~~----~d~----~i~vWd~--~~~~~~--~~~~~h~~~v~~v~~~~~-----------  508 (1102)
                      +...|....|.+.|.. ++++|+    .||    .|++||+  .+++++  ..+.+|...+..+++.+.           
T Consensus        61 ~~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~  139 (415)
T 2hqs_A           61 SAQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK  139 (415)
T ss_dssp             SGGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred             cccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence            3457888899999887 676776    567    8999999  999988  558899888887766431           


Q ss_pred             -CCccEEEEEeCC------CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe
Q 001311          509 -ENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG  581 (1102)
Q Consensus       509 -~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  581 (1102)
                       ..+..++.++.+      +.|++||++. .....+..+...                     +.+++|+|+|++|++++
T Consensus       140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~---------------------v~~~~~Spdg~~la~~s  197 (415)
T 2hqs_A          140 GAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQP---------------------LMSPAWSPDGSKLAYVT  197 (415)
T ss_dssp             CCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSC---------------------EEEEEECTTSSEEEEEE
T ss_pred             CcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCc---------------------ceeeEEcCCCCEEEEEE
Confidence             013456665554      7999999974 334444434444                     44555555556788888


Q ss_pred             CCC---eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEE-EEECCCc--EEEEEccCCccceeeccccccccccc
Q 001311          582 DDF---SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNG--IKILATSDGIRLLRTFENLAYDASRT  655 (1102)
Q Consensus       582 ~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~  655 (1102)
                      .++   .|++||+.+++... +..+.  ..+.+++|+|||+.|+ +++.++.  |++||+.++. . ..+          
T Consensus       198 ~~~~~~~i~~~d~~tg~~~~-l~~~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~-~-~~l----------  262 (415)
T 2hqs_A          198 FESGRSALVIQTLANGAVRQ-VASFP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-I-RQV----------  262 (415)
T ss_dssp             CTTSSCEEEEEETTTCCEEE-EECCS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC-E-EEC----------
T ss_pred             ecCCCcEEEEEECCCCcEEE-eecCC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC-E-EeC----------
Confidence            775   99999999988764 33332  3688999999999888 5555554  8888887652 1 111          


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311          656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  735 (1102)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  735 (1102)
                                                                                                      
T Consensus       263 --------------------------------------------------------------------------------  262 (415)
T 2hqs_A          263 --------------------------------------------------------------------------------  262 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceEEEEEccCCceEEEeec-Cc--eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEE
Q 001311          736 NLRATKISRLIFTNSGNAILALAS-NA--IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  812 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l  812 (1102)
                      ..+...+.+++|+|||+.|+.++. ++  .|.+|++                      .++....  +..  +...+.++
T Consensus       263 ~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~----------------------~~~~~~~--l~~--~~~~~~~~  316 (415)
T 2hqs_A          263 TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI----------------------NGGAPQR--ITW--EGSQNQDA  316 (415)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET----------------------TSSCCEE--CCC--SSSEEEEE
T ss_pred             cCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC----------------------CCCCEEE--Eec--CCCcccCe
Confidence            114456788999999998888876 45  4444444                      3333222  111  55678899


Q ss_pred             EEecCCCeEEEEe-C---CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC---cEEEEEeecceeeee
Q 001311          813 ALSKNDSYVMSAS-G---GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSK  885 (1102)
Q Consensus       813 ~~s~d~~~las~s-d---g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~  885 (1102)
                      +|+|||++|++++ +   ..|++||+.+++. ..+..+. .+.+++|+| ++++|++++.++   .|++||+. ++....
T Consensus       317 ~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~~~~~  392 (415)
T 2hqs_A          317 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GRFKAR  392 (415)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SCCEEE
T ss_pred             EECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CCcEEE
Confidence            9999999999887 4   4799999998876 4455554 899999999 899998888777   79999986 556788


Q ss_pred             eccccccceeEEEecCC
Q 001311          886 LKGHSKRITGLAFSHAL  902 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~  902 (1102)
                      +.+|.+.|.+++|+|.-
T Consensus       393 l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          393 LPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CCCSSSEEEEEEECCCC
T ss_pred             eeCCCCCCcCCcccccc
Confidence            89999999999999863

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.6e-23  Score=239.78  Aligned_cols=242  Identities=9%  Similarity=0.015  Sum_probs=177.6

Q ss_pred             CCCeeEEEEecCCCeEEEEEe----cCC----eEEEEeC--CCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGT----NVG----DIGLWEV--GSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  415 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~----~d~----~i~iWd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  415 (1102)
                      ...+...+|++.|..++++|+    .||    +|+|||+  .+++.+...                 .+.+|...+..++
T Consensus        62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~-----------------~~~~~~~~~~~~~  124 (415)
T 2hqs_A           62 AQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQN-----------------SYKVNKQWLRYAG  124 (415)
T ss_dssp             GGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEE-----------------EEEECGGGHHHHH
T ss_pred             ccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeee-----------------EEEcChhHHHHHH
Confidence            357888899999988788887    467    8999999  888876432                 2556777777777


Q ss_pred             Ecc--------------CCCeEEEEECC------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311          416 WSP--------------DGSLFGVAYSR------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  475 (1102)
Q Consensus       416 ~sp--------------dg~~las~~~d------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~  475 (1102)
                      +++              .+..++.++.+      +.|++||++++. .+   .+.+|...|.+++|+|||+  .|++++.
T Consensus       125 ~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~  198 (415)
T 2hqs_A          125 HTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTF  198 (415)
T ss_dssp             HHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEe
Confidence            765              26677776654      799999998654 33   4778999999999999999  6888887


Q ss_pred             CC---cEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEE-EEeCCCe--EEEEEcCCCCCeeeecCCCCeeeEEEE
Q 001311          476 DK---TIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIF-STALDGK--IKAWLYDNLGSRVDYEAPGRWCTTMAY  549 (1102)
Q Consensus       476 d~---~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~s~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~  549 (1102)
                      ++   .|++||+.+++.. .+..|...+.+++|+  ++|+.|+ +++.|+.  |++||+.++.. ..+..+...+.+++|
T Consensus       199 ~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~s--pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~  274 (415)
T 2hqs_A          199 ESGRSALVIQTLANGAVR-QVASFPRHNGAPAFS--PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTW  274 (415)
T ss_dssp             TTSSCEEEEEETTTCCEE-EEECCSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEE
T ss_pred             cCCCcEEEEEECCCCcEE-EeecCCCcccCEEEc--CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEE
Confidence            75   9999999999875 566788899999985  5667666 6766654  99999987543 344444444444444


Q ss_pred             ccCCceeeeccccCceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC
Q 001311          550 SADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN  626 (1102)
Q Consensus       550 s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~  626 (1102)
                                           +|++++|++++. ++  .|++||+.+++.. .+..+.  ..+.+++|+|+|++|++++.
T Consensus       275 ---------------------spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdG~~l~~~~~  330 (415)
T 2hqs_A          275 ---------------------FPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEG--SQNQDADVSSDGKFMVMVSS  330 (415)
T ss_dssp             ---------------------CTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSS--SEEEEEEECTTSSEEEEEEE
T ss_pred             ---------------------CCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCC--CcccCeEECCCCCEEEEEEC
Confidence                                 455556777765 44  6888899887643 333332  35778999999999998876


Q ss_pred             C---CcEEEEEccCC
Q 001311          627 D---NGIKILATSDG  638 (1102)
Q Consensus       627 d---g~i~iwd~~~~  638 (1102)
                      +   +.|++||+.++
T Consensus       331 ~~g~~~i~~~d~~~~  345 (415)
T 2hqs_A          331 NGGQQHIAKQDLATG  345 (415)
T ss_dssp             CSSCEEEEEEETTTC
T ss_pred             cCCceEEEEEECCCC
Confidence            4   46777776554

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=1.2e-23  Score=261.34  Aligned_cols=235  Identities=9%  Similarity=0.065  Sum_probs=166.5

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCC---CeEEEEEccCCCeE
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV---SVNRVIWSPDGSLF  423 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~l~~spdg~~l  423 (1102)
                      ..+.+++|||||++ +++ +.||+|++||+.+++...                   ++.+|..   .|.+++|||||++|
T Consensus        17 ~~~~~~~~spdg~~-~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l   75 (723)
T 1xfd_A           17 IHDPEAKWISDTEF-IYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYA   75 (723)
T ss_dssp             CCCCCCCBSSSSCB-CCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEE
T ss_pred             ccccccEEcCCCcE-EEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEE
Confidence            34678999999995 666 689999999999987654                   2455554   49999999999999


Q ss_pred             EEEECC---------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311          424 GVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  494 (1102)
Q Consensus       424 as~~~d---------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~  494 (1102)
                      |+++.+         +.|.+||+.+++. +.+....+|...+.+++|||||+  .|+.++. +.|++||+.+++......
T Consensus        76 ~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~  151 (723)
T 1xfd_A           76 LFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVS  151 (723)
T ss_dssp             EEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEEC
T ss_pred             EEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEec
Confidence            999875         7888999999875 32222335556699999999999  5676665 799999999998877666


Q ss_pred             cCCCCe------------------EEEeeeecCCccEEEEEeCC-CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCce
Q 001311          495 GHEAPV------------------YSVCPHHKENIQFIFSTALD-GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR  555 (1102)
Q Consensus       495 ~h~~~v------------------~~v~~~~~~~~~~l~s~s~d-g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~  555 (1102)
                      .+...+                  .+++|  ++||++|++++.| +.+.+|++......     ....+..+.+.++|. 
T Consensus       152 ~~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~G~-  223 (723)
T 1xfd_A          152 TGKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGS-----IYPTVKPYHYPKAGS-  223 (723)
T ss_dssp             CCBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSS-----SSCCCEEEECCBTTS-
T ss_pred             CCCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCc-----CCCcceeccCCCCCC-
Confidence            544433                  66777  5667888887754 56777876532211     112244444444442 


Q ss_pred             eeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC----CCCCcCeEEEcCCCCEEEEEECC----
Q 001311          556 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND----  627 (1102)
Q Consensus       556 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d----  627 (1102)
                                          .    ..+..|++||+.+++....+..+.    +...+..++|+|||++|++....    
T Consensus       224 --------------------~----~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~  279 (723)
T 1xfd_A          224 --------------------E----NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV  279 (723)
T ss_dssp             --------------------C----CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred             --------------------C----CCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCe
Confidence                                1    234589999999888656665331    12357789999999988776532    


Q ss_pred             CcEEEEEccCC
Q 001311          628 NGIKILATSDG  638 (1102)
Q Consensus       628 g~i~iwd~~~~  638 (1102)
                      ..|++||+.++
T Consensus       280 ~~i~~~d~~~g  290 (723)
T 1xfd_A          280 SILTLCDATTG  290 (723)
T ss_dssp             EEEEEEETTTC
T ss_pred             EEEEEEeCCCC
Confidence            46777776655

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=8.3e-23  Score=254.53  Aligned_cols=343  Identities=12%  Similarity=0.026  Sum_probs=226.1

Q ss_pred             CCCeEEEEEccCCCeEEEEEC-CC-----eEEEEEccCCceeeeEEEeeccc------------------------cCEE
Q 001311          408 GVSVNRVIWSPDGSLFGVAYS-RH-----IVQIYSYHGGDEVRQHLEIDAHV------------------------GGVN  457 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~-d~-----~v~vwd~~~~~~~~~~~~l~~h~------------------------~~V~  457 (1102)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....   +..+.                        ..|.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  112 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLL---VDSKVVLPGTETLSDEEKARRERQRIAAMTGIV  112 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEE---ECGGGTC--------------------CCEESC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEc---cchhhcccccccccchhhhhhhhhhhccccCcc
Confidence            457999999999999999998 88     899999999875432   33332                        2388


Q ss_pred             EEEEcCCCCeeEEEEecCCCcEEEEeCCCCe--eeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee
Q 001311          458 DIAFSHPNKQLCVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV  535 (1102)
Q Consensus       458 ~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~  535 (1102)
                      +++|+|||+  .|++++. +.|++||+.++.  .+..+..|...+..++|+  +||++|++++ ++.|++||+.++....
T Consensus       113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~S--PDG~~la~~~-~~~i~~~d~~~g~~~~  186 (741)
T 2ecf_A          113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLS--PKGGFVSFIR-GRNLWVIDLASGRQMQ  186 (741)
T ss_dssp             CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEEC--TTSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCC--CCCCEEEEEe-CCcEEEEecCCCCEEE
Confidence            999999999  5777665 899999999883  455677788889999984  6678888887 4699999998754433


Q ss_pred             eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC-------------------------------
Q 001311          536 DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-------------------------------  584 (1102)
Q Consensus       536 ~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------------------------------  584 (1102)
                      ....+...+..   . -...+. ......+..+.|+|||++|++++.|+                               
T Consensus       187 ~~~~~~~~~~~---g-~~~~v~-~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          187 LTADGSTTIGN---G-IAEFVA-DEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             CCCCCCSSEEE---S-CCCHHH-HHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             eccCCccceec---c-ccceee-eeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            22222211100   0 000000 00001123344555555555554433                               


Q ss_pred             --eEEEEECCC-cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC-----CCcEEEEEccCCccceeecccccccccccC
Q 001311          585 --SIKFWDMDS-VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN-----DNGIKILATSDGIRLLRTFENLAYDASRTS  656 (1102)
Q Consensus       585 --~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  656 (1102)
                        .|++||+.+ ++.........+...+..++| |||++|+++..     +..|++||+.++ +....+..+        
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g-~~~~~~~~~--------  331 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN-QQRVLAHET--------  331 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC-CEEEEEEEE--------
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC-ceEEEEEcC--------
Confidence              789999988 876554432233446789999 99999997764     456777776655 111111000        


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311          657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  736 (1102)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  736 (1102)
                                                                                                      
T Consensus       332 --------------------------------------------------------------------------------  331 (741)
T 2ecf_A          332 --------------------------------------------------------------------------------  331 (741)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                                            .++                                           .-..+..++|+|
T Consensus       332 ----------------------~~~-------------------------------------------~~~~~~~~~~sp  346 (741)
T 2ecf_A          332 ----------------------SPT-------------------------------------------WVPLHNSLRFLD  346 (741)
T ss_dssp             ----------------------CSS-------------------------------------------CCCCCSCCEECT
T ss_pred             ----------------------CCC-------------------------------------------cCCcCCceEECC
Confidence                                  000                                           001234567788


Q ss_pred             CCCeEEEEe-CCeEEEEEcC-CCceeeeecCCCCCeeEE-EEecCCCcEE-EEEeCCC--cEEEEEeec-ceeeeeeccc
Q 001311          817 NDSYVMSAS-GGKISLFNMM-TFKTMATFMPPPPAATFL-AFHPQDNNII-AIGMDDS--SIQIYNVRV-DEVKSKLKGH  889 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~-~~~~~~~~~~~~~~i~~l-~~sp~d~~~l-asg~~dg--~v~vwd~~~-~~~~~~l~~h  889 (1102)
                      ||+++++++ +|.++||.+. ++. ...+..+...+..+ +|+| +++.| ++++.++  .++||++.. ++....+.. 
T Consensus       347 dg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-  423 (741)
T 2ecf_A          347 DGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-  423 (741)
T ss_dssp             TSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-
T ss_pred             CCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-
Confidence            888777666 6766666654 344 67777787888887 5999 77655 4555555  899999975 555666765 


Q ss_pred             cccceeEEEecCCCEEEEEcCC----CcEEEEEcCCC
Q 001311          890 SKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGW  922 (1102)
Q Consensus       890 ~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~  922 (1102)
                      ...+.+++|+|||++|+....+    ..+.+|+..++
T Consensus       424 ~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~~  460 (741)
T 2ecf_A          424 APGMHSASFARNASVYVDSWSNNSTPPQIELFRANGE  460 (741)
T ss_dssp             SCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTSC
T ss_pred             CCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCCC
Confidence            5668899999999998876544    46889988653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.90  E-value=9.3e-22  Score=243.47  Aligned_cols=249  Identities=7%  Similarity=-0.002  Sum_probs=157.0

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCee--EEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER--LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      .+..+.|+  |+. +++++.|+ | +||+.+++.  .......  .+.. ...........+...|.+++|||| ++++.
T Consensus        27 ~~~~~~w~--g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~--~~~~-~l~~~~~~~~~~~~~v~~~~~spd-~~~~~   97 (706)
T 2z3z_A           27 YVVGLQWM--GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAA--DLNA-LMPEGCKFQTTDAFPSFRTLDAGR-GLVVL   97 (706)
T ss_dssp             -CTTCEEE--TTE-EEEEETTE-E-EEEC-------CEEEEHH--HHHT-TC-----------CCCEEEEETTT-TEEEE
T ss_pred             cCCCCcCc--CCe-EEEEeCCc-E-EEECCCCcEeeEEeechh--Hhhh-hccchhccccccccCceeEEECCC-CeEEE
Confidence            35567888  555 55566677 8 999999876  2211000  0000 000000000112257999999999 66666


Q ss_pred             EECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC-----CeeeEEeecCCCC-
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN-----GAKQYIFEGHEAP-  499 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~-----~~~~~~~~~h~~~-  499 (1102)
                      +. ++.|++||+.+++...    +..+...+.+++|+|||+  .|+++ .|+.|++||+.+     ++.......+... 
T Consensus        98 ~~-~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~SpdG~--~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~  169 (706)
T 2z3z_A           98 FT-QGGLVGFDMLARKVTY----LFDTNEETASLDFSPVGD--RVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETL  169 (706)
T ss_dssp             EE-TTEEEEEETTTTEEEE----EECCTTCCTTCEECTTSS--EEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTE
T ss_pred             EE-CCEEEEEECCCCceEE----ccCCcccccCCcCCCCCC--EEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCe
Confidence            54 5999999999886543    556778899999999999  56664 679999999998     8776655444443 


Q ss_pred             -------------eEEEeeeecCCccEEEEEe---------------------------------CCCeEEEEEcCCCCC
Q 001311          500 -------------VYSVCPHHKENIQFIFSTA---------------------------------LDGKIKAWLYDNLGS  533 (1102)
Q Consensus       500 -------------v~~v~~~~~~~~~~l~s~s---------------------------------~dg~i~~wd~~~~~~  533 (1102)
                                   +.++.|  ++||++|++++                                 .+..|++||+.++..
T Consensus       170 ~~g~~~~~ee~~~~~~~~~--SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~  247 (706)
T 2z3z_A          170 VYGQAVHQREFGIEKGTFW--SPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT  247 (706)
T ss_dssp             EESSCCGGGCTTCCCSEEE--CTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE
T ss_pred             EcccchhhhhcCCCceEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce
Confidence                         366777  56778898887                                 346788898876543


Q ss_pred             eeeec--CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC-----eEEEEECCCcceEEEEcCCCCC
Q 001311          534 RVDYE--APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF-----SIKFWDMDSVQLLTSIDADGGL  606 (1102)
Q Consensus       534 ~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~  606 (1102)
                      .....  .+..                     .+..++|+|++++|++++.++     .|++||+.+++....+......
T Consensus       248 ~~~~~~~~~~~---------------------~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~  306 (706)
T 2z3z_A          248 VYLQTGEPKEK---------------------FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK  306 (706)
T ss_dssp             EECCCCSCTTC---------------------EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred             EeeccCCCCce---------------------eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence            22211  1222                     344555666666788776664     8999999998433333211111


Q ss_pred             ---CCcCeEEEcC--CCCEEEEEECCCcEEEEEcc
Q 001311          607 ---PASPRIRFNK--DGCLLAVSTNDNGIKILATS  636 (1102)
Q Consensus       607 ---~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~  636 (1102)
                         ..+.+++|+|  ||++++++..+|.+++|.+.
T Consensus       307 ~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          307 HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence               1246789999  99999999889999998764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=5.5e-22  Score=246.46  Aligned_cols=379  Identities=9%  Similarity=0.016  Sum_probs=225.4

Q ss_pred             CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeecccc---CEEEEEEcCCCCeeEEEEecCC---------
Q 001311          409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVG---GVNDIAFSHPNKQLCVITCGDD---------  476 (1102)
Q Consensus       409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~---~V~~v~~s~d~~~~~l~s~~~d---------  476 (1102)
                      ..+.+++|||||+++++ +.||+|++||+.+++...   .+.+|..   .|.+++|||||+  +|++++.+         
T Consensus        17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~--~l~~~~~~~~~~~~~~~   90 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDRE--YALFSYNVEPIYQHSYT   90 (723)
T ss_dssp             CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSS--EEEEEESCCCCSSSCCC
T ss_pred             ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEE---EeccccccccccceEEECCCCC--EEEEEecCccceeecce
Confidence            35788999999998877 789999999999987654   3555654   499999999999  67777654         


Q ss_pred             CcEEEEeCCCCeeeEEee---cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311          477 KTIKVWDATNGAKQYIFE---GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  553 (1102)
Q Consensus       477 ~~i~vWd~~~~~~~~~~~---~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  553 (1102)
                      +.|++||+.+++. ..+.   +|...+..++|  ++||+.|++++. +.|++||+.+++.......+...+         
T Consensus        91 ~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~--SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~---------  157 (723)
T 1xfd_A           91 GYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGW--GPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV---------  157 (723)
T ss_dssp             SEEEEEESSSCCC-EECCCTTCCSCCCSBCCB--CSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT---------
T ss_pred             eeEEEEECCCCce-EeccCCccccccccccEE--CCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc---------
Confidence            7888999999886 3343   45555777887  466688888876 899999998765544332221111         


Q ss_pred             ceeeeccc--------cCceeEEEEcCCCCEEEEEeC-CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE
Q 001311          554 TRTYQGFR--------KRSLGVVQFDTTKNRFLAAGD-DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS  624 (1102)
Q Consensus       554 ~~~~~~~~--------~~~i~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  624 (1102)
                        ++.|..        ...+..++|+|||++|++++. ++.+.+|++.....       .....+..+.|.++|..    
T Consensus       158 --~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~G~~----  224 (723)
T 1xfd_A          158 --IYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------SIYPTVKPYHYPKAGSE----  224 (723)
T ss_dssp             --EEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------SSSCCCEEEECCBTTSC----
T ss_pred             --eECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC-------cCCCcceeccCCCCCCC----
Confidence              011110        012345666666666766653 34566666532210       01123445555555542    


Q ss_pred             ECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCc
Q 001311          625 TNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKP  704 (1102)
Q Consensus       625 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  704 (1102)
                      ..+..|++||+.++. ....+..+...                                                     
T Consensus       225 ~~~~~l~~~d~~~~~-~~~~l~~~~~~-----------------------------------------------------  250 (723)
T 1xfd_A          225 NPSISLHVIGLNGPT-HDLEMMPPDDP-----------------------------------------------------  250 (723)
T ss_dssp             CCEEEEEEEESSSSC-CCEECCCCCCG-----------------------------------------------------
T ss_pred             CCeeEEEEEECCCCc-eeEEeeCCccC-----------------------------------------------------
Confidence            122355666654441 11111000000                                                     


Q ss_pred             cccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCccccccc
Q 001311          705 RITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVA  784 (1102)
Q Consensus       705 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~  784 (1102)
                                                     ..                                               
T Consensus       251 -------------------------------~~-----------------------------------------------  252 (723)
T 1xfd_A          251 -------------------------------RM-----------------------------------------------  252 (723)
T ss_dssp             -------------------------------GG-----------------------------------------------
T ss_pred             -------------------------------CC-----------------------------------------------
Confidence                                           00                                               


Q ss_pred             ceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-----CCeEEEEEcCCCceeeeecC-CCCCe----eEEE
Q 001311          785 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-----GGKISLFNMMTFKTMATFMP-PPPAA----TFLA  854 (1102)
Q Consensus       785 ~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-----dg~I~iwd~~~~~~~~~~~~-~~~~i----~~l~  854 (1102)
                                          +...+..++|+|||+++++..     +..|++||+.+++....+.. +...+    ..++
T Consensus       253 --------------------~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~  312 (723)
T 1xfd_A          253 --------------------REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPV  312 (723)
T ss_dssp             --------------------SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCE
T ss_pred             --------------------ccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCce
Confidence                                233345566666666555443     24688999988887665543 23333    3789


Q ss_pred             EecCCCcEEEE--EeCCC------cEEEEE-eecce--eeeeecccccccee-EEEecCCCEEEEEcCC---CcEEEEEc
Q 001311          855 FHPQDNNIIAI--GMDDS------SIQIYN-VRVDE--VKSKLKGHSKRITG-LAFSHALNVLVSSGAD---SQLCVWSS  919 (1102)
Q Consensus       855 ~sp~d~~~las--g~~dg------~v~vwd-~~~~~--~~~~l~~h~~~V~~-l~~s~d~~~l~s~s~D---g~i~vwd~  919 (1102)
                      |+| ||+.|+.  +..++      .|++|| ..+++  +...+..+...+.. ++|+|||+.|+..+.+   +.+++|++
T Consensus       313 ~sp-dg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  391 (723)
T 1xfd_A          313 FSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSA  391 (723)
T ss_dssp             ECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEE
T ss_pred             EcC-CCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEE
Confidence            999 7776664  45667      566677 34443  15555544444554 6999999999766554   78999998


Q ss_pred             CCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCC--eEEEEEcCCceEee
Q 001311          920 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET--QLAIFETTKLECVK  975 (1102)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~--~i~iwd~~~~~~~~  975 (1102)
                      ..........+   .........+..++|+|||++++..  ..+  ...+++..++..+.
T Consensus       392 ~~~~~~~~~~l---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~  448 (723)
T 1xfd_A          392 NTVGNFNRQCL---SCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMF  448 (723)
T ss_dssp             CSSTTCCCBCS---STTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEE
T ss_pred             eCCCCCCccee---cccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEE
Confidence            75322111111   1100011357899999999999884  222  33455655554433

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=3e-21  Score=215.82  Aligned_cols=299  Identities=10%  Similarity=0.145  Sum_probs=200.8

Q ss_pred             ccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC-ceEEeeeccccccCCCCccccc
Q 001311          704 PRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATAS  782 (1102)
Q Consensus       704 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~  782 (1102)
                      .+++++.++.|++|++...........+     .+...+..++|+|+|+++++++.+ +.+.+|++..            
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~------------   69 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-----DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP------------   69 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-----ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT------------
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-----ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC------------
Confidence            3445477899999999642111112221     255678889999999988888886 9999998741            


Q ss_pred             ccceeccCCCccccc-cccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEc---CCCceeeeecCCCCCeeEEEEe
Q 001311          783 VAPQLWQPPSGIMMT-NDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNM---MTFKTMATFMPPPPAATFLAFH  856 (1102)
Q Consensus       783 ~~~~~w~~~~~~~~~-~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~---~~~~~~~~~~~~~~~i~~l~~s  856 (1102)
                              .++.... ..+.   ....+..++|+|+++++++++  ++.|.+||+   ...+....+..+ ..+.+++|+
T Consensus        70 --------~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s  137 (343)
T 1ri6_A           70 --------DDGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS  137 (343)
T ss_dssp             --------TTCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC
T ss_pred             --------CCCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC
Confidence                    1111110 0011   123688999999999887765  688999999   444455555543 458999999


Q ss_pred             cCCCcEEEEEe-CCCcEEEEEeec-ceeee----eecc-ccccceeEEEecCCCEEEEE-cCCCcEEEEEcCC--Ccccc
Q 001311          857 PQDNNIIAIGM-DDSSIQIYNVRV-DEVKS----KLKG-HSKRITGLAFSHALNVLVSS-GADSQLCVWSSDG--WEKQK  926 (1102)
Q Consensus       857 p~d~~~lasg~-~dg~v~vwd~~~-~~~~~----~l~~-h~~~V~~l~~s~d~~~l~s~-s~Dg~i~vwd~~~--~~~~~  926 (1102)
                      | ++++|++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|++++|+++ ..++.|.+|++..  ++...
T Consensus       138 ~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          138 P-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             T-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE
T ss_pred             C-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE
Confidence            9 888777777 899999999987 65432    2222 33467889999999977554 5889999999954  33322


Q ss_pred             eeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E-eCCeEEEEEcC--C--ceEeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311          927 NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETT--K--LECVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus       927 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~-~d~~i~iwd~~--~--~~~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
                      ................+..++|+|+|++|++ . .++.|.+||+.  +  .+.+..+.  .+. .+.+++|+|||++|++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQP--TET-QPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEE--CSS-SCCCEEECTTSSEEEE
T ss_pred             EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeec--CCC-ccceEEECCCCCEEEE
Confidence            2222222211111234568999999998886 4 67899999998  3  34444443  223 3899999999999888


Q ss_pred             Ee-CCCeEEEEEc--CCceeE--EEeCCCcccCCCCCCCcccceEEEecCC
Q 001311         1001 CF-LDATVCVFSA--ANLKLR--CRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus      1001 ~s-~Dg~I~vwd~--~~~~~~--~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
                      ++ .|+.|.+|++  .++++.  ..+.      .+     ..|..++|.|+
T Consensus       294 ~~~~~~~v~v~~~d~~~g~~~~~~~~~------~g-----~~p~~i~~~~~  333 (343)
T 1ri6_A          294 AGQKSHHISVYEIVGEQGLLHEKGRYA------VG-----QGPMWVVVNAH  333 (343)
T ss_dssp             ECTTTCEEEEEEEETTTTEEEEEEEEE------CS-----SSCCEEEEEEE
T ss_pred             ecCCCCeEEEEEEcCCCceeeEccccc------cC-----CCCeeEEEEcc
Confidence            87 6899999954  466543  3332      12     23557888774

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=3.6e-21  Score=238.24  Aligned_cols=336  Identities=8%  Similarity=0.013  Sum_probs=214.9

Q ss_pred             CeEEEEEccCCCeEEEEECCCeEEEEEccCCcee-eeEEEeeccc-----------------cCEEEEEEcCCCCeeEEE
Q 001311          410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHV-----------------GGVNDIAFSHPNKQLCVI  471 (1102)
Q Consensus       410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~-~~~~~l~~h~-----------------~~V~~v~~s~d~~~~~l~  471 (1102)
                      .+..+.|+  |+.+++++.|+ | +||+.+++.+ ..   +..|.                 ..|.+++|+|| +. +++
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~   97 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVL   97 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEE
T ss_pred             cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEE
Confidence            35557888  77778888888 8 9999998763 32   22333                 56999999999 53 344


Q ss_pred             EecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC-----CCCeeeecCCCCeeeE
Q 001311          472 TCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN-----LGSRVDYEAPGRWCTT  546 (1102)
Q Consensus       472 s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~-----~~~~~~~~~~~~~v~~  546 (1102)
                      +  .++.|++||+.+++.... ..+...+.+++|  +++|++|+++ .|+.|++||+.+     ++...........+. 
T Consensus        98 ~--~~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~-  170 (706)
T 2z3z_A           98 F--TQGGLVGFDMLARKVTYL-FDTNEETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLV-  170 (706)
T ss_dssp             E--ETTEEEEEETTTTEEEEE-ECCTTCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEE-
T ss_pred             E--ECCEEEEEECCCCceEEc-cCCcccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeE-
Confidence            4  359999999998876544 446677877887  4667888885 679999999987     554433222222110 


Q ss_pred             EEEccCCceeeeccccCceeEEEEcCCCCEEEEEe---------------------------------CCCeEEEEECCC
Q 001311          547 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG---------------------------------DDFSIKFWDMDS  593 (1102)
Q Consensus       547 ~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------------------------------~dg~i~iwd~~~  593 (1102)
                        ...   ..+ ......+..+.|+|||++|++++                                 .+..|++||+.+
T Consensus       171 --~g~---~~~-~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~  244 (706)
T 2z3z_A          171 --YGQ---AVH-QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLAT  244 (706)
T ss_dssp             --ESS---CCG-GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTT
T ss_pred             --ccc---chh-hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCC
Confidence              000   000 00011234455555666666655                                 457899999998


Q ss_pred             cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC-----cEEEEEccCCccceeecccccccccccCCCCCCCcccchh
Q 001311          594 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN-----GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISA  668 (1102)
Q Consensus       594 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (1102)
                      ++.........+...+.+++|+|||++|++++.++     .|++||+.++. ....+.                      
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~-~~~~~~----------------------  301 (706)
T 2z3z_A          245 GKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR-FVRTLF----------------------  301 (706)
T ss_dssp             TEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC-EEEEEE----------------------
T ss_pred             CceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc-eeeEEE----------------------
Confidence            87655443323334678999999999999887765     78888876551 111000                      


Q ss_pred             hhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEc
Q 001311          669 AAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT  748 (1102)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  748 (1102)
                                                                                                      
T Consensus       302 --------------------------------------------------------------------------------  301 (706)
T 2z3z_A          302 --------------------------------------------------------------------------------  301 (706)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec--CCCeEEEEe-
Q 001311          749 NSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK--NDSYVMSAS-  825 (1102)
Q Consensus       749 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~--d~~~las~s-  825 (1102)
                             .....                                           .....+.+++|+|  ||++++++. 
T Consensus       302 -------~~~~~-------------------------------------------~~~~~~~~~~~sp~~dg~~l~~~~~  331 (706)
T 2z3z_A          302 -------VETDK-------------------------------------------HYVEPLHPLTFLPGSNNQFIWQSRR  331 (706)
T ss_dssp             -------EEECS-------------------------------------------SCCCCCSCCEECTTCSSEEEEEECT
T ss_pred             -------EccCC-------------------------------------------CeECccCCceeecCCCCEEEEEEcc
Confidence                   00000                                           0011234567788  888777776 


Q ss_pred             CCeEEEEEcC-CCceeeeecCCCCCeeE-EEEecCCCcEEEEEe-CCC----cEEEEEeecceeeeeeccccccceeEEE
Q 001311          826 GGKISLFNMM-TFKTMATFMPPPPAATF-LAFHPQDNNIIAIGM-DDS----SIQIYNVRVDEVKSKLKGHSKRITGLAF  898 (1102)
Q Consensus       826 dg~I~iwd~~-~~~~~~~~~~~~~~i~~-l~~sp~d~~~lasg~-~dg----~v~vwd~~~~~~~~~l~~h~~~V~~l~~  898 (1102)
                      |+.++||.+. ++..+..+..+...+.. ++|+| +++.|+.++ .++    .|+.||+.+++ ...+. |...+.+++|
T Consensus       332 ~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~  408 (706)
T 2z3z_A          332 DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQL  408 (706)
T ss_dssp             TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEE
T ss_pred             CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEE
Confidence            7777888775 56667777777777876 79999 777665544 444    56666766655 34444 6677999999


Q ss_pred             ecCCCEEEEEcCC----CcEEEEEcCCCc
Q 001311          899 SHALNVLVSSGAD----SQLCVWSSDGWE  923 (1102)
Q Consensus       899 s~d~~~l~s~s~D----g~i~vwd~~~~~  923 (1102)
                      +|||++|+..+.+    +.|++||+.+++
T Consensus       409 spdg~~l~~~~~~~~~p~~i~l~d~~~~~  437 (706)
T 2z3z_A          409 SPDGSAIIDIFQSPTVPRKVTVTNIGKGS  437 (706)
T ss_dssp             CTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred             CCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence            9999998876443    459999998865

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=3.5e-20  Score=206.10  Aligned_cols=239  Identities=13%  Similarity=0.068  Sum_probs=173.5

Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC-CC
Q 001311          352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-RH  430 (1102)
Q Consensus       352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d~  430 (1102)
                      ..|.+++++++++++.++.|.+||..+++.+..                   +..+...+ +++|+|||++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            457788888899999999999999999988663                   23345556 9999999998777666 89


Q ss_pred             eEEEEEccCCce-eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC-C--cEEEEeCCCCeeeEEeecCCCCeEEEeee
Q 001311          431 IVQIYSYHGGDE-VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-K--TIKVWDATNGAKQYIFEGHEAPVYSVCPH  506 (1102)
Q Consensus       431 ~v~vwd~~~~~~-~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~--~i~vWd~~~~~~~~~~~~h~~~v~~v~~~  506 (1102)
                      .|.+||..+++. ..   .+..+..+..+++|+||++  +++++..+ +  .|.+||+.+++.+..+..+ ....+++|+
T Consensus        63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s  136 (331)
T 3u4y_A           63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS  136 (331)
T ss_dssp             EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred             eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence            999999999875 33   3555666666699999999  56655544 3  8999999999998888754 446788875


Q ss_pred             ecCCcc-EEEEEeCCCe-EEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CC
Q 001311          507 HKENIQ-FIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DD  583 (1102)
Q Consensus       507 ~~~~~~-~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d  583 (1102)
                        ++|+ ++++...++. |.+|+++..+......        .       ..+  ........++|+|+++++++++ .+
T Consensus       137 --pdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~--------~-------~~~--~~~~~~~~~~~spdg~~l~v~~~~~  197 (331)
T 3u4y_A          137 --PNGNGLILIDRSSANTVRRFKIDADGVLFDTG--------Q-------EFI--SGGTRPFNITFTPDGNFAFVANLIG  197 (331)
T ss_dssp             --TTSSCEEEEEETTTTEEEEEEECTTCCEEEEE--------E-------EEE--CSSSSEEEEEECTTSSEEEEEETTT
T ss_pred             --CCCCEEEEEecCCCceEEEEEECCCCcEeecC--------C-------ccc--cCCCCccceEECCCCCEEEEEeCCC
Confidence              5555 4455556688 9999998654332111        0       000  0112356677788887665554 68


Q ss_pred             CeEEEEECCCcce---EEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCC
Q 001311          584 FSIKFWDMDSVQL---LTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  638 (1102)
Q Consensus       584 g~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  638 (1102)
                      +.|++||+.+++.   +..+...   ..+..++|+|||++|+++. .++.|.+||..++
T Consensus       198 ~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~  253 (331)
T 3u4y_A          198 NSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG  253 (331)
T ss_dssp             TEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECSSEEEEEEEETTTT
T ss_pred             CeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEcCCCEEEEEECCCC
Confidence            9999999999988   7777644   2478899999999877665 4778999998876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=2.3e-20  Score=208.67  Aligned_cols=245  Identities=12%  Similarity=0.155  Sum_probs=174.9

Q ss_pred             CCCCeeEEEEecCCCeEEEEe-C-CeEEEEEcC--CCc--eeeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEe
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-G-GKISLFNMM--TFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNV  877 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-d-g~I~iwd~~--~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~  877 (1102)
                      +...+.+++|+|++++|++++ + +.|.+|++.  +++  .+..+..+. .+..++|+| ++++|++++ .++.|++||+
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~  113 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL  113 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence            556788999999999988887 4 899999997  544  334455444 789999999 888776665 4889999999


Q ss_pred             ---ecceeeeeeccccccceeEEEecCCCEEEEEc-CCCcEEEEEcCC-Cccccee--eeecCCCCCCCCCCCcEEEEcc
Q 001311          878 ---RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDG-WEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       878 ---~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~-~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                         .+.+.+..+..+. .+.+++|+||+++|++++ .++.|++||+.+ ++.....  ......+     ..+..++|+|
T Consensus       114 ~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p  187 (343)
T 1ri6_A          114 EDGLPVGVVDVVEGLD-GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHP  187 (343)
T ss_dssp             ETTEEEEEEEEECCCT-TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECT
T ss_pred             CCCccccccccccCCC-CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC-----CCcceEEECC
Confidence               4555556665443 588999999999888777 899999999987 4432211  2222222     2567899999


Q ss_pred             CCcEEEE-E-eCCeEEEEEcCC--ceE--eeeec--cCCC--CCCeeEEEEcCCCcEEEEE-eCCCeEEEEEcC--C--c
Q 001311          951 DQIHFLV-V-HETQLAIFETTK--LEC--VKQWV--PRES--SAPITHATFSCDSQLVYAC-FLDATVCVFSAA--N--L 1015 (1102)
Q Consensus       951 dg~~l~~-~-~d~~i~iwd~~~--~~~--~~~~~--~~~h--~~~v~~l~~spd~~~l~s~-s~Dg~I~vwd~~--~--~ 1015 (1102)
                      +|+++++ + .++.|.+|++..  ++.  .....  ..++  ...+..++|+|||++|+++ ..|+.|++||+.  +  .
T Consensus       188 dg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~  267 (343)
T 1ri6_A          188 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  267 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce
Confidence            9998876 4 678999999953  432  22221  1111  3467789999999988754 478999999998  3  3


Q ss_pred             eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe-cCCcEEEEeccCCC
Q 001311         1016 KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus      1016 ~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
                      +.+..+.      .+  .   .+..++|+| |+++|++++ .|+.|.+|++....
T Consensus       268 ~~~~~~~------~~--~---~~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~~~  310 (343)
T 1ri6_A          268 SKEGFQP------TE--T---QPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQ  310 (343)
T ss_dssp             EEEEEEE------CS--S---SCCCEEECT-TSSEEEEECTTTCEEEEEEEETTT
T ss_pred             EEeeeec------CC--C---ccceEEECC-CCCEEEEecCCCCeEEEEEEcCCC
Confidence            4444443      11  1   133799999 578777777 68999999776443

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.87  E-value=3.6e-20  Score=205.94  Aligned_cols=285  Identities=13%  Similarity=0.067  Sum_probs=196.8

Q ss_pred             EEEccCCce-EEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEE
Q 001311          745 LIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS  823 (1102)
Q Consensus       745 ~~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las  823 (1102)
                      ..|.+++.. +++...++.|.+||..                      +++...... .  +...+ .++|+||++++++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~-~--~~~~~-~~~~s~dg~~l~~   56 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTD----------------------TLEILNQIT-L--GYDFV-DTAITSDCSNVVV   56 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETT----------------------TCCEEEEEE-C--CCCEE-EEEECSSSCEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCc----------------------ccceeeeEE-c--cCCcc-eEEEcCCCCEEEE
Confidence            345555555 5566678999998863                      333222111 1  34445 9999999997776


Q ss_pred             Ee--CCeEEEEEcCCCce-eeeecCCCCCeeEEEEecCCCcEEEEEeCCC---cEEEEEeecceeeeeeccccccceeEE
Q 001311          824 AS--GGKISLFNMMTFKT-MATFMPPPPAATFLAFHPQDNNIIAIGMDDS---SIQIYNVRVDEVKSKLKGHSKRITGLA  897 (1102)
Q Consensus       824 ~s--dg~I~iwd~~~~~~-~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg---~v~vwd~~~~~~~~~l~~h~~~V~~l~  897 (1102)
                      ++  ++.|.+||+.+++. ...+..+.....+++|+| ++++|+++..++   .|++||+.+++.+..+..+. ...+++
T Consensus        57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~  134 (331)
T 3u4y_A           57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIA  134 (331)
T ss_dssp             EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEE
T ss_pred             EeCCCCeEEEEECCCCceeEEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceE
Confidence            65  68999999999887 777776666665599999 898888655553   89999999998888776543 468999


Q ss_pred             EecCCCEEEE-EcCCCc-EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceE
Q 001311          898 FSHALNVLVS-SGADSQ-LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC  973 (1102)
Q Consensus       898 ~s~d~~~l~s-~s~Dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~  973 (1102)
                      |+|||++|++ ...++. |.+|++................    ......++|+|||++++++  .++.|.+||+.+++.
T Consensus       135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG----GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS----SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC----CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            9999985554 456688 9999998643221110111111    1246899999999977664  578999999999887


Q ss_pred             ---eeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCcee--EEEeCCCcccCCCCCCCccc-ceEEEecCC
Q 001311          974 ---VKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKL--RCRINPSAYLPAGVSSSNVH-PLVIAAHPQ 1046 (1102)
Q Consensus       974 ---~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~--~~~~~~~~~~~~gh~~~~v~-~~~v~f~p~ 1046 (1102)
                         +..+..   ...+..++|+|||++|++++ .++.|.+||+.+++.  +..+.........   . .. .-.++|+| 
T Consensus       211 ~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~sp-  282 (331)
T 3u4y_A          211 ITLLNAVGT---NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR---P-LFGANQMALNK-  282 (331)
T ss_dssp             CEEEEEEEC---SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG---G-GTTCCCEEECT-
T ss_pred             cceeeeccC---CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC---C-cccccceEECC-
Confidence               666642   46778999999999876665 578899999999987  4333311001111   0 11 12589999 


Q ss_pred             CCCEEE-EEecCCcEEEEeccCCC
Q 001311         1047 EPNEFA-LGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1047 d~~~l~-s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      |+++|+ ++..++.|.+||+.+..
T Consensus       283 dg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          283 TETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             TSSEEEEEETTTTEEEEEETTSCE
T ss_pred             CCCEEEEecCCCCcEEEEEecCCc
Confidence            567665 55556799999998766

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=3.8e-20  Score=206.23  Aligned_cols=181  Identities=13%  Similarity=0.088  Sum_probs=142.2

Q ss_pred             CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEE
Q 001311          826 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL  905 (1102)
Q Consensus       826 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l  905 (1102)
                      ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++  ++.|++||+.+++.+..+..+.. ...+.|+||++.|
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l  188 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAV  188 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCC
T ss_pred             CceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEE
Confidence            58899999999888777764 45688899999 88888777  68999999999988877765431 1234789999877


Q ss_pred             EEEcCCC------------------------cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001311          906 VSSGADS------------------------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  961 (1102)
Q Consensus       906 ~s~s~Dg------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~  961 (1102)
                      +..+.++                        .|.+||+.+++.. ......   +.   ..+..++|+|||++++++ ++
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~~---~~~~~~~~s~dg~~l~~~-~~  260 (337)
T 1pby_B          189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---MD---VFYFSTAVNPAKTRAFGA-YN  260 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---CS---SCEEEEEECTTSSEEEEE-ES
T ss_pred             eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---CC---CceeeEEECCCCCEEEEe-CC
Confidence            6554332                        3689999987653 111111   11   246789999999999988 79


Q ss_pred             eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          962 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       962 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .|.+||+.+++.+..+..   ...+.+++|+|||++|++++.|+.|++||+.+++.+..+.
T Consensus       261 ~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          261 VLESFDLEKNASIKRVPL---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             EEEEEETTTTEEEEEEEC---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCcCcceecC---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            999999999998877653   3468899999999999999999999999999999998887

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=9.4e-20  Score=204.63  Aligned_cols=273  Identities=11%  Similarity=0.102  Sum_probs=205.6

Q ss_pred             ccceEEEEEccCCceEEEeec-------CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeE
Q 001311          739 ATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPC  811 (1102)
Q Consensus       739 ~~~i~~~~~s~~g~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~  811 (1102)
                      ...+..++|+|+|+++++++.       ++.|.+||.                      .+++......    ....+..
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~----------------------~~~~~~~~~~----~~~~~~~   93 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDP----------------------VTLEVTQAIH----NDLKPFG   93 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECT----------------------TTCCEEEEEE----ESSCCCS
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcC----------------------CCCeEEEEEe----cCCCcce
Confidence            456789999999998887774       457777765                      3333222111    2234678


Q ss_pred             EEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCC---------eeEEEEecCCCcEEEEEe--CCCcEEEEEee
Q 001311          812 FALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPA---------ATFLAFHPQDNNIIAIGM--DDSSIQIYNVR  878 (1102)
Q Consensus       812 l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~---------i~~l~~sp~d~~~lasg~--~dg~v~vwd~~  878 (1102)
                      +++++++++++++.  ++.|.+||..+++.+..+..+...         +.+++|+| +++++++++  .++.|++||..
T Consensus        94 ~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~  172 (353)
T 3vgz_A           94 ATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGG  172 (353)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETT
T ss_pred             EEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCC
Confidence            99999999766665  689999999999988887655432         78899999 777776665  47899999999


Q ss_pred             cceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311          879 VDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  958 (1102)
Q Consensus       879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  958 (1102)
                      +++.+..+..+...+.+++|+||+++|++++.++.|.+||+.+++.....  ..  +.......+..++|+|+|++++++
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~--~~--~~~~~~~~~~~~~~s~dg~~l~~~  248 (353)
T 3vgz_A          173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRK--KL--LDDGKEHFFINISLDTARQRAFIT  248 (353)
T ss_dssp             TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEE--EC--CCSSSCCCEEEEEEETTTTEEEEE
T ss_pred             CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEE--Ec--CCCCCCcccceEEECCCCCEEEEE
Confidence            99988888766667899999999999999999999999999987653322  11  111111356789999999988774


Q ss_pred             --eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCc
Q 001311          959 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1035 (1102)
Q Consensus       959 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1035 (1102)
                        .++.|.+||..+++.+..+...    ....++|+|||+++++++ .++.|.+||..+++.+..+.    .+       
T Consensus       249 ~~~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~----~~-------  313 (353)
T 3vgz_A          249 DSKAAEVLVVDTRNGNILAKVAAP----ESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFD----TP-------  313 (353)
T ss_dssp             ESSSSEEEEEETTTCCEEEEEECS----SCCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEE----CC-------
T ss_pred             eCCCCEEEEEECCCCcEEEEEEcC----CCceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEe----cC-------
Confidence              4589999999999988877642    236799999999766555 68999999999999988776    11       


Q ss_pred             ccceEEEecCCCCCEEEEEecCC
Q 001311         1036 VHPLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus      1036 v~~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
                      ..+..++|+| |+++|+++..++
T Consensus       314 ~~~~~~~~s~-dg~~l~v~~~~~  335 (353)
T 3vgz_A          314 THPNSLALSA-DGKTLYVSVKQK  335 (353)
T ss_dssp             SEEEEEEECT-TSCEEEEEEECC
T ss_pred             CCCCeEEEcC-CCCEEEEEEccc
Confidence            1244899999 577666665553

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.87  E-value=1.2e-19  Score=203.79  Aligned_cols=250  Identities=11%  Similarity=0.077  Sum_probs=183.6

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEec------CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTN------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~------d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      ......+..++|+|+|++++++...      ++.|.+||..+++.+....                    ....+.+++|
T Consensus        37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~   96 (353)
T 3vgz_A           37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATI   96 (353)
T ss_dssp             EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEE
T ss_pred             hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEE
Confidence            3455678999999999986555533      6799999999998776411                    1234778999


Q ss_pred             ccCCCeEEEE-ECCCeEEEEEccCCceeeeEEEeecccc---------CEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311          417 SPDGSLFGVA-YSRHIVQIYSYHGGDEVRQHLEIDAHVG---------GVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  486 (1102)
Q Consensus       417 spdg~~las~-~~d~~v~vwd~~~~~~~~~~~~l~~h~~---------~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~  486 (1102)
                      +|||++++++ ..++.|.+||..+++.+..   +..+..         .+.+++|+|+++.+++...+.++.|.+||+.+
T Consensus        97 s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~  173 (353)
T 3vgz_A           97 NNTTQTLWFGNTVNSAVTAIDAKTGEVKGR---LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGN  173 (353)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTTCCEEEE---EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTT
T ss_pred             CCCCCEEEEEecCCCEEEEEeCCCCeeEEE---EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCC
Confidence            9999966655 5579999999999886553   333322         27899999999953222224688999999999


Q ss_pred             CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311          487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                      ++.+..+..+...+.+++|  +++++++++++.++.|.+||..+.+....+.....          +       ....+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~--s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~----------~-------~~~~~~  234 (353)
T 3vgz_A          174 IKLKTAIQNTGKMSTGLAL--DSEGKRLYTTNADGELITIDTADNKILSRKKLLDD----------G-------KEHFFI  234 (353)
T ss_dssp             TEEEEEECCCCTTCCCCEE--ETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCS----------S-------SCCCEE
T ss_pred             CceEEEecCCCCccceEEE--CCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC----------C-------CCcccc
Confidence            9999988766666777777  45668899999999999999987665544332110          0       011344


Q ss_pred             EEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCC
Q 001311          567 VVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  638 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  638 (1102)
                      .++++|+++++++++ .++.|.+||+.+++.+..+....    ...++|+|++++++++. .++.|.+||..++
T Consensus       235 ~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~  304 (353)
T 3vgz_A          235 NISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY  304 (353)
T ss_dssp             EEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTTEEEEEETTTT
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCCeEEEEECCCC
Confidence            456666666666655 45999999999999888887532    25699999999777666 6899999998776

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=1.7e-20  Score=209.19  Aligned_cols=271  Identities=13%  Similarity=0.078  Sum_probs=200.3

Q ss_pred             ceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC-CeeEEEEecCCCeEEEEe--CCe
Q 001311          752 NAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE-AVPCFALSKNDSYVMSAS--GGK  828 (1102)
Q Consensus       752 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~i~~l~~s~d~~~las~s--dg~  828 (1102)
                      .++++++.++.|.+||+.                      +++.......+  +.. .+..++|+||+++++++.  ++.
T Consensus         2 ~~~v~~~~~~~v~~~d~~----------------------~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~v~~~~~~~   57 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTE----------------------KMAVDKVITIA--DAGPTPMVPMVAPGGRIAYATVNKSES   57 (337)
T ss_dssp             EEEEEEETTTEEEEEETT----------------------TTEEEEEEECT--TCTTCCCCEEECTTSSEEEEEETTTTE
T ss_pred             cEEEEcCCCCeEEEEECC----------------------CCcEEEEEEcC--CCCCCccceEEcCCCCEEEEEeCCCCe
Confidence            357888889999999863                      22222211101  111 478899999998776554  689


Q ss_pred             EEEEEcCCCceeeeecCCC-----CCeeEEEEecCCCcEEEEEe------------CCCcEEEEEeecceeeeeeccccc
Q 001311          829 ISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNIIAIGM------------DDSSIQIYNVRVDEVKSKLKGHSK  891 (1102)
Q Consensus       829 I~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~lasg~------------~dg~v~vwd~~~~~~~~~l~~h~~  891 (1102)
                      |.+||+.+++.+..+....     ..+..++|+| ++++|+++.            .++.|++||+.+++.+..+.. ..
T Consensus        58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~  135 (337)
T 1pby_B           58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSP-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PR  135 (337)
T ss_dssp             EEEEETTTCCEEEEEECCBTTEEEECTTCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CS
T ss_pred             EEEEECCCCCeEeeEEcCCcccccccccceEECC-CCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CC
Confidence            9999999998887765321     2578899999 888888886            579999999999888777764 45


Q ss_pred             cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCC--------
Q 001311          892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HET--------  961 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~--------  961 (1102)
                      .+.+++|+||+++|+++  ++.|.+||+.+++....  +  ..+..     ...+.|+|||+++++.  .++        
T Consensus       136 ~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~--~--~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~  204 (337)
T 1pby_B          136 QITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVED--K--PIQSW-----EAETYAQPDVLAVWNQHESSGVMATPFYT  204 (337)
T ss_dssp             SCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEE--E--CSTTT-----TTTTBCCCBCCCCCCCCTTTTEEEEEEEE
T ss_pred             CcceeEECCCCCEEEEe--CCeEEEEECCCCcEeee--e--ecccc-----CCCceeCCCccEEeeeccCCCceeeeeec
Confidence            68899999999988888  68899999998764221  1  11110     1223789999877653  222        


Q ss_pred             ---------------eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcc
Q 001311          962 ---------------QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1026 (1102)
Q Consensus       962 ---------------~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~ 1026 (1102)
                                     .|.+||+.+++.. .+....+...+.+++|+|||++|+++  ++.|++||+.+++.+..+.    
T Consensus       205 ~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----  277 (337)
T 1pby_B          205 ARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVP----  277 (337)
T ss_dssp             EBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEE----
T ss_pred             cccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceec----
Confidence                           4789999998876 44434566788999999999999988  7999999999999887776    


Q ss_pred             cCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCccccc
Q 001311         1027 LPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus      1027 ~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1074 (1102)
                      .+.       .+.+++|+| |+++|++++.|+.|.+||+.+++.....
T Consensus       278 ~~~-------~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          278 LPH-------SYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             CSS-------CCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             CCC-------ceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence            111       133899999 6788888899999999999998844333

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=1.6e-19  Score=202.21  Aligned_cols=246  Identities=11%  Similarity=0.138  Sum_probs=168.7

Q ss_pred             CCCCeeEEEEecCCCeEEEEe---CCeEEEEEcCCCc--eeeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEee
Q 001311          805 PEEAVPCFALSKNDSYVMSAS---GGKISLFNMMTFK--TMATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVR  878 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~--~~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~  878 (1102)
                      +...+..++|+|||+++++..   ++.|++|++.+++  .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence            345677899999999444433   3789999997665  3444455677899999999 888888877 78999999996


Q ss_pred             c-c--eeeeeecc---------ccccceeEEEecCCCEEEEEcCCCcEEEEEcC-CCcccceeeeecCCCCCCCCCCCcE
Q 001311          879 V-D--EVKSKLKG---------HSKRITGLAFSHALNVLVSSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDTR  945 (1102)
Q Consensus       879 ~-~--~~~~~l~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~  945 (1102)
                      . +  +.+..+..         +...+.+++|+|||+++++...++.|.+|++. +++...........+     ..+..
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence            3 2  22333321         12347889999999977777788999999998 443322221222222     24578


Q ss_pred             EEEccCCcEEEEE--eCCeEEEEEcCC--ceEee--eeccCCC----CCCeeEEEEcCCCcEE-EEEeCCCeEEEEEcCC
Q 001311          946 VQFHQDQIHFLVV--HETQLAIFETTK--LECVK--QWVPRES----SAPITHATFSCDSQLV-YACFLDATVCVFSAAN 1014 (1102)
Q Consensus       946 ~~~spdg~~l~~~--~d~~i~iwd~~~--~~~~~--~~~~~~h----~~~v~~l~~spd~~~l-~s~s~Dg~I~vwd~~~ 1014 (1102)
                      ++|+|||++++++  .++.|.+|++..  ++...  .+.....    ...+..++|+|||++| ++...++.|.+|++..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            9999999987774  578999999874  54322  2221111    1458899999999987 4555689999999973


Q ss_pred             -c--eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec-CCcEEEEeccC
Q 001311         1015 -L--KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS-DGGVHVFEPLE 1067 (1102)
Q Consensus      1015 -~--~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~-Dg~v~vW~~~~ 1067 (1102)
                       +  +.+..+..     .+     ..+..++|+| |+++|++++. ++.|.+|++..
T Consensus       272 ~g~~~~~~~~~~-----~~-----~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          272 DGHLTLIQQIST-----EG-----DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             GGCEEEEEEEEC-----SS-----SCCCEEEECT-TSSEEEEEETTTTEEEEEEECT
T ss_pred             CCcEEEeEEEec-----CC-----CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeC
Confidence             2  34443331     01     2244899999 6787777765 48999996543

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=1.2e-19  Score=197.93  Aligned_cols=233  Identities=13%  Similarity=0.033  Sum_probs=171.9

Q ss_pred             CCCCeeEEEEecCCCeEEEEeCCeEEEEEcCC-CceeeeecCCC-CCeeEEEEecCCCcEEEEEe--CCCcEEEEEee--
Q 001311          805 PEEAVPCFALSKNDSYVMSASGGKISLFNMMT-FKTMATFMPPP-PAATFLAFHPQDNNIIAIGM--DDSSIQIYNVR--  878 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~-~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~--~dg~v~vwd~~--  878 (1102)
                      |...+.+++|+||+++|++++++.|++||+.+ ++.......+. ..+.+++|+| ++++|++++  .++.+.||.+.  
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~  118 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP-DGALYAISDKVEFGKSAIYLLPST  118 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT-TSSEEEEEECTTTSSCEEEEEETT
T ss_pred             CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECC-CCCEEEEEEeCCCCcceEEEEECC
Confidence            67789999999999999999999999999999 87777666663 6789999999 899999998  44566666654  


Q ss_pred             cceeeeeeccccccceeEEEecCCCEEE-EEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          879 VDEVKSKLKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       879 ~~~~~~~l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      +++ ...+..+. .+..++|+||+++|+ +++.|+.++||+++.....   ... ...+.   ..+..++|+|+|++|++
T Consensus       119 ~~~-~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~---~~~-~~~~~---~~~~~~~~s~dg~~l~~  189 (297)
T 2ojh_A          119 GGT-PRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV---ETR-LTHGE---GRNDGPDYSPDGRWIYF  189 (297)
T ss_dssp             CCC-CEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC---EEE-CCCSS---SCEEEEEECTTSSEEEE
T ss_pred             CCc-eEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCc---ceE-cccCC---CccccceECCCCCEEEE
Confidence            443 44454443 488899999999887 7788999999986532111   111 11121   36789999999998887


Q ss_pred             E--eCCeEEEEEcC-CceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----------CeEEEEEcCCceeEEEeCC
Q 001311          958 V--HETQLAIFETT-KLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----------ATVCVFSAANLKLRCRINP 1023 (1102)
Q Consensus       958 ~--~d~~i~iwd~~-~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----------g~I~vwd~~~~~~~~~~~~ 1023 (1102)
                      +  .++.+++|++. .+.....+.  .|...+.+++|+|||++|++++.+           +.|++||+.+++...... 
T Consensus       190 ~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-  266 (297)
T 2ojh_A          190 NSSRTGQMQIWRVRVDGSSVERIT--DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFD-  266 (297)
T ss_dssp             EECTTSSCEEEEEETTSSCEEECC--CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEE-
T ss_pred             EecCCCCccEEEECCCCCCcEEEe--cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeec-
Confidence            4  47889999876 444444444  567789999999999999988876           569999999887643332 


Q ss_pred             CcccCCCCCCCcccceEEEecCCCCCEEEEEecCC
Q 001311         1024 SAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus      1024 ~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
                         .. +| ...+.  .++|+| |++.|++++.|.
T Consensus       267 ---~~-~~-~~~~~--~~~~sp-dg~~l~~~~~~~  293 (297)
T 2ojh_A          267 ---LF-GG-QGTMN--SPNWSP-DGDEFAYVRYFP  293 (297)
T ss_dssp             ---EE-ES-TTTSC--SCCBCT-TSSEEEEEEECC
T ss_pred             ---cC-CC-Ccccc--cceECC-CCCEEEEEEecc
Confidence               11 11 11244  689999 578887777664

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=2.7e-19  Score=195.05  Aligned_cols=243  Identities=14%  Similarity=0.111  Sum_probs=171.9

Q ss_pred             CccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCC-CeeEEeeeeeeeccCCCCccccccccCCC-CCCeEE
Q 001311          336 PKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS-RERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNR  413 (1102)
Q Consensus       336 ~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~  413 (1102)
                      ......+..|...|.+++|+|||++ |++++ ++.|.+||+.+ ++...                   +..+| ...|.+
T Consensus        31 ~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~   89 (297)
T 2ojh_A           31 TRKMRVVWQTPELFEAPNWSPDGKY-LLLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNND   89 (297)
T ss_dssp             TTEEEEEEEESSCCEEEEECTTSSE-EEEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSC
T ss_pred             CCceeeeccCCcceEeeEECCCCCE-EEEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccc
Confidence            3445566779999999999999997 66665 78999999998 76554                   23344 478999


Q ss_pred             EEEccCCCeEEEEE--CCCeEEEEEc--cCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC-CCe
Q 001311          414 VIWSPDGSLFGVAY--SRHIVQIYSY--HGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT-NGA  488 (1102)
Q Consensus       414 l~~spdg~~las~~--~d~~v~vwd~--~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~-~~~  488 (1102)
                      ++|+|||++|++++  .++.+.||.+  .++.. .   .+..+ ..+.+++|+||++. ++++++.|+.++||++. .+.
T Consensus        90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~  163 (297)
T 2ojh_A           90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-R---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG  163 (297)
T ss_dssp             CEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-E---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred             eEECCCCCEEEEEEeCCCCcceEEEEECCCCce-E---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence            99999999999998  4455666655  44432 2   24333 35899999999995 34478889999999964 234


Q ss_pred             eeEEeecCCCCeEEEeeeecCCccEEEEEe-CCCeEEEEEcC-CCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311          489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                      ....+..|...+.+++|+  +++.+|+.++ .++.+++|+++ .......+..+...+.                     
T Consensus       164 ~~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---------------------  220 (297)
T 2ojh_A          164 VETRLTHGEGRNDGPDYS--PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDW---------------------  220 (297)
T ss_dssp             CEEECCCSSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEE---------------------
T ss_pred             cceEcccCCCccccceEC--CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccC---------------------
Confidence            456677788889999885  5567666655 58999999987 3344444444333344                     


Q ss_pred             EEEEcCCCCEEEEEeCC-----------CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCC
Q 001311          567 VVQFDTTKNRFLAAGDD-----------FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDN  628 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg  628 (1102)
                      .+.|+|++++|++++.+           +.|++||+.+++.........+...+.+++|+|++++|++++.+.
T Consensus       221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            44555555677776654           579999999887644433222234688899999999998887653

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=3.2e-18  Score=196.16  Aligned_cols=315  Identities=14%  Similarity=0.149  Sum_probs=199.9

Q ss_pred             ccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311          739 ATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  818 (1102)
Q Consensus       739 ~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~  818 (1102)
                      ...+..+++++++..+++++.++ +++|+..........   ......+........       ..+...|.+++|+|++
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~v~~l~~spdg  104 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKP---GDDPNKIVDKVQGLL-------VPMKFPIHHLALSCDN  104 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCT---TCCTTCEEECCCCEE-------ECCSSCEEEEEECTTS
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhccc---ccCcccccccCcccc-------ccCCCcccEEEEcCCC
Confidence            34678899999999999988887 888876332110000   000000000000000       1256789999999999


Q ss_pred             CeEE----EEe-CCeEEEEEcCCC--------c---eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311          819 SYVM----SAS-GGKISLFNMMTF--------K---TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  882 (1102)
Q Consensus       819 ~~la----s~s-dg~I~iwd~~~~--------~---~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  882 (1102)
                      ++|+    +++ |+.|+|||+.++        +   ....+.+|...|.+++|+|+++.+|++++.||+|++||+.++..
T Consensus       105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~  184 (434)
T 2oit_A          105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK  184 (434)
T ss_dssp             CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred             CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence            9999    666 899999998764        1   14556779999999999995489999999999999999999877


Q ss_pred             eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCC-CCCCCCCCcEEEEccCCcEEEEE--e
Q 001311          883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG-RTPTAQSDTRVQFHQDQIHFLVV--H  959 (1102)
Q Consensus       883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~--~  959 (1102)
                      .....+|...|++++|+|+|++|++|+.||+|++||++ ++...  .+..... .......+.+++|++++.++++.  .
T Consensus       185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~--~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~  261 (434)
T 2oit_A          185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKK--VIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA  261 (434)
T ss_dssp             EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEE--EECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred             eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Ccccc--cccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence            77777899999999999999999999999999999998 33211  1111111 00111368999999999998773  4


Q ss_pred             CC------eEEEEEcCCce-----Eeeeecc-----CCCCCCeeEEEEcCCCcEEEEEeC-CCeEEEEEcCCce--e-EE
Q 001311          960 ET------QLAIFETTKLE-----CVKQWVP-----RESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLK--L-RC 1019 (1102)
Q Consensus       960 d~------~i~iwd~~~~~-----~~~~~~~-----~~h~~~v~~l~~spd~~~l~s~s~-Dg~I~vwd~~~~~--~-~~ 1019 (1102)
                      +|      .+++|++.+.+     ....+..     .+...+-..+.+-+|.+++++++. .+.|.|.......  . ..
T Consensus       262 dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~  341 (434)
T 2oit_A          262 DGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESW  341 (434)
T ss_dssp             TCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred             CCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence            43      38999997642     1111110     011223333444478787766664 3446666543211  1 01


Q ss_pred             EeC--CCcccCCCCCCCcccceEEEec--CCC------------CCEEEEEecCCcEEEEeccC
Q 001311         1020 RIN--PSAYLPAGVSSSNVHPLVIAAH--PQE------------PNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1020 ~~~--~~~~~~~gh~~~~v~~~~v~f~--p~d------------~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      .+.  ....+|-.......+|+++++.  ..+            --.|.+-+.||.+..|.+-.
T Consensus       342 ~~~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~  405 (434)
T 2oit_A          342 LLEDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN  405 (434)
T ss_dssp             EECGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred             eccccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence            110  0111222112233455555442  111            13577888999999999866

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=5.6e-19  Score=218.90  Aligned_cols=285  Identities=10%  Similarity=0.045  Sum_probs=189.1

Q ss_pred             eEEEEEccCCceEEEeec---------CceEEeeeccccccCCCCcccccccceeccCCCccccc-cccCCCCCCCCeeE
Q 001311          742 ISRLIFTNSGNAILALAS---------NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMT-NDVTDSNPEEAVPC  811 (1102)
Q Consensus       742 i~~~~~s~~g~~l~~~~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~i~~  811 (1102)
                      +.+++|||||++|+.++.         ++.|++||+.                      ++..+. ..     ....+..
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~----------------------~g~~~~~~~-----l~~~~~~  114 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS----------------------NGEFVRGNE-----LPRPIQY  114 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT----------------------TTEECCSSC-----CCSSBCC
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC----------------------CCcccccee-----cCccccc
Confidence            678999999999998876         5778877763                      333310 00     1245788


Q ss_pred             EEEecCCCeEEEEeCCeEEEEEcCCCceeeee-cCCCCCe-----------------eEEEEecCCCcEEEEEeCCC---
Q 001311          812 FALSKNDSYVMSASGGKISLFNMMTFKTMATF-MPPPPAA-----------------TFLAFHPQDNNIIAIGMDDS---  870 (1102)
Q Consensus       812 l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~-~~~~~~i-----------------~~l~~sp~d~~~lasg~~dg---  870 (1102)
                      ++|||||+.||.+.++.|++|++.+++..+.. .++...|                 .+++||| ||++||+++.|.   
T Consensus       115 ~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP-DG~~la~~~~d~~~~  193 (719)
T 1z68_A          115 LCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSP-NGKFLAYAEFNDTDI  193 (719)
T ss_dssp             EEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECT-TSSEEEEEEEECTTS
T ss_pred             ceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECC-CCCEEEEEEECCCCC
Confidence            99999999999999999999999887765433 2222222                 5899999 999999987652   


Q ss_pred             -------------------------------cEEEEEeecceee--------eeeccccccceeEEEecCCCEEEEEcCC
Q 001311          871 -------------------------------SIQIYNVRVDEVK--------SKLKGHSKRITGLAFSHALNVLVSSGAD  911 (1102)
Q Consensus       871 -------------------------------~v~vwd~~~~~~~--------~~l~~h~~~V~~l~~s~d~~~l~s~s~D  911 (1102)
                                                     .|++||+.+++..        ..+.+|...+.+++||||++++++....
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~  273 (719)
T 1z68_A          194 PVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKR  273 (719)
T ss_dssp             CEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEES
T ss_pred             ceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecc
Confidence                                           7889999887653        2245688899999999998877774432


Q ss_pred             ----CcEEEEE----cCCCcccceeeeecCCCCCCCCCCCc-----EEEEccCCcEEEE--E-eCC--eEEEEEcCCceE
Q 001311          912 ----SQLCVWS----SDGWEKQKNRFLQIPTGRTPTAQSDT-----RVQFHQDQIHFLV--V-HET--QLAIFETTKLEC  973 (1102)
Q Consensus       912 ----g~i~vwd----~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~spdg~~l~~--~-~d~--~i~iwd~~~~~~  973 (1102)
                          ..|.+||    +.+++...... ....++.   ..+.     .++|+|||+.++.  + .++  .|.+||+.+++.
T Consensus       274 ~~~~~~l~~~d~~~~~~~g~~~~~~~-~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~  349 (719)
T 1z68_A          274 VQNVSVLSICDFREDWQTWDCPKTQE-HIEESRT---GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA  349 (719)
T ss_dssp             STTEEEEEEEEECSSSSSEECCGGGE-EEEECSS---SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC
T ss_pred             ccCeEEEEEEcccCCCCCCceEEEEe-cccccCC---ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce
Confidence                2488899    77655322110 0001222   2344     7899999997665  3 333  688888877763


Q ss_pred             eeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCC--cee-EEEeCCCcccCCCCCCCcccceEEEecC
Q 001311          974 VKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAAN--LKL-RCRINPSAYLPAGVSSSNVHPLVIAAHP 1045 (1102)
Q Consensus       974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~--~~~-~~~~~~~~~~~~gh~~~~v~~~~v~f~p 1045 (1102)
                       ..+.  .+...+..+.++ |++.|+..+.+     +.+++|.++.  +.. ...+..  .+. +| ...+.  .+.|+|
T Consensus       350 -~~lt--~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~--~~~-~~-~~~~~--~~~~s~  419 (719)
T 1z68_A          350 -IQIT--SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC--HLR-KE-RCQYY--TASFSD  419 (719)
T ss_dssp             -EECS--CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST--TTT-TT-TBCBE--EEEECG
T ss_pred             -Eecc--cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC--ccC-CC-CCceE--EEEECC
Confidence             3333  345668888888 88887776665     8889998764  421 222220  011 11 11133  788999


Q ss_pred             CCCCEEE-EEecC--CcEEEEeccCCC
Q 001311         1046 QEPNEFA-LGLSD--GGVHVFEPLESE 1069 (1102)
Q Consensus      1046 ~d~~~l~-s~~~D--g~v~vW~~~~~~ 1069 (1102)
                      + +++++ +++.+  ..+.+||+.+++
T Consensus       420 d-g~~l~~~~s~~~~p~~~l~d~~~g~  445 (719)
T 1z68_A          420 Y-AKYYALVCYGPGIPISTLHDGRTDQ  445 (719)
T ss_dssp             G-GSSEEEEECCBSSCEEEEECSSSCC
T ss_pred             C-CCEEEEEcCCCCCCeEEEEECCCCC
Confidence            5 55554 55544  468899987776

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=1.2e-18  Score=194.98  Aligned_cols=279  Identities=13%  Similarity=0.125  Sum_probs=183.1

Q ss_pred             CCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec---CceEEeeeccccccCCCCcccccccce
Q 001311          710 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS---NAIHLLWKWQRTERNSSGKATASVAPQ  786 (1102)
Q Consensus       710 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~  786 (1102)
                      .++.+.+|.+.....  ....+..  ..+...+..++|+|+|+ +++++.   ++.|.+|++..+..             
T Consensus        14 ~~~~i~v~~~d~~tg--~~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------   75 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAK--TLTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------   75 (347)
T ss_dssp             SCCEEEEEEEETTTT--EEEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------
T ss_pred             CCCCEEEEEEcCCCC--eEEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------
Confidence            456788888764221  1111111  12445677899999999 666654   58999998732211             


Q ss_pred             eccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcC-CCc--eeeeecC---------CCCCeeE
Q 001311          787 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMM-TFK--TMATFMP---------PPPAATF  852 (1102)
Q Consensus       787 ~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~-~~~--~~~~~~~---------~~~~i~~  852 (1102)
                             ..+.. +.  .+...+..++|+|||++|++++  ++.|.+|++. ++.  .+..+..         +...+.+
T Consensus        76 -------~~~~~-~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~  145 (347)
T 3hfq_A           76 -------HKLNT-VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY  145 (347)
T ss_dssp             -------EEEEE-EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred             -------EEeee-ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence                   01110 00  1456688999999999888887  6899999996 222  2333321         1234889


Q ss_pred             EEEecCCCcEEEEEeCCCcEEEEEee-cceeee--eeccc-cccceeEEEecCCCEEEE-EcCCCcEEEEEcCC--Cccc
Q 001311          853 LAFHPQDNNIIAIGMDDSSIQIYNVR-VDEVKS--KLKGH-SKRITGLAFSHALNVLVS-SGADSQLCVWSSDG--WEKQ  925 (1102)
Q Consensus       853 l~~sp~d~~~lasg~~dg~v~vwd~~-~~~~~~--~l~~h-~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~~--~~~~  925 (1102)
                      ++|+| +++++++...++.|++|++. +++...  .+..+ ...+..++|+|||++|++ ...++.|.+|+++.  ++..
T Consensus       146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence            99999 77777777778999999998 454322  22222 235678999999996655 56788999999874  3322


Q ss_pred             ceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-E-eCCeEEEEEcCC-c--eEeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311          926 KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-V-HETQLAIFETTK-L--ECVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus       926 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~-~d~~i~iwd~~~-~--~~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
                      .................+..++|+|||++|++ . .++.|.+|++.. +  +.+..+.  .+...+..++|+|||++|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~--~~~~~~~~~~~spdg~~l~v  302 (347)
T 3hfq_A          225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQIS--TEGDFPRDFDLDPTEAFVVV  302 (347)
T ss_dssp             EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred             EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEe--cCCCCcCeEEECCCCCEEEE
Confidence            22222222221111134678999999998866 3 578999999973 2  4444443  44567899999999999988


Q ss_pred             EeCC-CeEEEE--EcCCceeEE
Q 001311         1001 CFLD-ATVCVF--SAANLKLRC 1019 (1102)
Q Consensus      1001 ~s~D-g~I~vw--d~~~~~~~~ 1019 (1102)
                      ++.+ +.|.+|  |..+|++..
T Consensus       303 ~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          303 VNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EETTTTEEEEEEECTTTCCEEE
T ss_pred             EEcCCCcEEEEEEeCCCCeEEe
Confidence            8765 899999  556776653

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=4.1e-19  Score=220.08  Aligned_cols=335  Identities=11%  Similarity=0.068  Sum_probs=219.7

Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC-CCCcCeEEEcCCCCEEEEEEC---------CCcEEEEEcc
Q 001311          567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG-LPASPRIRFNKDGCLLAVSTN---------DNGIKILATS  636 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~---------dg~i~iwd~~  636 (1102)
                      .+.|+|++. ++..+.|+.|++||+.+++....+..+.. ...+.+++|||||++|++++.         ++.|++||+.
T Consensus        20 ~~~~s~dg~-~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQE-YLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSE-EEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCe-EEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            345666664 55556799999999999988777654321 013789999999999998876         6889999887


Q ss_pred             CCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccce
Q 001311          637 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKV  716 (1102)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~  716 (1102)
                      ++. .+...                                                                       
T Consensus        99 ~g~-~~~~~-----------------------------------------------------------------------  106 (719)
T 1z68_A           99 NGE-FVRGN-----------------------------------------------------------------------  106 (719)
T ss_dssp             TTE-ECCSS-----------------------------------------------------------------------
T ss_pred             CCc-cccce-----------------------------------------------------------------------
Confidence            762 11000                                                                       


Q ss_pred             EecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccc
Q 001311          717 WKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMM  796 (1102)
Q Consensus       717 w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  796 (1102)
                                   .       -...+..++|||||+.|+.+. ++.|++|++..+....           +-  ..+...
T Consensus       107 -------------~-------l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~-----------l~--~~~~~~  152 (719)
T 1z68_A          107 -------------E-------LPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQ-----------IT--FNGREN  152 (719)
T ss_dssp             -------------C-------CCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEE-----------CC--CCCBTT
T ss_pred             -------------e-------cCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEE-----------Ee--cCCCcC
Confidence                         0       012356789999999888875 7789999874322100           00  000000


Q ss_pred             ccccCCCCCC---------CCeeEEEEecCCCeEEEEe-CC----------------------------------eEEEE
Q 001311          797 TNDVTDSNPE---------EAVPCFALSKNDSYVMSAS-GG----------------------------------KISLF  832 (1102)
Q Consensus       797 ~~~~~~~~~~---------~~i~~l~~s~d~~~las~s-dg----------------------------------~I~iw  832 (1102)
                       ....  ++.         ....+++|||||++|++++ |.                                  .|++|
T Consensus       153 -~v~~--g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~  229 (719)
T 1z68_A          153 -KIFN--GIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII  229 (719)
T ss_dssp             -TEEE--SSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             -CeEc--ccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence             0000  011         1235899999999999987 42                                  78899


Q ss_pred             EcCCCcee--------eeecCCCCCeeEEEEecCCCcEEEEEeCCC----cEEEEE----eecceeeeee----cccccc
Q 001311          833 NMMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMDDS----SIQIYN----VRVDEVKSKL----KGHSKR  892 (1102)
Q Consensus       833 d~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg----~v~vwd----~~~~~~~~~l----~~h~~~  892 (1102)
                      |+.+++..        ..+.+|...+..++|+| |++++++....+    .|++||    +.++++...+    .+|...
T Consensus       230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~  308 (719)
T 1z68_A          230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW  308 (719)
T ss_dssp             ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC
T ss_pred             ECCCCCccceeEccCCccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce
Confidence            99987653        22346778899999999 788877754332    488999    7788776666    467777


Q ss_pred             ce-----eEEEecCCCEEEE--EcCCC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeC--
Q 001311          893 IT-----GLAFSHALNVLVS--SGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHE--  960 (1102)
Q Consensus       893 V~-----~l~~s~d~~~l~s--~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d--  960 (1102)
                      +.     .++|+|||+.|+.  ...++  .|.+||+.+++.     .....+ .   ..+..+.++ +++.++. +.+  
T Consensus       309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-----~~lt~~-~---~~v~~~~~~-d~~~i~~~~~~~~  378 (719)
T 1z68_A          309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-----IQITSG-K---WEAINIFRV-TQDSLFYSSNEFE  378 (719)
T ss_dssp             SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-----EECSCS-S---SCEEEEEEE-CSSEEEEEESCGG
T ss_pred             EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-----EecccC-c---eEEEEEEEE-eCCEEEEEEecCC
Confidence            77     8999999996554  54555  466677766542     111111 1   245677777 8887777 443  


Q ss_pred             ---CeEEEEEcCC--ceE-eeeec--cCCCCCCeeEEEEcCCCcEEEEE-eCC--CeEEEEEcCCceeEEEeC
Q 001311          961 ---TQLAIFETTK--LEC-VKQWV--PRESSAPITHATFSCDSQLVYAC-FLD--ATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 ---~~i~iwd~~~--~~~-~~~~~--~~~h~~~v~~l~~spd~~~l~s~-s~D--g~I~vwd~~~~~~~~~~~ 1022 (1102)
                         +..++|.+..  +.. ...+.  ..+|...+..+.|+||+++++.. +.+  ..+++||+.+++.+..+.
T Consensus       379 ~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          379 EYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             GCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence               6788887754  421 12222  12356778899999999987743 333  478999999988765554

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=2.5e-18  Score=197.06  Aligned_cols=266  Identities=13%  Similarity=0.072  Sum_probs=170.3

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE-
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG-  424 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-  424 (1102)
                      ...++.+++++++.+ +++|+.|+ |+||+.........   ...+. .............|...|.+++|+|||++|| 
T Consensus        36 ~~~~n~lavs~~~~~-l~~~~~dg-v~v~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYGL-VFAGGASG-LQIFPTKNLLIQNK---PGDDP-NKIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTTE-EEEEETTE-EEEEEHHHHCCCCC---TTCCT-TCEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCCE-EEEECCCE-EEEEEchHhhhhcc---cccCc-ccccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            456899999999995 77888877 89988642110000   00000 0000000111234677899999999999999 


Q ss_pred             ---EEECCCeEEEEEccCC--------ceeeeEEEeeccccCEEEEEEcCC-CCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311          425 ---VAYSRHIVQIYSYHGG--------DEVRQHLEIDAHVGGVNDIAFSHP-NKQLCVITCGDDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       425 ---s~~~d~~v~vwd~~~~--------~~~~~~~~l~~h~~~V~~v~~s~d-~~~~~l~s~~~d~~i~vWd~~~~~~~~~  492 (1102)
                         +|+.|++|+|||+.++        +.+.....+.+|...|.+++|+|+ +.  +|++++.||+|++||++++..+..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence               7888999999999875        223334567789999999999998 55  799999999999999999988877


Q ss_pred             eecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC
Q 001311          493 FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT  572 (1102)
Q Consensus       493 ~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~  572 (1102)
                      ..+|...|.+++|+  ++|.+|++|+.||.|++||.+ +.....+..+..              +...+...+.++.|++
T Consensus       188 ~~~~~~~v~~v~ws--pdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~--------------~~~~~~~~v~~v~w~~  250 (434)
T 2oit_A          188 TLPSTVAVTSVCWS--PKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF--------------YESDHPVRVLDVLWIG  250 (434)
T ss_dssp             EECGGGCEEEEEEC--TTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT--------------CCTTSCEEEEEEEEEE
T ss_pred             ccCCCCceeEEEEc--CCCCEEEEEcCCCcEEEEccC-CcccccccCCcc--------------cCCCCceeEEEEEEec
Confidence            78899999999995  456899999999999999988 333333332211              0000011334444444


Q ss_pred             CCCEEEE-EeCCC------eEEEEECCCcc-----eEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEEC-CCcEEEEE
Q 001311          573 TKNRFLA-AGDDF------SIKFWDMDSVQ-----LLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTN-DNGIKILA  634 (1102)
Q Consensus       573 ~~~~l~~-~~~dg------~i~iwd~~~~~-----~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd  634 (1102)
                      ++.++++ ...+|      .+++|++...+     ....+...     ........+.+-++.+++++++. .+.|.++.
T Consensus       251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~  330 (434)
T 2oit_A          251 TYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA  330 (434)
T ss_dssp             TTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEE
T ss_pred             CceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEE
Confidence            4444544 33343      38999997652     11222111     11111112333366676666654 45577776


Q ss_pred             cc
Q 001311          635 TS  636 (1102)
Q Consensus       635 ~~  636 (1102)
                      ..
T Consensus       331 ~~  332 (434)
T 2oit_A          331 RQ  332 (434)
T ss_dssp             EC
T ss_pred             ec
Confidence            43

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=4.8e-18  Score=210.25  Aligned_cols=233  Identities=14%  Similarity=0.112  Sum_probs=159.1

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCC-----CeEEEEEccCCC
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGV-----SVNRVIWSPDGS  421 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~l~~spdg~  421 (1102)
                      ....+++|+|||++ ++++  |++|++||+.+++...                   ++.+|..     ....++|||||+
T Consensus        17 ~~~~~~~w~~dg~~-~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~   74 (740)
T 4a5s_A           17 LKLYSLRWISDHEY-LYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQ   74 (740)
T ss_dssp             CCCCCEEECSSSEE-EEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSS
T ss_pred             ccccccEECCCCcE-EEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCC
Confidence            44668999999985 7776  8999999999998654                   2344432     334589999999


Q ss_pred             eEEEEECC---------CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311          422 LFGVAYSR---------HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       422 ~las~~~d---------~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~  492 (1102)
                      +|+.++.+         +.+.+||+.+++...    +..|.+.+...+|||||+.  |+.+ .|+.|++||+.+++..+.
T Consensus        75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~~--la~~-~~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGHK--LAYV-WNNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTTC--EEEE-ETTEEEEESSTTSCCEEC
T ss_pred             EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCCE--EEEE-ECCeEEEEECCCCceEEE
Confidence            99999876         566799999987543    6678889999999999994  6655 468999999998876542


Q ss_pred             -eecCCCCe-----------------EEEeeeecCCccEEEEEeCCCe-EEEEEcCCCCCeeeecCCCCeeeEEEEccCC
Q 001311          493 -FEGHEAPV-----------------YSVCPHHKENIQFIFSTALDGK-IKAWLYDNLGSRVDYEAPGRWCTTMAYSADG  553 (1102)
Q Consensus       493 -~~~h~~~v-----------------~~v~~~~~~~~~~l~s~s~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~  553 (1102)
                       ..++...+                 .++.|  ++||+.|+.++.|.+ +.+|++.......   .+...+..+.+...|
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence             23333333                 23556  677788888876554 8888764322110   122334445554444


Q ss_pred             ceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC---cc--eEEEEcCC----CCCCCcCeEEEcCCCCEEEEE
Q 001311          554 TRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQ--LLTSIDAD----GGLPASPRIRFNKDGCLLAVS  624 (1102)
Q Consensus       554 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~--~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~  624 (1102)
                      .                     .    .....|++||+.+   ++  ....+...    ++...+..++|+|||+.++..
T Consensus       223 ~---------------------~----~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~  277 (740)
T 4a5s_A          223 A---------------------V----NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW  277 (740)
T ss_dssp             S---------------------C----CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred             C---------------------c----CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence            3                     0    1123689999998   73  23333321    123357889999999977765


Q ss_pred             ECC----CcEEEEEccCC
Q 001311          625 TND----NGIKILATSDG  638 (1102)
Q Consensus       625 ~~d----g~i~iwd~~~~  638 (1102)
                      ...    ..|++||+.++
T Consensus       278 ~~r~~~~~~i~~~d~~tg  295 (740)
T 4a5s_A          278 LRRIQNYSVMDICDYDES  295 (740)
T ss_dssp             EESSTTEEEEEEEEEETT
T ss_pred             eCCCCCEEEEEEEECCCC
Confidence            432    36899998877

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=1.8e-18  Score=193.79  Aligned_cols=241  Identities=13%  Similarity=0.080  Sum_probs=181.4

Q ss_pred             EEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeeeec
Q 001311          811 CFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       811 ~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~l~  887 (1102)
                      .++++++++++++++ +++|++||..+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence            345678888888887 8999999999998888876543 2588999999 77755 555678999999999988877665


Q ss_pred             cc------cccceeEEEecCCCEEEEEcCC------------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311          888 GH------SKRITGLAFSHALNVLVSSGAD------------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  949 (1102)
Q Consensus       888 ~h------~~~V~~l~~s~d~~~l~s~s~D------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  949 (1102)
                      .+      ...+.+++|+|||++|++++.+            +.|.+||+.+++.....  ......    ..+.+++|+
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~--~~~~~~----~~~~~~~~s  156 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPV--RTFPMP----RQVYLMRAA  156 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCS--EEEECC----SSCCCEEEC
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccccee--eeccCC----CcccceeEC
Confidence            32      2348899999999999998865            89999999885532211  111111    257889999


Q ss_pred             cCCcEEEEEeCCeEEEEEcCCceEeeeeccCC------------------------------------------------
Q 001311          950 QDQIHFLVVHETQLAIFETTKLECVKQWVPRE------------------------------------------------  981 (1102)
Q Consensus       950 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~------------------------------------------------  981 (1102)
                      |||+ ++++ ++.|.+||+.+++.+..+....                                                
T Consensus       157 ~dg~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  234 (349)
T 1jmx_B          157 DDGS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG  234 (349)
T ss_dssp             TTSC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred             CCCc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence            9999 5554 4459999999988776654321                                                


Q ss_pred             ------------------CCCCeeEEEEcC-CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEE
Q 001311          982 ------------------SSAPITHATFSC-DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA 1042 (1102)
Q Consensus       982 ------------------h~~~v~~l~~sp-d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~ 1042 (1102)
                                        +...+..++|+| |+++|+++  ++.|++||+.+++.+..+.    ....     +.  .++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~-----~~--~~~  301 (349)
T 1jmx_B          235 YLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHT-----YY--CVA  301 (349)
T ss_dssp             EEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSC-----CC--EEE
T ss_pred             EEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCC-----cc--ceE
Confidence                              011456778889 99999888  8999999999999887775    1111     33  799


Q ss_pred             ecCCCCCEEEEEecCCcEEEEeccCCCccccc
Q 001311         1043 AHPQEPNEFALGLSDGGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus      1043 f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~~~ 1074 (1102)
                      |+| |+++|++++.++.|.+||+.+++..-..
T Consensus       302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~  332 (349)
T 1jmx_B          302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI  332 (349)
T ss_dssp             ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred             ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence            999 5777888888999999999988743333

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=6.5e-18  Score=189.18  Aligned_cols=288  Identities=11%  Similarity=0.040  Sum_probs=190.9

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCCccceeeccc
Q 001311          569 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       569 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                      ++++++.++++++.++.|++||+.+++.+..+.... ...+..++|+|++++++++ ..++.|.+||+.++ +....+..
T Consensus         6 ~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~-~~~~~~~~   83 (349)
T 1jmx_B            6 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD-KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL   83 (349)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS-CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred             cccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC-CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC-cEEEEEEc
Confidence            455666788999999999999999999888887543 1136789999999876554 46889999998776 22222110


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311          648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  727 (1102)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~  727 (1102)
                      ....                                                                            
T Consensus        84 ~~~~----------------------------------------------------------------------------   87 (349)
T 1jmx_B           84 SSVP----------------------------------------------------------------------------   87 (349)
T ss_dssp             CCST----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            0000                                                                            


Q ss_pred             cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311          728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  807 (1102)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  807 (1102)
                              ......+..++|+|+|+++++++.+....                                           
T Consensus        88 --------~~~~~~~~~~~~spdg~~l~~~~~~~~~~-------------------------------------------  116 (349)
T 1jmx_B           88 --------GEVGRSMYSFAISPDGKEVYATVNPTQRL-------------------------------------------  116 (349)
T ss_dssp             --------TEEEECSSCEEECTTSSEEEEEEEEEEEC-------------------------------------------
T ss_pred             --------ccccccccceEECCCCCEEEEEccccccc-------------------------------------------
Confidence                    00011234455666666555544331100                                           


Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCce---eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT---MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~---~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                               ...+  ...++.|.+||+.+++.   +..+. +...+.+++|+| +++ +++++  +.|++||+.+++.+.
T Consensus       117 ---------~~~~--~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~  180 (349)
T 1jmx_B          117 ---------NDHY--VVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTV  180 (349)
T ss_dssp             ---------SSCE--EECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEE
T ss_pred             ---------cccc--ccCCCeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceec
Confidence                     0000  00147899999988543   33344 334689999999 788 55554  449999999988777


Q ss_pred             eeccccc------------------------cceeEEEecCCC-----------EEEEEcCCCcEEEEEcCCCcccceee
Q 001311          885 KLKGHSK------------------------RITGLAFSHALN-----------VLVSSGADSQLCVWSSDGWEKQKNRF  929 (1102)
Q Consensus       885 ~l~~h~~------------------------~V~~l~~s~d~~-----------~l~s~s~Dg~i~vwd~~~~~~~~~~~  929 (1102)
                      .+..+..                        ...++++++|+.           ++.....++.+++|++..        
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  252 (349)
T 1jmx_B          181 ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD--------  252 (349)
T ss_dssp             EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE--------
T ss_pred             cccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc--------
Confidence            6653320                        234466665542           122333344555555422        


Q ss_pred             eecCCCCCCCCCCCcEEEEcc-CCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311          930 LQIPTGRTPTAQSDTRVQFHQ-DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus       930 ~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
                          .     ...+..++|+| ||++++++ ++.|.+||+.+++.+..+..   ...+.+++|+|||++|++++.++.|+
T Consensus       253 ----~-----~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~v~  319 (349)
T 1jmx_B          253 ----L-----TELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLA  319 (349)
T ss_dssp             ----C-----SSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEE
T ss_pred             ----C-----CCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC---CCCccceEECCCCCEEEEecCCCeEE
Confidence                0     12568899999 99999988 89999999999998877753   34578999999999998888899999


Q ss_pred             EEEcCCceeEEEeC
Q 001311         1009 VFSAANLKLRCRIN 1022 (1102)
Q Consensus      1009 vwd~~~~~~~~~~~ 1022 (1102)
                      +||+.+++.+..+.
T Consensus       320 v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          320 VFNPDTLEKVKNIK  333 (349)
T ss_dssp             EEETTTTEEEEEEE
T ss_pred             EEeccccceeeeee
Confidence            99999999998887

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=2.1e-18  Score=207.74  Aligned_cols=233  Identities=10%  Similarity=0.047  Sum_probs=167.5

Q ss_pred             CCCeeEEEEecCCCeEEEEEec-CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC-CCeEEEEEccCCCeE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLF  423 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~-d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~l  423 (1102)
                      ...|.+++|+|||++ ||+++. ||++.||++.+++...                    +..|. ..|..++|||| +++
T Consensus        21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l   78 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI   78 (582)
T ss_dssp             HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred             ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence            567999999999997 555554 9999999997665543                    34444 68999999999 788


Q ss_pred             EEEEC---CCeEEEEEccC--CceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC
Q 001311          424 GVAYS---RHIVQIYSYHG--GDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA  498 (1102)
Q Consensus       424 as~~~---d~~v~vwd~~~--~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~  498 (1102)
                      ++++.   +....||.+..  ......   +..+ ..+...+|+||++.+++++++.++. .+||+.+++.......+. 
T Consensus        79 ~~~~~~~g~~~~~l~~~~~~~~g~~~~---l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~-  152 (582)
T 3o4h_A           79 LVRDVSKGAEQHALFKVNTSRPGEEQR---LEAV-KPMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG-  152 (582)
T ss_dssp             EEEECSTTSCCEEEEEEETTSTTCCEE---CTTS-CSBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS-
T ss_pred             EEeccCCCCcceEEEEEeccCCCcccc---ccCC-CCceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC-
Confidence            87775   45567766644  221221   2222 2345678999998756666666554 599999998766555443 


Q ss_pred             CeEEEeeeecCCccEEEEEeCC----CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311          499 PVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  574 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  574 (1102)
                        .+++|+  +||++|++++.|    +.|++||+.+++.. .+..+...+..++|+|||                     
T Consensus       153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG---------------------  206 (582)
T 3o4h_A          153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGM---------------------  206 (582)
T ss_dssp             --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTS---------------------
T ss_pred             --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCC---------------------
Confidence              566764  566899988877    78999998876543 445555555555555555                     


Q ss_pred             CEEEEEeCCC--eEEEEECCCcceEEEEcCCCCCCCcCeEE--------EcCCCCEEEEEECCCcEEEEEc
Q 001311          575 NRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGLPASPRIR--------FNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       575 ~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                      +.|+++..++  .|++||+.+++.. .+..+  ...+..++        |+|||.++++++.+|.+++|++
T Consensus       207 ~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          207 KVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             CEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             CEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            5677777788  8999999998877 55433  23466677        9999999999999999999997

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.81  E-value=1.5e-18  Score=209.20  Aligned_cols=271  Identities=10%  Similarity=0.050  Sum_probs=187.0

Q ss_pred             cccCEEEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCeeeEEeecCC-CCeEEEeeeecCCccEEEEEeC---CCeEEEE
Q 001311          452 HVGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEGHE-APVYSVCPHHKENIQFIFSTAL---DGKIKAW  526 (1102)
Q Consensus       452 h~~~V~~v~~s~d~~~~~l~s~~~-d~~i~vWd~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~s~---dg~i~~w  526 (1102)
                      +..+|.+++|+|||+  .|++++. |++++||++.+++.. .+..|. ..+..+.|+  ++ +++++++.   +...++|
T Consensus        20 ~~~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~s--pd-~~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           20 IAVEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYG--VG-RVILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HHSCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTT--CS-EEEEEEECSTTSCCEEEE
T ss_pred             hccchheeecCCCCC--eEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCC--CC-eEEEEeccCCCCcceEEE
Confidence            356899999999999  6777766 999999998766654 444454 688888886  44 67777765   5556676


Q ss_pred             EcCC--CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC
Q 001311          527 LYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  604 (1102)
Q Consensus       527 d~~~--~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  604 (1102)
                      .++.  ......+.... .+...+|+++|+                    ..+++.+.++.+.+||+.+++.........
T Consensus        94 ~~~~~~~g~~~~l~~~~-~~~~~~~s~dg~--------------------~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~  152 (582)
T 3o4h_A           94 KVNTSRPGEEQRLEAVK-PMRILSGVDTGE--------------------AVVFTGATEDRVALYALDGGGLRELARLPG  152 (582)
T ss_dssp             EEETTSTTCCEECTTSC-SBEEEEEEECSS--------------------CEEEEEECSSCEEEEEEETTEEEEEEEESS
T ss_pred             EEeccCCCccccccCCC-CceeeeeCCCCC--------------------eEEEEecCCCCceEEEccCCcEEEeecCCC
Confidence            6544  33322222211 222445555554                    223444444555699999887665554321


Q ss_pred             CCCCcCeEEEcCCCCEEEEEECC----CcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311          605 GLPASPRIRFNKDGCLLAVSTND----NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  680 (1102)
Q Consensus       605 ~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1102)
                           .+++|+|||++|++++.+    +.|++||+.++. .. .+.                                  
T Consensus       153 -----~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~-~l~----------------------------------  191 (582)
T 3o4h_A          153 -----FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LR-VFD----------------------------------  191 (582)
T ss_dssp             -----CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CE-EEC----------------------------------
T ss_pred             -----ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ce-Eee----------------------------------
Confidence                 789999999999988776    667777765551 10 000                                  


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC
Q 001311          681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN  760 (1102)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d  760 (1102)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (582)
T 3o4h_A          192 --------------------------------------------------------------------------------  191 (582)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CC--eEEEEEcCCC
Q 001311          761 AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--KISLFNMMTF  837 (1102)
Q Consensus       761 g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg--~I~iwd~~~~  837 (1102)
                                                                 .+...+..++|||||++|+++. ++  .|++||+.++
T Consensus       192 -------------------------------------------~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~  228 (582)
T 3o4h_A          192 -------------------------------------------SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG  228 (582)
T ss_dssp             -------------------------------------------CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred             -------------------------------------------cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence                                                       0333456677777777777555 56  7888998888


Q ss_pred             ceeeeecCCCCCeeEEE--------EecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEc
Q 001311          838 KTMATFMPPPPAATFLA--------FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG  909 (1102)
Q Consensus       838 ~~~~~~~~~~~~i~~l~--------~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s  909 (1102)
                      +.. .+.+|...+..++        |+| ||.++++++.||.+++|++  ++...   .+.+.|.+++|+ |++++++++
T Consensus       229 ~~~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s-dg~~l~~~s  300 (582)
T 3o4h_A          229 SVE-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW-RGKLVTSHT  300 (582)
T ss_dssp             CEE-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE-TTEEEEEEE
T ss_pred             cEE-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec-CCEEEEEEc
Confidence            777 7777777777777        999 7799999999999999999  66554   234678899999 999999888


Q ss_pred             CCCc---EEEEEcCC
Q 001311          910 ADSQ---LCVWSSDG  921 (1102)
Q Consensus       910 ~Dg~---i~vwd~~~  921 (1102)
                      .+.+   +.+||..+
T Consensus       301 ~~~~p~~l~~~d~~~  315 (582)
T 3o4h_A          301 SLSTPPRIVSLPSGE  315 (582)
T ss_dssp             ETTEEEEEEEETTCC
T ss_pred             CCCCCCeEEEEcCCC
Confidence            7754   66666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.81  E-value=5.7e-17  Score=182.40  Aligned_cols=166  Identities=10%  Similarity=0.059  Sum_probs=116.5

Q ss_pred             CCCeeEEEEecCCCcEEEEEe-CCCcEEEEEeeccee------e-------eeeccccccceeEEEecCCCEEEEEc-CC
Q 001311          847 PPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV------K-------SKLKGHSKRITGLAFSHALNVLVSSG-AD  911 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~------~-------~~l~~h~~~V~~l~~s~d~~~l~s~s-~D  911 (1102)
                      ...+.+++|+| ++++|++++ .++.|++|++.....      +       .....+...+.+++|+|||++|++++ .+
T Consensus       154 ~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~  232 (361)
T 3scy_A          154 MPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIG  232 (361)
T ss_dssp             SCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT
T ss_pred             CCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCC
Confidence            34468899999 888665554 588999999875431      1       11223345578899999999887766 68


Q ss_pred             CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e--CCeEEEEEcC--Cce--EeeeeccCCCCC
Q 001311          912 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--ETQLAIFETT--KLE--CVKQWVPRESSA  984 (1102)
Q Consensus       912 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~--d~~i~iwd~~--~~~--~~~~~~~~~h~~  984 (1102)
                      +.|.+|++.+++......+.....+.   .....++|+|||++|+++ .  ++.|.+|++.  +++  .+..+.  . ..
T Consensus       233 ~~v~v~~~~~g~~~~~~~~~~~~~~~---~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~--~-g~  306 (361)
T 3scy_A          233 GTVIAFRYADGMLDEIQTVAADTVNA---QGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQL--T-GI  306 (361)
T ss_dssp             CEEEEEEEETTEEEEEEEEESCSSCC---CCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEE--C-SS
T ss_pred             CeEEEEEecCCceEEeEEEecCCCCC---CCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEec--C-CC
Confidence            99999999876543322232222221   245799999999999774 3  4799999995  455  333333  2 45


Q ss_pred             CeeEEEEcCCCcEEEEEe-CCCeEEEEEc--CCceeEE
Q 001311          985 PITHATFSCDSQLVYACF-LDATVCVFSA--ANLKLRC 1019 (1102)
Q Consensus       985 ~v~~l~~spd~~~l~s~s-~Dg~I~vwd~--~~~~~~~ 1019 (1102)
                      .+.+++|+|||++|++++ .++.|.+|++  .++++..
T Consensus       307 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~  344 (361)
T 3scy_A          307 HPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD  344 (361)
T ss_dssp             CCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             CCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence            788999999999998887 6789999654  5776654

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.81  E-value=5.5e-17  Score=200.77  Aligned_cols=342  Identities=10%  Similarity=0.037  Sum_probs=213.7

Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCC-CCc--CeEEEcCCCCEEEEEECC---------CcEEE
Q 001311          565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL-PAS--PRIRFNKDGCLLAVSTND---------NGIKI  632 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~~~~s~~~~~l~~~~~d---------g~i~i  632 (1102)
                      ...+.|+|++.+++++  |+.|++||+.+++....+..+... ..+  ..++|||||++|+.++.+         +.+.+
T Consensus        19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            3356677777677775  999999999999988777765421 112  347899999999998876         44567


Q ss_pred             EEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCC
Q 001311          633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESND  712 (1102)
Q Consensus       633 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  712 (1102)
                      ||+.++. ... +                                                                   
T Consensus        97 ~d~~~~~-~~~-l-------------------------------------------------------------------  107 (740)
T 4a5s_A           97 YDLNKRQ-LIT-E-------------------------------------------------------------------  107 (740)
T ss_dssp             EETTTTE-ECC-S-------------------------------------------------------------------
T ss_pred             EECCCCc-EEE-c-------------------------------------------------------------------
Confidence            7776651 110 1                                                                   


Q ss_pred             ccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccC---CCCcccccccceecc
Q 001311          713 KSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN---SSGKATASVAPQLWQ  789 (1102)
Q Consensus       713 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~~~~~w~  789 (1102)
                                             ..+...+...+|||||+.|+.+ .++.|++|++..+...   .++...     .+++
T Consensus       108 -----------------------~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~-----~~~~  158 (740)
T 4a5s_A          108 -----------------------ERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKED-----IIYN  158 (740)
T ss_dssp             -----------------------SCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTT-----TEEE
T ss_pred             -----------------------ccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCcc-----ceec
Confidence                                   1134567899999999988877 5678999887432210   000000     0000


Q ss_pred             CCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-C-C-----------------------------------eEEEE
Q 001311          790 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G-G-----------------------------------KISLF  832 (1102)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-d-g-----------------------------------~I~iw  832 (1102)
                      -....+...+     .-.....+.|||||++||.++ | +                                   +|++|
T Consensus       159 g~~~~v~~ee-----~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~  233 (740)
T 4a5s_A          159 GITDWVYEEE-----VFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVV  233 (740)
T ss_dssp             SBCCHHHHHH-----TSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred             Ccccccccch-----hcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEE
Confidence            0000000000     002234689999999999875 2 2                                   48889


Q ss_pred             EcCC---Cc--eeeeec------CCCCCeeEEEEecCCCcEEEEEeC----CCcEEEEEeecce----eee--ee--ccc
Q 001311          833 NMMT---FK--TMATFM------PPPPAATFLAFHPQDNNIIAIGMD----DSSIQIYNVRVDE----VKS--KL--KGH  889 (1102)
Q Consensus       833 d~~~---~~--~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~----dg~v~vwd~~~~~----~~~--~l--~~h  889 (1102)
                      |+.+   ++  ....+.      +|...+..++|+| |+++++....    +..|++||+.+++    +..  .+  .+|
T Consensus       234 d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~  312 (740)
T 4a5s_A          234 NTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST  312 (740)
T ss_dssp             ETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS
T ss_pred             ECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC
Confidence            9988   73  223343      3777899999999 8887766543    3479999999987    332  22  456


Q ss_pred             cccce-----eEEEecCCCEEE-EEcC-CC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-Ee
Q 001311          890 SKRIT-----GLAFSHALNVLV-SSGA-DS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VH  959 (1102)
Q Consensus       890 ~~~V~-----~l~~s~d~~~l~-s~s~-Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~  959 (1102)
                      ...|.     .++|+|||+.|+ ..+. +|  .|.+||+.+++.     .++..+.    ..+..+. .+|++.|+. +.
T Consensus       313 ~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~-----~~lT~g~----~~v~~~~-~~d~~~i~f~~~  382 (740)
T 4a5s_A          313 TGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC-----TFITKGT----WEVIGIE-ALTSDYLYYISN  382 (740)
T ss_dssp             SSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC-----EESCCSS----SCEEEEE-EECSSEEEEEES
T ss_pred             CceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce-----EecccCC----EEEEEEE-EEeCCEEEEEEe
Confidence            65555     789999999887 6653 33  588888887543     2233332    1344433 355776666 43


Q ss_pred             C-----C--eEEEEEcCCceEeeeecc--CCCCCCeeEEEEcCCCcEEEEEeCC---CeEEEEEcCCceeEEEeC
Q 001311          960 E-----T--QLAIFETTKLECVKQWVP--RESSAPITHATFSCDSQLVYACFLD---ATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       960 d-----~--~i~iwd~~~~~~~~~~~~--~~h~~~v~~l~~spd~~~l~s~s~D---g~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .     +  .|+..++.++.....+..  .+....+..+.||||+++++.....   ..+.+++..+++.+..+.
T Consensus       383 ~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~  457 (740)
T 4a5s_A          383 EYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (740)
T ss_dssp             CGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             cCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence            2     2  455556655544323332  1234678899999999987755543   468899998887765544

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.80  E-value=5.6e-17  Score=182.47  Aligned_cols=245  Identities=13%  Similarity=0.140  Sum_probs=165.7

Q ss_pred             CCCCeeEEEEecCCCeEEEEe-C----CeEEEEEcCC--Cce--eeeecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEE
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-G----GKISLFNMMT--FKT--MATFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQI  874 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-d----g~I~iwd~~~--~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~v  874 (1102)
                      +...+..++|+|||++|++++ +    +.|.+|++..  ++.  +.....+......+++   ++++|++++ .++.|.+
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~  124 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITV  124 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEE
Confidence            345577899999999999888 4    6899998865  332  3334445556777777   455555554 6889999


Q ss_pred             EEeecceeeeeec------c--------ccccceeEEEecCCCEEEEEc-CCCcEEEEEcCCCcc------cce----ee
Q 001311          875 YNVRVDEVKSKLK------G--------HSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEK------QKN----RF  929 (1102)
Q Consensus       875 wd~~~~~~~~~l~------~--------h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~------~~~----~~  929 (1102)
                      |++.....+..+.      +        +...+.+++|+|||++|++++ .++.|.+|++.....      ...    ..
T Consensus       125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~  204 (361)
T 3scy_A          125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEA  204 (361)
T ss_dssp             EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEE
T ss_pred             EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccc
Confidence            9997543332221      1        122357799999999765554 588999999886432      111    11


Q ss_pred             eecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceEee--eec-cCCCCCCeeEEEEcCCCcEEEEEeCC
Q 001311          930 LQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVK--QWV-PRESSAPITHATFSCDSQLVYACFLD 1004 (1102)
Q Consensus       930 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~~~--~~~-~~~h~~~v~~l~~spd~~~l~s~s~D 1004 (1102)
                      .....+     ..+..++|+|||++++++  .++.|.+|++.+++...  .+. ...+...+..++|+|||++|++++.+
T Consensus       205 ~~~~~~-----~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~  279 (361)
T 3scy_A          205 FKVAPG-----SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRL  279 (361)
T ss_dssp             EECCTT-----CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECS
T ss_pred             eecCCC-----CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCC
Confidence            222222     246789999999988875  47899999998776522  222 12334567899999999998776654


Q ss_pred             --CeEEEEEcC--Ccee--EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEe-cCCcEEEEeccCCC
Q 001311         1005 --ATVCVFSAA--NLKL--RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus      1005 --g~I~vwd~~--~~~~--~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
                        +.|.+|+++  +++.  +..+.      .+     ..+..++|+| |+++|++++ .++.|.+|++....
T Consensus       280 ~~~~i~v~~~~~~~g~~~~~~~~~------~g-----~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~d~~~  339 (361)
T 3scy_A          280 KADGVAIFKVDETNGTLTKVGYQL------TG-----IHPRNFIITP-NGKYLLVACRDTNVIQIFERDQAT  339 (361)
T ss_dssp             SSCEEEEEEECTTTCCEEEEEEEE------CS-----SCCCEEEECT-TSCEEEEEETTTTEEEEEEECTTT
T ss_pred             CCCEEEEEEEcCCCCcEEEeeEec------CC-----CCCceEEECC-CCCEEEEEECCCCCEEEEEEECCC
Confidence              899999996  4553  33333      11     2344899999 678777776 67999997765433

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=1.5e-17  Score=187.15  Aligned_cols=251  Identities=10%  Similarity=0.088  Sum_probs=170.7

Q ss_pred             CCCeeEEEEecCCCeEEEEeCCeEEEEEcC-CCceeeeecC-CCCCeeEEEEecCCCcE--EEEEe-------------C
Q 001311          806 EEAVPCFALSKNDSYVMSASGGKISLFNMM-TFKTMATFMP-PPPAATFLAFHPQDNNI--IAIGM-------------D  868 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~sdg~I~iwd~~-~~~~~~~~~~-~~~~i~~l~~sp~d~~~--lasg~-------------~  868 (1102)
                      ...+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| ++++  ++++.             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence            346789999999999998884499999997 7765443321 112366789999 8884  55553             6


Q ss_pred             CCcEEEEEee-cceeeeeec----cccccceeEEEecCCCEEEEEc-CCCcEEEEEcC-CCcccceeeeecCCCCCCCCC
Q 001311          869 DSSIQIYNVR-VDEVKSKLK----GHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQ  941 (1102)
Q Consensus       869 dg~v~vwd~~-~~~~~~~l~----~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~  941 (1102)
                      +|.+.+|++. +++....+.    .+...+.+++|+|||++|++++ .++.|++|+++ +++......+.... +   ..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~  193 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GD  193 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TC
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CC
Confidence            8999999997 466544443    2456789999999999888765 46789999998 65532211122111 0   12


Q ss_pred             CCcEEEEccCCcEEEEE--eCCeEEEEEcC--CceEee------eecc--CCCCC------CeeEEE-EcCCCcEEEEEe
Q 001311          942 SDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECVK------QWVP--RESSA------PITHAT-FSCDSQLVYACF 1002 (1102)
Q Consensus       942 ~v~~~~~spdg~~l~~~--~d~~i~iwd~~--~~~~~~------~~~~--~~h~~------~v~~l~-~spd~~~l~s~s 1002 (1102)
                      .+..++|+|||++++++  .++.|.+|+++  +++...      .+..  .+|..      .+..++ |+|||++|++++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            57899999999999885  36799999765  565421      1211  12222      588999 999999988776


Q ss_pred             CCC------eEEEEEcC-CceeEEEeCCCcccCCCCCCCcccceEEEecCC--CCCEEEEEecC-CcEEEEeccCC
Q 001311         1003 LDA------TVCVFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSD-GGVHVFEPLES 1068 (1102)
Q Consensus      1003 ~Dg------~I~vwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~--d~~~l~s~~~D-g~v~vW~~~~~ 1068 (1102)
                      .+.      +|.+|+++ ++++.....   ..+ .+ .  ..+..++|+|.  |+++|++++.+ +.|.+|++...
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~---~~~-~~-~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGSIEKQLF---LSP-TP-T--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEE---EEE-CS-S--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCCCCCCeEEEEEECCCCCEEEeee---eee-cC-C--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            432      89999996 676543211   000 00 1  11226889995  57888888765 89999999765

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=4.7e-16  Score=173.75  Aligned_cols=219  Identities=13%  Similarity=0.078  Sum_probs=155.1

Q ss_pred             CeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-cee
Q 001311          808 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEV  882 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~  882 (1102)
                      ....++++|||++|+++.   +++|.+||+.+++.+.+ +.. . ....+.+.|++...+++.+.||.+.+|++.. ++.
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~  186 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKV  186 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSE
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcE
Confidence            356688899999888875   46899999999888777 542 2 2233567784557888889999999999865 554


Q ss_pred             ee------eeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCC------CCCCCCCCCcEEEEcc
Q 001311          883 KS------KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT------GRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       883 ~~------~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~sp  950 (1102)
                      ..      .+..+..++ .+.+++++..++..+.++.|.++|+...............      +..  +.....++|+|
T Consensus       187 ~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--p~g~~~~a~~~  263 (361)
T 2oiz_A          187 ASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWV--PGGYNLVGLHR  263 (361)
T ss_dssp             EEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCE--ECCSSCEEEET
T ss_pred             eeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccc--cCCeeEEEEec
Confidence            41      222223332 3455788888888888999999999765432111111110      000  01233589999


Q ss_pred             CCcEEEEE-e-----------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc--e
Q 001311          951 DQIHFLVV-H-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL--K 1016 (1102)
Q Consensus       951 dg~~l~~~-~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~--~ 1016 (1102)
                      |++++.++ .           .+.|.+||+.+++.+..+..  +.  +.+++|+|||++|++++. ++|.|||..++  +
T Consensus       264 dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~--~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~  338 (361)
T 2oiz_A          264 ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPG--RD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPK  338 (361)
T ss_dssp             TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEEC--TT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCE
T ss_pred             CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEec--CC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcce
Confidence            99888874 3           24899999999999998874  23  999999999999998886 99999999999  9


Q ss_pred             eEEEeCCCcccCCCCCCCcccceEEEecCC
Q 001311         1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQ 1046 (1102)
Q Consensus      1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~ 1046 (1102)
                      .+.++.     ..|     -.|..++++|+
T Consensus       339 ~~~~i~-----~~G-----~~P~~~~~~p~  358 (361)
T 2oiz_A          339 LLRTIE-----GAA-----EASLQVQFHPV  358 (361)
T ss_dssp             EEEEET-----TSC-----SSEEEEEECCC
T ss_pred             eeEEec-----cCC-----CCcEEEEecCC
Confidence            988864     112     33557899984

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.75  E-value=2.2e-16  Score=179.66  Aligned_cols=250  Identities=13%  Similarity=0.014  Sum_probs=160.9

Q ss_pred             eeeccCCCCeeE-----EEEecCCCeEEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE
Q 001311          340 TRTLNQGSSPMS-----MDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN  412 (1102)
Q Consensus       340 ~~~~~h~~~v~~-----v~~spdg~~llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  412 (1102)
                      .++..|......     .+|||||++|+.++..++  .|.+||+.+++...                   +..+|...+.
T Consensus        24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~~   84 (388)
T 3pe7_A           24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNTF   84 (388)
T ss_dssp             EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCSS
T ss_pred             EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCcc
Confidence            333345555555     899999998555554467  48889999887665                   3456666666


Q ss_pred             EEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEE--EcCCCCeeEEEE------------------
Q 001311          413 RVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIA--FSHPNKQLCVIT------------------  472 (1102)
Q Consensus       413 ~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~--~s~d~~~~~l~s------------------  472 (1102)
                      .++|||||++|+.++.++.|++||+.+++....   +..+...+....  +++|++  +++.                  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~---~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~  159 (388)
T 3pe7_A           85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVV---YQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH  159 (388)
T ss_dssp             SCEECTTSSEEEEEETTTEEEEEETTTCCEEEE---EECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred             ceEEcCCCCEEEEEeCCCeEEEEECCCCcceee---eechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence            788999999999999999999999999875432   334555454444  489998  4442                  


Q ss_pred             ----ecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecC-CccEEEEEeCC------CeEEEEEcCCCCCeeeecCCC
Q 001311          473 ----CGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-NIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPG  541 (1102)
Q Consensus       473 ----~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~  541 (1102)
                          .+.+..|.+||+.+++... +..+...+..+.|+  + +|..|+..+.+      ..|.++|....... .+..+.
T Consensus       160 ~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~s--p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~  235 (388)
T 3pe7_A          160 EFYFTKPCCRLMRVDLKTGESTV-ILQENQWLGHPIYR--PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHA  235 (388)
T ss_dssp             HHGGGCCCEEEEEEETTTCCEEE-EEEESSCEEEEEEE--TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCC
T ss_pred             hhhccCCcceEEEEECCCCceEE-eecCCccccccEEC--CCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCC
Confidence                2345789999999987544 44566778888875  5 56777776653      36777777654332 222222


Q ss_pred             --CeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-C-C---CeEEEEECCCcceEEEEcCCC--CC-CCcCe
Q 001311          542 --RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-D-D---FSIKFWDMDSVQLLTSIDADG--GL-PASPR  611 (1102)
Q Consensus       542 --~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~-d---g~i~iwd~~~~~~~~~~~~~~--~~-~~v~~  611 (1102)
                        ..+....|+|||                     +.|+..+ . +   ..|++||+.+++.........  +. .....
T Consensus       236 ~~~~~~~~~~spdg---------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~  294 (388)
T 3pe7_A          236 EGESCTHEFWVPDG---------------------SALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDG  294 (388)
T ss_dssp             TTEEEEEEEECTTS---------------------SCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTS
T ss_pred             CCcccccceECCCC---------------------CEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCC
Confidence              134445555555                     4454433 2 1   249999999887543322111  00 01233


Q ss_pred             EEEcCCCCEEEEE---------ECCCcEEEEEccCC
Q 001311          612 IRFNKDGCLLAVS---------TNDNGIKILATSDG  638 (1102)
Q Consensus       612 ~~~s~~~~~l~~~---------~~dg~i~iwd~~~~  638 (1102)
                      +.|+|||+.|+..         ..+..|++||+.++
T Consensus       295 ~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~  330 (388)
T 3pe7_A          295 SLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG  330 (388)
T ss_dssp             SEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred             CeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence            5899999988864         34568999998776

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.75  E-value=2.4e-16  Score=177.33  Aligned_cols=250  Identities=11%  Similarity=0.027  Sum_probs=168.8

Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccc-ccCCCCCCCCeeEEEEecCCC
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      .+..++|+|+|++|++++.+ .+.+|++..                     +|.+... ....  + ..+.+++++|||+
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~---------------------~g~~~~~~~~~~--~-g~~~~~~~spdg~   95 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKS---------------------PTEIVHEASHPI--G-GHPRANDADTNTR   95 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEE---------------------TTEEEEEEEEEC--C-SSGGGGCTTSCCE
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECC---------------------CCCEEEeeEeec--C-CCCccEEECCCCC
Confidence            56789999999988888877 899998731                     1111100 0000  1 1245688999999


Q ss_pred             e--EEEE--------------eCCeEEEEEcC-CCceeeeec----CCCCCeeEEEEecCCCcEEEEEeC-CCcEEEEEe
Q 001311          820 Y--VMSA--------------SGGKISLFNMM-TFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNV  877 (1102)
Q Consensus       820 ~--las~--------------sdg~I~iwd~~-~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~  877 (1102)
                      +  ++++              .++.+.+|++. +++....+.    .+...+.+++|+| ||++|++++. ++.|++||+
T Consensus        96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~  174 (365)
T 1jof_A           96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRK  174 (365)
T ss_dssp             EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEE
Confidence            4  4444              47889999997 465544433    2456799999999 8888877664 679999999


Q ss_pred             e-cceee--eeec--cccccceeEEEecCCCEEEEEcC-CCcEEEEEcC--CCcccc-eeeeecCCCCCCCCC-------
Q 001311          878 R-VDEVK--SKLK--GHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSD--GWEKQK-NRFLQIPTGRTPTAQ-------  941 (1102)
Q Consensus       878 ~-~~~~~--~~l~--~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~--~~~~~~-~~~~~~~~~~~~~~~-------  941 (1102)
                      . +++..  ..+.  .|...+..++|+|||++|++++. +++|.+|+++  +++... ...+...........       
T Consensus       175 ~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~  254 (365)
T 1jof_A          175 LASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGL  254 (365)
T ss_dssp             CTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBS
T ss_pred             CCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccc
Confidence            8 67643  2333  24566899999999999887764 7899999876  343211 111222211110001       


Q ss_pred             CCcEEE-EccCCcEEEEE--eCC-----eEEEEEcC-CceEeeeec-cCCCCCCeeEEEEcC---CCcEEEEEeCC-CeE
Q 001311          942 SDTRVQ-FHQDQIHFLVV--HET-----QLAIFETT-KLECVKQWV-PRESSAPITHATFSC---DSQLVYACFLD-ATV 1007 (1102)
Q Consensus       942 ~v~~~~-~spdg~~l~~~--~d~-----~i~iwd~~-~~~~~~~~~-~~~h~~~v~~l~~sp---d~~~l~s~s~D-g~I 1007 (1102)
                      .+..++ |+|||++|+++  .++     .|.+|++. +++...... ...+...+..++|+|   ||++|++++.+ +.|
T Consensus       255 ~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v  334 (365)
T 1jof_A          255 YRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL  334 (365)
T ss_dssp             EEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred             ccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence            367899 99999998874  333     89999996 666543211 112345677899999   89999999875 899


Q ss_pred             EEEEcCCce
Q 001311         1008 CVFSAANLK 1016 (1102)
Q Consensus      1008 ~vwd~~~~~ 1016 (1102)
                      .||+++...
T Consensus       335 ~v~~~~~~~  343 (365)
T 1jof_A          335 EIYRWKDEF  343 (365)
T ss_dssp             EEEEEETTE
T ss_pred             EEEEEchhh
Confidence            999998763

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=5.7e-16  Score=176.19  Aligned_cols=207  Identities=9%  Similarity=0.019  Sum_probs=140.4

Q ss_pred             cCCCCCCeEE-----EEEccCCCeEEEEEC-CC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC
Q 001311          404 VKDPGVSVNR-----VIWSPDGSLFGVAYS-RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD  475 (1102)
Q Consensus       404 ~~~h~~~V~~-----l~~spdg~~las~~~-d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~  475 (1102)
                      +..|...+..     .+|||||++||.++. ++  .|.+||+.+++...   ...+|...+..++|+|||+  .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence            5566655555     899999999999987 66  48888998887543   2345655666788999999  6888888


Q ss_pred             CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEE----------------------eCCCeEEEEEcCCCCC
Q 001311          476 DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST----------------------ALDGKIKAWLYDNLGS  533 (1102)
Q Consensus       476 d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~----------------------s~dg~i~~wd~~~~~~  533 (1102)
                      ++.|++||+.+++....+..+...+....|..++++.+++..                      ..+..|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            899999999999988777777766665666557777777643                      2346788999887543


Q ss_pred             eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcC-CCCEEEEEeC------CCeEEEEECCCcceEEEEcCCCCC
Q 001311          534 RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT-TKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGL  606 (1102)
Q Consensus       534 ~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~  606 (1102)
                      . .+..+...+..+                     .|+| +++.|+.+..      ...|.++|...+.. ..+..+...
T Consensus       181 ~-~l~~~~~~~~~~---------------------~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~  237 (388)
T 3pe7_A          181 T-VILQENQWLGHP---------------------IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEG  237 (388)
T ss_dssp             E-EEEEESSCEEEE---------------------EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTT
T ss_pred             E-EeecCCcccccc---------------------EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCC
Confidence            2 222222334444                     4555 4555666554      34788888866554 333322211


Q ss_pred             CCcCeEEEcCCCCEEEEEEC-CC----cEEEEEccCC
Q 001311          607 PASPRIRFNKDGCLLAVSTN-DN----GIKILATSDG  638 (1102)
Q Consensus       607 ~~v~~~~~s~~~~~l~~~~~-dg----~i~iwd~~~~  638 (1102)
                      ..+..++|+|||+.|+..+. ++    .|++||+.++
T Consensus       238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (388)
T 3pe7_A          238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETL  274 (388)
T ss_dssp             EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTC
T ss_pred             cccccceECCCCCEEEEEecCCCCCcceEEEEecCCC
Confidence            24667899999997765443 22    3888887766

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=2.5e-15  Score=167.90  Aligned_cols=229  Identities=9%  Similarity=0.018  Sum_probs=140.0

Q ss_pred             CCCeEEEEE-----ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC---
Q 001311          357 VQQTLLLVG-----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS---  428 (1102)
Q Consensus       357 dg~~llasg-----~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~---  428 (1102)
                      ++++++++.     ..|+.|.+||..+++.+..                   +..+..+  .++|||||++|++++.   
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~~   72 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYHE   72 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEET
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEeccc
Confidence            555545443     2478999999999987653                   2333344  8999999999999863   


Q ss_pred             -------CCeEEEEEccCCceeeeEEEeec---cccCEEEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCeeeEE-eec
Q 001311          429 -------RHIVQIYSYHGGDEVRQHLEIDA---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYI-FEG  495 (1102)
Q Consensus       429 -------d~~v~vwd~~~~~~~~~~~~l~~---h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~vWd~~~~~~~~~-~~~  495 (1102)
                             ++.|.+||..+++.+..+.....   +......++|+|||+.  |+++.  .+++|.+||+.+++.+.. +..
T Consensus        73 ~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~--l~v~n~~~~~~v~v~d~~~~~~~~~~i~~  150 (361)
T 2oiz_A           73 RITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKF--IVLQNASPATSIGIVDVAKGDYVEDVTAA  150 (361)
T ss_dssp             TSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSE--EEEEEESSSEEEEEEETTTTEEEEEEGGG
T ss_pred             ccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCE--EEEECCCCCCeEEEEECCCCcEEEEEecC
Confidence                   67899999998877654432211   2345678999999994  55443  368999999999998888 653


Q ss_pred             CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311          496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  575 (1102)
Q Consensus       496 h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  575 (1102)
                       .+ ...+.+.+.. ...+++.+.||.+.+|++.......... +..    ..|.+...         . ..+.+.+++.
T Consensus       151 -~~-~~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~-~~~----~~~~~~~~---------~-~~~~~~~~g~  212 (361)
T 2oiz_A          151 -AG-CWSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQS-RSK----QMFSVKDD---------P-IFIAPALDKD  212 (361)
T ss_dssp             -TT-EEEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEE-ECC----CCSCTTTS---------C-BCSCCEECSS
T ss_pred             -CC-cceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeec-ccc----ceEcCCCC---------c-eEEEecccCC
Confidence             22 2223333332 2578888999999999986533322100 000    00111110         0 0111234455


Q ss_pred             EEEEEeCCCeEEEEECCCcce--EEEEcCCC--------CCCCcCeEEEcCCCCEEEEEEC
Q 001311          576 RFLAAGDDFSIKFWDMDSVQL--LTSIDADG--------GLPASPRIRFNKDGCLLAVSTN  626 (1102)
Q Consensus       576 ~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~--------~~~~v~~~~~s~~~~~l~~~~~  626 (1102)
                      .++..+.++.|.++|+..+..  +..+....        .......++|+|+++.++++..
T Consensus       213 ~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~  273 (361)
T 2oiz_A          213 KAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH  273 (361)
T ss_dssp             EEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence            667777889999999875542  22221110        0011223788888877776543

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.69  E-value=5.2e-15  Score=163.46  Aligned_cols=251  Identities=14%  Similarity=0.067  Sum_probs=185.0

Q ss_pred             CCCeeEEEEecCCCeEEEEe-C------------------------CeEEEEEcCCCceeeeec-CCCCCeeEEEEecCC
Q 001311          806 EEAVPCFALSKNDSYVMSAS-G------------------------GKISLFNMMTFKTMATFM-PPPPAATFLAFHPQD  859 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s-d------------------------g~I~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d  859 (1102)
                      -..+.+++++++|+++++.. +                        +.|.+||..+++.+..+. ++......+++++ +
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence            45689999999999998887 4                        379999999888876664 4456789999999 8


Q ss_pred             CcEEEEEeCCCcEEEEEeecce-eeeee---------ccccccceeEEEec-CCCEEEEEc-CCCcEEEEEcCCCcccce
Q 001311          860 NNIIAIGMDDSSIQIYNVRVDE-VKSKL---------KGHSKRITGLAFSH-ALNVLVSSG-ADSQLCVWSSDGWEKQKN  927 (1102)
Q Consensus       860 ~~~lasg~~dg~v~vwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~i~vwd~~~~~~~~~  927 (1102)
                      ++++++...++.|++||..... .+..+         .++.....+|+|+| ++.++++.+ .++.|++|+.+. +....
T Consensus       102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g-~~~~~  180 (329)
T 3fvz_A          102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG-KFVTQ  180 (329)
T ss_dssp             SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS-CEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC-CEEEE
Confidence            8888888889999999975432 44444         34455688999999 788888886 689999999543 32111


Q ss_pred             eeeecCCCC---CCCCCCCcEEEEccC-CcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEE--
Q 001311          928 RFLQIPTGR---TPTAQSDTRVQFHQD-QIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA-- 1000 (1102)
Q Consensus       928 ~~~~~~~~~---~~~~~~v~~~~~spd-g~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s-- 1000 (1102)
                      . ...-.+.   .........++++|+ |.++++. .++.|++|+..+++.+..+....+...+.+++|+| +..+++  
T Consensus       181 ~-~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g  258 (329)
T 3fvz_A          181 W-GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNG  258 (329)
T ss_dssp             E-CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEEC
T ss_pred             e-ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCC
Confidence            1 0000000   000123689999999 6665554 77899999999999998887666778899999999 433333  


Q ss_pred             -----EeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311         1001 -----CFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1001 -----~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                           ...+..|++||..+++.+..+...    .+   ..-.|..++++| |+.++++...++.|++|++...
T Consensus       259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~----~~---~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV----RK---HFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CCCTTCSCCCCEEEEETTTCCEEEEECCS----SS---CCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred             CEEeccCCCcEEEEEEcCCCeEEEEEcCC----CC---ccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence                 334558999999999999887511    11   113356899999 5789999999999999998654

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=1.3e-14  Score=160.14  Aligned_cols=250  Identities=12%  Similarity=0.123  Sum_probs=182.8

Q ss_pred             CCCeeEEEEecCCCeEEEEEecC------------------------CeEEEEeCCCCeeEEeeeeeeeccCCCCccccc
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNV------------------------GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQA  401 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d------------------------~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (1102)
                      -+.|.+|+++|+|+ ++++...+                        ++|.+||..+++.+..                 
T Consensus        23 l~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-----------------   84 (329)
T 3fvz_A           23 PGQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS-----------------   84 (329)
T ss_dssp             CSCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE-----------------
T ss_pred             cCCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec-----------------
Confidence            36799999999998 47777766                        4799999988877642                 


Q ss_pred             cccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc-eeeeEEEe---------eccccCEEEEEEcC-CCCeeEE
Q 001311          402 ALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD-EVRQHLEI---------DAHVGGVNDIAFSH-PNKQLCV  470 (1102)
Q Consensus       402 ~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~-~~~~~~~l---------~~h~~~V~~v~~s~-d~~~~~l  470 (1102)
                       .-.++-.....++++|+|+++++...++.|++||..+.. .+.   .+         .++......|+|+| ++.  ++
T Consensus        85 -~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--ly  158 (329)
T 3fvz_A           85 -SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VF  158 (329)
T ss_dssp             -ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EE
T ss_pred             -cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EE
Confidence             123455688999999999999888889999999987642 222   23         24455789999999 676  67


Q ss_pred             EEec-CCCcEEEEeCCCCeeeEEeecC----------CCCeEEEeeeecCC-ccEEEEEeCCCeEEEEEcCCCCCeeeec
Q 001311          471 ITCG-DDKTIKVWDATNGAKQYIFEGH----------EAPVYSVCPHHKEN-IQFIFSTALDGKIKAWLYDNLGSRVDYE  538 (1102)
Q Consensus       471 ~s~~-~d~~i~vWd~~~~~~~~~~~~h----------~~~v~~v~~~~~~~-~~~l~s~s~dg~i~~wd~~~~~~~~~~~  538 (1102)
                      ++.+ .++.|++|| .+|+.+..+...          ......+++.  ++ +.++++...++.|++||..+++....+.
T Consensus       159 v~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d--~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~  235 (329)
T 3fvz_A          159 VSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALV--PHLDQLCVADRENGRIQCFKTDTKEFVREIK  235 (329)
T ss_dssp             EEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEE--TTTTEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEE--CCCCEEEEEECCCCEEEEEECCCCcEEEEEe
Confidence            7775 689999999 778888777432          2347888875  44 5788888889999999998766665553


Q ss_pred             --CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC-CCCCCCcCeEEEc
Q 001311          539 --APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA-DGGLPASPRIRFN  615 (1102)
Q Consensus       539 --~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~~s  615 (1102)
                        .....+..++++| +.              .+..+++.+++...+..|++||..+++.+..+.. ..+.....+++++
T Consensus       236 ~~~~~~~~~~~~~~p-g~--------------~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~  300 (329)
T 3fvz_A          236 HASFGRNVFAISYIP-GF--------------LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVAS  300 (329)
T ss_dssp             CTTTTTCEEEEEEET-TE--------------EEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEEC
T ss_pred             ccccCCCcceeeecC-CE--------------EEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEEC
Confidence              2344556666666 31              1111233344445567999999999999888742 2234457899999


Q ss_pred             CCCCEEEEEECCCcEEEEEccC
Q 001311          616 KDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       616 ~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                      |+|.++++...++.|++|++..
T Consensus       301 ~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          301 EDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             TTSEEEEEESSSCCEEEEEEEE
T ss_pred             CCCCEEEEECCCCEEEEEeCCc
Confidence            9998888888899999999754

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.68  E-value=1.5e-13  Score=160.92  Aligned_cols=332  Identities=12%  Similarity=0.104  Sum_probs=218.1

Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEcc--CCccceeecccccccc
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATS--DGIRLLRTFENLAYDA  652 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~  652 (1102)
                      ..+++...++.|.++|..+++.+..+....   .+..+.|+|||+++++++.++.|.+||+.  ++ +.+..+.      
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-~~v~~i~------  237 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-TTVAEIK------  237 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSC-CEEEEEE------
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCC-cEeEEEe------
Confidence            356667789999999999999998887433   35689999999999999999999999985  43 2222111      


Q ss_pred             cccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcccccc
Q 001311          653 SRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLR  732 (1102)
Q Consensus       653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~  732 (1102)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (567)
T 1qks_A          238 --------------------------------------------------------------------------------  237 (567)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCcccccceEEEEEc----cCCceEEEeecC-ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC-C
Q 001311          733 LPENLRATKISRLIFT----NSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-E  806 (1102)
Q Consensus       733 ~~~~~~~~~i~~~~~s----~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~  806 (1102)
                           .......++|+    |||++++++... +.+.++|..+.+      .+....+.-.....         ...| .
T Consensus       238 -----~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~------~~~~i~~~~~~~~~---------~~~~p~  297 (567)
T 1qks_A          238 -----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE------PKKIQSTRGMTYDE---------QEYHPE  297 (567)
T ss_dssp             -----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC------EEEEEECCEECTTT---------CCEESC
T ss_pred             -----cCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc------EEEEEecccccccc---------ccccCC
Confidence                 01234678999    699988887764 899998853211      11100000000000         0001 2


Q ss_pred             CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEeecce
Q 001311          807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDE  881 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~  881 (1102)
                      ..+..+..++++..++...  .|.|.++|..+.....  .+. .......+.|+| ++++++++. .++.|.++|+.+++
T Consensus       298 ~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~k  375 (567)
T 1qks_A          298 PRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGK  375 (567)
T ss_dssp             CCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTE
T ss_pred             CceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCc
Confidence            2577888999877666554  6999999987654322  222 234566889999 888776655 57899999999998


Q ss_pred             eeeeecc-----ccccceeEEEecCCC-EEEEEc-CCCcEEEEEcCCCccc--ceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311          882 VKSKLKG-----HSKRITGLAFSHALN-VLVSSG-ADSQLCVWSSDGWEKQ--KNRFLQIPTGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       882 ~~~~l~~-----h~~~V~~l~~s~d~~-~l~s~s-~Dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~spdg  952 (1102)
                      ++..+..     |.+.-.. -++|++. ..++.. .+++|.++|..+.+..  ....++......   ..-..+.++|++
T Consensus       376 l~~~i~vgg~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g---~g~~~i~~~p~~  451 (567)
T 1qks_A          376 LVAIEDTGGQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALG---GGSLFIKTHPNS  451 (567)
T ss_dssp             EEEEEECSSSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSC---SCCCCEECCTTC
T ss_pred             EEEEEeccCcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCC---CCCEEEEeCCCC
Confidence            7766543     4322222 2578744 445543 5689999999873210  011222222111   123567899999


Q ss_pred             cEEEEEe--------CCeEEEEEcCCc-----eEe-eeec------cCCCCCCeeEEEEcCCCcEEEEEe-----CCCeE
Q 001311          953 IHFLVVH--------ETQLAIFETTKL-----ECV-KQWV------PRESSAPITHATFSCDSQLVYACF-----LDATV 1007 (1102)
Q Consensus       953 ~~l~~~~--------d~~i~iwd~~~~-----~~~-~~~~------~~~h~~~v~~l~~spd~~~l~s~s-----~Dg~I 1007 (1102)
                      +++.+..        .+.|.++|+.+.     ... ..+.      .......+..+.|++||+++..+.     .++.|
T Consensus       452 ~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i  531 (567)
T 1qks_A          452 QYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESAL  531 (567)
T ss_dssp             SEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEE
T ss_pred             CeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcE
Confidence            9999854        359999999877     211 1221      111246789999999999887663     37999


Q ss_pred             EEEEcCCceeEEEeC
Q 001311         1008 CVFSAANLKLRCRIN 1022 (1102)
Q Consensus      1008 ~vwd~~~~~~~~~~~ 1022 (1102)
                      .|+|..+++++.++.
T Consensus       532 ~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          532 VVVDDKTLELKHVIK  546 (567)
T ss_dssp             EEEETTTTEEEEEEC
T ss_pred             EEEECCCceEEEEeC
Confidence            999999999998887

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=2.2e-14  Score=155.18  Aligned_cols=243  Identities=11%  Similarity=0.115  Sum_probs=177.4

Q ss_pred             CCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeec------CCCCCeeEEEEecCCCcEEEEEeC-CCcEEEEE
Q 001311          805 PEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFM------PPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYN  876 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~------~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd  876 (1102)
                      +-..+.+++++++++++++.. ++.|.+||.. ++.+..+.      ++...+..+++++.+++++++... ++.|++||
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d  106 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN  106 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence            456689999999999888776 8999999987 55655553      234578999995327777776643 88999999


Q ss_pred             eecceeeeeec-cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311          877 VRVDEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  955 (1102)
Q Consensus       877 ~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  955 (1102)
                       .+++.+..+. .+...+.+++++++|+++++...++.|.+||......   ...... ++   ...+..++++++|+++
T Consensus       107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~---~~~~~~-~~---~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL---HKFGCS-KH---LEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE---EEEECT-TT---CSSEEEEEECSSSEEE
T ss_pred             -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE---EEeCCC-Cc---cCCcEEEEECCCCCEE
Confidence             5677666663 3445688999999999888888889999999754211   111111 11   1256899999999977


Q ss_pred             EEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-eEEEEEcCCceeEEEeCCCcccCCCCCC
Q 001311          956 LVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-TVCVFSAANLKLRCRINPSAYLPAGVSS 1033 (1102)
Q Consensus       956 ~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-~I~vwd~~~~~~~~~~~~~~~~~~gh~~ 1033 (1102)
                      ++. .++.|++||.. ++.+..+...++...+..++++++|+++++...++ .|++||. +++.+..+..    ..    
T Consensus       179 v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----~~----  248 (286)
T 1q7f_A          179 ISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----KV----  248 (286)
T ss_dssp             EEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----SS----
T ss_pred             EEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----cC----
Confidence            775 68899999974 55566665444456899999999999888888786 9999995 5666666541    11    


Q ss_pred             CcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311         1034 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1034 ~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                      ....+.+++++| +++++++ +.|++|++|++...
T Consensus       249 ~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          249 KHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             CCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred             CCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence            112355899999 5777776 67999999998653

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.67  E-value=3e-15  Score=170.68  Aligned_cols=294  Identities=10%  Similarity=0.054  Sum_probs=184.4

Q ss_pred             CeEEEEEccCCCeEEEEECC---CeEEEEEccCCceeeeEEEeeccccC-EEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311          410 SVNRVIWSPDGSLFGVAYSR---HIVQIYSYHGGDEVRQHLEIDAHVGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDAT  485 (1102)
Q Consensus       410 ~V~~l~~spdg~~las~~~d---~~v~vwd~~~~~~~~~~~~l~~h~~~-V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~  485 (1102)
                      .+.+++|||||++|+.+..+   ..|.+||+.+++...    +..+... ...+.|+|||+  .|+.++.++.|++||+.
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~  110 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLE  110 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETT
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECC
Confidence            47889999999999887653   478889998886433    3333333 33488999999  68788888899999999


Q ss_pred             CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311          486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  565 (1102)
Q Consensus       486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  565 (1102)
                      +++.......+..      |  .++|..|+..+.++...+|..                 ...++|+++           
T Consensus       111 ~~~~~~~~~~~~~------~--~~~g~~l~~~~~~~~~~~~~~-----------------~~~~spdg~-----------  154 (396)
T 3c5m_A          111 TLEEQVIYTVDEE------W--KGYGTWVANSDCTKLVGIEIL-----------------KRDWQPLTS-----------  154 (396)
T ss_dssp             TCCEEEEEECCTT------E--EEEEEEEECTTSSEEEEEEEE-----------------GGGCCCCCS-----------
T ss_pred             CCCcEEEEecccc------c--CCCCCEEEeccCCcccccccc-----------------ccccCCCCc-----------
Confidence            9887666654443      2  233456666665555555531                 122444444           


Q ss_pred             eEEEEcCCCCEEEEE-----eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCC------cEEEE
Q 001311          566 GVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDN------GIKIL  633 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg------~i~iw  633 (1102)
                                .++..     ..+..|++||+.+++.......   ...+..+.|+| +++.|+..+.++      .|.+|
T Consensus       155 ----------~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~  221 (396)
T 3c5m_A          155 ----------WEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLV  221 (396)
T ss_dssp             ----------HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEE
T ss_pred             ----------ceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEE
Confidence                      33332     3567899999998876655532   23477899999 788777766432      35555


Q ss_pred             EccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCc
Q 001311          634 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDK  713 (1102)
Q Consensus       634 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  713 (1102)
                      +...+ .. ..+                                                                    
T Consensus       222 d~~~~-~~-~~l--------------------------------------------------------------------  231 (396)
T 3c5m_A          222 NEDGS-NV-RKI--------------------------------------------------------------------  231 (396)
T ss_dssp             ETTSC-CC-EES--------------------------------------------------------------------
T ss_pred             ECCCC-ce-eEe--------------------------------------------------------------------
Confidence            54332 10 000                                                                    


Q ss_pred             cceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecC-----ceEEeeeccccccCCCCcccccccceec
Q 001311          714 SKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASN-----AIHLLWKWQRTERNSSGKATASVAPQLW  788 (1102)
Q Consensus       714 i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~~~~~w  788 (1102)
                                        .  .......+..+.|+|+|+.|+..+.+     +.|.+||+                    
T Consensus       232 ------------------~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~--------------------  271 (396)
T 3c5m_A          232 ------------------K--EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANP--------------------  271 (396)
T ss_dssp             ------------------S--CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECT--------------------
T ss_pred             ------------------e--ccCCCccccceEECCCCCEEEEEecCCCCccceEEEEEC--------------------
Confidence                              0  00012356778999999988777654     34777765                    


Q ss_pred             cCCCccccccccCCCCCCCCeeEEEEec-CCCeEEEEe-----------------CCeEEEEEcCCCceeeeecCCCC--
Q 001311          789 QPPSGIMMTNDVTDSNPEEAVPCFALSK-NDSYVMSAS-----------------GGKISLFNMMTFKTMATFMPPPP--  848 (1102)
Q Consensus       789 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~-d~~~las~s-----------------dg~I~iwd~~~~~~~~~~~~~~~--  848 (1102)
                        .++.......    .. ... ++|+| ||++++++.                 +..|++||+.+++.. .+..+..  
T Consensus       272 --~~g~~~~l~~----~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~  342 (396)
T 3c5m_A          272 --ETLENEEVMV----MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTSW  342 (396)
T ss_dssp             --TTCCEEEEEE----CC-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCCC
T ss_pred             --CCCCeEEeee----CC-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCcc
Confidence              3332211100    11 122 88999 999888753                 367999999887653 3443443  


Q ss_pred             ---------CeeEEEEecCCCcEEEEEeC-CCcEEEEEee
Q 001311          849 ---------AATFLAFHPQDNNIIAIGMD-DSSIQIYNVR  878 (1102)
Q Consensus       849 ---------~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~  878 (1102)
                               .+..++|+| |++.|+.++. ++...||.+.
T Consensus       343 ~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          343 DVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEEEEE
T ss_pred             ccccccccCCCCCceEcc-CCCeEEEEecCCCCceEEEEE
Confidence                     256789999 7887776654 5555555443

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.67  E-value=3.2e-13  Score=158.22  Aligned_cols=338  Identities=13%  Similarity=0.085  Sum_probs=214.7

Q ss_pred             cCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcC--CCCCeeeecC
Q 001311          462 SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD--NLGSRVDYEA  539 (1102)
Q Consensus       462 s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~--~~~~~~~~~~  539 (1102)
                      ..|...+++++...+++|.++|..+++.+.++... ..+..+.|  +++|+++++++.|+.|.+||+.  +.+....+..
T Consensus       162 ~~d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~--SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~  238 (567)
T 1qks_A          162 DWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRL--SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI  238 (567)
T ss_dssp             CCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             ccCCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEE--CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec
Confidence            33433337888899999999999999999888743 34567776  5677899999999999999995  5444433332


Q ss_pred             CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCC---------CCCc
Q 001311          540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGG---------LPAS  609 (1102)
Q Consensus       540 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v  609 (1102)
                       +.....++|++-.                 .|+|+++++++ .++.|.++|..+.+.+..+...+.         ...+
T Consensus       239 -G~~P~~ia~s~~~-----------------~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rv  300 (567)
T 1qks_A          239 -GSEARSIETSKME-----------------GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRV  300 (567)
T ss_dssp             -CSEEEEEEECCST-----------------TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCE
T ss_pred             -CCCCceeEEcccc-----------------CCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCce
Confidence             2223344444100                 03555666655 579999999999998887763321         1134


Q ss_pred             CeEEEcCCCCEEEE-EECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccc
Q 001311          610 PRIRFNKDGCLLAV-STNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVS  688 (1102)
Q Consensus       610 ~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  688 (1102)
                      ..+..++++..+++ ...+|.|.++|..+...                                                
T Consensus       301 a~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~------------------------------------------------  332 (567)
T 1qks_A          301 AAILASHYRPEFIVNVKETGKILLVDYTDLNN------------------------------------------------  332 (567)
T ss_dssp             EEEEECSSSSEEEEEETTTTEEEEEETTCSSE------------------------------------------------
T ss_pred             EEEEEcCCCCEEEEEecCCCeEEEEecCCCcc------------------------------------------------
Confidence            45555555443332 22335555555432200                                                


Q ss_pred             cCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeec
Q 001311          689 IPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKW  768 (1102)
Q Consensus       689 ~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~  768 (1102)
                                                                                       +         .+..+
T Consensus       333 -----------------------------------------------------------------~---------~v~~i  338 (567)
T 1qks_A          333 -----------------------------------------------------------------L---------KTTEI  338 (567)
T ss_dssp             -----------------------------------------------------------------E---------EEEEE
T ss_pred             -----------------------------------------------------------------c---------eeeee
Confidence                                                                             0         00000


Q ss_pred             cccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecC-
Q 001311          769 QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMP-  845 (1102)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~-  845 (1102)
                                                         ........+.|+||+++++++.  +++|.++|+.+++.+..+.. 
T Consensus       339 -----------------------------------~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vg  383 (567)
T 1qks_A          339 -----------------------------------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTG  383 (567)
T ss_dssp             -----------------------------------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECS
T ss_pred             -----------------------------------eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEecc
Confidence                                               0122345678889999887776  68899999999887766543 


Q ss_pred             ----CCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEeec-------ceeeeeeccccccceeEEEecCCCEEEEEcC---
Q 001311          846 ----PPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVSSGA---  910 (1102)
Q Consensus       846 ----~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~---  910 (1102)
                          |.+.-.. -++|+++.+++++. .++.|.++|..+       .+.++++......-..|.++||+++|.+...   
T Consensus       384 g~~Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~  462 (567)
T 1qks_A          384 GQTPHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNP  462 (567)
T ss_dssp             SSSBCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCS
T ss_pred             CcCCCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCC
Confidence                3322212 25783355555553 468999999987       6677777655433345789999999988663   


Q ss_pred             ----CCcEEEEEcCCCcc----cceeeeecC--CCCCCCCCCCcEEEEccCCcEEEEE-e-----CCeEEEEEcCCceEe
Q 001311          911 ----DSQLCVWSSDGWEK----QKNRFLQIP--TGRTPTAQSDTRVQFHQDQIHFLVV-H-----ETQLAIFETTKLECV  974 (1102)
Q Consensus       911 ----Dg~i~vwd~~~~~~----~~~~~~~~~--~~~~~~~~~v~~~~~spdg~~l~~~-~-----d~~i~iwd~~~~~~~  974 (1102)
                          ..+|.|+|+.+.+.    .....+.+.  .+-......+..+.|+++|+++.++ .     ++.|.|+|.++++.+
T Consensus       463 ~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~  542 (567)
T 1qks_A          463 EAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK  542 (567)
T ss_dssp             SHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEE
T ss_pred             CcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEE
Confidence                35899999987611    111222210  0000111367899999999998875 2     689999999999988


Q ss_pred             eeec
Q 001311          975 KQWV  978 (1102)
Q Consensus       975 ~~~~  978 (1102)
                      ..+.
T Consensus       543 ~~i~  546 (567)
T 1qks_A          543 HVIK  546 (567)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            8765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=1.3e-14  Score=177.65  Aligned_cols=245  Identities=9%  Similarity=-0.033  Sum_probs=161.9

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEE--ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeE------
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVG--TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVN------  412 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg--~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~------  412 (1102)
                      .+.+|...+..++|++++-+ ++++  +.++...||....+....                   .+..|...|.      
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~   77 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVW-WVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEY   77 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEE-EEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGT
T ss_pred             HHhhcCCccceeEEcCCeEE-EEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCcccccccccc
Confidence            35568999999999988654 5555  557899999964443333                   2445555555      


Q ss_pred             ---EEEEc--cCCCe-EEEEEC-CCeEEEEEcc--C-CceeeeEEEeec-----cccCEEEEEEcCCCCeeEEEEecCC-
Q 001311          413 ---RVIWS--PDGSL-FGVAYS-RHIVQIYSYH--G-GDEVRQHLEIDA-----HVGGVNDIAFSHPNKQLCVITCGDD-  476 (1102)
Q Consensus       413 ---~l~~s--pdg~~-las~~~-d~~v~vwd~~--~-~~~~~~~~~l~~-----h~~~V~~v~~s~d~~~~~l~s~~~d-  476 (1102)
                         ..+|+  |||++ |+.++. +..|.+|++.  + ++ ..   .+..     |...+.+++|+|||+  .|++++.| 
T Consensus        78 ~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~  151 (662)
T 3azo_A           78 SGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEF  151 (662)
T ss_dssp             CCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEE
T ss_pred             CCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecc
Confidence               56665  99999 776654 4566666665  3 43 22   2444     677899999999999  57766665 


Q ss_pred             ---------CcEEEEeCCC------CeeeEEee-cCCCCeEEEeeeecCCccEEEEEeCC--------CeEEEEEcC-CC
Q 001311          477 ---------KTIKVWDATN------GAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALD--------GKIKAWLYD-NL  531 (1102)
Q Consensus       477 ---------~~i~vWd~~~------~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~d--------g~i~~wd~~-~~  531 (1102)
                               ..|++||+.+      ++. ..+. .+...+..++|  ++||++|+.++.+        ..|++||+. ++
T Consensus       152 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g  228 (662)
T 3azo_A          152 TGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDG  228 (662)
T ss_dssp             CSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTS
T ss_pred             cCCCCCCceeEEEEEECCCCccccCCce-eEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCC
Confidence                     5899999987      544 4555 55566666676  5777888887755        379999988 33


Q ss_pred             C--CeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC--eEEEEECCCcceEEEEcCCCCC-
Q 001311          532 G--SRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF--SIKFWDMDSVQLLTSIDADGGL-  606 (1102)
Q Consensus       532 ~--~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~-  606 (1102)
                      .  ....+.                    ......+..+.|+|+|+++++++.++  .|++||+.+++.......+... 
T Consensus       229 ~~~~~~~l~--------------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  288 (662)
T 3azo_A          229 RFADTRTLL--------------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFA  288 (662)
T ss_dssp             CEEEEEEEE--------------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSS
T ss_pred             cccccEEeC--------------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccccccccc
Confidence            1  111111                    11122445566666667677777777  6777777677654433322111 


Q ss_pred             -----CCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          607 -----PASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       607 -----~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                           ..+.+++|++++++++++.. +.++||.+
T Consensus       289 ~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          289 GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             CccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence                 01467889999999998888 88888854

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.66  E-value=3.8e-15  Score=169.85  Aligned_cols=239  Identities=12%  Similarity=-0.030  Sum_probs=153.5

Q ss_pred             CeeEEEEecCCCeEEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      .+.+++|||||++|+++...++  .|.+||+.+++...                   +..++......+.|||||++|+.
T Consensus        37 ~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~   97 (396)
T 3c5m_A           37 YFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFY   97 (396)
T ss_dssp             CTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEE
T ss_pred             eeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEE
Confidence            3788999999998666655433  78889998887543                   12223333344889999999999


Q ss_pred             EECCCeEEEEEccCCceeeeEEEeeccccCEEE-------------------EEEcCCCCeeEEEEe-----cCCCcEEE
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVND-------------------IAFSHPNKQLCVITC-----GDDKTIKV  481 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~-------------------v~~s~d~~~~~l~s~-----~~d~~i~v  481 (1102)
                      ++.++.|++||+.+++... +  ...+......                   +.|+|+++.  ++..     ..+..|++
T Consensus        98 ~~~~~~l~~~d~~~~~~~~-~--~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~  172 (396)
T 3c5m_A           98 VKNELNLMKVDLETLEEQV-I--YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIK  172 (396)
T ss_dssp             EETTTEEEEEETTTCCEEE-E--EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEE
T ss_pred             EEcCCcEEEEECCCCCcEE-E--EecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEE
Confidence            9999999999999887543 1  2223332222                   356788873  3332     45678999


Q ss_pred             EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC------CeEEEEEcCCCCCeeeecCC-CCeeeEEEEccCCc
Q 001311          482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAP-GRWCTTMAYSADGT  554 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~~~~  554 (1102)
                      ||+.+++..... .+...+..+.|++. ++..|+..+.+      ..|.+||+............ ...+..+.      
T Consensus       173 ~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~------  244 (396)
T 3c5m_A          173 VDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEF------  244 (396)
T ss_dssp             EETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEE------
T ss_pred             EECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceE------
Confidence            999988866554 46677888888541 44656655543      35888887654322211111 11334444      


Q ss_pred             eeeeccccCceeEEEEcCCCCEEEEEeCC-----CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEEC--
Q 001311          555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDD-----FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTN--  626 (1102)
Q Consensus       555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~--  626 (1102)
                                     |+|++++|+.++.+     +.|++||+.+++.........    .. +.|+| ||+++++++.  
T Consensus       245 ---------------~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~  304 (396)
T 3c5m_A          245 ---------------WIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDA  304 (396)
T ss_dssp             ---------------ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC
T ss_pred             ---------------ECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCc
Confidence                           44555555555432     459999998887554433221    22 88999 9998887652  


Q ss_pred             --------------CCcEEEEEccCC
Q 001311          627 --------------DNGIKILATSDG  638 (1102)
Q Consensus       627 --------------dg~i~iwd~~~~  638 (1102)
                                    ++.|++||+.++
T Consensus       305 p~~~~~~~~~~~~~~~~i~~~d~~~~  330 (396)
T 3c5m_A          305 PVDVADADSYNIENDPFLYVLNTKAK  330 (396)
T ss_dssp             ----------CCCCCCEEEEEETTTT
T ss_pred             ceeeccccccccCCCCcEEEEecccC
Confidence                          367888887665

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.65  E-value=2.8e-10  Score=141.87  Aligned_cols=554  Identities=9%  Similarity=0.085  Sum_probs=315.1

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      ...|.++...++|..  -.|+. +-+..||..+.+...-. ..               .......|.++...++|.+.+.
T Consensus        87 ~n~I~~i~~d~~g~l--WigT~-~Gl~~yd~~~~~f~~~~-~~---------------~~~~~~~i~~i~~d~~g~lwi~  147 (795)
T 4a2l_A           87 NDISRIVKTDSQGRV--WIGTR-DGLSRYDEEKDIFQNFF-YE---------------KNGKHLQVNGIEEISPEQLLIS  147 (795)
T ss_dssp             CSCEEEEEECTTSCE--EEEES-SCEEEEETTTTEEEEEC-CE---------------ETTEECCCCEEEEEETTEEEEE
T ss_pred             ccceeEEEECCCCCE--EEEeC-CchheeCCCCCeEEecc-cc---------------ccCCCceEEEEEECCCCCEEEE
Confidence            467999999999983  34454 44899998876543210 00               0000012889999988887665


Q ss_pred             EECCCeEEEEEccCCceeeeEEEeecc-ccC-EEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecCCCCeEE
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLEIDAH-VGG-VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYS  502 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h-~~~-V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~  502 (1102)
                      . . +.|..||..+++... .  ..++ ... |.++...+++.   +..+..++.|..||..+++..... ..+...|.+
T Consensus       148 t-~-~gl~~~~~~~~~~~~-~--~~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~  219 (795)
T 4a2l_A          148 T-P-EGLIMFDIKESKFID-D--SFSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQA  219 (795)
T ss_dssp             E-T-TEEEEEETTTTEEEC-S--SSCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEE
T ss_pred             E-C-CceEEEECCCCEEEe-c--cCCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEE
Confidence            4 3 458899987764321 1  0011 123 88898888886   344555556889998777654321 123456777


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      +..  +.++. |..++.++-|..||..+.... .+.....          .   ........+.++..+++|. |..|+.
T Consensus       220 i~~--d~~g~-lwigt~~~Gl~~~~~~~~~~~-~~~~~~~----------~---~~~l~~~~i~~i~~d~~g~-lWigt~  281 (795)
T 4a2l_A          220 ILQ--QSPTR-IWVATEGAGLFLINPKTKEIK-NYLHSPS----------N---PKSISSNYIRSLAMDSQNR-LWIGTF  281 (795)
T ss_dssp             EEE--EETTE-EEEEEBSSCEEEEETTTTEEE-EECCCTT----------C---TTSCSCSBEEEEEECTTSC-EEEEES
T ss_pred             EEE--cCCCC-EEEEECCCCeEEEeCCCCeEE-EeecCCC----------C---ccccCCCeEEEEEEcCCCC-EEEEeC
Confidence            765  34444 555555555888887653321 1111000          0   0000112455555555555 444555


Q ss_pred             CCeEEEEECCCcceEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCC
Q 001311          583 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSE  657 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  657 (1102)
                      + -|.+||..+++........     -....|.++...++|.+.+ |+.++-|..|+..+. . +..+.....       
T Consensus       282 ~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~-~-~~~~~~~~~-------  350 (795)
T 4a2l_A          282 N-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWL-GTYFGGLNYYHPIRN-R-FKNIRNIPY-------  350 (795)
T ss_dssp             S-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEE-EESSSCEEEECGGGG-S-SEEECCCTT-------
T ss_pred             C-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEE-EECCCCeEEeCCCcc-c-ceEEcCCCC-------
Confidence            5 5899998777644332111     0124578888888887554 667778888876543 1 111100000       


Q ss_pred             CCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcc
Q 001311          658 NSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENL  737 (1102)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  737 (1102)
                                                                                            ..      ..
T Consensus       351 ----------------------------------------------------------------------~~------~l  354 (795)
T 4a2l_A          351 ----------------------------------------------------------------------KN------SL  354 (795)
T ss_dssp             ----------------------------------------------------------------------SS------SC
T ss_pred             ----------------------------------------------------------------------CC------CC
Confidence                                                                                  00      01


Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      ....|.++...++|. |..++.++-+..|+.....+            ..+....+.     ....-....|.+++..++
T Consensus       355 ~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-----~~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          355 SDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-----SARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             SCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC-----------CCSCSCEEEEEEETT
T ss_pred             CCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-----cccCCCCccEEEEEEcCC
Confidence            235688888888887 55566666677776532211            000000000     000002456899999999


Q ss_pred             CCeEEEEe-CCeEEEEEcCCCceeeeec----CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc----
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG----  888 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~~~~~----~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~----  888 (1102)
                      ++.|-.|. ++.|.+||..+++......    .....|.++...+ ++++.+ |+. +-|.+||..+++.......    
T Consensus       417 g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~  493 (795)
T 4a2l_A          417 KSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQRSFTTIEKEKDGT  493 (795)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTTEEEECCBCTTCC
T ss_pred             CCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCCeEEEcccccccc
Confidence            98444555 6889999988766433221    2345789999887 676555 444 4588899877654332211    


Q ss_pred             --ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEE
Q 001311          889 --HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF  966 (1102)
Q Consensus       889 --h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iw  966 (1102)
                        +...|.++...++|++.+... +| |..||..+++.   ...............|.++..+++|.+.+.... .|..|
T Consensus       494 ~~~~~~i~~i~~d~~g~lWigt~-~G-l~~~~~~~~~~---~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~  567 (795)
T 4a2l_A          494 PVVSKQITTLFRDSHKRLWIGGE-EG-LSVFKQEGLDI---QKASILPVSNVTKLFTNCIYEASNGIIWVGTRE-GFYCF  567 (795)
T ss_dssp             BCCCCCEEEEEECTTCCEEEEES-SC-EEEEEEETTEE---EECCCSCSCGGGGSCEEEEEECTTSCEEEEESS-CEEEE
T ss_pred             ccCCceEEEEEECCCCCEEEEeC-Cc-eEEEeCCCCeE---EEecCCCCCCCCCCeeEEEEECCCCCEEEEeCC-CceeE
Confidence              235789999998888777554 44 88899876542   111000001111246788888999987665544 78899


Q ss_pred             EcCCceEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecC
Q 001311          967 ETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1045 (1102)
Q Consensus       967 d~~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p 1045 (1102)
                      |..+++....-...+ ....|.++...++|.+.+++  ++-|..||..+++.. .+....-++.    .....-++...+
T Consensus       568 d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~~  640 (795)
T 4a2l_A          568 NEKDKQIKRYNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQS----NQFNTASYCRTS  640 (795)
T ss_dssp             ETTTTEEEEECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCSC----SCEEEEEEEECT
T ss_pred             CCCCCcEEEeCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCcc----ccCccCceeECC
Confidence            988776544222112 24578999999999876655  455788998877654 3442222221    112212455555


Q ss_pred             CCCCEEEEEecCCcEEEEeccCC
Q 001311         1046 QEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1046 ~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                       +|. |..|+.+| +..++...-
T Consensus       641 -~G~-l~~g~~~G-l~~~~p~~~  660 (795)
T 4a2l_A          641 -VGQ-MYFGGING-ITTFRPELL  660 (795)
T ss_dssp             -TSC-EEEEETTE-EEEECGGGC
T ss_pred             -CCe-EEEecCCc-eEEEcHHHc
Confidence             454 55556565 566676543

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=1.3e-13  Score=149.13  Aligned_cols=248  Identities=14%  Similarity=0.174  Sum_probs=174.1

Q ss_pred             cCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE-ccCCCe
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW-SPDGSL  422 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~-spdg~~  422 (1102)
                      ++-..+.+++++|+|+ ++++...++.|.+||.. ++.+.....             .....+|...+.++++ .+++++
T Consensus        27 g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~l   91 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGDI   91 (286)
T ss_dssp             TCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTEE
T ss_pred             CccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCeE
Confidence            3556799999999998 58888889999999987 544432100             0011245567899999 477777


Q ss_pred             EEEEEC-CCeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee--cCCC
Q 001311          423 FGVAYS-RHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--GHEA  498 (1102)
Q Consensus       423 las~~~-d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~--~h~~  498 (1102)
                      +++... ++.|.+|| .+++.+..   +. .+...+.+++++++|+  ++++...++.|.+||. +++.+..+.  ++..
T Consensus        92 ~v~~~~~~~~i~~~d-~~g~~~~~---~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~  164 (286)
T 1q7f_A           92 IVTERSPTHQIQIYN-QYGQFVRK---FGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLE  164 (286)
T ss_dssp             EEEECGGGCEEEEEC-TTSCEEEE---ECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTCS
T ss_pred             EEEcCCCCCEEEEEC-CCCcEEEE---ecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCccC
Confidence            777644 89999999 45554432   32 3446789999999998  7788788899999995 566666664  4556


Q ss_pred             CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      .+.++++  +++|.++++...++.|++||... .....+.....                   ......++++++++.++
T Consensus       165 ~p~~i~~--~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~-------------------~~~p~~i~~d~~G~l~v  222 (286)
T 1q7f_A          165 FPNGVVV--NDKQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGI-------------------TNYPIGVGINSNGEILI  222 (286)
T ss_dssp             SEEEEEE--CSSSEEEEEEGGGTEEEEEETTC-CEEEEESCTTT-------------------SCSEEEEEECTTCCEEE
T ss_pred             CcEEEEE--CCCCCEEEEECCCCEEEEEcCCC-CEEEEEccCCc-------------------cCCCcEEEECCCCCEEE
Confidence            6888887  45667788888899999999743 32222221110                   12345566777777777


Q ss_pred             EEeCCC-eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          579 AAGDDF-SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       579 ~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                      +...++ .|.+||. +++.+..+..+.....+.+++++|+|+++++ +.++.|++|+...
T Consensus       223 ~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          223 ADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             EECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred             EeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence            777775 9999996 5666777665443334668999999987766 6799999998754

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=1.6e-14  Score=177.01  Aligned_cols=334  Identities=9%  Similarity=0.001  Sum_probs=199.0

Q ss_pred             eeccccCEEEEEEcCCCCeeEEEEe--cCCCcEEEEeCCCCeeeEEeecCCCCeE---------EEeeeecCCccE-EEE
Q 001311          449 IDAHVGGVNDIAFSHPNKQLCVITC--GDDKTIKVWDATNGAKQYIFEGHEAPVY---------SVCPHHKENIQF-IFS  516 (1102)
Q Consensus       449 l~~h~~~V~~v~~s~d~~~~~l~s~--~~d~~i~vWd~~~~~~~~~~~~h~~~v~---------~v~~~~~~~~~~-l~s  516 (1102)
                      +.+|...|..++|+++.-  ++++.  +.++...||....+.....+..|...+.         ...|+.++||+. |+.
T Consensus        19 ~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~   96 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEV--WWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVF   96 (662)
T ss_dssp             HHHTCSCCEEEEEETTEE--EEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEE
T ss_pred             HhhcCCccceeEEcCCeE--EEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEE
Confidence            567889999999997644  67777  6688999999766666777877776665         555543477777 665


Q ss_pred             EeC-CCeEEEEEcC--CCCCeeeecC-----CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC-----
Q 001311          517 TAL-DGKIKAWLYD--NLGSRVDYEA-----PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD-----  583 (1102)
Q Consensus       517 ~s~-dg~i~~wd~~--~~~~~~~~~~-----~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----  583 (1102)
                      ++. +..|.+|++.  .......+..     +...+.                     .++|+|||+.|+.++.+     
T Consensus        97 ~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~---------------------~~~~spDg~~l~~~~~~~~~~~  155 (662)
T 3azo_A           97 THFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA---------------------DPVLLPERGEVWCMAEEFTGEG  155 (662)
T ss_dssp             EBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE---------------------EEEEETTTTEEEEEEEEECSSS
T ss_pred             EECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc---------------------CcEECCCCCEEEEEEecccCCC
Confidence            543 5566666654  1033333332     222333                     44555555677777665     


Q ss_pred             -----CeEEEEECCC------cceEEEEc-CCCCCCCcCeEEEcCCCCEEEEEECCC--------cEEEEEcc-CCcc-c
Q 001311          584 -----FSIKFWDMDS------VQLLTSID-ADGGLPASPRIRFNKDGCLLAVSTNDN--------GIKILATS-DGIR-L  641 (1102)
Q Consensus       584 -----g~i~iwd~~~------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg--------~i~iwd~~-~~~~-~  641 (1102)
                           ..|++||+.+      ++.. .+. .+  ...+..++|+|||++|+.++.++        .|++||+. ++.. .
T Consensus       156 ~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~  232 (662)
T 3azo_A          156 PSDVRRFLAAVPLDGSAAADRSAVR-ELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD  232 (662)
T ss_dssp             TTCEEEEEEEEETTSTTTTCGGGSE-ESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred             CCCceeEEEEEECCCCccccCCcee-EEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence                 5899999988      5543 333 22  23577899999999999887553        68888876 3310 0


Q ss_pred             eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311          642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  721 (1102)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~  721 (1102)
                      ...+.                                                                           
T Consensus       233 ~~~l~---------------------------------------------------------------------------  237 (662)
T 3azo_A          233 TRTLL---------------------------------------------------------------------------  237 (662)
T ss_dssp             EEEEE---------------------------------------------------------------------------
T ss_pred             cEEeC---------------------------------------------------------------------------
Confidence            00000                                                                           


Q ss_pred             CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311          722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  801 (1102)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  801 (1102)
                                    ..+...+..+.|+|||+.++++..++...||.++                    ..++........
T Consensus       238 --------------~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~--------------------~~~~~~~~l~~~  283 (662)
T 3azo_A          238 --------------GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD--------------------PATGAATQLCRR  283 (662)
T ss_dssp             --------------EETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC--------------------TTTCCEEESSCC
T ss_pred             --------------CCCCceEcceEECCCCeEEEEECCCCCeEEEEEE--------------------CCCCceeecccc
Confidence                          1134567889999999977777677744554332                    112211110000


Q ss_pred             C-----CCCCCCeeEEEEecCCCeEEEEeCCeEEEE--EcCCCceeeeecCCCCCeeEE-EEecCCCcEEEEEeCCC--c
Q 001311          802 D-----SNPEEAVPCFALSKNDSYVMSASGGKISLF--NMMTFKTMATFMPPPPAATFL-AFHPQDNNIIAIGMDDS--S  871 (1102)
Q Consensus       802 ~-----~~~~~~i~~l~~s~d~~~las~sdg~I~iw--d~~~~~~~~~~~~~~~~i~~l-~~sp~d~~~lasg~~dg--~  871 (1102)
                      .     ..-.-.+..++|++++++++++..+.++||  |+.+++ +..+..|...+..+ +++. +..++++++.+.  .
T Consensus       284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~  361 (662)
T 3azo_A          284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGE-LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYE  361 (662)
T ss_dssp             SSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTE-EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEE
T ss_pred             cccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCc-EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCE
Confidence            0     000111467899999999888866777777  555554 67777777778777 5554 333444455554  4


Q ss_pred             EEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          872 IQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       872 v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      |++||+.+++.......|...+....+++.....+....+..|..|-+
T Consensus       362 i~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~  409 (662)
T 3azo_A          362 VVELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY  409 (662)
T ss_dssp             EEEEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred             EEEEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence            555566566654443445444444444443334444433445666644

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.64  E-value=1.9e-10  Score=143.26  Aligned_cols=545  Identities=10%  Similarity=0.084  Sum_probs=316.9

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      ...|+++.-.++|.  |-.|+.+| +..+|-.+   ..     .+.....    ..  ..-....|.++...++|.+.+ 
T Consensus        42 ~n~v~~I~qD~~G~--lWigT~~G-L~ryDG~~---f~-----~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi-  103 (795)
T 4a2l_A           42 QSTVFSIDQDKRGN--MWFATYDG-VNKYDGYA---FT-----VYQHNED----DP--NSIANDISRIVKTDSQGRVWI-  103 (795)
T ss_dssp             SSCEEEEEECTTSC--EEEEETTE-EEEECSSC---EE-----EECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred             cceeEEEEEcCCCC--EEEeecCc-CcccCCCc---eE-----EEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence            46899999999997  44566665 55666332   21     1111000    00  001235799999999987665 


Q ss_pred             EECCCeEEEEEccCCceeeeEEEeecccc----CEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC-CCC-
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLEIDAHVG----GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH-EAP-  499 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~----~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h-~~~-  499 (1102)
                      |+.+| +..||..+++...    +.....    .|.++...++|.  +.+ ++. +.|.+||..+++......++ ... 
T Consensus       104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~  174 (795)
T 4a2l_A          104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKT  174 (795)
T ss_dssp             EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTC
T ss_pred             EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcc
Confidence            44555 8899988765322    221111    288999888887  444 333 45889998776543211111 112 


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec-CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      |.++..  +.++ .|..++.++.|..|+..+........ ....                     .+.++...+++. +.
T Consensus       175 i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~---------------------~i~~i~~d~~g~-lw  229 (795)
T 4a2l_A          175 IASTLY--RQGD-QIYIGTSTDGLYTYSITQKTFEKVIPILGTK---------------------QIQAILQQSPTR-IW  229 (795)
T ss_dssp             CEEEEE--EETT-EEEEEESSSCEEEEETTTCCEEECC----CC---------------------CEEEEEEEETTE-EE
T ss_pred             eEEEEE--CCCC-CEEEEECCCCEEEEeCCCCeEEEecCCCCCC---------------------eeEEEEEcCCCC-EE
Confidence            777665  3344 45556665568888876543221100 0112                     334444444444 55


Q ss_pred             EEeCCCeEEEEECCCcceEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccc
Q 001311          579 AAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  653 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  653 (1102)
                      .++.++-|.+||..+++........     -....|.++...++|.+.+ |+.+ .|.+|+..++ .. ..+.....   
T Consensus       230 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~-~~-~~~~~~~~---  302 (795)
T 4a2l_A          230 VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTD-SF-ASYSSNPV---  302 (795)
T ss_dssp             EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTT-EE-EEECCCTT---
T ss_pred             EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCC-eE-EEEecCCC---
Confidence            5555555899998776544332211     0123578888888887665 4444 5888887654 21 11110000   


Q ss_pred             ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccC
Q 001311          654 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  733 (1102)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~  733 (1102)
                                                                                               ...    
T Consensus       303 -------------------------------------------------------------------------~~~----  305 (795)
T 4a2l_A          303 -------------------------------------------------------------------------ENG----  305 (795)
T ss_dssp             -------------------------------------------------------------------------STT----
T ss_pred             -------------------------------------------------------------------------CCC----
Confidence                                                                                     000    


Q ss_pred             CCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEE
Q 001311          734 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  813 (1102)
Q Consensus       734 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~  813 (1102)
                        ......|.++...++|. +..++.++-+..|+.....+            ..+.....       ...-....|.+++
T Consensus       306 --~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~~~-------~~~l~~~~V~~i~  363 (795)
T 4a2l_A          306 --SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF------------KNIRNIPY-------KNSLSDNVVSCIV  363 (795)
T ss_dssp             --SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS------------EEECCCTT-------SSSCSCSSEEEEE
T ss_pred             --CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc------------eEEcCCCC-------CCCCCCCeeEEEE
Confidence              01335688999999998 55566666677776533211            00100000       0001345699999


Q ss_pred             EecCCCeEEEEeCCeEEEEEcCCCceeeeecC--------CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311          814 LSKNDSYVMSASGGKISLFNMMTFKTMATFMP--------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       814 ~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~--------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      .+++|.+.+...++.|..|+..+++.......        ....|.+++..+ ++++|.+|+.++-|.+||..+++....
T Consensus       364 ~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~~~~~~~~  442 (795)
T 4a2l_A          364 EDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRNSGQVENF  442 (795)
T ss_dssp             ECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             ECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence            99998866655577899999887654332211        235689999988 777566688877899999887664332


Q ss_pred             ec----cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCC-CCCCCCCCCcEEEEccCCcEEEEEeC
Q 001311          886 LK----GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPT-GRTPTAQSDTRVQFHQDQIHFLVVHE  960 (1102)
Q Consensus       886 l~----~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~d  960 (1102)
                      ..    .+...|.++...++|.+.+... +| |.+||..+++....   .... ........|.++...++|...+... 
T Consensus       443 ~~~~~~l~~~~v~~i~~d~~g~lwigt~-~G-l~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-  516 (795)
T 4a2l_A          443 NQRNSQLVNENVYAILPDGEGNLWLGTL-SA-LVRFNPEQRSFTTI---EKEKDGTPVVSKQITTLFRDSHKRLWIGGE-  516 (795)
T ss_dssp             CTTTSCCSCSCEEEEEECSSSCEEEEES-SC-EEEEETTTTEEEEC---CBCTTCCBCCCCCEEEEEECTTCCEEEEES-
T ss_pred             ecCCCCcCCCeeEEEEECCCCCEEEEec-Cc-eeEEeCCCCeEEEc---cccccccccCCceEEEEEECCCCCEEEEeC-
Confidence            21    2345789999888888766554 44 89999877543211   1100 0011124678899999998777665 


Q ss_pred             CeEEEEEcCCceEeeeecc-----CCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCc
Q 001311          961 TQLAIFETTKLECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1035 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~-----~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1035 (1102)
                      +.|..||..+++. . +..     ......|.++...++|.+.++. .. -|..||..+++.. .+....-++.    ..
T Consensus       517 ~Gl~~~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~~~-~~~~~~gl~~----~~  587 (795)
T 4a2l_A          517 EGLSVFKQEGLDI-Q-KASILPVSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQIK-RYNTTNGLPN----NV  587 (795)
T ss_dssp             SCEEEEEEETTEE-E-ECCCSCSCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTEEE-EECGGGTCSC----SC
T ss_pred             CceEEEeCCCCeE-E-EecCCCCCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCcEE-EeCCCCCCch----hh
Confidence            6799999887766 2 210     1124579999999999866644 34 5888998877654 3332222222    22


Q ss_pred             ccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1036 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1036 v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +.  ++...+ +|++.+++  ++.|..|+..++.
T Consensus       588 i~--~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~  616 (795)
T 4a2l_A          588 VY--GILEDS-FGRLWLST--NRGISCFNPETEK  616 (795)
T ss_dssp             EE--EEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred             eE--EEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence            44  666666 45555544  4667778876554

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.60  E-value=2.4e-13  Score=151.73  Aligned_cols=220  Identities=10%  Similarity=0.107  Sum_probs=153.1

Q ss_pred             CeeEEEEecCCCeEEEEe-C---Ce--EEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC------------
Q 001311          808 AVPCFALSKNDSYVMSAS-G---GK--ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD------------  869 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s-d---g~--I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d------------  869 (1102)
                      .+..++|+|||++|+..+ +   +.  |.+|++.+++.......+ . +..++|+| |++.|+.++.+            
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wsp-dg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNE-DSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECT-TSSEEEEEEECCCC---------
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECC-CCCEEEEEEccCCCcCCcEEEcc
Confidence            467899999999999876 3   33  888898887765544433 3 99999999 88888877642            


Q ss_pred             ---------------CcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC-------cEEEEEcCCCcccce
Q 001311          870 ---------------SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------QLCVWSSDGWEKQKN  927 (1102)
Q Consensus       870 ---------------g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~i~vwd~~~~~~~~~  927 (1102)
                                     ..|++||+.+++.+..+.. . .+..++|+||| +++++..+.       ...||.+++++..  
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~--  211 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE--  211 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE--
T ss_pred             cceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE--
Confidence                           5799999988876455554 4 78999999999 877776542       4455555443321  


Q ss_pred             eeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC--------CeEEEEEcCCceEeeeeccCCCCCCeeE-EEEcCCCcE
Q 001311          928 RFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE--------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQL  997 (1102)
Q Consensus       928 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~-l~~spd~~~  997 (1102)
                      ....   +     ..+..  ++|||++|+.. .+        ..|.+||  +++......  +|...+.. +.|+ |+ +
T Consensus       212 ~l~~---~-----~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~--~~~~~~~~~~~~s-dg-~  275 (347)
T 2gop_A          212 KMFE---K-----VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILD--EVDRGVGQAKIKD-GK-V  275 (347)
T ss_dssp             EEEE---E-----ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESST--TCCSEEEEEEEET-TE-E
T ss_pred             Eecc---C-----cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccc--cCCcccCCccEEc-Cc-E
Confidence            1111   1     12333  39999998874 22        3688888  555543332  55678886 9999 88 8


Q ss_pred             EEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcE-EEEecc
Q 001311          998 VYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGV-HVFEPL 1066 (1102)
Q Consensus       998 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v-~vW~~~ 1066 (1102)
                      +++++.++.++|| +.+++....+.       +  ...+.  .+.|+|   .++++++.++.. .+|.+.
T Consensus       276 ~~~~~~~~~~~l~-~~~g~~~~~~~-------~--~~~v~--~~~~s~---~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          276 YFTLFEEGSVNLY-IWDGEIKPIAK-------G--RHWIM--GFDVDE---IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEETTEEEEE-EESSSEEEEEC-------S--SSEEE--EEEESS---SEEEEEECSSSCCEEEEES
T ss_pred             EEEEecCCcEEEE-EcCCceEEEec-------C--CCeEE--eeeeeC---cEEEEEcCCCChHHheEeC
Confidence            9999999999999 88776543332       1  11244  788887   577787777765 788776

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=7.7e-13  Score=143.75  Aligned_cols=245  Identities=9%  Similarity=0.060  Sum_probs=168.1

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +..+.....+++|+|+|+.+++++..++.|.+||..++  ...                   +..+...+.+++|+|+|+
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~~~dg~   81 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCLNKQGH   81 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEECTTCC
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeECCCCc
Confidence            44566788999999999977899999999999999877  221                   334567899999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEEeec-cccCEEEEEEcCCCCeeEEEE----ec-------------CCCcEEEEe
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVIT----CG-------------DDKTIKVWD  483 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s----~~-------------~d~~i~vWd  483 (1102)
                      ++++...++.|.+||..+++.........+ ....+..++++++|+  ++++    |.             ..+.|..++
T Consensus        82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~  159 (296)
T 3e5z_A           82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA  159 (296)
T ss_dssp             EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred             EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence            888877789999999988764322111111 123567899999998  6776    33             134566666


Q ss_pred             CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCe-eeecCCCCeeeEEEEccCCceeeecccc
Q 001311          484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR-VDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      .. ++ +..+..+......++|  +++++.+++.+.++.|.+|++...... ...                 ..+ ....
T Consensus       160 ~~-g~-~~~~~~~~~~~~gi~~--s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~-----------------~~~-~~~~  217 (296)
T 3e5z_A          160 PD-GT-LSAPIRDRVKPNGLAF--LPSGNLLVSDTGDNATHRYCLNARGETEYQG-----------------VHF-TVEP  217 (296)
T ss_dssp             TT-SC-EEEEECCCSSEEEEEE--CTTSCEEEEETTTTEEEEEEECSSSCEEEEE-----------------EEE-CCSS
T ss_pred             CC-CC-EEEeecCCCCCccEEE--CCCCCEEEEeCCCCeEEEEEECCCCcCcCCC-----------------eEe-eCCC
Confidence            54 44 4445556677888887  456677788888899999998732222 000                 001 0011


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCC
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      .....++++++|+.+++.  ++.|.+||.. ++.+..+..+..   +.+++| +|+++.|++++.++ +.-++..+.
T Consensus       218 ~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          218 GKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             SCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             CCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            233446677777755555  8899999986 777777765433   788999 68999999988763 444454443

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.58  E-value=3.6e-13  Score=150.28  Aligned_cols=222  Identities=11%  Similarity=0.109  Sum_probs=145.7

Q ss_pred             CCeeEEEEecCCCeEEEEE--------ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          347 SSPMSMDFHPVQQTLLLVG--------TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg--------~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      ..+..++|  ||++++.+.        ..++.|.+||+.+++...                    +    ..+.+++|||
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp   68 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP   68 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence            45677888  999865543        225789999998876432                    2    4688999999


Q ss_pred             CCCeEEEEECC---C--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC------------------
Q 001311          419 DGSLFGVAYSR---H--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------------------  475 (1102)
Q Consensus       419 dg~~las~~~d---~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~------------------  475 (1102)
                      ||++||.++.+   +  .|.+||+.+++...    +..+.. +..++|+|||+.  |+.++.                  
T Consensus        69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~  141 (347)
T 2gop_A           69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF  141 (347)
T ss_dssp             TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred             CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence            99999988754   3  47788888876443    223334 999999999995  554442                  


Q ss_pred             ---------CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCC-------eEEEEEcCCCCCeeeecC
Q 001311          476 ---------DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDG-------KIKAWLYDNLGSRVDYEA  539 (1102)
Q Consensus       476 ---------d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg-------~i~~wd~~~~~~~~~~~~  539 (1102)
                               ...|.+||+.+++.+..+.. . .+..+.|+  ++| +++++..++       ...+|.++ ......+..
T Consensus       142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~  215 (347)
T 2gop_A          142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFE  215 (347)
T ss_dssp             --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEE
T ss_pred             cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEecc
Confidence                     25799999999987555654 3 67777774  666 777776542       44555544 222221111


Q ss_pred             CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC--------CeEEEEECCCcceEEEEcCCCCCCCcCe
Q 001311          540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD--------FSIKFWDMDSVQLLTSIDADGGLPASPR  611 (1102)
Q Consensus       540 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~  611 (1102)
                      +                      ..+..  ++|+|++|+.++.+        ..|++||  +++.......+  ...+..
T Consensus       216 ~----------------------~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~--~~~~~~  267 (347)
T 2gop_A          216 K----------------------VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEV--DRGVGQ  267 (347)
T ss_dssp             E----------------------ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTC--CSEEEE
T ss_pred             C----------------------cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccC--CcccCC
Confidence            1                      11222  26666667766643        4688888  55543333322  235665


Q ss_pred             -EEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          612 -IRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       612 -~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                       +.|+ |+ ++++++.++.+++| +.++
T Consensus       268 ~~~~s-dg-~~~~~~~~~~~~l~-~~~g  292 (347)
T 2gop_A          268 AKIKD-GK-VYFTLFEEGSVNLY-IWDG  292 (347)
T ss_dssp             EEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred             ccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence             8899 88 88899999999999 8643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.57  E-value=6.2e-13  Score=147.39  Aligned_cols=274  Identities=12%  Similarity=0.102  Sum_probs=182.5

Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      ..|.++.|++++..++..+.++.++.|.-.                 .|.       .  +.  .+...+.+++|+++|+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-------~--~~--~~~~~~~~~~~~~~g~   57 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTITAE-----------------PWL-------E--IS--KKGLQLEGLNFDRQGQ   57 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-----------------EEE-------E--EE--SSCCCEEEEEECTTSC
T ss_pred             cccceeeecCCccceeEEeecccCcccccc-----------------eeE-------E--Ee--ccCccccCcEECCCCC
Confidence            456677888888877777777777776210                 000       0  11  1445678999999999


Q ss_pred             eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC----CcEEEEEeecceeeeeec--ccccc
Q 001311          820 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEVKSKLK--GHSKR  892 (1102)
Q Consensus       820 ~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~~~~l~--~h~~~  892 (1102)
                      +++++. ++.|.+||..+++.......+...+.++++++ +++++++...+    +.|++||..+++....+.  .+...
T Consensus        58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~  136 (333)
T 2dg1_A           58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYC  136 (333)
T ss_dssp             EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCC
T ss_pred             EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCc
Confidence            777776 78999999988776655545667899999999 88888877666    689999988776543332  24457


Q ss_pred             ceeEEEecCCCEEEEEcC------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEE
Q 001311          893 ITGLAFSHALNVLVSSGA------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLA  964 (1102)
Q Consensus       893 V~~l~~s~d~~~l~s~s~------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~  964 (1102)
                      +.+++++|+|+++++...      .+.|..|+.++++...  .....       ..+..++|+|||++|+++  .++.|.
T Consensus       137 ~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~-------~~~~~i~~~~dg~~l~v~~~~~~~i~  207 (333)
T 2dg1_A          137 IDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNI-------SVANGIALSTDEKVLWVTETTANRLH  207 (333)
T ss_dssp             EEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEE-------SSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             ccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEE--eecCC-------CcccceEECCCCCEEEEEeCCCCeEE
Confidence            899999999998887764      2445666655433211  11111       145789999999877664  468999


Q ss_pred             EEEcCC-ceEeee-----e-ccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCccc
Q 001311          965 IFETTK-LECVKQ-----W-VPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVH 1037 (1102)
Q Consensus       965 iwd~~~-~~~~~~-----~-~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~ 1037 (1102)
                      +||..+ +.....     . ...++ ..+..++++++|+++++...++.|.+||. +++.+..+..... ..||.   ..
T Consensus       208 ~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~-~~g~~---~~  281 (333)
T 2dg1_A          208 RIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR-DEGHM---LR  281 (333)
T ss_dssp             EEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG-GGTCS---CB
T ss_pred             EEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC-ccccc---cC
Confidence            999964 332211     1 11122 46788999999998888888899999998 5666666641110 00110   12


Q ss_pred             ceEEEecCCCCCEEEEEecCC
Q 001311         1038 PLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus      1038 ~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
                      +..++|+| |+..|..++.++
T Consensus       282 ~~~~~~~~-dg~~L~v~~~~g  301 (333)
T 2dg1_A          282 STHPQFIP-GTNQLIICSNDI  301 (333)
T ss_dssp             CCEEEECT-TSCEEEEEEECG
T ss_pred             cceEEECC-CCCEEEEEeCcc
Confidence            44899988 566665555553

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=2.9e-12  Score=140.00  Aligned_cols=204  Identities=11%  Similarity=0.079  Sum_probs=142.1

Q ss_pred             eeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeee
Q 001311          809 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKS  884 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~  884 (1102)
                      ...++++|||+++.++.   ++.|.++|+.+++.+.++....  . ...+.. +.+.+++.+.||.+.+.++.+ ++...
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence            45688889999888774   4789999999999998886322  1 233333 566777888899999999876 55432


Q ss_pred             eeccc----cccce-eEEEe-cCCCEEEEEcCCCcEEEEEcCCCcccceeeeecC------CCCCCCCCCCcEEEEccCC
Q 001311          885 KLKGH----SKRIT-GLAFS-HALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIP------TGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       885 ~l~~h----~~~V~-~l~~s-~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~spdg  952 (1102)
                      ....+    ...+. ...|. ++|++++ .+.+|+|.+.|+.+........+...      .+-.  +.....+++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~~  291 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRAL  291 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETTT
T ss_pred             eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCCC
Confidence            21111    12222 24665 6776555 55689999999977543211112110      1100  1244568889999


Q ss_pred             cEEEEEe-----------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEe-CCCeEEEEEcCCceeEE
Q 001311          953 IHFLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRC 1019 (1102)
Q Consensus       953 ~~l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s-~Dg~I~vwd~~~~~~~~ 1019 (1102)
                      +.+.+..           .+.|.++|+.+++.++.+..   ...+.+|+|++|++ +|++++ .++.|.|+|..+++.+.
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v---g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM---GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE---EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC---CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence            9998852           14799999999999999875   34788999999997 666654 48999999999999999


Q ss_pred             EeC
Q 001311         1020 RIN 1022 (1102)
Q Consensus      1020 ~~~ 1022 (1102)
                      ++.
T Consensus       369 ~i~  371 (386)
T 3sjl_D          369 SVN  371 (386)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            988

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.56  E-value=8.9e-13  Score=145.17  Aligned_cols=241  Identities=11%  Similarity=0.113  Sum_probs=173.5

Q ss_pred             CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311          807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      .....+++. +++.+++.. ++.|.+||..+++.+.++. .......+++++ +++++++...++.|.+||..+++....
T Consensus        44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~  120 (328)
T 3dsm_A           44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY  120 (328)
T ss_dssp             SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred             ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence            345677774 344444444 7999999999999988885 346789999998 776555554799999999999988776


Q ss_pred             ecccc-----ccceeEEEecCCCEEEEEc-CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-
Q 001311          886 LKGHS-----KRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-  958 (1102)
Q Consensus       886 l~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-  958 (1102)
                      +....     .....|++ .+++.+++.. .++.|.+||..+++....  +..  +     .....++++++|++++++ 
T Consensus       121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~--i~~--g-----~~p~~i~~~~dG~l~v~~~  190 (328)
T 3dsm_A          121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDE--LTI--G-----IQPTSLVMDKYNKMWTITD  190 (328)
T ss_dssp             EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEE--EEC--S-----SCBCCCEECTTSEEEEEBC
T ss_pred             EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEE--EEc--C-----CCccceEEcCCCCEEEEEC
Confidence            65332     14567888 4444444443 488999999998764322  211  2     134788999999987775 


Q ss_pred             eC----------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccC
Q 001311          959 HE----------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP 1028 (1102)
Q Consensus       959 ~d----------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~ 1028 (1102)
                      .+          +.|.++|..+++....+.... ...+..++|+||+++|+++..  .|.+||..+++....    .+.+
T Consensus       191 ~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~----~~~~  263 (328)
T 3dsm_A          191 GGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR----PFLE  263 (328)
T ss_dssp             CBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT-TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSS----CSBC
T ss_pred             CCccCCccccCCceEEEEECCCCeEEEEEecCC-CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeee----eeec
Confidence            33          789999999999887765321 347899999999999988764  899999999886421    1122


Q ss_pred             CCCCCCcccceEEEecCCCCCEEEEE----ecCCcEEEEeccCCCccc
Q 001311         1029 AGVSSSNVHPLVIAAHPQEPNEFALG----LSDGGVHVFEPLESEGKW 1072 (1102)
Q Consensus      1029 ~gh~~~~v~~~~v~f~p~d~~~l~s~----~~Dg~v~vW~~~~~~~~~ 1072 (1102)
                      .+    .-.|-.++++|+++.+.++.    ..++.|.+||.. ++-.+
T Consensus       264 ~~----~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~  306 (328)
T 3dsm_A          264 FR----DTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLID  306 (328)
T ss_dssp             CC----SSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEE
T ss_pred             CC----CCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEE
Confidence            11    13455899999777888887    778999999998 66333

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=7.2e-13  Score=141.19  Aligned_cols=253  Identities=10%  Similarity=0.035  Sum_probs=186.5

Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-ccc
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRI  893 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V  893 (1102)
                      .+++|++++ ++.|.+||.++++.+.++..+. ..+.+++++| +|++|+  +.++.|+.||. +++.+..+..+. ..+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            457788888 8999999999999999998776 4789999999 899888  45788999998 899888887653 468


Q ss_pred             eeEEEecCCCEEEEEcC-CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCc
Q 001311          894 TGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKL  971 (1102)
Q Consensus       894 ~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~  971 (1102)
                      .++.+.+||+++++.+. ++.|..+|.+ ++......+.  .+..........+++.++|.++++. .++.|..||.+ |
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~l~~~~~~--~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G  155 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNMK-GEVLSKTEFE--TGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G  155 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECTT-SCEEEEEEEC--CSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeCC-CCEEEEEecc--CCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence            88999999999999887 7777777764 3332222111  1100011234567889999999986 78999999998 9


Q ss_pred             eEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEE
Q 001311          972 ECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEF 1051 (1102)
Q Consensus       972 ~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l 1051 (1102)
                      +.+..+...   ..+.++.+.++|.++++++.++.|..+|..+|+.+.++.... .+..   .-..+.++...+ +++++
T Consensus       156 ~~~w~~~~~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-~~~~---~l~~~~~~~~~~-~G~i~  227 (276)
T 3no2_A          156 QLLNSVKLS---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-IEGV---QLFFVAQLFPLQ-NGGLY  227 (276)
T ss_dssp             CEEEEEECS---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-SBSC---CCSEEEEEEECT-TSCEE
T ss_pred             CEEEEEECC---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-CCCc---cccccccceEcC-CCCEE
Confidence            988887642   456778889999999999888999999999999998886211 1111   112345777777 67787


Q ss_pred             EEEe--cC------CcEEEEec-cCCCcccccCCCCCCCCCCC
Q 001311         1052 ALGL--SD------GGVHVFEP-LESEGKWGVPPPVDNGSTSS 1085 (1102)
Q Consensus      1052 ~s~~--~D------g~v~vW~~-~~~~~~~~~~~~~~~~~~~~ 1085 (1102)
                      ++..  ..      +..+++++ .+++-.|+.....+-|.+++
T Consensus       228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~  270 (276)
T 3no2_A          228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST  270 (276)
T ss_dssp             EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred             EEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence            7763  11      24467777 56678888877777766665

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=4.8e-13  Score=164.65  Aligned_cols=249  Identities=10%  Similarity=-0.004  Sum_probs=165.3

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCC----eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      |...+..++|||||++|+.+.+.+|    .|++||+.+++.+..                  .+..  ..+..++|||||
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~~~--~~~~~~~wspDg  182 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLER--VKFSCMAWTHDG  182 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEEE--ECSCCEEECTTS
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cccC--cccceEEEEeCC
Confidence            4456889999999998555544444    899999999987652                  1111  136789999999


Q ss_pred             CeEEEEECCCe----------------EEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecC-----CCc
Q 001311          421 SLFGVAYSRHI----------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD-----DKT  478 (1102)
Q Consensus       421 ~~las~~~d~~----------------v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~-----d~~  478 (1102)
                      +.|+.++.++.                |++|++.+++.. ........|...+..+.|+|||+.  |+.++.     +..
T Consensus       183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~  260 (710)
T 2xdw_A          183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR  260 (710)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred             CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence            99999988766                999999887632 111122235566889999999995  444332     578


Q ss_pred             EEEEeCCC------Ce-eeEEeecCCCCeEEEeeeecCCccEEEEEeCC----CeEEEEEcCCCCC--eeeecCCCCeee
Q 001311          479 IKVWDATN------GA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGS--RVDYEAPGRWCT  545 (1102)
Q Consensus       479 i~vWd~~~------~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~--~~~~~~~~~~v~  545 (1102)
                      |++||+.+      +. ....+..+...+... |++  +|..|+..+.+    +.|.+||+.+...  ...+..+..   
T Consensus       261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~---  334 (710)
T 2xdw_A          261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE---  334 (710)
T ss_dssp             EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS---
T ss_pred             EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC---
Confidence            99999987      53 466677777666553 544  34555554442    3699999877542  122222211   


Q ss_pred             EEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCe--EEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEE
Q 001311          546 TMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV  623 (1102)
Q Consensus       546 ~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  623 (1102)
                                      ...+..+.+++++.++++...++.  |++|++.+++.+..+..+  ...+..++++|++..++.
T Consensus       335 ----------------~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~  396 (710)
T 2xdw_A          335 ----------------KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFY  396 (710)
T ss_dssp             ----------------SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEE
T ss_pred             ----------------CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEE
Confidence                            112333444444456777777774  666787678777777655  335778889999877664


Q ss_pred             EEC----CCcEEEEEccCCc
Q 001311          624 STN----DNGIKILATSDGI  639 (1102)
Q Consensus       624 ~~~----dg~i~iwd~~~~~  639 (1102)
                      ...    .++|+.||+.++.
T Consensus       397 ~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          397 QFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEECSSCCCEEEEEETTSSS
T ss_pred             EEeCCCCCCEEEEEECCCCc
Confidence            432    4789999998773

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.55  E-value=1.5e-11  Score=133.67  Aligned_cols=281  Identities=11%  Similarity=0.110  Sum_probs=191.6

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      +...+.+++++++|+.+++...++.|.+|+..                       +.........  ....+.+++++++
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~   67 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLPT--PDAKVMCLTISSD   67 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECSS--TTCCEEEEEECTT
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCCc--ccCceeeEEECCC
Confidence            44678999999999977766667888888752                       1111111111  3456889999999


Q ss_pred             CCeEEEEe-CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee-eccccccce
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRIT  894 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~  894 (1102)
                      |.++++.. ++.|..||.. ++.. ..+......+..+++++ +++++++...++.|.+||. +++.... +..+...+.
T Consensus        68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~  144 (299)
T 2z2n_A           68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS  144 (299)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred             CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence            99888776 7889999986 3321 22223455789999999 8888887777889999998 5544322 233455688


Q ss_pred             eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE
Q 001311          895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  973 (1102)
Q Consensus       895 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~  973 (1102)
                      ++++.++|++.++...++.|.+||. +++...   ......    ...+..++++++|++.++. .++.|.+||. +++.
T Consensus       145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~~----~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIPTP----ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEI  215 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECSST----TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCCCC----CCcceeEEECCCCCEEEEccCCceEEEECC-CCcE
Confidence            9999999998888877889999998 544321   111111    1256789999999977665 5789999999 6664


Q ss_pred             eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311          974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus       974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
                      .. +....+...+.+++++++|+++++...++.|.+||. +++.. .+.    .+.+  .  -.+.++++ + ++.+.++
T Consensus       216 ~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~----~~~~--~--~~~~~i~~-~-~g~l~v~  282 (299)
T 2z2n_A          216 TE-FKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYP----IQIK--S--AEPHGICF-D-GETIWFA  282 (299)
T ss_dssp             EE-EECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEE----CSSS--S--CCEEEEEE-C-SSCEEEE
T ss_pred             EE-EECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEe----CCCC--C--CccceEEe-c-CCCEEEE
Confidence            43 323344678999999999997776667899999998 45433 332    1111  1  22447788 5 5666666


Q ss_pred             EecCCcEEEEeccCCC
Q 001311         1054 GLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1054 ~~~Dg~v~vW~~~~~~ 1069 (1102)
                      .. .+.|..+++.+++
T Consensus       283 ~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          283 ME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             ET-TTEEEEEEEC---
T ss_pred             ec-CCcEEEEEcCccc
Confidence            54 6788888876643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.54  E-value=2.4e-11  Score=135.32  Aligned_cols=204  Identities=9%  Similarity=0.004  Sum_probs=140.5

Q ss_pred             eeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          809 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      ...++++|||++|+++.   ++.|.++| .+++.+.+ +....    ++.+.|++.+.+++.+.||.+.++|. +++...
T Consensus       127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~  200 (373)
T 2mad_H          127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG  200 (373)
T ss_pred             ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence            34678889998888775   36799999 99988877 65322    24556645567777888999999999 777653


Q ss_pred             eec-----ccccc-ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC----CCCCCCCcEEEEccCCcE
Q 001311          885 KLK-----GHSKR-ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR----TPTAQSDTRVQFHQDQIH  954 (1102)
Q Consensus       885 ~l~-----~h~~~-V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~spdg~~  954 (1102)
                      ...     ....+ .....+.+++..++..+.++.+.+.|+.+........+......    ...+.....+++++|++.
T Consensus       201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~  280 (373)
T 2mad_H          201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG  280 (373)
T ss_pred             EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence            321     11112 12356777766655555788999999976532211111111100    000122345889999998


Q ss_pred             EEEEe-----------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEe-CCCeEEEEEcCCceeEEEe
Q 001311          955 FLVVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       955 l~~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s-~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
                      +.++.           .+.|.++|..+++.+..+..   .....+++|+|||+ +++++. .++.|.|||+.+++.+.++
T Consensus       281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~---g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i  357 (373)
T 2mad_H          281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL---GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST  357 (373)
T ss_pred             EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC---CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence            88842           25799999999999988864   33689999999999 777777 5899999999999999874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.53  E-value=2.1e-12  Score=142.21  Aligned_cols=273  Identities=10%  Similarity=0.017  Sum_probs=184.7

Q ss_pred             CCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceecc
Q 001311          710 SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQ  789 (1102)
Q Consensus       710 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~  789 (1102)
                      .++.+.++|..+.........-. ...........+.+. +++.+++...++.|.+||.                     
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~-n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~---------------------   71 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRA-NGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDI---------------------   71 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHH-HSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEET---------------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhh-cCcccCccceEEEEE-CCEEEEEEcCCCEEEEEEC---------------------
Confidence            46889999987643322111000 001122345667774 3444555555788888876                     


Q ss_pred             CCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCC-----CCeeEEEEecCCCcEE
Q 001311          790 PPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPP-----PAATFLAFHPQDNNII  863 (1102)
Q Consensus       790 ~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~-----~~i~~l~~sp~d~~~l  863 (1102)
                       .+++.+... .   .......++++++++.+++.. ++.|.+||..+++....+....     .....+++ . +++++
T Consensus        72 -~t~~~~~~i-~---~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly  144 (328)
T 3dsm_A           72 -NTFKEVGRI-T---GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY  144 (328)
T ss_dssp             -TTCCEEEEE-E---CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred             -cccEEEEEc-C---CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence             333332221 1   235678999999996555553 8999999999998877765333     14667777 3 66666


Q ss_pred             EEEe-CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCC----------CcEEEEEcCCCcccceeeeec
Q 001311          864 AIGM-DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD----------SQLCVWSSDGWEKQKNRFLQI  932 (1102)
Q Consensus       864 asg~-~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----------g~i~vwd~~~~~~~~~~~~~~  932 (1102)
                      ++.. .++.|.+||..+++.+..+... .....++++++|++++++..+          +.|.+||..+++...  .+..
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~  221 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF  221 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence            6554 4889999999999888777643 345789999999988877655          789999998866432  2222


Q ss_pred             CCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC-CCcEEEEE----eCCCeE
Q 001311          933 PTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC-DSQLVYAC----FLDATV 1007 (1102)
Q Consensus       933 ~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp-d~~~l~s~----s~Dg~I 1007 (1102)
                      ..+     .....++|+||+++|.++.. .|.+||..+++.........+......++++| +++++++.    ..++.|
T Consensus       222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            222     24689999999999888654 89999999888643222112246789999999 45555555    568999


Q ss_pred             EEEEcCCceeEEEeC
Q 001311         1008 CVFSAANLKLRCRIN 1022 (1102)
Q Consensus      1008 ~vwd~~~~~~~~~~~ 1022 (1102)
                      .+||.+ |+.+.++.
T Consensus       296 ~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          296 YRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTT-CCEEEEEE
T ss_pred             EEECCC-CCEEEEEE
Confidence            999998 99988876

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=3.7e-12  Score=156.77  Aligned_cols=245  Identities=9%  Similarity=0.031  Sum_probs=169.5

Q ss_pred             cccceEEEEEccCCceEEEeecCc-----eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEE
Q 001311          738 RATKISRLIFTNSGNAILALASNA-----IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  812 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l  812 (1102)
                      +...+..++|||||++|+.+..++     .|++||+                      .+|......+    ....+..+
T Consensus       123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~----------------------~tg~~~~~~~----~~~~~~~~  176 (710)
T 2xdw_A          123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV----------------------DGAKELPDVL----ERVKFSCM  176 (710)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET----------------------TTTEEEEEEE----EEECSCCE
T ss_pred             CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEEC----------------------CCCCCCcccc----cCcccceE
Confidence            444688999999999998776643     7777776                      3443322111    11225679


Q ss_pred             EEecCCCeEEEEe-CCe----------------EEEEEcCCCce----eeeecCCCCCeeEEEEecCCCcEEEEEeC---
Q 001311          813 ALSKNDSYVMSAS-GGK----------------ISLFNMMTFKT----MATFMPPPPAATFLAFHPQDNNIIAIGMD---  868 (1102)
Q Consensus       813 ~~s~d~~~las~s-dg~----------------I~iwd~~~~~~----~~~~~~~~~~i~~l~~sp~d~~~lasg~~---  868 (1102)
                      +|+|||+.|+.++ ++.                |++|++.+++.    +.....|...+..++|+| |+++|+.++.   
T Consensus       177 ~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~  255 (710)
T 2xdw_A          177 AWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGC  255 (710)
T ss_dssp             EECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSS
T ss_pred             EEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccC
Confidence            9999999999887 544                99999988763    222233455678999999 8888888765   


Q ss_pred             --CCcEEEEEeec------ce-eeeeeccccccceeEEEecCCCEEEEEcCC----CcEEEEEcCCCcccceeeeecCCC
Q 001311          869 --DSSIQIYNVRV------DE-VKSKLKGHSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTG  935 (1102)
Q Consensus       869 --dg~v~vwd~~~------~~-~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~  935 (1102)
                        +..|++||+.+      +. ....+..+...+.. .|++||+.|+..+.+    +.|.+||+.+++......+.....
T Consensus       256 ~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~  334 (710)
T 2xdw_A          256 DPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE  334 (710)
T ss_dssp             SSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS
T ss_pred             CCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC
Confidence              56899999987      43 35666667666655 588999888766553    359999998764322222211111


Q ss_pred             CCCCCCCCcEEEEccCCcEEEEE-eCC--eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEE-e---CCCeEE
Q 001311          936 RTPTAQSDTRVQFHQDQIHFLVV-HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYAC-F---LDATVC 1008 (1102)
Q Consensus       936 ~~~~~~~v~~~~~spdg~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~-s---~Dg~I~ 1008 (1102)
                          ...+..++|++++.++++. .++  .|++|++.+++.+..+.  .+.+.+..+.++||++.++.. +   ..++|+
T Consensus       335 ----~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~--~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~  408 (710)
T 2xdw_A          335 ----KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFP--LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIY  408 (710)
T ss_dssp             ----SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEEC--CCSSEEEEEECCTTCSEEEEEEECSSCCCEEE
T ss_pred             ----CCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecC--CCCceEEEEecCCCCCEEEEEEeCCCCCCEEE
Confidence                0246778898777777774 666  46777887787666665  346788999999999766533 2   347899


Q ss_pred             EEEcCCce
Q 001311         1009 VFSAANLK 1016 (1102)
Q Consensus      1009 vwd~~~~~ 1016 (1102)
                      +||+.+++
T Consensus       409 ~~d~~tg~  416 (710)
T 2xdw_A          409 HCDLTKEE  416 (710)
T ss_dssp             EEETTSSS
T ss_pred             EEECCCCc
Confidence            99999887

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.53  E-value=2.2e-12  Score=142.94  Aligned_cols=195  Identities=14%  Similarity=0.081  Sum_probs=135.4

Q ss_pred             CCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCe
Q 001311          409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGA  488 (1102)
Q Consensus       409 ~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~  488 (1102)
                      ..|.+++|++++..++..+.++.+++|.   ++...   .+..+...+.+++|+++++  +++++..++.|.+||..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWL---EISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEE---EEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCccceeEEeecccCcccc---cceeE---EEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence            3578889999998888888889999992   33232   4666777889999999998  67788889999999998888


Q ss_pred             eeEEeecCCCCeEEEeeeecCCccEEEEEeCC----CeEEEEEcCCCCCeeeec--CCCCeeeEEEEccCCceeeecccc
Q 001311          489 KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD----GKIKAWLYDNLGSRVDYE--APGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       489 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d----g~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      .......+...+.++++  +++|.++++...+    +.|.+||..+......+.  ....                    
T Consensus        78 ~~~~~~~~~~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~--------------------  135 (333)
T 2dg1_A           78 IKRPFVSHKANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY--------------------  135 (333)
T ss_dssp             EEEEEECSSSSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC--------------------
T ss_pred             EEEEeeCCCCCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC--------------------
Confidence            76655456778999987  4566777777666    689999987654432221  1112                    


Q ss_pred             CceeEEEEcCCCCEEEEEeC------CCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEc
Q 001311          563 RSLGVVQFDTTKNRFLAAGD------DFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILAT  635 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~  635 (1102)
                       .+..+.++++++.+++...      .+.|..||..+++.......   ...+..++|+|+++.|+++ +.++.|.+|+.
T Consensus       136 -~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          136 -CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             -CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             -cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence             3445556666655555443      35677777665554333221   1236789999999866555 45688999987


Q ss_pred             cC
Q 001311          636 SD  637 (1102)
Q Consensus       636 ~~  637 (1102)
                      .+
T Consensus       212 ~~  213 (333)
T 2dg1_A          212 ED  213 (333)
T ss_dssp             CT
T ss_pred             cC
Confidence            53

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.53  E-value=4e-13  Score=164.81  Aligned_cols=240  Identities=13%  Similarity=0.063  Sum_probs=162.7

Q ss_pred             CCCCeeEEEEecCCCeEEEEe------CCeEEEEEcCCCceeeeecCCCCC--eeEEEEecCCCcEEEEEeCCCc-----
Q 001311          805 PEEAVPCFALSKNDSYVMSAS------GGKISLFNMMTFKTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSS-----  871 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s------dg~I~iwd~~~~~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~-----  871 (1102)
                      |...+..++|||||++||.+.      +.+|++||+.+++.+.  ..+...  ...++|+| |++.|+.++.|..     
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wsp-Dg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTP-DSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECT-TSSEEEEEECCCCTTSCG
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEec-CCCEEEEEEecCCCCCcc
Confidence            455688999999999999553      2579999999988651  112122  26899999 8999999988776     


Q ss_pred             --------EEEEEeecce----eeeeeccccccceeEEEecCCCEEEEEcCCC----cEEEEEcCCCcccceeeeecCCC
Q 001311          872 --------IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS----QLCVWSSDGWEKQKNRFLQIPTG  935 (1102)
Q Consensus       872 --------v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg----~i~vwd~~~~~~~~~~~~~~~~~  935 (1102)
                              |++|++.++.    ++.....|...+.++.|||||++|+..+.++    .|++|+..+++.   ..+.... 
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~---~~l~~~~-  271 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF---RLLVKGV-  271 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC---EEEEECS-
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce---EEeecCC-
Confidence                    9999998765    4444455667788999999999998877665    677776554432   1222111 


Q ss_pred             CCCCCCCCcEEEEccCCcEEEE-Ee----CCeEEEEEcCCceE--eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311          936 RTPTAQSDTRVQFHQDQIHFLV-VH----ETQLAIFETTKLEC--VKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus       936 ~~~~~~~v~~~~~spdg~~l~~-~~----d~~i~iwd~~~~~~--~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
                           ..+....+ ++|. ++. +.    ++.|.+||+.+++.  ...+....+...+..++|+ ++.++++...|+..+
T Consensus       272 -----~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~  343 (695)
T 2bkl_A          272 -----GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSE  343 (695)
T ss_dssp             -----SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred             -----CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEE
Confidence                 13455555 6777 554 43    47899999987653  1233322225568889998 788899999999988


Q ss_pred             EEEcC-CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEE-EEe---cCCcEEEEeccCCC
Q 001311         1009 VFSAA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA-LGL---SDGGVHVFEPLESE 1069 (1102)
Q Consensus      1009 vwd~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~-s~~---~Dg~v~vW~~~~~~ 1069 (1102)
                      ||.++ +++....+.    ++.   ...+.  .+.++| |+..++ +.+   ..++|++||+.+++
T Consensus       344 l~~~~~~g~~~~~l~----~~~---~~~v~--~~~~s~-d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          344 VRVATLKGKPVRTVQ----LPG---VGAAS--NLMGLE-DLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEETTCCEEEECC----CSS---SSEEC--CCBSCT-TCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEeCCCCeeEEec----CCC---CeEEE--EeecCC-CCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88765 455555554    221   11133  677888 455555 333   34789999998877

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=1.3e-08  Score=126.57  Aligned_cols=559  Identities=9%  Similarity=0.050  Sum_probs=309.4

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc--CCCeEE
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP--DGSLFG  424 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~la  424 (1102)
                      ..|.++...++|.. |-.|+.++-+..||..+++..... ..     .    ..  ...-....|.++....  +|.+. 
T Consensus        66 n~I~~i~~d~~g~~-lWigt~~~Gl~~~d~~~~~f~~~~-~~-----~----~~--~~~l~~~~i~~i~~d~~~~g~lw-  131 (781)
T 3v9f_A           66 NELNEVYTDPVQPV-IWIATQRAGLNAYNYETQSFSVYQ-YN-----P----ED--PQSLITNDVTHITSSVQAGKGLW-  131 (781)
T ss_dssp             SCEEEEEECSSSSE-EEEEESSSCEEEEETTTTEEEEEC-CC-----T----TC--SSSCSCSCEEEEEECSSTTSEEE-
T ss_pred             cccceEEEcCCCCE-EEEEeCCCCcceECCCCCeEEeec-cc-----c----CC--CCCcccCcceEEEecCccCCCEE-
Confidence            46999999999973 334566657999999876543310 00     0    00  0001124689998887  66654 


Q ss_pred             EEECCCeEEEEEccCCceeeeEEE--ee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec------
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLE--ID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG------  495 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~--l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~------  495 (1102)
                      .++.++-|..||..+++... ...  .. -....|.++...+++.   |..+..++-|..||..+++.......      
T Consensus       132 i~t~~~gl~~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~  207 (781)
T 3v9f_A          132 VCTYYRGIEYLDIATGKFTH-YNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQNPNS  207 (781)
T ss_dssp             EEESSSCEEEEETTTTEEEE-ESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC-------
T ss_pred             EEECCCCeeEEECCCCeEEe-eccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCCCccc
Confidence            45545558889987765322 100  00 1134688888887876   44455555688999887765432110      


Q ss_pred             -CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311          496 -HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  574 (1102)
Q Consensus       496 -h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  574 (1102)
                       ....|.++..  +.++.+ ..|+.+ -|.+||..+..... +......             ........+.++...++|
T Consensus       208 l~~~~i~~i~~--d~~g~l-wigt~~-Gl~~~d~~~~~~~~-~~~~~~~-------------~~~l~~~~i~~i~~d~~g  269 (781)
T 3v9f_A          208 LPGNDVRCIYK--DTNGNI-WIGTSK-GLALFNANTETFTN-FHNNPGN-------------IHGALSSYIFSIKQLKDN  269 (781)
T ss_dssp             -CCSSEEEEEE--CTTCCE-EEEETT-EEEEEETTTTEEEC-------------------------CCCCEEEEEECTTS
T ss_pred             CCCCceeEEEE--cCCCCE-EEEeCC-cHheECCCCCcEEE-EEcCCCc-------------cccccCceEEEEEECCCC
Confidence             1345777764  455544 445544 68888876532211 1100000             000111244555555554


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEc-------CC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQLLTSID-------AD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  642 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  642 (1102)
                      . |..|+..+-|.++|..++.......       ..     -....|.++...++|.+. +|+.++-|..++..+. . +
T Consensus       270 ~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~-~-~  345 (781)
T 3v9f_A          270 K-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGGINFISNAPP-T-F  345 (781)
T ss_dssp             E-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCC-S-C
T ss_pred             C-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCC-c-c
Confidence            4 5556665678889987765432211       00     012357788888888755 4666677888876543 1 1


Q ss_pred             eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                      ..+......                                                                       
T Consensus       346 ~~~~~~~~~-----------------------------------------------------------------------  354 (781)
T 3v9f_A          346 HTWSYSPTQ-----------------------------------------------------------------------  354 (781)
T ss_dssp             EEEC----C-----------------------------------------------------------------------
T ss_pred             eeeccCccc-----------------------------------------------------------------------
Confidence            111000000                                                                       


Q ss_pred             CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                         ....      ......|.++...++|. |..++.++-+..|+.....+                      .......
T Consensus       355 ---~~~~------~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~----------------------~~~~~~~  402 (781)
T 3v9f_A          355 ---MNES------SLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA----------------------IYNKENR  402 (781)
T ss_dssp             ---CCSS------CCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE----------------------ECC----
T ss_pred             ---cccC------CCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE----------------------EEccCCC
Confidence               0000      01235688888888887 55566555577776532211                      0000000


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeec--CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          803 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM--PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~--~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                      ......|.+++..+++.+.+...++.|..++..+++......  .....|.++...+ ++++.+ |+. +-|..||..++
T Consensus       403 ~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~  479 (781)
T 3v9f_A          403 ELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASK  479 (781)
T ss_dssp             -CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSS
T ss_pred             CCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCC
Confidence            113567899998888877664446789999987765433221  2345789998887 665444 555 55888998776


Q ss_pred             eeeeeeccc-----cccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311          881 EVKSKLKGH-----SKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  955 (1102)
Q Consensus       881 ~~~~~l~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  955 (1102)
                      +........     ...|.++...++|.+.+....+| |..||..+++..   ....  ........|.++...++|.+.
T Consensus       480 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~---~~~~--~~~l~~~~i~~i~~d~~g~lW  553 (781)
T 3v9f_A          480 KVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR---KFNQ--YEGFCSNTINQIYRSSKGQMW  553 (781)
T ss_dssp             SCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE---EECT--TTTCSCSCEEEEEECTTSCEE
T ss_pred             eEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE---EccC--CCCCCCCeeEEEEECCCCCEE
Confidence            543322211     45788999988888766544355 788887764321   1111  111223567889999999877


Q ss_pred             EEEeCCeEEEEEcCCceEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCC
Q 001311          956 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1034 (1102)
Q Consensus       956 ~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1034 (1102)
                      +...+|-+..||..+++....-...+ ....|.++...++|.+.++ +.+| |..|+..+++.. .+....-++..    
T Consensus       554 i~T~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~~----  626 (781)
T 3v9f_A          554 LATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQG----  626 (781)
T ss_dssp             EEETTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTTTEEE-EECGGGTCCSS----
T ss_pred             EEECCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCCCceE-EecccCCcccc----
Confidence            76665544889988776433211111 1456889999999986664 4455 777888776553 34322222211    


Q ss_pred             cccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1035 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1035 ~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      ....-++...+ +|. |..|+.+| +..++...
T Consensus       627 ~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~  656 (781)
T 3v9f_A          627 SFISGCVTKDH-NGL-IYFGSING-LCFFNPDI  656 (781)
T ss_dssp             CEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred             ccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence            12112444444 454 55566676 56667654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.52  E-value=2.1e-08  Score=124.66  Aligned_cols=574  Identities=13%  Similarity=0.100  Sum_probs=314.6

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      ...|.+|.-..+|.  |-.|+.+| +..+|-.+   ..     .+.....  +..  ...-....|.++...++|..|-+
T Consensus        18 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~---f~-----~~~~~~~--~~~--~~~l~~n~I~~i~~d~~g~~lWi   82 (781)
T 3v9f_A           18 NNYVLSITQDKQGF--LWFATEEG-LNKFDGTR---FI-----TYYKEEQ--SSS--VQSITGNELNEVYTDPVQPVIWI   82 (781)
T ss_dssp             CSBEEEEEECTTSC--EEEEESSC-EEEECSSS---EE-----EECCCSS--CSS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred             cCEeEEEEECCCCC--EEEccCCc-CccccCCc---eE-----EEEcCCC--CCc--cccccccccceEEEcCCCCEEEE
Confidence            46899999999997  55566655 56677432   11     1111000  000  00011346999999998884556


Q ss_pred             EECCCeEEEEEccCCceeeeEEE-eec---cccCEEEEEEcC--CCCeeEEEEecCCCcEEEEeCCCCeeeEEee-----
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLE-IDA---HVGGVNDIAFSH--PNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----  494 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~-l~~---h~~~V~~v~~s~--d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-----  494 (1102)
                      |+.++-+..||..+++....... ...   ....|.+|....  ++.   |..+..++.|..+|..+++......     
T Consensus        83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~  159 (781)
T 3v9f_A           83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA  159 (781)
T ss_dssp             EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred             EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence            77775699999987653221000 000   123688888877  665   4445544568899987776543211     


Q ss_pred             cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311          495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  574 (1102)
Q Consensus       495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  574 (1102)
                      -....|.++..  +.++ .|..++.++-|..||..+.... .+...          +..   ........+.++..++++
T Consensus       160 l~~~~i~~i~~--d~~g-~lwigt~~~Gl~~~~~~~~~~~-~~~~~----------~~~---~~~l~~~~i~~i~~d~~g  222 (781)
T 3v9f_A          160 LPSEQTWTATE--AEDG-KLYIGHVEGGLSILSLNDKSVK-HFVHD----------PQN---PNSLPGNDVRCIYKDTNG  222 (781)
T ss_dssp             CSCCCEEEEEE--EETT-EEEEEETTTEEEEEETTTTEEE-EECC---------------------CCSSEEEEEECTTC
T ss_pred             CCccceEEEEE--CCCC-CEEEEecCCCeEEEcCCCCceE-eeecC----------CCC---cccCCCCceeEEEEcCCC
Confidence            11245776664  3343 4555666656888887653221 11100          000   000011245555566665


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccc
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLA  649 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  649 (1102)
                      ...+ ++.+ -|.+||..+++........     -....|.++...++|.+.+ |+..+-|.+++..+. ... .+... 
T Consensus       223 ~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-~~~-~~~~~-  296 (781)
T 3v9f_A          223 NIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQN-QFL-LPEQI-  296 (781)
T ss_dssp             CEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC-----------
T ss_pred             CEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCC-eee-eeecc-
Confidence            5444 4545 6899998776543221111     1123578888888876554 666567888887654 111 00000 


Q ss_pred             ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccc
Q 001311          650 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  729 (1102)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~  729 (1102)
                                  .|..                                                     +..   .....
T Consensus       297 ------------~f~~-----------------------------------------------------~~~---~~~~~  308 (781)
T 3v9f_A          297 ------------RFEF-----------------------------------------------------IRE---GDNNY  308 (781)
T ss_dssp             -------------CEE-----------------------------------------------------ECB---CSSTT
T ss_pred             ------------cccc-----------------------------------------------------ccC---CCCCC
Confidence                        0000                                                     000   00000


Q ss_pred             cccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCe
Q 001311          730 SLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAV  809 (1102)
Q Consensus       730 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i  809 (1102)
                            ......|.++...++|. |-.++.++-|..++.....+            ..+......    .....-....|
T Consensus       309 ------~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~~~~~----~~~~~l~~~~v  365 (781)
T 3v9f_A          309 ------SLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF------------HTWSYSPTQ----MNESSLSNKVV  365 (781)
T ss_dssp             ------SBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC------------EEEC----C----CCSSCCSSSCE
T ss_pred             ------CCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc------------eeeccCccc----cccCCCCCcce
Confidence                  11346788999999887 55566565666666432211            001000000    00000134568


Q ss_pred             eEEEEecCCCeEEEEeCCeEEEEEcCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee
Q 001311          810 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL  886 (1102)
Q Consensus       810 ~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l  886 (1102)
                      .+++..++|.+.+...++.|..|+..++......   ......|.++...+ ++++.+ |+.++-|..||..+++.....
T Consensus       366 ~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~  443 (781)
T 3v9f_A          366 SSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIE  443 (781)
T ss_dssp             EEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECC
T ss_pred             EEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEec
Confidence            9999988887665554677999998754332211   12345688898887 665554 777777999998776543322


Q ss_pred             c--cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEE
Q 001311          887 K--GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLA  964 (1102)
Q Consensus       887 ~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~  964 (1102)
                      .  .....|.++...++|.+.+.. .. -|.+||..+++....   ............|.++...++|.+.+...++.|.
T Consensus       444 ~~~~~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~---~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~  518 (781)
T 3v9f_A          444 LEKNELLDVRVFYEDKNKKIWIGT-HA-GVFVIDLASKKVIHH---YDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVG  518 (781)
T ss_dssp             STTTCCCCEEEEEECTTSEEEEEE-TT-EEEEEESSSSSCCEE---ECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEE
T ss_pred             cCCCCCCeEEEEEECCCCCEEEEE-CC-ceEEEeCCCCeEEec---ccCcccccccceeEEEEEcCCCCEEEEEcCCCEE
Confidence            1  234678889888887665544 44 488999877543221   1111111112467889999999987776656688


Q ss_pred             EEEcCCceEeeeeccC-CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEe
Q 001311          965 IFETTKLECVKQWVPR-ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1043 (1102)
Q Consensus       965 iwd~~~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f 1043 (1102)
                      .||..+++........ -....|.++...++|.+.++. .+|.|..||..+++.. .+....-++.    ..+.  ++..
T Consensus       519 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~-~~~~~~gl~~----~~i~--~i~~  590 (781)
T 3v9f_A          519 IYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQ-VFQRKEGLPN----THIR--AISE  590 (781)
T ss_dssp             EECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCE-EECGGGTCSC----CCCC--EEEE
T ss_pred             EEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEE-EccccCCCCC----ceEE--EEEE
Confidence            8998777654332111 124678999999999866644 4776688998877643 3332222222    2244  6766


Q ss_pred             cCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1044 HPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1044 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      .+ +|.+.++ +. +.|..++..+..
T Consensus       591 d~-~g~lW~~-t~-~Gl~~~~~~~~~  613 (781)
T 3v9f_A          591 DK-NGNIWAS-TN-TGISCYITSKKC  613 (781)
T ss_dssp             CS-SSCEEEE-CS-SCEEEEETTTTE
T ss_pred             CC-CCCEEEE-cC-CceEEEECCCCc
Confidence            66 4555444 43 446667765443

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.52  E-value=3.3e-12  Score=138.77  Aligned_cols=234  Identities=8%  Similarity=-0.035  Sum_probs=162.4

Q ss_pred             CCCCeeEEEEecCCC-eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311          805 PEEAVPCFALSKNDS-YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  882 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~-~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  882 (1102)
                      +.....+++|+|+++ +++++. ++.|..|+..++  ...+..+...+.++++++ +++++++...++.|.+||..+++.
T Consensus        26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~-dg~l~v~~~~~~~i~~~d~~~g~~  102 (296)
T 3e5z_A           26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNK-QGHLIACSHGLRRLERQREPGGEW  102 (296)
T ss_dssp             CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECT-TCCEEEEETTTTEEEEECSTTCCE
T ss_pred             CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECC-CCcEEEEecCCCeEEEEcCCCCcE
Confidence            345578999999998 566666 799999999887  566666778899999999 888888777778999999977765


Q ss_pred             eeeeccc----cccceeEEEecCCCEEEEEcC-----------------CCcEEEEEcCCCcccceeeeecCCCCCCCCC
Q 001311          883 KSKLKGH----SKRITGLAFSHALNVLVSSGA-----------------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQ  941 (1102)
Q Consensus       883 ~~~l~~h----~~~V~~l~~s~d~~~l~s~s~-----------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  941 (1102)
                      .......    ...+.+++++|+|+++++.+.                 .+.|..++.. ++.   ...  .. ..   .
T Consensus       103 ~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~---~~~--~~-~~---~  172 (296)
T 3e5z_A          103 ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL---SAP--IR-DR---V  172 (296)
T ss_dssp             EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE---EEE--EC-CC---S
T ss_pred             EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE---EEe--ec-CC---C
Confidence            4333221    235678999999999987431                 2344444443 221   111  11 11   2


Q ss_pred             CCcEEEEccCCcEEEEE-eCCeEEEEEcC-CceE---eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311          942 SDTRVQFHQDQIHFLVV-HETQLAIFETT-KLEC---VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus       942 ~v~~~~~spdg~~l~~~-~d~~i~iwd~~-~~~~---~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
                      ....++|+|||+.+++. .++.|.+|++. +++.   ...+  ..+...+..++++++|+++++.  ++.|.+||.+ ++
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~  247 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GD  247 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SC
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CC
Confidence            45789999999998554 56899999997 5554   3333  2456677899999999977666  8899999986 77


Q ss_pred             eEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCC
Q 001311         1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                      .+..+.    .+.+       +.+++|...|++.|.+++.+ .+.-++..+.
T Consensus       248 ~~~~~~----~~~~-------~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~  287 (296)
T 3e5z_A          248 ELGRVL----TPQT-------TSNLCFGGPEGRTLYMTVST-EFWSIETNVR  287 (296)
T ss_dssp             EEEEEE----CSSC-------CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred             EEEEEE----CCCC-------ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence            776665    2211       33788953367778877765 3444444443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.50  E-value=4.7e-11  Score=129.73  Aligned_cols=237  Identities=11%  Similarity=0.079  Sum_probs=163.8

Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      ..+..++++++|..+++...++.|..|+..                       +......+.  .....+..++++++++
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-----------------------g~~~~~~~~--~~~~~~~~i~~~~~g~  111 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK-----------------------GIIKEYTLP--NPDSAPYGITEGPNGD  111 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECS--STTCCEEEEEECTTSC
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC-----------------------CcEEEEeCC--CcCCCceeeEECCCCC
Confidence            457789999999877776667888888742                       111111111  1345688999999998


Q ss_pred             eEEEEe-CCeEEEEEcCCCceeee-ecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee-eccccccceeE
Q 001311          820 YVMSAS-GGKISLFNMMTFKTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK-LKGHSKRITGL  896 (1102)
Q Consensus       820 ~las~s-dg~I~iwd~~~~~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~-l~~h~~~V~~l  896 (1102)
                      ++++.. ++.|.+||. +++.... ...+...+..+++++ +++++++...++.|.+||. +++.... +..+...+.++
T Consensus       112 l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i  188 (299)
T 2z2n_A          112 IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGI  188 (299)
T ss_dssp             EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred             EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeE
Confidence            887776 789999998 5544332 333456789999999 7888877777789999998 6655432 33345568899


Q ss_pred             EEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEee
Q 001311          897 AFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVK  975 (1102)
Q Consensus       897 ~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~  975 (1102)
                      ++.++|++.++...++.|.+||. +++...   ..... .   ...+..++++++|+..++. .++.|..||. +++. .
T Consensus       189 ~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~  258 (299)
T 2z2n_A          189 TKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIPT-P---NARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-E  258 (299)
T ss_dssp             EECTTSSEEEEETTTTEEEEECT-TCCEEE---EECSS-T---TCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-E
T ss_pred             EECCCCCEEEEccCCceEEEECC-CCcEEE---EECCC-C---CCCceeEEECCCCCEEEeccCCceEEEECC-CCce-E
Confidence            99999998888777889999998 544221   11111 1   1357899999999977665 6789999998 4543 3


Q ss_pred             eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311          976 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus       976 ~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
                      .+....+...+.++++ ++|+++++.+ .+.|..++..+++
T Consensus       259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            3333344678999999 8888777655 5677777876654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.50  E-value=6e-13  Score=163.22  Aligned_cols=248  Identities=11%  Similarity=-0.035  Sum_probs=159.7

Q ss_pred             CCCCeeEEEEecCCCeEEEEE----ecCCeEEEEeCCCCeeE-EeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          345 QGSSPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERL-VLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg----~~d~~i~iWd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      |...+.+++|||||++|+++.    +.+.+|++||+.+++.+ ..                  .+...  ....++||||
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD  178 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD  178 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence            556789999999999855443    33468999999998753 10                  01111  1267999999


Q ss_pred             CCeEEEEECCCe-------------EEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCC----cEEE
Q 001311          420 GSLFGVAYSRHI-------------VQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDK----TIKV  481 (1102)
Q Consensus       420 g~~las~~~d~~-------------v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~----~i~v  481 (1102)
                      |+.|+.++.|..             |++|++.++... ..+.....|...+..+.|+|||+.  |+.++.++    .|++
T Consensus       179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~  256 (695)
T 2bkl_A          179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW  256 (695)
T ss_dssp             SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred             CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence            999999998776             999999987632 222233456678999999999995  44444444    6777


Q ss_pred             EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEe---CCCeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCcee
Q 001311          482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA---LDGKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT  556 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s---~dg~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~  556 (1102)
                      ||..+++ ...+..+...+....+   ++|.+++...   .++.|.+||+.++..  ...+..+.               
T Consensus       257 ~~~~~~~-~~~l~~~~~~~~~~~~---~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---------------  317 (695)
T 2bkl_A          257 KRPGEKD-FRLLVKGVGAKYEVHA---WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPED---------------  317 (695)
T ss_dssp             ECTTCSS-CEEEEECSSCCEEEEE---ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCC---------------
T ss_pred             EcCCCCc-eEEeecCCCceEEEEe---cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCC---------------
Confidence            7765554 4445556555655554   2334444444   258899999877542  12221111               


Q ss_pred             eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC-CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC----CCcEE
Q 001311          557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD-SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----DNGIK  631 (1102)
Q Consensus       557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----dg~i~  631 (1102)
                          ....+..++++ ++..+++...|+..++|.+. +++....+..+. ...+..++++|++..++....    .++|+
T Consensus       318 ----~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~  391 (695)
T 2bkl_A          318 ----SSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIY  391 (695)
T ss_dssp             ----SSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEE
T ss_pred             ----CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEE
Confidence                01123333444 33567778889988888654 455555554331 235677889999987774433    47899


Q ss_pred             EEEccCCc
Q 001311          632 ILATSDGI  639 (1102)
Q Consensus       632 iwd~~~~~  639 (1102)
                      +||+.++.
T Consensus       392 ~~d~~~g~  399 (695)
T 2bkl_A          392 KTSVSTGK  399 (695)
T ss_dssp             EEETTTCC
T ss_pred             EEECCCCc
Confidence            99998773

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.49  E-value=3.8e-12  Score=136.17  Aligned_cols=239  Identities=10%  Similarity=0.046  Sum_probs=167.4

Q ss_pred             CeeEEEEecCCCeEE-EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311          808 AVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       808 ~i~~l~~s~d~~~la-s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      ...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|++||..+......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence            678999999999776 434 78999999866543322233345688999999 788666555 88999999776543222


Q ss_pred             eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEE
Q 001311          886 LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLA  964 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~  964 (1102)
                      .......+.+++++++|+++++...++.|.+|+..+....    .....+    ...+..++++++|+++++. .++.|.
T Consensus       103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~----~~~~~~----~~~p~~i~~~~~g~l~v~~~~~~~i~  174 (270)
T 1rwi_B          103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTG----LNDPDGVAVDNSGNVYVTDTDNNRVV  174 (270)
T ss_dssp             CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCE----ECCCCS----CCSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred             ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeE----eecccc----CCCceeEEEeCCCCEEEEECCCCEEE
Confidence            2223356889999999998888888889999976543221    111111    1256889999999977665 578999


Q ss_pred             EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEec
Q 001311          965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAH 1044 (1102)
Q Consensus       965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~ 1044 (1102)
                      +||..+........  .+...+.+++++++|.++++...++.|.+|+..+..... +.     ..+    ...+.+++++
T Consensus       175 ~~~~~~~~~~~~~~--~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----~~~----~~~p~~i~~~  242 (270)
T 1rwi_B          175 KLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----FTG----LNTPLAVAVD  242 (270)
T ss_dssp             EECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----CCS----CSCEEEEEEC
T ss_pred             EEecCCCceEeecc--cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----cCC----CCCceeEEEC
Confidence            99998776544322  234678999999999887877778999999987654432 11     011    0234589999


Q ss_pred             CCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1045 PQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1045 p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      + +++++++...++.|+++++...+
T Consensus       243 ~-~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          243 S-DRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             T-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred             C-CCCEEEEECCCCEEEEEcCCCcc
Confidence            8 57899999999999999997765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.49  E-value=5.9e-12  Score=134.66  Aligned_cols=239  Identities=8%  Similarity=0.030  Sum_probs=163.2

Q ss_pred             CeeEEEEecCCCeEEE-EEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311          348 SPMSMDFHPVQQTLLL-VGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  426 (1102)
Q Consensus       348 ~v~~v~~spdg~~lla-sg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  426 (1102)
                      ...+++++|+|+ +++ +.+.++.|.+||..++....                   ....+...+.+++++++|+++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence            789999999998 566 55778999999976554322                   112334568899999999966666


Q ss_pred             ECCCeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEee
Q 001311          427 YSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP  505 (1102)
Q Consensus       427 ~~d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~  505 (1102)
                      . ++.|.+||..++....    +. .....+.+++++++|.  ++++...++.|.+|+..+.............+.++++
T Consensus        85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            5 8899999988754321    22 2335789999999998  6777777889999986665544333333345667776


Q ss_pred             eecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCe
Q 001311          506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS  585 (1102)
Q Consensus       506 ~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~  585 (1102)
                        +++|.++++...++.|.+||..............                     .....++++++|..+++...++.
T Consensus       158 --~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~---------------------~~p~~i~~d~~g~l~v~~~~~~~  214 (270)
T 1rwi_B          158 --DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDI---------------------TAPWGIAVDEAGTVYVTEHNTNQ  214 (270)
T ss_dssp             --CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSC---------------------CSEEEEEECTTCCEEEEETTTSC
T ss_pred             --eCCCCEEEEECCCCEEEEEecCCCceEeecccCC---------------------CCceEEEECCCCCEEEEECCCCc
Confidence              4566777777778899999987543222111111                     23455666776666666667889


Q ss_pred             EEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          586 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       586 i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      |.+|+........ .. ..+...+.+++++++|+++++...++.|++++....
T Consensus       215 v~~~~~~~~~~~~-~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          215 VVKLLAGSTTSTV-LP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             EEEECTTCSCCEE-CC-CCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred             EEEEcCCCCccee-ec-cCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence            9999987654332 22 122235788999999998888888999999987655

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.49  E-value=7.2e-12  Score=136.89  Aligned_cols=280  Identities=9%  Similarity=0.039  Sum_probs=187.2

Q ss_pred             EEEccCCceEEEeec-----CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          745 LIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       745 ~~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      ....|+++.+++...     ++.+.+.|.                      .+++++.....+   ..+  .++++|||+
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~----------------------~t~~v~~~I~vG---~~P--~va~spDG~   90 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDG----------------------EAGRVIGMIDGG---FLP--NPVVADDGS   90 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEET----------------------TTTEEEEEEEEC---SSC--EEEECTTSS
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEEC----------------------CCCeEEEEEECC---CCC--cEEECCCCC
Confidence            345688888777765     466776664                      344433322211   222  399999999


Q ss_pred             eEEEEe-----------CCeEEEEEcCCCceeeeecCCC-------CCeeEEEEecCCCcEEEEEeC--CCcEEEEEeec
Q 001311          820 YVMSAS-----------GGKISLFNMMTFKTMATFMPPP-------PAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRV  879 (1102)
Q Consensus       820 ~las~s-----------dg~I~iwd~~~~~~~~~~~~~~-------~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~  879 (1102)
                      +++++.           ++.|.+||..+++.+.++....       .....++|+| ||++|+++..  ++.|.++|+.+
T Consensus        91 ~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t  169 (386)
T 3sjl_D           91 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEG  169 (386)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTT
T ss_pred             EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCC
Confidence            887764           4679999999999888875321       2467899999 8888887764  68999999999


Q ss_pred             ceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCC-CcccceeeeecCCCCCCCCCCC-cEEEEc-cCCcEEE
Q 001311          880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSD-TRVQFH-QDQIHFL  956 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v-~~~~~s-pdg~~l~  956 (1102)
                      ++.+.++.-...   ...+....+.+++.+.||++.+.++.+ ++..... .....   .....+ ....|. ++|+++.
T Consensus       170 ~~vv~tI~v~g~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~-~~~~~---~~~~~~~~~~~~~~~dG~~~~  242 (386)
T 3sjl_D          170 KAFKRMLDVPDC---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITH-TEVFH---PEDEFLINHPAYSQKAGRLVW  242 (386)
T ss_dssp             TEEEEEEECCSE---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEE-CCCCS---CTTSCBCSCCEEETTTTEEEE
T ss_pred             CcEEEEEECCCc---ceeecCCCceeEEECCCCCEEEEECCCCCeEEEee-cceec---cccccccccceeEcCCCcEEE
Confidence            999888753211   233444456777888899998888876 4432111 01111   000122 224664 7898888


Q ss_pred             EEeCCeEEEEEcCCce--Eeeeecc--------CCCCCCeeEEEEcCCCcEEEEEeC----------CCeEEEEEcCCce
Q 001311          957 VVHETQLAIFETTKLE--CVKQWVP--------RESSAPITHATFSCDSQLVYACFL----------DATVCVFSAANLK 1016 (1102)
Q Consensus       957 ~~~d~~i~iwd~~~~~--~~~~~~~--------~~h~~~v~~l~~spd~~~l~s~s~----------Dg~I~vwd~~~~~ 1016 (1102)
                      ++.++.|++.|..+..  .+..+..        .-.......++++++++.|+.+..          ...|.+.|+.+++
T Consensus       243 vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k  322 (386)
T 3sjl_D          243 PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE  322 (386)
T ss_dssp             EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe
Confidence            8888999999997654  3333320        001223456788999999888754          2579999999999


Q ss_pred             eEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE-ecCCcEEEEeccCCCc
Q 001311         1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESEG 1070 (1102)
Q Consensus      1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~-~~Dg~v~vW~~~~~~~ 1070 (1102)
                      .+.++.    +...     .+  ++.++++...+|++. ..++.|.++|..+++.
T Consensus       323 v~~~i~----vg~~-----~~--~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~  366 (386)
T 3sjl_D          323 RLAKFE----MGHE-----ID--SINVSQDEKPLLYALSTGDKTLYIHDAESGEE  366 (386)
T ss_dssp             EEEEEE----EEEE-----EC--EEEECSSSSCEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEE----CCCC-----cc--eEEECCCCCeEEEEEcCCCCeEEEEECCCCcE
Confidence            999987    3222     44  899999533366554 5589999999999883

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.47  E-value=3.2e-11  Score=134.52  Aligned_cols=206  Identities=12%  Similarity=0.081  Sum_probs=142.6

Q ss_pred             eeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311          809 VPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      ...++++|||++++++.   ++.|.+.|+.+++.+.++....  .  ....|++.+.+++.+.||.+.+.+..+++....
T Consensus       179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~  254 (426)
T 3c75_H          179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFADGETKVT  254 (426)
T ss_dssp             GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred             cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence            34567888888888765   3689999999999888876422  1  334443446666677888888888865554422


Q ss_pred             ----eccccccc-eeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC----CCCCCCcEEEEccCCcEEE
Q 001311          886 ----LKGHSKRI-TGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT----PTAQSDTRVQFHQDQIHFL  956 (1102)
Q Consensus       886 ----l~~h~~~V-~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~spdg~~l~  956 (1102)
                          +.....++ ..+.|++++..++..+..+.|.+.|+.+................    ........+++++|++++.
T Consensus       255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly  334 (426)
T 3c75_H          255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY  334 (426)
T ss_dssp             ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred             eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence                22112222 24678999988887788899999998764422111111110000    0001234579999999888


Q ss_pred             EEe-----------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCc-EEEEEe-CCCeEEEEEcCCceeEEEe
Q 001311          957 VVH-----------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQ-LVYACF-LDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       957 ~~~-----------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~-~l~s~s-~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
                      +..           .+.|.++|..+.+.+..+...   .....++|+|||+ +|+++. .++.|.|+|+.+++.+.++
T Consensus       335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg---~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELG---HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             EEecccccccccCCCCEEEEEECCCCeEEEEEECC---CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            752           247999999999999988742   3689999999999 888888 5899999999999999887

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=1e-10  Score=130.23  Aligned_cols=237  Identities=11%  Similarity=0.030  Sum_probs=162.6

Q ss_pred             EEEEecCCCeEEEEe-----------CCeEEEEEcCCCceeeeecCC-------CCCeeEEEEecCCCcEEEEEeC--CC
Q 001311          811 CFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPP-------PPAATFLAFHPQDNNIIAIGMD--DS  870 (1102)
Q Consensus       811 ~l~~s~d~~~las~s-----------dg~I~iwd~~~~~~~~~~~~~-------~~~i~~l~~sp~d~~~lasg~~--dg  870 (1102)
                      .++++|||++++++.           ++.|.+||..+.+.+.++...       ......++|+| |+++|+++..  ++
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~sp-DG~~l~v~n~~~~~  148 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGP  148 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECC-CCCEEEEEecCCCC
Confidence            899999999998874           467999999998887776432       12356899999 8999888874  57


Q ss_pred             cEEEEEeecceeeee-eccccccceeEEEecCC-CEEEEEcCCCcEEEEEcCCCcccceeee-ecCCCCCCCCCCCcEEE
Q 001311          871 SIQIYNVRVDEVKSK-LKGHSKRITGLAFSHAL-NVLVSSGADSQLCVWSSDGWEKQKNRFL-QIPTGRTPTAQSDTRVQ  947 (1102)
Q Consensus       871 ~v~vwd~~~~~~~~~-l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~  947 (1102)
                      .|.++| .+++.+.. +....    ++.+.+++ +.+++.+.||.+.++|. +++....... ....+..   .-.....
T Consensus       149 ~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~---p~~~~~~  219 (373)
T 2mad_H          149 AVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQ---NLLTQPA  219 (373)
T ss_pred             eEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCc---ceeecce
Confidence            899999 99988877 54321    24555665 45677788999999999 6654311100 0011110   0112345


Q ss_pred             EccCCcE-EEEEeCCeEEEEEcCCce--EeeeeccCC--------CCCCeeEEEEcCCCcEEEEEeC----------CCe
Q 001311          948 FHQDQIH-FLVVHETQLAIFETTKLE--CVKQWVPRE--------SSAPITHATFSCDSQLVYACFL----------DAT 1006 (1102)
Q Consensus       948 ~spdg~~-l~~~~d~~i~iwd~~~~~--~~~~~~~~~--------h~~~v~~l~~spd~~~l~s~s~----------Dg~ 1006 (1102)
                      +.+++.. ++++.++.+.+.|+.++.  .+..+....        .......++++||++.|+++..          ++.
T Consensus       220 ~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~  299 (373)
T 2mad_H          220 QANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE  299 (373)
T ss_pred             eEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCe
Confidence            6676554 444677889999987653  223222100        1223445889999998887654          357


Q ss_pred             EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEe-cCCcEEEEeccCCC
Q 001311         1007 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPLESE 1069 (1102)
Q Consensus      1007 I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~-~Dg~v~vW~~~~~~ 1069 (1102)
                      |.++|..+++.+.++.    .+.       .+..+.|+| |++ +++++. .++.|.|||+.+.+
T Consensus       300 V~VID~~t~~vv~~i~----~g~-------~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~  352 (373)
T 2mad_H          300 VTSVTGLVGQTSSQIS----LGH-------DVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGD  352 (373)
T ss_pred             EEEEECCCCEEEEEEE----CCC-------CcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCC
Confidence            9999999999999886    221       233799999 567 677776 58999999999988

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.45  E-value=1.4e-11  Score=131.22  Aligned_cols=234  Identities=12%  Similarity=0.096  Sum_probs=167.0

Q ss_pred             EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCC-CCeEEEEEccCCCeEEEEECCCeEEEEEccC
Q 001311          361 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG-VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHG  439 (1102)
Q Consensus       361 llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~spdg~~las~~~d~~v~vwd~~~  439 (1102)
                      +|++++.|+.|.+||.++|+.+..                   +..+. ..+.+++++|+|++|+  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence            699999999999999999998864                   23333 4688999999999999  45788999999 7


Q ss_pred             CceeeeEEEeecc-ccCEEEEEEcCCCCeeEEEEecC-CCcEEEEeCCCCeeeEEeec------CCCCeEEEeeeecCCc
Q 001311          440 GDEVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCGD-DKTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENI  511 (1102)
Q Consensus       440 ~~~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~~-d~~i~vWd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~  511 (1102)
                      |+.+..   +..+ ...+.++.+.+||+  ++++.+. ++.|..+|. +|+.+..+..      +......+.  ...+|
T Consensus        65 G~~~W~---~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~--~~~~G  136 (276)
T 3no2_A           65 GRELWN---IAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN--KNKKG  136 (276)
T ss_dssp             SCEEEE---EECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE--ECTTS
T ss_pred             CCEEEE---EcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce--ECCCC
Confidence            776654   3333 34788999999999  6777766 778888884 8888877642      112233333  35778


Q ss_pred             cEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEEC
Q 001311          512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM  591 (1102)
Q Consensus       512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~  591 (1102)
                      +++++...++.|..||.. ++.+..+....                      ....+...++++.+++++.++.|..+|.
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~----------------------~~~~~~~~~~g~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG----------------------TPFSSAFLDNGDCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECSS----------------------CCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred             CEEEEecCCCEEEEECCC-CCEEEEEECCC----------------------CccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence            899999999999999987 67666655431                      1223444556677888888889999999


Q ss_pred             CCcceEEEEcCCC----CCCCcCeEEEcCCCCEEEEEECC--------CcEEEEEccCCccceeeccc
Q 001311          592 DSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTND--------NGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       592 ~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~  647 (1102)
                      .+|+.+..+....    ....+..+...++|..+++....        +..+++.+....+.+-.+..
T Consensus       194 ~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~  261 (276)
T 3no2_A          194 ESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLND  261 (276)
T ss_dssp             TTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECC
T ss_pred             cCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecC
Confidence            9999998886332    12235678889999988887521        23456666333255544443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.40  E-value=2.9e-11  Score=149.30  Aligned_cols=242  Identities=13%  Similarity=0.086  Sum_probs=159.1

Q ss_pred             CCeeEEEEecCCCeEEEEe-C-C----eEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCc---------
Q 001311          807 EAVPCFALSKNDSYVMSAS-G-G----KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSS---------  871 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-d-g----~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~---------  871 (1102)
                      ..+..++|||||++||.+. + |    +|++||+.+++.+.... +...+..++|+| | +.|+.+..++.         
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wsp-D-~~l~~~~~~~~~~~~~~~~~  239 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLG-N-DALLYSRFAEPKEGQAFQAL  239 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE-EEEESCCCEEST-T-SEEEEEECCCC--------C
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC-CCceeccEEEEC-C-CEEEEEEecCcccccccccC
Confidence            4678899999999999876 2 3    59999999988754311 122236789999 7 88887776654         


Q ss_pred             -----EEEEEeecce----eeeeeccccccceeEEEecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCC
Q 001311          872 -----IQIYNVRVDE----VKSKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRT  937 (1102)
Q Consensus       872 -----v~vwd~~~~~----~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~  937 (1102)
                           |++|++.++.    ++.....|...+.++.|||||++|+..+.++     .|++||+.++.......+....   
T Consensus       240 ~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---  316 (741)
T 1yr2_A          240 NYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDL---  316 (741)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSS---
T ss_pred             CCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCC---
Confidence                 8999987654    3333333444588999999999998877543     7999999876211011222111   


Q ss_pred             CCCCCCcEEEEccCCcEEEEE-e----CCeEEEEEcCCce-EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          938 PTAQSDTRVQFHQDQIHFLVV-H----ETQLAIFETTKLE-CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       938 ~~~~~v~~~~~spdg~~l~~~-~----d~~i~iwd~~~~~-~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                         ..+... ++|+|+.|+.. .    ++.|.+||+.++. ....+.. .+...+..++|+ ++.++++...|+..+||.
T Consensus       317 ---~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~  390 (741)
T 1yr2_A          317 ---KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVP-ESKDNLESVGIA-GNRLFASYIHDAKSQVLA  390 (741)
T ss_dssp             ---SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEEC-CCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred             ---CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEec-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence               123333 45899888874 3    3469999998852 3333332 445567788887 677888899999888876


Q ss_pred             cC-CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec---CCcEEEEeccCCC
Q 001311         1012 AA-NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS---DGGVHVFEPLESE 1069 (1102)
Q Consensus      1012 ~~-~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~---Dg~v~vW~~~~~~ 1069 (1102)
                      ++ ++.....+.    ++.   .  ..+..+.++|+...++++.++   .++|++||+.+++
T Consensus       391 ~~~~g~~~~~l~----~~~---~--~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          391 FDLDGKPAGAVS----LPG---I--GSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EETTSCEEEECB----CSS---S--CEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EeCCCCceeecc----CCC---C--eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            65 455555554    221   1  122378888843334444433   4789999998876

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.39  E-value=5.6e-10  Score=121.18  Aligned_cols=278  Identities=9%  Similarity=0.056  Sum_probs=188.0

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      ....+.+++++++|+..++...++.|.+|+..                       +......+..  ....+.+++++++
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-----------------------~~~~~~~~~~--~~~~~~~i~~~~~   72 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-----------------------GRIKEFEVPT--PDAKVMCLIVSSL   72 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------SCEEEEECSS--TTCCEEEEEECTT
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-----------------------CceEEEECCC--CCCcceeEEECCC
Confidence            34578899999999977776677888888752                       1111111111  3356889999999


Q ss_pred             CCeEEEEe-CCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee-eeccccccce
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRIT  894 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~  894 (1102)
                      +++.++.. ++.|..||.. ++... .+......+..+++++ +++++++...++.|..||.. ++... .+......+.
T Consensus        73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~  149 (300)
T 2qc5_A           73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA  149 (300)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred             CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence            98777766 6889999987 55432 2232446789999998 88888877668899999987 55432 2333455688


Q ss_pred             eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE
Q 001311          895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC  973 (1102)
Q Consensus       895 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~  973 (1102)
                      ++++.+++++.++...++.|.+|+. .++...   .... ..   ...+..++++++|.+.++. ..+.|.+|+. +++.
T Consensus       150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~---~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~  220 (300)
T 2qc5_A          150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TN---AAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI  220 (300)
T ss_dssp             EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-ST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred             eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CC---CCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence            9999999998777777888999998 433221   1111 11   1356899999999877775 4668999998 5554


Q ss_pred             eeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEE
Q 001311          974 VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFAL 1053 (1102)
Q Consensus       974 ~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s 1053 (1102)
                      .... ...+...+.+++++++|+++++...++.|.+||. +++.. .+.    .+.+  .  ..+.++.+.+ ++++.++
T Consensus       221 ~~~~-~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~  288 (300)
T 2qc5_A          221 SEYD-IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA  288 (300)
T ss_dssp             EEEE-CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE
T ss_pred             EEEE-CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE
Confidence            4332 2234567899999999997777666799999998 45443 232    1111  1  2234788888 4666665


Q ss_pred             EecCCcEEEEecc
Q 001311         1054 GLSDGGVHVFEPL 1066 (1102)
Q Consensus      1054 ~~~Dg~v~vW~~~ 1066 (1102)
                      .. . .|..+++.
T Consensus       289 ~~-~-~i~~~~p~  299 (300)
T 2qc5_A          289 LK-C-KIGKLNLN  299 (300)
T ss_dssp             CS-S-EEEEEEEC
T ss_pred             cc-C-ceEEeCCC
Confidence            44 4 77777653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.38  E-value=3.5e-11  Score=148.61  Aligned_cols=282  Identities=11%  Similarity=0.039  Sum_probs=172.4

Q ss_pred             cCCCCccccccCCC---ccceEecccCC-CCCccccccCC---CcccccceEEEEEccCCceEEEeecC-----ceEEee
Q 001311          699 LADVKPRITEESND---KSKVWKLTELS-EPNQCRSLRLP---ENLRATKISRLIFTNSGNAILALASN-----AIHLLW  766 (1102)
Q Consensus       699 ~~~~~~l~~~~~d~---~i~~w~~~~~~-~~~~~~~~~~~---~~~~~~~i~~~~~s~~g~~l~~~~~d-----g~i~iw  766 (1102)
                      .+++++++....++   ...+|...... .....+.+.-+   ..++...+..+.|||||++|+.+..+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            36777766544433   35667665320 00111111000   12233478899999999998887654     357777


Q ss_pred             eccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CC--------------eEEE
Q 001311          767 KWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GG--------------KISL  831 (1102)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg--------------~I~i  831 (1102)
                      |+                      .+|..+....    +...+..++|+|| +.|+.++ ++              .|++
T Consensus       195 dl----------------------~tg~~~~~~~----~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~  247 (741)
T 1yr2_A          195 GV----------------------ADGKPLADEL----KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWL  247 (741)
T ss_dssp             ET----------------------TTCCEEEEEE----EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEE
T ss_pred             EC----------------------CCCCCCCccC----CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEE
Confidence            65                      3443322111    1112357899999 9888876 43              3899


Q ss_pred             EEcCCCce--eeee--cCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeecc--eeeeeeccccccceeEEEec
Q 001311          832 FNMMTFKT--MATF--MPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVD--EVKSKLKGHSKRITGLAFSH  900 (1102)
Q Consensus       832 wd~~~~~~--~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~--~~~~~l~~h~~~V~~l~~s~  900 (1102)
                      |++.++..  ...+  ..+...+..+.||| ||++|+..+.++     .|++||+.++  ++...+..+...+.... +|
T Consensus       248 ~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~  325 (741)
T 1yr2_A          248 HRLGTPQSADQPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DG  325 (741)
T ss_dssp             EETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EE
T ss_pred             EECCCCchhCEEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-ec
Confidence            99987652  2223  23334588999999 898888877554     8999999887  32455655665565553 58


Q ss_pred             CCCEEEEEcCC----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcC-CceEe
Q 001311          901 ALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETT-KLECV  974 (1102)
Q Consensus       901 d~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~-~~~~~  974 (1102)
                      +|+.|+..+.+    +.|.+||+.++. ...  ..+...+.   ..+..+.++ ++.++++ ..++..+||.+. +++..
T Consensus       326 dg~~l~~~s~~~~~~~~l~~~d~~~~~-~~~--~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~  398 (741)
T 1yr2_A          326 VGDQLWFVSGDGAPLKKIVRVDLSGST-PRF--DTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPA  398 (741)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEECSSSS-CEE--EEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEE
T ss_pred             cCCEEEEEECCCCCCCEEEEEeCCCCc-ccc--EEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCce
Confidence            99988877754    459999998753 111  11222221   235567777 4555555 478876666554 45555


Q ss_pred             eeeccCCCCCCeeEEEEcCCCcEEEEE-e---CCCeEEEEEcCCcee
Q 001311          975 KQWVPRESSAPITHATFSCDSQLVYAC-F---LDATVCVFSAANLKL 1017 (1102)
Q Consensus       975 ~~~~~~~h~~~v~~l~~spd~~~l~s~-s---~Dg~I~vwd~~~~~~ 1017 (1102)
                      ..+.. .+...+..+.++||++.|+.. +   ..++|++||+.+++.
T Consensus       399 ~~l~~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          399 GAVSL-PGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             EECBC-SSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             eeccC-CCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            55442 235678999999998866533 2   347899999999874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.36  E-value=3.1e-10  Score=124.29  Aligned_cols=257  Identities=14%  Similarity=0.093  Sum_probs=162.5

Q ss_pred             ccCCCCeeEEEEecCCCeEEEE-------EecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEE
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLV-------GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVI  415 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llas-------g~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~  415 (1102)
                      ...-....+++|+++|+ ++++       +..++.|.+||..+++..... .              ....++...+.+++
T Consensus        14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-~--------------~~~~~~~~~~~~i~   77 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVIC-K--------------PEVNGYGGIPAGCQ   77 (314)
T ss_dssp             ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEE-C--------------CEETTEECCEEEEE
T ss_pred             hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEEE-e--------------cccCCCCCCCceEE
Confidence            33455778999999998 4666       577899999998887654310 0              00123456799999


Q ss_pred             EccC-CCeEEEEECCCeEEEEEccCCceeeeEEEe-e-ccccCEEEEEEcCCCCeeEEEEecCC---------------C
Q 001311          416 WSPD-GSLFGVAYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDD---------------K  477 (1102)
Q Consensus       416 ~spd-g~~las~~~d~~v~vwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~d~~~~~l~s~~~d---------------~  477 (1102)
                      ++++ |+++++.. .+.|.+||.+ ++........ . .+...+.+++++++|.  ++++...+               +
T Consensus        78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence            9999 76555544 4479999998 6532210110 0 1124588999999998  56665544               5


Q ss_pred             cEEEEeCCCCeeeEEeecCCCCeEEEeee--ecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCc
Q 001311          478 TIKVWDATNGAKQYIFEGHEAPVYSVCPH--HKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT  554 (1102)
Q Consensus       478 ~i~vWd~~~~~~~~~~~~h~~~v~~v~~~--~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~  554 (1102)
                      .|..||.. ++..... .+......++++  .+++++.+ ++...++.|.+||+.........       ..+.-     
T Consensus       154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~-------~~~~~-----  219 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK-------KVWGH-----  219 (314)
T ss_dssp             EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE-------EEEEE-----
T ss_pred             eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccc-------eEEEE-----
Confidence            67778765 5544333 234456777774  11566555 44456899999987621111000       00000     


Q ss_pred             eeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEE
Q 001311          555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKIL  633 (1102)
Q Consensus       555 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw  633 (1102)
                        +.++.......++++++|+.+++...++.|.+||..+++.+..+..+.  ..+.+++|+++++.|++++ .++.|..|
T Consensus       220 --~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~i~~~~dg~~l~v~~~~~~~l~~~  295 (314)
T 1pjx_A          220 --IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             --CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             --CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCC--CCceeEEECCCCCEEEEEeCCCCeEEEE
Confidence              000000234557777777777777788999999998787776665442  3588999999999665554 56789999


Q ss_pred             EccC
Q 001311          634 ATSD  637 (1102)
Q Consensus       634 d~~~  637 (1102)
                      ++..
T Consensus       296 ~~~~  299 (314)
T 1pjx_A          296 EWQR  299 (314)
T ss_dssp             ECSS
T ss_pred             eCCC
Confidence            8764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.36  E-value=2.5e-09  Score=115.98  Aligned_cols=240  Identities=11%  Similarity=0.022  Sum_probs=162.8

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      ....+.++++.++|+ ++++...++.|.+||.. ++....                  .+..+...+.+++++++|++.+
T Consensus        18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v   77 (300)
T 2qc5_A           18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF------------------EVPTPDAKVMCLIVSSLGDIWF   77 (300)
T ss_dssp             TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred             CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE------------------ECCCCCCcceeEEECCCCCEEE
Confidence            456889999999998 46666678999999987 544321                  1223346799999999999888


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE-EeecCCCCeEEE
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY-IFEGHEAPVYSV  503 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~-~~~~h~~~v~~v  503 (1102)
                      +...++.|..||.. ++.. . ..+......+.++++.+++.  ++++...++.|..||.. ++... .+......+.++
T Consensus        78 ~~~~~~~v~~~d~~-g~~~-~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i  151 (300)
T 2qc5_A           78 TENGANKIGKLSKK-GGFT-E-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFI  151 (300)
T ss_dssp             EETTTTEEEEECTT-SCEE-E-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEE
T ss_pred             EecCCCeEEEECCC-CCeE-E-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeE
Confidence            77778899999988 5432 1 12333446789999999998  67777768899999987 66543 233344567777


Q ss_pred             eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC
Q 001311          504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  583 (1102)
Q Consensus       504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  583 (1102)
                      ++  ++++.+.++...++.|..||. ++.. ..+....                   .......++++++++.+++....
T Consensus       152 ~~--d~~g~l~v~~~~~~~i~~~~~-~g~~-~~~~~~~-------------------~~~~~~~i~~d~~g~l~v~~~~~  208 (300)
T 2qc5_A          152 TL--GSDNALWFTENQNNSIGRITN-TGKL-EEYPLPT-------------------NAAAPVGITSGNDGALWFVEIMG  208 (300)
T ss_dssp             EE--CTTSSEEEEETTTTEEEEECT-TCCE-EEEECSS-------------------TTCCEEEEEECTTSSEEEEETTT
T ss_pred             EE--CCCCCEEEEecCCCeEEEECC-CCcE-EEeeCCC-------------------CCCCcceEEECCCCCEEEEccCC
Confidence            76  456676666666788999987 3222 1111100                   01234556666666666666667


Q ss_pred             CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                      +.|.+||. +++.... ........+.+++++++|+++++...++.|..|+.
T Consensus       209 ~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          209 NKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             TEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             CEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            78999998 5554332 22222345778999999987776656788999886

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.34  E-value=1.8e-10  Score=126.17  Aligned_cols=245  Identities=8%  Similarity=0.036  Sum_probs=162.3

Q ss_pred             cceEEEEEccCCceEEE-------eecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC-CCCCCCCeeE
Q 001311          740 TKISRLIFTNSGNAILA-------LASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT-DSNPEEAVPC  811 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~-------~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~i~~  811 (1102)
                      ....+++|+++|+.+++       ...++.|.+|+...                      +........ ..++...+.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~----------------------g~~~~~~~~~~~~~~~~~~~   75 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT----------------------GKKTVICKPEVNGYGGIPAG   75 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT----------------------CCEEEEECCEETTEECCEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC----------------------CcEEEEEecccCCCCCCCce
Confidence            35578999999987777       56778888887532                      221110000 0013356889


Q ss_pred             EEEecC-CCeEEEEeCCeEEEEEcCCCceeee-ecC----CCCCeeEEEEecCCCcEEEEEeCC---------------C
Q 001311          812 FALSKN-DSYVMSASGGKISLFNMMTFKTMAT-FMP----PPPAATFLAFHPQDNNIIAIGMDD---------------S  870 (1102)
Q Consensus       812 l~~s~d-~~~las~sdg~I~iwd~~~~~~~~~-~~~----~~~~i~~l~~sp~d~~~lasg~~d---------------g  870 (1102)
                      ++++++ ++++++..++.|.+||.. ++.... ...    ....+.++++++ +++++++...+               +
T Consensus        76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence            999999 776666656689999988 665433 221    123588999999 88887776655               5


Q ss_pred             cEEEEEeecceeeeeeccccccceeEEEe----cCCCEEE-EEcCCCcEEEEEcC-CCcccceeeeecCCCCCCCCCCCc
Q 001311          871 SIQIYNVRVDEVKSKLKGHSKRITGLAFS----HALNVLV-SSGADSQLCVWSSD-GWEKQKNRFLQIPTGRTPTAQSDT  944 (1102)
Q Consensus       871 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s----~d~~~l~-s~s~Dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~  944 (1102)
                      .|..||.. ++... +..+......++|+    +|++.|. +...++.|.+|+++ .++...........++.  ...+.
T Consensus       154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~  229 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGAD  229 (314)
T ss_dssp             EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEE
T ss_pred             eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCC
Confidence            67777654 44332 33344456789999    9997654 45667899999986 33322222222222211  02457


Q ss_pred             EEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEE-EEeCCCeEEEEEcCC
Q 001311          945 RVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVY-ACFLDATVCVFSAAN 1014 (1102)
Q Consensus       945 ~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~-s~s~Dg~I~vwd~~~ 1014 (1102)
                      .++++++|+++++. .++.|.+||..+++.+..+.  .+...+.+++|++||++|+ +...++.|..|++..
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR--CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE--CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe--CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            89999999988875 67899999998777666554  3457899999999999555 445568899999864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.32  E-value=3.6e-10  Score=122.96  Aligned_cols=237  Identities=12%  Similarity=0.076  Sum_probs=156.5

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +..+.......+|+|+|++|++++..++.|..|+. +++...                    +..+...+..++++++|+
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~   98 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQR   98 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSC
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCC
Confidence            44466678899999999988999999999999998 454321                    233456789999999999


Q ss_pred             eEEEEECCCeEEEEEccCCceeeeEEE-eecc-ccCEEEEEEcCCCCeeEEEE----ecC-------------CCcEEEE
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEVRQHLE-IDAH-VGGVNDIAFSHPNKQLCVIT----CGD-------------DKTIKVW  482 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~~~~~~-l~~h-~~~V~~v~~s~d~~~~~l~s----~~~-------------d~~i~vW  482 (1102)
                      ++++...++.|.+|+.+ ++. ..+.. ..+. ...+.++++.++|+  +++|    |..             .+.|..|
T Consensus        99 l~v~~~~~~~v~~~~~~-g~~-~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           99 LVHCEHGRRAITRSDAD-GQA-HLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             EEEEETTTTEEEEECTT-SCE-EEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             EEEEECCCCEEEEECCC-CCE-EEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEE
Confidence            77766667889999986 442 22111 1111 13477899999998  6665    332             2568888


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC------CeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCcee
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD------GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRT  556 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~  556 (1102)
                      |..+++.....  .....+.++|  +++++.|+.+...      +.|.+|++.... +...                 ..
T Consensus       175 d~~~g~~~~~~--~~~~p~gl~~--spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~-----------------~~  232 (305)
T 3dr2_A          175 PPDGSPLQRMA--DLDHPNGLAF--SPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDR-----------------RH  232 (305)
T ss_dssp             CSSSCCCEEEE--EESSEEEEEE--CTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEE-----------------EE
T ss_pred             cCCCCcEEEEe--cCCCCcceEE--cCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCC-----------------eE
Confidence            87777655433  3445677887  4566767666554      789999887533 1100                 00


Q ss_pred             eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEE
Q 001311          557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIK  631 (1102)
Q Consensus       557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~  631 (1102)
                      +..........++++++|+ |.++..+ .|.+|+. .++.+..+....   .+.+++|+++++.|.+++.++..+
T Consensus       233 ~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~-~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          233 FASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS-DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             EECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             EEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            0000111233466777777 4444444 5999998 577777776543   378899999999999888764433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.30  E-value=7.3e-10  Score=125.30  Aligned_cols=250  Identities=8%  Similarity=-0.010  Sum_probs=164.8

Q ss_pred             CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC--cEEEEEeecceee
Q 001311          807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVK  883 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~  883 (1102)
                      .....++++++++++++.. ++.|++||..++........ ..... ++|++ +++.|++++.++  .|++|+...+...
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence            4578999999999777666 68999999988776555443 23334 99999 888888888766  7888887765443


Q ss_pred             eee----ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCc-EEEEccC-CcEEEE
Q 001311          884 SKL----KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT-RVQFHQD-QIHFLV  957 (1102)
Q Consensus       884 ~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~spd-g~~l~~  957 (1102)
                      ..+    ..+...+.+++++|++..|..+..++.|+.||..++......... ..+...  .... .++|+|+ +.++++
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence            333    224566789999995555555777889999999876421110000 111110  1113 9999996 554444


Q ss_pred             E-eCCeEEEEEcCCceEeeeeccCC-------------CCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311          958 V-HETQLAIFETTKLECVKQWVPRE-------------SSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       958 ~-~d~~i~iwd~~~~~~~~~~~~~~-------------h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      . .++.|+.|+....  +..+....             .-.....++|+++|+++++-+ .++.|+.|++.+++......
T Consensus       285 d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g  362 (409)
T 3hrp_A          285 DQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG  362 (409)
T ss_dssp             ETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred             eCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence            3 5788999987654  22221110             024588999999999888777 78999999988887654332


Q ss_pred             CCccc--CCC--CCCCcccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311         1023 PSAYL--PAG--VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1023 ~~~~~--~~g--h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                      .....  ..+  ....-..|..++++++ +.++++-..++.|+.+++
T Consensus       363 ~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          363 QVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred             CCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence            10000  000  0011134778999994 888888888889988876

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.29  E-value=7.4e-10  Score=123.52  Aligned_cols=257  Identities=12%  Similarity=0.110  Sum_probs=166.3

Q ss_pred             cCCCeEEEEEecC----CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE----
Q 001311          356 PVQQTLLLVGTNV----GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY----  427 (1102)
Q Consensus       356 pdg~~llasg~~d----~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~----  427 (1102)
                      |++++++++...+    +.|.+.|..+++.+....                  .+ ..+  .+++||||++|.++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~------------------vG-~~P--gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD------------------GG-FLP--HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE------------------EC-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE------------------CC-CCC--ceEECCCCCEEEEEecccc
Confidence            4566666666554    799999999999887522                  12 224  799999999998876    


Q ss_pred             ------CCCeEEEEEccCCceeeeEEEee--c---cccCEEEEEEcCCCCeeEEEEec--CCCcEEEEeCCCCeeeEEee
Q 001311          428 ------SRHIVQIYSYHGGDEVRQHLEID--A---HVGGVNDIAFSHPNKQLCVITCG--DDKTIKVWDATNGAKQYIFE  494 (1102)
Q Consensus       428 ------~d~~v~vwd~~~~~~~~~~~~l~--~---h~~~V~~v~~s~d~~~~~l~s~~--~d~~i~vWd~~~~~~~~~~~  494 (1102)
                            .++.|.++|..+++.+..+. +.  .   .......++|+|||+.  ++.+.  .++.|.+.|+.+++.+.++.
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                  46789999999988766432 21  0   1123467899999995  44443  36889999999999998886


Q ss_pred             cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCee----eecCCCCee-eEEEEccCCceeeecc---------
Q 001311          495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRV----DYEAPGRWC-TTMAYSADGTRTYQGF---------  560 (1102)
Q Consensus       495 ~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~----~~~~~~~~v-~~~~~s~~~~~~~~~~---------  560 (1102)
                      --..    ....+... ..+++.+.||.+.+.+..+.+...    .+......+ ..+.+.+++..++...         
T Consensus       218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD  292 (426)
T 3c75_H          218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQAD  292 (426)
T ss_dssp             CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEE
T ss_pred             cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEe
Confidence            3221    11222222 455666677777777774333221    111111110 1122233332211100         


Q ss_pred             ------------------------ccCceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCcceEEEEcCCCCC
Q 001311          561 ------------------------RKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGGL  606 (1102)
Q Consensus       561 ------------------------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~  606 (1102)
                                              .......+.++++++++++...          ++.|.++|..+.+.+..+....  
T Consensus       293 ~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~--  370 (426)
T 3c75_H          293 LTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH--  370 (426)
T ss_dssp             ECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--
T ss_pred             ccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC--
Confidence                                    0011122678888888777642          3579999999999999887543  


Q ss_pred             CCcCeEEEcCCCC-EEEEEE-CCCcEEEEEccCCccceeec
Q 001311          607 PASPRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTF  645 (1102)
Q Consensus       607 ~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~  645 (1102)
                       ...+++|+|||+ ++++.. .++.|.++|..++ +.++.+
T Consensus       371 -~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~-kvv~tI  409 (426)
T 3c75_H          371 -EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG-EELRSV  409 (426)
T ss_dssp             -EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEE
T ss_pred             -CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC-CEEEEe
Confidence             367899999999 888888 5899999999998 555543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.28  E-value=1.7e-09  Score=122.39  Aligned_cols=255  Identities=10%  Similarity=0.037  Sum_probs=165.8

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  426 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  426 (1102)
                      ..+..|+|+|+|+ |+++...++.|++||..+++....                   ... ..... ++|+|++++|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence            4789999999998 688888889999999988766542                   112 22233 9999999999998


Q ss_pred             ECCC--eEEEEEccCCceeeeEEEeec-cccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE----eecCCCC
Q 001311          427 YSRH--IVQIYSYHGGDEVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI----FEGHEAP  499 (1102)
Q Consensus       427 ~~d~--~v~vwd~~~~~~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~----~~~h~~~  499 (1102)
                      ..++  .|.+|+..++........+.. +...+.+++++|++..  |+.+..++.|+.||..++.....    ..++...
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            8766  799999887654332211222 4567889999996553  34466688999999987764332    2233222


Q ss_pred             e--EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          500 V--YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       500 v--~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      -  ..++|++. ++.++++-..++.|+.|+.+..  ...+.+..... .   ..+|  ......-.....++++++++++
T Consensus       267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~-g---~~dg--~~~~~~~~~P~gia~d~dG~ly  337 (409)
T 3hrp_A          267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQK-T---VQDG--LREEALFAQPNGMTVDEDGNFY  337 (409)
T ss_dssp             SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCC-S---CBCE--EGGGCBCSSEEEEEECTTCCEE
T ss_pred             CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCC-C---cCCC--cccccEeCCCeEEEEeCCCCEE
Confidence            2  27887542 3566777777899999987642  22221111000 0   0000  0000001235678888888877


Q ss_pred             EEEe-CCCeEEEEECCCcceEEEEcCCC-------------CCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          578 LAAG-DDFSIKFWDMDSVQLLTSIDADG-------------GLPASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       578 ~~~~-~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                      ++-. .++.|+.|++.++... .+.+..             .......+++++++.++++-..++.|+.+++
T Consensus       338 vad~~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          338 IVDGFKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EEETTTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             EEeCCCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            7777 7899999998777643 333221             1234678999999888888888888888764

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=1.1e-10  Score=129.31  Aligned_cols=274  Identities=7%  Similarity=-0.015  Sum_probs=177.4

Q ss_pred             cceEEEEEccCCceEEEeec--CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          740 TKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      .....++++++|+.+++...  ++.++||.+..      ++..      -|-  ...     .....+-..+..++++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~------~~p--~~~-----~~~~~~~~~p~gv~~d~~   77 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLI------PFP--PQS-----GNAIITFDTVLGIKSDGN   77 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEE------ESC--CCC-----SSCCCCCSCEEEEEECSS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCee------cCC--Ccc-----cCcccceeEeeEEEEcCC
Confidence            46789999999998777542  34366776531      1110      000  000     001125567899999999


Q ss_pred             CCeEEEEe------CCeEEEEEcCCCceeeeecCC------CCCeeEEEEecCCCcEEEEEe---CCCcEEEEEeeccee
Q 001311          818 DSYVMSAS------GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIGM---DDSSIQIYNVRVDEV  882 (1102)
Q Consensus       818 ~~~las~s------dg~I~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg~---~dg~v~vwd~~~~~~  882 (1102)
                      ++++++-.      ++.|.+||+.+++.++.+..+      ...+..++++++++..+++..   .++.|.+||+.+++.
T Consensus        78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~  157 (343)
T 2qe8_A           78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA  157 (343)
T ss_dssp             SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred             CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence            98666543      378999999998877665432      235689999983455555555   678999999998887


Q ss_pred             eeeeccccccce-eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC
Q 001311          883 KSKLKGHSKRIT-GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE  960 (1102)
Q Consensus       883 ~~~l~~h~~~V~-~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d  960 (1102)
                      .+.+.+|..... ...+..+|..+.+.+.|++++.|..                      .+..++|+|||+.|+++ ..
T Consensus       158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEESS
T ss_pred             EEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeCC
Confidence            777766533211 1456678888888888888876642                      23679999999988885 33


Q ss_pred             C-eEEEEEcCC---ce-----EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCC
Q 001311          961 T-QLAIFETTK---LE-----CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1031 (1102)
Q Consensus       961 ~-~i~iwd~~~---~~-----~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh 1031 (1102)
                      + .+..++...   +.     ....+...++......++++++|.++++...++.|.+||..+|+......    .+   
T Consensus       216 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~---  288 (343)
T 2qe8_A          216 STSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE---  288 (343)
T ss_dssp             CSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG---
T ss_pred             CCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC---
Confidence            3 555554321   10     00001111223466789999999999999899999999986676543332    11   


Q ss_pred             CCCcccceEEEecCCCCCEEEEEecCCcEEEEe
Q 001311         1032 SSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus      1032 ~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
                        ...+|.+++|.+ ++.++++.+..+.+.+|.
T Consensus       289 --~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          289 --KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             --GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred             --ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence              114566899998 578888877666554443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.27  E-value=2.4e-10  Score=125.40  Aligned_cols=198  Identities=9%  Similarity=-0.018  Sum_probs=127.4

Q ss_pred             eEEEEecCCCeEEEEe---CCeEEE--EEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-----
Q 001311          810 PCFALSKNDSYVMSAS---GGKISL--FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-----  879 (1102)
Q Consensus       810 ~~l~~s~d~~~las~s---dg~I~i--wd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-----  879 (1102)
                      ..++++|||++++++.   ++.|.+  +|..+   +.++....  .  ..+.|++.+.+++.+.||.+.+.|+.+     
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~--~--~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS--C--FHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS--C--CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC--c--eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            4577888888888775   256778  88876   44443211  1  223353455666677889988888876     


Q ss_pred             ceeeee----eccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCC----CCCCCCCCcEEEEccC
Q 001311          880 DEVKSK----LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTG----RTPTAQSDTRVQFHQD  951 (1102)
Q Consensus       880 ~~~~~~----l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~spd  951 (1102)
                      ++....    +.-...+.   + ++++..++..+. +.|.+.|+.+........+.....    ....+.....++|+||
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d  274 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred             CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence            443321    11112222   3 667777666666 899999987543211111111000    0000012233789999


Q ss_pred             CcEEEEE-e-C--------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcE-EEEEe-CCCeEEEEEcCCceeEE
Q 001311          952 QIHFLVV-H-E--------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL-VYACF-LDATVCVFSAANLKLRC 1019 (1102)
Q Consensus       952 g~~l~~~-~-d--------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~-l~s~s-~Dg~I~vwd~~~~~~~~ 1019 (1102)
                      |+++.++ . .        +.+.++|+.+++.+..+...   .....++|+|||++ +++.. .++.|.|+|+.+++.+.
T Consensus       275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~  351 (368)
T 1mda_H          275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence            9998874 3 2        36779999999999888653   36899999999985 55555 59999999999999999


Q ss_pred             EeC
Q 001311         1020 RIN 1022 (1102)
Q Consensus      1020 ~~~ 1022 (1102)
                      ++.
T Consensus       352 ~I~  354 (368)
T 1mda_H          352 SVE  354 (368)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            887

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=1.3e-09  Score=117.97  Aligned_cols=229  Identities=10%  Similarity=0.063  Sum_probs=149.3

Q ss_pred             ceEEEEEccCCc-eEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          741 KISRLIFTNSGN-AILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       741 ~i~~~~~s~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      -..+..|++++. .+++...++.|..|+...                      +......     ....+.+++++++|+
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~----------------------~~~~~~~-----~~~~~~~i~~~~dG~   66 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFT----------------------KQVQRVT-----MDAPVSSVALRQSGG   66 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTT----------------------CCEEEEE-----CSSCEEEEEEBTTSS
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCC----------------------CcEEEEe-----CCCceEEEEECCCCC
Confidence            345788888654 444445578888887532                      2211111     345688999999999


Q ss_pred             eEEEEeCCeEEEEEcCCCceeeeecC----CCCCeeEEEEecCCCcEEEEEeCC---------CcEEEEEeecceeeeee
Q 001311          820 YVMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKL  886 (1102)
Q Consensus       820 ~las~sdg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~~~~~~~l  886 (1102)
                      ++++ .++.|.+||..+++.......    ....+..++++| +|+++++...+         ..-.||.+........+
T Consensus        67 l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~  144 (297)
T 3g4e_A           67 YVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY  144 (297)
T ss_dssp             EEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE
T ss_pred             EEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE
Confidence            5554 577899999987765433221    123478899999 88877654322         23455655432222333


Q ss_pred             ccccccceeEEEecCCCEE-EEEcCCCcEEEEEc--CCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311          887 KGHSKRITGLAFSHALNVL-VSSGADSQLCVWSS--DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  962 (1102)
Q Consensus       887 ~~h~~~V~~l~~s~d~~~l-~s~s~Dg~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~  962 (1102)
                      ..+......++|+||++.| ++.+.++.|.+|++  .++..............   ......++++++|++.++. ..+.
T Consensus       145 ~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~---~~~p~g~~~d~~G~lwva~~~~~~  221 (297)
T 3g4e_A          145 FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKE---EQIPDGMCIDAEGKLWVACYNGGR  221 (297)
T ss_dssp             EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGG---GCEEEEEEEBTTSCEEEEEETTTE
T ss_pred             eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCC---CCCCCeeEECCCCCEEEEEcCCCE
Confidence            3344456789999999876 45566788999997  44443222222222111   1245789999999877775 5678


Q ss_pred             EEEEEcCCceEeeeeccCCCCCCeeEEEEc-CCCcEEEEEeC
Q 001311          963 LAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFL 1003 (1102)
Q Consensus       963 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~ 1003 (1102)
                      |..||..+++.+..+..  +...+++++|. ||++.|+.++.
T Consensus       222 v~~~d~~tG~~~~~i~~--p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          222 VIRLDPVTGKRLQTVKL--PVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             EEEECTTTCCEEEEEEC--SSSBEEEEEEESGGGCEEEEEEB
T ss_pred             EEEEcCCCceEEEEEEC--CCCCceEEEEeCCCCCEEEEEcC
Confidence            99999999998887763  35689999998 88887766554

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.25  E-value=2.2e-09  Score=116.22  Aligned_cols=236  Identities=11%  Similarity=0.072  Sum_probs=154.1

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      ..-..+..|+|++..|+++...++.|..||..+++....                     .+...+.+++++++|+++++
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~v~   70 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYVAT   70 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEEEE
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEEEE
Confidence            345678999998877888888899999999988765321                     12357999999999996555


Q ss_pred             EECCCeEEEEEccCCceeeeEEEeec--cccCEEEEEEcCCCCeeEEEEecC---------CCcEEEEeCCC-CeeeEEe
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD---------DKTIKVWDATN-GAKQYIF  493 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~~~---------d~~i~vWd~~~-~~~~~~~  493 (1102)
                      .  ++.|.+||.++++.. .+.....  ....+..++++++|+  ++++...         .....||.+.. ++... +
T Consensus        71 ~--~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~  144 (297)
T 3g4e_A           71 I--GTKFCALNWKEQSAV-VLATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y  144 (297)
T ss_dssp             E--TTEEEEEETTTTEEE-EEEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred             E--CCeEEEEECCCCcEE-EEEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence            3  567999999887643 2222111  124588999999998  4454321         12344555443 44333 3


Q ss_pred             ecCCCCeEEEeeeecCCccEE-EEEeCCCeEEEEEcCC-CCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311          494 EGHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDN-LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  571 (1102)
Q Consensus       494 ~~h~~~v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  571 (1102)
                      ..+....+.++|+  ++++.| ++.+.++.|.+|+++. .......        .+...      + .........++++
T Consensus       145 ~~~~~~pngi~~s--pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~--------~~~~~------~-~~~~~~p~g~~~d  207 (297)
T 3g4e_A          145 FDQVDISNGLDWS--LDHKIFYYIDSLSYSVDAFDYDLQTGQISNR--------RSVYK------L-EKEEQIPDGMCID  207 (297)
T ss_dssp             EEEESBEEEEEEC--TTSCEEEEEEGGGTEEEEEEECTTTCCEEEE--------EEEEE------C-CGGGCEEEEEEEB
T ss_pred             eeccccccceEEc--CCCCEEEEecCCCCcEEEEeccCCCCcccCc--------EEEEE------C-CCCCCCCCeeEEC
Confidence            3344456778875  555555 5666689999998752 1111100        00000      0 0011244567778


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc-CCCCEEEEEECC
Q 001311          572 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTND  627 (1102)
Q Consensus       572 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~d  627 (1102)
                      ++|++.++....+.|.+||..+++.+..+....  ..+++++|. |+++.|++++..
T Consensus       208 ~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~--~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          208 AEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPV--DKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             TTSCEEEEEETTTEEEEECTTTCCEEEEEECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred             CCCCEEEEEcCCCEEEEEcCCCceEEEEEECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence            888777777788899999999899888887553  358899998 888888777653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.23  E-value=4.3e-09  Score=127.00  Aligned_cols=203  Identities=12%  Similarity=0.117  Sum_probs=136.4

Q ss_pred             eEEEEecCCCcEEEEEeCCC-------------------cEEEEEeecceeeeeecc--cc-------ccceeEEEecCC
Q 001311          851 TFLAFHPQDNNIIAIGMDDS-------------------SIQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL  902 (1102)
Q Consensus       851 ~~l~~sp~d~~~lasg~~dg-------------------~v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~  902 (1102)
                      ..++++| ++.+|++++.++                   .|..+|..+|+.+..++.  |.       ....-+....+|
T Consensus       246 ~~~~~d~-~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG  324 (677)
T 1kb0_A          246 DSMTFDA-ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAG  324 (677)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred             cceeEcC-CCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence            4678999 777888887664                   499999999998876643  31       112223334477


Q ss_pred             ---CEEEEEcCCCcEEEEEcCCCcccceeeeecC--------CCC------------C----C---CCCCCcEEEEccCC
Q 001311          903 ---NVLVSSGADSQLCVWSSDGWEKQKNRFLQIP--------TGR------------T----P---TAQSDTRVQFHQDQ  952 (1102)
Q Consensus       903 ---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~--------~~~------------~----~---~~~~v~~~~~spdg  952 (1102)
                         +.|+.++.+|.|.++|..+++..........        .+.            .    +   ....-..++|+|++
T Consensus       325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~  404 (677)
T 1kb0_A          325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQT  404 (677)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTT
T ss_pred             cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCC
Confidence               6899999999999999999886432211100        000            0    0   00011367899998


Q ss_pred             cEEEEE-eC-------------------------------------------CeEEEEEcCCceEeeeeccCCCCCCeeE
Q 001311          953 IHFLVV-HE-------------------------------------------TQLAIFETTKLECVKQWVPRESSAPITH  988 (1102)
Q Consensus       953 ~~l~~~-~d-------------------------------------------~~i~iwd~~~~~~~~~~~~~~h~~~v~~  988 (1102)
                      .++++. .+                                           +.|..||+.+++.+-.+..   ..++..
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~  481 (677)
T 1kb0_A          405 GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH---VSPWNG  481 (677)
T ss_dssp             TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE---SSSCCC
T ss_pred             CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC---CCCCcC
Confidence            888773 21                                           6799999999998777653   334555


Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEec-----------
Q 001311          989 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLS----------- 1056 (1102)
Q Consensus       989 l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~~----------- 1056 (1102)
                      ..++.++.++++++.||.+++||..+|+.+.++.    .+.+     +...-+.|.. +|+ ++++.+.           
T Consensus       482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~  551 (677)
T 1kb0_A          482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP----TGTG-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARA  551 (677)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCS
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCceeeeee----CCCC-----cccCCEEEEe-CCEEEEEEeccCCccccccccc
Confidence            6677788899999999999999999999999887    3333     2222456655 455 4444333           


Q ss_pred             -----CCcEEEEeccC
Q 001311         1057 -----DGGVHVFEPLE 1067 (1102)
Q Consensus      1057 -----Dg~v~vW~~~~ 1067 (1102)
                           .+.+.+|.+..
T Consensus       552 ~~~~~~~~l~~f~l~~  567 (677)
T 1kb0_A          552 TERQGPGTVYTFVVGG  567 (677)
T ss_dssp             CSCCCCCEEEEEEETC
T ss_pred             cccCCCCeEEEEeccc
Confidence                 36788888864

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.22  E-value=1.9e-10  Score=126.36  Aligned_cols=173  Identities=12%  Similarity=0.120  Sum_probs=134.4

Q ss_pred             CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCc-----------eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-----------TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~-----------~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                      ..+..+++++...++++|+...+.+|++++..           ..... .+.. |+.++|   |+++|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            36889999999999999996688889976433           11222 3556 999999   57888888 88999999


Q ss_pred             EeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311          876 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  955 (1102)
Q Consensus       876 d~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  955 (1102)
                      |+.+.........|...+.++.+.+.  .+++++.||.|.+||++.+....     ..       ..|++++|||+| ..
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~-------~~Vs~v~WSpkG-~~  176 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LA-------QNVTSFDVTNSQ-LA  176 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EE-------ESEEEEEECSSE-EE
T ss_pred             EchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----cc-------CCceEEEEcCCc-eE
Confidence            99876655666677888888877654  38889999999999999765321     11       378999999999 44


Q ss_pred             EEEeCCeEEEEEcCCceE--eeeecc----C---CCCCCeeEEEEcCCCcEEEE
Q 001311          956 LVVHETQLAIFETTKLEC--VKQWVP----R---ESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus       956 ~~~~d~~i~iwd~~~~~~--~~~~~~----~---~h~~~v~~l~~spd~~~l~s 1000 (1102)
                      +...||.+++|+..+++.  .+.+..    .   +|...|.+++|.+++.++++
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            446899999999988886  455521    1   46889999999999999886

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.21  E-value=6.6e-10  Score=135.67  Aligned_cols=245  Identities=15%  Similarity=0.120  Sum_probs=155.0

Q ss_pred             CCCCeeEEEEecCCCeEEEEEec----CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTN----VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~----d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      |...+..++|||||++|+.+.+.    ..+|+|||+.+++.+...                  +.+  .....++|+ ||
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~--~k~~~~~Ws-Dg  185 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP------------------LKD--VKFSGISWL-GN  185 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE------------------EEE--EESCCCEEE-TT
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc------------------cCC--ceeccEEEe-CC
Confidence            45678899999999985554433    357999999999865420                  110  013567899 99


Q ss_pred             CeEEEEECCC-------------eEEEEEccCCcee-eeEEEeec-cccCEEEEEEcCCCCeeEEEEec---CCCcEEEE
Q 001311          421 SLFGVAYSRH-------------IVQIYSYHGGDEV-RQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG---DDKTIKVW  482 (1102)
Q Consensus       421 ~~las~~~d~-------------~v~vwd~~~~~~~-~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~vW  482 (1102)
                      +.|+.++.+.             .|++|++.++..- ..+..... |...+..+.|+|||+.+ +++.+   .+..|++|
T Consensus       186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~  264 (693)
T 3iuj_A          186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK  264 (693)
T ss_dssp             TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred             CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence            9999998874             3999999876532 12222333 45567899999999963 33333   23589999


Q ss_pred             eCCCCe-eeEEeecCCCCeEEEeeeecCCccEEEEEeCC---CeEEEEEcCCCCC--eeeecCCCCeeeEEEEccCCcee
Q 001311          483 DATNGA-KQYIFEGHEAPVYSVCPHHKENIQFIFSTALD---GKIKAWLYDNLGS--RVDYEAPGRWCTTMAYSADGTRT  556 (1102)
Q Consensus       483 d~~~~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d---g~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~  556 (1102)
                      |+.++. ....+..+....... +++.+ +.+++....+   +.|..||+.+...  ...+..+...+            
T Consensus       265 d~~~~~~~~~~l~~~~~~~~~~-~~~~g-~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~------------  330 (693)
T 3iuj_A          265 DLSQENAPLLTVQGDLDADVSL-VDNKG-STLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQV------------  330 (693)
T ss_dssp             ETTSTTCCCEEEECSSSSCEEE-EEEET-TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC------------
T ss_pred             ECCCCCCceEEEeCCCCceEEE-EeccC-CEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCE------------
Confidence            998764 456666666666554 33333 2444555443   6788899887543  12222222211            


Q ss_pred             eeccccCceeEEEEcCCCCEEEEEeC-CC--eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC----Cc
Q 001311          557 YQGFRKRSLGVVQFDTTKNRFLAAGD-DF--SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND----NG  629 (1102)
Q Consensus       557 ~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~  629 (1102)
                              +   .++++++.|+.... ++  .|++|++..+ ....+.... ...+..+.+++++..|+....+    ++
T Consensus       331 --------~---~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~  397 (693)
T 3iuj_A          331 --------L---TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPT  397 (693)
T ss_dssp             --------E---EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred             --------E---EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCE
Confidence                    1   45555566666553 43  6899998754 445554322 2245566778888877766555    78


Q ss_pred             EEEEEccCC
Q 001311          630 IKILATSDG  638 (1102)
Q Consensus       630 i~iwd~~~~  638 (1102)
                      +..||+.++
T Consensus       398 l~~~d~~~g  406 (693)
T 3iuj_A          398 LYRFEPKSG  406 (693)
T ss_dssp             EEEECTTTC
T ss_pred             EEEEECCCC
Confidence            999998776

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.19  E-value=3.2e-05  Score=91.68  Aligned_cols=526  Identities=10%  Similarity=0.034  Sum_probs=276.7

Q ss_pred             eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECCCeEEEEEcc
Q 001311          360 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYH  438 (1102)
Q Consensus       360 ~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~vwd~~  438 (1102)
                      +|+.+  ..+.|+.-++.+......                  +....-..+..|+|++++..|..+ ..++.|..+++.
T Consensus         8 ~Ll~s--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~   67 (628)
T 4a0p_A            8 FLLFS--RRADIRRISLETNNNNVA------------------IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMN   67 (628)
T ss_dssp             EEEEE--ETTEEEEEESSCTTCEEE------------------CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEE--eCCcEEEEECCCCCcceE------------------EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECC
Confidence            34554  347899999876543221                  111223468899999976666554 457889999987


Q ss_pred             CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEE-
Q 001311          439 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-  517 (1102)
Q Consensus       439 ~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-  517 (1102)
                      +.... ..  +.........|++.+.+.. +.++-...+.|.+.++........+........++++.+. +|.+.++- 
T Consensus        68 g~~~~-~v--~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~  142 (628)
T 4a0p_A           68 GSALE-HV--VEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEW  142 (628)
T ss_dssp             SCSCE-EE--ECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEEC
T ss_pred             CCCcE-EE--EeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCC
Confidence            65422 11  2222245778999877765 4566667788999997654332223334445677877532 33343433 


Q ss_pred             eCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcce
Q 001311          518 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQL  596 (1102)
Q Consensus       518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~  596 (1102)
                      +..+.|...+++........ ....                     ....++++++++.|+.+. ..+.|..+|+.....
T Consensus       143 g~~~~I~r~~~dG~~~~~l~-~~~~---------------------~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~  200 (628)
T 4a0p_A          143 GGKPKIDRAAMDGSERTTLV-PNVG---------------------RANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR  200 (628)
T ss_dssp             SSSCEEEEEETTSCSCEEEE-CSCS---------------------SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCCCEEEEEeCCCCceEEEE-CCCC---------------------CcceEEEccccCEEEEEECCCCEEEEEcCCCCce
Confidence            22456766666543322111 1122                     334455665555565554 567888999865443


Q ss_pred             EEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhc
Q 001311          597 LTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATS  676 (1102)
Q Consensus       597 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  676 (1102)
                       ..+...  .....++++.. +....+-...+.|...|..++. ....+.......                        
T Consensus       201 -~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~-~~~~l~~~~~~p------------------------  251 (628)
T 4a0p_A          201 -EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ-NRTIIQGHLDYV------------------------  251 (628)
T ss_dssp             -EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC-SCEEEECSCCSC------------------------
T ss_pred             -EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC-ceEEEecCCCCc------------------------
Confidence             233221  12345677754 3344444446788888876663 222222110000                        


Q ss_pred             cccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEc-cCCceEE
Q 001311          677 AGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFT-NSGNAIL  755 (1102)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~  755 (1102)
                                                         ..|.++.-........|..       ..+....+++. |.+.+- 
T Consensus       252 -----------------------------------~~i~v~~~~~q~~~n~C~~-------~ng~C~~~C~~~~~~~~~-  288 (628)
T 4a0p_A          252 -----------------------------------MDILVFHSSRQSGWNECAS-------SNGHCSHLCLAVPVGGFV-  288 (628)
T ss_dssp             -----------------------------------CEEEEECGGGSCCCCTTTT-------TGGGCSSEEEEETTTEEE-
T ss_pred             -----------------------------------ceeeeeeecccccceEecc-------CCCCcchhhhcCCCCCee-
Confidence                                               0011111100000001110       00111112221 223221 


Q ss_pred             EeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcC
Q 001311          756 ALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMM  835 (1102)
Q Consensus       756 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~  835 (1102)
                      +.+..|...                                        .....+|.   +...+|+.+....|+-..+.
T Consensus       289 C~C~~g~~l----------------------------------------~~d~~~C~---~~~~~Ll~s~~~~i~~i~l~  325 (628)
T 4a0p_A          289 CGCPAHYSL----------------------------------------NADNRTCS---APTTFLLFSQKSAINRMVID  325 (628)
T ss_dssp             EECSTTCEE----------------------------------------CTTSSCEE---CCSSEEEEEETTEEEEECCC
T ss_pred             EEcCCCcEe----------------------------------------cccCCcCc---cccceeeeeccceEEEEecc
Confidence            122222110                                        11112232   12456666666777766665


Q ss_pred             CCcee-eeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc------ccccceeEEEecCCCEE-E
Q 001311          836 TFKTM-ATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG------HSKRITGLAFSHALNVL-V  906 (1102)
Q Consensus       836 ~~~~~-~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~------h~~~V~~l~~s~d~~~l-~  906 (1102)
                      ..... ..+.. .-..+.+++|.+.+++++.+=...+.|+.+++........+..      ....+.+|++...++.| +
T Consensus       326 ~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~  405 (628)
T 4a0p_A          326 EQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYW  405 (628)
T ss_dssp             TTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEE
T ss_pred             cccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEE
Confidence            33211 12221 2345889999994455555444567888887654332222222      23457889998876655 5


Q ss_pred             EEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEE-EeCC--eEEEEEcCCceEeeeeccCCC
Q 001311          907 SSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLV-VHET--QLAIFETTKLECVKQWVPRES  982 (1102)
Q Consensus       907 s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~-~~d~--~i~iwd~~~~~~~~~~~~~~h  982 (1102)
                      +-+..+.|.+.++++. ... .+..   ...   .....+++.| .|.++.+ ....  .|...+++.... ..+.. ..
T Consensus       406 td~~~~~I~v~~~~G~-~~~-~l~~---~~l---~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~-~~l~~-~~  475 (628)
T 4a0p_A          406 TCEATNVINVTRLDGR-SVG-VVLK---GEQ---DRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER-EVLFF-SG  475 (628)
T ss_dssp             EETTTTEEEEEETTSC-EEE-EEEE---CTT---CCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC-EEEEC-SS
T ss_pred             EcCCCCEEEEEECCCC-eEE-EEEe---CCC---CceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc-EEEEe-cc
Confidence            6667788999998753 211 1111   111   2468999999 5665555 2333  566666654332 22221 22


Q ss_pred             CCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEE
Q 001311          983 SAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1061 (1102)
Q Consensus       983 ~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~ 1061 (1102)
                      -...+.|+++++++.|+.+. ..+.|...+++.. ....+..      +   ....|.+++...  +.++.+-...+.|.
T Consensus       476 l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~------~---~~~~P~glav~~--~~ly~tD~~~~~i~  543 (628)
T 4a0p_A          476 LSKPIALALDSRLGKLFWADSDLRRIESSDLSGA-NRIVLED------S---NILQPVGLTVFE--NWLYWIDKQQQMIE  543 (628)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEEC------S---SCSCEEEEEEET--TEEEEEETTTTEEE
T ss_pred             CCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC-ceEEEEc------C---CCCCcEEEEEEC--CEEEEEECCCCeEE
Confidence            45679999999877776665 4588999998544 3333321      0   112355777654  56666666677888


Q ss_pred             EEeccCCC
Q 001311         1062 VFEPLESE 1069 (1102)
Q Consensus      1062 vW~~~~~~ 1069 (1102)
                      ..|..+++
T Consensus       544 ~~~k~~G~  551 (628)
T 4a0p_A          544 KIDMTGRE  551 (628)
T ss_dssp             EEETTSSS
T ss_pred             EEECcCCC
Confidence            88877666

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.19  E-value=1.1e-08  Score=112.26  Aligned_cols=232  Identities=12%  Similarity=0.009  Sum_probs=148.3

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY  427 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~  427 (1102)
                      -..+.+|+|+++.+++++..++.|.+||..+++....                     .+...|.+++|+|+|+++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~v~~i~~~~dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH---------------------ALPFMGSALAKISDSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---------------------ECSSCEEEEEEEETTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------ECCCcceEEEEeCCCeEEEEE-
Confidence            3578899999887888888899999999988764321                     113579999999999988765 


Q ss_pred             CCCeEEEEEccCCceeeeEEEeec--cccCEEEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCeeeEEeecCCCC
Q 001311          428 SRHIVQIYSYHGGDEVRQHLEIDA--HVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       428 ~d~~v~vwd~~~~~~~~~~~~l~~--h~~~V~~v~~s~d~~~~~l~s~~~------d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      .+ .|.+||..+++... +.....  ....+.+++++++|+  ++++...      .+.|..+|  +++... +..+...
T Consensus       108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~  180 (326)
T 2ghs_A          108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISI  180 (326)
T ss_dssp             TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESS
T ss_pred             CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcc
Confidence            44 49999998876432 211111  124689999999998  4444432      24455555  555433 3233345


Q ss_pred             eEEEeeeecCCccEE-EEEeCCCeEEEEEcC--CCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311          500 VYSVCPHHKENIQFI-FSTALDGKIKAWLYD--NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  576 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  576 (1102)
                      ...++|+  ++++.+ ++.+.++.|.+||++  ++-...     ...+. ..+..         .......++++++|++
T Consensus       181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~-----~~~~~-~~~~~---------~~~~p~gi~~d~~G~l  243 (326)
T 2ghs_A          181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTG-----KAEVF-IDSTG---------IKGGMDGSVCDAEGHI  243 (326)
T ss_dssp             EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSS-----CCEEE-EECTT---------SSSEEEEEEECTTSCE
T ss_pred             cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCccc-----CceEE-EECCC---------CCCCCCeeEECCCCCE
Confidence            6778874  555655 444567899999986  320110     00000 00000         0123345677777777


Q ss_pred             EEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc-CCCCEEEEEECCC
Q 001311          577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTNDN  628 (1102)
Q Consensus       577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg  628 (1102)
                      .++...++.|.+||. +++.+..+....  ..+.+++|+ +++..|++++..+
T Consensus       244 wva~~~~~~v~~~d~-~g~~~~~i~~~~--~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          244 WNARWGEGAVDRYDT-DGNHIARYEVPG--KQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEEEETTTEEEEECT-TCCEEEEEECSC--SBEEEEEEESTTSCEEEEEEBCT
T ss_pred             EEEEeCCCEEEEECC-CCCEEEEEECCC--CCcEEEEEecCCCCEEEEEecCC
Confidence            777667789999998 677777766443  258899998 8888777665543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.17  E-value=8e-09  Score=124.65  Aligned_cols=79  Identities=11%  Similarity=0.058  Sum_probs=59.3

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccc-ccceeEEEecCCCEE
Q 001311          827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHS-KRITGLAFSHALNVL  905 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l  905 (1102)
                      |.|..||+.+++.+..+.. ...+....+.. ++.++++++.||.+++||..+++.+..+.... ....-+.|..+|+.+
T Consensus       457 g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~  534 (677)
T 1kb0_A          457 GRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (677)
T ss_dssp             EEEEEEETTTTEEEEEEEE-SSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEEEeCCCCcEEeecCC-CCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEE
Confidence            6799999999998877753 33344555666 67788889999999999999999998886433 333457777888755


Q ss_pred             EE
Q 001311          906 VS  907 (1102)
Q Consensus       906 ~s  907 (1102)
                      +.
T Consensus       535 v~  536 (677)
T 1kb0_A          535 VS  536 (677)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=1.1e-09  Score=121.39  Aligned_cols=251  Identities=12%  Similarity=0.068  Sum_probs=147.3

Q ss_pred             CCeeEEEEecCCCeEEEEEe--cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          347 SSPMSMDFHPVQQTLLLVGT--NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~--~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      ..+..|+++|+|+. +++..  .++.+.||.+.+++..   .|..|.          ....+|-..+..++|+++|++++
T Consensus        17 ~~p~~va~~~~g~~-~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGRL-FLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSCE-EEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCCE-EEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence            67899999999984 66643  2343666666555432   122111          01235667899999999998777


Q ss_pred             EEEC-----CCeEEEEEccCCceeeeEEEee----ccccCEEEEEEcCCCCeeEEEEec---CCCcEEEEeCCCCeeeEE
Q 001311          425 VAYS-----RHIVQIYSYHGGDEVRQHLEID----AHVGGVNDIAFSHPNKQLCVITCG---DDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       425 s~~~-----d~~v~vwd~~~~~~~~~~~~l~----~h~~~V~~v~~s~d~~~~~l~s~~---~d~~i~vWd~~~~~~~~~  492 (1102)
                      +-..     ++.|.+||+.+++.++.. .+.    .+...+..+++++++.. ++++..   .++.|.+||+.+++..+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            6544     578999999998755432 221    12345789999987654 456655   678999999999988777


Q ss_pred             eecCCC-----------------------------CeEEEeeeecCCccEEEEEeCCC-eEEEEEcCC--CCCeeeecCC
Q 001311          493 FEGHEA-----------------------------PVYSVCPHHKENIQFIFSTALDG-KIKAWLYDN--LGSRVDYEAP  540 (1102)
Q Consensus       493 ~~~h~~-----------------------------~v~~v~~~~~~~~~~l~s~s~dg-~i~~wd~~~--~~~~~~~~~~  540 (1102)
                      +.+|..                             .+..++|  +++++.|+.+..++ .|..++...  ......-.. 
T Consensus       161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~--s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~-  237 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVL--DAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAEL-  237 (343)
T ss_dssp             CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEE--CTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHH-
T ss_pred             ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEe--ccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhh-
Confidence            755421                             1234444  23344444444333 222222110  000000000 


Q ss_pred             CCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE
Q 001311          541 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL  620 (1102)
Q Consensus       541 ~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  620 (1102)
                      ...+.           ..+. ......++++++|+.+++...++.|.+||..+++...... ........+++|.+++.+
T Consensus       238 ~~~~~-----------~~g~-~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~~~~~~p~~va~~~~g~l  304 (343)
T 2qe8_A          238 GSKIE-----------RYSE-KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-DEKLSWTDSFNFGSDGYL  304 (343)
T ss_dssp             HTTCE-----------EEEE-CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-CGGGSCEEEEEECTTSCE
T ss_pred             hcceE-----------eccc-CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-CCceecCCeeEECCCCcE
Confidence            00000           0000 1123347888888888888889999999985666433332 212335678999998887


Q ss_pred             EEEEECCCc
Q 001311          621 LAVSTNDNG  629 (1102)
Q Consensus       621 l~~~~~dg~  629 (1102)
                      +++....+.
T Consensus       305 ~v~~~~~~~  313 (343)
T 2qe8_A          305 YFDCNQLHH  313 (343)
T ss_dssp             EEEECCGGG
T ss_pred             EEEeCcccc
Confidence            777654433

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.17  E-value=2.9e-08  Score=111.63  Aligned_cols=158  Identities=8%  Similarity=0.042  Sum_probs=100.3

Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeEEEeecc-------ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAH-------VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY  491 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h-------~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~  491 (1102)
                      ++..|.+++.++.|..+|.++|+.+-.. .+...       ...+.+.... ++.  .++.++.++.|..+|..+|+.+.
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSV-SLAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW  127 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEE-ECCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeee-cCccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence            4778888888999999999999866432 12111       2233332222 334  47777889999999999999987


Q ss_pred             EeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311          492 IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  571 (1102)
Q Consensus       492 ~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  571 (1102)
                      ..............  . + ..++.++.++.|..+|..+++............ .  ....             ....+.
T Consensus       128 ~~~~~~~~~~~p~~--~-~-~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~-~--~~~~-------------~~~~~~  187 (376)
T 3q7m_A          128 QTKVAGEALSRPVV--S-D-GLVLIHTSNGQLQALNEADGAVKWTVNLDMPSL-S--LRGE-------------SAPTTA  187 (376)
T ss_dssp             EEECSSCCCSCCEE--E-T-TEEEEECTTSEEEEEETTTCCEEEEEECCC--------CCC-------------CCCEEE
T ss_pred             EEeCCCceEcCCEE--E-C-CEEEEEcCCCeEEEEECCCCcEEEEEeCCCCce-e--ecCC-------------CCcEEE
Confidence            77644322221121  1 2 478888899999999999887776654432110 0  0000             000111


Q ss_pred             CCCCEEEEEeCCCeEEEEECCCcceEEEEcC
Q 001311          572 TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       572 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  602 (1102)
                        +..++.+..++.|..+|..+++.+.....
T Consensus       188 --~~~v~~g~~~g~l~~~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          188 --FGAAVVGGDNGRVSAVLMEQGQMIWQQRI  216 (376)
T ss_dssp             --TTEEEECCTTTEEEEEETTTCCEEEEEEC
T ss_pred             --CCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence              24577788899999999999998877653

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.17  E-value=1.1e-08  Score=112.28  Aligned_cols=225  Identities=12%  Similarity=-0.016  Sum_probs=145.0

Q ss_pred             eEEEEEccCCceE-EEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311          742 ISRLIFTNSGNAI-LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  820 (1102)
Q Consensus       742 i~~~~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~  820 (1102)
                      .....|+|++..+ ++...++.|..|+..                      ++......     ....+.+++++++|++
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~----------------------~~~~~~~~-----~~~~v~~i~~~~dg~l  103 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLA----------------------SGRKTVHA-----LPFMGSALAKISDSKQ  103 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETT----------------------TTEEEEEE-----CSSCEEEEEEEETTEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECC----------------------CCcEEEEE-----CCCcceEEEEeCCCeE
Confidence            4567899975544 444456888887753                      22211111     2346899999999988


Q ss_pred             EEEEeCCeEEEEEcCCCceeeeecC----CCCCeeEEEEecCCCcEEEEEeC------CCcEEEEEeecceeeeeecccc
Q 001311          821 VMSASGGKISLFNMMTFKTMATFMP----PPPAATFLAFHPQDNNIIAIGMD------DSSIQIYNVRVDEVKSKLKGHS  890 (1102)
Q Consensus       821 las~sdg~I~iwd~~~~~~~~~~~~----~~~~i~~l~~sp~d~~~lasg~~------dg~v~vwd~~~~~~~~~l~~h~  890 (1102)
                      +++. ++.|.+||..+++.......    ....+..++++| +|+++++...      .+.|+.++  +++.. .+..+.
T Consensus       104 ~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~  178 (326)
T 2ghs_A          104 LIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI  178 (326)
T ss_dssp             EEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE
T ss_pred             EEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC
Confidence            7765 45599999988775433221    123588999999 7887665432      24555555  55543 333334


Q ss_pred             ccceeEEEecCCCEEEE-EcCCCcEEEEEcC--CC-cccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEE
Q 001311          891 KRITGLAFSHALNVLVS-SGADSQLCVWSSD--GW-EKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAI  965 (1102)
Q Consensus       891 ~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~i  965 (1102)
                      .....++|++|++.|+. .+.++.|.+|++.  ++ +.............   ......++++++|.+.++. .++.|.+
T Consensus       179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~---~~~p~gi~~d~~G~lwva~~~~~~v~~  255 (326)
T 2ghs_A          179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGI---KGGMDGSVCDAEGHIWNARWGEGAVDR  255 (326)
T ss_dssp             SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTS---SSEEEEEEECTTSCEEEEEETTTEEEE
T ss_pred             cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCC---CCCCCeeEECCCCCEEEEEeCCCEEEE
Confidence            45678999999987654 4567889999986  54 32221222212111   1245789999999877775 5689999


Q ss_pred             EEcCCceEeeeeccCCCCCCeeEEEEc-CCCcEEEEEeCC
Q 001311          966 FETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLD 1004 (1102)
Q Consensus       966 wd~~~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~D 1004 (1102)
                      ||. +++.+..+.  .+...+++++|+ +|++.|++++..
T Consensus       256 ~d~-~g~~~~~i~--~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          256 YDT-DGNHIARYE--VPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             ECT-TCCEEEEEE--CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             ECC-CCCEEEEEE--CCCCCcEEEEEecCCCCEEEEEecC
Confidence            998 566666655  335679999998 898877655543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.17  E-value=2.4e-05  Score=92.71  Aligned_cols=503  Identities=10%  Similarity=0.051  Sum_probs=255.0

Q ss_pred             CCCeEEEEEccCCCeEEEEE-CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCC
Q 001311          408 GVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATN  486 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~-~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~  486 (1102)
                      -..+..++|++.+..|..+. ..+.|..+++++......  .+.........+++.+.+.. ++++-...+.|.+.++..
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~--v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE--EECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE--EEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence            44678999999777776654 467898999876532111  12223356889999987665 566667788999999765


Q ss_pred             CeeeEEeecCCCCeEEEeeeecCCccEEEEEe-CCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311          487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTA-LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  565 (1102)
Q Consensus       487 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s-~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  565 (1102)
                      ......+.........|++.+. +|.++++-- ..+.|...+++.............                     ..
T Consensus       116 ~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~---------------------~P  173 (619)
T 3s94_A          116 SLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIY---------------------WP  173 (619)
T ss_dssp             CSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCS---------------------SE
T ss_pred             CCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCC---------------------CC
Confidence            4333333234444566776432 233334431 234555555543222221111122                     23


Q ss_pred             eEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceee
Q 001311          566 GVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRT  644 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  644 (1102)
                      ..+++++++..|+.+. ..+.|...|++...........  .....++++..+ ....+-...+.|...|..++.. ...
T Consensus       174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~-~~~  249 (619)
T 3s94_A          174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYTGEG-LRE  249 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSSCCC-CEE
T ss_pred             cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcc-cEE
Confidence            4455555544555544 5677888888654333222211  123456787655 3444444567888888777632 222


Q ss_pred             cccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCC-
Q 001311          645 FENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS-  723 (1102)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~-  723 (1102)
                      +.....             .+.                                              .|.++.-.... 
T Consensus       250 i~~~~~-------------~p~----------------------------------------------~i~v~~~~~qp~  270 (619)
T 3s94_A          250 IHSDIF-------------SPM----------------------------------------------DIHAFSQQRQPN  270 (619)
T ss_dssp             CCSCCC-------------CCS----------------------------------------------EEEECCGGGSCC
T ss_pred             EecCCC-------------CCc----------------------------------------------EEEEEccccCCC
Confidence            211100             000                                              01111100000 


Q ss_pred             CCCccccccCCCcccccceEEEEE-ccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          724 EPNQCRSLRLPENLRATKISRLIF-TNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~i~~~~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                      ....|..       ..+....+++ +|.....-+.+.+|...                                      
T Consensus       271 ~~n~C~~-------~ng~Cs~lCl~~~~~~~~~C~C~~g~~l--------------------------------------  305 (619)
T 3s94_A          271 ATNPCGI-------DNGGCSHLCLMSPVKPFYQCACPTGVKL--------------------------------------  305 (619)
T ss_dssp             CCCTTTT-------TGGGCSSEEEECSSTTSEEEECCTTCCB--------------------------------------
T ss_pred             ccccccC-------CCCcccceEECCCCCCCceEeCCchhee--------------------------------------
Confidence            0000000       0001111111 12111111112221100                                      


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceee-eec-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          803 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~-~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                        .....+|.  .....+|+.+..+.|+..++....... .+. ..-..+.+++|++.+++++++-...+.|+.+++...
T Consensus       306 --~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~  381 (619)
T 3s94_A          306 --LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS  381 (619)
T ss_dssp             --CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             --cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC
Confidence              00001111  112346666667788888887654321 121 123458899999845555555556788999887654


Q ss_pred             eeeeeeccccccceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-
Q 001311          881 EVKSKLKGHSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-  958 (1102)
Q Consensus       881 ~~~~~l~~h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-  958 (1102)
                      .....+........+|++...+. +.++-+..+.|.+.++++...  ..+.   ...   ......+++.|...+|..+ 
T Consensus       382 ~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~--~~l~---~~~---l~~P~~iavdp~~G~ly~tD  453 (619)
T 3s94_A          382 GSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR--KILI---SED---LEEPRAIVLDPMVGYMYWTD  453 (619)
T ss_dssp             SCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE---CTT---CCSEEEEEEETTTTEEEEEE
T ss_pred             ccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--EEEE---ECC---CCCeeeEEEEcCCCcEEEec
Confidence            33233333335677899986544 555656678899999886432  1111   111   1256899999974444443 


Q ss_pred             --eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCc
Q 001311          959 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSN 1035 (1102)
Q Consensus       959 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~ 1035 (1102)
                        ....|...+++..... .+. ...-.....|++++++..|+.+. ..+.|..++++.......+...  +        
T Consensus       454 ~g~~~~I~r~~~dG~~~~-~l~-~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--l--------  521 (619)
T 3s94_A          454 WGEIPKIERAALDGSDRV-VLV-NTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDK--I--------  521 (619)
T ss_dssp             CSSSCEEEEEETTSCSCE-EEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECC--C--------
T ss_pred             CCCCCEEEEEccCCCccE-EEE-eCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccC--C--------
Confidence              2356776666543322 222 12345788999998777666554 4578999998654332222100  1        


Q ss_pred             ccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1036 VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1036 v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      ..|.+++...  +.+.++-...+.|..-+..++.
T Consensus       522 ~~P~glav~~--~~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          522 PHIFGFTLLG--DYVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             CSSCCEEEET--TEEEEECTTSSCEEEEESSSCC
T ss_pred             CCcEEEEEEC--CEEEEeecCCCeEEEEEcCCCc
Confidence            1233566553  3555555556778777777764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.16  E-value=6.5e-09  Score=125.74  Aligned_cols=191  Identities=15%  Similarity=0.132  Sum_probs=126.3

Q ss_pred             eEEEEecCCCcEEEEEeCCCc-------------------EEEEEeecceeeeeecc--cc-------ccceeEEEecCC
Q 001311          851 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL  902 (1102)
Q Consensus       851 ~~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~  902 (1102)
                      ..++++| +..++++++.++.                   |..||..+|+.+..++.  |.       ..+.-.....+|
T Consensus       238 ~~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G  316 (689)
T 1yiq_A          238 DSFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDG  316 (689)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence            3678999 7788888888764                   99999999998877653  22       111112222366


Q ss_pred             C---EEEEEcCCCcEEEEEcCCCcccceeeeec------------------------CCCCC-------CCCCCCcEEEE
Q 001311          903 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI------------------------PTGRT-------PTAQSDTRVQF  948 (1102)
Q Consensus       903 ~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~------------------------~~~~~-------~~~~~v~~~~~  948 (1102)
                      +   .|+.++.+|.++++|..+++.........                        ..+..       .....-..++|
T Consensus       317 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~  396 (689)
T 1yiq_A          317 KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY  396 (689)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred             cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence            5   78899999999999999988642111100                        00000       00001134789


Q ss_pred             ccCCcEEEEE-e---------------------------------------------CCeEEEEEcCCceEeeeeccCCC
Q 001311          949 HQDQIHFLVV-H---------------------------------------------ETQLAIFETTKLECVKQWVPRES  982 (1102)
Q Consensus       949 spdg~~l~~~-~---------------------------------------------d~~i~iwd~~~~~~~~~~~~~~h  982 (1102)
                      +|+..++++. .                                             ++.|..||+.+++.+-.+..+  
T Consensus       397 dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~--  474 (689)
T 1yiq_A          397 NPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV--  474 (689)
T ss_dssp             ETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES--
T ss_pred             CCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC--
Confidence            9988877763 1                                             367999999999988776532  


Q ss_pred             CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEe
Q 001311          983 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL 1055 (1102)
Q Consensus       983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~ 1055 (1102)
                       .++..-.++..+.++++++.||.|++||..+|+.+.+++    ++.+     +...-+.|.. ||+ ++++.+
T Consensus       475 -~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~----~~~~-----~~~~p~ty~~-~G~qyv~~~~  537 (689)
T 1yiq_A          475 -TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQP----AASG-----VMAAPVTYSV-DGEQYVTFMA  537 (689)
T ss_dssp             -SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCCEEEEE-TTEEEEEEEE
T ss_pred             -CCccCccceECCCEEEEECCCCcEEEEECCCCccceeee----CCCC-----cccCceEEEE-CCEEEEEEEe
Confidence             233334566688899999999999999999999998887    4433     2222466666 455 455443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.15  E-value=4.8e-09  Score=128.08  Aligned_cols=242  Identities=12%  Similarity=0.088  Sum_probs=157.6

Q ss_pred             cccceEEEEEccCCceEEEeec-----CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEE
Q 001311          738 RATKISRLIFTNSGNAILALAS-----NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCF  812 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l  812 (1102)
                      +...+..++|||||++++.+..     +..|++||+                      .+|+.+...+    .......+
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl----------------------~tg~~~~~~~----~~~k~~~~  180 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDV----------------------ESKQPLETPL----KDVKFSGI  180 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEET----------------------TTCSEEEEEE----EEEESCCC
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEEC----------------------CCCCCCcccc----CCceeccE
Confidence            4457888999999998885432     245666665                      4444322111    11113567


Q ss_pred             EEecCCCeEEEEe-CC-------------eEEEEEcCCCce----eeeecC-CCCCeeEEEEecCCCcEEEEEeC----C
Q 001311          813 ALSKNDSYVMSAS-GG-------------KISLFNMMTFKT----MATFMP-PPPAATFLAFHPQDNNIIAIGMD----D  869 (1102)
Q Consensus       813 ~~s~d~~~las~s-dg-------------~I~iwd~~~~~~----~~~~~~-~~~~i~~l~~sp~d~~~lasg~~----d  869 (1102)
                      +|+ |++.|+.++ +.             .|++|++.+...    +..... |......+.|+| |+++|+....    +
T Consensus       181 ~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~  258 (693)
T 3iuj_A          181 SWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSG  258 (693)
T ss_dssp             EEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSC
T ss_pred             EEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCC
Confidence            899 999998887 53             399999987653    222333 445578899999 8887765443    2


Q ss_pred             CcEEEEEeecce-eeeeeccccccceeEEEecCCCEEEE-EcCC---CcEEEEEcCCCcccceeeeecCCCCCCCCCCCc
Q 001311          870 SSIQIYNVRVDE-VKSKLKGHSKRITGLAFSHALNVLVS-SGAD---SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  944 (1102)
Q Consensus       870 g~v~vwd~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~s-~s~D---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  944 (1102)
                      ..|+++|+.++. ....+..+....... |+++|..|+. ...|   +.|.+|++.+++......+..   +.   ..+.
T Consensus       259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~---~~---~~~~  331 (693)
T 3iuj_A          259 NRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIP---ER---QQVL  331 (693)
T ss_dssp             CEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC---CC---SSCE
T ss_pred             cEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEec---CC---CCEE
Confidence            489999987753 455666666666655 6667666554 4333   579999998865433232221   11   1233


Q ss_pred             EEEEccCCcEEEEE--eCC--eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC----CeEEEEEcCCce
Q 001311          945 RVQFHQDQIHFLVV--HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCVFSAANLK 1016 (1102)
Q Consensus       945 ~~~~spdg~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D----g~I~vwd~~~~~ 1016 (1102)
                        .|++++++|+..  .++  .|++|++.++.. ..+.. .+.+.+..+.+++|++.|+....+    ++|+.||+.+++
T Consensus       332 --~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~-~~l~~-p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          332 --TVHSGSGYLFAEYMVDATARVEQFDYEGKRV-REVAL-PGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             --EEEEETTEEEEEEEETTEEEEEEECTTSCEE-EEECC-SSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             --EEEEECCEEEEEEEECCeeEEEEEECCCCee-EEeec-CCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence              899999998874  454  688999886543 33332 234567788889998877666555    889999998886


Q ss_pred             eE
Q 001311         1017 LR 1018 (1102)
Q Consensus      1017 ~~ 1018 (1102)
                      ..
T Consensus       408 ~~  409 (693)
T 3iuj_A          408 IS  409 (693)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.15  E-value=6.7e-10  Score=122.02  Aligned_cols=177  Identities=11%  Similarity=0.030  Sum_probs=131.5

Q ss_pred             CeEEEEEccCCCeEEEEECCCeEEEEEccCCce--------eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE--------VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       410 ~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~--------~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                      .++.+++++...++++|+.++ +++|+++....        .... ....+.. |+.|+|  |++  +|+++ .++.|++
T Consensus        39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~-~~~~lp~-V~~l~f--d~~--~L~v~-~~~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFK-WEKEIPD-VIFVCF--HGD--QVLVS-TRNALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCS-EEEECTT-EEEEEE--ETT--EEEEE-ESSEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccce-EEeeCCC-eeEEEE--CCC--EEEEE-cCCcEEE
Confidence            699999999999999999986 55699765430        1111 1224666 999999  888  67777 8899999


Q ss_pred             EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311          482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  561 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  561 (1102)
                      ||+.+.........|...+.++.+.  ..  .+++++.||.|.+||+.+.....    .                     
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~--~p--~~av~~~dG~L~v~dl~~~~~~~----~---------------------  161 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNV--NN--TLVILNSVNDLSALDLRTKSTKQ----L---------------------  161 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEEC--SS--EEEEEETTSEEEEEETTTCCEEE----E---------------------
T ss_pred             EEchhhhccCccceeecceeeEEec--CC--CEEEEECCCCEEEEEccCCcccc----c---------------------
Confidence            9999877766777788888887653  22  28888999999999998654321    0                     


Q ss_pred             cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcce--EEEEcC-------CCCCCCcCeEEEcCCCCEEEEEE
Q 001311          562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQL--LTSIDA-------DGGLPASPRIRFNKDGCLLAVST  625 (1102)
Q Consensus       562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~-------~~~~~~v~~~~~s~~~~~l~~~~  625 (1102)
                      ...+.+++|+|+|  ++.|..||.+++|+...+..  ...+..       ..+...|.++.|.+++.++++-.
T Consensus       162 ~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          162 AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            1256677777777  67889999999999987775  555621       12345799999999999888644

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.15  E-value=1e-08  Score=123.95  Aligned_cols=78  Identities=13%  Similarity=0.053  Sum_probs=59.1

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ceeEEEecCCCEE
Q 001311          827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALNVL  905 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l  905 (1102)
                      |.|..||+.+++.+..+..+.. +..-.+.. .+.++++|+.||.|+.||.++|+.+.+++...+. ..-+.|..||+..
T Consensus       455 g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qy  532 (689)
T 1yiq_A          455 GKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQY  532 (689)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             eeEEEEECCCCCeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEE
Confidence            6799999999998887764433 33335555 6778999999999999999999999888654333 3457788888754


Q ss_pred             E
Q 001311          906 V  906 (1102)
Q Consensus       906 ~  906 (1102)
                      +
T Consensus       533 v  533 (689)
T 1yiq_A          533 V  533 (689)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=6.2e-09  Score=113.14  Aligned_cols=228  Identities=11%  Similarity=0.030  Sum_probs=150.0

Q ss_pred             cceEEEEEccCCce-EEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC
Q 001311          740 TKISRLIFTNSGNA-ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND  818 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~  818 (1102)
                      .......|+++|+. +++...++.|..|+..                       +.....  ..  +...+..++++++|
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-----------------------g~~~~~--~~--~~~~~~gl~~d~dG   97 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-----------------------GTVDVL--LD--ATAFTNGNAVDAQQ   97 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-----------------------SCEEEE--EE--SCSCEEEEEECTTS
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-----------------------CCEEEE--eC--CCCccceeeECCCC
Confidence            45568899999984 4555557888888641                       111100  00  34568899999999


Q ss_pred             CeEEEEe-CCeEEEEEcCCCceeeeec---CC-CCCeeEEEEecCCCcEEEE----EeC-------------CCcEEEEE
Q 001311          819 SYVMSAS-GGKISLFNMMTFKTMATFM---PP-PPAATFLAFHPQDNNIIAI----GMD-------------DSSIQIYN  876 (1102)
Q Consensus       819 ~~las~s-dg~I~iwd~~~~~~~~~~~---~~-~~~i~~l~~sp~d~~~las----g~~-------------dg~v~vwd  876 (1102)
                      +++++.. ++.|.+|+.. ++......   +. ...+..+++++ +|+++++    |..             .+.|+.||
T Consensus        98 ~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d  175 (305)
T 3dr2_A           98 RLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP  175 (305)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred             CEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence            9776665 5789999986 44322211   11 23477899999 8888876    332             25677777


Q ss_pred             eecceeeeeeccccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311          877 VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       877 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      ..+++.....  .......++|+||++.|+.+...      +.|.+|++..+............     ......+++++
T Consensus       176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~-----~~~pdgi~~d~  248 (305)
T 3dr2_A          176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVP-----DGLPDGFCVDR  248 (305)
T ss_dssp             SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCS-----SSCCCSEEECT
T ss_pred             CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECC-----CCCCCeEEECC
Confidence            7666654333  44456789999999988777655      68999998765421112221111     12457899999


Q ss_pred             CCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEE
Q 001311          951 DQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVC 1008 (1102)
Q Consensus       951 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~ 1008 (1102)
                      +|++.++. .+.|.+|+. +++.+..+...   ..+.+++|++|++.|+.++.++..+
T Consensus       249 ~G~lwv~~-~~gv~~~~~-~g~~~~~~~~~---~~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          249 GGWLWSSS-GTGVCVFDS-DGQLLGHIPTP---GTASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             TSCEEECC-SSEEEEECT-TSCEEEEEECS---SCCCEEEECTTSCEEEEEETTEEEE
T ss_pred             CCCEEEec-CCcEEEECC-CCCEEEEEECC---CceeEEEEeCCCCEEEEEcCCeEEE
Confidence            99955544 456999998 46666665532   2589999999999888887765433

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.09  E-value=2.2e-08  Score=113.80  Aligned_cols=244  Identities=12%  Similarity=0.093  Sum_probs=167.0

Q ss_pred             EEEec-----CCCeEEEEe--CCeEEEEEcCCCceeeeecCC-CCCeeEEEE-e-cCCCcEEEEEe--------------
Q 001311          812 FALSK-----NDSYVMSAS--GGKISLFNMMTFKTMATFMPP-PPAATFLAF-H-PQDNNIIAIGM--------------  867 (1102)
Q Consensus       812 l~~s~-----d~~~las~s--dg~I~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-p~d~~~lasg~--------------  867 (1102)
                      ..+|.     ||+++.+..  ++.|.+.|+.+.++.+.+.-. ...+..+++ + | +++++++++              
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~  168 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME  168 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence            55555     999998877  577999999999988854322 345888888 4 8 788888774              


Q ss_pred             ----CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC-------------------------------
Q 001311          868 ----DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS-------------------------------  912 (1102)
Q Consensus       868 ----~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-------------------------------  912 (1102)
                          .++.+.+.|..+.+...++.--. .-..++++|||+++++.+.+.                               
T Consensus       169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~  247 (595)
T 1fwx_A          169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  247 (595)
T ss_dssp             CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence                34589999999988887775322 346788999999999888553                               


Q ss_pred             -------cEEEEEcCCCcccc-eeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce----------
Q 001311          913 -------QLCVWSSDGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----------  972 (1102)
Q Consensus       913 -------~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~----------  972 (1102)
                             .|.|.|..+.+... ...+..  +     ....++.++|||++++++  .+.+|.++|+.+.+          
T Consensus       248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipv--g-----~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~  320 (595)
T 1fwx_A          248 GDYQELNGVKVVDGRKEASSLFTRYIPI--A-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPR  320 (595)
T ss_dssp             TCSEEETTEEEEECSGGGCCSSEEEEEE--E-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGG
T ss_pred             CCeeEECcEEEEeCcccCCceeEEEEec--C-----CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcc
Confidence                   35566655521000 111111  1     245789999999999985  67899999999763          


Q ss_pred             --EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC----------ceeEEEeCCCcccCCCCCCCcccceE
Q 001311          973 --CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLV 1040 (1102)
Q Consensus       973 --~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~----------~~~~~~~~~~~~~~~gh~~~~v~~~~ 1040 (1102)
                        .+.....   ......++|++||...++.-.|+.|.+||+++          ...+.++... +.| ||.   -..++
T Consensus       321 ~~v~~~v~v---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqp-Gh~---~~~~g  392 (595)
T 1fwx_A          321 SAVVAEPEL---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQP-GHL---KTVMG  392 (595)
T ss_dssp             GGEEECCBC---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCE-EEE---EETTT
T ss_pred             cceEEEcCC---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-ccc-ccc---eeccc
Confidence              3333332   45789999999995455666899999999988          5667777632 222 110   11234


Q ss_pred             EEecCCCCCEEEEEec---CCc----------EEEEeccCCCcccc
Q 001311         1041 IAAHPQEPNEFALGLS---DGG----------VHVFEPLESEGKWG 1073 (1102)
Q Consensus      1041 v~f~p~d~~~l~s~~~---Dg~----------v~vW~~~~~~~~~~ 1073 (1102)
                      +.++| ||++|++...   |+-          -.++|++.++.++.
T Consensus       393 ~t~~~-DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv  437 (595)
T 1fwx_A          393 ETLDA-TNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV  437 (595)
T ss_dssp             TSTTC-CSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred             eEeCC-CCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence            56778 6888887654   332          28899977664333

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.09  E-value=7.4e-08  Score=108.26  Aligned_cols=233  Identities=9%  Similarity=0.066  Sum_probs=140.1

Q ss_pred             EEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCc
Q 001311          362 LLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD  441 (1102)
Q Consensus       362 lasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~  441 (1102)
                      +++++.++.|..+|..+|+.+........       . .  ........+. .....++..+.+++.++.|..+|.++|+
T Consensus        56 v~~~~~~g~v~a~d~~tG~~~W~~~~~~~-------~-~--~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~~tG~  124 (376)
T 3q7m_A           56 VYAADRAGLVKALNADDGKEIWSVSLAEK-------D-G--WFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNTSDGT  124 (376)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCC-------------CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEETTTCC
T ss_pred             EEEEcCCCeEEEEEccCCceeeeecCccc-------c-c--cccccCcccc-cCceEeCCEEEEEcCCCEEEEEECCCCC
Confidence            77778889999999999988754322100       0 0  0000012222 2222356788889999999999999998


Q ss_pred             eeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe-----EEEeeeecCCccEEEE
Q 001311          442 EVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV-----YSVCPHHKENIQFIFS  516 (1102)
Q Consensus       442 ~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v-----~~v~~~~~~~~~~l~s  516 (1102)
                      .+-..   ............ .++   .++.++.++.|..+|..+|+.+..+.......     .....  .  +..++.
T Consensus       125 ~~W~~---~~~~~~~~~p~~-~~~---~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~--~~~v~~  193 (376)
T 3q7m_A          125 VAWQT---KVAGEALSRPVV-SDG---LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--A--FGAAVV  193 (376)
T ss_dssp             EEEEE---ECSSCCCSCCEE-ETT---EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--E--TTEEEE
T ss_pred             EEEEE---eCCCceEcCCEE-ECC---EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--E--CCEEEE
Confidence            65432   212111111122 234   47778889999999999999988776432211     11111  1  246888


Q ss_pred             EeCCCeEEEEEcCCCCCeeeecCCCCe----eeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECC
Q 001311          517 TALDGKIKAWLYDNLGSRVDYEAPGRW----CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMD  592 (1102)
Q Consensus       517 ~s~dg~i~~wd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~  592 (1102)
                      ++.++.|..+|..+++...........    +..+. .....         +    .+  .+..++.++.++.+..+|..
T Consensus       194 g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~-~~~~~---------p----~~--~~~~v~~~~~~g~l~~~d~~  257 (376)
T 3q7m_A          194 GGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS-DVDTT---------P----VV--VNGVVFALAYNGNLTALDLR  257 (376)
T ss_dssp             CCTTTEEEEEETTTCCEEEEEECCC------------CCCCC---------C----EE--ETTEEEEECTTSCEEEEETT
T ss_pred             EcCCCEEEEEECCCCcEEEEEecccCCCCccccccc-ccCCC---------c----EE--ECCEEEEEecCcEEEEEECC
Confidence            888999999999988776655432110    00000 00000         0    00  13457778889999999999


Q ss_pred             CcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          593 SVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       593 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +++.+......    ....+..  ++..+++++.++.|..+|..++
T Consensus       258 tG~~~w~~~~~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          258 SGQIMWKRELG----SVNDFIV--DGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             TCCEEEEECCC----CEEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred             CCcEEeeccCC----CCCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence            99888776532    2223333  4667777888888888887776

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.07  E-value=5.6e-08  Score=106.47  Aligned_cols=230  Identities=11%  Similarity=0.133  Sum_probs=148.5

Q ss_pred             cCCCeEEEEe--CCeEEEEEcCCC----ceeeeecC-------CCCCeeEEEEecCCCcEEEEEeCC------CcEEEEE
Q 001311          816 KNDSYVMSAS--GGKISLFNMMTF----KTMATFMP-------PPPAATFLAFHPQDNNIIAIGMDD------SSIQIYN  876 (1102)
Q Consensus       816 ~d~~~las~s--dg~I~iwd~~~~----~~~~~~~~-------~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd  876 (1102)
                      .++++|++.+  ++.|.++|+.+.    +..+++..       .......+..+| ++ +++++..+      |.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEE
Confidence            7888888877  688999999754    45555520       112355678889 77 66666555      7899999


Q ss_pred             eecceeeeeeccccc---cceeEEEecCCCEEEEEc-------------------CCCcEEEEEcCCCcccceeeeecCC
Q 001311          877 VRVDEVKSKLKGHSK---RITGLAFSHALNVLVSSG-------------------ADSQLCVWSSDGWEKQKNRFLQIPT  934 (1102)
Q Consensus       877 ~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~s~s-------------------~Dg~i~vwd~~~~~~~~~~~~~~~~  934 (1102)
                      ..+++.+.++..-..   --..+.|+|+++.+++..                   .+.+|.+||+.+++...  .+..-.
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--tI~vg~  248 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--SLTLGE  248 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--EEESCT
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--EEecCC
Confidence            999999988863222   234588899999999885                   36789999999864322  222210


Q ss_pred             CCCCCCCCCcEEEE--ccCCcEEEEE-------eCCeEEEEEcCCceEeee--e--cc---CC-----------CCCCee
Q 001311          935 GRTPTAQSDTRVQF--HQDQIHFLVV-------HETQLAIFETTKLECVKQ--W--VP---RE-----------SSAPIT  987 (1102)
Q Consensus       935 ~~~~~~~~v~~~~~--spdg~~l~~~-------~d~~i~iwd~~~~~~~~~--~--~~---~~-----------h~~~v~  987 (1102)
                      .    ......+.|  +|+|+++.++       .+++|.+|..+.++....  +  ..   .+           -...+.
T Consensus       249 ~----g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          249 E----NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             T----EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             C----CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            0    012345555  9999998874       345787766554432111  1  00   00           024578


Q ss_pred             EEEEcCCCcEEEEEeC-CCeEEEEEcC---CceeEEEeCCCccc-----CCCCCCCcccceEEEecCCCCCEEEEEe
Q 001311          988 HATFSCDSQLVYACFL-DATVCVFSAA---NLKLRCRINPSAYL-----PAGVSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus       988 ~l~~spd~~~l~s~s~-Dg~I~vwd~~---~~~~~~~~~~~~~~-----~~gh~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
                      .+.+|+||++|.++.. .+.|.+||+.   +.+++.++......     +.|. .....|-.+.++| ||++|.++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~-~~~ggPr~~~lSp-DGk~LyVaN  399 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGH-KLTGAPQMLEISR-DGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSC-CCCSCCCCEEECT-TSSEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccc-cCCCCCCEEEEcC-CCCEEEEEc
Confidence            8999999999987765 6899999986   34666666532110     0010 0001355799999 678888777

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.07  E-value=8.1e-09  Score=113.29  Aligned_cols=252  Identities=11%  Similarity=-0.018  Sum_probs=154.2

Q ss_pred             CeEEEEEecCC----eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE-------
Q 001311          359 QTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-------  427 (1102)
Q Consensus       359 ~~llasg~~d~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-------  427 (1102)
                      .+++++...++    +|.+.|..+++.+...                  -.+. .+  .++|||||++|.++.       
T Consensus        32 ~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i------------------~vG~-~P--~i~~spDg~~lyVan~~~~r~~   90 (368)
T 1mda_H           32 RRSHITLPAYFAGTTENWVSCAGCGVTLGHS------------------LGAF-LS--LAVAGHSGSDFALASTSFARSA   90 (368)
T ss_dssp             TEEEEEECTTTCSSEEEEEEETTTTEEEEEE------------------EECT-TC--EEEECTTSSCEEEEEEEETTTT
T ss_pred             CeEEEECCccCCccceEEEEECCCCeEEEEE------------------eCCC-CC--ceEECCCCCEEEEEcccccccc
Confidence            44566666555    8889999999998752                  2232 24  799999999999986       


Q ss_pred             ---CCCeEEEEEccCCceeeeEEEeec-c----ccCEEEEEEcCCCCeeEEEEec--CCCcEEE--EeCCCCeeeEEeec
Q 001311          428 ---SRHIVQIYSYHGGDEVRQHLEIDA-H----VGGVNDIAFSHPNKQLCVITCG--DDKTIKV--WDATNGAKQYIFEG  495 (1102)
Q Consensus       428 ---~d~~v~vwd~~~~~~~~~~~~l~~-h----~~~V~~v~~s~d~~~~~l~s~~--~d~~i~v--Wd~~~~~~~~~~~~  495 (1102)
                         .++.|.+||..+++.+..+. +.+ .    ......++|+|||+.  ++.+.  .+..|.+  +|+.+   +.++.-
T Consensus        91 ~G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v  164 (368)
T 1mda_H           91 KGKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKS  164 (368)
T ss_dssp             SSSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEEC
T ss_pred             cCCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEEC
Confidence               36889999999998776532 210 0    123567999999995  44433  3567888  99877   444431


Q ss_pred             CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC----CCCee-----eecCCC----------------CeeeEEEEc
Q 001311          496 HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN----LGSRV-----DYEAPG----------------RWCTTMAYS  550 (1102)
Q Consensus       496 h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~----~~~~~-----~~~~~~----------------~~v~~~~~s  550 (1102)
                      - +.   +.+.+... ..+++.+.||.+.+.|+.+    .....     .+....                +.+..+...
T Consensus       165 ~-~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~  239 (368)
T 1mda_H          165 A-SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIP  239 (368)
T ss_dssp             S-SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECC
T ss_pred             C-Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECC
Confidence            1 11   11223332 3445666677777777765    11111     000000                111111111


Q ss_pred             cCCceeee------------ccccCceeEEEEcCCCCEEEEEeC---------CCeEEEEECCCcceEEEEcCCCCCCCc
Q 001311          551 ADGTRTYQ------------GFRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLLTSIDADGGLPAS  609 (1102)
Q Consensus       551 ~~~~~~~~------------~~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~v  609 (1102)
                      .....+..            +........+.+++++++++.+..         ++.+.++|+.+++.+..+....   ..
T Consensus       240 ~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~---~p  316 (368)
T 1mda_H          240 AAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH---DS  316 (368)
T ss_dssp             SSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE---EE
T ss_pred             CCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC---Cc
Confidence            10000000            000111122679999988887543         2356699999999888876543   37


Q ss_pred             CeEEEcCCCC-EEEEEE-CCCcEEEEEccCCccceeecc
Q 001311          610 PRIRFNKDGC-LLAVST-NDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       610 ~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                      .+++|+|||+ .+++.. .++.|.++|+.++ +.+..+.
T Consensus       317 ~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I~  354 (368)
T 1mda_H          317 DAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             CEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             ceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEEE
Confidence            8899999998 455555 5899999999998 5655554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.06  E-value=7.8e-09  Score=113.93  Aligned_cols=180  Identities=13%  Similarity=0.140  Sum_probs=109.5

Q ss_pred             EEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe
Q 001311          414 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF  493 (1102)
Q Consensus       414 l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~  493 (1102)
                      ..+..+| .|..++.++.|..|| .+++.+..   ...+...+.++...+++.   +..++.+  |..+|. +|+.+..+
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~---~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWF---FKSGEIIECRPSIGKDGT---IYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTSCEEES---SCGGGEEEECCEETTTTE---ECCSSCE--EEEECC-CGGGGGGS
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEE---EecCCCcccceEEecCCc---EEEecCc--EEEECC-CCcEEEEE
Confidence            3344455 455667788899999 77775432   333445567788877776   5555554  888995 77665544


Q ss_pred             ecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCC
Q 001311          494 EGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT  573 (1102)
Q Consensus       494 ~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~  573 (1102)
                      ...........+.   + ..++.++.++.|..+|.. +............+.++...                     ++
T Consensus        94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~---------------------~~  147 (330)
T 3hxj_A           94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVS---------------------ED  147 (330)
T ss_dssp             CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC---------------------TT
T ss_pred             ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEc---------------------CC
Confidence            4333222223332   2 467888888999999887 55544444333333333333                     33


Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       574 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +. +..++.++.|..||.. ++.+..+....  ..+.++.+.+++..++..   +.|..+| .++
T Consensus       148 g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g  204 (330)
T 3hxj_A          148 GT-IYVGSNDNYLYAINPD-GTEKWRFKTND--AITSAASIGKDGTIYFGS---DKVYAIN-PDG  204 (330)
T ss_dssp             SC-EEEECTTSEEEEECTT-SCEEEEEECSS--CCCSCCEECTTCCEEEES---SSEEEEC-TTS
T ss_pred             CE-EEEEcCCCEEEEECCC-CCEeEEEecCC--CceeeeEEcCCCEEEEEe---CEEEEEC-CCC
Confidence            33 6677788999999998 77776665433  246677777777755443   6777777 444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=3e-08  Score=108.61  Aligned_cols=193  Identities=11%  Similarity=0.105  Sum_probs=133.5

Q ss_pred             CeeEEEEecCCCeEEEEe-C------CeEEEEEcCCCceeeeecCCCC---CeeEEEEecCCCcEEEEEe----------
Q 001311          808 AVPCFALSKNDSYVMSAS-G------GKISLFNMMTFKTMATFMPPPP---AATFLAFHPQDNNIIAIGM----------  867 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s-d------g~I~iwd~~~~~~~~~~~~~~~---~i~~l~~sp~d~~~lasg~----------  867 (1102)
                      ....+.++|+| +++++. +      |.|.++|.++++.+.++.....   --..+-|+| +++.+++..          
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g  216 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDG  216 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccc
Confidence            34567888999 555543 4      6899999999999988863322   234578899 888888774          


Q ss_pred             ---------CCCcEEEEEeecceeeeeeccc--cccceeEEE--ecCCCEEEEEc------CCCcEEEEEcCCCccccee
Q 001311          868 ---------DDSSIQIYNVRVDEVKSKLKGH--SKRITGLAF--SHALNVLVSSG------ADSQLCVWSSDGWEKQKNR  928 (1102)
Q Consensus       868 ---------~dg~v~vwd~~~~~~~~~l~~h--~~~V~~l~~--s~d~~~l~s~s------~Dg~i~vwd~~~~~~~~~~  928 (1102)
                               .+.+|.+||+.+++.+.++..-  ......|.|  +|+++++.+++      .+++|.+|..+.++.....
T Consensus       217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence                     3689999999998888777542  123345555  99999888776      4568888777654433333


Q ss_pred             eeecCCCCC---C---------CCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC---CceEeeeeccCCC---------
Q 001311          929 FLQIPTGRT---P---------TAQSDTRVQFHQDQIHFLVV--HETQLAIFETT---KLECVKQWVPRES---------  982 (1102)
Q Consensus       929 ~~~~~~~~~---~---------~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~---~~~~~~~~~~~~h---------  982 (1102)
                      .+.+.....   .         .......+.+|+||++|.++  ..+.|.+||+.   +.+.+..+...+.         
T Consensus       297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G  376 (462)
T 2ece_A          297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG  376 (462)
T ss_dssp             EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred             EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence            322221100   0         01357899999999999996  57899999985   3456665554321         


Q ss_pred             ---CCCeeEEEEcCCCcEEEEEe
Q 001311          983 ---SAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus       983 ---~~~v~~l~~spd~~~l~s~s 1002 (1102)
                         ......+++||||++|+++.
T Consensus       377 ~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          377 HKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ccCCCCCCEEEEcCCCCEEEEEc
Confidence               11468899999999999988

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.05  E-value=8.6e-05  Score=87.98  Aligned_cols=505  Identities=7%  Similarity=-0.074  Sum_probs=264.6

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      .-..+.+|+|++.+..|+.+-..++.|..+++.......                   ++..-......+++.+.+..|.
T Consensus        35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY   95 (628)
T 4a0p_A           35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLY   95 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEE
T ss_pred             CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEE
Confidence            445789999999888777787788999999987543322                   1222224577899998666555


Q ss_pred             EE-ECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311          425 VA-YSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHEAPVYS  502 (1102)
Q Consensus       425 s~-~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd~~~~~~~~~~~~h~~~v~~  502 (1102)
                      .+ ...+.|.+.++++..... +  +...-.....|++.|.... ++++- +..+.|...++.... ...+-........
T Consensus        96 ~tD~~~~~I~v~~~dG~~~~~-l--~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~P~G  170 (628)
T 4a0p_A           96 WADTGTNRIEVSKLDGQHRQV-L--VWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSE-RTTLVPNVGRANG  170 (628)
T ss_dssp             EEETTTTEEEEEETTSTTCEE-E--ECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCS-CEEEECSCSSEEE
T ss_pred             EEECCCCEEEEEecCCCcEEE-E--EeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCc-eEEEECCCCCcce
Confidence            44 556889999987654221 1  2233456789999986664 33443 345678888865443 3333334456677


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      +++.+.. +.+.++-...+.|...|++.... ..+.....                     ....+++.. +..+++-..
T Consensus       171 lalD~~~-~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~---------------------~P~glav~~-~~ly~tD~~  226 (628)
T 4a0p_A          171 LTIDYAK-RRLYWTDLDTNLIESSNMLGLNR-EVIADDLP---------------------HPFGLTQYQ-DYIYWTDWS  226 (628)
T ss_dssp             EEEETTT-TEEEEEETTTTEEEEEETTSCSC-EEEEECCS---------------------CEEEEEEET-TEEEEEETT
T ss_pred             EEEcccc-CEEEEEECCCCEEEEEcCCCCce-EEeeccCC---------------------CceEEEEEC-CEEEEecCC
Confidence            8875322 23444445567888888865332 11111111                     112333332 233344445


Q ss_pred             CCeEEEEECCCcceEEEEcCCCCCCCcCeEEE-cCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCC
Q 001311          583 DFSIKFWDMDSVQLLTSIDADGGLPASPRIRF-NKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKP  661 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  661 (1102)
                      .+.|...|..+++....+.....  ....+.. ++..+.   +        .+     .+.. ..+.-..        . 
T Consensus       227 ~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~--------~n-----~C~~-~ng~C~~--------~-  278 (628)
T 4a0p_A          227 RRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G--------WN-----ECAS-SNGHCSH--------L-  278 (628)
T ss_dssp             TTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C--------CC-----TTTT-TGGGCSS--------E-
T ss_pred             CCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c--------ce-----Eecc-CCCCcch--------h-
Confidence            77888888777766555542211  2223322 211110   0        00     0000 0000000        0 


Q ss_pred             CcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccc
Q 001311          662 TISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATK  741 (1102)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~  741 (1102)
                      ++..                                  +.+.+... ..+|.    .+..                  ..
T Consensus       279 C~~~----------------------------------~~~~~~C~-C~~g~----~l~~------------------d~  301 (628)
T 4a0p_A          279 CLAV----------------------------------PVGGFVCG-CPAHY----SLNA------------------DN  301 (628)
T ss_dssp             EEEE----------------------------------TTTEEEEE-CSTTC----EECT------------------TS
T ss_pred             hhcC----------------------------------CCCCeeEE-cCCCc----Eecc------------------cC
Confidence            0000                                  00000000 00010    0000                  00


Q ss_pred             eEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeE
Q 001311          742 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYV  821 (1102)
Q Consensus       742 i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~l  821 (1102)
                      .+|.  .+ ...|+.+. ...|+-..+...                    ........+.   .-..+.+++|++.+..|
T Consensus       302 ~~C~--~~-~~~Ll~s~-~~~i~~i~l~~~--------------------~~~~~~l~~~---~~~~~~~ld~d~~~~~i  354 (628)
T 4a0p_A          302 RTCS--AP-TTFLLFSQ-KSAINRMVIDEQ--------------------QSPDIILPIH---SLRNVRAIDYDPLDKQL  354 (628)
T ss_dssp             SCEE--CC-SSEEEEEE-TTEEEEECCCTT--------------------CCCCEECCCT---TCSCEEEEEEETTTTEE
T ss_pred             CcCc--cc-cceeeeec-cceEEEEecccc--------------------cCceEEEEeh---hcCCceEEEEecCCCeE
Confidence            0010  01 12233222 223332222100                    0000000011   22447889999987777


Q ss_pred             EEEe--CCeEEEEEcCCCceeeeecC------CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee-cccccc
Q 001311          822 MSAS--GGKISLFNMMTFKTMATFMP------PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-KGHSKR  892 (1102)
Q Consensus       822 as~s--dg~I~iwd~~~~~~~~~~~~------~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l-~~h~~~  892 (1102)
                      ..+.  .+.|+.++.........+..      ....+..+|+....+++..+-+..+.|.+.++. |+....+ ......
T Consensus       355 y~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~~  433 (628)
T 4a0p_A          355 YWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQDR  433 (628)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTCC
T ss_pred             EEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCCc
Confidence            7776  57899888765433333332      234688999998445566666677899999875 4444443 333456


Q ss_pred             ceeEEEecC-CCEEEEEcCCC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEE
Q 001311          893 ITGLAFSHA-LNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFE  967 (1102)
Q Consensus       893 V~~l~~s~d-~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd  967 (1102)
                      ..+|++.|. |.++++-....  .|...++++...  ..+..   ...   .....+++++++..|..+  ..+.|..++
T Consensus       434 Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~--~~l~~---~~l---~~P~gla~D~~~~~LYw~D~~~~~I~~~~  505 (628)
T 4a0p_A          434 PRAVVVNPEKGYMYFTNLQERSPKIERAALDGTER--EVLFF---SGL---SKPIALALDSRLGKLFWADSDLRRIESSD  505 (628)
T ss_dssp             EEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSC--EEEEC---SSC---SCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCc--EEEEe---ccC---CCccEEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            789999994 54444433222  566666665322  11111   111   245889999988777775  457899999


Q ss_pred             cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEe
Q 001311          968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~ 1021 (1102)
                      ++... .+.+.. ........+++.. +.++++=...+.|...|..+|+....+
T Consensus       506 ~dG~~-r~~~~~-~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          506 LSGAN-RIVLED-SNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             TTSCS-CEEEEC-SSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             CCCCc-eEEEEc-CCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            86543 333321 2244577888754 455555556678888888877654444

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.05  E-value=3.7e-05  Score=91.07  Aligned_cols=198  Identities=7%  Similarity=-0.016  Sum_probs=120.7

Q ss_pred             CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      ..+.+++|++.+..|..+.  .+.|+.+++........+.........+++...++++.++-...+.|.+.++.... ..
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~  427 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RK  427 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CE
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EE
Confidence            3477899998766666665  68899999876444333443345678999997456666666667899999876443 33


Q ss_pred             ee-ccccccceeEEEecCCCEEEEEcC--CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001311          885 KL-KGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  959 (1102)
Q Consensus       885 ~l-~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~  959 (1102)
                      .+ ...-....+|++.|...+|..+..  ...|...++++...  ....   .+..   .....+++++++..|..+  .
T Consensus       428 ~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~--~~l~---~~~l---~~P~GlalD~~~~~LY~aD~~  499 (619)
T 3s94_A          428 ILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR--VVLV---NTSL---GWPNGLALDYDEGKIYWGDAK  499 (619)
T ss_dssp             EEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEE---CSSC---SCEEEEEEETTTTEEEEEETT
T ss_pred             EEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc--EEEE---eCCC---CCCeeeEEcccCCEEEEEECC
Confidence            33 223345688999997545544432  35677777765332  1111   1111   245789999987777765  4


Q ss_pred             CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311          960 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus       960 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
                      .+.|..+++..........  ........|++..+ .++++-...+.|...|..+|.
T Consensus       500 ~~~I~~~~~dG~~~~~~~~--~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          500 TDKIEVMNTDGTGRRVLVE--DKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             TTEEEEEESSSCCCEEEEE--CCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             CCEEEEEecCCCceEEEec--cCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence            5688888886543322221  11233456666543 333444445677777877773

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.95  E-value=3.1e-08  Score=109.05  Aligned_cols=218  Identities=12%  Similarity=0.083  Sum_probs=133.6

Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311          351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  430 (1102)
Q Consensus       351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  430 (1102)
                      +..+..+|.  +..|+.++.|..|| .+++.+..                   ...+...+.++...++|.+.+ ++.+ 
T Consensus        24 ~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~-   79 (330)
T 3hxj_A           24 SPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK-   79 (330)
T ss_dssp             CCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE-
T ss_pred             CceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc-
Confidence            344556665  66777889999999 88876542                   111233456777777776544 4444 


Q ss_pred             eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCC
Q 001311          431 IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKEN  510 (1102)
Q Consensus       431 ~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~  510 (1102)
                       |..+|. +++.+..   +...........+. ++   .+..++.++.|..+|.. |+.+..+..+...+.++..  ..+
T Consensus        80 -l~~~d~-~g~~~~~---~~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~~  147 (330)
T 3hxj_A           80 -VYAINP-DGTEKWR---FDTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SED  147 (330)
T ss_dssp             -EEEECC-CGGGGGG---SCC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CTT
T ss_pred             -EEEECC-CCcEEEE---EECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cCC
Confidence             888886 5543321   11122222333333 44   36777888999999988 8877777655555555543  334


Q ss_pred             ccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEE
Q 001311          511 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWD  590 (1102)
Q Consensus       511 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd  590 (1102)
                      + .++.++.++.|..+|.. +.....+......+.++...                     +++. +..++  +.|..||
T Consensus       148 g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d---------------------~~g~-l~v~t--~~l~~~d  201 (330)
T 3hxj_A          148 G-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIG---------------------KDGT-IYFGS--DKVYAIN  201 (330)
T ss_dssp             S-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEEC---------------------TTCC-EEEES--SSEEEEC
T ss_pred             C-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEc---------------------CCCE-EEEEe--CEEEEEC
Confidence            4 46778888999999987 55554444333333333333                     3333 44555  7899999


Q ss_pred             CCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEE
Q 001311          591 MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILA  634 (1102)
Q Consensus       591 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd  634 (1102)
                       .+++.........  ..+.++...++|. |.+++.++.|..++
T Consensus       202 -~~g~~~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~~gl~~~~  241 (330)
T 3hxj_A          202 -PDGTEKWNFYAGY--WTVTRPAISEDGT-IYVTSLDGHLYAIN  241 (330)
T ss_dssp             -TTSCEEEEECCSS--CCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred             -CCCcEEEEEccCC--cceeceEECCCCe-EEEEcCCCeEEEEC
Confidence             6777776665432  3577888888875 44466677777775

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.89  E-value=6.4e-10  Score=124.15  Aligned_cols=189  Identities=13%  Similarity=0.111  Sum_probs=108.3

Q ss_pred             CCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCC
Q 001311          859 DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTP  938 (1102)
Q Consensus       859 d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~  938 (1102)
                      ++..|++++.||.|+.||..+|+.+..+..  +.+.+..+..++..+++++.|+.|+.||.++++...........    
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~----   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE----   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHH----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc----
Confidence            466888999999999999999999888776  56666667778888888899999999999887643211110000    


Q ss_pred             CCCCC-cEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311          939 TAQSD-TRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus       939 ~~~~v-~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
                         .+ ....+..++ .+++ +.++.|+.||..+|+.+..+..  +.    ...++|++..+++++.|+.|+.||..+|+
T Consensus        82 ---~~~~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~--~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           82 ---LVQASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS--AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             ---HHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             ---ccccCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC--CC----cccccccCCEEEEEecCCEEEEEECCCCC
Confidence               00 011112344 4444 6789999999999998766542  22    24567788999999999999999999998


Q ss_pred             eEEEeCCCcccCCCCCCCcccceEEEecCC--CCCEEEEEecCCcEEEEeccCCCcccccC
Q 001311         1017 LRCRINPSAYLPAGVSSSNVHPLVIAAHPQ--EPNEFALGLSDGGVHVFEPLESEGKWGVP 1075 (1102)
Q Consensus      1017 ~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~--d~~~l~s~~~Dg~v~vW~~~~~~~~~~~~ 1075 (1102)
                      .+.++....+          .  ...+.++  -...+++++.||.|+.||..+++..|...
T Consensus       152 ~~W~~~~~~~----------~--~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          152 LRWNATYFDY----------A--ASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCCEEEEEEE----------C--CBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEEeEecccc----------c--CccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            8765541111          1  1122220  01567788999999999999999888764

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.88  E-value=8.2e-08  Score=109.10  Aligned_cols=237  Identities=6%  Similarity=0.017  Sum_probs=153.4

Q ss_pred             ccCCceEEEeecC-ceEEeeeccccccCCCCcccccccceeccCCCcccccc-ccCCCCCCCCeeEEEE-e-cCCCeEEE
Q 001311          748 TNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTN-DVTDSNPEEAVPCFAL-S-KNDSYVMS  823 (1102)
Q Consensus       748 s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~-~~~~~~~~~~i~~l~~-s-~d~~~las  823 (1102)
                      .+||+++.+...+ ..|.+.|+.                      +.+.... .+   .....+..+++ + |+++++.+
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~----------------------t~~~~~ii~i---p~g~~phg~~~~~~p~~~~v~~  152 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCD----------------------VMKCDAILEI---PNAKGIHGLRPQKWPRSNYVFC  152 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETT----------------------TTEEEEEEEC---SSCCSEEEEEECCSSBCSEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECC----------------------CceEeeEEeC---CCCCCCcceeeeecCCCcEEEE
Confidence            3488888876654 567776653                      2221110 11   12345778887 5 89999888


Q ss_pred             Ee-------------------CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCC--------------
Q 001311          824 AS-------------------GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDS--------------  870 (1102)
Q Consensus       824 ~s-------------------dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg--------------  870 (1102)
                      ++                   ++.+.+.|..+.+...++.-.. ....++++| +++++++.+.+.              
T Consensus       153 ~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~sp-dGk~~~vt~~~se~~~~i~~~~~~~~  230 (595)
T 1fwx_A          153 NGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADY-EGKWAFSTSYNSEKGMTLPEMTAAEM  230 (595)
T ss_dssp             EECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCCSE
T ss_pred             ecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECC-CCCEEEEEecCcccCcchhhcccccc
Confidence            83                   3579999999988888776322 457788999 888888887553              


Q ss_pred             ------------------------cEEEEEeec--cee-eeeeccccccceeEEEecCCCEEEEEc-CCCcEEEEEcCCC
Q 001311          871 ------------------------SIQIYNVRV--DEV-KSKLKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGW  922 (1102)
Q Consensus       871 ------------------------~v~vwd~~~--~~~-~~~l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~  922 (1102)
                                              .|.|.|..+  ++. +..+.. ....-++.++|||+++++++ .+.+|.++|+.+.
T Consensus       231 d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~  309 (595)
T 1fwx_A          231 DHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF  309 (595)
T ss_dssp             EEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred             ceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence                                    355566555  333 333322 22356799999999877665 6789999999964


Q ss_pred             ccc--------ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCC----------ceEeeeeccC--
Q 001311          923 EKQ--------KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTK----------LECVKQWVPR--  980 (1102)
Q Consensus       923 ~~~--------~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~----------~~~~~~~~~~--  980 (1102)
                      +..        .........|     .....++|+++| ++.+.  -+++|.+||+.+          .+.+..+..+  
T Consensus       310 ~~~~~~~l~~~~~v~~~v~vG-----~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq  383 (595)
T 1fwx_A          310 DAVFYENADPRSAVVAEPELG-----LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ  383 (595)
T ss_dssp             HHHHHSCCCGGGGEEECCBCC-----SCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred             ccccccccCcccceEEEcCCC-----CCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence            310        1112222323     356899999999 66553  789999999987          5566665533  


Q ss_pred             -CCCCCeeEEEEcCCCcEEEEEeC---CCe----------EEEEEcCCceeE
Q 001311          981 -ESSAPITHATFSCDSQLVYACFL---DAT----------VCVFSAANLKLR 1018 (1102)
Q Consensus       981 -~h~~~v~~l~~spd~~~l~s~s~---Dg~----------I~vwd~~~~~~~ 1018 (1102)
                       +|...-..+.++|||++|++++.   |+.          -.++|+..++..
T Consensus       384 pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~  435 (595)
T 1fwx_A          384 PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMV  435 (595)
T ss_dssp             EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCE
T ss_pred             cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEE
Confidence             22222233456899999998874   332          288999766543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.88  E-value=6e-10  Score=124.34  Aligned_cols=186  Identities=12%  Similarity=0.022  Sum_probs=110.9

Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ce
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-IT  894 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~  894 (1102)
                      ++..+++++ |+.|+.||..+++.+..+..  +.+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence            566777777 89999999999999988876  4565655666 6778888889999999999999887766544321 11


Q ss_pred             -eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCce
Q 001311          895 -GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLE  972 (1102)
Q Consensus       895 -~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~  972 (1102)
                       +..+. ++..|++++.|+.|+.||..+|+.....     ..+       ....++|++..+++ +.++.|+.||..+|+
T Consensus        85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~-----~~~-------~~~~~~p~~~~v~~~~~dg~v~a~d~~tG~  151 (369)
T 2hz6_A           85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTL-----SSA-------FADSLSPSTSLLYLGRTEYTITMYDTKTRE  151 (369)
T ss_dssp             TCSCC------CCCCEEEEEEEEECCC----------------------------------EEEEEEEEEEECCCSSSSS
T ss_pred             cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEe-----cCC-------CcccccccCCEEEEEecCCEEEEEECCCCC
Confidence             11121 3457778888999999999988753211     111       12345667777777 578999999999998


Q ss_pred             EeeeeccCCCCCCeeEEEEcCCC---cEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          973 CVKQWVPRESSAPITHATFSCDS---QLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       973 ~~~~~~~~~h~~~v~~l~~spd~---~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .+..+....    ....+++.+.   ..+++++.||.|+.||..+|+.+-+..
T Consensus       152 ~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~  200 (369)
T 2hz6_A          152 LRWNATYFD----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN  200 (369)
T ss_dssp             CCCEEEEEE----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred             EEEeEeccc----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence            765543211    2233344432   457778899999999999999877655

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.81  E-value=3.4e-07  Score=94.47  Aligned_cols=216  Identities=11%  Similarity=0.019  Sum_probs=147.2

Q ss_pred             ceeeeecCCCC--CeeEEEEecCCCcEEEEEeC--CCcEEEEEeecceeeeeeccccc-cceeEEEecCCCEE-EEEcCC
Q 001311          838 KTMATFMPPPP--AATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKSKLKGHSK-RITGLAFSHALNVL-VSSGAD  911 (1102)
Q Consensus       838 ~~~~~~~~~~~--~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~~l~~h~~-~V~~l~~s~d~~~l-~s~s~D  911 (1102)
                      +.+.++. |..  ....++|++ ++.++++.+.  ++.|+++|+.+++.+..+.-... ....+++.  ++.| ++.-.+
T Consensus        10 ~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~   85 (266)
T 2iwa_A           10 EVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTC
T ss_pred             eEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecC
Confidence            4455554 443  357999999 6765555543  57999999999998887642111 12345554  4444 455568


Q ss_pred             CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCC---Cee
Q 001311          912 SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PIT  987 (1102)
Q Consensus       912 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~  987 (1102)
                      +.+.++|..+.+......    .+ .+     ....+++||+.++++ .++.|.++|..+.+.+..+....+..   .++
T Consensus        86 ~~v~viD~~t~~v~~~i~----~g-~~-----~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKNFT----HQ-MK-----DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             SEEEEEETTTTEEEEEEE----CC-SS-----SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CEEEEEECCCCcEEEEEE----CC-CC-----CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            899999999876543221    11 11     234577788888875 67799999999999888877533222   467


Q ss_pred             EEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccC----CCCCCCcccceEEEecCCCCCEEEEEecCCcEEEE
Q 001311          988 HATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLP----AGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1063 (1102)
Q Consensus       988 ~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~----~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW 1063 (1102)
                      .+.|. ||+.++....++.|.+-|..+++.+.++......+    .++ .....+-.|+|+|+...+++++...+.|++-
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~-~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i  233 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGF-RDIDVLNGIAWDQENKRIFVTGKLWPKLFEI  233 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTC-TTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccc-cccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence            88888 78666665568899999999999999998432111    110 1113345899999656678888899999999


Q ss_pred             eccCCC
Q 001311         1064 EPLESE 1069 (1102)
Q Consensus      1064 ~~~~~~ 1069 (1102)
                      ++.+.+
T Consensus       234 ~l~~~~  239 (266)
T 2iwa_A          234 KLHLVR  239 (266)
T ss_dssp             EEEECC
T ss_pred             EEeccc
Confidence            997654

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.80  E-value=1.5e-06  Score=104.70  Aligned_cols=168  Identities=14%  Similarity=0.136  Sum_probs=112.5

Q ss_pred             eEEEEecCCCcEEEEEeCCCc-------------------EEEEEeecceeeeeecc--cc-------ccceeEEEecCC
Q 001311          851 TFLAFHPQDNNIIAIGMDDSS-------------------IQIYNVRVDEVKSKLKG--HS-------KRITGLAFSHAL  902 (1102)
Q Consensus       851 ~~l~~sp~d~~~lasg~~dg~-------------------v~vwd~~~~~~~~~l~~--h~-------~~V~~l~~s~d~  902 (1102)
                      ..+++++ +..+++.++.++.                   |..+|..+|+.+..++.  |.       .+.....+..+|
T Consensus       233 ~~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G  311 (668)
T 1kv9_A          233 DSMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDG  311 (668)
T ss_dssp             SCEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred             cceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence            3578888 6778888877763                   99999999998877653  32       222222333467


Q ss_pred             C---EEEEEcCCCcEEEEEcCCCcccceeeeec---------CCCC-------C-C-----------CCCCCcEEEEccC
Q 001311          903 N---VLVSSGADSQLCVWSSDGWEKQKNRFLQI---------PTGR-------T-P-----------TAQSDTRVQFHQD  951 (1102)
Q Consensus       903 ~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~---------~~~~-------~-~-----------~~~~v~~~~~spd  951 (1102)
                      +   .|+.++.+|.+.++|..+++.........         ..+.       . .           ....-..++++|+
T Consensus       312 ~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~  391 (668)
T 1kv9_A          312 KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPG  391 (668)
T ss_dssp             EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETT
T ss_pred             cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCC
Confidence            5   68899999999999999988652111000         0000       0 0           0000123788888


Q ss_pred             CcEEEEE-------------------------------------eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC
Q 001311          952 QIHFLVV-------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATFSCD  994 (1102)
Q Consensus       952 g~~l~~~-------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd  994 (1102)
                      ...+.+.                                     .++.|..||+.+++.+-....   ...+....+...
T Consensus       392 ~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~---~~~~~~~~~~t~  468 (668)
T 1kv9_A          392 TGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY---PTHWNGGTLSTA  468 (668)
T ss_dssp             TTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE---SSSCCCCEEEET
T ss_pred             CCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC---CCCCcCceeEeC
Confidence            7766541                                     127799999999998766543   223333445557


Q ss_pred             CcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          995 SQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       995 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +.++++++.||.+++||..+|+.+.++.
T Consensus       469 gg~vf~g~~dg~l~a~d~~tG~~l~~~~  496 (668)
T 1kv9_A          469 GNLVFQGTAAGQMHAYSADKGEALWQFE  496 (668)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEECCcccchhhhhhcChhheEec
Confidence            8889999999999999999999999887

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.79  E-value=0.0012  Score=83.72  Aligned_cols=224  Identities=8%  Similarity=0.029  Sum_probs=125.6

Q ss_pred             eEEEEeCCeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEeCC----------------------------
Q 001311          820 YVMSASGGKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD----------------------------  869 (1102)
Q Consensus       820 ~las~sdg~I~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----------------------------  869 (1102)
                      -++..+++.++|..+.+.+.  ++++. -...+..++++| ..+.++++..+                            
T Consensus       708 g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  785 (1158)
T 3ei3_A          708 SLALANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSS  785 (1158)
T ss_dssp             EEEEECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECC
T ss_pred             cEEEEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccc
Confidence            45555566788887754332  22232 234678888888 55554443311                            


Q ss_pred             ---------------------CcEEEEEeecceeeeeecc-ccccceeEE---EecC-CCEEEEEc----------CCCc
Q 001311          870 ---------------------SSIQIYNVRVDEVKSKLKG-HSKRITGLA---FSHA-LNVLVSSG----------ADSQ  913 (1102)
Q Consensus       870 ---------------------g~v~vwd~~~~~~~~~l~~-h~~~V~~l~---~s~d-~~~l~s~s----------~Dg~  913 (1102)
                                           +.|++.|-.+++.+..+.- ....+.+++   |..+ ..+|+.|+          ..|.
T Consensus       786 ~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr  865 (1158)
T 3ei3_A          786 SKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR  865 (1158)
T ss_dssp             CCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred             cccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence                                 2355666555555444321 223345544   3333 46888776          2477


Q ss_pred             EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC
Q 001311          914 LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSC  993 (1102)
Q Consensus       914 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp  993 (1102)
                      |.++++..++..... .....      +.+++++-- +| +|+++..+.|++|++...+.++ .....+. .|..+...-
T Consensus       866 i~vf~v~~~kL~lv~-~~~v~------g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~-~~~~~~~-~i~~~~l~~  934 (1158)
T 3ei3_A          866 IVVFQYSDGKLQTVA-EKEVK------GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELR-TECNHYN-NIMALYLKT  934 (1158)
T ss_dssp             EEEEEEETTEEEEEE-EEEES------SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEE-EEEEECC-CSCEEEEEE
T ss_pred             EEEEEEECCEEEEEE-EEEcC------CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEE-EEeeccc-cEEEEEEec
Confidence            999999743321111 11111      355655432 34 6777778999999998665333 1111111 233333333


Q ss_pred             CCcEEEEEeCCCeEEEEE--cCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311          994 DSQLVYACFLDATVCVFS--AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus       994 d~~~l~s~s~Dg~I~vwd--~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      .+.+++.|..-..|.++.  ...+++...-+  .+.+       .+++++.|.-  ...++.+..+|.|.+.....
T Consensus       935 ~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--D~~~-------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          935 KGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--DFNP-------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             ETTEEEEEESSBCEEEEEEETTTTEEEEEEE--CCSC-------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred             cCCEEEEEEhhheEEEEEEEcCCCeEEEEEe--eccc-------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence            577888888777776654  44444443222  2222       4455888874  35888899999999998765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.77  E-value=4.7e-06  Score=97.83  Aligned_cols=167  Identities=13%  Similarity=0.120  Sum_probs=104.3

Q ss_pred             EEEEecCCCcEEEEEeCC----------------CcEEEEEeecceeeeeecccccc------cee---EEEe-cCC---
Q 001311          852 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKGHSKR------ITG---LAFS-HAL---  902 (1102)
Q Consensus       852 ~l~~sp~d~~~lasg~~d----------------g~v~vwd~~~~~~~~~l~~h~~~------V~~---l~~s-~d~---  902 (1102)
                      .+++.+ +..++..+..+                +.|.-+|..+|+.+-.++.....      +..   +... .+|   
T Consensus       245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKAR  323 (599)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEE
T ss_pred             ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEE
Confidence            456777 56677767655                37999999999988666432111      111   1222 467   


Q ss_pred             CEEEEEcCCCcEEEEEcCCCcccceeeeec----------CCCCC---------------------CCCCCCcEEEEccC
Q 001311          903 NVLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT---------------------PTAQSDTRVQFHQD  951 (1102)
Q Consensus       903 ~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~~~---------------------~~~~~v~~~~~spd  951 (1102)
                      +.++.++.+|.+.++|.++++..-......          ..+..                     .....-..++++|+
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            567889999999999999987643322110          00000                     00001135677777


Q ss_pred             CcEEEEE----------------------------------------eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEE
Q 001311          952 QIHFLVV----------------------------------------HETQLAIFETTKLECVKQWVPRESSAPITHATF  991 (1102)
Q Consensus       952 g~~l~~~----------------------------------------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~  991 (1102)
                      ..++++.                                        ..+.|..||+.+++.+-.....   .++..-.+
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~---~~~~~g~~  480 (599)
T 1w6s_A          404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTM  480 (599)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCE
T ss_pred             CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC---CCccCcce
Confidence            6665542                                        2357888899998877665421   11211112


Q ss_pred             cCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          992 SCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       992 spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .-.+.+++.++.||.++.||..+|+.+-+++
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            3356778889999999999999999998887

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.74  E-value=1.8e-06  Score=89.15  Aligned_cols=200  Identities=10%  Similarity=0.048  Sum_probs=137.9

Q ss_pred             CeeEEEEecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          808 AVPCFALSKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      ....++|++|+.+.++.+   ++.|+++|+.+++.+..+..... ....+++.  ++++.++.-.++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            457899999876555543   47899999999999888653222 23355665  3456666667899999999999988


Q ss_pred             eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311          884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  962 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~  962 (1102)
                      .++..-..  ....+++||+.|+.+..+++|.++|.++.+.......... +..  ...+..+.|. +|+..+.. .++.
T Consensus       100 ~~i~~g~~--~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          100 KNFTHQMK--DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEECCSS--SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCCC--CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence            88853211  2344667888777777788999999988665433222211 100  0124567777 77555544 5789


Q ss_pred             EEEEEcCCceEeeeeccCC-----------CCCCeeEEEEcCCCcEE-EEEeCCCeEEEEEcCCc
Q 001311          963 LAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLV-YACFLDATVCVFSAANL 1015 (1102)
Q Consensus       963 i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~spd~~~l-~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      |.+.|..+++.+..+...+           -......++|+|+++.| +++...+.+++.++...
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            9999999999988876421           01356899999998755 55557788988887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.73  E-value=7.7e-06  Score=86.46  Aligned_cols=202  Identities=10%  Similarity=-0.017  Sum_probs=132.2

Q ss_pred             CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311          808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      .+..+++++++..|..+.  ++.|..++..+......+.........+++++++++++++-..++.|.++++........
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            467899999877777665  689999999765544334333356899999993455555555678999999864322222


Q ss_pred             eccccccceeEEEecCCCEEEEEcC---CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001311          886 LKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  960 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d  960 (1102)
                      ..........++++|++..|..+..   .+.|.+++++....   ..+....     ......+++++++.+|.++  ..
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~---~~~~~~~-----~~~P~gia~d~~~~~lyv~d~~~  188 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR---RILAQDN-----LGLPNGLTFDAFSSQLCWVDAGT  188 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC---EEEECTT-----CSCEEEEEEETTTTEEEEEETTT
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc---EEEEECC-----CCCCcEEEEcCCCCEEEEEECCC
Confidence            2222234678999997666554443   36788888875321   1111111     1245789999988777664  56


Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeC
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +.|.++|..+........  + ......+++.  +..|+.+. ..+.|.++|..+++.+.++.
T Consensus       189 ~~I~~~~~~g~~~~~~~~--~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~  246 (267)
T 1npe_A          189 HRAECLNPAQPGRRKVLE--G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (267)
T ss_dssp             TEEEEEETTEEEEEEEEE--C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CEEEEEecCCCceEEEec--C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence            789999998655433332  1 2345677764  44554444 56899999999999998886

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.72  E-value=4e-07  Score=92.28  Aligned_cols=201  Identities=12%  Similarity=0.076  Sum_probs=135.4

Q ss_pred             ceeeeecCCCCC--eeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCC-CEEEEEcCCCcE
Q 001311          838 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL-NVLVSSGADSQL  914 (1102)
Q Consensus       838 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~-~~l~s~s~Dg~i  914 (1102)
                      +.+.++. |...  ...+.|+  ++.++.+.+.+|.|+++|+.+++.+..+  -..........+++ +..+..-.++.+
T Consensus        44 ~Vv~~~p-hd~~~ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREYP-HATNAFTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEEE-CCTTCCEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEE
T ss_pred             EEEEEEc-CCCccccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEE
Confidence            3445553 4443  4788887  4788888889999999999999988877  22334442233344 444455578899


Q ss_pred             EEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCCC---CeeEEE
Q 001311          915 CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESSA---PITHAT  990 (1102)
Q Consensus       915 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~~---~v~~l~  990 (1102)
                      .+||.++.+.......  . +        ....+++|++.|+++ .++.|.++|..+.+.+..+....+..   .++.+.
T Consensus       119 ~V~D~~Tl~~~~ti~~--~-~--------eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe  187 (268)
T 3nok_A          119 FTWSGMPPQRERTTRY--S-G--------EGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELE  187 (268)
T ss_dssp             EEEETTTTEEEEEEEC--S-S--------CCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred             EEEECCcCcEEEEEeC--C-C--------ceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccE
Confidence            9999999776443322  1 1        123444778888886 58899999999999988877544333   446677


Q ss_pred             EcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCC---CCCCcccceEEEecCCCCCEEEEEe
Q 001311          991 FSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG---VSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus       991 ~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~g---h~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
                      |. +|+.++..-.+..|.+.|..+|+.+..+......+..   .....-.+-+|+|+|+...+++||-
T Consensus       188 ~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          188 CA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             EE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             Ee-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            77 7876665556889999999999999999865322110   0011122348999997677777773

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.71  E-value=6.8e-07  Score=90.75  Aligned_cols=202  Identities=11%  Similarity=0.111  Sum_probs=135.2

Q ss_pred             ceeeeecCCCCC--eeEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEE-cCCC
Q 001311          838 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSS-GADS  912 (1102)
Q Consensus       838 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~-s~Dg  912 (1102)
                      +.++++. |...  ...+.|+  ++.++.+.+.+|  .|+++|+.+++.+..+.-. .........++++.|... -.++
T Consensus        32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence            3455553 5544  4788998  467777777776  9999999999988887543 334443334455555544 4588


Q ss_pred             cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCC---CCeeE
Q 001311          913 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH  988 (1102)
Q Consensus       913 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~  988 (1102)
                      .+.+||.++.+........   +        ....+++|++.|+++ .++.|.++|..+.+.+..+......   ..++.
T Consensus       108 ~v~v~D~~t~~~~~ti~~~---~--------eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNE  176 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYD---G--------EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNE  176 (262)
T ss_dssp             EEEEEETTTCCEEEEEECS---S--------CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEE
T ss_pred             EEEEEECccCcEEEEEECC---C--------CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccce
Confidence            9999999987754332221   1        224455788888775 4678999999999998887653322   33456


Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCC--CCCCcccceEEEecCCCCCEEEEEe
Q 001311          989 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG--VSSSNVHPLVIAAHPQEPNEFALGL 1055 (1102)
Q Consensus       989 l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~g--h~~~~v~~~~v~f~p~d~~~l~s~~ 1055 (1102)
                      +.|. +|+..+..-.+..|.+.|..+|+.+..+......+..  .....-.+-+|+|+|+...+++||-
T Consensus       177 Le~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          177 LEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             eEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            7776 7876666657889999999999999999865433321  0011122348999996656666663

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.69  E-value=3.9e-06  Score=101.10  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc-eeEEEecCCC-E
Q 001311          827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V  904 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~  904 (1102)
                      |.|..||+.+++.+.....+. ......+.. .+.++++|+.||.|++||..+++.+..+....... .-+.+..+|+ +
T Consensus       438 g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~y  515 (668)
T 1kv9_A          438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (668)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEE
Confidence            789999999999887765332 233334444 56788889999999999999999988876543322 2355566776 4


Q ss_pred             EEEEc
Q 001311          905 LVSSG  909 (1102)
Q Consensus       905 l~s~s  909 (1102)
                      ++.++
T Consensus       516 va~~~  520 (668)
T 1kv9_A          516 VAIMA  520 (668)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            44443

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.68  E-value=1e-05  Score=95.30  Aligned_cols=167  Identities=13%  Similarity=0.101  Sum_probs=105.2

Q ss_pred             EEEEecCCCcEEEEEeCC----------------CcEEEEEeecceeeeeecc--ccc----cceeE---EEecCCC---
Q 001311          852 FLAFHPQDNNIIAIGMDD----------------SSIQIYNVRVDEVKSKLKG--HSK----RITGL---AFSHALN---  903 (1102)
Q Consensus       852 ~l~~sp~d~~~lasg~~d----------------g~v~vwd~~~~~~~~~l~~--h~~----~V~~l---~~s~d~~---  903 (1102)
                      .+++.+ +...+..+..+                +.|..+|..+|+.+..++.  |..    .+...   ....+|+   
T Consensus       239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP  317 (571)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEE
T ss_pred             eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEE
Confidence            466777 45566555532                3599999999988776642  211    12222   2224674   


Q ss_pred             EEEEEcCCCcEEEEEcCCCcccceeeeec----------CCCCC------------------C---CCCCCcEEEEccCC
Q 001311          904 VLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTGRT------------------P---TAQSDTRVQFHQDQ  952 (1102)
Q Consensus       904 ~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~~~------------------~---~~~~v~~~~~spdg  952 (1102)
                      .++.++.+|.+.++|..+++..-......          ..+..                  +   ....-..++|+|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            67788999999999999887643221110          00000                  0   00001356888887


Q ss_pred             cEEEEE-e-------------------------------------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCC
Q 001311          953 IHFLVV-H-------------------------------------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCD  994 (1102)
Q Consensus       953 ~~l~~~-~-------------------------------------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd  994 (1102)
                      .++.+. .                                     ++.|..||..+++.+-.+...   ..+.+..+...
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---~~~~~~~~~t~  474 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---FAAWGGTLYTK  474 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEET
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---CCccceeEEEC
Confidence            777663 2                                     368999999999887665432   22222233335


Q ss_pred             CcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          995 SQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       995 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +.+++.++.||.|++||..+|+.+.++.
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            6677779999999999999999999887

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.66  E-value=0.0031  Score=77.64  Aligned_cols=534  Identities=12%  Similarity=0.069  Sum_probs=274.1

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      ...|.++....+|.  |-.|+.+| +..+|..+.+...                   ........|.++.. .+| .|-.
T Consensus        62 ~~~i~~i~~d~~g~--lWigT~~G-l~~yd~~~~~f~~-------------------~~~~~~~~i~~i~~-~~g-~lWi  117 (758)
T 3ott_A           62 NTRIYCGVIIDNTY--LYMGTDNG-ILVYNYRADRYEQ-------------------PETDFPTDVRTMAL-QGD-TLWL  117 (758)
T ss_dssp             SSCEEEEEEETTTE--EEEEETTE-EEEEETTTTEECC-------------------CSCCCCSCEEEEEE-ETT-EEEE
T ss_pred             CceEEEEEEcCCCc--EEEEeCCC-eEEEeCCCCEEEC-------------------cccCCCceEEEEEe-cCC-cEEE
Confidence            45789998888886  44555544 7889987753211                   00111235777765 355 4555


Q ss_pred             EECCCeEEEEEccCCceeeeEEEe-e-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ecC----CC
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLEI-D-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGH----EA  498 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~l-~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~h----~~  498 (1102)
                      ++.+ -+..+|..+++... .... . -....|.++....+|.  +.+ |..+ -|..+|..+++..... ...    ..
T Consensus       118 gt~~-Gl~~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~--lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~  191 (758)
T 3ott_A          118 GALN-GLYTYQLQSRKLTS-FDTRRNGLPNNTIYSIIRTKDNQ--IYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNL  191 (758)
T ss_dssp             EETT-EEEEEETTTCCEEE-ECHHHHCCSCSCEEEEEECTTCC--EEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSC
T ss_pred             EcCC-cceeEeCCCCeEEE-eccCCCCcCCCeEEEEEEcCCCC--EEE-EeCC-CHhhCccCCCceEEecCCCccccccc
Confidence            6665 57888987755321 1000 0 1134688888888887  333 4444 4778887776643221 111    12


Q ss_pred             CeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEE
Q 001311          499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL  578 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~  578 (1102)
                      .|.++..  +.++..|..|+. +-+..+|..+.... .+.       .             .....+.++....++...+
T Consensus       192 ~i~~i~~--d~~~~~lWigt~-~Gl~~~~~~~~~~~-~~~-------~-------------l~~~~i~~i~~d~~g~lWi  247 (758)
T 3ott_A          192 FVNSLLE--DTTRQCVWIGTE-GYLFQYFPSTGQIK-QTE-------A-------------FHNNSIKSLALDGNGDLLA  247 (758)
T ss_dssp             CEEEEEE--ETTTTEEEEEEE-EEEEEEETTTTEEE-EEE-------E-------------EEEEEEEEEEECTTCCEEE
T ss_pred             eeEEEEE--ECCCCEEEEEEC-CCCeEEcCCCCeEE-ecc-------C-------------CCCCeEEEEEEcCCCCEEE
Confidence            3676653  444444555554 45777776543211 110       0             0112355566666665444


Q ss_pred             EEeCCCeEEEEECCCcceEEEEcCCC-----CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccc
Q 001311          579 AAGDDFSIKFWDMDSVQLLTSIDADG-----GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDAS  653 (1102)
Q Consensus       579 ~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  653 (1102)
                       |+. +-+.+++..+++.........     ....|.++....+|.+.+ |+..| +.++... .  ....+.       
T Consensus       248 -gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G-l~~~~~~-~--~~~~~~-------  313 (758)
T 3ott_A          248 -GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG-ISLSRYN-S--ALQFIP-------  313 (758)
T ss_dssp             -EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS-EEEECCC-C---CEEEE-------
T ss_pred             -EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc-ccccccC-C--ceeEEe-------
Confidence             444 458888887665432221110     112466777777776555 44445 4443211 1  111000       


Q ss_pred             ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccC
Q 001311          654 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  733 (1102)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~  733 (1102)
                                                                                       ....           
T Consensus       314 -----------------------------------------------------------------~~~~-----------  317 (758)
T 3ott_A          314 -----------------------------------------------------------------ISQI-----------  317 (758)
T ss_dssp             -----------------------------------------------------------------HHHH-----------
T ss_pred             -----------------------------------------------------------------cccC-----------
Confidence                                                                             0000           


Q ss_pred             CCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEE
Q 001311          734 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  813 (1102)
Q Consensus       734 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~  813 (1102)
                      ........|.++....+|...+ ++.+|. ..++.......         ....+.....       ...-....|.++.
T Consensus       318 ~~~~~~~~v~~i~~D~~g~lWi-Gt~~Gl-~~~~~~~~~~~---------~~~~~~~~~~-------~~~l~~~~v~~i~  379 (758)
T 3ott_A          318 TGTGDGNQFYSLFRDSKGFYWF-GGANGL-IRFTDPAGERH---------DAIWYRMGDK-------TYPLSHNRIRHIY  379 (758)
T ss_dssp             SCSCCCCBEEEEEECTTCCEEE-EETTEE-EEESCTTSSCC---------CCEEECTTCS-------SSCCSCSCEEEEE
T ss_pred             CCCCCCceEEEEEEcCCCCEEE-eeCCcc-eeecccccccc---------eeEEeccCCc-------CCCCCCCceEEEE
Confidence            0000224577787788887444 445553 33432110000         0000100000       0000235688888


Q ss_pred             EecCCCeEEEEeCCeEEEEEcCCCceeeee--cC----CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc------e
Q 001311          814 LSKNDSYVMSASGGKISLFNMMTFKTMATF--MP----PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD------E  881 (1102)
Q Consensus       814 ~s~d~~~las~sdg~I~iwd~~~~~~~~~~--~~----~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~------~  881 (1102)
                      -..+|++-+.. ++.|..+|..+++...-.  ..    ....|.++.... +++ |..|+..+-|.++|..+.      .
T Consensus       380 ~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~  456 (758)
T 3ott_A          380 EDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQ  456 (758)
T ss_dssp             ECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHCCSSE
T ss_pred             ECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEccccccccCCcc
Confidence            88888765543 678999998876543221  11    123577887766 554 455776667888886531      1


Q ss_pred             ee--eeec---c-ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEE
Q 001311          882 VK--SKLK---G-HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF  955 (1102)
Q Consensus       882 ~~--~~l~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  955 (1102)
                      ..  ..+.   + ....|.+|...++|.+-+.++..+-|..+|..+++...     ...........+.++....+|.+.
T Consensus       457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~-----~~~~~~~~~~~~~~i~~d~~g~lW  531 (758)
T 3ott_A          457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK-----LFADELTGEKSPNYLLCDEDGLLW  531 (758)
T ss_dssp             EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE-----ECTTTSCGGGCEEEEEECTTSCEE
T ss_pred             eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE-----ecCCCcCCCcccceEEECCCCCEE
Confidence            11  1111   1 12358888888888877644444458889987654321     111111111356778888888877


Q ss_pred             EEEeCCeEEEEEcCCceEeeeeccCC-CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCC
Q 001311          956 LVVHETQLAIFETTKLECVKQWVPRE-SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1034 (1102)
Q Consensus       956 ~~~~d~~i~iwd~~~~~~~~~~~~~~-h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1034 (1102)
                      +.. .+.+..|+..+++.... ...+ ....|.++... +|. |..++.+| |..||..+.+... +.    ++..    
T Consensus       532 igt-~~Gl~~~~~~~~~~~~~-~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l~~~~~~~~~~~~-~~----~~~~----  597 (758)
T 3ott_A          532 VGF-HGGVMRINPKDESQQSI-SFGSFSNNEILSMTCV-KNS-IWVSTTNG-LWIIDRKTMDARQ-QN----MTNK----  597 (758)
T ss_dssp             EEE-TTEEEEECC--CCCCBC-CCCC---CCEEEEEEE-TTE-EEEEESSC-EEEEETTTCCEEE-C------CCC----
T ss_pred             EEe-cCceEEEecCCCceEEe-cccCCCccceEEEEEC-CCC-EEEECCCC-eEEEcCCCceeEE-ec----CCCC----
Confidence            655 45688888876654321 1111 14568888764 565 45455555 7778988776542 21    2211    


Q ss_pred             cccceEEEecCCCCCEEEEEecCCcEEEEeccC
Q 001311         1035 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLE 1067 (1102)
Q Consensus      1035 ~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~ 1067 (1102)
                      ...  ...+...+| .|..|+.+| +..++...
T Consensus       598 ~~~--~~~~~~~~G-~l~fG~~~G-l~~f~p~~  626 (758)
T 3ott_A          598 RFT--SLLFDPKED-CVYLGGADG-FGISHSNL  626 (758)
T ss_dssp             CCS--EEEEETTTT-EEEEECBSE-EEEEEC--
T ss_pred             cee--eeEEECCCC-cEEEecCCc-eEEEChhh
Confidence            122  344443344 666677676 45566654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.63  E-value=2.3e-05  Score=92.31  Aligned_cols=82  Identities=10%  Similarity=0.077  Sum_probs=53.3

Q ss_pred             CCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEE
Q 001311          869 DSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF  948 (1102)
Q Consensus       869 dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  948 (1102)
                      +|.|+.||..+++.+.++... ..+.+..+...+..++.++.|+.|+.||.++++..-..  ....+.     .-..+.+
T Consensus       443 ~g~l~a~D~~tG~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~--~~~~~~-----~~~p~~~  514 (571)
T 2ad6_A          443 MGQIRAFDLTTGKAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF--KMPSGG-----IGSPMTY  514 (571)
T ss_dssp             CEEEEEECTTTCCEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE--ECSSCC-----CSCCEEE
T ss_pred             CCeEEEEECCCCCEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE--eCCCCc-----EeeeEEE
Confidence            578999999999887776532 23334334445667788999999999999998764322  222111     1133456


Q ss_pred             ccCCcEEEEE
Q 001311          949 HQDQIHFLVV  958 (1102)
Q Consensus       949 spdg~~l~~~  958 (1102)
                      ..+|+.++..
T Consensus       515 ~~~G~~yv~~  524 (571)
T 2ad6_A          515 SFKGKQYIGS  524 (571)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCEEEEEE
Confidence            6788866664

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.61  E-value=2.5e-06  Score=86.57  Aligned_cols=184  Identities=10%  Similarity=0.090  Sum_probs=126.0

Q ss_pred             eeEEEEecCCCeEEEEe-CC--eEEEEEcCCCceeeeecCCCCCeeE--EEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          809 VPCFALSKNDSYVMSAS-GG--KISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s-dg--~I~iwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      ...+.|+ ++.++.+.+ +|  .|+++|+++++.+..+.... ....  +++.  ++++.+..-.++.+.+||..+.+.+
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence            4788998 666555555 55  89999999999988876433 3433  4444  4555555567899999999999999


Q ss_pred             eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311          884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  962 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~  962 (1102)
                      .++....   ....+++|++.|+.+..+++|.++|.++.+......... .+..  ...+..+.|. +|+..+.. .++.
T Consensus       121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~--~~~lNELe~~-~G~lyan~w~~~~  193 (262)
T 3nol_A          121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEE--LPELNELEWV-DGEIFANVWQTNK  193 (262)
T ss_dssp             EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCcc--ccccceeEEE-CCEEEEEEccCCe
Confidence            8887432   223444678777776667889999999876544322211 1110  0122346665 77655555 6789


Q ss_pred             EEEEEcCCceEeeeeccCCC----------CCCeeEEEEcCCCcEEEEEeC
Q 001311          963 LAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFL 1003 (1102)
Q Consensus       963 i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~spd~~~l~s~s~ 1003 (1102)
                      |.+.|.++++.+..+...+-          ..-.+.|||+|+++.|+..+.
T Consensus       194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            99999999999888765311          235689999999887776663

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.60  E-value=1.9e-05  Score=83.40  Aligned_cols=228  Identities=13%  Similarity=0.080  Sum_probs=141.4

Q ss_pred             CeEEEEeCCeEEEEEcCCCcee-----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc
Q 001311          819 SYVMSASGGKISLFNMMTFKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  893 (1102)
Q Consensus       819 ~~las~sdg~I~iwd~~~~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V  893 (1102)
                      .+|..+..+.|+.+++......     ..+......+..++|+++++.++++-..++.|.+++.........+.......
T Consensus         2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p   81 (267)
T 1npe_A            2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (267)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCc
Confidence            4566666568888888754321     11221224578999999445555555567899999987654333333223457


Q ss_pred             eeEEEecCCCEE-EEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--e--CCeEEEEEc
Q 001311          894 TGLAFSHALNVL-VSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H--ETQLAIFET  968 (1102)
Q Consensus       894 ~~l~~s~d~~~l-~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~--d~~i~iwd~  968 (1102)
                      .+|++++++..| ++-...+.|.++++++...  ....  ..+.    .....++++|++..|..+  .  .+.|..++.
T Consensus        82 ~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--~~~~--~~~~----~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~  153 (267)
T 1npe_A           82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR--RVLF--DTGL----VNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (267)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE--CSSC----SSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             cEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--EEEE--ECCC----CCccEEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence            889999976554 4555677899999876332  1111  1111    245889999976655553  2  368888887


Q ss_pred             CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311          969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus       969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
                      .... ...+.. ........+++++++++|+.+. ..+.|.++|.+.......+.      ..     ..|..++..  +
T Consensus       154 dg~~-~~~~~~-~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~------~~-----~~P~gi~~d--~  218 (267)
T 1npe_A          154 DGTN-RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE------GL-----QYPFAVTSY--G  218 (267)
T ss_dssp             TSCC-CEEEEC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE------CC-----CSEEEEEEE--T
T ss_pred             CCCC-cEEEEE-CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec------CC-----CCceEEEEe--C
Confidence            6432 222211 2235689999999877665444 56899999998654433322      11     234466654  3


Q ss_pred             CCEEEEEecCCcEEEEeccCCC
Q 001311         1048 PNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1048 ~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +.++++....+.|.++|..+++
T Consensus       219 ~~lyva~~~~~~v~~~d~~~g~  240 (267)
T 1npe_A          219 KNLYYTDWKTNSVIAMDLAISK  240 (267)
T ss_dssp             TEEEEEETTTTEEEEEETTTTE
T ss_pred             CEEEEEECCCCeEEEEeCCCCC
Confidence            5566666667899999998877

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.60  E-value=5.1e-05  Score=89.31  Aligned_cols=167  Identities=17%  Similarity=0.144  Sum_probs=105.0

Q ss_pred             EEEEecCCCcEEEEEeC--------------------C----CcEEEEEeecceeeeeecc--ccc----ccee-EEEe-
Q 001311          852 FLAFHPQDNNIIAIGMD--------------------D----SSIQIYNVRVDEVKSKLKG--HSK----RITG-LAFS-  899 (1102)
Q Consensus       852 ~l~~sp~d~~~lasg~~--------------------d----g~v~vwd~~~~~~~~~l~~--h~~----~V~~-l~~s-  899 (1102)
                      .++++| +..+++++..                    |    +.|.-+|..+|+.+-.++.  |..    .+.. +.+. 
T Consensus       250 ~~a~d~-~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~  328 (582)
T 1flg_A          250 SASFDA-ETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDY  328 (582)
T ss_dssp             CCEEET-TTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEE
T ss_pred             CceEcC-CCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEee
Confidence            467888 5566666653                    2    5899999999998877642  321    1122 2222 


Q ss_pred             --cCCC---EEEEEcCCCcEEEEEcCCCcccceeeeec----------CCC-------CCC--------C----------
Q 001311          900 --HALN---VLVSSGADSQLCVWSSDGWEKQKNRFLQI----------PTG-------RTP--------T----------  939 (1102)
Q Consensus       900 --~d~~---~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~----------~~~-------~~~--------~----------  939 (1102)
                        .+|+   .++.++.+|.++++|.++++..-......          ..+       ...        .          
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence              4674   78889999999999999887643221110          000       000        0          


Q ss_pred             --CCCCcEEEEccCCcEEEE-Ee---------------------------------CCeEEEEEcCCceEeeeeccCCCC
Q 001311          940 --AQSDTRVQFHQDQIHFLV-VH---------------------------------ETQLAIFETTKLECVKQWVPRESS  983 (1102)
Q Consensus       940 --~~~v~~~~~spdg~~l~~-~~---------------------------------d~~i~iwd~~~~~~~~~~~~~~h~  983 (1102)
                        ...-..++++|+...+++ ..                                 ++.|..||+.+++.+-......  
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--  486 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--  486 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--
Confidence              000124677776555544 21                                 4789999999999876654321  


Q ss_pred             CCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          984 APITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       984 ~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                       ++..-.+...+.+++.++.||.++.||.++|+.+-+++
T Consensus       487 -~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          487 -PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             -CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             -CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence             22221222246678889999999999999999999887

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.59  E-value=2.3e-05  Score=85.46  Aligned_cols=238  Identities=13%  Similarity=0.080  Sum_probs=147.3

Q ss_pred             CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC--------------------CCCCeeEEEEecCCCcEEEEE
Q 001311          808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP--------------------PPPAATFLAFHPQDNNIIAIG  866 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~--------------------~~~~i~~l~~sp~d~~~lasg  866 (1102)
                      ...+++++++++++.++. ++.|..|+..++... .+..                    ....+..+++.+++++ |.++
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            356788999998677766 889999998765432 2210                    0135788999973454 4455


Q ss_pred             eCCCcEEEEEeecceeeeeec----c-ccccceeEEEec-CCCEEEEEcC-----------------CCcEEEEEcCCCc
Q 001311          867 MDDSSIQIYNVRVDEVKSKLK----G-HSKRITGLAFSH-ALNVLVSSGA-----------------DSQLCVWSSDGWE  923 (1102)
Q Consensus       867 ~~dg~v~vwd~~~~~~~~~l~----~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~i~vwd~~~~~  923 (1102)
                      +..+.|..+|..+++. ..+.    + .......+++.+ +|++.++-..                 ++.|..||..+++
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5555588888765532 2221    1 113467899999 9988776543                 3668888877654


Q ss_pred             ccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce--EeeeeccCCCCCCeeEEEEcCCCcEEE
Q 001311          924 KQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE--CVKQWVPRESSAPITHATFSCDSQLVY  999 (1102)
Q Consensus       924 ~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~--~~~~~~~~~h~~~v~~l~~spd~~~l~  999 (1102)
                      ...  .....       .....++++++|++|.++  ..+.|.+|++.+..  ....+.. . .+ ...+++.++|++++
T Consensus       177 ~~~--~~~~~-------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~-~g-P~gi~~d~~G~l~v  244 (322)
T 2fp8_A          177 TTL--LLKEL-------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I-PN-PGNIKRNADGHFWV  244 (322)
T ss_dssp             EEE--EEEEE-------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C-SS-EEEEEECTTSCEEE
T ss_pred             EEE--eccCC-------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C-CC-CCCeEECCCCCEEE
Confidence            311  11111       134689999999877664  56789999987521  1111111 1 23 78899999999777


Q ss_pred             EEeC----------CCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1000 ACFL----------DATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1000 s~s~----------Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +...          .+.|..+|. .++.+..+.    .+.+...  ..+..+++.  ++++.++....+.|.++++....
T Consensus       245 a~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~----~~~g~~~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          245 SSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP----LPPPFAG--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             EEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE----CCTTTTT--SCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred             EecCcccccccCCCccEEEEECC-CCCEEEEEE----CCCCCcc--ccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence            6654          467888886 477777665    2222111  122356663  46777777778899999986544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.56  E-value=0.0071  Score=76.59  Aligned_cols=175  Identities=9%  Similarity=0.040  Sum_probs=106.5

Q ss_pred             CeEEEEEcCCCceeeeecCCCC-CeeEEE---EecCCCcEEEEEe----------CCCcEEEEEeecceeeeee-ccccc
Q 001311          827 GKISLFNMMTFKTMATFMPPPP-AATFLA---FHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKSKL-KGHSK  891 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~-~i~~l~---~sp~d~~~lasg~----------~dg~v~vwd~~~~~~~~~l-~~h~~  891 (1102)
                      +.|++.|..+++.+..+.-... .+.+++   |..+...+|++|+          ..|.|++|++..+++.... ....+
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g  886 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKG  886 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESS
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCC
Confidence            4688899888887766543333 344444   4332357888887          3589999999855432221 22457


Q ss_pred             cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEe-CCeEEE--EEc
Q 001311          892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVH-ETQLAI--FET  968 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-d~~i~i--wd~  968 (1102)
                      +|++|+-- +|++||..  ..+|++|++...+....... ..       ..+..+.....|.++++++ -..+.+  |+.
T Consensus       887 ~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~~-~~-------~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~  955 (1158)
T 3ei3_A          887 AVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTECN-HY-------NNIMALYLKTKGDFILVGDLMRSVLLLAYKP  955 (1158)
T ss_dssp             CEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEEE-EC-------CCSCEEEEEEETTEEEEEESSBCEEEEEEET
T ss_pred             cCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEee-cc-------ccEEEEEEeccCCEEEEEEhhheEEEEEEEc
Confidence            78887754 45555544  46799999976543221111 11       1234444545677887762 334444  555


Q ss_pred             CCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC
Q 001311          969 TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       969 ~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      ...+... +..+.+...++++.|-.++ .++.+..+|.|.+...+.
T Consensus       956 ~~~~L~~-~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          956 MEGNFEE-IARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             TTTEEEE-EEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             CCCeEEE-EEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            4444433 3334557889999987655 567788999999998754

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.55  E-value=3.9e-06  Score=85.11  Aligned_cols=184  Identities=9%  Similarity=0.054  Sum_probs=124.9

Q ss_pred             CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeE--EEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATF--LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~--l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                      .....+.|+. +.+..+.+ +|.|+++|+++++.++.+ - ......  +++.  ++++.+..-.++.+.+||..+.+.+
T Consensus        55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             CCEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEE
T ss_pred             cccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEE
Confidence            3346788873 44444445 789999999999998887 2 233433  5554  4566666667899999999999999


Q ss_pred             eeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311          884 SKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  962 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~  962 (1102)
                      .++..- ..-+.++  +|++.|+.+..+++|.++|.++.+.............   -..+..+.|. +|+..+.. .+..
T Consensus       130 ~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~---v~~lNeLe~~-dG~lyanvw~s~~  202 (268)
T 3nok_A          130 RTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQP---VELINELECA-NGVIYANIWHSSD  202 (268)
T ss_dssp             EEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEE---CCCEEEEEEE-TTEEEEEETTCSE
T ss_pred             EEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcc---cccccccEEe-CCEEEEEECCCCe
Confidence            988743 2224454  5788888777788999999998765443322221110   0123455666 77655555 6789


Q ss_pred             EEEEEcCCceEeeeeccCC-----------CCCCeeEEEEcCCCcEEEEEe
Q 001311          963 LAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus       963 i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~spd~~~l~s~s 1002 (1102)
                      |.+.|.++++.+..+...+           -..-.+.|||+|+++.|+..+
T Consensus       203 I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          203 VLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999999988876421           124668999999876665554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.53  E-value=1.5e-05  Score=80.24  Aligned_cols=203  Identities=11%  Similarity=0.118  Sum_probs=134.2

Q ss_pred             ceeeeecCCCCC--eeEEEEecCCCcEEEEEeCCC--cEEEEEeecceeeeeeccccccceeEEEecCCCEE-EEEcCCC
Q 001311          838 KTMATFMPPPPA--ATFLAFHPQDNNIIAIGMDDS--SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVL-VSSGADS  912 (1102)
Q Consensus       838 ~~~~~~~~~~~~--i~~l~~sp~d~~~lasg~~dg--~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l-~s~s~Dg  912 (1102)
                      +.+.++ .|...  ...+.|++  +.++.+.+.+|  .|+++|+.+++.+..+.-.. .........+++.| +..-.++
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw~~~   85 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTWRNH   85 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEeeCC
Confidence            345555 35543  66899985  56777777654  99999999999888775332 23333333334444 4455688


Q ss_pred             cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCCC---CCeeE
Q 001311          913 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRESS---APITH  988 (1102)
Q Consensus       913 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~  988 (1102)
                      .+.+||.++.+.......    +.       ....+++|++.|+++ .++.|.++|..+.+.++.+....+.   ..++.
T Consensus        86 ~v~v~D~~tl~~~~ti~~----~~-------~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNe  154 (243)
T 3mbr_X           86 EGFVYDLATLTPRARFRY----PG-------EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNE  154 (243)
T ss_dssp             EEEEEETTTTEEEEEEEC----SS-------CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEE
T ss_pred             EEEEEECCcCcEEEEEeC----CC-------CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCccccccee
Confidence            999999998765443222    11       234455778777775 6778999999999998887754332   34456


Q ss_pred             EEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCC---CCcccceEEEecCCCCCEEEEEec
Q 001311          989 ATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVS---SSNVHPLVIAAHPQEPNEFALGLS 1056 (1102)
Q Consensus       989 l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~---~~~v~~~~v~f~p~d~~~l~s~~~ 1056 (1102)
                      +.+. +|+.++..-.+..|.+.|..+|+.+..+......+....   ...-.+-+|+++|+.+.+++||-.
T Consensus       155 Le~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          155 LEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             eEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            6665 777666555678999999999999999986654432210   111223489999976666777643

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.51  E-value=0.00015  Score=78.26  Aligned_cols=245  Identities=13%  Similarity=0.060  Sum_probs=143.1

Q ss_pred             CCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311          335 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  414 (1102)
Q Consensus       335 ~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  414 (1102)
                      .+.++...+.-......++|+|+|+ |+++...++.|..||..... ...     +               .-...+..+
T Consensus        20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~~-~~~-----~---------------~~~~~p~gi   77 (306)
T 2p4o_A           20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQ-QIH-----A---------------TVEGKVSGL   77 (306)
T ss_dssp             CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCE-EEE-----E---------------ECSSEEEEE
T ss_pred             CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCce-EEE-----E---------------eCCCCceeE
Confidence            3444555555457789999999998 57777678999999987542 211     0               112368899


Q ss_pred             EEccCCCeEEEEECCC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee-eE
Q 001311          415 IWSPDGSLFGVAYSRH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QY  491 (1102)
Q Consensus       415 ~~spdg~~las~~~d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~-~~  491 (1102)
                      +++++|+++++.....  .|..+|..+++.. ....+. .......++..+++.  .+++...++.|.++|..+++. +.
T Consensus        78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~  153 (306)
T 2p4o_A           78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW  153 (306)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EEcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence            9999999766654432  4667777777642 222221 122334555555554  566666688999999776532 22


Q ss_pred             Eee---------cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          492 IFE---------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       492 ~~~---------~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      ...         +.....+.+  +++. +.+.++-...+.|..++++......     ...+.. .+             
T Consensus       154 ~~~~~~~~~~~~~~~~~pngi--s~dg-~~lyv~d~~~~~I~~~~~~~~g~~~-----~~~~~~-~~-------------  211 (306)
T 2p4o_A          154 LEHPMLARSNSESVFPAANGL--KRFG-NFLYVSNTEKMLLLRIPVDSTDKPG-----EPEIFV-EQ-------------  211 (306)
T ss_dssp             EECGGGSCSSTTCCSCSEEEE--EEET-TEEEEEETTTTEEEEEEBCTTSCBC-----CCEEEE-ES-------------
T ss_pred             EECCccccccccCCCCcCCCc--CcCC-CEEEEEeCCCCEEEEEEeCCCCCCC-----ccEEEe-cc-------------
Confidence            111         111223444  3332 2344555667899999987521110     000000 00             


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc---CCCCEEEEEECCC
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTNDN  628 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg  628 (1102)
                      .....++++++|+++++....+.|.++|.. ++...............+++|.   ++++.|++.+..+
T Consensus       212 ~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          212 TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            122336777787776666677899999975 5543322212122357889998   8888888776643

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.51  E-value=3.7e-05  Score=90.27  Aligned_cols=250  Identities=12%  Similarity=0.108  Sum_probs=150.8

Q ss_pred             EEEecCCCe----EEEEe-CCeEEEEEcCCCceeeeecCCC----CCeeE-EEEecCCCcEEEEEe------CCCcEEEE
Q 001311          812 FALSKNDSY----VMSAS-GGKISLFNMMTFKTMATFMPPP----PAATF-LAFHPQDNNIIAIGM------DDSSIQIY  875 (1102)
Q Consensus       812 l~~s~d~~~----las~s-dg~I~iwd~~~~~~~~~~~~~~----~~i~~-l~~sp~d~~~lasg~------~dg~v~vw  875 (1102)
                      ++++|.+..    |++++ |+.|.-+|..+++.+.......    ..+++ -.+.  ++. +++++      .+|.|+-+
T Consensus       111 ~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~-V~vg~~g~e~g~~g~v~A~  187 (599)
T 1w6s_A          111 LAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDK-VIIGSSGAELGVRGYLTAY  187 (599)
T ss_dssp             CEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTE-EEECCBCGGGTCCCEEEEE
T ss_pred             eEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE--CCE-EEEEecccccCCCCeEEEE
Confidence            455443333    66666 8999999999999887654322    02221 1222  444 44444      37999999


Q ss_pred             Eeecceeeeeecccccc-------------------------------------c-eeEEEecCCCEEEEEcCCC-----
Q 001311          876 NVRVDEVKSKLKGHSKR-------------------------------------I-TGLAFSHALNVLVSSGADS-----  912 (1102)
Q Consensus       876 d~~~~~~~~~l~~h~~~-------------------------------------V-~~l~~s~d~~~l~s~s~Dg-----  912 (1102)
                      |..+|+.+-++......                                     + ..+++.++..++..+..++     
T Consensus       188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~  267 (599)
T 1w6s_A          188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE  267 (599)
T ss_dssp             ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred             ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence            99999987665422110                                     1 1356667777777776653     


Q ss_pred             -----------cEEEEEcCCCcccceeeeecCCCC--CCCCCCCcEEEEc-cCC---cEEEEE-eCCeEEEEEcCCceEe
Q 001311          913 -----------QLCVWSSDGWEKQKNRFLQIPTGR--TPTAQSDTRVQFH-QDQ---IHFLVV-HETQLAIFETTKLECV  974 (1102)
Q Consensus       913 -----------~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s-pdg---~~l~~~-~d~~i~iwd~~~~~~~  974 (1102)
                                 .|..+|.++++..- .........  ........-+... .+|   ..++.+ .+|.++++|..+|+.+
T Consensus       268 ~~r~gd~~y~~sv~Ald~~TG~~~W-~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  346 (599)
T 1w6s_A          268 TMRPGDNKWTMTIFGRDADTGEAKF-GYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALV  346 (599)
T ss_dssp             GGSCSCCTTSSEEEEEETTTCCEEE-EEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCCCccccceEEEEeCCCCceee-EeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEe
Confidence                       78999999987532 211111000  0000011112222 567   445544 8899999999999987


Q ss_pred             eeeccCC-----------CCCCe--------------------------eEEEEcCCCcEEEEEe---------------
Q 001311          975 KQWVPRE-----------SSAPI--------------------------THATFSCDSQLVYACF--------------- 1002 (1102)
Q Consensus       975 ~~~~~~~-----------h~~~v--------------------------~~l~~spd~~~l~s~s--------------- 1002 (1102)
                      .......           ...++                          ..++|+|+..++++..               
T Consensus       347 w~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~  426 (599)
T 1w6s_A          347 SANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYK  426 (599)
T ss_dssp             EEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCC
T ss_pred             ecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccccc
Confidence            6654221           01111                          2467788777665431               


Q ss_pred             ------------------------CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCC
Q 001311         1003 ------------------------LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG 1058 (1102)
Q Consensus      1003 ------------------------~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg 1058 (1102)
                                              .+|.|..||+.+|+.+-+........       ..+  +..   .+.+++.++.||
T Consensus       427 ~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~-------~g~--~~t---agg~vf~gt~dg  494 (599)
T 1w6s_A          427 AGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVW-------GGT--MAT---AGDLVFYGTLDG  494 (599)
T ss_dssp             TTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCC-------SBC--EEE---TTTEEEEECTTS
T ss_pred             CCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCcc-------Ccc--eEe---cCCEEEEECCCC
Confidence                                    34789999999999887765111000       011  111   357888899999


Q ss_pred             cEEEEeccCCCcccccCCC
Q 001311         1059 GVHVFEPLESEGKWGVPPP 1077 (1102)
Q Consensus      1059 ~v~vW~~~~~~~~~~~~~~ 1077 (1102)
                      .|+.||..+++..|+..-+
T Consensus       495 ~l~A~D~~tG~~lW~~~l~  513 (599)
T 1w6s_A          495 YLKARDSDTGDLLWKFKIP  513 (599)
T ss_dssp             EEEEEETTTCCEEEEEECS
T ss_pred             eEEEEECCCCCEEEEeeCC
Confidence            9999999999988887543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.46  E-value=2.9e-05  Score=91.37  Aligned_cols=79  Identities=10%  Similarity=0.119  Sum_probs=54.0

Q ss_pred             CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc-eeEEEecCCCE
Q 001311          826 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALNV  904 (1102)
Q Consensus       826 dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~  904 (1102)
                      +|.|..||+.+++.+........ +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~q  542 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQ  542 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEE
Confidence            47799999999998766543322 21111222 35577789999999999999999998887544322 23677778864


Q ss_pred             EE
Q 001311          905 LV  906 (1102)
Q Consensus       905 l~  906 (1102)
                      .+
T Consensus       543 Yv  544 (582)
T 1flg_A          543 YL  544 (582)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.42  E-value=4.1e-05  Score=77.08  Aligned_cols=187  Identities=9%  Similarity=0.090  Sum_probs=124.8

Q ss_pred             CCCeeEEEEecCCCeEEEEe-C--CeEEEEEcCCCceeeeecCCCCC-eeEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001311          806 EEAVPCFALSKNDSYVMSAS-G--GKISLFNMMTFKTMATFMPPPPA-ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  881 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s-d--g~I~iwd~~~~~~~~~~~~~~~~-i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  881 (1102)
                      ......+.|+. +.++.+.+ +  +.|+.+|+.+++.++.+...... -..+++.  ++++.+..-.++.+.+||..+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            34466889986 45444444 3  48999999999998887643332 1334444  45666666788999999999999


Q ss_pred             eeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC
Q 001311          882 VKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE  960 (1102)
Q Consensus       882 ~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d  960 (1102)
                      .+.++.... .=+.+  ++|++.|+.+..+++|.++|.++.+......... .+..  -..+..+.+. +|+..+.. .+
T Consensus        97 ~~~ti~~~~-~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~--~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYPG-EGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRP--LDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             EEEEEECSS-CCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEE--CCCEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEeCCC-CceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcc--cccceeeEEe-CCEEEEEECCC
Confidence            999887432 22344  4577777766678899999999876544322221 1100  0122344444 67655555 67


Q ss_pred             CeEEEEEcCCceEeeeeccCC-----------CCCCeeEEEEcCCCcEEEEEe
Q 001311          961 TQLAIFETTKLECVKQWVPRE-----------SSAPITHATFSCDSQLVYACF 1002 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~-----------h~~~v~~l~~spd~~~l~s~s 1002 (1102)
                      ..|.+.|.++++.+..+...+           -..-.+.|+++|+++.|+..+
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            899999999999988876431           123568999999877766665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.40  E-value=2.6e-05  Score=95.57  Aligned_cols=159  Identities=12%  Similarity=0.087  Sum_probs=95.3

Q ss_pred             CeeEEEEe-cCCCeEEEEEecCC----eEEEEeCCCC-eeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          348 SPMSMDFH-PVQQTLLLVGTNVG----DIGLWEVGSR-ERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       348 ~v~~v~~s-pdg~~llasg~~d~----~i~iWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      .+...+|| |||++|+.+.+.+|    +|+++|+.++ +.+..                  .+   ......++|+|||+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~---~~~~~~~~WspDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KV---SGTNGEIVWGPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CE---EEECSCCEECSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------cc---cCceeeEEEecCCC
Confidence            67889999 99998666655443    5999999988 63210                  01   11234689999999


Q ss_pred             eEEEEECC-----CeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEec-CCCcEEEEeCCCCe-ee--E
Q 001311          422 LFGVAYSR-----HIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCG-DDKTIKVWDATNGA-KQ--Y  491 (1102)
Q Consensus       422 ~las~~~d-----~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~-~d~~i~vWd~~~~~-~~--~  491 (1102)
                      .|+....|     ..|.++++.++...... .+. .+......+.|+|||+.+++.+.. ....|.++|+.++. ..  .
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence            99887765     35888888776422111 122 223446788999999963333322 23468889988762 22  3


Q ss_pred             Ee-ecCCCCeEEEeeeecCCccEEEEEeCC--C--eEEEEEcCC
Q 001311          492 IF-EGHEAPVYSVCPHHKENIQFIFSTALD--G--KIKAWLYDN  530 (1102)
Q Consensus       492 ~~-~~h~~~v~~v~~~~~~~~~~l~s~s~d--g--~i~~wd~~~  530 (1102)
                      .+ .+..+...++.|+  .++.+++....+  +  .|..+++.+
T Consensus       313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred             EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence            33 3344555555432  222344444443  2  566666654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.39  E-value=0.00013  Score=78.58  Aligned_cols=228  Identities=10%  Similarity=-0.012  Sum_probs=136.0

Q ss_pred             cceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCC
Q 001311          740 TKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDS  819 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~  819 (1102)
                      .....++++++|+.+++-..++.|..|+...       ...     ..|.               ....+..++++++|+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-------~~~-----~~~~---------------~~~~p~gia~~~dG~   84 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-------NQQ-----IHAT---------------VEGKVSGLAFTSNGD   84 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-------CEE-----EEEE---------------CSSEEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCC-------ceE-----EEEe---------------CCCCceeEEEcCCCc
Confidence            3567899999998666655678887776421       100     0111               123578899999999


Q ss_pred             eEEEEe-CC--eEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce--eee--------e
Q 001311          820 YVMSAS-GG--KISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE--VKS--------K  885 (1102)
Q Consensus       820 ~las~s-dg--~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~--~~~--------~  885 (1102)
                      ++++.. .+  .|..++..+++....... .......++..+ ++..+++-..++.|+++|..+++  ...        .
T Consensus        85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~  163 (306)
T 2p4o_A           85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSN  163 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSS
T ss_pred             EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccccc
Confidence            666554 22  477777777765432221 122345556555 56555555468899999876542  210        0


Q ss_pred             eccccccceeEEEecCCCEEE-EEcCCCcEEEEEcCC-CcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCe
Q 001311          886 LKGHSKRITGLAFSHALNVLV-SSGADSQLCVWSSDG-WEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQ  962 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~~~l~-s~s~Dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~  962 (1102)
                      ..+.-.....|  ++|+++|. +-...+.|.+++++. ++..........       .....++++++|++.++. ..+.
T Consensus       164 ~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~-------~~P~gi~vd~dG~l~va~~~~~~  234 (306)
T 2p4o_A          164 SESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ-------TNIDDFAFDVEGNLYGATHIYNS  234 (306)
T ss_dssp             TTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES-------CCCSSEEEBTTCCEEEECBTTCC
T ss_pred             ccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc-------CCCCCeEECCCCCEEEEeCCCCe
Confidence            00111123445  88887654 555678899999875 332112222111       134789999999876663 5788


Q ss_pred             EEEEEcCCceEeeeeccCCCCCCeeEEEEc---CCCcEEEEEeCCC
Q 001311          963 LAIFETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDA 1005 (1102)
Q Consensus       963 i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s---pd~~~l~s~s~Dg 1005 (1102)
                      |.+++.. ++.............+++++|.   ||++.|+.++..+
T Consensus       235 V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          235 VVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             EEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             EEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence            9999975 5543221111224578999999   8988777666543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.36  E-value=0.00012  Score=79.70  Aligned_cols=255  Identities=10%  Similarity=0.077  Sum_probs=143.6

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCcc--cc-c---cccCCCCCCeEEEEEcc-C
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMP--LQ-A---ALVKDPGVSVNRVIWSP-D  419 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~~~h~~~V~~l~~sp-d  419 (1102)
                      ....+++|+++|+. +.++..++.|..||..+++...- ..     ......  .. .   .........+..+++.+ +
T Consensus        19 ~~p~~i~~d~~g~~-l~v~~~~~~i~~~~~~~~~~~~~-~~-----~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~   91 (322)
T 2fp8_A           19 YAPNSFTFDSTNKG-FYTSVQDGRVIKYEGPNSGFVDF-AY-----ASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQN   91 (322)
T ss_dssp             SCCCCEECCTTCSS-EEEECTTSEEEEECCTTTCEEEE-EE-----SCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTT
T ss_pred             CCceEEEEcCCCCE-EEEEcCCCeEEEECCCCCceEEE-ec-----ccccccccccccccchhccccCCCCceEEEcCCC
Confidence            45678999999984 67788889999999886543321 00     000000  00 0   00000123578999998 5


Q ss_pred             CCeEEEEECCCeEEEEEccCCceeeeEEE-eec-cccCEEEEEEcC-CCCeeEEEEecC-----------------CCcE
Q 001311          420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLE-IDA-HVGGVNDIAFSH-PNKQLCVITCGD-----------------DKTI  479 (1102)
Q Consensus       420 g~~las~~~d~~v~vwd~~~~~~~~~~~~-l~~-h~~~V~~v~~s~-d~~~~~l~s~~~-----------------d~~i  479 (1102)
                      |+ |.++...+.|..+|..++.. ..+.. ..+ .......+++.+ +|.  +.++...                 ++.|
T Consensus        92 g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v  167 (322)
T 2fp8_A           92 NQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRL  167 (322)
T ss_dssp             TE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred             Cc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceE
Confidence            55 55555555688888776532 22111 111 113478899999 887  4554322                 3678


Q ss_pred             EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEE-eCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeee
Q 001311          480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      ..||..+++......+ ......+++  ++++..|+.+ +..+.|.+|++.....        .....          +.
T Consensus       168 ~~~d~~~~~~~~~~~~-~~~p~gia~--~~dg~~lyv~d~~~~~I~~~~~~~~~~--------~~~~~----------~~  226 (322)
T 2fp8_A          168 IKYDPSTKETTLLLKE-LHVPGGAEV--SADSSFVLVAEFLSHQIVKYWLEGPKK--------GTAEV----------LV  226 (322)
T ss_dssp             EEEETTTTEEEEEEEE-ESCCCEEEE--CTTSSEEEEEEGGGTEEEEEESSSTTT--------TCEEE----------EE
T ss_pred             EEEeCCCCEEEEeccC-CccCcceEE--CCCCCEEEEEeCCCCeEEEEECCCCcC--------Cccce----------EE
Confidence            8999877765433222 223455676  4566655444 5678999999875311        00000          00


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeC----------CCeEEEEECCCcceEEEEcCCCC--CCCcCeEEEcCCCCEEEEEEC
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGD----------DFSIKFWDMDSVQLLTSIDADGG--LPASPRIRFNKDGCLLAVSTN  626 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~  626 (1102)
                      . ..+ ...++++++|++.++...          .+.|..+|. .++.+..+.....  ...+.++++ .+++++++...
T Consensus       227 ~-~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~  302 (322)
T 2fp8_A          227 K-IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLF  302 (322)
T ss_dssp             E-CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSS
T ss_pred             e-CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecC
Confidence            0 001 334666777776665443          467888887 4777766654332  234566666 35665555556


Q ss_pred             CCcEEEEEccC
Q 001311          627 DNGIKILATSD  637 (1102)
Q Consensus       627 dg~i~iwd~~~  637 (1102)
                      ++.|..+++..
T Consensus       303 ~~~i~~~~~~~  313 (322)
T 2fp8_A          303 HGSVGILVYDK  313 (322)
T ss_dssp             CSEEEEEEC--
T ss_pred             CCceEEEeccc
Confidence            78888888653

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.35  E-value=3e-05  Score=95.06  Aligned_cols=195  Identities=12%  Similarity=0.056  Sum_probs=110.6

Q ss_pred             CeeEEEEe-cCCCeEEEEe--CC----eEEEEEcCCC-ceeee-ecCCCCCeeEEEEecCCCcEEEEEeCC-----CcEE
Q 001311          808 AVPCFALS-KNDSYVMSAS--GG----KISLFNMMTF-KTMAT-FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQ  873 (1102)
Q Consensus       808 ~i~~l~~s-~d~~~las~s--dg----~I~iwd~~~~-~~~~~-~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~  873 (1102)
                      .+...+|| |||++||.+.  +|    +|+++|+.++ +.+.. +.   .....++|+| |++.|+....|     ..|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGP-DHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECS-STTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEec-CCCEEEEEEECCCCCCCEEE
Confidence            57789999 9999999765  22    4999999988 63211 11   1235689999 77777766655     3688


Q ss_pred             EEEeecceee--eeec-cccccceeEEEecCCCEEEEEcC---CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEE
Q 001311          874 IYNVRVDEVK--SKLK-GHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ  947 (1102)
Q Consensus       874 vwd~~~~~~~--~~l~-~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  947 (1102)
                      ++++.++...  ..+. .+.....++.|||||++|+..+.   ...|.++|+.++.... ....+..+..   .....+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~~~---~~~~s~~  326 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHN-TLEIVRPREK---GVRYDVQ  326 (751)
T ss_dssp             EEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCC-CEEESSCCCT---TCCEEEE
T ss_pred             EEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCc-eeEEeecCCC---CceEEEe
Confidence            8888765322  2222 22234567899999999886653   3458888888752111 0011222111   1233444


Q ss_pred             EccCCcEEEE-EeC-----CeEEEEEcCCceEeee-eccCCCCCCeeEEEEcCCCcEEEEEeCCCeE--EEEEc
Q 001311          948 FHQDQIHFLV-VHE-----TQLAIFETTKLECVKQ-WVPRESSAPITHATFSCDSQLVYACFLDATV--CVFSA 1012 (1102)
Q Consensus       948 ~spdg~~l~~-~~d-----~~i~iwd~~~~~~~~~-~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I--~vwd~ 1012 (1102)
                      |+. |..|+. +..     ..|..+++.++..... +........+..+.+. .+.++++...|+..  +++++
T Consensus       327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred             eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence            443 555444 422     2677778765322122 2211112245555554 34455677778864  45564

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.30  E-value=0.0011  Score=72.07  Aligned_cols=236  Identities=10%  Similarity=0.021  Sum_probs=133.4

Q ss_pred             CCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeec---CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311          806 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFM---PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  882 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~---~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  882 (1102)
                      ...+.++.+++ +..++++.++.|.. ....++.-....   .+...+..+++.+ ++.+++.+ .+|.|+.- ...|+.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~S-~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYRT-KDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEEE-SSTTSS
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEEE-cCCCCC
Confidence            44678899876 55566665775544 223333322222   2335578888877 67766655 46654321 112322


Q ss_pred             ee-eeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001311          883 KS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  961 (1102)
Q Consensus       883 ~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~  961 (1102)
                      -. ....+...+.++++.+++.+++.+...+..+-+|-. ++.  ...+...     ....+..+++++++..++++.+|
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t--W~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~G  225 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA--WEPHNRT-----TSRRLHNMGFTPDGRLWMIVNGG  225 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS--CEEEECC-----SSSCEEEEEECTTSCEEEEETTT
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc--eeECCCC-----CCCccceeEECCCCCEEEEeCCc
Confidence            11 123455678899999999888777544433334321 111  1122111     11367889999999988888888


Q ss_pred             eEEEEEcCCceEeeeeccC--CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccce
Q 001311          962 QLAIFETTKLECVKQWVPR--ESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1039 (1102)
Q Consensus       962 ~i~iwd~~~~~~~~~~~~~--~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 1039 (1102)
                      .+++.+...++.-..+...  .+...+.++++.+++.+++++ .+|.| .+..+.|+.-..+......+     ..++  
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~-----~~~~--  296 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVP-----SNFY--  296 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSS-----SCCC--
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCC-----CCeE--
Confidence            8877653434433332211  123468999999988877765 47777 45556665444333110011     1244  


Q ss_pred             EEEecCCCCCEEEEEecCCcEEEEec
Q 001311         1040 VIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1040 ~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                      .+.|.+  +..+++++.+|.|.-++-
T Consensus       297 ~v~~~~--~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          297 KILFFS--PDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEEEE--TTEEEEECSTTEEEEECC
T ss_pred             EEEEEC--CCceEEEcCCceEEEEcC
Confidence            677764  356777788998766553

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=0.00025  Score=80.22  Aligned_cols=247  Identities=9%  Similarity=0.039  Sum_probs=146.6

Q ss_pred             CeeEEEEec-CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC-CC----cEEEEEeecc
Q 001311          808 AVPCFALSK-NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS----SIQIYNVRVD  880 (1102)
Q Consensus       808 ~i~~l~~s~-d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg----~v~vwd~~~~  880 (1102)
                      ....++++| ++..|.++. .+.|+.+|+.++.... +.........++|++ ++++|+++.. ++    .+.+++ ..+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence            467899998 455666665 5789999998765443 333455689999999 7875555543 22    233344 333


Q ss_pred             eee--eeeccccccceeEEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          881 EVK--SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       881 ~~~--~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      ...  ..+. ......+++++| ++.++++-..++.|..++..++...  ........     .....++|+|+|++|.+
T Consensus       215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~--~~~~~~~~-----~~P~gia~~pdG~~lyv  286 (430)
T 3tc9_A          215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETT--PLFTIQDS-----GWEFHIQFHPSGNYAYI  286 (430)
T ss_dssp             TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEE--EEEECSSS-----SCCEEEEECTTSSEEEE
T ss_pred             ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEEEcCCC-----CcceeEEEcCCCCEEEE
Confidence            222  2222 123457789999 6777777777889999998865431  11222111     23578999999996666


Q ss_pred             E--eCCeEEEEEcCC--ceE--eeeeccC----CC---------CCCee-EEEEc--------CCCcEEEEEeCCCeEEE
Q 001311          958 V--HETQLAIFETTK--LEC--VKQWVPR----ES---------SAPIT-HATFS--------CDSQLVYACFLDATVCV 1009 (1102)
Q Consensus       958 ~--~d~~i~iwd~~~--~~~--~~~~~~~----~h---------~~~v~-~l~~s--------pd~~~l~s~s~Dg~I~v 1009 (1102)
                      +  ..+.|..++...  +..  +..+...    +.         -.... .+++.        ++|.++++=...+.|+.
T Consensus       287 ~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~  366 (430)
T 3tc9_A          287 VVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI  366 (430)
T ss_dssp             EETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred             EECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence            4  567899887653  222  1111100    10         11233 55553        34666666666788999


Q ss_pred             EEcCCceeEEEeCCCc--ccC--CC---CCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311         1010 FSAANLKLRCRINPSA--YLP--AG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1010 wd~~~~~~~~~~~~~~--~~~--~g---h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      ++ .+|..........  +..  .|   ....--.|..+++.|+++.++++-...+.|+.++++
T Consensus       367 i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          367 LT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             EC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             EC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence            98 5665544332100  000  01   001112577999998657777777777888888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.29  E-value=0.00028  Score=72.26  Aligned_cols=217  Identities=11%  Similarity=0.113  Sum_probs=134.0

Q ss_pred             eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec--cccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          842 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK--GHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       842 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      .+.+-...+..++|+|+++.++++...++.|...|.. ++.++.+.  +. ...-.|++.+++.++++.-.++.+.++++
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            4555567899999999556677778889999999987 77777763  32 34678899999987777767788999988


Q ss_pred             CCCcccc-eeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC---c---eEeee--eccCCCCCCeeEE
Q 001311          920 DGWEKQK-NRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK---L---ECVKQ--WVPRESSAPITHA  989 (1102)
Q Consensus       920 ~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~---~---~~~~~--~~~~~h~~~v~~l  989 (1102)
                      ....... .......-+..........++|+|++..|.++ ......+|.+..   .   .....  +....+...+.++
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            7644211 11222111112223567899999999777775 333344444431   1   11111  1111234568999


Q ss_pred             EEcCCC-cEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEe
Q 001311          990 TFSCDS-QLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus       990 ~~spd~-~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
                      ++.|.. ++++.......+.++|.. |+.+..+....-.. +-...-..+=.|+|.+ +|++.++ ++-+.++++.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCCEEEE-cCCceEEEEE
Confidence            999964 455666677889999966 55776666332110 0000012344899999 5776555 6666555544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.26  E-value=0.00055  Score=70.10  Aligned_cols=212  Identities=9%  Similarity=0.056  Sum_probs=127.3

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      -.+.+..++|+|++..|+++...++.|...|.. ++.+....                 +.+ ......|++.+++.+++
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v   85 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI   85 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence            346899999999988888888889999999998 77665422                 222 24678899999998777


Q ss_pred             EEECCCeEEEEEccCCceee--eEEEee----ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC---CCeeeEEee-
Q 001311          425 VAYSRHIVQIYSYHGGDEVR--QHLEID----AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT---NGAKQYIFE-  494 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~--~~~~l~----~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~---~~~~~~~~~-  494 (1102)
                      +.-.++.+.++++.....+.  ....+.    ........|+|+|+++.  |+++.......||.+.   .+..+..+. 
T Consensus        86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l~i~~~  163 (255)
T 3qqz_A           86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNELHISKD  163 (255)
T ss_dssp             EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCCEEEEC
T ss_pred             EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCceeeecc
Confidence            76677889999987655322  111111    23456789999999985  3333333333444432   112222221 


Q ss_pred             ------cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEE
Q 001311          495 ------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  568 (1102)
Q Consensus       495 ------~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  568 (1102)
                            .+...+.++++++. .+.+++.....+.|..+|.... ....+....+           ..-+ ...-...-.+
T Consensus       164 ~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g-----------~~~l-~~~~~qpEGi  229 (255)
T 3qqz_A          164 KALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKG-----------SRGL-SHNIKQAEGV  229 (255)
T ss_dssp             HHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTT-----------GGGC-SSCCCSEEEE
T ss_pred             hhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCc-----------cCCc-ccccCCCCee
Confidence                  13345678888764 4567777777888888886632 2222211110           0000 0000123346


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECC
Q 001311          569 QFDTTKNRFLAAGDDFSIKFWDMD  592 (1102)
Q Consensus       569 ~~~~~~~~l~~~~~dg~i~iwd~~  592 (1102)
                      +++++|+ |+..++.+.++.+...
T Consensus       230 a~d~~G~-lyIvsE~n~~y~f~~~  252 (255)
T 3qqz_A          230 AMDASGN-IYIVSEPNRFYRFTPQ  252 (255)
T ss_dssp             EECTTCC-EEEEETTTEEEEEEC-
T ss_pred             EECCCCC-EEEEcCCceEEEEEec
Confidence            6666666 5555887777777643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.25  E-value=0.00029  Score=79.61  Aligned_cols=248  Identities=8%  Similarity=0.025  Sum_probs=147.2

Q ss_pred             CeeEEEEecC--CCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC---C-cEEEEEeecc
Q 001311          808 AVPCFALSKN--DSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD---S-SIQIYNVRVD  880 (1102)
Q Consensus       808 ~i~~l~~s~d--~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---g-~v~vwd~~~~  880 (1102)
                      ....++++++  +..|..+. .+.|+.+|..++.... +.........++|++ +++++++...+   . .+...+...+
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence            4678999985  44555554 5889999997766543 444555689999999 77754443311   1 2333332221


Q ss_pred             eee-eeeccccccceeEEEec-CCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311          881 EVK-SKLKGHSKRITGLAFSH-ALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  958 (1102)
Q Consensus       881 ~~~-~~l~~h~~~V~~l~~s~-d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  958 (1102)
                      ... ..+. .-.....+++.+ ++.+.++-..++.|+.++..++..... ......  .   .....++|+|+|++|.++
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYva  290 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYII  290 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEEE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEEE
Confidence            110 1111 223456789999 677776766778899999876543111 111111  1   123469999999966664


Q ss_pred             --eCCeEEEEEcC--CceEe--eeecc----CC---------CCCCeeEEEE---------cCCCcEEEEEeCCCeEEEE
Q 001311          959 --HETQLAIFETT--KLECV--KQWVP----RE---------SSAPITHATF---------SCDSQLVYACFLDATVCVF 1010 (1102)
Q Consensus       959 --~d~~i~iwd~~--~~~~~--~~~~~----~~---------h~~~v~~l~~---------spd~~~l~s~s~Dg~I~vw 1010 (1102)
                        ..+.|+.++..  ++...  ..+..    .+         .-.....+++         .++|.++++-...+.|+.+
T Consensus       291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~  370 (433)
T 4hw6_A          291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL  370 (433)
T ss_dssp             ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred             eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence              56789988765  33211  11110    01         1234678999         7778777777777899999


Q ss_pred             EcCCceeEEEeCCCc-----ccCCC---CCCCcccceEEEecCCCCCEEEEEecCCcEEEEecc
Q 001311         1011 SAANLKLRCRINPSA-----YLPAG---VSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1011 d~~~~~~~~~~~~~~-----~~~~g---h~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                      +. +|..........     + ..|   ....--+|..|++.|.++.++++-...+.|+.++++
T Consensus       371 ~~-~G~v~t~~G~g~~~~~G~-~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          371 TP-EGRVTTYAGRGNSREWGY-VDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CT-TSEEEEEECCCTTCSSCC-BCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             CC-CCCEEEEEeCCCCCcccc-CCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence            84 665543332111     0 001   001123477999996577888877778888888774

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.24  E-value=0.00091  Score=72.20  Aligned_cols=208  Identities=6%  Similarity=-0.056  Sum_probs=130.2

Q ss_pred             CCCeeEEEEecCCCeEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          806 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      ...+..++|++++..|..+.  ++.|..+++.+    ......+.........+++++.+++++++-..++.|.++++..
T Consensus        29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g  108 (316)
T 1ijq_A           29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (316)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence            34578999998877776665  68899999876    2222223323345688999874556666666778999999865


Q ss_pred             ceeeeeeccccccceeEEEecCCCEEEEEcCC--CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD--SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      ......+........++++.|++..|..+...  +.|...++++...   ..+.....     .....+++++++..|..
T Consensus       109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~---~~~~~~~~-----~~P~gla~d~~~~~lY~  180 (316)
T 1ijq_A          109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVTENI-----QWPNGITLDLLSGRLYW  180 (316)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEECSSC-----SCEEEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe---EEEEECCC-----CCceEEEEeccCCEEEE
Confidence            43322233233456889999876666555443  6788888865321   11111111     24578999998877776


Q ss_pred             E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          958 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       958 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +  ..+.|..+|.....................+++. .+.++++-...+.|..++..+|+.+..+.
T Consensus       181 ~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence            5  5578999998753322221111223456788885 45566666677899999988887666554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.22  E-value=0.0015  Score=71.57  Aligned_cols=205  Identities=10%  Similarity=-0.006  Sum_probs=132.8

Q ss_pred             CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      ..+..++|++.+..|....  .+.|..+++........+.........+++.+.+++++++-...+.|.+.++.......
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            3478999998777777665  68899999887654444443344578899997456666666667899999976543222


Q ss_pred             eeccccccceeEEEecCCCEEEEE-cCC-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001311          885 KLKGHSKRITGLAFSHALNVLVSS-GAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  960 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d~~~l~s~-s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d  960 (1102)
                      .+...-....+|++.|++..|... ..+ +.|...++++....   .  .....   ......+++++++..|..+  ..
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~---~--~~~~~---~~~PnGla~d~~~~~lY~aD~~~  224 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR---I--IADTH---LFWPNGLTIDYAGRRMYWVDAKH  224 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE---E--SCCSS---CSCEEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE---E--EEECC---CCCcceEEEeCCCCEEEEEECCC
Confidence            233333456889999866655544 344 67888888763221   1  11111   1245789999977777664  56


Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +.|..++.........+.  ........+++ .++.++++-...+.|..++..+|+.+..+.
T Consensus       225 ~~I~~~~~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          225 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             TEEEEEETTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEEeCCCCceEEEEe--CCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            789999987543322222  22456788888 355555666667889988877777666554

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.22  E-value=0.00074  Score=73.99  Aligned_cols=237  Identities=12%  Similarity=0.044  Sum_probs=147.6

Q ss_pred             eeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc
Q 001311          809 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  888 (1102)
Q Consensus       809 i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~  888 (1102)
                      .+|.+..+ ..+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++........+..
T Consensus        36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~  113 (349)
T 3v64_C           36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST  113 (349)
T ss_dssp             SCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred             Cccccccc-CceeEeecccceEEEeCCCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence            45555555 345666666678888887655444443 3445899999984565666655778999999876543333332


Q ss_pred             ccccceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC-CeEE
Q 001311          889 HSKRITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE-TQLA  964 (1102)
Q Consensus       889 h~~~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d-~~i~  964 (1102)
                      ......++++.+.+. +.++-...+.|.+.++++...  .....  .+ .   .....++++|.+..|..+  .. +.|.
T Consensus       114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~--~~l~~--~~-l---~~P~~iavdp~~g~ly~td~~~~~~I~  185 (349)
T 3v64_C          114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLLW--QS-L---EKPRAIALHPMEGTIYWTDWGNTPRIE  185 (349)
T ss_dssp             SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEC--TT-C---SCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred             CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--EEEEe--CC-C---CCcceEEEecCcCeEEEeccCCCCEEE
Confidence            334467899997554 455666678899999876432  11111  11 1   245889999976666654  34 6788


Q ss_pred             EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEe-CCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEe
Q 001311          965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF-LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1043 (1102)
Q Consensus       965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f 1043 (1102)
                      .++.+.........  ..-.....|+|+|++..|+.+. ..+.|..+|++.......+...          .-.|.++++
T Consensus       186 r~~~dG~~~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~----------~~~P~giav  253 (349)
T 3v64_C          186 ASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG----------LPHPFAITV  253 (349)
T ss_dssp             EEETTSCSCEESCC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----------CSSEEEEEE
T ss_pred             EEeCCCCCcEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC----------CCCceEEEE
Confidence            88876543322221  2245688999998777665554 5678999998754333222200          123556777


Q ss_pred             cCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1044 HPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1044 ~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      .  ++.+.++-...+.|...+..+++
T Consensus       254 ~--~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          254 F--EDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             E--TTEEEEEETTTTEEEEEETTTCC
T ss_pred             E--CCEEEEecCCCCeEEEEEccCCC
Confidence            4  45677777777888888865665

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.17  E-value=0.00015  Score=87.60  Aligned_cols=237  Identities=10%  Similarity=-0.025  Sum_probs=129.8

Q ss_pred             CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCC-CeeEEEEecCCCcEEEEEe-CC-----CcEEEEEee
Q 001311          808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPP-AATFLAFHPQDNNIIAIGM-DD-----SSIQIYNVR  878 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~-~i~~l~~sp~d~~~lasg~-~d-----g~v~vwd~~  878 (1102)
                      ...++++..++++++.|+  ++.+.+||..+.+-...-..+.. .-.++++.+ ++++++.|+ .+     ..+.+||..
T Consensus       244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~  322 (656)
T 1k3i_A          244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS  322 (656)
T ss_dssp             SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred             ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence            344678889999999987  46899999887543322111212 123455666 788999988 44     479999998


Q ss_pred             cceeeeee----ccccccceeEEEecCCCEEEEEcCCC---------cEEEEEcCCCcccceeeeecCCCC---CCCCCC
Q 001311          879 VDEVKSKL----KGHSKRITGLAFSHALNVLVSSGADS---------QLCVWSSDGWEKQKNRFLQIPTGR---TPTAQS  942 (1102)
Q Consensus       879 ~~~~~~~l----~~h~~~V~~l~~s~d~~~l~s~s~Dg---------~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~  942 (1102)
                      +++-...-    ......-....+..++..++.++.|+         .+..||..+.....  ........   ......
T Consensus       323 t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~--~~~~~~~~~~~~~~~~~  400 (656)
T 1k3i_A          323 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVK--SAGKRQSNRGVAPDAMC  400 (656)
T ss_dssp             TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEE--EEEECEETTEECCCCBT
T ss_pred             CCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceee--cCCccccccccCCCCCC
Confidence            76532210    00000000012234555555555443         46788887654211  11111100   000012


Q ss_pred             CcEEEEcc-CCcEEEEE-eCC-----------eEEEEEcCCceEeeeeccCCC-CCCeeEEEEcCCCcEEEEEeCC----
Q 001311          943 DTRVQFHQ-DQIHFLVV-HET-----------QLAIFETTKLECVKQWVPRES-SAPITHATFSCDSQLVYACFLD---- 1004 (1102)
Q Consensus       943 v~~~~~sp-dg~~l~~~-~d~-----------~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~D---- 1004 (1102)
                      -..+.|.. +++.++++ .++           .+.+||..+...........+ ...-.+++..|||++++.|+.+    
T Consensus       401 ~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~  480 (656)
T 1k3i_A          401 GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP  480 (656)
T ss_dssp             CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT
T ss_pred             CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC
Confidence            24455543 67777774 321           688889888766543201112 2233456778899999999865    


Q ss_pred             -------CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEec
Q 001311         1005 -------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1056 (1102)
Q Consensus      1005 -------g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~ 1056 (1102)
                             ..+.+||..+++-.. +.   .++.....+    ......| |+++++.|+.
T Consensus       481 ~~~~~~~~~v~~ydp~t~~W~~-~~---~~~~~R~~h----s~a~ll~-dg~v~v~GG~  530 (656)
T 1k3i_A          481 FEDSTPVFTPEIYVPEQDTFYK-QN---PNSIVRVYH----SISLLLP-DGRVFNGGGG  530 (656)
T ss_dssp             TCCCSBCCCCEEEEGGGTEEEE-CC---CCSSCCCTT----EEEEECT-TSCEEEEECC
T ss_pred             cCCCCcccceEEEcCCCCceee-cC---CCCCccccc----cHhhcCC-CcEEEecCCC
Confidence                   468999998876543 21   111111011    1233446 6889999985

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.16  E-value=0.001  Score=73.98  Aligned_cols=205  Identities=10%  Similarity=-0.012  Sum_probs=133.3

Q ss_pred             CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      ..+..++|++.+..|....  .+.|+.+++........+.........+++++.+++++++-...+.|.+.++.......
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~  195 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  195 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEE
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEE
Confidence            4578899998777776665  68899999887654444443344567899997456666666667788888876443323


Q ss_pred             eeccccccceeEEEecCCCEEEEEc-CC-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001311          885 KLKGHSKRITGLAFSHALNVLVSSG-AD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  960 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d~~~l~s~s-~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d  960 (1102)
                      .+........+|++.|++..|..+. .+ +.|...++++...  .....  .+.    .....++|+|++..|..+  ..
T Consensus       196 l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~--~~~----~~PnGlavd~~~~~lY~aD~~~  267 (386)
T 3v65_B          196 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR--RIIAD--THL----FWPNGLTIDYAGRRMYWVDAKH  267 (386)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEEC--SSC----SCEEEEEEEGGGTEEEEEETTT
T ss_pred             eecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc--EEEEE--CCC----CCeeeEEEeCCCCEEEEEECCC
Confidence            3333334568899998766665544 33 6788888776322  11111  111    234789999877777664  56


Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +.|..++.........+.  ........+++ ..+.++++-...+.|..++..+|+.+..+.
T Consensus       268 ~~I~~~d~dG~~~~~~~~--~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          268 HVIERANLDGSHRKAVIS--QGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             TEEEEECTTSCSCEEEEC--SSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEEeCCCCeeEEEEE--CCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence            789999987543322222  22456788888 455566666677889999977887776665

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.12  E-value=0.0043  Score=67.21  Aligned_cols=193  Identities=12%  Similarity=0.053  Sum_probs=112.4

Q ss_pred             CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEE-EEe--eccee
Q 001311          807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQI-YNV--RVDEV  882 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~v-wd~--~~~~~  882 (1102)
                      ..+..+.+.++++.++++.++.|.. ....++.-. ...+....+..+++.+ ++.+++++. +|.++. +|-  .+.+.
T Consensus       122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~  198 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP  198 (327)
T ss_dssp             SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred             CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence            3467788878888777776665432 112232222 2234456789999999 788887664 455444 331  22233


Q ss_pred             eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCe
Q 001311          883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQ  962 (1102)
Q Consensus       883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~  962 (1102)
                      +.  ......+..+++.++++.++. +.+|.+++++.+.++.  ...+...  .......+..+++.+++..++++.++.
T Consensus       199 ~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~t--W~~~~~~--~~~~~~~~~~v~~~~~~~~~~~g~~g~  271 (327)
T 2xbg_A          199 HN--RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSEN--WGELLSP--LRRNSVGFLDLAYRTPNEVWLAGGAGA  271 (327)
T ss_dssp             EE--CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEE--ECCCBCT--TSSCCSCEEEEEESSSSCEEEEESTTC
T ss_pred             CC--CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCe--eEeccCC--cccCCcceEEEEecCCCEEEEEeCCCe
Confidence            22  234567888999999876654 4578777765332221  1111111  001112467889999999888888887


Q ss_pred             EEEEEcCCceEeeeecc-CCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEE
Q 001311          963 LAIFETTKLECVKQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFS 1011 (1102)
Q Consensus       963 i~iwd~~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd 1011 (1102)
                      + .+..+.|+.-..+.. ..+...+.++.|.++++ +++++.+|.|.-++
T Consensus       272 i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          272 L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            7 444554543322221 12245688899986665 55566799877665

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.11  E-value=0.0022  Score=71.70  Aligned_cols=208  Identities=6%  Similarity=-0.042  Sum_probs=133.7

Q ss_pred             CCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          806 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      ...+..++|++.+..|..+.  .+.|+.+++...    .....+.........+++.+.+++++++-...+.|.+.++..
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            45678999998777777765  688999998752    223333334456889999974566666666778999998875


Q ss_pred             ceeeeeeccccccceeEEEecCCCEEEEEcC--CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA--DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~--Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      ......+...-....+|++.|.+.+|.....  .+.|...++++....  ....  .+ .   .....+++++++..|..
T Consensus       191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~--~~~~--~~-l---~~P~glavd~~~~~lY~  262 (400)
T 3p5b_L          191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLVT--EN-I---QWPNGITLDLLSGRLYW  262 (400)
T ss_dssp             CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE--EEEC--SS-C---SCEEEEEEETTTTEEEE
T ss_pred             CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE--EEEE--CC-C---CceEEEEEEeCCCEEEE
Confidence            4433333333345688999997666655542  367888888764321  1111  11 0   24588999998887777


Q ss_pred             E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          958 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       958 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +  ..+.|..+|++...........+.......+++. .+.++++-...+.|..+|..+|+.+..+.
T Consensus       263 aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          263 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence            5  4678999998754433332222224456778873 34555666667889999988887766654

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.09  E-value=0.0042  Score=66.95  Aligned_cols=224  Identities=10%  Similarity=0.006  Sum_probs=126.3

Q ss_pred             CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECCCeEEEEEccCC---ceee
Q 001311          369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGG---DEVR  444 (1102)
Q Consensus       369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~vwd~~~~---~~~~  444 (1102)
                      ..|+..|+.+.+....                   + .....+..++|++++..|..+ ..++.|..+++.+.   ....
T Consensus        10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~   69 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD   69 (316)
T ss_dssp             SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence            6788899887654331                   1 123467899999976666555 45689999998762   2222


Q ss_pred             eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCC-CeE
Q 001311          445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALD-GKI  523 (1102)
Q Consensus       445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~d-g~i  523 (1102)
                      .  .+...-.....+++.+.+.. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus        70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI  145 (316)
T ss_dssp             E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred             E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence            1  12222245688999876664 4566667889999997654433333333455677776432 33344444333 677


Q ss_pred             EEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcC
Q 001311          524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~  602 (1102)
                      ...+++.............                     ....+++++++..|+.+. ..+.|..+|++..........
T Consensus       146 ~~~~~dG~~~~~~~~~~~~---------------------~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~  204 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTENIQ---------------------WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED  204 (316)
T ss_dssp             EEEETTSCCEEEEECSSCS---------------------CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC
T ss_pred             EEEcCCCCCeEEEEECCCC---------------------CceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec
Confidence            7776653221111111112                     234455665555565554 567899999874333222222


Q ss_pred             CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          603 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       603 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      .........+++. .+..+++-...+.|..++..++
T Consensus       205 ~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g  239 (316)
T 1ijq_A          205 EKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  239 (316)
T ss_dssp             TTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             CCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCC
Confidence            2222234577775 3555555556778888887666

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.08  E-value=0.0018  Score=71.97  Aligned_cols=216  Identities=10%  Similarity=-0.030  Sum_probs=128.9

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      .........+..++|++.+..|+.+-...+.|..++.........                   +.........+++.+.
T Consensus       109 ~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~-------------------~~~~~~~p~glavd~~  169 (386)
T 3v65_B          109 TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV-------------------VSTGLESPGGLAVDWV  169 (386)
T ss_dssp             EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE-------------------ECSSCSCCCCEEEETT
T ss_pred             EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE-------------------EeCCCCCccEEEEEeC
Confidence            334445567899999998877777777788999999886543221                   1222234577999986


Q ss_pred             CCeE-EEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCC-CcEEEEeCCCCeeeEEeecCC
Q 001311          420 GSLF-GVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDD-KTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       420 g~~l-as~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d-~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      +..| ++-...+.|.+.++++.....   .+.........|++.|.+.. ++++-... +.|...++.............
T Consensus       170 ~g~lY~~d~~~~~I~~~~~dg~~~~~---l~~~~l~~P~giavdp~~g~-ly~td~~~~~~I~r~~~dG~~~~~~~~~~~  245 (386)
T 3v65_B          170 HDKLYWTDSGTSRIEVANLDGAHRKV---LLWQSLEKPRAIALHPMEGT-IYWTDWGNTPRIEASSMDGSGRRIIADTHL  245 (386)
T ss_dssp             TTEEEEEETTTTEEEECBTTSCSCEE---EECSSCSCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred             CCeEEEEcCCCCeEEEEeCCCCceEE---eecCCCCCCcEEEEEcCCCe-EEEeccCCCCEEEEEeCCCCCcEEEEECCC
Confidence            5555 444556788888887654221   12233356789999988775 34444444 788888865433333333334


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      ...+.+++++.. +.+.++-+..+.|..+|++.......+........                     .+++ ..+..+
T Consensus       246 ~~PnGlavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~---------------------giav-~~~~ly  302 (386)
T 3v65_B          246 FWPNGLTIDYAG-RRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPF---------------------AITV-FEDSLY  302 (386)
T ss_dssp             SCEEEEEEEGGG-TEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEE---------------------EEEE-ETTEEE
T ss_pred             CCeeeEEEeCCC-CEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCce---------------------EEEE-ECCEEE
Confidence            456788885433 34455555678888888765332222221112222                     2333 122334


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEc
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSID  601 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~  601 (1102)
                      ++-...+.|..+|..+++.+..+.
T Consensus       303 ~td~~~~~V~~~~~~~G~~~~~i~  326 (386)
T 3v65_B          303 WTDWHTKSINSANKFTGKNQEIIR  326 (386)
T ss_dssp             EEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EeeCCCCeEEEEECCCCcceEEEc
Confidence            444567778888866666655554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.06  E-value=0.00025  Score=85.57  Aligned_cols=243  Identities=12%  Similarity=0.021  Sum_probs=139.3

Q ss_pred             EEEEec-CCCeEEEEe-CC-----------eEEEEEcCCCcee--eeecC-CCCCeeEEEEecCCCcEEEEEeC-CCcEE
Q 001311          811 CFALSK-NDSYVMSAS-GG-----------KISLFNMMTFKTM--ATFMP-PPPAATFLAFHPQDNNIIAIGMD-DSSIQ  873 (1102)
Q Consensus       811 ~l~~s~-d~~~las~s-dg-----------~I~iwd~~~~~~~--~~~~~-~~~~i~~l~~sp~d~~~lasg~~-dg~v~  873 (1102)
                      .+++.+ +++.++.|+ +.           .+.+||..+.+-.  ..+.. +.....++++.. +++++++|+. +..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT-TSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCC-CCCEEEeCCCCCCceE
Confidence            567777 888888875 21           5889998876532  22322 333345677778 8999999984 45899


Q ss_pred             EEEeecceeeeeeccccccc-eeEEEecCCCEEEEEc-CC-----CcEEEEEcCCCcccceee---eecCCCCCCCCCCC
Q 001311          874 IYNVRVDEVKSKLKGHSKRI-TGLAFSHALNVLVSSG-AD-----SQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQSD  943 (1102)
Q Consensus       874 vwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~~l~s~s-~D-----g~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v  943 (1102)
                      +||..+++-...-.-+..+. .++++.+++++++.|+ .+     ..+.+||..+.+-.....   .......       
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-------  341 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-------  341 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-------
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-------
Confidence            99998765332222122222 2355667999999998 44     468999998754211100   0011100       


Q ss_pred             cEEEEccCCcEEEE----------EeCCeEEEEEcCCceEeeeeccCC-------CCCCeeEEEEc-CCCcEEEEEeCCC
Q 001311          944 TRVQFHQDQIHFLV----------VHETQLAIFETTKLECVKQWVPRE-------SSAPITHATFS-CDSQLVYACFLDA 1005 (1102)
Q Consensus       944 ~~~~~spdg~~l~~----------~~d~~i~iwd~~~~~~~~~~~~~~-------h~~~v~~l~~s-pd~~~l~s~s~Dg 1005 (1102)
                      ....+..+++.++.          +....+..||..+...........       ....-.++.|. .++++++.|+.++
T Consensus       342 ~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~  421 (656)
T 1k3i_A          342 KQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPD  421 (656)
T ss_dssp             TTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSS
T ss_pred             ccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCC
Confidence            00112233333333          234567889988776443322110       01123444554 4788888888543


Q ss_pred             -----------eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-----------CcEEEE
Q 001311         1006 -----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----------GGVHVF 1063 (1102)
Q Consensus      1006 -----------~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----------g~v~vW 1063 (1102)
                                 .|.+||..+..-....  ...++.....+     +....| |+++++.|+.+           ..+.+|
T Consensus       422 ~~~~~~~~~~~~v~~yd~~~~~W~~~~--~~~mp~~R~~~-----~~~~l~-~g~i~v~GG~~~~~~~~~~~~~~~v~~y  493 (656)
T 1k3i_A          422 YQDSDATTNAHIITLGEPGTSPNTVFA--SNGLYFARTFH-----TSVVLP-DGSTFITGGQRRGIPFEDSTPVFTPEIY  493 (656)
T ss_dssp             SSSSBCCCCEEEEECCSTTSCCEEEEC--TTCCSSCCBSC-----EEEECT-TSCEEEECCBSBCCTTCCCSBCCCCEEE
T ss_pred             CCCCCcCCcceEEEcCCCCCCCeeEEc--cCCCCCCcccC-----CeEECC-CCCEEEECCcccCcCcCCCCcccceEEE
Confidence                       6888888877654332  01123221111     345556 57899999865           468999


Q ss_pred             eccCCC
Q 001311         1064 EPLESE 1069 (1102)
Q Consensus      1064 ~~~~~~ 1069 (1102)
                      |+.+.+
T Consensus       494 dp~t~~  499 (656)
T 1k3i_A          494 VPEQDT  499 (656)
T ss_dssp             EGGGTE
T ss_pred             cCCCCc
Confidence            998754

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.00  E-value=0.0019  Score=68.58  Aligned_cols=196  Identities=9%  Similarity=0.147  Sum_probs=125.4

Q ss_pred             CCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCC----c---EEEEEeC---CCcEEEEEee--cceee
Q 001311          817 NDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN----N---IIAIGMD---DSSIQIYNVR--VDEVK  883 (1102)
Q Consensus       817 d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~----~---~lasg~~---dg~v~vwd~~--~~~~~  883 (1102)
                      ...+++... .+.+.+||+ +++.+..+..  +.+..+..-| +-    +   ++++...   +++|.+|++.  +++ +
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l  113 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-L  113 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-E
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-e
Confidence            334444444 688999999 7888888864  5677777766 32    1   2333333   5799999884  333 4


Q ss_pred             eeecc------cc-ccceeEEE--ecC-CC-EEEEEcCCCcEEEEEcCC---CcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311          884 SKLKG------HS-KRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDG---WEKQKNRFLQIPTGRTPTAQSDTRVQFH  949 (1102)
Q Consensus       884 ~~l~~------h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s  949 (1102)
                      ..+..      .. ..+..+|+  ++. ++ ++++...+|.+..|++..   +.... .....+.-.    ..+..++..
T Consensus       114 ~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~-~lVR~f~lg----sq~EgcvvD  188 (355)
T 3amr_A          114 QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISG-KKVRAFKMN----SQTEGMAAD  188 (355)
T ss_dssp             EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEE-EEEEEEECS----SCEEEEEEE
T ss_pred             eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccc-eEEEEecCC----CCcceEEEc
Confidence            43321      11 56778888  664 44 688888899999999843   22222 222222211    357889999


Q ss_pred             cCCcEEEEE-eCCeEEEEEcC-----CceEeeeeccCCCCCCeeEEEE--cCCCc-EEEEEe-CCCeEEEEEcC-CceeE
Q 001311          950 QDQIHFLVV-HETQLAIFETT-----KLECVKQWVPRESSAPITHATF--SCDSQ-LVYACF-LDATVCVFSAA-NLKLR 1018 (1102)
Q Consensus       950 pdg~~l~~~-~d~~i~iwd~~-----~~~~~~~~~~~~h~~~v~~l~~--spd~~-~l~s~s-~Dg~I~vwd~~-~~~~~ 1018 (1102)
                      +...+|.++ .+..|..|+.+     +++.+..+....-...+..|++  .++++ ||++++ .+.+..|||.. +.+.+
T Consensus       189 d~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v  268 (355)
T 3amr_A          189 DEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV  268 (355)
T ss_dssp             TTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred             CCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence            988888887 44556666654     3455554432222347888888  56666 666666 67799999997 78888


Q ss_pred             EEeC
Q 001311         1019 CRIN 1022 (1102)
Q Consensus      1019 ~~~~ 1022 (1102)
                      ..|.
T Consensus       269 g~f~  272 (355)
T 3amr_A          269 ADFR  272 (355)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8885

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=0.0024  Score=71.96  Aligned_cols=253  Identities=9%  Similarity=0.011  Sum_probs=149.2

Q ss_pred             CeeEEEEec-CCCeEEEEe--CCeEEEEEcCCCceeeeecCC---CCCeeEEEE-------ecCCCcEEEEEeCCC----
Q 001311          808 AVPCFALSK-NDSYVMSAS--GGKISLFNMMTFKTMATFMPP---PPAATFLAF-------HPQDNNIIAIGMDDS----  870 (1102)
Q Consensus       808 ~i~~l~~s~-d~~~las~s--dg~I~iwd~~~~~~~~~~~~~---~~~i~~l~~-------sp~d~~~lasg~~dg----  870 (1102)
                      ....|+|+| +...|.++.  .+.|++.|..++.........   ......++|       ++ +++.|+++...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence            467899998 455555554  367999998876665444322   235899999       99 777565555443    


Q ss_pred             ---cEEEEEeec-ceee-----eeeccccccceeEEEecC-CCEEEEEcCCCcEEEEEcC-------CCcc------c--
Q 001311          871 ---SIQIYNVRV-DEVK-----SKLKGHSKRITGLAFSHA-LNVLVSSGADSQLCVWSSD-------GWEK------Q--  925 (1102)
Q Consensus       871 ---~v~vwd~~~-~~~~-----~~l~~h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~-------~~~~------~--  925 (1102)
                         .|.+++... +...     ..+.. -....+++++|+ +.++++-..++.|..+|++       ++..      .  
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence               266665443 2221     12221 123467889995 5566667778889999997       4432      0  


Q ss_pred             --ceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcC--CceEe--eeec----cCCC---------CC
Q 001311          926 --KNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETT--KLECV--KQWV----PRES---------SA  984 (1102)
Q Consensus       926 --~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~--~~~~~--~~~~----~~~h---------~~  984 (1102)
                        ...+......     .....++|+|+|++|.++  ....|+.++..  ++...  ..+.    ..+.         -.
T Consensus       298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~  372 (496)
T 3kya_A          298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN  372 (496)
T ss_dssp             TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred             cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence              0112222221     235789999999966554  56788886543  33221  1111    1111         12


Q ss_pred             Cee-EEEEc-------CCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCccc-----------CCC---CCCCcccceEEE
Q 001311          985 PIT-HATFS-------CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYL-----------PAG---VSSSNVHPLVIA 1042 (1102)
Q Consensus       985 ~v~-~l~~s-------pd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~-----------~~g---h~~~~v~~~~v~ 1042 (1102)
                      ... .++..       .+|.++++=...+.|+.++ .+|.. .++.-....           ..|   ....--.|..|+
T Consensus       373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa  450 (496)
T 3kya_A          373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV  450 (496)
T ss_dssp             SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred             CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence            344 45554       5667777767788999999 56644 333211000           011   011123477999


Q ss_pred             ecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1043 AHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1043 f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +.++++.++++-...+.|+.++++...
T Consensus       451 vd~~~g~lyVaD~~N~rIrki~~~~~~  477 (496)
T 3kya_A          451 YDDVKEMFYVHDQVGHTIRTISMEQEE  477 (496)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred             EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence            998547777777778899999987655

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.99  E-value=0.0022  Score=72.32  Aligned_cols=253  Identities=11%  Similarity=0.102  Sum_probs=137.8

Q ss_pred             CCeeEEEEec-CCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          347 SSPMSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       347 ~~v~~v~~sp-dg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      .....|+|+| ++..|+++-.. +.|+.+|..+++...                    +.........++|+++|++|.+
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~--------------------~~~~~~~P~~ia~d~~G~~lyv  195 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVST--------------------VYSGLSKVRTICWTHEADSMII  195 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEE--------------------EECCCSCEEEEEECTTSSEEEE
T ss_pred             CCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEE--------------------EecCCCCcceEEEeCCCCEEEE
Confidence            4678999998 45554554443 889999998765443                    1223456889999999996666


Q ss_pred             EECC-C----eEEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEee-cCCC
Q 001311          426 AYSR-H----IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEA  498 (1102)
Q Consensus       426 ~~~d-~----~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-~h~~  498 (1102)
                      +... +    .+.+.+.. +.... ...+. .......++++| ++.  ++++-..++.|..+|..++....... +...
T Consensus       196 ad~~~~~~~~~v~~~~~~-g~~~~-~~~l~-~~~~p~giavdp~~g~--lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          196 TNDQNNNDRPNNYILTRE-SGFKV-ITELT-KGQNCNGAETHPINGE--LYFNSWNAGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             EECCSCTTSEEEEEEEGG-GTSCS-EEEEE-ECSSCCCEEECTTTCC--EEEEETTTTEEEEEETTTTEEEEEEECSSSS
T ss_pred             EeCCCCcccceEEEEeCC-Cceee-eeeec-cCCCceEEEEeCCCCE--EEEEECCCCEEEEEECCCCcEEEEEEcCCCC
Confidence            6542 2    33334433 32221 11122 123457788999 555  56666677899999988776532222 1223


Q ss_pred             CeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEcc------CCceeeeccccCceeEEEEc
Q 001311          499 PVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA------DGTRTYQGFRKRSLGVVQFD  571 (1102)
Q Consensus       499 ~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~------~~~~~~~~~~~~~i~~~~~~  571 (1102)
                      ....++|  +++++ +.++-...+.|..++.+.......      .+..++-.+      ++. .....-..+...+++.
T Consensus       271 ~P~gia~--~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~-~~~a~~~~P~~gv~v~  341 (430)
T 3tc9_A          271 WEFHIQF--HPSGNYAYIVVVNQHYILRSDYDWKTKRLT------TPYIVCGQQGAKDWVDGV-GKKARMHAPRQGTFVK  341 (430)
T ss_dssp             CCEEEEE--CTTSSEEEEEETTTTEEEEEEEETTTTEEC------CCEEEEECTTCBCCBCEE-GGGCBBSSEEEEEEEE
T ss_pred             cceeEEE--cCCCCEEEEEECCCCEEEEEeCCccccccc------ceEEEeccCCCCCCCCCC-CcceEeCCCcceEEEc
Confidence            4567887  45566 455556678899988764311110      000111000      100 0000001111134442


Q ss_pred             --------CCCCEEEEEeCCCeEEEEECCCcceEEEEcC---------CC------CCCCcCeEEEcCC-CCEEEEEECC
Q 001311          572 --------TTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA---------DG------GLPASPRIRFNKD-GCLLAVSTND  627 (1102)
Q Consensus       572 --------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---------~~------~~~~v~~~~~s~~-~~~l~~~~~d  627 (1102)
                              ++++.+++-...+.|+.++. +|........         .+      .......++++++ +.++++-..+
T Consensus       342 ~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  420 (430)
T 3tc9_A          342 NPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDREN  420 (430)
T ss_dssp             CGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             cccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCC
Confidence                    33555555556778888884 5543333221         00      0123567899984 5555555556


Q ss_pred             CcEEEEEc
Q 001311          628 NGIKILAT  635 (1102)
Q Consensus       628 g~i~iwd~  635 (1102)
                      +.|+.++.
T Consensus       421 ~rIr~i~~  428 (430)
T 3tc9_A          421 RRIRKIGY  428 (430)
T ss_dssp             TEEEEEEE
T ss_pred             CeEEEEcc
Confidence            77877765

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.96  E-value=0.0031  Score=71.10  Aligned_cols=253  Identities=12%  Similarity=0.110  Sum_probs=138.0

Q ss_pred             CCeeEEEEecC--CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          347 SSPMSMDFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       347 ~~v~~v~~spd--g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      .....|+|+|+  +..|+++-.. +.|+.+|..+++...                    +........+++|+++|++++
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~lyV  197 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMVV  197 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEEE
T ss_pred             CCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEEE
Confidence            45789999995  3434444333 899999998776653                    222345689999999999544


Q ss_pred             EEECC---Ce-EEEEEccCCceeeeEEEeeccccCEEEEEEcC-CCCeeEEEEecCCCcEEEEeCCCCeeeEEe-ec-CC
Q 001311          425 VAYSR---HI-VQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH-PNKQLCVITCGDDKTIKVWDATNGAKQYIF-EG-HE  497 (1102)
Q Consensus       425 s~~~d---~~-v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~-d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~-~~-h~  497 (1102)
                      +....   .. +...+...+.....  .+. .-.....+++.+ ++.  ++++-..++.|+.+|..++.....+ .. ..
T Consensus       198 ad~~~~~~~~gv~~~~~~~~~~~~~--~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~  272 (433)
T 4hw6_A          198 VDDQSSDTNTGIYLFTRASGFTERL--SLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDTK  272 (433)
T ss_dssp             EECCSCTTSEEEEEECGGGTTCCEE--EEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSCC
T ss_pred             EcCCCCcccceEEEEECCCCeeccc--ccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCCC
Confidence            44321   22 33334333221111  121 234456788999 565  5566667788999998878763333 21 12


Q ss_pred             CCeEEEeeeecCCcc-EEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEc--cCCce--eeeccccCceeEEEE--
Q 001311          498 APVYSVCPHHKENIQ-FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYS--ADGTR--TYQGFRKRSLGVVQF--  570 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s--~~~~~--~~~~~~~~~i~~~~~--  570 (1102)
                      ..-..++|  +++++ +.++-...+.|+.++++.......      .+..++-.  ..|..  ......-.....+++  
T Consensus       273 ~~~~~ia~--dpdG~~LYvad~~~~~I~~~~~d~~~~~~~------~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~  344 (433)
T 4hw6_A          273 GSNFHIVW--HPTGDWAYIIYNGKHCIYRVDYNRETGKLA------VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVK  344 (433)
T ss_dssp             SSCEEEEE--CTTSSEEEEEETTTTEEEEEEBCTTTCCBC------CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEE
T ss_pred             CCcccEEE--eCCCCEEEEEeCCCCEEEEEeCCCCCcccC------cEEEEEecCCCCccCCCcccceEEcCCccEEEEc
Confidence            22345776  45556 445555678899988763211100      00001100  00000  000001112344666  


Q ss_pred             -------cCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCC----------------CCCcCeEEEc-CCCCEEEEEEC
Q 001311          571 -------DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----------------LPASPRIRFN-KDGCLLAVSTN  626 (1102)
Q Consensus       571 -------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v~~~~~s-~~~~~l~~~~~  626 (1102)
                             ..+++++++-...+.|+.++. +|. +.++.+.+.                ......++++ +++.++++-..
T Consensus       345 n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~-v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~  422 (433)
T 4hw6_A          345 NEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR-VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD  422 (433)
T ss_dssp             CGGGTTSSCCEEEEEEETTTTEEEEECT-TSE-EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             cccccccCCCCcEEEEECCCCEEEEECC-CCC-EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence                   566666666667788999885 554 333332211                1224578888 56665555555


Q ss_pred             CCcEEEEEc
Q 001311          627 DNGIKILAT  635 (1102)
Q Consensus       627 dg~i~iwd~  635 (1102)
                      ++.|+.+++
T Consensus       423 n~rIr~i~~  431 (433)
T 4hw6_A          423 NHRVRKIAP  431 (433)
T ss_dssp             GTEEEEEEE
T ss_pred             CCEEEEEec
Confidence            677777765

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.93  E-value=0.095  Score=64.21  Aligned_cols=496  Identities=11%  Similarity=0.046  Sum_probs=246.8

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA  426 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~  426 (1102)
                      ..|.++.. .+|.  |-.|+.+ -+..+|..+++......             .  ...-....|.++....+|.+.+ |
T Consensus       103 ~~i~~i~~-~~g~--lWigt~~-Gl~~~~~~~~~~~~~~~-------------~--~~~l~~~~i~~i~~d~~g~lWi-g  162 (758)
T 3ott_A          103 TDVRTMAL-QGDT--LWLGALN-GLYTYQLQSRKLTSFDT-------------R--RNGLPNNTIYSIIRTKDNQIYV-G  162 (758)
T ss_dssp             SCEEEEEE-ETTE--EEEEETT-EEEEEETTTCCEEEECH-------------H--HHCCSCSCEEEEEECTTCCEEE-E
T ss_pred             ceEEEEEe-cCCc--EEEEcCC-cceeEeCCCCeEEEecc-------------C--CCCcCCCeEEEEEEcCCCCEEE-E
Confidence            35777765 4665  4444544 67888987655432100             0  0011234688998888888766 4


Q ss_pred             ECCCeEEEEEccCCceeeeEEEeecc----ccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311          427 YSRHIVQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS  502 (1102)
Q Consensus       427 ~~d~~v~vwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~  502 (1102)
                      +.+ -+..++..+++... . .+...    ...|.++....++..+.+  |.. +-+..+|..+++......-....|.+
T Consensus       163 t~~-Gl~~~~~~~~~~~~-~-~~~~~~~~~~~~i~~i~~d~~~~~lWi--gt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~  236 (758)
T 3ott_A          163 TYN-GLCRYIPSNGKFEG-I-PLPVHSSQSNLFVNSLLEDTTRQCVWI--GTE-GYLFQYFPSTGQIKQTEAFHNNSIKS  236 (758)
T ss_dssp             ETT-EEEEEETTTTEEEE-E-CCCCCTTCSSCCEEEEEEETTTTEEEE--EEE-EEEEEEETTTTEEEEEEEEEEEEEEE
T ss_pred             eCC-CHhhCccCCCceEE-e-cCCCccccccceeEEEEEECCCCEEEE--EEC-CCCeEEcCCCCeEEeccCCCCCeEEE
Confidence            444 47788877654221 1 11111    224888888777663233  333 45888998777543221112234666


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      +..  +.+|. |..|+. +-+.+++..+.... .+.....          .   ..+.....+.++..+.+|+ |-.|+.
T Consensus       237 i~~--d~~g~-lWigT~-~Gl~~~~~~~~~~~-~~~~~~~----------~---~~~l~~~~i~~i~~D~~g~-lWiGT~  297 (758)
T 3ott_A          237 LAL--DGNGD-LLAGTD-NGLYVYHNDTTPLQ-HIIHDSR----------N---IQSLTNNIIWNIFADQEHN-IWLGTD  297 (758)
T ss_dssp             EEE--CTTCC-EEEEET-TEEEEECCTTSCCE-EECCCTT----------C---TTSCSCSCEEEEEECTTCC-EEEEES
T ss_pred             EEE--cCCCC-EEEEeC-CceeEEecCCCcEE-EEEcCCC----------C---cCcCCcCeEEEEEEcCCCC-EEEEeC
Confidence            653  45554 444554 45777776553321 1110000          0   0001122355555555555 444445


Q ss_pred             CCeEEEEECCCcceEEEEc-----CCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc-ceeecccccccccccC
Q 001311          583 DFSIKFWDMDSVQLLTSID-----ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR-LLRTFENLAYDASRTS  656 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~-----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~  656 (1102)
                      .| +.++... .. ...+.     .......|.++....+|.+.+. +.+| +..++..++.. .+..+.          
T Consensus       298 ~G-l~~~~~~-~~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~~~~~~~~----------  362 (758)
T 3ott_A          298 YG-ISLSRYN-SA-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGERHDAIWYR----------  362 (758)
T ss_dssp             SS-EEEECCC-C--CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSCCCCEEEC----------
T ss_pred             Cc-ccccccC-Cc-eeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeecccccccceeEEec----------
Confidence            56 5444322 21 11111     0111234777777777776654 4544 55555433210 000000          


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311          657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  736 (1102)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  736 (1102)
                                                                                    ...     ...      .
T Consensus       363 --------------------------------------------------------------~~~-----~~~------~  369 (758)
T 3ott_A          363 --------------------------------------------------------------MGD-----KTY------P  369 (758)
T ss_dssp             --------------------------------------------------------------TTC-----SSS------C
T ss_pred             --------------------------------------------------------------cCC-----cCC------C
Confidence                                                                          000     000      0


Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEec
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSK  816 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~  816 (1102)
                      .....|.++....+|+..+ ++. +-+..|+..+..+.            .+....       .........|.++....
T Consensus       370 l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~~------------~~~~~~-------~~~~~~~~~v~~i~~d~  428 (758)
T 3ott_A          370 LSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQFI------------HYNIVD-------NTGTYNTNWTYYIFEDT  428 (758)
T ss_dssp             CSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEEE------------EEEEEC-------CC--CBSSSEEEEEECT
T ss_pred             CCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcEE------------EeecCC-------CcCCCCCceEEEEEEcC
Confidence            0224577888888887444 443 45666665322110            000000       00000234578888888


Q ss_pred             CCCeEEEEeCCeEEEEEcCCC-----cee---eeec---C-CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          817 NDSYVMSASGGKISLFNMMTF-----KTM---ATFM---P-PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       817 d~~~las~sdg~I~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      +|++.+....+.|.++|..+.     ...   ..+.   + ....|.++...+ ++++.+.++..+-|..+|..+++...
T Consensus       429 ~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~~d~~~~~~~~  507 (758)
T 3ott_A          429 AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDKINPRTREVTK  507 (758)
T ss_dssp             TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEEEETTTTEEEE
T ss_pred             CCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEEEeCCCCceEE
Confidence            877655444667888886531     111   1111   1 123588898888 77766533444558888987765443


Q ss_pred             eecc---ccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCC
Q 001311          885 KLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET  961 (1102)
Q Consensus       885 ~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~  961 (1102)
                      ....   ....+.++....+|.+.+.. ..| +..++..+.+....   . ..+  .....|.++... +|.+.+++ ++
T Consensus       508 ~~~~~~~~~~~~~~i~~d~~g~lWigt-~~G-l~~~~~~~~~~~~~---~-~~g--l~~~~i~~i~~~-~g~lWi~t-~~  577 (758)
T 3ott_A          508 LFADELTGEKSPNYLLCDEDGLLWVGF-HGG-VMRINPKDESQQSI---S-FGS--FSNNEILSMTCV-KNSIWVST-TN  577 (758)
T ss_dssp             ECTTTSCGGGCEEEEEECTTSCEEEEE-TTE-EEEECC--CCCCBC---C-CCC-----CCEEEEEEE-TTEEEEEE-SS
T ss_pred             ecCCCcCCCcccceEEECCCCCEEEEe-cCc-eEEEecCCCceEEe---c-ccC--CCccceEEEEEC-CCCEEEEC-CC
Confidence            2211   13457788887788776644 455 88888766443211   1 011  112356777664 66554444 55


Q ss_pred             eEEEEEcCCceEeeeeccCCCCCCeeEEEEc-CCCcEEEEEeCCCeEEEEEc
Q 001311          962 QLAIFETTKLECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus       962 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
                      .|..||..+.+.... ...  ...+....+. +||. |..|+.+|.+++ +.
T Consensus       578 Gl~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~G~-l~fG~~~Gl~~f-~p  624 (758)
T 3ott_A          578 GLWIIDRKTMDARQQ-NMT--NKRFTSLLFDPKEDC-VYLGGADGFGIS-HS  624 (758)
T ss_dssp             CEEEEETTTCCEEEC---C--CCCCSEEEEETTTTE-EEEECBSEEEEE-EC
T ss_pred             CeEEEcCCCceeEEe-cCC--CCceeeeEEECCCCc-EEEecCCceEEE-Ch
Confidence            688889887765432 111  2233344443 4665 555677775544 44

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.89  E-value=0.0086  Score=66.81  Aligned_cols=226  Identities=11%  Similarity=0.021  Sum_probs=128.7

Q ss_pred             CeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECCCeEEEEEccCCceee-eE
Q 001311          369 GDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHGGDEVR-QH  446 (1102)
Q Consensus       369 ~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~vwd~~~~~~~~-~~  446 (1102)
                      ..|+..++.......                    +......+..|+|++.+..|... ...+.|..+++.+..... ..
T Consensus        92 ~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~  151 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD  151 (400)
T ss_dssp             TEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE
T ss_pred             ceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce
Confidence            788888887654332                    12234578999999966666555 456889999987632100 01


Q ss_pred             EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CCeEEE
Q 001311          447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKA  525 (1102)
Q Consensus       447 ~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~i~~  525 (1102)
                      ..+.........+++.+.+.. ++++-...+.|.+.++........+.........+++.+. ++.+.++-.. .+.|..
T Consensus       152 ~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~-~g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          152 TVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETT-TTEEEEEECSSSCCEEE
T ss_pred             EEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecc-cCeEEEEeCCCCCEEEE
Confidence            112223456788999886554 5666667789999998765544444444455677887543 3334444322 367777


Q ss_pred             EEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCC
Q 001311          526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADG  604 (1102)
Q Consensus       526 wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~  604 (1102)
                      .+++..............                     ...+++++++..|+.+. ..+.|..+|++............
T Consensus       230 ~~~dG~~~~~~~~~~l~~---------------------P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~  288 (400)
T 3p5b_L          230 GGLNGVDIYSLVTENIQW---------------------PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEK  288 (400)
T ss_dssp             EETTSCSCEEEECSSCSC---------------------EEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSS
T ss_pred             EeCCCCccEEEEECCCCc---------------------eEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCC
Confidence            776643322222222223                     33455555545565554 56789999986544433333222


Q ss_pred             CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          605 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       605 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ......++++. .+..+.+-...+.|..++..++
T Consensus       289 ~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G  321 (400)
T 3p5b_L          289 RLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTG  321 (400)
T ss_dssp             TTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSC
T ss_pred             CCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCC
Confidence            22234466663 3344445556678888887676

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.87  E-value=0.0035  Score=70.61  Aligned_cols=254  Identities=7%  Similarity=0.002  Sum_probs=140.7

Q ss_pred             ceEEEEEcc-CCceEEEeec-CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE----
Q 001311          741 KISRLIFTN-SGNAILALAS-NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL----  814 (1102)
Q Consensus       741 ~i~~~~~s~-~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~----  814 (1102)
                      ....++|+| +...|+++.. .+.|++.|+                      .++.+....-.+.........++|    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~----------------------~~~~v~~l~~~~~~~~~~p~~ia~~~~~  197 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDL----------------------KNRMLSSPLNINTIPTNRIRSIAFNKKI  197 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEET----------------------TTTEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEEC----------------------CCCEEEEEEccCccccCCCcEEEEeecc
Confidence            467889998 3444555544 355665554                      232222211111112345889999    


Q ss_pred             ---ecCCCeEEEEe-CC-------eEEEEEcCC-Ccee-----eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          815 ---SKNDSYVMSAS-GG-------KISLFNMMT-FKTM-----ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       815 ---s~d~~~las~s-dg-------~I~iwd~~~-~~~~-----~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                         ++++++|+++. .+       .|.+++... +...     ..+.. -.....++++|+++.++++-..++.|+.+|+
T Consensus       198 ~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~  276 (496)
T 3kya_A          198 EGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDL  276 (496)
T ss_dssp             TTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECH
T ss_pred             cccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEec
Confidence               99999777776 32       266666443 2221     12211 1235678899966777777778889999999


Q ss_pred             e-------ccee-----------eeee-c-cccccceeEEEecCCCEE-EEEcCCCcEEEEEcCCC--cccceeee-ec-
Q 001311          878 R-------VDEV-----------KSKL-K-GHSKRITGLAFSHALNVL-VSSGADSQLCVWSSDGW--EKQKNRFL-QI-  932 (1102)
Q Consensus       878 ~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~d~~~l-~s~s~Dg~i~vwd~~~~--~~~~~~~~-~~-  932 (1102)
                      .       ++..           ...+ . +....-..|+|+|+|++| ++-.....|+.++....  .......+ -. 
T Consensus       277 ~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~  356 (496)
T 3kya_A          277 VDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGY  356 (496)
T ss_dssp             HHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBT
T ss_pred             ccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCC
Confidence            7       4543           1121 1 122345789999999954 44456678888765432  11000111 11 


Q ss_pred             -CCCCCC------CCCCCc-EEEEc-------cCCcEEEE-EeCCeEEEEEcCCceEeeeeccC------------C---
Q 001311          933 -PTGRTP------TAQSDT-RVQFH-------QDQIHFLV-VHETQLAIFETTKLECVKQWVPR------------E---  981 (1102)
Q Consensus       933 -~~~~~~------~~~~v~-~~~~s-------pdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~------------~---  981 (1102)
                       ..+...      .-.... .++..       ++|.+.++ ..+..|+.++ .+|.. .++...            +   
T Consensus       357 g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~d  434 (496)
T 3kya_A          357 KQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTDD  434 (496)
T ss_dssp             TBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCCC
T ss_pred             CCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccCC
Confidence             011100      001223 44444       45666555 4678999998 45543 333211            1   


Q ss_pred             -------CCCCeeEEEEcCC-CcEEEEEeCCCeEEEEEcCCceeEE
Q 001311          982 -------SSAPITHATFSCD-SQLVYACFLDATVCVFSAANLKLRC 1019 (1102)
Q Consensus       982 -------h~~~v~~l~~spd-~~~l~s~s~Dg~I~vwd~~~~~~~~ 1019 (1102)
                             .-.....|+++++ |.++++=.....||.++++......
T Consensus       435 G~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~~  480 (496)
T 3kya_A          435 GDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENVA  480 (496)
T ss_dssp             EETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC---
T ss_pred             CCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCcccc
Confidence                   1134778999997 7666666667889999887765553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.84  E-value=0.005  Score=66.19  Aligned_cols=204  Identities=7%  Similarity=-0.032  Sum_probs=130.5

Q ss_pred             CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCcee-eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM-ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~-~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      .+.+++|++.+..|....  .+.|..+++...... ..+.........+++.+.+++++++-...+.|.++++.......
T Consensus        36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  115 (318)
T 3sov_A           36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV  115 (318)
T ss_dssp             EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence            356888998766666665  688999998765422 22222234577899997456666666677899999986433222


Q ss_pred             eeccccccceeEEEecCCCEEEEEc--CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eC
Q 001311          885 KLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HE  960 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d  960 (1102)
                      .+........+|++.|.+..|..+.  ..+.|...++++...  .....  .+.    .....+++++++..|..+  ..
T Consensus       116 l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~--~~l----~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          116 LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR--FIIIN--SEI----YWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC--EEEEC--SSC----SCEEEEEEETTTTEEEEEETTT
T ss_pred             EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe--EEEEE--CCC----CCccEEEEeccCCEEEEEECCC
Confidence            2223344567899998766666554  256788888775322  11111  111    234789999987777664  56


Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +.|..+|...... ..+.. +.......+++.. +.++++-...+.|..++..+|+....+.
T Consensus       188 ~~I~~~d~dG~~~-~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          188 NFIHKSNLDGTNR-QAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TEEEEEETTSCSC-EEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CEEEEEcCCCCce-EEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence            7899999875332 22221 2345677888853 4455566667899999998888766654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.84  E-value=0.00016  Score=87.17  Aligned_cols=207  Identities=6%  Similarity=-0.046  Sum_probs=127.3

Q ss_pred             CCeeEEEEecCCCeEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc
Q 001311          807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD  880 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~  880 (1102)
                      ..+..++|++.+..|..+.  .+.|+.+++.+    ......+.........|++.+.+++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3467889999887777775  57899999875    22222222222345678888645666666566789999998754


Q ss_pred             eeeeeeccccccceeEEEecCCCEEEEEcC-C-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311          881 EVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  958 (1102)
Q Consensus       881 ~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  958 (1102)
                      .....+.........|++.|++.+|+.+.. . +.|.++++.+...  ..+.. ...     .....++|+|++..|..+
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~-~~l-----~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT-ENI-----QWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--CEESC-SSC-----SSCCCEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--eEEEe-CCC-----CCccEEEEeccCCEEEEE
Confidence            433333322345678999987665554443 2 6788877765321  11111 111     245789999987766664


Q ss_pred             --eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          959 --HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       959 --~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                        ..+.|..+++........+...........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus       558 D~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence              567899999875433222221122234556666544 455555667899999999998887765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.82  E-value=0.0074  Score=73.07  Aligned_cols=208  Identities=7%  Similarity=-0.041  Sum_probs=130.1

Q ss_pred             CCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCC----ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          806 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTF----KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~----~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      ...+..+++++....|....  .+.|+.+++...    .....+.........|++.+.+++++++-...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            44578899998766666665  578999998753    223334334456788999984556666666778999999875


Q ss_pred             ceeeeeeccccccceeEEEecCCCEEEEEcC-C-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-D-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      ......+........+|++.|.+.+|..+.. + +.|.+.++++....  .++   ....   .....|++++.+..|..
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~--~lv---~~~l---~~P~GLavD~~~~~LYw  574 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY--SLV---TENI---QWPNGITLDLLSGRLYW  574 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE--EEE---CSSC---SCEEEEEEETTTTEEEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE--EEE---eCCC---CCceEEEEecCCCeEEE
Confidence            4433333333445789999998666665543 2 67888888764321  111   1111   24588999987777776


Q ss_pred             E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          958 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       958 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +  ....|..+++........+...+.-.....|++..+ +++++-...+.|...|..+|+.+..+.
T Consensus       575 aD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          575 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEee
Confidence            5  556899999876544333332222345567777433 444555566889888887886655553

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.71  E-value=0.013  Score=63.02  Aligned_cols=210  Identities=11%  Similarity=-0.002  Sum_probs=123.0

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE-E
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF-G  424 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l-a  424 (1102)
                      ...+.+++|++.+..|+.+-...+.|..++...+.....                  ++...-.....+++.+.+..| +
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~------------------~~~~~l~~p~glavd~~~g~ly~   95 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN------------------VVVSGLLSPDGLACDWLGEKLYW   95 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE------------------EEEECCSCCCEEEEETTTTEEEE
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE------------------EEcCCCCCccEEEEEcCCCeEEE
Confidence            346789999998777777777788999999876531100                  111112356789999855544 5


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCeeeEEe-ecCCCCeEE
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIF-EGHEAPVYS  502 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd~~~~~~~~~~-~~h~~~v~~  502 (1102)
                      +-...+.|.+++.++..... .  +.........+++.|.+.. ++++- +..+.|...++. |.....+ ...-..-+.
T Consensus        96 ~d~~~~~I~~~~~dG~~~~~-l--~~~~~~~P~giavdp~~g~-ly~td~~~~~~I~r~~~d-G~~~~~~~~~~l~~Png  170 (318)
T 3sov_A           96 TDSETNRIEVSNLDGSLRKV-L--FWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMD-GSSRFIIINSEIYWPNG  170 (318)
T ss_dssp             EETTTTEEEEEETTSCSCEE-E--ECSSCSSEEEEEEEGGGTE-EEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEE
T ss_pred             EECCCCEEEEEECCCCcEEE-E--EeCCCCCccEEEEeCCCCE-EEEEecCCCCEEEEEEcC-CCCeEEEEECCCCCccE
Confidence            55567889999987653221 1  2234456789999987664 33333 345788888865 3333333 223345677


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      +++++. ++.+.++-+..+.|..+|++................                     .+++.. +..+.+-..
T Consensus       171 lavd~~-~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~---------------------glav~~-~~lywtd~~  227 (318)
T 3sov_A          171 LTLDYE-EQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPF---------------------ALTLFE-DILYWTDWS  227 (318)
T ss_dssp             EEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEE---------------------EEEEET-TEEEEEETT
T ss_pred             EEEecc-CCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCce---------------------EEEEeC-CEEEEEecC
Confidence            887543 334445555678898888875332222211112222                     233321 223444445


Q ss_pred             CCeEEEEECCCcceEEEEc
Q 001311          583 DFSIKFWDMDSVQLLTSID  601 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~  601 (1102)
                      .+.|..++..+|+....+.
T Consensus       228 ~~~V~~~~~~~G~~~~~i~  246 (318)
T 3sov_A          228 THSILACNKYTGEGLREIH  246 (318)
T ss_dssp             TTEEEEEETTTCCSCEEEE
T ss_pred             CCeEEEEECCCCCceEEEe
Confidence            6788888887776555543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.61  E-value=0.024  Score=68.58  Aligned_cols=206  Identities=11%  Similarity=-0.019  Sum_probs=115.7

Q ss_pred             CCCeEEEEEccCCCeEE-EEECCCeEEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCC
Q 001311          408 GVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT  485 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~la-s~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~  485 (1102)
                      ...+..|+|.+.+..|. +-...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++.
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~ld  501 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTK  501 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeCC
Confidence            45778999999655555 4455678999998763210 011123324456778999988865 56666778899999977


Q ss_pred             CCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311          486 NGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  564 (1102)
Q Consensus       486 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  564 (1102)
                      .......+.........|++.+. .+.+.++-.. .+.|...+++.......+.....                     .
T Consensus       502 G~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~---------------------~  559 (791)
T 3m0c_C          502 GVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ---------------------W  559 (791)
T ss_dssp             SSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCS---------------------C
T ss_pred             CCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCC---------------------C
Confidence            54443334444455778887543 2333344322 26777777664332222222222                     3


Q ss_pred             eeEEEEcCCCCEEEEEe-CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCC
Q 001311          565 LGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDG  638 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~  638 (1102)
                      ...|++++.+..|+.+. ..+.|...++........+..........+|++  ++..|+... ..+.|...+..++
T Consensus       560 P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG  633 (791)
T 3m0c_C          560 PNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTG  633 (791)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTC
T ss_pred             ceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCC
Confidence            34455555445565554 467889999865544444433222223345555  334555444 4577777777666

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.58  E-value=0.012  Score=62.56  Aligned_cols=190  Identities=12%  Similarity=0.133  Sum_probs=117.6

Q ss_pred             CcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecC----CC---EEE-EEcC--CCcEEEEEcCCCcccceee
Q 001311          860 NNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHA----LN---VLV-SSGA--DSQLCVWSSDGWEKQKNRF  929 (1102)
Q Consensus       860 ~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d----~~---~l~-s~s~--Dg~i~vwd~~~~~~~~~~~  929 (1102)
                      ..+++.....+-+.+||+ +|+.++.+..  +.+..+..-|+    |+   +++ +.-.  +++|.+|+++.....    
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~----  112 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT----  112 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC----
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc----
Confidence            345555566788999999 7888888764  55666666553    22   223 3333  578999988532111    


Q ss_pred             eecCCCC--C--CCCCCCcEEEE--ccC-Cc-EEEE-EeCCeEEEEEc-------CCceEeeeeccCCCCCCeeEEEEcC
Q 001311          930 LQIPTGR--T--PTAQSDTRVQF--HQD-QI-HFLV-VHETQLAIFET-------TKLECVKQWVPRESSAPITHATFSC  993 (1102)
Q Consensus       930 ~~~~~~~--~--~~~~~v~~~~~--spd-g~-~l~~-~~d~~i~iwd~-------~~~~~~~~~~~~~h~~~v~~l~~sp  993 (1102)
                      +......  .  .....+..+++  ++. ++ ++++ ..++.+..|++       .+.+.++.+..   .+.+-.+...+
T Consensus       113 l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd  189 (355)
T 3amr_A          113 LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADD  189 (355)
T ss_dssp             EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEET
T ss_pred             eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcC
Confidence            1111100  0  00135677888  774 54 4555 47899999988       34567777765   45788999999


Q ss_pred             CCcEEEEEeCCCeEEEEEcC-----CceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEe-cCCcEEEEecc
Q 001311          994 DSQLVYACFLDATVCVFSAA-----NLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGL-SDGGVHVFEPL 1066 (1102)
Q Consensus       994 d~~~l~s~s~Dg~I~vwd~~-----~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~-~Dg~v~vW~~~ 1066 (1102)
                      ....|+.+-+|.-|..++.+     +++++..+.      .++-...+.-+.+-..+ ++. +|++.+ .++++.|||..
T Consensus       190 ~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~------~g~l~aDvEGLai~~~~-~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          190 EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD------GRHLTRDIEGLTIYYAA-DGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS------SSSBCSCEEEEEEEECG-GGCEEEEEEEGGGTEEEEEESS
T ss_pred             CCCeEEEecccceEEEEeCCcCCCCCceEEEEec------CCccccCcceEEEEecC-CCCEEEEEEcCCCCEEEEEECC
Confidence            99999999999777777755     455665553      12112224423343344 334 555555 67899999996

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.51  E-value=0.018  Score=60.49  Aligned_cols=204  Identities=11%  Similarity=0.073  Sum_probs=124.5

Q ss_pred             CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeee-ecC----CCC--CeeEEEE---ecCCCcEEEEEeC------
Q 001311          807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMAT-FMP----PPP--AATFLAF---HPQDNNIIAIGMD------  868 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~-~~~----~~~--~i~~l~~---sp~d~~~lasg~~------  868 (1102)
                      ....+++|.+....+..++  .++|..|+...+..... +.+    ...  .+..|.|   .| +++++++...      
T Consensus        13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCT
T ss_pred             cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccccc
Confidence            3456789988666666665  89999999976544333 322    111  3578999   68 6888886542      


Q ss_pred             -------CCcEEEEEee---cceeeeeec--ccc-----------ccceeEEEecCCCEEEEEcCC-CcEEEEEcCCCcc
Q 001311          869 -------DSSIQIYNVR---VDEVKSKLK--GHS-----------KRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEK  924 (1102)
Q Consensus       869 -------dg~v~vwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~  924 (1102)
                             +..|..||+.   +++.+....  ...           .....|+..++|+..++++.- +.|...+.+....
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~  171 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTV  171 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCE
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEE
Confidence                   6789999998   776654432  211           247789999999999988877 7776666654321


Q ss_pred             cceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceE--eeeeccCC--CCCCeeEE-EEcCCCcE-
Q 001311          925 QKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLEC--VKQWVPRE--SSAPITHA-TFSCDSQL-  997 (1102)
Q Consensus       925 ~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~--h~~~v~~l-~~spd~~~-  997 (1102)
                       ....+.....  ........++++|||+.|++. ..+.|..+|+.+...  +..-....  .-.....| ..-.+|+. 
T Consensus       172 -~~~~~~~~~~--~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl  248 (334)
T 2p9w_A          172 -STFAWESGNG--GQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV  248 (334)
T ss_dssp             -EEEEECCCCS--SSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred             -eeeeecCCCc--ccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence             1111111111  111346799999999988885 588999999884322  11110001  11223333 33347777 


Q ss_pred             EEEEeCCCeEEEEEcCC
Q 001311          998 VYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       998 l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      |++.+..+.+.+.+-+.
T Consensus       249 lV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          249 LVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEETTEEEEEECSST
T ss_pred             EEEcCCCCEEEEECCCC
Confidence            55555566666655443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.47  E-value=0.047  Score=59.53  Aligned_cols=230  Identities=12%  Similarity=0.111  Sum_probs=125.3

Q ss_pred             CCeeEEEEecCCCeEEEEeCCeEEEEEcCCCc-eeeeec---CCCCCeeEEEEecC---CCcEEEEEeC---C----CcE
Q 001311          807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFK-TMATFM---PPPPAATFLAFHPQ---DNNIIAIGMD---D----SSI  872 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~-~~~~~~---~~~~~i~~l~~sp~---d~~~lasg~~---d----g~v  872 (1102)
                      .....++|.|||+++++-.+|.|++++. +++ .+..+.   ........|+|+|+   ++.+.++-..   +    ..|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            3478999999998776666899999973 444 222221   12346889999993   2444444332   3    567


Q ss_pred             EEEEeecc-------ee-eeeecc-ccccceeEEEecCCCEEEEEcCC-------------CcEEEEEcCCCccc-----
Q 001311          873 QIYNVRVD-------EV-KSKLKG-HSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQ-----  925 (1102)
Q Consensus       873 ~vwd~~~~-------~~-~~~l~~-h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~~~-----  925 (1102)
                      ..|+....       +. +..+.. .......|+|.|||.+.++.+..             +.|.-++.+..-..     
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~  187 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFP  187 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSST
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCC
Confidence            77776543       11 111221 11124679999999887775432             34444444331000     


Q ss_pred             ceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEEE--eCC--eEEEEEcCCce------------------EeeeeccCCC
Q 001311          926 KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HET--QLAIFETTKLE------------------CVKQWVPRES  982 (1102)
Q Consensus       926 ~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~--~d~--~i~iwd~~~~~------------------~~~~~~~~~h  982 (1102)
                      .....  ..++    .....++|+| +|.+.++-  .+.  .|.+.  ..+.                  .+..+.  ..
T Consensus       188 ~~~i~--a~G~----rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~~p~~~~~--~~  257 (354)
T 3a9g_A          188 NSPIW--SYGH----RNPQGIDWHRASGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFVDPVIDTG--SE  257 (354)
T ss_dssp             TCCEE--EECC----SCCCEEEECTTTCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSCCCSEECT--TC
T ss_pred             CCcEE--EEcc----CCcceEEEeCCCCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCcCCEeecC--CC
Confidence            00111  1122    1457899999 67766662  222  23332  2222                  111110  11


Q ss_pred             CCCeeEEEEc-------CCCcEEEEEeCCCeEEEEEcCCc-eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE
Q 001311          983 SAPITHATFS-------CDSQLVYACFLDATVCVFSAANL-KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1054 (1102)
Q Consensus       983 ~~~v~~l~~s-------pd~~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~ 1054 (1102)
                      ...+..++|.       .+|.++++.-..+.|...+++.. +......   ++..    ..-.+..+++.| ||.+.++.
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv~~  329 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILIST  329 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEEEE
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEEEE
Confidence            3467888883       57777777767788888888753 3321111   1111    113456899998 57766665


Q ss_pred             e
Q 001311         1055 L 1055 (1102)
Q Consensus      1055 ~ 1055 (1102)
                      .
T Consensus       330 ~  330 (354)
T 3a9g_A          330 S  330 (354)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.36  E-value=0.00087  Score=80.73  Aligned_cols=222  Identities=7%  Similarity=-0.100  Sum_probs=120.6

Q ss_pred             eeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       340 ~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      ..+......+.+|+|++++..|+++-...+.|..+++.+......               ...++.........|++.+.
T Consensus       399 ~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~---------------~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          399 TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CC---------------CCCBCCSCC--CCCEECCCS
T ss_pred             eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcc---------------eEEEEeCCCCCcceEEEEee
Confidence            333444567889999998887677666678899999875110000               00011111234567888865


Q ss_pred             CC-eEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEe-cCCCcEEEEeCCCCeeeEEeecCC
Q 001311          420 GS-LFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC-GDDKTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       420 g~-~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~-~~d~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      +. ++++-...+.|.++++.+..... +  +.........|++.|++.. ++++- +..+.|.+.++........+....
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~-l--~~~~~~~P~giavDp~~g~-ly~td~~~~~~I~~~~~dG~~~~~l~~~~l  539 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKT-L--FREQGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNGVDIYSLVTENI  539 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEE-E--CCCSSCCCCCEECCSSSSC-CEECCCSSSCCEEBCCSSSCCCCEESCSSC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEE-E--EeCCCCCcceEEEccCCCc-EEEcccCCCCeEEEEeCCCCCeeEEEeCCC
Confidence            44 44444566889999987654222 1  2222345678899997765 33333 223678888765332222222223


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEE
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF  577 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l  577 (1102)
                      ...+.|+|.+.. +.+.++-+..+.|..++++.......+.....                   ......+++..+ ..+
T Consensus       540 ~~PnGlavd~~~-~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~-------------------~~~P~glavd~~-~ly  598 (699)
T 1n7d_A          540 QWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKR-------------------LAHPFSLAVFED-KVF  598 (699)
T ss_dssp             SSCCCEEECTTT-CCEEEEETTTTEEEEECSSSSCCEEECCCSSS-------------------CSSCCCCEEETT-EEE
T ss_pred             CCccEEEEeccC-CEEEEEecCCCeEEEEccCCCceEEEEecCCc-------------------CCCceEeEEECC-EEE
Confidence            345567775432 34555556678898888864322221111000                   001111222222 234


Q ss_pred             EEEeCCCeEEEEECCCcceEEEEc
Q 001311          578 LAAGDDFSIKFWDMDSVQLLTSID  601 (1102)
Q Consensus       578 ~~~~~dg~i~iwd~~~~~~~~~~~  601 (1102)
                      ++....+.|..++..+++.+..+.
T Consensus       599 wtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          599 WTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             EECSTTTCEEEEETTTEEEEECCC
T ss_pred             EEeCCCCeEEEEEccCCCceEEee
Confidence            444567889999988887776654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.34  E-value=0.032  Score=60.93  Aligned_cols=229  Identities=12%  Similarity=0.100  Sum_probs=120.2

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCce--eeeec---CCCCCeeEEEEecCC----CcEEEEEeCC-----CcEE
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKT--MATFM---PPPPAATFLAFHPQD----NNIIAIGMDD-----SSIQ  873 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~--~~~~~---~~~~~i~~l~~sp~d----~~~lasg~~d-----g~v~  873 (1102)
                      ....++|.|||+++++-.+|.|++++  +++.  +..+.   ........|+|+| +    +.+.++-..+     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence            46799999999976665589999998  3332  22221   1235688999999 5    4444443332     6788


Q ss_pred             EEEeecce------eeeeec---cccccceeEEEecCCCEEEEEcCC-------------CcEEEEEcCCCccc------
Q 001311          874 IYNVRVDE------VKSKLK---GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWEKQ------  925 (1102)
Q Consensus       874 vwd~~~~~------~~~~l~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~~~------  925 (1102)
                      .|+...+.      .+..+.   +.......|+|.|||.+.++.+..             +.|.-++.+..-..      
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            88876431      122232   111123689999999877765432             34554554431000      


Q ss_pred             ----ceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEEE-eCCeE------EEEEcCCceE------------------ee
Q 001311          926 ----KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV-HETQL------AIFETTKLEC------------------VK  975 (1102)
Q Consensus       926 ----~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~-~d~~i------~iwd~~~~~~------------------~~  975 (1102)
                          .....  ..++    .....++|+| +|.+.++- ....+      +|.-+..+.-                  +.
T Consensus       189 ~~~~~~~i~--a~G~----rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~  262 (352)
T 2ism_A          189 RRGARPEVY--SLGH----RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY  262 (352)
T ss_dssp             CTTSCTTEE--EECC----SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred             CCCCCccEE--EEcC----CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence                00000  0111    1346789999 67766662 22221      2333333320                  11


Q ss_pred             eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEE-EeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE
Q 001311          976 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC-RINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG 1054 (1102)
Q Consensus       976 ~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~-~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~ 1054 (1102)
                      .+   .+......++| .+|.++++.-..+.|...+++...... ......++..     .-.+..+++.| ||.++++.
T Consensus       263 ~~---~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~  332 (352)
T 2ism_A          263 FW---PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT  332 (352)
T ss_dssp             EC---TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred             ec---CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence            11   12335677888 467776666666778777776443110 0000011111     12456888988 56666655


Q ss_pred             e
Q 001311         1055 L 1055 (1102)
Q Consensus      1055 ~ 1055 (1102)
                      .
T Consensus       333 ~  333 (352)
T 2ism_A          333 S  333 (352)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.33  E-value=0.26  Score=53.24  Aligned_cols=248  Identities=8%  Similarity=0.077  Sum_probs=152.6

Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311          351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  430 (1102)
Q Consensus       351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  430 (1102)
                      +.-.+|..+- +|-=. ..++.|+|+++.+++....+                    ...|..=.|-.+. .|+-.+ +.
T Consensus        70 sAIMnP~~~i-iALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~~-~l~lVT-~t  125 (494)
T 1bpo_A           70 SAIMNPASKV-IALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DN  125 (494)
T ss_dssp             EEEECSSSSC-EEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEETT-EEEEEC-SS
T ss_pred             eeeeCCCCcE-EEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCCC-eEEEEc-CC
Confidence            4556777773 44433 58999999999988875332                    2345555665443 444443 46


Q ss_pred             eEEEEEccCCceeeeEEEeeccc----cCEEEEEEcCCCCeeEEEEec------CCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          431 IVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       431 ~v~vwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~~------~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      .|+-|++.+.....+  .+.-|.    ..|..-..+++.+. ++++|=      -.|.+.+|..+. +..+.+.||.+.-
T Consensus       126 aVyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F  201 (494)
T 1bpo_A          126 AVYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF  201 (494)
T ss_dssp             EEEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSE-EEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEE
T ss_pred             eeEEecccCCCCchh--heecchhcccceEEEEEECCCCCe-EEEEeecccCCcccceEEEeeccc-cccchheeeeeee
Confidence            799999976443322  343343    35777778888885 333332      346789999654 4457788887665


Q ss_pred             EEEeeeecCC-ccEEEEEeCC---CeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311          501 YSVCPHHKEN-IQFIFSTALD---GKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  575 (1102)
Q Consensus       501 ~~v~~~~~~~-~~~l~s~s~d---g~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  575 (1102)
                      ..+.+..... ..+++.+...   +.+++-++... ...   ..-......+.|.|+..       ..-..++.+++.-.
T Consensus       202 ~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~---~~f~kk~vdv~fppe~~-------~DFPvamqvs~kyg  271 (494)
T 1bpo_A          202 AQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN---QPFPKKAVDVFFPPEAQ-------NDFPVAMQISEKHD  271 (494)
T ss_dssp             EEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTC---CCCCCEEEECCCCTTST-------TCCEEEEEEETTTT
T ss_pred             EEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCC---CCccceeeeeeCCcccc-------cCceeEEEecccCC
Confidence            5544321111 1233434332   68888888653 111   11122244445555432       23445677777778


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      .++....-|.|++||++++.++..-.....  .|...+......-++.....|.|.-..+...
T Consensus       272 viyviTK~G~i~lyDleTgt~i~~nrIs~~--~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~  332 (494)
T 1bpo_A          272 VVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEEE  332 (494)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred             EEEEEecCceEEEEecccceeeeeecccCC--ceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence            899999999999999999999988775544  4544555555556666668888877776655

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.21  E-value=0.092  Score=57.20  Aligned_cols=239  Identities=11%  Similarity=0.095  Sum_probs=127.4

Q ss_pred             CeeEEEEecCCC-eEEEEeCCeEEEEEcCCCcee---eee----cCCCCCeeEEEEecC---CCcEEEEEeC-------C
Q 001311          808 AVPCFALSKNDS-YVMSASGGKISLFNMMTFKTM---ATF----MPPPPAATFLAFHPQ---DNNIIAIGMD-------D  869 (1102)
Q Consensus       808 ~i~~l~~s~d~~-~las~sdg~I~iwd~~~~~~~---~~~----~~~~~~i~~l~~sp~---d~~~lasg~~-------d  869 (1102)
                      ....|+|.|||+ ++++-..|.|++++.. +...   ..+    .........++|+|+   ++.+.++-..       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            468999999999 6655558999999854 3221   111    112345789999993   3444444332       2


Q ss_pred             CcEEEEEeecc-------ee-eeeec-----cccccceeEEEecCCCEEEEEcCC-------------CcEEEEEcCCCc
Q 001311          870 SSIQIYNVRVD-------EV-KSKLK-----GHSKRITGLAFSHALNVLVSSGAD-------------SQLCVWSSDGWE  923 (1102)
Q Consensus       870 g~v~vwd~~~~-------~~-~~~l~-----~h~~~V~~l~~s~d~~~l~s~s~D-------------g~i~vwd~~~~~  923 (1102)
                      ..|..|++..+       +. +..+.     .|.  -..|+|.|||.+.++.+..             |.|.-++.++.-
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence            35666666432       11 11121     132  3579999999777765442             345555655320


Q ss_pred             cc----------ceeeeecCCCCCCCCCCCcEEEEcc-CCcEEEEE--eCCeEEEEEcCCceEee---------------
Q 001311          924 KQ----------KNRFLQIPTGRTPTAQSDTRVQFHQ-DQIHFLVV--HETQLAIFETTKLECVK---------------  975 (1102)
Q Consensus       924 ~~----------~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~--~d~~i~iwd~~~~~~~~---------------  975 (1102)
                      ..          .....  ..++    .....++|+| +|.+.++-  .++.=.|.-+..+....               
T Consensus       176 p~~npf~~~~~~~~~i~--a~G~----rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~  249 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIW--SYGI----RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI  249 (353)
T ss_dssp             CTTCTTTTSTTSCTTEE--EECC----SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred             CCCCCCcCCCCCCccEE--EEcC----cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence            00          00000  1111    1357899999 67666652  22222333222221100               


Q ss_pred             --------------eeccCCCCCCeeEEEEcC-------CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCC
Q 001311          976 --------------QWVPRESSAPITHATFSC-------DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSS 1034 (1102)
Q Consensus       976 --------------~~~~~~h~~~v~~l~~sp-------d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~ 1034 (1102)
                                    .+.. .+...+..++|..       +|.++++.-..+.|...+++.++......   ++..    .
T Consensus       250 ~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~~----~  321 (353)
T 2g8s_A          250 PEAKGEIVAGTEQPVFYW-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILTD----R  321 (353)
T ss_dssp             TTCCBSSCTTSCCCSEEE-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESGG----G
T ss_pred             CcccCCCCCCccCCeEEe-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cccC----C
Confidence                          0000 1233567788864       57777777677888888888765543322   1111    1


Q ss_pred             cccceEEEecCCCCCEEEEEecCCcEEEEec
Q 001311         1035 NVHPLVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1035 ~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                      .-.+..+++.| ||.+.++.. +..=+||.+
T Consensus       322 ~~rp~~v~~~p-dG~lyv~td-~~~g~I~ri  350 (353)
T 2g8s_A          322 GQRIRDVRTGP-DGYLYVLTD-ESSGELLKV  350 (353)
T ss_dssp             CCCEEEEEECT-TSCEEEEEC-STTEEEEEE
T ss_pred             CCceeEEEECC-CCcEEEEEe-CCCCEEEEE
Confidence            12466899999 677666433 222355655

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.18  E-value=0.18  Score=54.82  Aligned_cols=109  Identities=17%  Similarity=0.155  Sum_probs=63.5

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC---CC
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GS  421 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~  421 (1102)
                      .-...+.++|.|||+ |+++ ..+|.|.+++  +++......+.              +..........|+|+||   +.
T Consensus        29 ~l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~~--------------v~~~g~~~p~gia~~pdf~~~g   90 (352)
T 2ism_A           29 GLEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAELS--------------VYHRGESGLLGLALHPRFPQEP   90 (352)
T ss_dssp             CCSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEECC--------------CCCSTTCSEEEEEECTTTTTSC
T ss_pred             CCCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecce--------------EeecCCCCceeEEECCCCCCCC
Confidence            345678999999998 3544 5569999998  44422110000              12223457889999998   55


Q ss_pred             eEEEEEC-C-----CeEEEEEccCCcee--eeEE-Eee---ccccCEEEEEEcCCCCeeEEEEe
Q 001311          422 LFGVAYS-R-----HIVQIYSYHGGDEV--RQHL-EID---AHVGGVNDIAFSHPNKQLCVITC  473 (1102)
Q Consensus       422 ~las~~~-d-----~~v~vwd~~~~~~~--~~~~-~l~---~h~~~V~~v~~s~d~~~~~l~s~  473 (1102)
                      +|.++.. +     +.|..|+...+...  +.+. .+.   +.......++|.|||.  +.++.
T Consensus        91 ~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~  152 (352)
T 2ism_A           91 YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT  152 (352)
T ss_dssp             EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence            5555433 2     67888888754211  1111 122   1111236899999996  45553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.16  E-value=0.095  Score=55.07  Aligned_cols=163  Identities=10%  Similarity=0.098  Sum_probs=105.5

Q ss_pred             CeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCcccccccc--CCCCCCeEEEEE---ccCCCe
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALV--KDPGVSVNRVIW---SPDGSL  422 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~---spdg~~  422 (1102)
                      -..+++|.+....++++.-..++|..||...+..... .+.  +           +.  ......+..|.|   .|++++
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~--~-----------~s~~g~~~~~~sGl~~~~~D~~grL   79 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VID--G-----------ASSNGDGEQQMSGLSLLTHDNSKRL   79 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCT--T-----------TCCSSCCSEEEEEEEESSSSSCCEE
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecC--C-----------ccccCCCcceeeEEEEeccCCCCcE
Confidence            3468899987776566655789999999986544321 110  0           00  111124689999   688888


Q ss_pred             EEEEEC-------------CCeEEEEEcc---CCceeeeEEEeeccc-----------cCEEEEEEcCCCCeeEEEEecC
Q 001311          423 FGVAYS-------------RHIVQIYSYH---GGDEVRQHLEIDAHV-----------GGVNDIAFSHPNKQLCVITCGD  475 (1102)
Q Consensus       423 las~~~-------------d~~v~vwd~~---~~~~~~~~~~l~~h~-----------~~V~~v~~s~d~~~~~l~s~~~  475 (1102)
                      +++...             +..|..||+.   +++.+.. ..|....           .....++..++|.  ..++++.
T Consensus        80 ~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~-~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~  156 (334)
T 2p9w_A           80 FAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWS-VNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFAL  156 (334)
T ss_dssp             EEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEE-EESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEE
T ss_pred             EEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEE-ecCccccccccccccccccCCceeEECCCCC--EEEeCCC
Confidence            886442             6789999999   7765532 2333222           2488999999999  6788887


Q ss_pred             C-CcEEEEeCCCCeeeEEeec------CCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCC
Q 001311          476 D-KTIKVWDATNGAKQYIFEG------HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDN  530 (1102)
Q Consensus       476 d-~~i~vWd~~~~~~~~~~~~------h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~  530 (1102)
                      . +.|...+.. |+.+..+..      .....+.|+++  ++|..|+.....|.|..+|+..
T Consensus       157 ~~~~I~rV~pd-G~~~~~~~~~~~~~~~~~G~nGIv~~--pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          157 GMPAIARVSAD-GKTVSTFAWESGNGGQRPGYSGITFD--PHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             SSCEEEEECTT-SCCEEEEEECCCCSSSCCSCSEEEEE--TTTTEEEEESSSSSEEEEECSS
T ss_pred             CCCeEEEEeCC-CCEEeeeeecCCCcccccCcceEEEe--CCCCEEEEEcCCCeEEEEcCCC
Confidence            7 777777744 443333311      11225577764  5556777776699999999874

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.13  E-value=0.067  Score=56.92  Aligned_cols=217  Identities=10%  Similarity=0.059  Sum_probs=114.5

Q ss_pred             CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCC-----CcEEEEEeecce-----eeeeeccccccce
Q 001311          827 GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRVDE-----VKSKLKGHSKRIT  894 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~~~-----~~~~l~~h~~~V~  894 (1102)
                      ..+.+||..+.+-...  +...... .+++ .. ++++++.|+.+     ..+.+||..+.+     .+..+......-.
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~-~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~  107 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRY-VASV-SL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG  107 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS-CEEE-EE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhcc-ccEE-EE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee
Confidence            3588999876543221  2211111 2222 23 67788888765     368999987654     2222222111111


Q ss_pred             eEEEecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC-----CeE
Q 001311          895 GLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-----TQL  963 (1102)
Q Consensus       895 ~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d-----~~i  963 (1102)
                        +...+++.++.|+.++     .+.+||..+.+-....  ......     .-..+ ..-+++.++.+ .+     ..+
T Consensus       108 --~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~--~~p~~r-----~~~~~-~~~~~~iyv~GG~~~~~~~~~~  177 (301)
T 2vpj_A          108 --ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLG--DMQTAR-----EGAGL-VVASGVIYCLGGYDGLNILNSV  177 (301)
T ss_dssp             --EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE--ECSSCC-----BSCEE-EEETTEEEEECCBCSSCBCCCE
T ss_pred             --EEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECC--CCCCCc-----ccceE-EEECCEEEEECCCCCCcccceE
Confidence              2223677777776543     5788888775432221  111111     11222 22366666664 32     468


Q ss_pred             EEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccc
Q 001311          964 AIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1038 (1102)
Q Consensus       964 ~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 1038 (1102)
                      .+||..+.+....-...........+.  -++++++.|+.+     ..+.+||+.+.+-...-.    ++......    
T Consensus       178 ~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~r~~~----  247 (301)
T 2vpj_A          178 EKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTPRCYV----  247 (301)
T ss_dssp             EEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSCCBSC----
T ss_pred             EEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCcccce----
Confidence            999998876654422111111112222  267788888764     468999999886553321    22221111    


Q ss_pred             eEEEecCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001311         1039 LVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1069 (1102)
Q Consensus      1039 ~~v~f~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1069 (1102)
                       ++...  ++.+++.|+.+     ..|.+||+.+.+
T Consensus       248 -~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  280 (301)
T 2vpj_A          248 -GATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS  280 (301)
T ss_dssp             -EEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred             -eEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence             22222  46788888776     357788887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.12  E-value=0.082  Score=56.36  Aligned_cols=224  Identities=10%  Similarity=0.034  Sum_probs=119.0

Q ss_pred             eEEEEe---CCeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCC----CcEEEEEeeccee--eeeecc
Q 001311          820 YVMSAS---GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVDEV--KSKLKG  888 (1102)
Q Consensus       820 ~las~s---dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~~~--~~~l~~  888 (1102)
                      +++.|+   ...+.+||..+.+-..  .+........++.  - ++++++.|+.+    ..+.+||..+.+-  +..+..
T Consensus        14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            444554   2578999988754322  2222122222222  2 67788888765    5788999877543  222221


Q ss_pred             ccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e--
Q 001311          889 HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H--  959 (1102)
Q Consensus       889 h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~--  959 (1102)
                      ...  ...+..-++++++.|+.+      ..+.+||..+.+-..   +.....    ...-..++ .-+++.++.+ .  
T Consensus        91 ~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~---~~~~p~----~r~~~~~~-~~~~~iyv~GG~~~  160 (306)
T 3ii7_A           91 PRD--SLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHT---KPSMLT----QRCSHGMV-EANGLIYVCGGSLG  160 (306)
T ss_dssp             CCB--SCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEE---ECCCSS----CCBSCEEE-EETTEEEEECCEES
T ss_pred             ccc--ceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEe---CCCCcC----CcceeEEE-EECCEEEEECCCCC
Confidence            111  112222367777888765      458899988754321   211111    01112222 2366666663 2  


Q ss_pred             -------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeEEEeCCCccc
Q 001311          960 -------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYL 1027 (1102)
Q Consensus       960 -------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~ 1027 (1102)
                             -..+.+||..+.+....-.... ...-.+++.. ++++++.|+.+     ..+.+||..+.+-... .   .+
T Consensus       161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~  234 (306)
T 3ii7_A          161 NNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---PM  234 (306)
T ss_dssp             CTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---CC
T ss_pred             CCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---CC
Confidence                   3458899998886544322111 1111222222 67777777654     3588999988765432 1   12


Q ss_pred             CCCCCCCcccceEEEecCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001311         1028 PAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1069 (1102)
Q Consensus      1028 ~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1069 (1102)
                      +......     ++...  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       235 p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~  274 (306)
T 3ii7_A          235 PWKGVTV-----KCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK  274 (306)
T ss_dssp             SCCBSCC-----EEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred             CCCccce-----eEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence            2221111     22222  46788888865     467888887765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.09  E-value=0.47  Score=51.48  Aligned_cols=108  Identities=18%  Similarity=0.099  Sum_probs=61.9

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC---CCe
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL  422 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~  422 (1102)
                      -...+.|+|.|||+ |+++ ..+|.|.+++ .+++ .....+.              +..........|+|+|+   +.+
T Consensus        28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~~--------------v~~~g~~g~~gia~~pdf~~~g~   89 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASFD--------------VANVGEAGLLGLALHPEFPKKSW   89 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEECC--------------CCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeeccc--------------eeecCCCceeeEEeCCCCCcCCE
Confidence            45679999999998 3444 5569999997 3454 1110000              11222356889999998   555


Q ss_pred             EEEEEC----C----CeEEEEEccCC--ce--eeeE-EEee-ccccCEEEEEEcCCCCeeEEEEe
Q 001311          423 FGVAYS----R----HIVQIYSYHGG--DE--VRQH-LEID-AHVGGVNDIAFSHPNKQLCVITC  473 (1102)
Q Consensus       423 las~~~----d----~~v~vwd~~~~--~~--~~~~-~~l~-~h~~~V~~v~~s~d~~~~~l~s~  473 (1102)
                      |.++..    +    ..|..|+...+  ..  .+.+ ..+. +.......|+|.|||.  ++++.
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~  152 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITT  152 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEE
Confidence            554432    3    56777887654  11  1111 1122 1111346799999997  45553

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.05  E-value=0.5  Score=51.15  Aligned_cols=235  Identities=14%  Similarity=0.133  Sum_probs=151.4

Q ss_pred             eeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeec
Q 001311          809 VPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLK  887 (1102)
Q Consensus       809 i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~  887 (1102)
                      ..+..++|..+.+|.-...++.|||+++.+.++...- ...|.--.|-.  .+.|+..+ +..|+-|++.. ....+.+.
T Consensus        68 AdsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~-~e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFd  143 (494)
T 1bpo_A           68 ADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFD  143 (494)
T ss_dssp             CSEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEE
T ss_pred             cceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceec-CCCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhhee
Confidence            3467788998888887788999999999888877663 33577777764  45666655 56899999974 34555565


Q ss_pred             ccc----ccceeEEEecCCCEEEEEcC-------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC----
Q 001311          888 GHS----KRITGLAFSHALNVLVSSGA-------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ----  952 (1102)
Q Consensus       888 ~h~----~~V~~l~~s~d~~~l~s~s~-------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg----  952 (1102)
                      -|.    ..|..-..++|.+|++..|-       .|.+.+|+.+.+.      -+..+||..     .-..+-.+|    
T Consensus       144 R~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~  212 (494)
T 1bpo_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEE  212 (494)
T ss_dssp             CCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSE
T ss_pred             cchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCC
Confidence            553    45666677889999885542       3678899988743      344455421     112222222    


Q ss_pred             -cEEEEEe----CCeEEEEEcCCc---------eEeeeec-cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCcee
Q 001311          953 -IHFLVVH----ETQLAIFETTKL---------ECVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKL 1017 (1102)
Q Consensus       953 -~~l~~~~----d~~i~iwd~~~~---------~~~~~~~-~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~ 1017 (1102)
                       ..++.+.    .+.++|.++...         +.+..+. +..-.+-.-++..|+.-..++..+.-|.|.+||+++|.+
T Consensus       213 ~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTC  292 (494)
T ss_dssp             EEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCE
T ss_pred             ceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEeccccee
Confidence             2233232    268888888432         1111111 222355567888899888899999999999999999999


Q ss_pred             EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1018 RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1018 ~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      +.+-+.    .    ...+.  ..+.... ..=++.....|.|.--.+++..
T Consensus       293 i~~nrI----s----~~~iF--~t~~~~~-~~Gi~~Vnr~GqVl~v~v~e~~  333 (494)
T 1bpo_A          293 IYMNRI----S----GETIF--VTAPHEA-TAGIIGVNRKGQVLSVCVEEEN  333 (494)
T ss_dssp             EEEEEC----C----SSCEE--EEEEETT-TTEEEEEETTCEEEEEEECTTT
T ss_pred             eeeecc----c----CCceE--EecccCC-CCcEEEEccCceEEEEEEcccc
Confidence            987662    1    11133  2333332 3345555688888777776654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.02  E-value=0.11  Score=55.08  Aligned_cols=229  Identities=12%  Similarity=0.114  Sum_probs=119.3

Q ss_pred             CCeEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeeccee--e
Q 001311          818 DSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDEV--K  883 (1102)
Q Consensus       818 ~~~las~s-d----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~~--~  883 (1102)
                      +.+++.|+ +    ..+.+||..+.+-...  +....... +++. - ++++++.|+.++     .+.+||..+.+-  +
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            34455554 2    4588899876543221  12111111 2222 2 677888887553     588899876542  2


Q ss_pred             eeeccccccceeEEEecCCCEEEEEcCCC-----cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311          884 SKLKGHSKRITGLAFSHALNVLVSSGADS-----QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  958 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  958 (1102)
                      ..+......-..+  .-+++.++.|+.++     .+.+||+.+.+-.   .+......    ..-..++. -+++.++.+
T Consensus        93 ~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---~~~~~p~~----r~~~~~~~-~~~~iyv~G  162 (302)
T 2xn4_A           93 ANMRDRRSTLGAA--VLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF---HVAPMNTR----RSSVGVGV-VGGLLYAVG  162 (302)
T ss_dssp             CCCSSCCBSCEEE--EETTEEEEEEEECSSCEEEEEEEEETTTTEEE---EECCCSSC----CBSCEEEE-ETTEEEEEC
T ss_pred             CCCCccccceEEE--EECCEEEEEcCCCCCccCceEEEEeCCCCeEe---ecCCCCCc----ccCceEEE-ECCEEEEEe
Confidence            2222211111122  23677778887653     4778888775432   22111110    11122222 356666653


Q ss_pred             -e-------CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCceeEEEeCCCc
Q 001311          959 -H-------ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSA 1025 (1102)
Q Consensus       959 -~-------d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~ 1025 (1102)
                       .       -..+.+||..+.+....-.... ...-.+++ .-++++++.|+.++     .+.+||..+++-...-.   
T Consensus       163 G~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---  237 (302)
T 2xn4_A          163 GYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVG-VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD---  237 (302)
T ss_dssp             CEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred             CCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEE-EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence             2       2458899998876554322111 11112222 22678888887653     68999998876543221   


Q ss_pred             ccCCCCCCCcccceEEEecCCCCCEEEEEecCC-----cEEEEeccCCCccccc
Q 001311         1026 YLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDG-----GVHVFEPLESEGKWGV 1074 (1102)
Q Consensus      1026 ~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg-----~v~vW~~~~~~~~~~~ 1074 (1102)
                       ++......     ++...  ++.+++.|+.++     .+.+||+.+.+  |..
T Consensus       238 -~~~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~  281 (302)
T 2xn4_A          238 -MNMCRRNA-----GVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV  281 (302)
T ss_dssp             -CSSCCBSC-----EEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred             -CCCccccC-----eEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence             22211111     22222  467888888764     48888887765  654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.91  E-value=0.11  Score=55.04  Aligned_cols=188  Identities=9%  Similarity=0.030  Sum_probs=100.5

Q ss_pred             cCCCeEEEEe-C-----CeEEEEEcCCCc-----eeeeecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeec
Q 001311          816 KNDSYVMSAS-G-----GKISLFNMMTFK-----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRV  879 (1102)
Q Consensus       816 ~d~~~las~s-d-----g~I~iwd~~~~~-----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~  879 (1102)
                      .+++.++.|+ +     ..+.+||..+.+     .+..+........ ++. . ++++++.|+.++     .+.+||..+
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~-~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAG-ATT-L-GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCE-EEE-E-TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCcccee-EEE-E-CCEEEEEcccCCCcccceEEEEcCCC
Confidence            4666777665 3     358999988755     2222222112222 222 2 677888887543     688899876


Q ss_pred             ce--eeeeeccccccceeEEEecCCCEEEEEcCC-----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311          880 DE--VKSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       880 ~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  952 (1102)
                      .+  .+..+....  ....+...+++.++.|+.+     ..+.+||+.+.+-..   +.....    ...-..+ ..-++
T Consensus       138 ~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~---~~~~p~----~r~~~~~-~~~~~  207 (301)
T 2vpj_A          138 DQWSMLGDMQTAR--EGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN---VTPMAT----KRSGAGV-ALLND  207 (301)
T ss_dssp             TEEEEEEECSSCC--BSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEE---ECCCSS----CCBSCEE-EEETT
T ss_pred             CeEEECCCCCCCc--ccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEe---CCCCCc----ccccceE-EEECC
Confidence            54  222222111  1112222377777777765     458899988754322   211111    0111222 22356


Q ss_pred             cEEEEE-e-----CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeE
Q 001311          953 IHFLVV-H-----ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1018 (1102)
Q Consensus       953 ~~l~~~-~-----d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~ 1018 (1102)
                      +.++.+ .     ...+.+||+.+.+....-...........+.  -++++++.|+.+     ..|.+||..+.+-.
T Consensus       208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            666664 3     2479999999877654422211111122222  377888888765     45888898876543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.81  E-value=0.31  Score=52.08  Aligned_cols=224  Identities=11%  Similarity=0.104  Sum_probs=116.6

Q ss_pred             CCeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCcEEEEEeC-----C------CcEEEEEeeccee--eeeeccccc
Q 001311          826 GGKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD-----D------SSIQIYNVRVDEV--KSKLKGHSK  891 (1102)
Q Consensus       826 dg~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~-----d------g~v~vwd~~~~~~--~~~l~~h~~  891 (1102)
                      ...+.+||..+.+-.. .+..........+... ++++++.|+.     .      ..+.+||..+++-  +..+.....
T Consensus        12 G~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~   90 (315)
T 4asc_A           12 EEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRC   90 (315)
T ss_dssp             TTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEE
T ss_pred             CCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchh
Confidence            3678999988765332 2222223333333444 7788888874     1      1277888876542  222221111


Q ss_pred             cceeEEEecCCCEEEEEcCC--------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e-C-
Q 001311          892 RITGLAFSHALNVLVSSGAD--------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E-  960 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s~D--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~-d-  960 (1102)
                      .-. ++. -+++.++.|+.+        ..+.+||..+.+-.   .+.....    . .....+..-+++.++.+ . + 
T Consensus        91 ~~~-~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~---~~~~~p~----~-r~~~~~~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           91 LFG-LGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG---ESDPLPY----V-VYGHTVLSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             SCE-EEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEE---ECCCCSS----C-CBSCEEEEETTEEEEECCBCTT
T ss_pred             cee-EEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEe---ECCCCCC----c-ccceeEEEECCEEEEEeCCCCC
Confidence            111 222 266777777742        35888998875422   1111111    0 11222233566666664 3 2 


Q ss_pred             ----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCceeEEEeCCCcccCCCC
Q 001311          961 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLRCRINPSAYLPAGV 1031 (1102)
Q Consensus       961 ----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~~~~~~~~~~~~~~gh 1031 (1102)
                          ..+.+||..+.+....-.... ...-.+++ .-++++++.|+.++     .+.+||..+.+-...-.    ++...
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r  234 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER  234 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC
T ss_pred             CcccceEEEEeCCCCeEEECCCCCC-chhceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc
Confidence                469999998876544322111 11112222 22778888887654     58899998876543321    22221


Q ss_pred             CCCcccceEEEecCCCCCEEEEEecCC--------------cEEEEeccCCCcccccC
Q 001311         1032 SSSNVHPLVIAAHPQEPNEFALGLSDG--------------GVHVFEPLESEGKWGVP 1075 (1102)
Q Consensus      1032 ~~~~v~~~~v~f~p~d~~~l~s~~~Dg--------------~v~vW~~~~~~~~~~~~ 1075 (1102)
                      ...     ++...  ++.+++.|+.++              .+.+||+.+.+  |...
T Consensus       235 ~~~-----~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~  283 (315)
T 4asc_A          235 SSL-----SLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV  283 (315)
T ss_dssp             BSC-----EEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred             cce-----eEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence            111     22222  467888888643              36677777654  5543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.79  E-value=0.2  Score=53.35  Aligned_cols=228  Identities=11%  Similarity=0.059  Sum_probs=118.4

Q ss_pred             cCCCeEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeC----C-----CcEEEEEeec
Q 001311          816 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMD----D-----SSIQIYNVRV  879 (1102)
Q Consensus       816 ~d~~~las~s-d----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~----d-----g~v~vwd~~~  879 (1102)
                      -++.+++.|+ +    ..+.+||..+.+-...  +....... +++. - ++++++.|+.    +     ..+.+||..+
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            3455566554 2    4688999876543222  11111111 2222 2 5778888776    2     3688899876


Q ss_pred             cee--eeeeccccccceeEEEecCCCEEEEEcCC-----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311          880 DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       880 ~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  952 (1102)
                      .+-  +..+......-..+.  -+++.++.|+.+     ..+.+||..+.+-..   +.....    ...-..++. -++
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~----~r~~~~~~~-~~~  169 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLT----RRIGVGVAV-LNR  169 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSS----CCBSCEEEE-ETT
T ss_pred             CeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeE---CCCCCc----cccceEEEE-ECC
Confidence            542  222221111112222  367777777644     358889988754321   111110    011122222 256


Q ss_pred             cEEEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeEEEe
Q 001311          953 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRI 1021 (1102)
Q Consensus       953 ~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~~~~ 1021 (1102)
                      +.++.+ .+     ..+.+||..+.+....-........-..+.+  ++++++.|+.+     ..+.+||+.+.+-...-
T Consensus       170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            666664 32     4689999988765543221111111222222  77788888765     45999999887654321


Q ss_pred             CCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC-----CcEEEEeccCCC
Q 001311         1022 NPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD-----GGVHVFEPLESE 1069 (1102)
Q Consensus      1022 ~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D-----g~v~vW~~~~~~ 1069 (1102)
                      .    ++......     ++...  ++.+++.|+.+     ..+.+||+.+.+
T Consensus       248 ~----~p~~r~~~-----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          248 P----MKHRRSAL-----GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  289 (308)
T ss_dssp             C----CSSCCBSC-----EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             C----CCCCccce-----EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence            1    22221111     22222  46788888765     357788887755

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.79  E-value=0.08  Score=57.25  Aligned_cols=109  Identities=11%  Similarity=0.076  Sum_probs=80.7

Q ss_pred             EEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCC----CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee----
Q 001311          811 CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV----  882 (1102)
Q Consensus       811 ~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~----  882 (1102)
                      ......+|..++.+.++.||.-++.....-+.+...    -..|..+..+| +|++||..+ +..|.|-.+..+..    
T Consensus        25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence            345667888999999999999998754444444432    23688999999 999999886 55899988873210    


Q ss_pred             --------eeeecc------ccccceeEEEecC---CCEEEEEcCCCcEEEEEcCC
Q 001311          883 --------KSKLKG------HSKRITGLAFSHA---LNVLVSSGADSQLCVWSSDG  921 (1102)
Q Consensus       883 --------~~~l~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~i~vwd~~~  921 (1102)
                              .+.+.-      ...+|..+.|+|-   +..|++-..|++|++||+..
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~  158 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILN  158 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTC
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEccc
Confidence                    011111      2467999999985   56899999999999999986

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.65  E-value=0.39  Score=54.09  Aligned_cols=103  Identities=15%  Similarity=0.123  Sum_probs=62.2

Q ss_pred             CeeEEEEecCCCeEEEEeC-CeEEEEEcCCCcee--eeecC------CCCCeeEEEEecC---CCcEEEEEeC-------
Q 001311          808 AVPCFALSKNDSYVMSASG-GKISLFNMMTFKTM--ATFMP------PPPAATFLAFHPQ---DNNIIAIGMD-------  868 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sd-g~I~iwd~~~~~~~--~~~~~------~~~~i~~l~~sp~---d~~~lasg~~-------  868 (1102)
                      ....|+|.|||+++++-.. +.|++++..++...  ..+..      .......|+|+|+   ++.+.++-+.       
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            4679999999998887765 47988886555432  22221      2345779999994   3444443332       


Q ss_pred             -----CCcEEEEEeecc-------eee-eeecc-ccccceeEEEecCCCEEEEEcC
Q 001311          869 -----DSSIQIYNVRVD-------EVK-SKLKG-HSKRITGLAFSHALNVLVSSGA  910 (1102)
Q Consensus       869 -----dg~v~vwd~~~~-------~~~-~~l~~-h~~~V~~l~~s~d~~~l~s~s~  910 (1102)
                           ...|.-|++..+       +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                 235666665431       111 11221 1123578999999998887664

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.58  E-value=0.22  Score=53.03  Aligned_cols=188  Identities=11%  Similarity=0.052  Sum_probs=100.9

Q ss_pred             cCCCeEEEEe-C----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCC------CcEEEEEeeccee
Q 001311          816 KNDSYVMSAS-G----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD------SSIQIYNVRVDEV  882 (1102)
Q Consensus       816 ~d~~~las~s-d----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d------g~v~vwd~~~~~~  882 (1102)
                      -+++.++.|+ +    ..+.+||..+.+-...  +........++.  - ++++++.|+.+      ..+.+||..+.+-
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--A-EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--E-TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--E-CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            3666667665 3    5688999887543322  221111222222  2 67788888765      4688999887542


Q ss_pred             --eeeeccccccceeEEEecCCCEEEEEcC---------CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC
Q 001311          883 --KSKLKGHSKRITGLAFSHALNVLVSSGA---------DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD  951 (1102)
Q Consensus       883 --~~~l~~h~~~V~~l~~s~d~~~l~s~s~---------Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd  951 (1102)
                        +..+.....  ...+..-++++++.|+.         -..+.+||+.+.+-.   .+.....    ...-..++. -+
T Consensus       131 ~~~~~~p~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~----~r~~~~~~~-~~  200 (306)
T 3ii7_A          131 HTKPSMLTQRC--SHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT---ELCPMIE----ARKNHGLVF-VK  200 (306)
T ss_dssp             EEECCCSSCCB--SCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEE---EECCCSS----CCBSCEEEE-ET
T ss_pred             EeCCCCcCCcc--eeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEE---ECCCccc----hhhcceEEE-EC
Confidence              222221111  11122236677777764         344889998875432   2211111    011122222 26


Q ss_pred             CcEEEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeE
Q 001311          952 QIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1018 (1102)
Q Consensus       952 g~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~ 1018 (1102)
                      ++.++.+ .+     ..+.+||..+.+....-...........+.+  ++++++.|+.+     ..+.+||..+.+-.
T Consensus       201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            6666663 22     4689999988765443221111112222333  77888888854     46899999887544

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.35  E-value=1.4  Score=47.05  Aligned_cols=99  Identities=11%  Similarity=0.119  Sum_probs=59.3

Q ss_pred             eeEEEEecCCCeEEEEe--CCeEEEEEcCCCce------------------eeeecCCCCCeeEEEEecCCCcEEEEEeC
Q 001311          809 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKT------------------MATFMPPPPAATFLAFHPQDNNIIAIGMD  868 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~------------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~  868 (1102)
                      ...++|+|+|++.++-.  ++.=.|--+..+..                  +..+..+......++|.  ++.++.....
T Consensus       204 p~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~--~g~~~~~~l~  281 (347)
T 3das_A          204 VQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA--EGSVWMAGLR  281 (347)
T ss_dssp             CCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE--TTEEEEEEST
T ss_pred             cceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE--cCceeecccc
Confidence            56789999887666543  33222222222111                  12222222356788887  4667776667


Q ss_pred             CCcEEEEEeeccee----eeeeccccccceeEEEecCCCEEEEEc
Q 001311          869 DSSIQIYNVRVDEV----KSKLKGHSKRITGLAFSHALNVLVSSG  909 (1102)
Q Consensus       869 dg~v~vwd~~~~~~----~~~l~~h~~~V~~l~~s~d~~~l~s~s  909 (1102)
                      .+.|....+.....    ...+.+...++..|+..|||.++++.+
T Consensus       282 ~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          282 GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            77787777765432    223445557899999999998777654

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.32  E-value=0.47  Score=51.69  Aligned_cols=232  Identities=13%  Similarity=0.095  Sum_probs=111.7

Q ss_pred             CCCeEEEEe--CCeEEEEEcCC----CceeeeecCCCCCeeEEEEecCCCcEEEEEeC-C---------CcEEEEEeecc
Q 001311          817 NDSYVMSAS--GGKISLFNMMT----FKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-D---------SSIQIYNVRVD  880 (1102)
Q Consensus       817 d~~~las~s--dg~I~iwd~~~----~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-d---------g~v~vwd~~~~  880 (1102)
                      ++++++.|+  ...+.++|..+    ++.+..+......-.+++..  ++++++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            677777776  46799999864    22222222111111222222  5778888776 2         46889998775


Q ss_pred             ee--eeeeccccccceeEEEecCCCEEEEEcCC---------------------------------------CcEEEEEc
Q 001311          881 EV--KSKLKGHSKRITGLAFSHALNVLVSSGAD---------------------------------------SQLCVWSS  919 (1102)
Q Consensus       881 ~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D---------------------------------------g~i~vwd~  919 (1102)
                      +-  +..+. ........+...++++++.|+.+                                       ..+.+||.
T Consensus        97 ~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~  175 (357)
T 2uvk_A           97 SWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDP  175 (357)
T ss_dssp             EEEECSCCC-SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEET
T ss_pred             cEEECCCCC-CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeC
Confidence            42  22222 11122222233578888888865                                       46888998


Q ss_pred             CCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e------CCeEEEEEc--CCceEeeeeccCCCCCCeeEEE
Q 001311          920 DGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H------ETQLAIFET--TKLECVKQWVPRESSAPITHAT  990 (1102)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~------d~~i~iwd~--~~~~~~~~~~~~~h~~~v~~l~  990 (1102)
                      .+.+-.....  .....    ..-..++. -+++.++.+ .      ...+.+||+  .+.+....-............+
T Consensus       176 ~~~~W~~~~~--~p~~~----~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~  248 (357)
T 2uvk_A          176 STQQWSYAGE--SPWYG----TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFA  248 (357)
T ss_dssp             TTTEEEEEEE--CSSCC----CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEE
T ss_pred             CCCcEEECCC--CCCCC----cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceE
Confidence            8754322211  11110    01022332 355655553 2      235777876  5544433211111111112222


Q ss_pred             EcCCCcEEEEEeCC----------------------CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCC
Q 001311          991 FSCDSQLVYACFLD----------------------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEP 1048 (1102)
Q Consensus       991 ~spd~~~l~s~s~D----------------------g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~ 1048 (1102)
                      ...++++++.|+.+                      ..+.+||+.+.+-...-.    ++.....+     ++...  ++
T Consensus       249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~~-----~~~~~--~~  317 (357)
T 2uvk_A          249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGRAYG-----VSLPW--NN  317 (357)
T ss_dssp             EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCCBSS-----EEEEE--TT
T ss_pred             EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCcccc-----eeEEe--CC
Confidence            33467777777732                      257889988765433211    22221111     22222  46


Q ss_pred             CEEEEEecCC------cEEEEeccCCC
Q 001311         1049 NEFALGLSDG------GVHVFEPLESE 1069 (1102)
Q Consensus      1049 ~~l~s~~~Dg------~v~vW~~~~~~ 1069 (1102)
                      .+++.|+.++      .|.+.++.+++
T Consensus       318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          318 SLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             EEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            8888898764      34445666655

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.25  E-value=0.99  Score=48.91  Aligned_cols=112  Identities=13%  Similarity=0.167  Sum_probs=59.4

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC---CCeE
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSLF  423 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~l  423 (1102)
                      ...+.|+|.|||++|++ +...|.|++++.. ++...  .+.  +       .. .+.....+....|+|+||   +.+|
T Consensus        18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~-g~~~~--~~~--~-------~~-~v~~~g~~g~~gia~~pdf~~~g~l   83 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLI-TLRGGELRHWQAG-KGLSA--PLS--G-------VP-DVWAHGQGGLLDVVLAPDFAQSRRI   83 (353)
T ss_dssp             SSEEEEEECSTTCCEEE-EETTTEEEEEETT-TEECC--CCB--S-------CC-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred             CCcEEEEEcCCCCEEEE-EeCCceEEEEeCC-Cceee--Eec--C-------Cc-ccccCCCCCceeEEECCCCCCCCEE
Confidence            46789999999995344 4567999999853 32210  000  0       00 012223456789999996   4555


Q ss_pred             EEE-EC-------CCeEEEEEccCCc-eeeeEEE-eec------cccCEEEEEEcCCCCeeEEEEe
Q 001311          424 GVA-YS-------RHIVQIYSYHGGD-EVRQHLE-IDA------HVGGVNDIAFSHPNKQLCVITC  473 (1102)
Q Consensus       424 as~-~~-------d~~v~vwd~~~~~-~~~~~~~-l~~------h~~~V~~v~~s~d~~~~~l~s~  473 (1102)
                      ..+ ..       ...|..|++..+. .+..... +.+      ....-..|+|.|||. +++..|
T Consensus        84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G  148 (353)
T 2g8s_A           84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALG  148 (353)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEEC
T ss_pred             EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEEC
Confidence            444 22       2356667765431 1111111 111      111235799999996 244433

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=96.25  E-value=0.0037  Score=58.10  Aligned_cols=78  Identities=15%  Similarity=0.305  Sum_probs=63.7

Q ss_pred             hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCCc----hhHH---HHHH
Q 001311           60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDT----KSAR---SIML  132 (1102)
Q Consensus        60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~----~~~R---~~l~  132 (1102)
                      ++|.|+.|.|||||..|..++|..+|.+.-..+...+.+.+++|+.+....++.+++....++..    ..+|   ..|+
T Consensus        52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~  131 (156)
T 2nxp_A           52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK  131 (156)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence            89999999999999999999999999986666666679999999999999888888887777662    2233   5566


Q ss_pred             HHHHh
Q 001311          133 VELKK  137 (1102)
Q Consensus       133 ~~l~~  137 (1102)
                      ..|++
T Consensus       132 ~fL~~  136 (156)
T 2nxp_A          132 RHLQE  136 (156)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            66555

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=96.22  E-value=0.0012  Score=59.74  Aligned_cols=77  Identities=14%  Similarity=0.244  Sum_probs=60.4

Q ss_pred             hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC----c---hhHHHHHH
Q 001311           60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD----T---KSARSIML  132 (1102)
Q Consensus        60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~---~~~R~~l~  132 (1102)
                      ++|+|+.|.||||+..|..++|..+|.+.-..+... .+.+++|+.+....++.+++....++.    .   +.+=..|+
T Consensus        33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~  111 (138)
T 2j4b_A           33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI  111 (138)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence            899999999999999999999999999876666666 999999999998888887777666654    1   23335666


Q ss_pred             HHHHh
Q 001311          133 VELKK  137 (1102)
Q Consensus       133 ~~l~~  137 (1102)
                      ..|++
T Consensus       112 ~fL~~  116 (138)
T 2j4b_A          112 NFLEE  116 (138)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66655

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.11  E-value=0.06  Score=58.23  Aligned_cols=125  Identities=17%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             CCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEe-----e--eeeeeccCCCCccccccccCCCCCCeEEEEEcc-
Q 001311          347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVL-----R--NFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP-  418 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp-  418 (1102)
                      +.|..+..||+|++|.+.|.  ..|.|-.+..+.....     .  ..+.|.+..        .......+|..+-|+| 
T Consensus        66 ~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl  135 (452)
T 3pbp_A           66 DDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPK  135 (452)
T ss_dssp             CTTCEEEECTTSSEEEEECS--SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTT
T ss_pred             CceeEEEECCCCCEEEEecC--CeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEeccc
Confidence            47889999999997544443  6888888874432211     0  011121110        1112467899999999 


Q ss_pred             --CCCeEEEEECCCeEEEEEccCCceeee-------EEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          419 --DGSLFGVAYSRHIVQIYSYHGGDEVRQ-------HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       419 --dg~~las~~~d~~v~vwd~~~~~~~~~-------~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                        .+..|++-..|+.|++||+........       .+.+......|.+++|..++-.+++++....|.|+-
T Consensus       136 ~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          136 SYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             BGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             cCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence              577899999999999999986332111       011112235677888887666555555555555443

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.10  E-value=0.54  Score=49.72  Aligned_cols=187  Identities=12%  Similarity=0.106  Sum_probs=98.8

Q ss_pred             CCCeEEEEe-C-----CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeeccee-
Q 001311          817 NDSYVMSAS-G-----GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDEV-  882 (1102)
Q Consensus       817 d~~~las~s-d-----g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~~-  882 (1102)
                      +++.++.|+ +     ..+.+||..+.+-...  +........ ++. - ++++++.|+.++     .+.+||..+.+- 
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~-~~~-~-~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLG-AAV-L-NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCE-EEE-E-TTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceE-EEE-E-CCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            666777765 3     3588999876543222  221111222 222 2 577888887664     577888776542 


Q ss_pred             -eeeeccccccceeEEEecCCCEEEEEcCC-------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcE
Q 001311          883 -KSKLKGHSKRITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIH  954 (1102)
Q Consensus       883 -~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~  954 (1102)
                       +..+......- +++ .-+++.++.|+.+       ..+.+||+.+.+-..   +.....    ...-..++ .-+++.
T Consensus       138 ~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~----~r~~~~~~-~~~~~i  207 (302)
T 2xn4_A          138 HVAPMNTRRSSV-GVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTY---IAEMST----RRSGAGVG-VLNNLL  207 (302)
T ss_dssp             EECCCSSCCBSC-EEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEEE---ECCCSS----CCBSCEEE-EETTEE
T ss_pred             ecCCCCCcccCc-eEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEE---CCCCcc----ccccccEE-EECCEE
Confidence             22222111111 122 2366777777643       348889988754322   211111    01112222 235666


Q ss_pred             EEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----eEEEEEcCCceeE
Q 001311          955 FLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA-----TVCVFSAANLKLR 1018 (1102)
Q Consensus       955 l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg-----~I~vwd~~~~~~~ 1018 (1102)
                      ++.+ .+     ..+.+||..+.+....-.... ...-.+++ .-++++++.|+.++     .|.+||..+.+-.
T Consensus       208 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  280 (302)
T 2xn4_A          208 YAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM-CRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT  280 (302)
T ss_dssp             EEECCBSSSSBCCCEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEE
T ss_pred             EEECCCCCCcccceEEEEeCCCCCEeeCCCCCC-ccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCCeEE
Confidence            6664 32     479999998876554322111 11111222 23778888887664     4899999887654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.05  E-value=0.42  Score=51.44  Aligned_cols=188  Identities=10%  Similarity=0.016  Sum_probs=96.3

Q ss_pred             CCeEEEEEccCCCeEEEEE------------CCCeEEEEEccCCce-eeeEEEeec-----cccCEEEEEEcC--CCCee
Q 001311          409 VSVNRVIWSPDGSLFGVAY------------SRHIVQIYSYHGGDE-VRQHLEIDA-----HVGGVNDIAFSH--PNKQL  468 (1102)
Q Consensus       409 ~~V~~l~~spdg~~las~~------------~d~~v~vwd~~~~~~-~~~~~~l~~-----h~~~V~~v~~s~--d~~~~  468 (1102)
                      .....++..|+|..+++++            .+|.|.++|.++... ...+ .+.+     ..-....|.+.+  ++...
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            3456677888886666552            689999999984321 2222 2333     234567777765  45421


Q ss_pred             EEEEecC--CCcEEEEeCCCCe----eeEEeecC-CCCeEEEeeeecCCccEEEEEeC---C--------------CeEE
Q 001311          469 CVITCGD--DKTIKVWDATNGA----KQYIFEGH-EAPVYSVCPHHKENIQFIFSTAL---D--------------GKIK  524 (1102)
Q Consensus       469 ~l~s~~~--d~~i~vWd~~~~~----~~~~~~~h-~~~v~~v~~~~~~~~~~l~s~s~---d--------------g~i~  524 (1102)
                      +++.-..  +.+|.+|++..+.    .+..+.+. -...+.+.+.  ++|.+.++...   |              |.|.
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~--~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vy  206 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVT  206 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe--CCCCEEecCCcEeCCcccccchhhccCCccEEE
Confidence            3333222  5678888776532    12334432 2345666653  44455554431   1              2222


Q ss_pred             EEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCC-cceE--EEE
Q 001311          525 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDS-VQLL--TSI  600 (1102)
Q Consensus       525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~--~~~  600 (1102)
                      .+|.  ++ ...+                     ...-..-..++++|+++.++.+. ..+.|+.|++.. ++..  ..+
T Consensus       207 r~d~--~~-~~~~---------------------~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~  262 (355)
T 3sre_A          207 YYSP--ND-VRVV---------------------AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL  262 (355)
T ss_dssp             EECT--TC-CEEE---------------------EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             EEEC--Ce-EEEe---------------------ecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE
Confidence            2221  11 1000                     01112344567777776666654 578899999863 3321  223


Q ss_pred             cCCCCCCCcCeEEEcC-CCCEEEEEEC
Q 001311          601 DADGGLPASPRIRFNK-DGCLLAVSTN  626 (1102)
Q Consensus       601 ~~~~~~~~v~~~~~s~-~~~~l~~~~~  626 (1102)
                      ..   ....-.+++.+ +|.+.+++..
T Consensus       263 ~~---~g~PDGi~vD~e~G~lwva~~~  286 (355)
T 3sre_A          263 SF---DTLVDNISVDPVTGDLWVGCHP  286 (355)
T ss_dssp             EC---SSEEEEEEECTTTCCEEEEEES
T ss_pred             eC---CCCCceEEEeCCCCcEEEEecC
Confidence            21   12345677887 4777665543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.00  E-value=0.73  Score=50.13  Aligned_cols=59  Identities=10%  Similarity=-0.053  Sum_probs=31.8

Q ss_pred             eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC------eEEEEEcCCceeEEEeC
Q 001311          962 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA------TVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       962 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg------~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .+.+||+.+.+....-........  ..+..-++++++.|+.++      .|.++++++++.+....
T Consensus       286 ~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          286 STDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            578999887654332221111111  222334788888888653      46667999888876554

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.019  Score=61.20  Aligned_cols=199  Identities=8%  Similarity=0.033  Sum_probs=107.4

Q ss_pred             cEEEEEeCCCcEEEEEeecceeeeeeccc-cccceeEE---EecCCCEEEEE-cCCCcEEEEEcCCCcccceeeeecCCC
Q 001311          861 NIIAIGMDDSSIQIYNVRVDEVKSKLKGH-SKRITGLA---FSHALNVLVSS-GADSQLCVWSSDGWEKQKNRFLQIPTG  935 (1102)
Q Consensus       861 ~~lasg~~dg~v~vwd~~~~~~~~~l~~h-~~~V~~l~---~s~d~~~l~s~-s~Dg~i~vwd~~~~~~~~~~~~~~~~~  935 (1102)
                      .++++++.||.|+-+|..+|+.+-++... ..++....   ...++..++.. +.||.|..++..+|...-  .......
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~--~~~~~~l   88 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL--PLSIRQL   88 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE--EEEHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe--eeccccc
Confidence            47888999999999999999988887643 12222111   00123333333 589999999988764321  1111110


Q ss_pred             CCCCCCCCcEEEE------------ccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCC-----eeEEEEc-----C
Q 001311          936 RTPTAQSDTRVQF------------HQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAP-----ITHATFS-----C  993 (1102)
Q Consensus       936 ~~~~~~~v~~~~~------------spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~-----v~~l~~s-----p  993 (1102)
                      -     ...-+..            +.+|..++.+.++.+...|+.+|+.+..+....-...     ..|....     .
T Consensus        89 v-----~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~  163 (339)
T 2be1_A           89 V-----STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQE  163 (339)
T ss_dssp             H-----TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC-------------------
T ss_pred             e-----eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCccccccccccccccccccccc
Confidence            0     0011221            2445544457999999999999999988864321111     1111111     1


Q ss_pred             CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCccc
Q 001311          994 DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1072 (1102)
Q Consensus       994 d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1072 (1102)
                      .+..|+.+..+..+.+.+ .+|+ +..+....+.+... ...+. .....+. |+.+ +.++.||.|...|..++...|
T Consensus       164 ~~~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~-~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          164 CENMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL-DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             -CCEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT-THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             CCCeEEEecceEEEEEEC-CCCC-eEEEeccccccccc-ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence            245677777777777766 4554 22222111111110 00000 0000112 3445 557889999999999998888

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.93  E-value=0.71  Score=49.15  Aligned_cols=192  Identities=14%  Similarity=0.091  Sum_probs=98.8

Q ss_pred             EEecCCCeEEEEe-----C-------CeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCC--------C
Q 001311          813 ALSKNDSYVMSAS-----G-------GKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD--------S  870 (1102)
Q Consensus       813 ~~s~d~~~las~s-----d-------g~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d--------g  870 (1102)
                      +...+++.++.|+     +       ..+.+||..+.+-..  .+....... +++..  ++++++.|+.+        .
T Consensus        41 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~  117 (315)
T 4asc_A           41 LVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLF-GLGEA--LNSIYVVGGREIKDGERCLD  117 (315)
T ss_dssp             EECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESC-EEEEE--TTEEEEECCEESSTTCCBCC
T ss_pred             EEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhce-eEEEE--CCEEEEEeCCcCCCCCcccc
Confidence            3345667666665     1       127788887654321  121111111 22222  56777877743        4


Q ss_pred             cEEEEEeecce--eeeeeccccccceeEEEecCCCEEEEEcC-C-----CcEEEEEcCCCcccceeeeecCCCCCCCCCC
Q 001311          871 SIQIYNVRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGA-D-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS  942 (1102)
Q Consensus       871 ~v~vwd~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  942 (1102)
                      .+.+||..+.+  .+..+....  ....+...+++.++.|+. +     ..+.+||..+.+-..   +.....    +..
T Consensus       118 ~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~---~~~~p~----~r~  188 (315)
T 4asc_A          118 SVMCYDRLSFKWGESDPLPYVV--YGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE---LAPMQT----ARS  188 (315)
T ss_dssp             CEEEEETTTTEEEECCCCSSCC--BSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE---CCCCSS----CCB
T ss_pred             eEEEECCCCCcEeECCCCCCcc--cceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE---CCCCCC----chh
Confidence            68899987754  222222111  112222346777777776 2     358899988754221   111110    111


Q ss_pred             CcEEEEccCCcEEEEE-eCC-----eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC-----------
Q 001311          943 DTRVQFHQDQIHFLVV-HET-----QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDA----------- 1005 (1102)
Q Consensus       943 v~~~~~spdg~~l~~~-~d~-----~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg----------- 1005 (1102)
                      -..++ .-+++.++.+ .++     .+.+||..+.+....-.... ...-.+++ .-++++++.|+.++           
T Consensus       189 ~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~  265 (315)
T 4asc_A          189 LFGAT-VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQ-ERSSLSLV-SLVGTLYAIGGFATLETESGELVPT  265 (315)
T ss_dssp             SCEEE-EETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSS-CCBSCEEE-EETTEEEEEEEEEEEECTTSCEEEE
T ss_pred             ceEEE-EECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCC-cccceeEE-EECCEEEEECCccccCcCCcccccc
Confidence            12222 2366666664 332     68899998876554422111 11112222 22678888877642           


Q ss_pred             ---eEEEEEcCCceeEE
Q 001311         1006 ---TVCVFSAANLKLRC 1019 (1102)
Q Consensus      1006 ---~I~vwd~~~~~~~~ 1019 (1102)
                         .|.+||+.+.+-..
T Consensus       266 ~~~~v~~yd~~~~~W~~  282 (315)
T 4asc_A          266 ELNDIWRYNEEEKKWEG  282 (315)
T ss_dssp             EEEEEEEEETTTTEEEE
T ss_pred             ccCcEEEecCCCChhhh
Confidence               37788988876543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.91  E-value=1.5  Score=46.72  Aligned_cols=222  Identities=12%  Similarity=0.091  Sum_probs=112.4

Q ss_pred             CeEEEEEcCCCceee-eecCCCCCeeEEEEecCCCcEEEEEeC----CC-------cEEEEEeecceee--eeecccccc
Q 001311          827 GKISLFNMMTFKTMA-TFMPPPPAATFLAFHPQDNNIIAIGMD----DS-------SIQIYNVRVDEVK--SKLKGHSKR  892 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~-~~~~~~~~i~~l~~sp~d~~~lasg~~----dg-------~v~vwd~~~~~~~--~~l~~h~~~  892 (1102)
                      ..+..||..+.+-.. .+..........+... ++.+++.|+.    ++       .+.+||..+.+-.  ..+......
T Consensus        24 ~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~  102 (318)
T 2woz_A           24 TAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCL  102 (318)
T ss_dssp             SEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCS
T ss_pred             cceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccc
Confidence            358889988765433 1221122222333344 7788888883    12       1778887765432  222211111


Q ss_pred             ceeEEEecCCCEEEEEcCC-------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e-C---
Q 001311          893 ITGLAFSHALNVLVSSGAD-------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-E---  960 (1102)
Q Consensus       893 V~~l~~s~d~~~l~s~s~D-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~-d---  960 (1102)
                      -. ++. -+++.++.|+.+       ..+.+||..+.+-.   .+.....    ...-..++. .+++.++.+ . +   
T Consensus       103 ~~-~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~----~r~~~~~~~-~~~~iyv~GG~~~~~~  172 (318)
T 2woz_A          103 FG-LGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWS---EVKNLPI----KVYGHNVIS-HNGMIYCLGGKTDDKK  172 (318)
T ss_dssp             CE-EEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEE---EECCCSS----CEESCEEEE-ETTEEEEECCEESSSC
T ss_pred             cc-eEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEe---ECCCCCC----cccccEEEE-ECCEEEEEcCCCCCCC
Confidence            11 222 267777777754       24778888765422   1211110    011122222 566666664 2 2   


Q ss_pred             --CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeEEEeCCCcccCCCCCC
Q 001311          961 --TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSS 1033 (1102)
Q Consensus       961 --~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~~~gh~~ 1033 (1102)
                        ..+.+||..+.+....-.... ...-.+++. -++++++.|+.+     ..+.+||+.+.+-... .   .++.....
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~p~~r~~  246 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM-T---EFPQERSS  246 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEEC-C---CCSSCCBS
T ss_pred             ccceEEEEcCCCCEEEECCCCCC-CcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEEC-C---CCCCcccc
Confidence              369999998876544322111 111122222 267777777654     3577899888764432 1   12222111


Q ss_pred             CcccceEEEecCCCCCEEEEEecC--------------CcEEEEeccCCCccccc
Q 001311         1034 SNVHPLVIAAHPQEPNEFALGLSD--------------GGVHVFEPLESEGKWGV 1074 (1102)
Q Consensus      1034 ~~v~~~~v~f~p~d~~~l~s~~~D--------------g~v~vW~~~~~~~~~~~ 1074 (1102)
                      +     ++...  ++.+++.|+.+              ..+.+||+.+.+  |..
T Consensus       247 ~-----~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~  292 (318)
T 2woz_A          247 I-----SLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE--WAG  292 (318)
T ss_dssp             C-----EEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE--EEE
T ss_pred             e-----EEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE--ehh
Confidence            1     22222  46788887764              357778887755  543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.85  E-value=0.41  Score=59.90  Aligned_cols=236  Identities=13%  Similarity=0.130  Sum_probs=139.8

Q ss_pred             eEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec-ceeeeeecc
Q 001311          810 PCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV-DEVKSKLKG  888 (1102)
Q Consensus       810 ~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~  888 (1102)
                      .+..++|..+.+|.-...++.|||+.+.+.++...- ...|.--.|-.  .+.|+..+ +..|+-|++.. ..+.+.+.-
T Consensus        69 dsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR  144 (1630)
T 1xi4_A           69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR  144 (1630)
T ss_pred             hhhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhc
Confidence            445677888888877788999999998777766553 34566667764  45666555 56899999964 244445554


Q ss_pred             c----cccceeEEEecCCCEEEEEc-------CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEE---ccCCcE
Q 001311          889 H----SKRITGLAFSHALNVLVSSG-------ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF---HQDQIH  954 (1102)
Q Consensus       889 h----~~~V~~l~~s~d~~~l~s~s-------~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---spdg~~  954 (1102)
                      |    ...|..-..+++.+|++..|       -.|.+.+|+++.+.      -+..+||...-   ..+.+   .+....
T Consensus       145 ~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~~F---~~~~~~~~~~~~~l  215 (1630)
T 1xi4_A          145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAASF---AQFKMEGNAEESTL  215 (1630)
T ss_pred             chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHhhh---heeccCCCCCCceE
Confidence            4    35677777788999988554       24788999887643      33444443210   11111   111222


Q ss_pred             EEEEe----CCeEEEEEcCCc---e------Eeeeec-cCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEE
Q 001311          955 FLVVH----ETQLAIFETTKL---E------CVKQWV-PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCR 1020 (1102)
Q Consensus       955 l~~~~----d~~i~iwd~~~~---~------~~~~~~-~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~ 1020 (1102)
                      ++.+.    .+.++|-++...   .      .+..+. +..-.+-..++..|+.-..+...+.-|.|.+||+.||..+.+
T Consensus       216 ~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~  295 (1630)
T 1xi4_A          216 FCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYM  295 (1630)
T ss_pred             EEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhh
Confidence            22232    267888887432   1      111111 111234456777788878888888999999999999998865


Q ss_pred             eCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1021 INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1021 ~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      -+.    .    ...|.  ..+.....+ =++.....|.|.--.+.+..
T Consensus       296 ~ri----s----~~~iF--~~~~~~~~~-g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          296 NRI----S----GETIF--VTAPHEATA-GIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             ccc----c----CCceE--EeccCCCCC-ceEEEcCCceEEEEEEccch
Confidence            441    1    11133  222222122 23344467766666665544

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.75  E-value=0.82  Score=48.47  Aligned_cols=187  Identities=11%  Similarity=0.048  Sum_probs=97.8

Q ss_pred             CCCeEEEEeC----------CeEEEEEcCCCceeee--ecCCCCCeeEEEEecCCCcEEEEEeCC-----CcEEEEEeec
Q 001311          817 NDSYVMSASG----------GKISLFNMMTFKTMAT--FMPPPPAATFLAFHPQDNNIIAIGMDD-----SSIQIYNVRV  879 (1102)
Q Consensus       817 d~~~las~sd----------g~I~iwd~~~~~~~~~--~~~~~~~i~~l~~sp~d~~~lasg~~d-----g~v~vwd~~~  879 (1102)
                      ++++++.|+.          ..+.+||..+.+-...  +........++.+   ++++++.|+.+     ..+.+||..+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence            6666666542          3588999876543221  2211112222222   57788887644     3688899876


Q ss_pred             cee--eeeeccccccceeEEEecCCCEEEEEcCC-----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311          880 DEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD-----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       880 ~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  952 (1102)
                      .+-  +..+......-.++.  -++++++.|+.+     ..+.+||+.+.+-..   +.....    ...-..++.. ++
T Consensus       147 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~---~~~~p~----~r~~~~~~~~-~~  216 (308)
T 1zgk_A          147 DEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRM---ITAMNT----IRSGAGVCVL-HN  216 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEE---CCCCSS----CCBSCEEEEE-TT
T ss_pred             CeEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEee---CCCCCC----ccccceEEEE-CC
Confidence            542  222221111112222  267777777755     458899987754321   111111    1111222222 66


Q ss_pred             cEEEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeE
Q 001311          953 IHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLR 1018 (1102)
Q Consensus       953 ~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~ 1018 (1102)
                      +.++.+ .+     ..+.+||+.+.+....-.... ...-.+++. -++++++.|+.+     ..|.+||..+.+-.
T Consensus       217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH-RRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC-CccceEEEE-ECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            666664 32     579999998877654322111 111122222 267888888754     35788898877544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.70  E-value=2.2  Score=47.72  Aligned_cols=195  Identities=12%  Similarity=0.139  Sum_probs=114.8

Q ss_pred             cCCCeEEEEe--CCeEEEEEcCCCceeeeecC-CCCCeeEEEEe--cCCCcEEEEEeC-------CCcE---------EE
Q 001311          816 KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFH--PQDNNIIAIGMD-------DSSI---------QI  874 (1102)
Q Consensus       816 ~d~~~las~s--dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~s--p~d~~~lasg~~-------dg~v---------~v  874 (1102)
                      .||+||..-.  +..|...++...++-+.+.- ....+..+.|-  | +..|++.+++       ||..         .+
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence            5889999987  57788889988887665543 34567788876  5 5667766653       2221         11


Q ss_pred             EE---eecceeeeeeccccccceeEEEecCCCEEEEEcCCC---------------cEEEEEcCCC-------ccc--c-
Q 001311          875 YN---VRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDGW-------EKQ--K-  926 (1102)
Q Consensus       875 wd---~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---------------~i~vwd~~~~-------~~~--~-  926 (1102)
                      |.   ..+.+...++.- .+..-.+...++|++.++.+.+.               .+.++|+..-       +..  . 
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence            11   111111111110 12233345567788887766532               2556654321       110  0 


Q ss_pred             --eeeeecCC----CCC-----CCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceE-------------eeeeccC
Q 001311          927 --NRFLQIPT----GRT-----PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLEC-------------VKQWVPR  980 (1102)
Q Consensus       927 --~~~~~~~~----~~~-----~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~-------------~~~~~~~  980 (1102)
                        ..++....    +..     +.+.+...+.++|||++++++  .+.++.++|.+....             .....  
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--  375 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--  375 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence              11111111    000     112455789999999999995  577999999875211             12222  


Q ss_pred             CCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311          981 ESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       981 ~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                       -.......+|.++|.-..+--.|..|..|++...
T Consensus       376 -~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          376 -LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             -CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             -CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence             1456789999999955566668999999999764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.47  E-value=0.1  Score=50.88  Aligned_cols=146  Identities=13%  Similarity=0.016  Sum_probs=83.1

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCC--------eeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPA--------ATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~--------i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      .+..++|+|+|.+.++ .+|.++-.+..+.....-+. ....        -.++.|.| ++.+.++  .||.|+-++-.+
T Consensus        42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~-s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMG-RAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHH-HCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccc-cccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            5779999999998877 88887777664422211111 0112        47899999 8888887  569888777533


Q ss_pred             ceee------eee-ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccccee--eeecCCCCCCCCCCCcEEEEcc
Q 001311          880 DEVK------SKL-KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       880 ~~~~------~~l-~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      ...-      ..+ .+-=..+..|.|.|+|.+.+..  |+.+.-+...++......  ...+-.+..   ..-+.+.|++
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~---~~yr~l~f~~  191 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW---DTFKFLFFSS  191 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG---GGEEEEEECT
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc---ceEEEEEECC
Confidence            1111      011 1111457889999999888777  776543332221110000  000000000   1224567889


Q ss_pred             CCcEEEEEeCCeEE
Q 001311          951 DQIHFLVVHETQLA  964 (1102)
Q Consensus       951 dg~~l~~~~d~~i~  964 (1102)
                      +|...++. ++.++
T Consensus       192 ~G~l~~v~-~g~~Y  204 (236)
T 1tl2_A          192 VGTLFGVQ-GGKFY  204 (236)
T ss_dssp             TSCEEEEE-TTEEE
T ss_pred             CCcEEEEe-CCeEE
Confidence            98887777 66443

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=95.42  E-value=0.0037  Score=57.13  Aligned_cols=63  Identities=17%  Similarity=0.270  Sum_probs=53.2

Q ss_pred             hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC
Q 001311           60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD  123 (1102)
Q Consensus        60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~  123 (1102)
                      ++|.|+.|.||||+..| .++|..+|.+.-..+...+.+.+++|+.+....++.+++....++.
T Consensus        35 lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~   97 (148)
T 2j49_A           35 IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQS   97 (148)
T ss_dssp             HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHh
Confidence            99999999999999999 9999999987655555557888999999888888887777666655

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.42  E-value=1.2  Score=47.53  Aligned_cols=192  Identities=8%  Similarity=-0.002  Sum_probs=97.2

Q ss_pred             EecCCCeEEEEe-C----C-------eEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEeCC-------CcE
Q 001311          814 LSKNDSYVMSAS-G----G-------KISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGMDD-------SSI  872 (1102)
Q Consensus       814 ~s~d~~~las~s-d----g-------~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~~d-------g~v  872 (1102)
                      ...+++.++.|+ .    +       .+.+||..+.+-..  .+....... +++..  ++++++.|+.+       ..+
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF-GLGEV--DDKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC-EEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc-ceEEE--CCEEEEEcCccCCCCcccceE
Confidence            345677777665 1    1       17778877644322  122111122 22222  56788888764       357


Q ss_pred             EEEEeeccee--eeeeccccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCc
Q 001311          873 QIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  944 (1102)
Q Consensus       873 ~vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  944 (1102)
                      .+||..+.+-  +..+......  ..+...++++++.|+.+      ..+.+||+.+.+-.   .+.....    ...-.
T Consensus       130 ~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~p~----~r~~~  200 (318)
T 2woz_A          130 LCYDPVAAKWSEVKNLPIKVYG--HNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK---DLAPMKT----PRSMF  200 (318)
T ss_dssp             EEEETTTTEEEEECCCSSCEES--CEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE---EECCCSS----CCBSC
T ss_pred             EEEeCCCCCEeECCCCCCcccc--cEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE---ECCCCCC----Ccccc
Confidence            8888876542  2222211111  11222467777777642      35889998875432   2211111    01112


Q ss_pred             EEEEccCCcEEEEE-eC-----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC--------------
Q 001311          945 RVQFHQDQIHFLVV-HE-----TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-------------- 1004 (1102)
Q Consensus       945 ~~~~spdg~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-------------- 1004 (1102)
                      .++. -+++.++.+ .+     ..+.+||+.+.+....-........ .+++ .-++++++.|+.+              
T Consensus       201 ~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~  277 (318)
T 2woz_A          201 GVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS-ISLV-SLAGSLYAIGGFAMIQLESKEFAPTEV  277 (318)
T ss_dssp             EEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-CEEE-EETTEEEEECCBCCBC----CCBCCBC
T ss_pred             eEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-eEEE-EECCEEEEECCeeccCCCCceecccee
Confidence            2322 356666664 22     3578999988765443221111111 1222 2367777777754              


Q ss_pred             CeEEEEEcCCceeEEE
Q 001311         1005 ATVCVFSAANLKLRCR 1020 (1102)
Q Consensus      1005 g~I~vwd~~~~~~~~~ 1020 (1102)
                      ..+.+||+.+.+-...
T Consensus       278 ~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          278 NDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCEEEEETTTTEEEEE
T ss_pred             eeEEEEeCCCCEehhh
Confidence            3588889888765443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.23  E-value=0.17  Score=49.31  Aligned_cols=147  Identities=12%  Similarity=0.055  Sum_probs=84.1

Q ss_pred             CeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc--------ceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          849 AATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR--------ITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       849 ~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~--------V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      .++.++|+| ++.+.++  .+|.++-.+..+... ..+-+-...        -.++.|.++|.+.++  .||.|.-++-.
T Consensus        42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDN-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTT-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             cceeEEECC-CccEEEE--eCCeEEEECCCCCCc-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            678999999 8988877  678777666544211 111111112        478999999988888  56888877653


Q ss_pred             CCcccceee--eecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEe-----eeeccCCCCCCeeEEEEcC
Q 001311          921 GWEKQKNRF--LQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECV-----KQWVPRESSAPITHATFSC  993 (1102)
Q Consensus       921 ~~~~~~~~~--~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~-----~~~~~~~h~~~v~~l~~sp  993 (1102)
                      +.......-  ..+-.+.-   ..+..+.|.|+|.+.++. ++.++-....+....     .+...+.....-..+.|++
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw---~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~  191 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGW---SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS  191 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSG---GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred             cCCCCceeccccEeccCCC---CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence            322211100  00001000   256889999999999988 887644333221100     0111112233455577888


Q ss_pred             CCcEEEEEeCCCeE
Q 001311          994 DSQLVYACFLDATV 1007 (1102)
Q Consensus       994 d~~~l~s~s~Dg~I 1007 (1102)
                      ++.+.++.  +|.+
T Consensus       192 ~G~l~~v~--~g~~  203 (236)
T 1tl2_A          192 VGTLFGVQ--GGKF  203 (236)
T ss_dssp             TSCEEEEE--TTEE
T ss_pred             CCcEEEEe--CCeE
Confidence            88776655  6633

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.17  E-value=4.1  Score=43.44  Aligned_cols=113  Identities=15%  Similarity=0.128  Sum_probs=65.4

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC---CCe
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD---GSL  422 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd---g~~  422 (1102)
                      -...+.|+|.|||+ ++++--..|.|++++..+++......+             ..+.....+....|+|+||   +.+
T Consensus        31 L~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~-------------~~v~~~g~~GllGia~~Pdf~~~g~   96 (347)
T 3das_A           31 LNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV-------------PGVSPSGEGGLLGIALSPDYASDHM   96 (347)
T ss_dssp             CSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC-------------TTCCCBTTBSEEEEEECTTHHHHCE
T ss_pred             CCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc-------------CceeecCCCCceeeEeccccccCCE
Confidence            35679999999998 466655589999998766554221000             0122334567899999995   344


Q ss_pred             EEEE-E--CCCeEEEEEccCCc----e---eeeEE-Eee-ccccCEEEEEEcCCCCeeEEEEec
Q 001311          423 FGVA-Y--SRHIVQIYSYHGGD----E---VRQHL-EID-AHVGGVNDIAFSHPNKQLCVITCG  474 (1102)
Q Consensus       423 las~-~--~d~~v~vwd~~~~~----~---~~~~~-~l~-~h~~~V~~v~~s~d~~~~~l~s~~  474 (1102)
                      |... +  .+..|.-|.+..+.    .   .+.+. .+. +....-..|+|.|||.  +.++.+
T Consensus        97 lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G  158 (347)
T 3das_A           97 VYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG  158 (347)
T ss_dssp             EEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred             EEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence            4432 2  34566667665521    1   11111 121 1112346799999997  555543

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.01  E-value=0.2  Score=53.31  Aligned_cols=116  Identities=10%  Similarity=0.077  Sum_probs=67.6

Q ss_pred             EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEE-ECCCeEEEEEccC
Q 001311          361 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVA-YSRHIVQIYSYHG  439 (1102)
Q Consensus       361 llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~-~~d~~v~vwd~~~  439 (1102)
                      +++.++.||.|.-.|..+|+.+-.....  ..   ....   ...+...       ..++..++.. +.||.|..++..+
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~--~~---~p~~---~~~~~~~-------~~~~~~~vv~p~~dG~l~a~~~~~   76 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPE--NF---QPLI---EIQEPSR-------LETYETLIIEPFGDGNIYYFNAHQ   76 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGG--GS---CCSE---ECCCSCT-------TTSSEEEEECCSTTTEEEEEETTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCC--cc---CCcE---EecCCcc-------ccCCcEEEEEECCCCEEEEEECCC
Confidence            5889999999999999999987642211  00   0000   0001110       0133333333 5789999999887


Q ss_pred             CceeeeEEEeec--cccCEEE---EEE------cCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec
Q 001311          440 GDEVRQHLEIDA--HVGGVND---IAF------SHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG  495 (1102)
Q Consensus       440 ~~~~~~~~~l~~--h~~~V~~---v~~------s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~  495 (1102)
                      |...... ....  ...++..   ...      +.++   .+++|+.++.+...|+.+|+.+..+..
T Consensus        77 G~~~~~~-~~~~lv~~SP~~~~~~pvv~~~~~~~~~g---~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           77 GLQKLPL-SIRQLVSTSPLHLKTNIVVNDSGKIVEDE---KVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             EEEEEEE-EHHHHHTTCSEEEECC----------CCE---EEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             CcEEeee-ccccceeccccccCCCceeecccccccCC---EEEEEecCCEEEEEECCCCcEEEEEec
Confidence            7433211 1111  1112221   000      1233   589999999999999999999998863

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.73  E-value=4.9  Score=42.10  Aligned_cols=172  Identities=14%  Similarity=0.094  Sum_probs=98.2

Q ss_pred             ecCCCeEEEEe---CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC--------------CcEEEEEe
Q 001311          815 SKNDSYVMSAS---GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD--------------SSIQIYNV  877 (1102)
Q Consensus       815 s~d~~~las~s---dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d--------------g~v~vwd~  877 (1102)
                      +.++.+|....   ++.|...+..... ...+..    -.+--+++ ++.+|+.....              ..|+..++
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~~l~~----~~~~~i~~-~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSN-IHKLSN----DTAMYINA-DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCS-CEEEEE----EEEEEEEE-CSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCC-CEEccC----CceeeEEE-cCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            45777777664   4677777765433 333321    12345677 67777766543              35666666


Q ss_pred             ecceeeeeeccccccceeEEEecCCCEEEEEc--CCC--cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCc
Q 001311          878 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQI  953 (1102)
Q Consensus       878 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~  953 (1102)
                      ...+ ...+...    .+..|++++++|+-..  .++  .|..-++++...  ..+..   .      .+  .+|+++|+
T Consensus        96 dg~~-~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~--~~lt~---~------~~--~~~~~~g~  157 (302)
T 3s25_A           96 NGHG-STVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK--KKIKN---H------YL--FTCNTSDR  157 (302)
T ss_dssp             TSCC-CEEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC--EEEES---S------CC--CCSEEETT
T ss_pred             CCCc-ceEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe--EEEeC---C------Cc--eEeeEECC
Confidence            5544 2233211    1236788999988765  334  455555554322  11211   1      11  35688999


Q ss_pred             EEEEEe--CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC--CeEEEEEcCCce
Q 001311          954 HFLVVH--ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD--ATVCVFSAANLK 1016 (1102)
Q Consensus       954 ~l~~~~--d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D--g~I~vwd~~~~~ 1016 (1102)
                      .|.-..  ...|...++..+.....+.     +... ..+.|++++|+-...+  ..|..-+++...
T Consensus       158 ~iy~t~~g~~~Iy~~~l~g~~~~~l~~-----~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          158 YFYYNNPKNGQLYRYDTASQSEALFYD-----CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             EEEEECTTTCCEEEEETTTTEEEEEEC-----SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC
T ss_pred             EEEEEeCCCceEEEEECCCCCEEEEeC-----CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC
Confidence            988754  4678888887776554432     1222 3466999998876644  356666666554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.62  E-value=0.93  Score=56.83  Aligned_cols=246  Identities=9%  Similarity=0.095  Sum_probs=134.7

Q ss_pred             EEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCe
Q 001311          352 MDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHI  431 (1102)
Q Consensus       352 v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~  431 (1102)
                      .-.+|..+ ++|.=. ..++.|+|+++.+.+....+                    ...|..=.|-.+.. |+..+ +..
T Consensus        71 AIMnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~~a  126 (1630)
T 1xi4_A           71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DNA  126 (1630)
T ss_pred             hccCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCe-eEEEc-CCe
Confidence            34566665 344433 57899999998877654221                    23565556654443 33332 356


Q ss_pred             EEEEEccCCceeeeEEEeecc----ccCEEEEEEcCCCCeeEEEEec------CCCcEEEEeCCCCeeeEEeecCCCCeE
Q 001311          432 VQIYSYHGGDEVRQHLEIDAH----VGGVNDIAFSHPNKQLCVITCG------DDKTIKVWDATNGAKQYIFEGHEAPVY  501 (1102)
Q Consensus       432 v~vwd~~~~~~~~~~~~l~~h----~~~V~~v~~s~d~~~~~l~s~~------~d~~i~vWd~~~~~~~~~~~~h~~~v~  501 (1102)
                      |.-|++.+.....+  .+.-|    ...|..-.-+++.+. ++++|=      -.|.+.++.++. +..+.+.||.+...
T Consensus       127 VyHW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW-~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~  202 (1630)
T 1xi4_A          127 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFA  202 (1630)
T ss_pred             EEEeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCe-EEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhh
Confidence            99999975332211  23233    346777778888885 333332      457888888654 33456677766554


Q ss_pred             EEeeeecCCccEEEE-EeC---CCeEEEEEcCCC-CCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311          502 SVCPHHKENIQFIFS-TAL---DGKIKAWLYDNL-GSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  576 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s-~s~---dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  576 (1102)
                      .+.+...+....+++ +..   .+.+++-++... .....+   ......+.|.|+..       .....++.+++.-..
T Consensus       203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f---~kk~~~~~~~~~~~-------~Dfpv~~~vs~k~g~  272 (1630)
T 1xi4_A          203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF---PKKAVDVFFPPEAQ-------NDFPVAMQISEKHDV  272 (1630)
T ss_pred             eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCC---ccccccccCCcccc-------cCcceEEEeccccCE
Confidence            443321121122222 221   267888887553 111111   11233445555432       223445667777778


Q ss_pred             EEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccC
Q 001311          577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSD  637 (1102)
Q Consensus       577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~  637 (1102)
                      +...+.-|.|.+||+.++.++..-.....  .|...+......-++.....|.|.-..+..
T Consensus       273 iy~itk~G~~~~~d~~t~~~i~~~ris~~--~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~  331 (1630)
T 1xi4_A          273 VFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (1630)
T ss_pred             EEEEecCceEEEEecccchhhhhccccCC--ceEEeccCCCCCceEEEcCCceEEEEEEcc
Confidence            88899999999999999998766543332  233233333222333334556555544433

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.60  E-value=2.8  Score=47.04  Aligned_cols=109  Identities=10%  Similarity=0.083  Sum_probs=62.3

Q ss_pred             cceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC--CCCCCCcEEEEccC---CcEEEEE--e-----
Q 001311          892 RITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQD---QIHFLVV--H-----  959 (1102)
Q Consensus       892 ~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~spd---g~~l~~~--~-----  959 (1102)
                      ..++|+|.|||+++++--..+.|++++..++...  .+..+.....  ........++|+||   +.+|.++  .     
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~--~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVK--TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE--EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe--EEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4578999999998887655457888876544322  1222221110  11245679999995   5555443  2     


Q ss_pred             -------CCeEEEEEcCCc-------eEee-eeccCCCCCCeeEEEEcCCCcEEEEEeC
Q 001311          960 -------ETQLAIFETTKL-------ECVK-QWVPRESSAPITHATFSCDSQLVYACFL 1003 (1102)
Q Consensus       960 -------d~~i~iwd~~~~-------~~~~-~~~~~~h~~~v~~l~~spd~~~l~s~s~ 1003 (1102)
                             ...|.-|+...+       +.+. .+. .........|+|.|||.++++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p-~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLP-SSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEEC-CCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCC-CCCCCCCCeEeECCCCeEEEEECC
Confidence                   234555554321       1111 122 121234789999999998777654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.11  E-value=4  Score=48.84  Aligned_cols=197  Identities=11%  Similarity=0.077  Sum_probs=105.5

Q ss_pred             cCCCeEEEEe-C----CeEEEEEcCCCceeeee-c-------CCCCCeeEEEEecCCCcEEEEEeCCC------cEEEEE
Q 001311          816 KNDSYVMSAS-G----GKISLFNMMTFKTMATF-M-------PPPPAATFLAFHPQDNNIIAIGMDDS------SIQIYN  876 (1102)
Q Consensus       816 ~d~~~las~s-d----g~I~iwd~~~~~~~~~~-~-------~~~~~i~~l~~sp~d~~~lasg~~dg------~v~vwd  876 (1102)
                      .++..++.|+ +    ..+.+||..+.+-...- .       .......++.+.. ++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            5666666665 3    35889998775533222 1       1112233444432 567888887543      578899


Q ss_pred             eecce--eeeeeccccccceeEEEecCCCEEEEEcCCC--cEEEEEcCCCcccceeeeecCCCCCCCC-CCCcEEEEccC
Q 001311          877 VRVDE--VKSKLKGHSKRITGLAFSHALNVLVSSGADS--QLCVWSSDGWEKQKNRFLQIPTGRTPTA-QSDTRVQFHQD  951 (1102)
Q Consensus       877 ~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~spd  951 (1102)
                      ..+.+  .+..+...... .+++...+++.++.||.++  .+.+||..+..-   ..+.. .+..+.. .....+.+..+
T Consensus       475 ~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W---~~~~~-~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIF---KDVTP-KDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             TTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEE---EECCC-SSGGGGSCCBSCEEEEETT
T ss_pred             CCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCce---EEccC-CCCCCCcccceeEEEEeCC
Confidence            87743  23222211111 1222224788888888655  689999887542   22221 0000000 12234566665


Q ss_pred             -CcEEEEE-e--C-----CeEEEEEcCCce------EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC--------CeEE
Q 001311          952 -QIHFLVV-H--E-----TQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLD--------ATVC 1008 (1102)
Q Consensus       952 -g~~l~~~-~--d-----~~i~iwd~~~~~------~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D--------g~I~ 1008 (1102)
                       ++.++.| .  +     +.+.+||+.+..      .............-.+++...++++++.|+.+        ..|.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             5666664 3  2     468999998877      22211100011111233334447888888743        4599


Q ss_pred             EEEcCCceeE
Q 001311         1009 VFSAANLKLR 1018 (1102)
Q Consensus      1009 vwd~~~~~~~ 1018 (1102)
                      +||..+++-.
T Consensus       630 ~yd~~t~~W~  639 (695)
T 2zwa_A          630 SLDPLSETLT  639 (695)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999988765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=92.28  E-value=14  Score=39.53  Aligned_cols=163  Identities=10%  Similarity=0.141  Sum_probs=92.7

Q ss_pred             CCCeeEEEEecCCCeEEEEEe-------------cCCeEEEEeCCCC--eeEEeeeeeeeccCCCCccccccccCCCCCC
Q 001311          346 GSSPMSMDFHPVQQTLLLVGT-------------NVGDIGLWEVGSR--ERLVLRNFKVWDLGACSMPLQAALVKDPGVS  410 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~-------------~d~~i~iWd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  410 (1102)
                      ......+++.|+|.  +.+++             .+|.|.++|.++.  +.. .  +.+-.     .     .+......
T Consensus        49 ~~G~EDi~~~~~G~--~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~-~--l~~~g-----~-----~~~~~~f~  113 (355)
T 3sre_A           49 DNGSEDLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-E--LEIIG-----N-----TLDISSFN  113 (355)
T ss_dssp             CSCCCEEEECTTSE--EEEEECCC-----------CCEEEEEETTSSSCCEE-E--CEEEC-----S-----SCCGGGCC
T ss_pred             CCCcceeEEcCCCe--EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceE-E--EEccC-----C-----CCCcCcee
Confidence            34667888899886  34443             6899999998742  221 1  11100     0     01112235


Q ss_pred             eEEEEEcc--CCC-eEEEEE-C--CCeEEEEEccCCc-eeeeEEEeecc-ccCEEEEEEcCCCCeeEEEEec--------
Q 001311          411 VNRVIWSP--DGS-LFGVAY-S--RHIVQIYSYHGGD-EVRQHLEIDAH-VGGVNDIAFSHPNKQLCVITCG--------  474 (1102)
Q Consensus       411 V~~l~~sp--dg~-~las~~-~--d~~v~vwd~~~~~-~~~~~~~l~~h-~~~V~~v~~s~d~~~~~l~s~~--------  474 (1102)
                      ...+.+.+  +|+ +|.++. .  +.+|.||+++.+. ......++.+. -...+.+++.++|.  +.++..        
T Consensus       114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~--fyvt~~~~ftd~~~  191 (355)
T 3sre_A          114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYL  191 (355)
T ss_dssp             EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCSSHHH
T ss_pred             eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC--EEecCCcEeCCccc
Confidence            66677766  454 455442 2  5688999887643 23333334332 23578999999998  566643        


Q ss_pred             ---------CCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEE-eCCCeEEEEEcCC
Q 001311          475 ---------DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST-ALDGKIKAWLYDN  530 (1102)
Q Consensus       475 ---------~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~-s~dg~i~~wd~~~  530 (1102)
                               ..+.|..+|.  ++. ..+...-..-+.++|+  +|++.++.+ +..+.|..|+++.
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~l~~pNGia~s--pDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--NDV-RVVAEGFDFANGINIS--PDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TCC-EEEEEEESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECT
T ss_pred             ccchhhccCCccEEEEEEC--CeE-EEeecCCcccCcceEC--CCCCEEEEEeCCCCeEEEEEECC
Confidence                     1244555554  433 2332233456788885  555555554 5678999999874

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.62  E-value=8.7  Score=39.74  Aligned_cols=223  Identities=13%  Similarity=0.076  Sum_probs=113.6

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  887 (1102)
                      .|..++....- .++.. ||.|+.|-....-.+..-......|..++...  ...++. . ||.|+.|-....-.+..-.
T Consensus        25 ~i~~ia~G~~h-~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~   98 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA   98 (282)
T ss_dssp             SCCEEEECSSE-EEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred             CCcEEEeCCCe-EEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence            46666655432 33333 88899998664332221111233577777754  344554 5 9999999865422111111


Q ss_pred             cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001311          888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  967 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd  967 (1102)
                      .-...|..|+...+.  .+... ||.|..|-......... ...       ....|..++...+  +.++-.|+.|+.|-
T Consensus        99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~-~~~-------~~~~i~~i~~G~~--~~~~l~~G~v~~wG  165 (282)
T 3qhy_B           99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTV-PAE-------AQSGVTALDGGVY--TALAVKNGGVIAWG  165 (282)
T ss_dssp             GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSC-CGG-------GGSSEEEEEECSS--EEEEEETTEEEEEE
T ss_pred             ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCC-Ccc-------CCCCeEEEEcccC--EEEEEECCEEEEec
Confidence            112457777766443  33334 89999997654322110 000       0123444444333  22222388898887


Q ss_pred             cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCC
Q 001311          968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQE 1047 (1102)
Q Consensus       968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d 1047 (1102)
                      ......+....  .-...|..++...+.. ++.  .||.|+.|-....-.+.       .+.. ....+.  .|+-..  
T Consensus       166 ~n~~gqlg~p~--~~~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg-------~p~~-~~~~v~--~i~~G~--  228 (282)
T 3qhy_B          166 DNYFGQTTVPA--EAQSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTT-------VPTE-ALSGVS--AIASGE--  228 (282)
T ss_dssp             CCTTSTTSCCG--GGGSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTC-------CCGG-GGSSCC--EEEECS--
T ss_pred             CCCCCCCCCce--ecCCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCC-------CCcc-cCCCce--EEEcCC--
Confidence            65432222111  1134677777654433 333  59999999765432221       1100 011133  454432  


Q ss_pred             CCEEEEEecCCcEEEEeccCC
Q 001311         1048 PNEFALGLSDGGVHVFEPLES 1068 (1102)
Q Consensus      1048 ~~~l~s~~~Dg~v~vW~~~~~ 1068 (1102)
                      ...++..  ||.|+.|=-...
T Consensus       229 ~h~~al~--~g~v~~wG~n~~  247 (282)
T 3qhy_B          229 WYSLALK--NGKVIAWGSSRT  247 (282)
T ss_dssp             SCEEEEE--TTEEEEESTTCC
T ss_pred             CEEEEEE--CCEEEEecCCCC
Confidence            2344444  999999976554

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=90.90  E-value=21  Score=38.93  Aligned_cols=260  Identities=10%  Similarity=0.033  Sum_probs=117.2

Q ss_pred             CCCeeEEEEec--CCCeEEEEeCC----eEEEEEcCCCceeeeec------C--------CCCCeeEEEEecCC-CcEEE
Q 001311          806 EEAVPCFALSK--NDSYVMSASGG----KISLFNMMTFKTMATFM------P--------PPPAATFLAFHPQD-NNIIA  864 (1102)
Q Consensus       806 ~~~i~~l~~s~--d~~~las~sdg----~I~iwd~~~~~~~~~~~------~--------~~~~i~~l~~sp~d-~~~la  864 (1102)
                      ...|.+|+++|  ++.+.+.+..|    .|...+ ..++.-..+.      .        ....|.++++.|.+ ...|.
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~  132 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY  132 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence            45689999998  55555555454    444332 2222211111      1        11247788998733 44555


Q ss_pred             EEeCCCcEEEEEee--cceeeeeecc----------------ccccceeEEEecC-CCEEEEEcCCCcEEEEEcCCCccc
Q 001311          865 IGMDDSSIQIYNVR--VDEVKSKLKG----------------HSKRITGLAFSHA-LNVLVSSGADSQLCVWSSDGWEKQ  925 (1102)
Q Consensus       865 sg~~dg~v~vwd~~--~~~~~~~l~~----------------h~~~V~~l~~s~d-~~~l~s~s~Dg~i~vwd~~~~~~~  925 (1102)
                      .++..+.|+..+-.  +.+.+..+..                ....|.+|.+.|. ...|..+..++.|...+ +.++. 
T Consensus       133 ~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t-  210 (394)
T 3b7f_A          133 AGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD-  210 (394)
T ss_dssp             EEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS-
T ss_pred             EEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC-
Confidence            56556655544211  1122211111                1235778999873 33444444344344332 22221 


Q ss_pred             ceeeeec-CCC-CCC-----CCCCCcEEEEccC-CcEEEEEeCCeEEEEEcCCceEeeeeccCCCC---CCeeEEEEcC-
Q 001311          926 KNRFLQI-PTG-RTP-----TAQSDTRVQFHQD-QIHFLVVHETQLAIFETTKLECVKQWVPRESS---APITHATFSC-  993 (1102)
Q Consensus       926 ~~~~~~~-~~~-~~~-----~~~~v~~~~~spd-g~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~---~~v~~l~~sp-  993 (1102)
                       ...... ... ..+     ....+..++++|+ ...|.++..+.|...+-. ++.-..+...-..   ..+.+++++| 
T Consensus       211 -W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~  288 (394)
T 3b7f_A          211 -WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQR  288 (394)
T ss_dssp             -CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred             -ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCC
Confidence             111111 000 000     0124678899886 355555655655554422 3222222210111   3467788876 


Q ss_pred             CCcEEEEEeC-----------CCeEEEEEcCC-ceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEE
Q 001311          994 DSQLVYACFL-----------DATVCVFSAAN-LKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVH 1061 (1102)
Q Consensus       994 d~~~l~s~s~-----------Dg~I~vwd~~~-~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~ 1061 (1102)
                      +...|..+..           ++...||.... |+.-..+.  .-++....-..+....++++|.++..|..++.++.| 
T Consensus       289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l-  365 (394)
T 3b7f_A          289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI-  365 (394)
T ss_dssp             CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE-
T ss_pred             CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE-
Confidence            3333444432           33345565544 34333332  112221000001112577887666667777666664 


Q ss_pred             EEeccCCCccccc
Q 001311         1062 VFEPLESEGKWGV 1074 (1102)
Q Consensus      1062 vW~~~~~~~~~~~ 1074 (1102)
                       |.-..+...|..
T Consensus       366 -~~S~D~G~tW~~  377 (394)
T 3b7f_A          366 -WASADEGEHWQC  377 (394)
T ss_dssp             -EEESSTTSBCEE
T ss_pred             -EEECCCCCCceE
Confidence             444444445554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=90.06  E-value=20  Score=37.36  Aligned_cols=175  Identities=12%  Similarity=0.143  Sum_probs=102.1

Q ss_pred             EEEecCCCeEEEEe-C--------------CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe--CCCcEEE
Q 001311          812 FALSKNDSYVMSAS-G--------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM--DDSSIQI  874 (1102)
Q Consensus       812 l~~s~d~~~las~s-d--------------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~--~dg~v~v  874 (1102)
                      --++++|.+|+... .              ..|+..++...+......   .  .+.+|++ ++++|+...  .++.-.|
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~--~~~~~s~-~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---D--PCIYASL-IGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---S--CEEEEEE-ETTEEEEEEESSSSCEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---C--CccEEEE-eCCEEEEEeecCCCCceE
Confidence            45678999888776 2              257777777655333222   1  2336788 677777665  3444444


Q ss_pred             EEeec-ceeeeeeccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311          875 YNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       875 wd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  952 (1102)
                      |.+.. +.....+..+..    .+|+++++.|.-.+. ..+|.+-++.++...  .+   ..+.       ....++|++
T Consensus       132 y~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~--~l---~~~~-------~~~~~~P~g  195 (302)
T 3s25_A          132 YRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEA--LF---YDCN-------CYKPVVLDD  195 (302)
T ss_dssp             EEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEE--EE---ECSC-------EEEEEEEET
T ss_pred             EEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEE--EE---eCCC-------ccceeeecC
Confidence            44432 334455544432    457888988886655 567888888775431  11   1221       223467999


Q ss_pred             cEEEEEe--C-CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeC--CCeEEEEEcCCc
Q 001311          953 IHFLVVH--E-TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL--DATVCVFSAANL 1015 (1102)
Q Consensus       953 ~~l~~~~--d-~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~--Dg~I~vwd~~~~ 1015 (1102)
                      .+|+-..  + ..|..-++....... +.    ...+  ..|+|++++|+-++.  .+.|..-+++..
T Consensus       196 ~~iy~t~~~~~~~I~~~~ldG~~~~~-Lt----~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          196 TNVYYMDVNRDNAIVHVNINNPNPVV-LT----EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             TEEEEEEGGGTTEEEEECSSSCCCEE-CS----CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CEEEEEEcCCCcEEEEEECCCCCeEE-Ee----CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            9988742  2 356666766555332 22    2233  347888998876643  356666666543

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=89.90  E-value=10  Score=45.18  Aligned_cols=198  Identities=11%  Similarity=0.056  Sum_probs=104.0

Q ss_pred             CCcEEEEEeCC----CcEEEEEeecceeeeee-c-----cccccc-eeEEEec-CCCEEEEEcCCC------cEEEEEcC
Q 001311          859 DNNIIAIGMDD----SSIQIYNVRVDEVKSKL-K-----GHSKRI-TGLAFSH-ALNVLVSSGADS------QLCVWSSD  920 (1102)
Q Consensus       859 d~~~lasg~~d----g~v~vwd~~~~~~~~~l-~-----~h~~~V-~~l~~s~-d~~~l~s~s~Dg------~i~vwd~~  920 (1102)
                      ++.+++.|+.+    ..+.+||..+++-...- .     ...... .+++... +++.++.||.++      .+.+||..
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~  476 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMK  476 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETT
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCC
Confidence            66777777754    46888998775422211 1     111111 1233333 777888887543      47888888


Q ss_pred             CCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC--CeEEEEEcCCceEeeeec---cCCCCCCeeEEEEcCC
Q 001311          921 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE--TQLAIFETTKLECVKQWV---PRESSAPITHATFSCD  994 (1102)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d--~~i~iwd~~~~~~~~~~~---~~~h~~~v~~l~~spd  994 (1102)
                      +.+-..   +....    .+..-..++.-.+++.++.| .+  +.+.+||..+.+....-.   .........++.+..+
T Consensus       477 t~~W~~---~~~~p----~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~  549 (695)
T 2zwa_A          477 TREWSM---IKSLS----HTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV  549 (695)
T ss_dssp             TTEEEE---CCCCS----BCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred             CCcEEE---CCCCC----CCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence            753221   11111    01122333443477777774 32  279999999877654321   0011122233555555


Q ss_pred             -CcEEEEEeC--C-----CeEEEEEcCCcee-----EEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC----
Q 001311          995 -SQLVYACFL--D-----ATVCVFSAANLKL-----RCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---- 1057 (1102)
Q Consensus       995 -~~~l~s~s~--D-----g~I~vwd~~~~~~-----~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D---- 1057 (1102)
                       +++++.|+.  +     ..+.+||+.+..-     -..+......+..  .+     ++.... ++.+++.|+.+    
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~--~~-----~~~~~~-~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY--GS-----QIKYIT-PRKLLIVGGTSPSGL  621 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCB--SC-----EEEEEE-TTEEEEECCBCSSCC
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcc--cc-----eEEEeC-CCEEEEECCccCCCC
Confidence             777777775  2     4589999988871     1111110001110  11     222222 26788888753    


Q ss_pred             ----CcEEEEeccCCCcccc
Q 001311         1058 ----GGVHVFEPLESEGKWG 1073 (1102)
Q Consensus      1058 ----g~v~vW~~~~~~~~~~ 1073 (1102)
                          ..|.++|+.+.+  |.
T Consensus       622 ~~~~~~v~~yd~~t~~--W~  639 (695)
T 2zwa_A          622 FDRTNSIISLDPLSET--LT  639 (695)
T ss_dssp             CCTTTSEEEEETTTTE--EE
T ss_pred             CCCCCeEEEEECCCCe--EE
Confidence                468899987765  55

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=89.32  E-value=26  Score=37.64  Aligned_cols=155  Identities=8%  Similarity=0.085  Sum_probs=87.1

Q ss_pred             eEEEEEcCCC--ceeeeecCC------CCCeeEEEEe---cC---CCcEEEEEe-CCCcEEEEEeecceeeeeecccccc
Q 001311          828 KISLFNMMTF--KTMATFMPP------PPAATFLAFH---PQ---DNNIIAIGM-DDSSIQIYNVRVDEVKSKLKGHSKR  892 (1102)
Q Consensus       828 ~I~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---p~---d~~~lasg~-~dg~v~vwd~~~~~~~~~l~~h~~~  892 (1102)
                      +|.+||+.+.  +.++++.-.      .+....+++.   |.   ++.++...+ ..+-|.|||+.+++..+.+..+   
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~---  200 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT---  200 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence            5777888887  777665422      3457788887   21   134444444 4678999999998876665321   


Q ss_pred             ceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC----CcEEEEEeCCeEEEEEc
Q 001311          893 ITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD----QIHFLVVHETQLAIFET  968 (1102)
Q Consensus       893 V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd----g~~l~~~~d~~i~iwd~  968 (1102)
                           |.|+.....+.  +|.-..|.                      ..+..+++||+    ++.|....=..-++|.+
T Consensus       201 -----~~pd~~~~~~i--~G~~~~~~----------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V  251 (381)
T 3q6k_A          201 -----FKAERPTKFDY--GGKEYEFK----------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSV  251 (381)
T ss_dssp             -----GSCCSCEEEEE--TTEEEEEC----------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEEE
T ss_pred             -----CccccCcceEE--CCEEeEec----------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEEE
Confidence                 34441111111  22222221                      15678888887    77777653333334443


Q ss_pred             CC-----c---eEeeeeccCCCCCCeeEEEEc-CCCcEEEEEeCCCeEEEEEcCC
Q 001311          969 TK-----L---ECVKQWVPRESSAPITHATFS-CDSQLVYACFLDATVCVFSAAN 1014 (1102)
Q Consensus       969 ~~-----~---~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~Dg~I~vwd~~~ 1014 (1102)
                      .+     .   ..+..+...+....-..+++. .+|.++++--....|..|+..+
T Consensus       252 ~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          252 NTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             EHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred             EHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence            32     1   111222111112334456775 6787778778889999999876

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=89.19  E-value=22  Score=36.61  Aligned_cols=184  Identities=8%  Similarity=0.007  Sum_probs=96.3

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  887 (1102)
                      .|..++...+-.. +. .||.|+.|-....-.+..-..-...|..++...  ...++ -. ||.|+.|-......+....
T Consensus        64 ~i~~ia~G~~hs~-~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~--~hs~a-l~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHSL-AL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA--WASYA-LK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEEE-EE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET--TEEEE-EE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEEE-EE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC--CEEEE-Ee-CCeEEEecCCCCCcCCCCc
Confidence            4666666544333 33 488888888664322221111134677777764  33333 45 9999999865422222111


Q ss_pred             cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001311          888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  967 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd  967 (1102)
                      .....|..|+...+.  .+... ||.|..|-......... +...       ...|..++...+... +. .++.|+.|-
T Consensus       138 ~~~~~i~~i~~G~~~--~~~l~-~G~v~~wG~n~~gqlg~-p~~~-------~~~v~~i~~G~~hs~-al-~~G~v~~wG  204 (282)
T 3qhy_B          138 EAQSGVTALDGGVYT--ALAVK-NGGVIAWGDNYFGQTTV-PAEA-------QSGVDDVAGGIFHSL-AL-KDGKVIAWG  204 (282)
T ss_dssp             GGGSSEEEEEECSSE--EEEEE-TTEEEEEECCTTSTTSC-CGGG-------GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred             cCCCCeEEEEcccCE--EEEEE-CCEEEEecCCCCCCCCC-ceec-------CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence            223457666664433  22233 79999997654322110 0000       124555555444333 33 789999997


Q ss_pred             cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc
Q 001311          968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANL 1015 (1102)
Q Consensus       968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~ 1015 (1102)
                      ......+..-.  .....|..++-..+...+++   ||.|+.|-....
T Consensus       205 ~n~~gqlg~p~--~~~~~v~~i~~G~~h~~al~---~g~v~~wG~n~~  247 (282)
T 3qhy_B          205 DNRYKQTTVPT--EALSGVSAIASGEWYSLALK---NGKVIAWGSSRT  247 (282)
T ss_dssp             CCTTSTTCCCG--GGGSSCCEEEECSSCEEEEE---TTEEEEESTTCC
T ss_pred             CCCCCCCCCCc--ccCCCceEEEcCCCEEEEEE---CCEEEEecCCCC
Confidence            65432222111  11345777776544433333   999999976543

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=88.46  E-value=36  Score=40.37  Aligned_cols=236  Identities=13%  Similarity=0.127  Sum_probs=122.2

Q ss_pred             eEEE-EecCCCeEEEEe--C----CeEEEEEcCCCceeee-ecCCCC--------CeeEEEEecCCCcEEEEEe------
Q 001311          810 PCFA-LSKNDSYVMSAS--G----GKISLFNMMTFKTMAT-FMPPPP--------AATFLAFHPQDNNIIAIGM------  867 (1102)
Q Consensus       810 ~~l~-~s~d~~~las~s--d----g~I~iwd~~~~~~~~~-~~~~~~--------~i~~l~~sp~d~~~lasg~------  867 (1102)
                      ..+. ++||+++++.+-  +    ..++++|+.+++.+.. +. ...        ....++|.. +..++++..      
T Consensus       132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~-~~~k~~~~~~~~~~~~~W~d-~~~~~~~~~~~~~~~  209 (711)
T 4hvt_A          132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFE-PITNSGKLLEGKFTYPTWIN-KDTIIFNLVLHKNEI  209 (711)
T ss_dssp             EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSC-CBCTTCCBCCEETCCEEEEE-TTEEEECCCCSTTCB
T ss_pred             eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcc-cccccccccccccceeeEEC-CCEEEEEeCCCCCCc
Confidence            3344 889999888762  2    3599999999877632 22 111        114457875 444444321      


Q ss_pred             ----CCCcEEEEEeecce--eeeeeccccccc-eeEEEecCCC-----EEEEEcCC---CcEEEEEcCCCcccceeeeec
Q 001311          868 ----DDSSIQIYNVRVDE--VKSKLKGHSKRI-TGLAFSHALN-----VLVSSGAD---SQLCVWSSDGWEKQKNRFLQI  932 (1102)
Q Consensus       868 ----~dg~v~vwd~~~~~--~~~~l~~h~~~V-~~l~~s~d~~-----~l~s~s~D---g~i~vwd~~~~~~~~~~~~~~  932 (1102)
                          ....|+.|.+.+..  -...+.+....+ .+...+.|++     .+++.+.+   ..+.+.+...... ....+..
T Consensus       210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~l~~  288 (711)
T 4hvt_A          210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL-KLQKINM  288 (711)
T ss_dssp             CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC-EEEECCS
T ss_pred             CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC-cceEeec
Confidence                12468888876532  222233322222 2345566766     24444423   3355556543111 0111211


Q ss_pred             CCCCCCCCCCCcEEEEccCCcEEEEE-----------eCCeEEEEEcCCce-------EeeeeccCCCCCCeeEEEEcCC
Q 001311          933 PTGRTPTAQSDTRVQFHQDQIHFLVV-----------HETQLAIFETTKLE-------CVKQWVPRESSAPITHATFSCD  994 (1102)
Q Consensus       933 ~~~~~~~~~~v~~~~~spdg~~l~~~-----------~d~~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~spd  994 (1102)
                      ..        -..+..+.++.+++..           ..+.|.+.++.++.       ....+........+..+.+..+
T Consensus       289 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  360 (711)
T 4hvt_A          289 PS--------DATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD  360 (711)
T ss_dssp             CT--------TCEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred             CC--------cceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence            11        1233455666666632           35678899987642       1222222233567888999876


Q ss_pred             CcEEEEEeCCCe--EEEEEcCCce-eEEE-eCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecC---CcEEEEecc
Q 001311          995 SQLVYACFLDAT--VCVFSAANLK-LRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSD---GGVHVFEPL 1066 (1102)
Q Consensus       995 ~~~l~s~s~Dg~--I~vwd~~~~~-~~~~-~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~D---g~v~vW~~~ 1066 (1102)
                       .++++...++.  |+++++.+++ .... +.    ++..   ..+.  .....++.+.++++.++.   +.+..+|+.
T Consensus       361 -~l~~~~~~~~~~~l~~~~~~~g~~~~~~~i~----lp~~---~~~~--~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          361 -RVFLATYDNVVAKVVTFTLENEQWTKPVVLK----LPYQ---NAIF--GMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             -CEEEEEEETTEEEEEEECEETTEECCCEEEC----CCST---TCEE--EEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             -EEEEEEEECCEEEEEEEECCCCceEEEeccC----CCCC---eEEE--EEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence             56777777775  6777777775 2222 33    2211   1122  334445444555555543   467777765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=86.13  E-value=3.8  Score=45.92  Aligned_cols=115  Identities=17%  Similarity=0.114  Sum_probs=77.8

Q ss_pred             CCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCce-------------eeeecCCCCCeeEEEEecCCCcEEEEEeCCC
Q 001311          806 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKT-------------MATFMPPPPAATFLAFHPQDNNIIAIGMDDS  870 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~-------------~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg  870 (1102)
                      ......+.++|||+++++++  +.++.++|+.....             ....+ -.-.....+|.+ +|+-..+-.-|.
T Consensus       322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS  399 (638)
T 3sbq_A          322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS  399 (638)
T ss_dssp             SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred             CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence            34456789999999999988  78999999874211             11222 234578899999 787667777999


Q ss_pred             cEEEEEeecc----------eeeeeeccccccceeEE------EecCCCEEEEEc---CCCcE----------EEEEcCC
Q 001311          871 SIQIYNVRVD----------EVKSKLKGHSKRITGLA------FSHALNVLVSSG---ADSQL----------CVWSSDG  921 (1102)
Q Consensus       871 ~v~vwd~~~~----------~~~~~l~~h~~~V~~l~------~s~d~~~l~s~s---~Dg~i----------~vwd~~~  921 (1102)
                      +|.-|++...          ..+.++.-|-.+ -.+.      -.+||++|++..   .|+.+          .+.|+.+
T Consensus       400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             EEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             eEEEEeccHHHHHhcCccCCeeeeccccccCC-cccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            9999999763          355555544432 2222      257999999974   45443          5666655


Q ss_pred             Cc
Q 001311          922 WE  923 (1102)
Q Consensus       922 ~~  923 (1102)
                      .+
T Consensus       479 dk  480 (638)
T 3sbq_A          479 DE  480 (638)
T ss_dssp             SS
T ss_pred             Cc
Confidence            43

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=83.85  E-value=11  Score=42.25  Aligned_cols=113  Identities=11%  Similarity=0.040  Sum_probs=61.1

Q ss_pred             cceeEEEecCCC-EEEEEcCCCcEEEEEcCCCcccceeeeecCCCCC-----CCCCCCcEEEEccC----CcEEEE-EeC
Q 001311          892 RITGLAFSHALN-VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRT-----PTAQSDTRVQFHQD----QIHFLV-VHE  960 (1102)
Q Consensus       892 ~V~~l~~s~d~~-~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~spd----g~~l~~-~~d  960 (1102)
                      .-++|+|.|||. .|+++...|.|++++...... ...+..+.....     ........++|+|+    +.+.++ +.+
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~-~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIF-KEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBC-SSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCee-eeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            357899999995 444456789999997543211 111121111100     01246688999997    444333 321


Q ss_pred             ------------CeEEEEEcCC----------ceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCC
Q 001311          961 ------------TQLAIFETTK----------LECVKQWVPRESSAPITHATFSCDSQLVYACFLDA 1005 (1102)
Q Consensus       961 ------------~~i~iwd~~~----------~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg 1005 (1102)
                                  ..|.-|.+..          .+.+..+...........|+|.|||.+.++.++.+
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence                        1344455532          12333332112123468999999998877766543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=80.59  E-value=6.7  Score=48.63  Aligned_cols=82  Identities=15%  Similarity=0.081  Sum_probs=53.0

Q ss_pred             CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEE---ecCCc
Q 001311          983 SAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG---LSDGG 1059 (1102)
Q Consensus       983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~---~~Dg~ 1059 (1102)
                      ...+.+++..++..++++-+.|+++|||++.+++++.........+...  . ..  .....|..+.++.+-   ..+|.
T Consensus       235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL~~~~~~~~--~-~~--~~~~~~~~~~~i~v~~s~~~~g~  309 (950)
T 4gq2_M          235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELSQTILPLQ--S-FP--YLTSDHTTNSFIALYYPDNSHGS  309 (950)
T ss_dssp             TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEECCCCCCCSC--C-CC--CEEECSSSTTEEEEEECCSSSCE
T ss_pred             cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecccccCCccc--c-cc--ccccCCCcccEEEEEEcCCCCcE
Confidence            3467778888899999999999999999999999999876443332221  1 11  122233334444332   24577


Q ss_pred             EEEEeccCCC
Q 001311         1060 VHVFEPLESE 1069 (1102)
Q Consensus      1060 v~vW~~~~~~ 1069 (1102)
                      .++|.+....
T Consensus       310 F~~~~~~~~~  319 (950)
T 4gq2_M          310 FSIYKLNANA  319 (950)
T ss_dssp             EEEEEEEEC-
T ss_pred             EEEEEEecCC
Confidence            8888875544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1102
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-18
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-08
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-05
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	9e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-11
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	7e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-10
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	6e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	4e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.004
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	9e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	1e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	6e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	5e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	1e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	6e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.003

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 84.9 bits (208), Expect = 7e-18
 Identities = 55/376 (14%), Positives = 106/376 (28%), Gaps = 62/376 (16%)

Query: 305 INLPVNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV 364
           ++L    +P +    ++ +      + P ++   + ++L+  S    + F       L  
Sbjct: 21  LDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN-DGEYLAT 79

Query: 365 GTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424
           G N     ++ V S   LV R             L  +      + +  V +SPDG    
Sbjct: 80  GCN-KTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 425 VAYSRHIVQIYSYHGG-------------------------------------DEVRQHL 447
                 +++I+                                          D      
Sbjct: 138 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC 197

Query: 448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG-------AKQYIFEGHEAPV 500
            +   +          P     +     D+ ++VWD+  G       ++     GH+  V
Sbjct: 198 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 257

Query: 501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGF 560
           YSV        Q + S +LD  +K W   N  ++ D + P      + Y           
Sbjct: 258 YSVVFTRDG--QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS-- 313

Query: 561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG----LPASPRIRFNK 616
                  V         L+   D  + FWD  S   L  +         +  +       
Sbjct: 314 -------VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 366

Query: 617 DGCLLAVSTNDNGIKI 632
           +  + A  + D   +I
Sbjct: 367 EYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.0 bits (172), Expect = 2e-13
 Identities = 26/195 (13%), Positives = 63/195 (32%), Gaps = 31/195 (15%)

Query: 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 406
               ++   P     +  G+    + +W+  +              G     L +     
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--------------GFLVERLDSENESG 250

Query: 407 PGV--SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV---------GG 455
            G   SV  V+++ DG           V++++    +        ++             
Sbjct: 251 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 310

Query: 456 VNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI---- 511
           V  +A +  ++   +++   D+ +  WD  +G    + +GH   V SV   +  ++    
Sbjct: 311 VLSVATTQNDE--YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEY 368

Query: 512 QFIFSTALDGKIKAW 526
               + + D K + W
Sbjct: 369 NVFATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (141), Expect = 1e-09
 Identities = 19/132 (14%), Positives = 45/132 (34%), Gaps = 20/132 (15%)

Query: 806 EEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA------------TF 852
           +++V     +++   V+S S    + L+N+      +    P                  
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 853 LAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHAL------NVLV 906
           +A    ++  I  G  D  +  ++ +       L+GH   +  +A ++        NV  
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 907 SSGADSQLCVWS 918
           +   D +  +W 
Sbjct: 373 TGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 3e-09
 Identities = 32/255 (12%), Positives = 72/255 (28%), Gaps = 17/255 (6%)

Query: 774  NSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN 833
            +  GK  A+ A         I     V      E              + +  G  ++  
Sbjct: 130  SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 189

Query: 834  M-MTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV-------RVDEVKSK 885
              +     +  +      T +A  P D   IA G  D ++++++        R+D     
Sbjct: 190  WDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249

Query: 886  LKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSD-- 943
              GH   +  + F+     +VS   D  + +W+      + +           T      
Sbjct: 250  GTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKD 309

Query: 944  --TRVQFHQDQIHFLVVHET-QLAIFETTKLECVKQWVPRESS----APITHATFSCDSQ 996
                V   Q+  + L   +   +  ++      +       +S    A    ++   +  
Sbjct: 310  FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYN 369

Query: 997  LVYACFLDATVCVFS 1011
            +      D    ++ 
Sbjct: 370  VFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 1e-08
 Identities = 22/194 (11%), Positives = 56/194 (28%), Gaps = 31/194 (15%)

Query: 415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVR----QHLEIDAHVGGVNDIAFSHPNKQLCV 470
           +   DG           V+++    G  V     ++     H   V  + F+   + +  
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV-- 269

Query: 471 ITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI----------QFIFSTALD 520
           ++   D+++K+W+  N   +   +   +    V     ++           ++I S + D
Sbjct: 270 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 329

Query: 521 GKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA 580
             +  W   +    +  +       ++A +                        N F   
Sbjct: 330 RGVLFWDKKSGNPLLMLQGHRNSVISVAVANG---------------SSLGPEYNVFATG 374

Query: 581 GDDFSIKFWDMDSV 594
             D   + W    +
Sbjct: 375 SGDCKARIWKYKKI 388

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (129), Expect = 4e-08
 Identities = 17/142 (11%), Positives = 36/142 (25%), Gaps = 17/142 (11%)

Query: 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 406
            S  S+ F       ++ G+    + LW + +                 +          
Sbjct: 255 DSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-------IG 306

Query: 407 PGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFS---- 462
               V  V  + +            V  +    G+ +     +  H   V  +A +    
Sbjct: 307 HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL---MLQGHRNSVISVAVANGSS 363

Query: 463 -HPNKQLCVITCGDDKTIKVWD 483
             P   +   T   D   ++W 
Sbjct: 364 LGPEYNV-FATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 5e-05
 Identities = 48/333 (14%), Positives = 104/333 (31%), Gaps = 67/333 (20%)

Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG---------------- 495
           H   V  + FS+  + L     G +KT +V+  ++G+                       
Sbjct: 61  HTSVVCCVKFSNDGEYLA---TGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSS 117

Query: 496 --HEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADG 553
              +  + SVC     + +F+ + A D  I+ W  +N    +  +   +   ++ Y   G
Sbjct: 118 PSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175

Query: 554 TRTYQGFRKRSL---------------------GVVQFDTTKNRFLAAGDDFSIKFWDMD 592
            +   G   R++                      V           A   D +++ WD +
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235

Query: 593 SVQLLTSIDADGGLPASPR-----IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 647
           +  L+  +D++       +     + F +DG  +   + D  +K+    +      +   
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP 295

Query: 648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADR---------AASMVSIPGMNGDVRS 698
            +     T    K  +  ++         +G  DR            ++ + G    V S
Sbjct: 296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVIS 355

Query: 699 LADVK--------PRITEESNDKS-KVWKLTEL 722
           +A                 S D   ++WK  ++
Sbjct: 356 VAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.3 bits (199), Expect = 6e-17
 Identities = 27/141 (19%), Positives = 54/141 (38%), Gaps = 12/141 (8%)

Query: 388 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 445
           K+WD+  G C               +N + + P+G+ F         +++      E+  
Sbjct: 209 KLWDVREGMCRQTF-----TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT 263

Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505
           +   D  + G+  ++FS   + L  +   DD    VWDA    +  +  GH+  V  +  
Sbjct: 264 Y-SHDNIICGITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGV 320

Query: 506 HHKENIQFIFSTALDGKIKAW 526
               +   + + + D  +K W
Sbjct: 321 TD--DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.5 bits (189), Expect = 1e-15
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 9/163 (5%)

Query: 759 SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND 818
           +  +  L     T    SG   AS   +LW    G+      T +  E  +       N 
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ---TFTGHESDINAICFFPNG 238

Query: 819 SYVMSASGG---KISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY 875
           +   + S     ++            +        T ++F      ++  G DD +  ++
Sbjct: 239 NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVW 297

Query: 876 NVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
           +    +    L GH  R++ L  +     + +   DS L +W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.4 bits (181), Expect = 1e-14
 Identities = 50/332 (15%), Positives = 98/332 (29%), Gaps = 49/332 (14%)

Query: 326 SQAFSTPEDLPKT---VTRTLNQGSSP-MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRER 381
           SQ  +  + + +      RTL    +   +M +      LL+  +  G + +W+  +  +
Sbjct: 31  SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTNK 89

Query: 382 LVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD 441
           +     +   +  C+       V   G+     I++       V  SR +     Y    
Sbjct: 90  VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149

Query: 442 EVRQHLEIDAHVGGVNDIAFSHPNKQLCV---------------------ITCGDDKTIK 480
                 +I    G      +     Q                        ++   D + K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209

Query: 481 VWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAP 540
           +WD   G  +  F GHE+ + ++C     N     + + D   + +        + Y   
Sbjct: 210 LWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 541 GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 600
              C   +                   V F  +    LA  DDF+   WD         +
Sbjct: 268 NIICGITS-------------------VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVL 308

Query: 601 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
                  +   +    DG  +A  + D+ +KI
Sbjct: 309 AGHDNRVSC--LGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.3 bits (160), Expect = 5e-12
 Identities = 20/158 (12%), Positives = 49/158 (31%), Gaps = 9/158 (5%)

Query: 855  FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQL 914
                D  +   G  D+S ++++VR    +    GH   I  + F    N   +   D+  
Sbjct: 191  SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 915  CVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHET-QLAIFETTKLEC 973
             ++     ++                   T V F +     L  ++     +++  K + 
Sbjct: 251  RLFDLRADQELMTYSHDNIICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 974  VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFS 1011
                        ++    + D   V     D+ + +++
Sbjct: 305  AGVL--AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.4 bits (142), Expect = 9e-10
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 26/181 (14%)

Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            V  +  +PD  LF         +++    G   +       H   +N I F        
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQ---TFTGHESDINAICFFPNGNAF- 241

Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
             T  DD T +++D     +   +               ++ + + +   D     W   
Sbjct: 242 -ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300

Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
                          + +  + DG                             D  +K W
Sbjct: 301 KADRAGVLAGHDNRVSCLGVTDDG---------------------MAVATGSWDSFLKIW 339

Query: 590 D 590
           +
Sbjct: 340 N 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (179), Expect = 2e-14
 Identities = 41/307 (13%), Positives = 101/307 (32%), Gaps = 14/307 (4%)

Query: 612 IRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAA 671
           + F+    ++  ++ D  IK+     G    RT +   +  S    +   +   +++ +A
Sbjct: 23  VIFHPVFSVMVSASEDATIKVWDYETG-DFERTLK--GHTDSVQDISFDHSGKLLASCSA 79

Query: 672 AAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSL 731
                         + ++ G + +V S++ +       S  + K  K+ E+      ++ 
Sbjct: 80  DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTF 139

Query: 732 RLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPP 791
                              G  I + +++    +W     E  +  +    V   +    
Sbjct: 140 TGHREWVRMVR----PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS--- 192

Query: 792 SGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAA 850
                 +  +  +           K   +++S S    I ++++ T   + T +      
Sbjct: 193 --WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 250

Query: 851 TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 910
             + FH      I    DD ++++++ +       L  H   +T L F      +V+   
Sbjct: 251 RGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSV 309

Query: 911 DSQLCVW 917
           D  + VW
Sbjct: 310 DQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.1 bits (162), Expect = 3e-12
 Identities = 26/209 (12%), Positives = 64/209 (30%), Gaps = 23/209 (11%)

Query: 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 508
           +  H   V  + F      +  ++  +D TIKVWD   G  +   +GH   V  +   H 
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTM--------AYSADGTRTYQGF 560
             +    S  +  K+  +        +          ++        + S D T      
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 561 R-----------KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPAS 609
           +           +  + +V+ +       +  +D +++ W + + +    +     +   
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVEC 190

Query: 610 PRIRFNKDGCLLAVSTNDNGIKILATSDG 638
             I +  +    ++S         +   G
Sbjct: 191 --ISWAPESSYSSISEATGSETKKSGKPG 217

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 2e-08
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            V  V++   G           ++++ Y     ++    ++AH   V  + F      + 
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---TLNAHEHFVTSLDFHKTAPYV- 304

Query: 470 VITCGDDKTIKVWD 483
            +T   D+T+KVW+
Sbjct: 305 -VTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.6 bits (127), Expect = 5e-08
 Identities = 47/241 (19%), Positives = 76/241 (31%), Gaps = 17/241 (7%)

Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            V RVI+ P  S+   A     ++++ Y  GD  R    +  H   V DI+F H  K L 
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLA 75

Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
             +      +  +      +      H     S+ P+       I S + D  IK W   
Sbjct: 76  SCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG----DHIVSASRDKTIKMWEVQ 131

Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD---FSI 586
                  +     W   +  + DGT        +++ V    T + +            I
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 587 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE 646
            +    S   ++          S   +  K G  L   + D  IK+   S G   L T  
Sbjct: 192 SWAPESSYSSISEAT------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLV 244

Query: 647 N 647
            
Sbjct: 245 G 245

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 7e-08
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 20/137 (14%)

Query: 810 PCFALSKNDSYVMSASG-GKISLFNMMTFKTMATFMPPPPAATFLAFHPQ---------- 858
                +++ + + S S    + ++ + T +  A           +++ P+          
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 859 ---------DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 909
                        +  G  D +I++++V        L GH   + G+ F      ++S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 910 ADSQLCVWSSDGWEKQK 926
            D  L VW        K
Sbjct: 267 DDKTLRVWDYKNKRCMK 283

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 851  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGA 910
            T + FHP   +++    +D++I++++    + +  LKGH+  +  ++F H+  +L S  A
Sbjct: 21   TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79

Query: 911  DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTK 970
            D  + +W   G+E  +          + +   +        +   + + E Q        
Sbjct: 80   DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-------- 131

Query: 971  LECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022
                           +     + D  L+ +C  D TV V+  A  + +  + 
Sbjct: 132  -TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR 182

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 1e-04
 Identities = 22/161 (13%), Positives = 48/161 (29%), Gaps = 9/161 (5%)

Query: 883  KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQS 942
            K  L GH   +T + F    +V+VS+  D+ + VW  +        F +   G T + Q 
Sbjct: 10   KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-----TGDFERTLKGHTDSVQD 64

Query: 943  DTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACF 1002
             +     +           +L  F+                  ++  +   +   + +  
Sbjct: 65   ISFDHSGKLLASCSADMTIKLWDFQG----FECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120

Query: 1003 LDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAA 1043
             D T+ ++                    V  +    L+ + 
Sbjct: 121  RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASC 161

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.9 bits (169), Expect = 5e-13
 Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 6/178 (3%)

Query: 851  TFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGHSKRITGLAFSHALNVLVSS 908
            +  A++  D   IAI  ++  + IY    ++     +LK H+ ++TG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 909  GADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFET 968
            G D    VW+  G   +    +          +     +               +  FE 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS---RVISICYFEQ 126

Query: 969  TKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1026
                 V + + +   + +    +  +S L+ A   D    +FSA   ++  R  P+ +
Sbjct: 127  ENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.6 bits (158), Expect = 1e-11
 Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 3/155 (1%)

Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            ++   W+ D +   +  + H V IY   G   V+ H E+  H G V  + ++  + ++ 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEHNGQVTGVDWAPDSNRI- 66

Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            +TCG D+   VW       +           + C     N +     +    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 564
                   +   +   +   S D           S
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGS 160

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.9 bits (112), Expect = 4e-06
 Identities = 22/368 (5%), Positives = 77/368 (20%), Gaps = 26/368 (7%)

Query: 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND 627
             ++  + +     ++  +  ++    + +   +          + +  D   +     D
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 628 NGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV 687
               +                   A+R    +         + +   +           V
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 688 SIPGMNGDVRSLADVKPRITEE------SNDKSKVWKLTELSEPNQCRSLRLPENLRATK 741
                     ++  +              + K +++         +         +    
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP-FG 191

Query: 742 ISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT 801
                 ++S   +  +  +A      W   +              L      + +    +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTV----------CLADADKKMAVATLAS 241

Query: 802 DSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 861
           ++ P   +         S V +       LF   +     +F          +       
Sbjct: 242 ETLP---LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTA 297

Query: 862 IIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSH----ALNVLVSSGADSQLCVW 917
                  D                   H   ++ ++         +   ++G D  + +W
Sbjct: 298 RERFQNLDKKASSEG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

Query: 918 SSDGWEKQ 925
                E  
Sbjct: 357 DVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 32/247 (12%), Positives = 65/247 (26%), Gaps = 27/247 (10%)

Query: 349 PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPG 408
            +          LL  G+      ++    +E         W        L        G
Sbjct: 143 TVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG 202

Query: 409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 468
             V+ V +S +GS          V +        V       +    +  + F   +   
Sbjct: 203 -WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL---ASETLPLLAVTFITESS-- 256

Query: 469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLY 528
            ++  G D    ++   + A +  F G            +          LD K  +   
Sbjct: 257 -LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQS--SQRGLTARERFQNLDKKASSEGS 313

Query: 529 DNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKF 588
              G+ +D        + ++  + G                     ++F   G D  +  
Sbjct: 314 AAAGAGLD-SLHKNSVSQISVLSGG-----------------KAKCSQFCTTGMDGGMSI 355

Query: 589 WDMDSVQ 595
           WD+ S++
Sbjct: 356 WDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 41.8 bits (96), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 2/53 (3%)

Query: 440 GDEVRQHLEIDAHVGGVNDIAFSHPNKQLC--VITCGDDKTIKVWDATNGAKQ 490
           G           H   V+ I+     K  C    T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 6e-11
 Identities = 29/197 (14%), Positives = 50/197 (25%), Gaps = 20/197 (10%)

Query: 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK 508
           +  H   V          ++  ++  DD T+KVW A  G       GH   V+S      
Sbjct: 12  LKGHDDHVIT-CLQFCGNRI--VSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 68

Query: 509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-------------R 555
             I       L                                 G+             +
Sbjct: 69  IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128

Query: 556 TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN 615
                      V        R ++   DF +K WD ++   L ++        +      
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGH----TNRVYSLQ 184

Query: 616 KDGCLLAVSTNDNGIKI 632
            DG  +   + D  I++
Sbjct: 185 FDGIHVVSGSLDTSIRV 201

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (143), Expect = 7e-10
 Identities = 44/321 (13%), Positives = 93/321 (28%), Gaps = 44/321 (13%)

Query: 315 SFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLW 374
           +  GH+     SQ          T        +            T  +   ++ +  + 
Sbjct: 52  TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 111

Query: 375 EVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 434
                  L + + +        M   AA+          V  + D  +  V        +
Sbjct: 112 SGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVK-VWDPETETCL 170

Query: 435 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494
           ++  G       L+ D                   V++   D +I+VWD   G   +   
Sbjct: 171 HTLQGHTNRVYSLQFDGI----------------HVVSGSLDTSIRVWDVETGNCIHTLT 214

Query: 495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 554
           GH++    +          + S   D  +K W           + P +  + +       
Sbjct: 215 GHQSLTSGMELKDN----ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC----- 265

Query: 555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS---VQLLTSIDADGGLPASPR 611
                              KN  + + DD ++K WD+ +   ++ L ++++ G      R
Sbjct: 266 ---------------LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR 310

Query: 612 IRFNKDGCLLAVSTNDNGIKI 632
           IR +    + AV + +   + 
Sbjct: 311 IRASNTKLVCAVGSRNGTEET 331

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 18/152 (11%)

Query: 385 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 444
            + +VWD+   +      +    G            ++     +   V+I+    G  ++
Sbjct: 197 TSIRVWDVETGNC-----IHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 251

Query: 445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-----EGHEAP 499
                + H   V  + F+       VIT  DD T+K+WD   G            G    
Sbjct: 252 TLQGPNKHQSAVTCLQFNKN----FVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307

Query: 500 VYSVCPHHKENIQFIFSTALDG--KIKAWLYD 529
           V+ +   +          + +G  + K  + D
Sbjct: 308 VWRIRASN--TKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 7e-05
 Identities = 17/129 (13%), Positives = 47/129 (36%), Gaps = 10/129 (7%)

Query: 801 TDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDN 860
           T +  +       L  ++  V   +   + ++++ T + + T   P    + +     + 
Sbjct: 212 TLTGHQSLTSGMELK-DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 861 NIIAIGMDDSSIQIYNVRVDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGAD---- 911
           N +    DD ++++++++  E    L      G    +  +  S+   V      +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 912 SQLCVWSSD 920
           ++L V   D
Sbjct: 331 TKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 8e-04
 Identities = 25/210 (11%), Positives = 57/210 (27%), Gaps = 29/210 (13%)

Query: 854  AFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQ 913
                   N I  G DD+++++++    +    L GH+  +                 D+ 
Sbjct: 22   CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-----------DNI 69

Query: 914  LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLEC 973
            +   S+D   K  N              S  R     ++       +  L +++    +C
Sbjct: 70   IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 129

Query: 974  VKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1033
            +   +   ++              V +   D  V V+          +            
Sbjct: 130  LHVLMGHVAAVRCVQYDGRR----VVSGAYDFMVKVWDPETETCLHTLQG---------- 175

Query: 1034 SNVHPLVIAAHPQEPNEFALGLSDGGVHVF 1063
               H   + +   +      G  D  + V+
Sbjct: 176  ---HTNRVYSLQFDGIHVVSGSLDTSIRVW 202

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (144), Expect = 6e-10
 Identities = 25/205 (12%), Positives = 55/205 (26%), Gaps = 26/205 (12%)

Query: 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-----------GHEA 498
            AH   +  ++  +       ++C  D  +KVWD      +   +            H  
Sbjct: 11  KAHDADIFSVSACNSF----TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 499 PVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 558
            V          +  + +T+  G +  +         D      +       +D  +   
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITRE----DETKKVIFEKLDLLDSDMKKH-- 120

Query: 559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDM-----DSVQLLTSIDADGGLPASPRIR 613
            F     G        +R +A     +   W       +S  L  +      L  +    
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180

Query: 614 FNKDGCLLAVSTNDNGIKILATSDG 638
                   +V  ++ G+     ++G
Sbjct: 181 MTPSQFATSVDISERGLIATGFNNG 205

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 6e-07
 Identities = 52/447 (11%), Positives = 115/447 (25%), Gaps = 68/447 (15%)

Query: 489 KQYI-----FEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 543
           K +I      + H+A ++SV   +     F  S + DG +K W    L +    +     
Sbjct: 1   KVFIATANAGKAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSH 56

Query: 544 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSV-QLLTSID 601
                                L  ++ D  +   +A       + F+ +    +    I 
Sbjct: 57  F---------VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIF 107

Query: 602 ADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT--SDGIRLLRTFENLAYDASRTSENS 659
               L  S   + +        S +      L      G   +  F   A +++  + N 
Sbjct: 108 EKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW 167

Query: 660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLA-DVKPRITEESNDKSKVWK 718
            PT+                 +   ++ S    +    S+    +  I    N+ +    
Sbjct: 168 SPTL-----------------ELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQIS 210

Query: 719 LTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGK 778
                 P      +      +  I  + F+  G+ +     +          TE      
Sbjct: 211 ELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIG 270

Query: 779 ATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFK 838
           + +               ++ V                 ++   +   GK+  +++ T +
Sbjct: 271 SLSVPTHSSQASLGEFAHSSWVM--------SLSFNDSGETLCSAGWDGKLRFWDVKTKE 322

Query: 839 TMATFM----PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT 894
            + T              LA     +++   G+ D                +K   K   
Sbjct: 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD----------------VKFLKKGWR 366

Query: 895 GLAFSHALNVLVSSGADSQLCVWSSDG 921
               +     L     D  +  +   G
Sbjct: 367 SGMGADLNESLCCVCLDRSIRWFREAG 393

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (117), Expect = 1e-06
 Identities = 25/189 (13%), Positives = 54/189 (28%), Gaps = 4/189 (2%)

Query: 316 FTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWE 375
                 S+S +  +S   +L  TV   +       S+D     + L+  G N G + + E
Sbjct: 154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISE 211

Query: 376 VGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
           + +   L     +   +   +            +       +  G +             
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 436 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG 495
                   +  L   AH   V  ++F+   +   + + G D  ++ WD     +      
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNM 329

Query: 496 HEAPVYSVC 504
           H   +    
Sbjct: 330 HCDDIEIEE 338

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 42/402 (10%), Positives = 100/402 (24%), Gaps = 42/402 (10%)

Query: 566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST 625
            +       +  ++   D  +K WD   +      D         +   +    L A+  
Sbjct: 16  DIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIER 74

Query: 626 NDNGIKILATS--DG-IRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR 682
           +   + ++AT+   G +   R             +           +  A    A     
Sbjct: 75  DAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 134

Query: 683 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 742
            +  +    + G       +           S     +   E        +  +  AT +
Sbjct: 135 LSHRLVATDVKGTTY----IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 190

Query: 743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802
                  S   ++A   N   +      T R                  S I  +N +  
Sbjct: 191 DI-----SERGLIATGFNNGTVQISELSTLRPL---------YNFESQHSMINNSNSIRS 236

Query: 803 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMM--------TFKTMATFMPPPPAATFLA 854
                     A++ + +     +  +      +        + +              L+
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLS 296

Query: 855 FHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI----TGLAFSHALNVLVSSGA 910
           F+      +     D  ++ ++V+  E  + L  H   I      LA     + L   G 
Sbjct: 297 FNDS-GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG- 354

Query: 911 DSQLCVWSSDGWEKQKNRFLQIPTGRT-PTAQSDTRVQFHQD 951
                V+     +K     +      +      D  +++ ++
Sbjct: 355 -----VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 14/154 (9%), Positives = 39/154 (25%), Gaps = 20/154 (12%)

Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE-- 509
           HV  +  I        L   T      +  +  T   +       +  +           
Sbjct: 65  HVDVLQAIERDAFELCLVA-TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW 123

Query: 510 -----------NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQ 558
                          + +T + G    W +         +         + + +   T +
Sbjct: 124 ALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFA-----DESNSLTLNWSPTLELQGTVE 178

Query: 559 GFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDM 591
                S      D ++   +A G ++ +++  ++
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISEL 212

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.5 bits (142), Expect = 8e-10
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK-QYIFEGHEAPVYSVCPHHKEN 510
           H   ++ I   + +  +  +  G +    +++  +G             ++SV    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 511 IQFIFSTALDGKIKAWLYD 529
              + +   DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 6e-08
 Identities = 25/178 (14%), Positives = 43/178 (24%), Gaps = 25/178 (14%)

Query: 443 VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502
           V Q   +  H+  V        N    VIT  DDK I+V+D+ N        GH+  V++
Sbjct: 2   VPQRTTLRGHMTSVITCLQFEDNY---VITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK 562
           +   H      + S               GS                             
Sbjct: 59  LKYAHG---GILVS---------------GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCL 100

Query: 563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL 620
                +         +    D ++  W +     +     +   P            +
Sbjct: 101 D----IVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 8e-07
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 832 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKGHS 890
                      F       + +      +NI+  G ++    IYN+R  + V + +   +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYNLRSGKLVHANILKDA 324

Query: 891 KRITGLAFSHALNVLVSSGADSQLCVWSSD 920
            +I  + F     ++ +   D Q  +   D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 6/150 (4%)

Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            ++N +  G DD  I++Y+    +   +L GH   +  L ++H   +LVS   D  + VW 
Sbjct: 22   EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80

Query: 919  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 978
                           T R          ++   +       +  L +++  K   V    
Sbjct: 81   IKKGCCTHVFEGHNSTVRCLDIV-----EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 135

Query: 979  PRESSAPITHATFSCDSQLVYACFLDATVC 1008
                   + H        +       A+V 
Sbjct: 136  EEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 28/206 (13%), Positives = 58/206 (28%), Gaps = 22/206 (10%)

Query: 444 RQHLE-IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYS 502
           R  L+ I         +     + Q  +++   D TIK+WD      + I  GH   V  
Sbjct: 2   RHSLQRIHCRSETSKGVYCLQYDDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60

Query: 503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTR------- 555
           +    +  I     + +                  EA              ++       
Sbjct: 61  LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW 120

Query: 556 ---------TYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 606
                      +        V   D      ++A  D +IK W+  + + + +++     
Sbjct: 121 DMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-- 178

Query: 607 PASPRIRFNKDGCLLAVSTNDNGIKI 632
                        L+   ++DN I++
Sbjct: 179 --RGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 34/136 (25%), Positives = 53/136 (38%), Gaps = 18/136 (13%)

Query: 455 GVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFI 514
           G          +   V++   D TI++WD   GA   + EGH      +    + + + I
Sbjct: 176 GHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGH----EELVRCIRFDNKRI 231

Query: 515 FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK 574
            S A DGKIK W  D + +       G  C          RT      R   + QFD  +
Sbjct: 232 VSGAYDGKIKVW--DLVAALDPRAPAGTLCL---------RTLVEHSGRVFRL-QFD--E 277

Query: 575 NRFLAAGDDFSIKFWD 590
            + +++  D +I  WD
Sbjct: 278 FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 4e-06
 Identities = 25/131 (19%), Positives = 42/131 (32%), Gaps = 15/131 (11%)

Query: 797 TNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF 855
           T +   +          L   D  V+S S    I L+++     +            +  
Sbjct: 167 TCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE---LVRC 223

Query: 856 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSK---------LKGHSKRITGLAFSHALNVLV 906
              DN  I  G  D  I+++++                 L  HS R+  L F      +V
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIV 281

Query: 907 SSGADSQLCVW 917
           SS  D  + +W
Sbjct: 282 SSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 2e-04
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 15/102 (14%)

Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHL 447
           ++WD+   +      L    G          D            ++++      + R   
Sbjct: 201 RLWDIECGAC-----LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPA 255

Query: 448 E------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD 483
                  +  H G V  + F    +   +++   D TI +WD
Sbjct: 256 GTLCLRTLVEHSGRVFRLQF-DEFQ---IVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 28/206 (13%), Positives = 63/206 (30%), Gaps = 25/206 (12%)

Query: 859  DNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
            D+  I  G+ D++I+I++    E K  L GH+  +  L +   + +             S
Sbjct: 24   DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII-----------TGS 72

Query: 919  SDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWV 978
            SD   +  +                       + +      +  +A+++      +    
Sbjct: 73   SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 979  PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1038
                           D + + +   D T+ V++ +  +              V + N H 
Sbjct: 133  VLVGH-RAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF-------------VRTLNGHK 178

Query: 1039 LVIAAHPQEPNEFALGLSDGGVHVFE 1064
              IA           G SD  + +++
Sbjct: 179  RGIACLQYRDRLVVSGSSDNTIRLWD 204

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 3e-09
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            +  + + P G    V      V++   +         ++  H   V  + F++  K   
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVN----KPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526
            ++ G D  +  W    GA  +      + V S      +  ++I + + D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDD--KYIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 1e-07
 Identities = 8/131 (6%), Positives = 24/131 (18%), Gaps = 2/131 (1%)

Query: 788 WQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPP 847
                 +     +   +    +          ++             +            
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHE 265

Query: 848 PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 907
                L F             D+ +  +         +    S  +     S     +V+
Sbjct: 266 SCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVT 323

Query: 908 SGADSQLCVWS 918
              D +  V+ 
Sbjct: 324 GSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 2e-07
 Identities = 26/267 (9%), Positives = 67/267 (25%), Gaps = 31/267 (11%)

Query: 388 KVWDL--GACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQ 445
           KVWD+       P+      +    +      PDG    V      + I+         +
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 446 HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505
                +                    + G+     + +     +  + +       + C 
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189

Query: 506 HHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL 565
               +   +++  LD  +++W          ++       ++ Y   G     G    ++
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248

Query: 566 GV--------------------VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 605
            V                    ++F      F++ G D  +  W       +        
Sbjct: 249 EVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSS 308

Query: 606 LPASPRIRFNKDGCLLAVSTNDNGIKI 632
           + +      + D   +   + D    +
Sbjct: 309 VLS---CDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 6e-07
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 414 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 473
           + ++  G  F      +++  +    G  + Q          V     S  +K +  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324

Query: 474 GDDKTIKVWD 483
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 17/139 (12%), Positives = 34/139 (24%), Gaps = 27/139 (19%)

Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENI 511
               +  + +    + L V       +       N   +Y    HE+ V S+   +    
Sbjct: 223 FTSQIFSLGYCPTGEWLAVGME---SSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK- 278

Query: 512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD 571
            +  ST  D  + AW     G+ +          +   S D                   
Sbjct: 279 -WFVSTGKDNLLNAWRTPY-GASIFQSKESSSVLSCDISVDD------------------ 318

Query: 572 TTKNRFLAAGDDFSIKFWD 590
                 +    D     ++
Sbjct: 319 ---KYIVTGSGDKKATVYE 334

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 56.5 bits (134), Expect = 6e-09
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 452 HVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIF-EGHEAPVYSVCPHHKEN 510
           H   +  ++ S   K L   +   +  I  WD + G    +F + H   +  +    K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 511 IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA 551
           +  +     D  +K       G         +  +     A
Sbjct: 69  LFTVSW---DDHLKVVPAGGSGVDSSKAVANKLSSQPLGLA 106

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.7 bits (98), Expect = 2e-04
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 416 WSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD 475
           WSPD          + V +++ +   +    ++    +  VN + + +      +++ G 
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET---TIVSAGQ 288

Query: 476 DKTIKVWD 483
           D  IK W+
Sbjct: 289 DSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 42.3 bits (97), Expect = 2e-04
 Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 463 HPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALD 520
                + + T   D ++ VW+    +     I   H     +      E    I S   D
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET--TIVSAGQD 289

Query: 521 GKIKAW 526
             IK W
Sbjct: 290 SNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 881 EVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 926
            +     GH+K IT L+ S     L S+ A+  +  W        +
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 48

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.4 bits (92), Expect = 9e-04
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 829 ISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL-- 886
                               A         DN  +A G  D+S+ ++N+        +  
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264

Query: 887 KGHSKRITGLAFSHALNVLVSSGADSQLCVWS 918
             H+              +VS+G DS +  W+
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.9 bits (130), Expect = 2e-08
 Identities = 29/329 (8%), Positives = 83/329 (25%), Gaps = 73/329 (22%)

Query: 351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVS 410
            +   P +  LL             + S +  +     V+     +  +           
Sbjct: 16  DIKIIPSKSLLL-------------ITSWDGSL----TVYKFDIQAKNVDLLQSLRYKHP 58

Query: 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEI--------------------- 449
           +    +  +  L     +     +     G    Q L                       
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 450 ------------------------DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDAT 485
                                   +++   V +  F+       +I   ++  ++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 486 NGAKQYIFEGHEAPVYSVCPH--HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRW 543
                          Y +       +  +    +++DG++    +D+ G   +     + 
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN---SSKR 235

Query: 544 CTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD 603
                +  +   T   +   S   ++F         AG D  I  W++ + + + +    
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNS---IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA-- 290

Query: 604 GGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
                   ++      +L ++T+D+  K 
Sbjct: 291 -KFNEDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (126), Expect = 8e-08
 Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 445 QHLEI-DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE---GHEAPV 500
           Q ++I  A    ++DI        L  +    D ++ V+     AK         ++ P+
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLL--LITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPL 59

Query: 501 YSVCPHHKENIQFIFST 517
                    ++Q    T
Sbjct: 60  LCCNFIDNTDLQIYVGT 76

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 5e-07
 Identities = 21/129 (16%), Positives = 36/129 (27%), Gaps = 19/129 (14%)

Query: 411 VNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV------------RQHLEIDAHVGGVND 458
            +  +   +   +  +     V +  +    +             R +L+       VN 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 459 IAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFST 517
           I FS  +K L   T G D  I  W+     K   F   +E  V  +          +   
Sbjct: 257 IEFSPRHKFLY--TAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310

Query: 518 ALDGKIKAW 526
             D   K  
Sbjct: 311 TSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 31/263 (11%), Positives = 75/263 (28%), Gaps = 19/263 (7%)

Query: 410 SVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLC 469
            ++ +   P  SL  +      + +Y +    +    L+   +   +    F        
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQ- 71

Query: 470 VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYD 529
            I  G  +   +     G+  +    +      +C   K     + + + DG I+     
Sbjct: 72  -IYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPR 130

Query: 530 NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFW 589
           N G  V          T   +   T                    +R +   ++  ++++
Sbjct: 131 NYGDGVIAVKNLNSNNTKVKNKIFTMDTNS---------------SRLIVGMNNSQVQWF 175

Query: 590 DMDSVQLLTSIDADGGLPASPRIR--FNKDGCLLAVSTNDNGIKILATSDGIRLLRTFEN 647
            +   +       + GL    R      K+    A S+ D  + +    D      + + 
Sbjct: 176 RLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235

Query: 648 LAYDASRTSENSKPTISPISAAA 670
            A+   R +        P+++  
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIE 258

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 39/376 (10%), Positives = 76/376 (20%), Gaps = 37/376 (9%)

Query: 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVSTN 626
                     +      ++   D+ S  +  S          P       D     V  N
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59

Query: 627 DNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASM 686
             G       D  +        +             ISP      A        +    +
Sbjct: 60  HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV 119

Query: 687 VSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLI 746
                         + KP  T     +  +                              
Sbjct: 120 KPPRLEVFSTADGLEAKPVRTFPMPRQVYLM----------------------------R 151

Query: 747 FTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPE 806
             + G+  +A        +   + T                         +     S   
Sbjct: 152 AADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML- 210

Query: 807 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 866
                           +         ++ T KT            F       +      
Sbjct: 211 -YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY- 268

Query: 867 MDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 926
              + +  Y+++  ++             +AF    + L   G  + L V++ D  EK K
Sbjct: 269 GVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK 327

Query: 927 NRFLQIPTGRTPTAQS 942
           N  +++P G   T   
Sbjct: 328 N--IKLPGGDMSTTTP 341

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 52.0 bits (123), Expect = 2e-07
 Identities = 30/305 (9%), Positives = 68/305 (22%), Gaps = 20/305 (6%)

Query: 340 TRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPL 399
           +  +     P +    P  +T  ++  + GDI   ++ + +     N             
Sbjct: 33  SCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY 92

Query: 400 QAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDI 459
             A+   P         +P   L      +               + +        V  +
Sbjct: 93  SFAI--SPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLM 150

Query: 460 AFSHPNKQLC------VITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 513
             +              +     K        N  ++          +       E    
Sbjct: 151 RAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 210

Query: 514 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT 573
                     +     +L             T     AD T  Y              + 
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY---------FTGLRSP 261

Query: 574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL 633
           K+     G    +  +D+   +L+ + +          + F+K G  L +    N + + 
Sbjct: 262 KDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYC--VAFDKKGDKLYLGGTFNDLAVF 318

Query: 634 ATSDG 638
                
Sbjct: 319 NPDTL 323

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 5e-06
 Identities = 28/278 (10%), Positives = 64/278 (23%), Gaps = 49/278 (17%)

Query: 346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVK 405
           G S  S    P     +    N           +   +    +V+               
Sbjct: 88  GRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRTFP 142

Query: 406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS------YHGGDEVRQ-----------HLE 448
            P   V  +  + DGSL+      + + + +          +  R+             +
Sbjct: 143 MPR-QVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ 201

Query: 449 IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD-ATNGAKQYIFEGHEAPVYSVCPHH 507
              H   +        + +    T          D  T       F       ++     
Sbjct: 202 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSP 261

Query: 508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGV 567
           K+  Q         ++  +        +           +A+   G + Y          
Sbjct: 262 KDPNQIYGV---LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLY---------- 307

Query: 568 VQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 605
                        G    +  ++ D+++ + +I   GG
Sbjct: 308 -----------LGGTFNDLAVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 40.9 bits (94), Expect = 7e-04
 Identities = 17/190 (8%), Positives = 42/190 (22%), Gaps = 20/190 (10%)

Query: 309 VNVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNV 368
           V ++  +  G  +           +      T  L   +        P         +  
Sbjct: 147 VYLMRAADDGSLYVAGPDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPHQSPR 204

Query: 369 GDIGLWEVGSRERLVLRNF---------KVWDLGACSMPLQAALVKDPGVSVNRVIWSPD 419
            +  +    +R +   ++             DL       Q             +    D
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELY-FTGLRSPKD 263

Query: 420 GSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI 479
            +   +    + +  Y       ++              +AF     +L     G    +
Sbjct: 264 PNQ--IYGVLNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKL--YLGGTFNDL 315

Query: 480 KVWDATNGAK 489
            V++     K
Sbjct: 316 AVFNPDTLEK 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.6 bits (124), Expect = 1e-07
 Identities = 37/322 (11%), Positives = 82/322 (25%), Gaps = 53/322 (16%)

Query: 347 SSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKD 406
           +    + + P    +                  +   +R     D G   +P        
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 407 PGVSVNRVIWSP--DGSLFGVAYSRHIVQIYSYHGGDEVRQHL-----EIDAHVGGVNDI 459
               V  V +SP               V ++ +    E          E     G ++DI
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 460 AFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL 519
           ++    ++LCV+  G D         +G       GH   + +        ++ +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 520 DGKIKAWLYDNLGSRVDYEAPG--RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK--- 574
              +         S  D        +   + +S D                    +    
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241

Query: 575 ----------------------NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRI 612
                                  +F   G D +I+ WD+ + + +     D     + ++
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 301

Query: 613 RF--NKDGCLLAVSTNDNGIKI 632
                 +G ++++S  D  +  
Sbjct: 302 GVVATGNGRIISLS-LDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 469 CVITCGDDKTIKVWDATNGA--KQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW 526
              T G D TI+VWD T     +++  +  +     V      N   I S +LDG +  +
Sbjct: 265 KFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 22/131 (16%), Positives = 48/131 (36%), Gaps = 10/131 (7%)

Query: 839 TMATFMPPPPA-----ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGH-S 890
           ++   +PP P+      T L++ P  N I       + ++  +    +V    +  GH S
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 891 KRITGLAFSHALN--VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQF 948
             +T + FS       L S     ++ VW     ++  +  + + +     A   + + +
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 949 HQDQIHFLVVH 959
             +     VV 
Sbjct: 124 DFEGRRLCVVG 134

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 46/327 (14%), Positives = 82/327 (25%), Gaps = 40/327 (12%)

Query: 277 PTNPSVDYPSGDSDHLSKRTRPIGISDEINLPVNVLPVSFTGHSHSHSHSQAFSTPED-- 334
           PT  ++ YP G S  +    R +   D    PV    V FTGH  S   +  FS  +   
Sbjct: 27  PTTNAIAYPCGKSAFV----RCLDDGDSKVPPV----VQFTGHGSSVVTTVKFSPIKGSQ 78

Query: 335 ------LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRE--RLVLRN 386
                     V           +     V+    ++   + DI     G R       R+
Sbjct: 79  YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138

Query: 387 FKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQH 446
                +   S      +           +                V  Y           
Sbjct: 139 NFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD 198

Query: 447 LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH 506
                    V D+ FS  + +  +    D K       +    +YI +  E     +   
Sbjct: 199 RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL 258

Query: 507 HKENIQFIFSTALDGKIKAWLYDN--LGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 564
              + Q   +   D  I+ W         +   +        +   A G           
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATG----------- 307

Query: 565 LGVVQFDTTKNRFLAAGDDFSIKFWDM 591
                      R ++   D ++ F+++
Sbjct: 308 ---------NGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 8e-04
 Identities = 12/89 (13%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 832 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK 891
                F         P      A    D+   A    D++I++++V   +   K     +
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294

Query: 892 RITGLAFSHAL---NVLVSSGADSQLCVW 917
           ++              ++S   D  L  +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFY 323

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 29/299 (9%), Positives = 74/299 (24%), Gaps = 24/299 (8%)

Query: 338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSM 397
           T+T+ ++       M   P ++ L +       +  + +   +  +    +         
Sbjct: 28  TLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA------- 80

Query: 398 PLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVN 457
                       S+  +     G    V          +          +++   + G +
Sbjct: 81  ---------LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH 131

Query: 458 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST 517
               S  N+ L V     D+      + +G            V    P H      +F  
Sbjct: 132 SANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRH-----MVFHP 186

Query: 518 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRF 577
                      ++     + + P      +         +   R  +   +  D  ++ +
Sbjct: 187 NEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD-GRHLY 245

Query: 578 LAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPR-IRFNKDGCLLAVS-TNDNGIKILA 634
                   I  + +     + S +        PR    +  G  L  +    + I +  
Sbjct: 246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE 304

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.5 bits (122), Expect = 4e-07
 Identities = 52/396 (13%), Positives = 111/396 (28%), Gaps = 41/396 (10%)

Query: 571 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGI 630
           D      +   D   I   D DS +++  ID  G        R +  G  L V   D  I
Sbjct: 29  DLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-GYAVHI--SRMSASGRYLLVIGRDARI 85

Query: 631 KILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL-----ADRAAS 685
            ++         +  E      +R+ E+             A A           +    
Sbjct: 86  DMIDLWAK-EPTKVAEIKIGIEARSVES-SKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143

Query: 686 MVSIPGMNGDVRSLA---DVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI 742
              +      V +     + +      S++  +     + +      + +  +NL  T I
Sbjct: 144 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI 203

Query: 743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD 802
               F   G       S+  + +     + + +   +       L               
Sbjct: 204 GAAPFLADG----GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF 259

Query: 803 SNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI 862
            +P+           D  + S  G          +K +A        + F+  HP+ +++
Sbjct: 260 VHPKYGPVWSTSHLGDGSI-SLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHL 318

Query: 863 IAI------GMDDSSIQIYNVRVDEVKSKLKGHS---------KRITGLAFSHA-----L 902
                         S+ +++++  + K ++   +         KR+    ++        
Sbjct: 319 YVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 378

Query: 903 NVLVSSGADSQLCVWSSDGWEKQ---KNRFLQIPTG 935
           +V       S L V      + +   K+  L  PTG
Sbjct: 379 SVWNGKNDSSALVVVDDKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.2 bits (103), Expect = 6e-05
 Identities = 26/276 (9%), Positives = 70/276 (25%), Gaps = 34/276 (12%)

Query: 333 EDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLV-GTNVGDIGLWEVGSRERLVLRNFKVWD 391
            ++ ++    +     P           L  V   + G I L +  S++  +++      
Sbjct: 5   PEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKK--IVKVIDT-- 60

Query: 392 LGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG--DEVRQHLEI 449
                           G +V+    S  G    V      + +         +V +    
Sbjct: 61  ----------------GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 104

Query: 450 DAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKE 509
                  +         +  +          + D      + I       V +   H + 
Sbjct: 105 IEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163

Query: 510 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569
            +  I ++    +    + +  G  +          T+           G          
Sbjct: 164 RVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGG--------- 213

Query: 570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGG 605
           +D++   F+ A ++ +         + L+++   G 
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 4e-07
 Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 439 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA 498
           G DEV + +    H  G+  +  +       +I+   D  I  W +++       + H  
Sbjct: 1   GHDEVLKTIS--GHNKGITALTVNP------LISGSYDGRIMEWSSSSM-----HQDHSN 47

Query: 499 PVYSVCPHHKENIQFIFS 516
            + S+     +    I  
Sbjct: 48  LIVSLDNSKAQEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.3 bits (118), Expect = 5e-07
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 832 FNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD-EVKSKLKGHS 890
                  +    +   PA         + +++A G  D++I IY+V+   ++   L  H 
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258

Query: 891 KRITGLAFSHALNVLVSSGADSQLCVWS 918
             +  L +    + LVSSGAD+ +  W+
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 414 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITC 473
                +  L         + IYS     ++ + L   AH  GVN++ +  P+    +++ 
Sbjct: 221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWETPST---LVSS 275

Query: 474 GDDKTIKVWD 483
           G D  IK W+
Sbjct: 276 GADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 880 DEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEK 924
           DEV   + GH+K IT L  +     L+S   D ++  WSS    +
Sbjct: 3   DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.2 bits (118), Expect = 6e-07
 Identities = 33/333 (9%), Positives = 88/333 (26%), Gaps = 14/333 (4%)

Query: 574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKI 632
           ++  LA      +   D + + +   I      P          G +   +      +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 633 LATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM 692
           +    G  L R   +   +  ++   +  +    + A   +     L         +   
Sbjct: 61  IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120

Query: 693 NGDVRSLADVKPRITEE-----SNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIF 747
           + +  S         +      + D SK++ L          +  L E+          +
Sbjct: 121 DAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETY 180

Query: 748 TNSGNAILALASNAIHLLWKW---QRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSN 804
                  +     +  ++       R + + +               +G M   +V   +
Sbjct: 181 AQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD 240

Query: 805 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIA 864
                     +K  ++        +  F++    ++    P P +   +     D + + 
Sbjct: 241 VFYFSTAVNPAKTRAFGAY---NVLESFDLEKNASIKRV-PLPHSYYSVNVST-DGSTVW 295

Query: 865 IGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLA 897
           +G     +  Y+    E K ++         LA
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 5e-04
 Identities = 29/291 (9%), Positives = 71/291 (24%), Gaps = 38/291 (13%)

Query: 338 TVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFK----VWDLG 393
            ++    +  S       P  +TL +  + V            R+ L + +         
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 394 ACSMPLQAALVKDPG---VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID 450
           A       A  +D          +      +   V            +   +V       
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 451 AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI-FEGHEAPVYSVCPHHKE 509
              G +    ++                +   D   G          +   +S   +  +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 510 NIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQ 569
              F         ++++  +   + +          ++  S DG+  +            
Sbjct: 253 TRAFGA----YNVLESFDLEK-NASIKRVPLPHSYYSVNVSTDGSTVW------------ 295

Query: 570 FDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP---ASPRIRFNKD 617
                      G    +  +D ++++    +D  G      AS R+ F +D
Sbjct: 296 ---------LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRL-FTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.2 bits (92), Expect = 0.001
 Identities = 21/299 (7%), Positives = 69/299 (23%), Gaps = 49/299 (16%)

Query: 388 KVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR-HIVQIYSYHGGDEVRQH 446
            V D    ++  +   + D G +    + +P G +     ++   +       G+ + + 
Sbjct: 14  VVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 447 LEIDAHVGGVNDIAFS-HPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCP 505
                     +    +  P+ +   I     +           +  +++           
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 506 HHKENIQFIFST-----ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTY--- 557
             ++     ++         G+    +    G+ V+ +    W        D    +   
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS------------------ 599
           +     +          +          +   D+++ ++                     
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 600 ------------IDADGG-------LPASPR-IRFNKDGCLLAVSTNDNGIKILATSDG 638
                        D +         LP S   +  + DG  + +      +        
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 15/174 (8%), Positives = 47/174 (27%), Gaps = 9/174 (5%)

Query: 319 HSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGS 378
            S  +   +     +    T+       S        P    +     + G +      +
Sbjct: 146 GSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTA 205

Query: 379 RERLVLRNFKVWDLGACSMPLQAALVK---DPGVSVNRVIWSPDGSLFGVAYSRHIVQIY 435
           R+ +   +   +  G  +M L+   +       + V     + + +      + ++++ +
Sbjct: 206 RKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESF 265

Query: 436 SYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK 489
                  +++             +  S     +     G    +  +DA    K
Sbjct: 266 DLEKNASIKRVP----LPHSYYSVNVSTDGSTV--WLGGALGDLAAYDAETLEK 313

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 48.7 bits (114), Expect = 2e-06
 Identities = 14/152 (9%), Positives = 37/152 (24%), Gaps = 12/152 (7%)

Query: 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396
             +  +    S P  +   P       +   V      E G  +   +            
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKL---VPRSMTSEAGEYDLNDMYKRSSPINVDPG 264

Query: 397 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456
                  ++   +  +  +     + +  A  + ++  Y            ++      +
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNL 317

Query: 457 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGA 488
            D+  S   K +  +   DD  I  +      
Sbjct: 318 TDLRLSADRKTV--MVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.8 bits (109), Expect = 1e-05
 Identities = 23/332 (6%), Positives = 62/332 (18%), Gaps = 42/332 (12%)

Query: 334 DLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGD-IGLWEVGSRERLVLRNFKVWDL 392
           D+  T    + +      +      +   + GT  GD +G+++  + +            
Sbjct: 30  DVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF 89

Query: 393 GA----------------------CSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH 430
                                           + +     +     S +       +   
Sbjct: 90  AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLK 149

Query: 431 IVQIYSYHGGDEVRQHLEIDAHVGG----VNDIAFSHPNKQLCVITCGDDKTIKVWDATN 486
             +   Y         +E            +D A +       +            D   
Sbjct: 150 HGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209

Query: 487 GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTT 546
               +      +  + +                          N   +            
Sbjct: 210 LNFSFE---VVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY 266

Query: 547 MAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGL 606
                  +            V         +  A +   +  +D+ + ++    +    L
Sbjct: 267 RMIIPLESSIL------IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL 320

Query: 607 PASPRIRFNKDGCLLAVSTNDNGIKILATSDG 638
             S       D   + V  +D  I        
Sbjct: 321 RLSA------DRKTVMVRKDDGKIYTFPLEKP 346

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 43.3 bits (100), Expect = 1e-04
 Identities = 20/178 (11%), Positives = 38/178 (21%), Gaps = 5/178 (2%)

Query: 848  PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVS 907
            P+     F P D ++IA        Q +   V            RI  +       V   
Sbjct: 3    PSKFAEDFSPLDGDLIAFVSRG---QAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFI 59

Query: 908  SGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE 967
             G      +   D    +  +F +                       F ++         
Sbjct: 60   HGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 968  TTKLECVKQWV--PRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINP 1023
            T      +  +     S      A            ++   + V+     K+      
Sbjct: 120  TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTE 177

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 42.2 bits (97), Expect = 3e-04
 Identities = 31/353 (8%), Positives = 78/353 (22%), Gaps = 20/353 (5%)

Query: 576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG--IKIL 633
             +A          D+    +L     +       R     D  +  +     G  + I 
Sbjct: 16  DLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVR--RGGDTKVAFIHGTREGDFLGIY 71

Query: 634 ATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMN 693
               G             A     N K  +                 +     V      
Sbjct: 72  DYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDL----ETGKPTVIERSRE 127

Query: 694 GDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA 753
             +                  K                    ++   KI      NS + 
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHG-----ETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182

Query: 754 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA 813
             A  +++ +L +   R+   S  +   + + ++   P  I +     +          +
Sbjct: 183 APAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTS 242

Query: 814 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQ 873
            +                 +   ++ +          +                +   + 
Sbjct: 243 EAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301

Query: 874 IYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQK 926
            Y+V+      K+      +T L  S     ++    D ++  +  +  E ++
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 28/259 (10%), Positives = 60/259 (23%), Gaps = 24/259 (9%)

Query: 416 WSP-DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCG 474
           +SP DG L     SR    I    G   ++           +  +      K   +    
Sbjct: 10  FSPLDGDLIAFV-SRGQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 475 DDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSR 534
           +   + ++D   G K   FE +   V+++          + +   +              
Sbjct: 64  EGDFLGIYDYRTG-KAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 535 VDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSV 594
                      T++ ++                      K+         +I  +DM+  
Sbjct: 123 ERSREAMITDFTISDNSRFI-------------AYGFPLKHGETDGYVMQAIHVYDMEGR 169

Query: 595 QLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASR 654
           +      A           F+ D   L   +  +                          
Sbjct: 170 K---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLI 226

Query: 655 TSENSKPTISPISAAAAAA 673
               +   + P S  + A 
Sbjct: 227 PGSPNPTKLVPRSMTSEAG 245

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 29/214 (13%), Positives = 50/214 (23%), Gaps = 16/214 (7%)

Query: 408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGD--EVRQHLEIDAHVGGVNDIAFSHPN 465
           G +V+    S  G    V      V +      +   V +                   +
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWED 120

Query: 466 KQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKA 525
           K              + D      + I             H +  +  I ++    +   
Sbjct: 121 KYAIA-GAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 179

Query: 526 WLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFL-AAGDD 583
            + +      VDY       TT   +            R L     D +   F+ AA   
Sbjct: 180 NVKETGKILLVDYTDLNNLKTTEISAE-----------RFLHDGGLDGSHRYFITAANAR 228

Query: 584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 617
             +   D    +L+   D  G  P   R      
Sbjct: 229 NKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVH 262

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (105), Expect = 5e-05
 Identities = 20/176 (11%), Positives = 48/176 (27%), Gaps = 23/176 (13%)

Query: 778 KATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTF 837
           + +  V       P+  M   D+               +N   V     G+I+L +  T+
Sbjct: 8   RESWKVHVAPEDRPTQQMNDWDL---------------ENLFSVTLRDAGQIALIDGSTY 52

Query: 838 KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK-GHSKRITGL 896
           +          A             + +   D  + + ++ + E  +  +         +
Sbjct: 53  EIKTVL-DTGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110

Query: 897 AFSHALN-----VLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQ 947
             S          +  +    Q  +   +  E +K +  +  T        + RV 
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 9/96 (9%), Positives = 21/96 (21%), Gaps = 5/96 (5%)

Query: 454 GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF 513
           G    +  + P         G   ++      +     I+  H             +  +
Sbjct: 18  GTAVVLGNT-PAGDKIQYCNGT--SVYTVPVGSLTDTEIYTEHSHQTTVAKTSP--SGYY 72

Query: 514 IFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAY 549
             S  + G ++ W        +    P         
Sbjct: 73  CASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDI 108

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.6 bits (111), Expect = 4e-06
 Identities = 14/106 (13%), Positives = 26/106 (24%), Gaps = 2/106 (1%)

Query: 850 ATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSG 909
           A  L   P   + I      S +    V           HS + T    S +     S  
Sbjct: 20  AVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77

Query: 910 ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHF 955
               + +W +          + + +G       D+  +        
Sbjct: 78  VHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG 123

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 7/61 (11%)

Query: 469 CVITCGDDKTIKVWDATNGAKQYIFEGH---EAPVYSVCPHHKENIQFIFSTALDGKIKA 525
            + +   DKTIK+W+      +         E     +        Q + S + +G I  
Sbjct: 252 KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINF 307

Query: 526 W 526
            
Sbjct: 308 V 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (101), Expect = 7e-05
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 1/89 (1%)

Query: 833 NMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSK- 891
               F+  +        + F      D   IA    D +I+I+NV   +V+  +   ++ 
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282

Query: 892 RITGLAFSHALNVLVSSGADSQLCVWSSD 920
               L        LVS  A+  +   + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.4 bits (95), Expect = 4e-04
 Identities = 31/275 (11%), Positives = 69/275 (25%), Gaps = 32/275 (11%)

Query: 385 RNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR 444
            +     +          +  +          SP G           V+I+       + 
Sbjct: 38  TSVYTVPV---GSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL 94

Query: 445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC 504
           +   I    G V DI++   +K++  +  G ++   V+    G       G    + SV 
Sbjct: 95  KT-TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVD 153

Query: 505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS 564
                  + I  +  +                 E      +             G     
Sbjct: 154 FKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTI 213

Query: 565 LGVVQFDTTK---------------------------NRFLAAGDDFSIKFWDMDSVQLL 597
           +     D TK                            +  +A  D +IK W++ ++++ 
Sbjct: 214 VLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 273

Query: 598 TSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
            +I     +    ++        L   + +  I  
Sbjct: 274 KTIPVGTRIE-DQQLGIIWTKQALVSISANGFINF 307

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.8 bits (104), Expect = 4e-05
 Identities = 31/263 (11%), Positives = 57/263 (21%), Gaps = 33/263 (12%)

Query: 407 PGVSVNRVIWSPDGSLFGVAYSRH----------IVQIYSYHGGDEVRQHLEIDAHVGGV 456
            G  +   + + DGS    A +             V+++              DA    V
Sbjct: 45  DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104

Query: 457 ----NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
                  + +   K L          + V D    A + + +  +               
Sbjct: 105 GTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT---- 160

Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWC------TTMAYSADGTRTYQGFRKRSLG 566
             F    DG +    +   G+                    AYS    R         + 
Sbjct: 161 -FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIH 219

Query: 567 VVQFDTTKNRFLAAGDDFSIKFWD---MDSVQLLTSIDADGGLPASPRIRFNKDGCLLAV 623
            +   +   +FL A +  +                +                        
Sbjct: 220 QIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR----IYLLVDQRDEWRH 275

Query: 624 STNDNGIKILATSDGIRLLRTFE 646
            T    + +L    G   L  FE
Sbjct: 276 KTASRFVVVLDAKTG-ERLAKFE 297

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.4 bits (103), Expect = 6e-05
 Identities = 21/192 (10%), Positives = 44/192 (22%), Gaps = 12/192 (6%)

Query: 310 NVLPVSFTGHSHSHSHSQAFSTPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG 369
                           +       ++  T               +      L+   T  G
Sbjct: 158 PDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWP-TYTG 216

Query: 370 DIGLWEVGSRERLVLRNFK-----VWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG 424
            I   ++ S +   L   +         G      Q          +   +       + 
Sbjct: 217 KIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIY--LLVDQRDEWR 274

Query: 425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA 484
              +   V +     G+ + +          ++ I  S   K L       DKT+ + DA
Sbjct: 275 HKTASRFVVVLDAKTGERLAKF----EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA 330

Query: 485 TNGAKQYIFEGH 496
            +G +       
Sbjct: 331 ESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (95), Expect = 4e-04
 Identities = 32/241 (13%), Positives = 60/241 (24%), Gaps = 49/241 (20%)

Query: 397 MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456
           + +       P       +   DGSL  VA+        ++                  +
Sbjct: 145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL-------I 197

Query: 457 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI--FEGHEAPVYSVCPHHKENIQFI 514
           N  A+S    +L   T      I   D ++G  +++   E       +         Q  
Sbjct: 198 NHPAYSQKAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVA 255

Query: 515 FS----------------TALDGKIKAWLYD-NLGSRVDYEAPGRWCTTMAYSADGTRTY 557
           +                           + D   G R+     G    ++  S D     
Sbjct: 256 YHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLL 315

Query: 558 QGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKD 617
                              +  +  D ++   D +S + L S++  G  P    I     
Sbjct: 316 -------------------YALSTGDKTLYIHDAESGEELRSVNQLGHGPQV--ITTADM 354

Query: 618 G 618
           G
Sbjct: 355 G 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 7e-04
 Identities = 30/375 (8%), Positives = 79/375 (21%), Gaps = 54/375 (14%)

Query: 526 WLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFS 585
           ++ D    RV     G +      + DG+                 T  +R         
Sbjct: 31  FVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHA-----------STVFSRIARGERTDY 79

Query: 586 IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTF 645
           ++ +D  ++     I                D     V T                L   
Sbjct: 80  VEVFDPVTLLPTADI-------------ELPDAPRFLVGTYPWMT----------SLTPD 116

Query: 646 ENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPR 705
                    +   +   +     A                 +     +       D    
Sbjct: 117 GKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----CYHIFPTAPDTFFMHCRDGSLA 171

Query: 706 ITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLL 765
                 + +     TE+  P     +  P               S  A   +       +
Sbjct: 172 KVAFGTEGTPEITHTEVFHPEDEFLINHP-------------AYSQKAGRLVWPTYTGKI 218

Query: 766 WKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS 825
            +   +  ++          +  +              +         + + D +    +
Sbjct: 219 HQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA 278

Query: 826 GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN-IIAIGMDDSSIQIYNVRVDEVKS 884
              + + +  T + +A F         +     +   + A+   D ++ I++    E   
Sbjct: 279 SRFVVVLDAKTGERLAKF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 337

Query: 885 KLKGHSKRITGLAFS 899
            +         +  +
Sbjct: 338 SVNQLGHGPQVITTA 352

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 42.9 bits (99), Expect = 1e-04
 Identities = 29/286 (10%), Positives = 65/286 (22%), Gaps = 47/286 (16%)

Query: 337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKV------- 389
             VT T+  GS+PM     P    + +   +  D+ + +  +   +              
Sbjct: 22  NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81

Query: 390 ---------------WDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQI 434
                                +     A     G S   +  SPDG    V  +      
Sbjct: 82  SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141

Query: 435 YSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE 494
                   V   + +     G+               +        V +           
Sbjct: 142 VINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN-----SVIDTV 196

Query: 495 GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT 554
             EA    +  + +    ++ +        + +             G     +A + DG 
Sbjct: 197 KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK 256

Query: 555 RTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI 600
           + Y                    +A     ++   D  +  +  ++
Sbjct: 257 KVY--------------------VALSFCNTVSVIDTATNTITATM 282

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 40.6 bits (93), Expect = 6e-04
 Identities = 10/91 (10%), Positives = 22/91 (24%), Gaps = 4/91 (4%)

Query: 409 VSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQL 468
            S   V      +                 G +++   + +         IA + P+ + 
Sbjct: 202 PSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG---PDPAGIAVT-PDGKK 257

Query: 469 CVITCGDDKTIKVWDATNGAKQYIFEGHEAP 499
             +      T+ V D             + P
Sbjct: 258 VYVALSFCNTVSVIDTATNTITATMAVGKNP 288

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.1 bits (95), Expect = 6e-04
 Identities = 7/88 (7%), Positives = 22/88 (25%), Gaps = 4/88 (4%)

Query: 412 NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVI 471
           + ++            +       +   G          ++    + I  +         
Sbjct: 276 DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGP----ISNGHDSDAIIAAQDGASDNYA 331

Query: 472 TCGDDKTIKVWDATNGAKQYIFEGHEAP 499
                + + ++DA +   Q   E  + P
Sbjct: 332 NSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.6 bits (91), Expect = 0.002
 Identities = 17/252 (6%), Positives = 54/252 (21%), Gaps = 27/252 (10%)

Query: 407 PGVSVNRVIWSPDGSLFGVA---YSR-------HIVQIYSYHGGDEVRQ----HLEIDAH 452
            G  ++  +    GS F +A   ++R         V+++       +           + 
Sbjct: 63  LGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSV 122

Query: 453 VGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQ 512
              V+ I     +  L +                 +   + +                  
Sbjct: 123 GPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH----PGAAAT 177

Query: 513 FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDT 572
               +     + A       +                +     + Q  +    G++ +  
Sbjct: 178 HYLGSC-PASLAASDLAAAPAAA-------GIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 573 TKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI 632
             +                           +        +   K+   + + T ++    
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 633 LATSDGIRLLRT 644
           LA ++    +  
Sbjct: 290 LAAAENTSSVTA 301

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 21/142 (14%), Positives = 37/142 (26%), Gaps = 13/142 (9%)

Query: 796 MTNDVTDSNPEEAVP-CFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 854
              +  D      V    A  K  ++          +      +      P P     L 
Sbjct: 206 TMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYI-PVPKNPHGLN 264

Query: 855 FHPQDNNIIAIGMDDSSIQIYNV-RVDEVKSKLKGHSKRITG----------LAFSHALN 903
             P     IA G    ++ +  + ++D++          I              F    N
Sbjct: 265 TSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGN 324

Query: 904 VLVSSGADSQLCVWSSDGWEKQ 925
              +   DSQ+C W+     K 
Sbjct: 325 AYTTLFIDSQVCKWNIADAIKH 346

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1102
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.87
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.85
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.77
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.72
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.59
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.51
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.4
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.25
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.17
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.13
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.99
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.96
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.92
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.89
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.87
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.83
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.83
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.8
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.78
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.71
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.33
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.28
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.28
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.23
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.91
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.75
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.75
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.72
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.71
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.69
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.59
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.59
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.59
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.53
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.51
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.49
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.46
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.4
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.37
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.28
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.22
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.19
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.17
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.05
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.42
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	96.33
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	95.11
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.88
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.54
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	94.52
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.0
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	93.92
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	92.77
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	92.76
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	91.42
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	88.63
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.99
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	85.66
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.28
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	84.01

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=329.70  Aligned_cols=294  Identities=13%  Similarity=0.162  Sum_probs=242.4

Q ss_pred             ccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          337 KTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       337 ~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      .+..+.++|...|+||+|||+|++ ||+|+ ||.|+|||+.+++....              .......+|.+.|.+++|
T Consensus        42 ~~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~  105 (337)
T d1gxra_          42 ARQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL  105 (337)
T ss_dssp             EEEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred             ceEEEECCCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence            345667789999999999999996 88887 89999999987643221              111235689999999999


Q ss_pred             ccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecC
Q 001311          417 SPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGH  496 (1102)
Q Consensus       417 spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h  496 (1102)
                      +|||++|++|+.|++|++||+...... ....+.+|...|.+++|+|++.  ++++++.|+.|++||+.++++.....+|
T Consensus       106 s~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         106 LPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             cCCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            999999999999999999999865432 2345788999999999999999  7999999999999999999999999999


Q ss_pred             CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCE
Q 001311          497 EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNR  576 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~  576 (1102)
                      ...|.+++|+  +++..+++++.|+.|++||+++++.+..+. +.                     ..+.+++++|++++
T Consensus       183 ~~~v~~l~~s--~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~---------------------~~i~~l~~~~~~~~  238 (337)
T d1gxra_         183 TDGASCIDIS--NDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FT---------------------SQIFSLGYCPTGEW  238 (337)
T ss_dssp             SSCEEEEEEC--TTSSEEEEEETTSEEEEEETTTTEEEEEEE-CS---------------------SCEEEEEECTTSSE
T ss_pred             cccccccccc--ccccccccccccccccccccccceeecccc-cc---------------------cceEEEEEcccccc
Confidence            9999999985  556899999999999999998765443322 22                     24566667777778


Q ss_pred             EEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccC
Q 001311          577 FLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTS  656 (1102)
Q Consensus       577 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~  656 (1102)
                      +++++.|+.|++||+.+++.....   .+...|.+++|+|++++|++++.||.|++||+.++. .+..+           
T Consensus       239 l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~-~~~~~-----------  303 (337)
T d1gxra_         239 LAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQS-----------  303 (337)
T ss_dssp             EEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEE-----------
T ss_pred             cceecccccccccccccccccccc---ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC-EEEEc-----------
Confidence            999999999999999988765443   334479999999999999999999999999987762 22111           


Q ss_pred             CCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCc
Q 001311          657 ENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPEN  736 (1102)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  736 (1102)
                                                                                                      
T Consensus       304 --------------------------------------------------------------------------------  303 (337)
T d1gxra_         304 --------------------------------------------------------------------------------  303 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccccceEEEEEccCCceEEEeecCceEEeeec
Q 001311          737 LRATKISRLIFTNSGNAILALASNAIHLLWKW  768 (1102)
Q Consensus       737 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~  768 (1102)
                      .|...|.+++|+|++++|++++.|+.|+|||+
T Consensus       304 ~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            15578999999999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5.9e-36  Score=328.07  Aligned_cols=305  Identities=17%  Similarity=0.303  Sum_probs=255.7

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWL  527 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd  527 (1102)
                      +|.||.++|++|+|+|+++  +|+||+.||+|+|||+.+++++.++.+|...|.+++|+  +++.++++++.++.+.+|+
T Consensus        12 ~L~GH~~~I~~l~~sp~~~--~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~--~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFD--HSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             EEECCSSCEEEEEECSSSS--EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEEC--TTSSEEEEEETTSCCCEEE
T ss_pred             EEcCCCCCeEEEEEcCCCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeee--ccccccccccccccccccc
Confidence            5899999999999999999  89999999999999999999999999999999999984  5668999999999999999


Q ss_pred             cCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCC
Q 001311          528 YDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLP  607 (1102)
Q Consensus       528 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  607 (1102)
                      .........+..+...+..+.                     ++++++.+++++.|+.+++||+.+++.+..+..+..  
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--  144 (317)
T d1vyhc1          88 FQGFECIRTMHGHDHNVSSVS---------------------IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--  144 (317)
T ss_dssp             TTSSCEEECCCCCSSCEEEEE---------------------ECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--
T ss_pred             ccccccccccccccccceeee---------------------ccCCCceEEeeccCcceeEeecccceeeeEEccCCC--
Confidence            887766665555555454444                     455556899999999999999999999998886644  


Q ss_pred             CcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccccccc
Q 001311          608 ASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMV  687 (1102)
Q Consensus       608 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  687 (1102)
                      .+.+++|++++.+|++++.|+.|++|+..++ .....+.                                         
T Consensus       145 ~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~~-----------------------------------------  182 (317)
T d1vyhc1         145 WVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELR-----------------------------------------  182 (317)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEEEEC-----------------------------------------
T ss_pred             cceeeecccCCCEEEEEeCCCeEEEEeeccc-eeeEEEe-----------------------------------------
Confidence            6889999999999999999999999998776 3332222                                         


Q ss_pred             ccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeee
Q 001311          688 SIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       688 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                                                                       ++...+..+.++|++........        
T Consensus       183 -------------------------------------------------~~~~~i~~~~~~~~~~~~~~~~~--------  205 (317)
T d1vyhc1         183 -------------------------------------------------EHRHVVECISWAPESSYSSISEA--------  205 (317)
T ss_dssp             -------------------------------------------------CCSSCEEEEEECCSCGGGGGGGC--------
T ss_pred             -------------------------------------------------cCCCCceEEEEeeccccceeecc--------
Confidence                                                             14556777888887653222111        


Q ss_pred             ccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC
Q 001311          768 WQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP  846 (1102)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~  846 (1102)
                                                             ..........++.++++++ |+.|++||+.+++++.++.+|
T Consensus       206 ---------------------------------------~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  246 (317)
T d1vyhc1         206 ---------------------------------------TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH  246 (317)
T ss_dssp             ---------------------------------------CSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred             ---------------------------------------ccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC
Confidence                                                   1122233445677888888 999999999999999999999


Q ss_pred             CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEE
Q 001311          847 PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWS  918 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd  918 (1102)
                      ...|.+++|+| ++++|++|+.||.|+|||+.+++++..+.+|.+.|++++|+|++++|++++.||+|+|||
T Consensus       247 ~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         247 DNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             SSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999 899999999999999999999999999999999999999999999999999999999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.8e-35  Score=320.77  Aligned_cols=306  Identities=16%  Similarity=0.311  Sum_probs=264.9

Q ss_pred             eeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          341 RTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       341 ~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      .+.+|.+.|++|+|+|++++ |+||+.||+|+|||+.+++.+.                   .+.+|.+.|.+++|+|++
T Consensus        12 ~L~GH~~~I~~l~~sp~~~~-l~s~s~Dg~i~iWd~~~~~~~~-------------------~~~~h~~~V~~~~~~~~~   71 (317)
T d1vyhc1          12 ALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSG   71 (317)
T ss_dssp             EEECCSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTS
T ss_pred             EEcCCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCcEEEEeeeccc
Confidence            45679999999999999995 9999999999999999998776                   378999999999999999


Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      .++++++.++.+.+|+....+...   .+.+|...+.++.|++++.  .+++++.|+.+++||+.+++.+..+.+|...+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  146 (317)
T d1vyhc1          72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV  146 (317)
T ss_dssp             SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred             cccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence            999999999999999998876544   4778999999999999999  79999999999999999999999999999999


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      .+++|+  +++.+|++++.|+.|++|++.+......+..+...+..+.+++++......... ..........+..++++
T Consensus       147 ~~~~~~--~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  223 (317)
T d1vyhc1         147 RMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT-GSETKKSGKPGPFLLSG  223 (317)
T ss_dssp             EEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCC-SCC-------CCEEEEE
T ss_pred             eeeecc--cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccc-cceeeeeccCCceeEec
Confidence            999874  566899999999999999999999999999999999999999988644333332 23334455567889999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      +.|+.|++||+.+++++..+..+..  .|.+++|+|++++|++++.||.|++||+.++ +.+..+.              
T Consensus       224 ~~d~~i~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~--------------  286 (317)
T d1vyhc1         224 SRDKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLN--------------  286 (317)
T ss_dssp             ETTSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEE--------------
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCCC--CEEEEEECCCCCEEEEEECCCeEEEEECCCC-cEEEEEc--------------
Confidence            9999999999999999999987644  7999999999999999999999999998876 3333332              


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                                  +|..
T Consensus       287 ----------------------------------------------------------------------------~h~~  290 (317)
T d1vyhc1         287 ----------------------------------------------------------------------------AHEH  290 (317)
T ss_dssp             ----------------------------------------------------------------------------CCSS
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        2667


Q ss_pred             ceEEEEEccCCceEEEeecCceEEeee
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                      .|++++|+|++++|++++.||.|++||
T Consensus       291 ~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         291 FVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            899999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-35  Score=322.71  Aligned_cols=282  Identities=14%  Similarity=0.196  Sum_probs=234.0

Q ss_pred             CCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceee--eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          406 DPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       406 ~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      +|...|.|++|||+|++||+|+ ||.|+|||+.++....  ......+|.+.|.+++|+||++  +|++|+.|+.|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence            7999999999999999999997 8999999998765433  2223557999999999999999  799999999999999


Q ss_pred             CCC--CeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccc
Q 001311          484 ATN--GAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFR  561 (1102)
Q Consensus       484 ~~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~  561 (1102)
                      +..  ++....+.+|...+..++|+  +++.++++++.|+.|++|++.+.+.......+...+.+++|            
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~------------  191 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAIS--PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI------------  191 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE------------
T ss_pred             ccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccc------------
Confidence            874  45667888999999998874  56689999999999999999987666665555555555555            


Q ss_pred             cCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311          562 KRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  641 (1102)
Q Consensus       562 ~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  641 (1102)
                               +++++.+++++.|+.|++||+++++.+..+...   ..|.+++|+|++++|++++.||.+++||+.++. .
T Consensus       192 ---------s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~-~  258 (337)
T d1gxra_         192 ---------SNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPD-K  258 (337)
T ss_dssp             ---------CTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSC-E
T ss_pred             ---------cccccccccccccccccccccccceeecccccc---cceEEEEEcccccccceeccccccccccccccc-c
Confidence                     445567999999999999999999988877633   358999999999999999999999999976541 0


Q ss_pred             eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311          642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  721 (1102)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~  721 (1102)
                      ...                                                                             
T Consensus       259 ~~~-----------------------------------------------------------------------------  261 (337)
T d1gxra_         259 YQL-----------------------------------------------------------------------------  261 (337)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            000                                                                             


Q ss_pred             CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311          722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  801 (1102)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  801 (1102)
                                                                                                      
T Consensus       262 --------------------------------------------------------------------------------  261 (337)
T d1gxra_         262 --------------------------------------------------------------------------------  261 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                       ..|...|.+++|+|++++|++++ ||.|++||+.+++.+..+. |...|.+++|+| ++++|++|+.||+|+|||+
T Consensus       262 -~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~s~-d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         262 -HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISV-DDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred             -cccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEE
Confidence             01566678888888888888888 8889999998888887765 778899999999 8999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.3e-34  Score=326.34  Aligned_cols=328  Identities=18%  Similarity=0.258  Sum_probs=252.3

Q ss_pred             EEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCce
Q 001311          363 LVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDE  442 (1102)
Q Consensus       363 asg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~  442 (1102)
                      ..+..++.+.+|+....+.....-               ....+|.+.|+||+|||||++||+|+ |++|+|||+.+++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l---------------~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~   95 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVEL---------------HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL   95 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEE---------------EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE
T ss_pred             cccCCCCcEEEeCCCCCcceeeee---------------EeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccce
Confidence            456677888999987654432100               01236999999999999999999986 89999999999876


Q ss_pred             eeeE---------------EEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeee
Q 001311          443 VRQH---------------LEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHH  507 (1102)
Q Consensus       443 ~~~~---------------~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~  507 (1102)
                      +...               ....+|...|++++|+|+++  +|++|+.||.|++||...++.+..+.+|...|.+++++ 
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~-  172 (388)
T d1erja_          96 VARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYF-  172 (388)
T ss_dssp             EEEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-
T ss_pred             EeeecccccccccccccccccccCCCCCEEEEEECCCCC--cceecccccccccccccccccccccccccccccccccc-
Confidence            5432               11235777899999999999  89999999999999999999999999999999999985 


Q ss_pred             cCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEE
Q 001311          508 KENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIK  587 (1102)
Q Consensus       508 ~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  587 (1102)
                       +++..+++++.++.|++||..+.........+..                     ......+.+++++|++++.|+.|+
T Consensus       173 -~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~d~~i~  230 (388)
T d1erja_         173 -PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---------------------VTTVAVSPGDGKYIAAGSLDRAVR  230 (388)
T ss_dssp             -TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC---------------------EEEEEECSTTCCEEEEEETTSCEE
T ss_pred             -cccccccccccceeeeeeeccccccccccccccc---------------------cccccccCCCCCeEEEEcCCCeEE
Confidence             4567999999999999999987554443333222                     222233344567899999999999


Q ss_pred             EEECCCcceEEEEcC-----CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCC
Q 001311          588 FWDMDSVQLLTSIDA-----DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPT  662 (1102)
Q Consensus       588 iwd~~~~~~~~~~~~-----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  662 (1102)
                      +||..++..+..+..     ..+...|.+++|+|++++|++++.||.|++||+.++... .....               
T Consensus       231 i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~---------------  294 (388)
T d1erja_         231 VWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK-SDSKT---------------  294 (388)
T ss_dssp             EEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------------------
T ss_pred             EeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccc-ccccc---------------
Confidence            999999988776642     233457899999999999999999999999998766211 10000               


Q ss_pred             cccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccce
Q 001311          663 ISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKI  742 (1102)
Q Consensus       663 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i  742 (1102)
                                                                                                 .    
T Consensus       295 ---------------------------------------------------------------------------~----  295 (388)
T d1erja_         295 ---------------------------------------------------------------------------P----  295 (388)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---------------------------------------------------------------------------c----
Confidence                                                                                       0    


Q ss_pred             EEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311          743 SRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  822 (1102)
Q Consensus       743 ~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la  822 (1102)
                            ..+.         ....+                                    ..|...|.+++|+|++++|+
T Consensus       296 ------~~~~---------~~~~~------------------------------------~~~~~~v~~~~~s~~~~~l~  324 (388)
T d1erja_         296 ------NSGT---------CEVTY------------------------------------IGHKDFVLSVATTQNDEYIL  324 (388)
T ss_dssp             ---------C---------EEEEE------------------------------------ECCSSCEEEEEECGGGCEEE
T ss_pred             ------cccc---------eeeec------------------------------------ccccceEEEEEECCCCCEEE
Confidence                  0000         00000                                    01778899999999999999


Q ss_pred             EEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEE------ecCCCcEEEEEeCCCcEEEEEee
Q 001311          823 SAS-GGKISLFNMMTFKTMATFMPPPPAATFLAF------HPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       823 s~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~------sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                      +|+ ||.|++||+.+++++.++.+|.+.|+++++      +| ++++||+|+.||+|+||+++
T Consensus       325 sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~sp-d~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         325 SGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT-TCEEEEEEETTSEEEEEEEE
T ss_pred             EEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCC-CCCEEEEEeCCCEEEEEeee
Confidence            998 899999999999999999999999999985      56 78999999999999999986

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.5e-34  Score=320.92  Aligned_cols=341  Identities=18%  Similarity=0.291  Sum_probs=251.6

Q ss_pred             ccCCCCCCe-EEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEE
Q 001311          403 LVKDPGVSV-NRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKV  481 (1102)
Q Consensus       403 ~~~~h~~~V-~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~v  481 (1102)
                      .+.||.+.| +|++  +|+++||+|+.||+|+|||+.+++.+.   ++.+|.++|++++|++++   +|++|+.|++|++
T Consensus         7 tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~i   78 (355)
T d1nexb2           7 TLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV   78 (355)
T ss_dssp             EEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEEE
T ss_pred             EECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEeccccccc
Confidence            588999886 5554  568999999999999999999988665   588999999999999865   5999999999999


Q ss_pred             EeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCc-eeeecc
Q 001311          482 WDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGT-RTYQGF  560 (1102)
Q Consensus       482 Wd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~~~~~  560 (1102)
                      |++...+.......+............+++.++++++.|+.|++||+.+.............. .....+... ......
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYP-LVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCC-EEESCTTTCTTEEEEE
T ss_pred             ccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceec-cceeccccccceeeee
Confidence            999999988877766666655555556778899999999999999998765544332221111 111111111 111122


Q ss_pred             ccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCcc
Q 001311          561 RKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       561 ~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                      .........+.++++.++++..|+.|++||+.+++.+.....+..  .+.++.+++++.++++++.|+.|++|+..++ .
T Consensus       158 ~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~  234 (355)
T d1nexb2         158 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIYDHERKRCISASMDTTIRIWDLENG-E  234 (355)
T ss_dssp             ECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEETTTTEEEEEETTSCEEEEETTTC-C
T ss_pred             eeccccccccccccceeeeecccceeeeeecccccceeeeecccc--ccccccccccceeeecccccceEEeeecccc-c
Confidence            222333455667788999999999999999999998888875543  6788999999999999999999999998765 2


Q ss_pred             ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311          641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  720 (1102)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~  720 (1102)
                      .+..+.                                                                          
T Consensus       235 ~~~~~~--------------------------------------------------------------------------  240 (355)
T d1nexb2         235 LMYTLQ--------------------------------------------------------------------------  240 (355)
T ss_dssp             EEEEEC--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            211111                                                                          


Q ss_pred             cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311          721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  800 (1102)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  800 (1102)
                                                                                                      
T Consensus       241 --------------------------------------------------------------------------------  240 (355)
T d1nexb2         241 --------------------------------------------------------------------------------  240 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEE-EecCCCcEEEEEeCCCcEEEEEee
Q 001311          801 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLA-FHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       801 ~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~-~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                         +|...|.+++++  +++|++++ ||.|++||+.++...  +..|...+.+++ +++ ++++|++|+ ||.|+|||++
T Consensus       241 ---~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~-~~~~l~~g~-d~~i~vwd~~  311 (355)
T d1nexb2         241 ---GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK--FSYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNLR  311 (355)
T ss_dssp             ---CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE--EEEECTTCCCCCEEEE-CSSEEEEEE-TTEEEEEETT
T ss_pred             ---cccccccccccc--cceeeeeeccccccccccccccee--cccccCCceEEEEEcC-CCCEEEEEe-CCEEEEEECC
Confidence               155556666664  45777777 888888888776543  344555566554 556 777777665 8999999999


Q ss_pred             cceeee-eeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          879 VDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       879 ~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      +++++. .+.+|.+.|++++|+|+ .++++++.||+++||.+
T Consensus       312 tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            999875 57889999999999986 57888999999777654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.1e-34  Score=311.29  Aligned_cols=255  Identities=15%  Similarity=0.172  Sum_probs=211.3

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      +.+.+.+++++|+|+. |+.++ ++.|.+||+.+++...                   .+.+|.+.|++++|+|||++||
T Consensus        16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la   74 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA   74 (311)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred             CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence            5567789999999997 55554 5789999999887665                   4789999999999999999999


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC--CCcEEEEeCCCCeeeEEeecCCCCeEE
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD--DKTIKVWDATNGAKQYIFEGHEAPVYS  502 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~--d~~i~vWd~~~~~~~~~~~~h~~~v~~  502 (1102)
                      +|+.||+|+|||+.+++.... ..+.+|.++|.+++|+|+++  ++++++.  ++.++||++++++.+..+.+|...|.+
T Consensus        75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~  151 (311)
T d1nr0a1          75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS  151 (311)
T ss_dssp             EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred             ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence            999999999999998875432 35788999999999999999  6777664  567999999999999999999999999


Q ss_pred             EeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeC
Q 001311          503 VCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGD  582 (1102)
Q Consensus       503 v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  582 (1102)
                      ++|+++.+ ..|++|+.|+.|++||+++.+....+..+...|.++.                     ++|+++++++++.
T Consensus       152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~---------------------~~p~~~~l~~~~~  209 (311)
T d1nr0a1         152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVR---------------------YNPDGSLFASTGG  209 (311)
T ss_dssp             EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEE---------------------ECTTSSEEEEEET
T ss_pred             ccccccce-eeecccccccccccccccccccccccccccccccccc---------------------cCccccccccccc
Confidence            99865432 3688999999999999998766666665555555554                     5555568999999


Q ss_pred             CCeEEEEECCCcceEEEEcCC-----CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311          583 DFSIKFWDMDSVQLLTSIDAD-----GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       583 dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                      |+.|++||+.++..+..+...     ++...|.+++|+|++++|++|+.||.|++||+.++ ++++.+.
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~-~~~~~l~  277 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL-KVEKTIP  277 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC-cEEEEEE
Confidence            999999999999888776532     23457999999999999999999999999999888 5555554

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-33  Score=320.52  Aligned_cols=329  Identities=16%  Similarity=0.248  Sum_probs=247.8

Q ss_pred             EEEECCCeEEEEEccCCceee-eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee--------
Q 001311          424 GVAYSRHIVQIYSYHGGDEVR-QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE--------  494 (1102)
Q Consensus       424 as~~~d~~v~vwd~~~~~~~~-~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~--------  494 (1102)
                      ..+..++.+.+|+....+.+. .+....+|.+.|+||+|+|||+  +|++|+ |++|+|||+.+++.+..+.        
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~  108 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD  108 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence            456778889999987655432 2223447999999999999999  788887 8999999999998887664        


Q ss_pred             ----------cCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311          495 ----------GHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  564 (1102)
Q Consensus       495 ----------~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  564 (1102)
                                +|...|.+++|+  +++++|++|+.||.|++||....+....+..|...|.++.++++            
T Consensus       109 ~~~~~~~~~~~~~~~V~~l~~s--~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~------------  174 (388)
T d1erja_         109 PENLNTSSSPSSDLYIRSVCFS--PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS------------  174 (388)
T ss_dssp             ----------CCCCBEEEEEEC--TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT------------
T ss_pred             ccccccccccCCCCCEEEEEEC--CCCCcceecccccccccccccccccccccccccccccccccccc------------
Confidence                      456679999985  56789999999999999999987777666666666655555554            


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCcccee
Q 001311          565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIRLLR  643 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~  643 (1102)
                               +..+++++.++.|++||..+.........+..   ..++.+.+ ++.+|++++.||.|++|+..++ ....
T Consensus       175 ---------~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~-~~~~  241 (388)
T d1erja_         175 ---------GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG---VTTVAVSPGDGKYIAAGSLDRAVRVWDSETG-FLVE  241 (388)
T ss_dssp             ---------SSEEEEEETTSEEEEEETTTTEEEEEEECSSC---EEEEEECSTTCCEEEEEETTSCEEEEETTTC-CEEE
T ss_pred             ---------cccccccccceeeeeeeccccccccccccccc---cccccccCCCCCeEEEEcCCCeEEEeecccC-ccce
Confidence                     45789999999999999999888777765443   44555555 8899999999999999998877 2222


Q ss_pred             ecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCC
Q 001311          644 TFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELS  723 (1102)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~  723 (1102)
                      .+.....                                                                         
T Consensus       242 ~~~~~~~-------------------------------------------------------------------------  248 (388)
T d1erja_         242 RLDSENE-------------------------------------------------------------------------  248 (388)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             eeccccc-------------------------------------------------------------------------
Confidence            2211000                                                                         


Q ss_pred             CCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCC
Q 001311          724 EPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDS  803 (1102)
Q Consensus       724 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  803 (1102)
                                ...+|...|.+++|+|+++.|++++.|+.+++|++...                      ....      
T Consensus       249 ----------~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~----------------------~~~~------  290 (388)
T d1erja_         249 ----------SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA----------------------NNKS------  290 (388)
T ss_dssp             ------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-----------------------------------
T ss_pred             ----------cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCC----------------------cccc------
Confidence                      00225667777777777777777777777777765211                      0000      


Q ss_pred             CCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee
Q 001311          804 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK  883 (1102)
Q Consensus       804 ~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~  883 (1102)
                             ..                   .....+........|...|.+++|+| ++++|++|+.||.|++||+.+++++
T Consensus       291 -------~~-------------------~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~~  343 (388)
T d1erja_         291 -------DS-------------------KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPL  343 (388)
T ss_dssp             ----------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCEE
T ss_pred             -------cc-------------------ccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcEE
Confidence                   00                   00012233445566888999999999 8999999999999999999999999


Q ss_pred             eeeccccccceeEEE------ecCCCEEEEEcCCCcEEEEEcC
Q 001311          884 SKLKGHSKRITGLAF------SHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       884 ~~l~~h~~~V~~l~~------s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      ..+.+|.+.|+++++      +||+++||||+.||+|+||+++
T Consensus       344 ~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999999999999975      6789999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.7e-33  Score=307.01  Aligned_cols=284  Identities=12%  Similarity=0.118  Sum_probs=233.0

Q ss_pred             cccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecC
Q 001311          738 RATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKN  817 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d  817 (1102)
                      +.+....++++|+|+.++.+. ++.+.+|++..                      +..... +.  +|...|++++|+|+
T Consensus        16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~----------------------~~~~~~-~~--~H~~~v~~~~~sp~   69 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS----------------------LTDTEI-YT--EHSHQTTVAKTSPS   69 (311)
T ss_dssp             CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTC----------------------SSCCEE-EC--CCSSCEEEEEECTT
T ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCC----------------------CceeEE-Ec--CCCCCEEEEEEeCC
Confidence            345666789999999888764 56788888632                      222111 22  38999999999999


Q ss_pred             CCeEEEEe-CCeEEEEEcCCCcee--eeecCCCCCeeEEEEecCCCcEEEEEeCC--CcEEEEEeecceeeeeecccccc
Q 001311          818 DSYVMSAS-GGKISLFNMMTFKTM--ATFMPPPPAATFLAFHPQDNNIIAIGMDD--SSIQIYNVRVDEVKSKLKGHSKR  892 (1102)
Q Consensus       818 ~~~las~s-dg~I~iwd~~~~~~~--~~~~~~~~~i~~l~~sp~d~~~lasg~~d--g~v~vwd~~~~~~~~~l~~h~~~  892 (1102)
                      |++||+|+ ||+|++||+.+....  ..+..|...|.+++|+| ++++|++++.+  ..++||++.+++....+.+|.+.
T Consensus        70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~  148 (311)
T d1nr0a1          70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS-ESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA  148 (311)
T ss_dssp             SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECT-TSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSC
T ss_pred             CCeEeccccCceEeeeeeeccccccccccccccCccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            99999999 999999999887654  55788999999999999 89999988764  56999999999999999999999


Q ss_pred             ceeEEEecCCCE-EEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCC
Q 001311          893 ITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTK  970 (1102)
Q Consensus       893 V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~  970 (1102)
                      |++++|+|++++ |++|+.|+.|++||+++++.     .....+|.   ..|.++.|+|++++++++ .|+.|++||..+
T Consensus       149 v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-----~~~~~~~~---~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~  220 (311)
T d1nr0a1         149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----KSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVD  220 (311)
T ss_dssp             EEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----EEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             cccccccccceeeeccccccccccccccccccc-----cccccccc---ccccccccCcccccccccccccccccccccc
Confidence            999999999885 88999999999999998553     33444444   478999999999999985 799999999999


Q ss_pred             ceEeeeecc-----CCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecC
Q 001311          971 LECVKQWVP-----RESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHP 1045 (1102)
Q Consensus       971 ~~~~~~~~~-----~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p 1045 (1102)
                      +.....+..     .+|...|++++|+||+++|++|+.||+|+|||+.+++++..+...       .......+++.|+ 
T Consensus       221 ~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~-------~~~~~~~~~~~~~-  292 (311)
T d1nr0a1         221 GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG-------TRIEDQQLGIIWT-  292 (311)
T ss_dssp             CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECC-------SSGGGCEEEEEEC-
T ss_pred             ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECC-------CCccceEEEEEec-
Confidence            888776643     368899999999999999999999999999999999999888722       1211333355554 


Q ss_pred             CCCCEEEEEecCCcEEEEecc
Q 001311         1046 QEPNEFALGLSDGGVHVFEPL 1066 (1102)
Q Consensus      1046 ~d~~~l~s~~~Dg~v~vW~~~ 1066 (1102)
                        ++.|++++.||.|++||++
T Consensus       293 --~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         293 --KQALVSISANGFINFVNPE  311 (311)
T ss_dssp             --SSCEEEEETTCCEEEEETT
T ss_pred             --CCEEEEEECCCEEEEEeCC
Confidence              4689999999999999974

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-33  Score=308.87  Aligned_cols=346  Identities=14%  Similarity=0.177  Sum_probs=262.5

Q ss_pred             eEEeecCCCCe-EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEE
Q 001311          490 QYIFEGHEAPV-YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVV  568 (1102)
Q Consensus       490 ~~~~~~h~~~v-~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~  568 (1102)
                      ..+|+||...| +|+.+  +  +++|++|+.||+|++||+.+++.+..+.+|...|.+++|++++               
T Consensus         5 ~~tL~GH~~~vitc~~~--~--~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~---------------   65 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQF--E--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG---------------   65 (355)
T ss_dssp             EEEEECCSSSCEEEEEE--E--TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT---------------
T ss_pred             cEEECCcCCCcEEEEEE--C--CCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC---------------
Confidence            46789998886 55543  3  4699999999999999999988888888888888877777654               


Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccc
Q 001311          569 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  648 (1102)
Q Consensus       569 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  648 (1102)
                             +|++++.|+.|++|+....+..................+.+++.++++++.|+.|++|++.+... .......
T Consensus        66 -------~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~-~~~~~~~  137 (355)
T d1nexb2          66 -------ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS-VPDHGEE  137 (355)
T ss_dssp             -------EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------
T ss_pred             -------EEEEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCce-ecccccc
Confidence                   49999999999999999998887776655544555677889999999999999999999876621 1111000


Q ss_pred             cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcc
Q 001311          649 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  728 (1102)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~  728 (1102)
                      ..                                                                              
T Consensus       138 ~~------------------------------------------------------------------------------  139 (355)
T d1nexb2         138 HD------------------------------------------------------------------------------  139 (355)
T ss_dssp             -C------------------------------------------------------------------------------
T ss_pred             ce------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             ccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCC
Q 001311          729 RSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  808 (1102)
Q Consensus       729 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  808 (1102)
                                   .......+......       +....                                    .|...
T Consensus       140 -------------~~~~~~~~~~~~~~-------~~~~~------------------------------------~~~~~  163 (355)
T d1nexb2         140 -------------YPLVFHTPEENPYF-------VGVLR------------------------------------GHMAS  163 (355)
T ss_dssp             -------------CCEEESCTTTCTTE-------EEEEE------------------------------------CCSSC
T ss_pred             -------------eccceeccccccce-------eeeee------------------------------------ecccc
Confidence                         00000000000000       00000                                    02332


Q ss_pred             eeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311          809 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  887 (1102)
                      +  ..+.+++++++++. |+.|++||+.+++.+....++...+.++.|++ ++.++++++.||.|++||+.++..+..+.
T Consensus       164 v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  240 (355)
T d1nexb2         164 V--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQ  240 (355)
T ss_dssp             E--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             c--cccccccceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeeccccccccccc
Confidence            3  34556788999888 89999999999999999999999999999999 89999999999999999999999999999


Q ss_pred             cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEE
Q 001311          888 GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFE  967 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd  967 (1102)
                      +|...|.+++|+  +++|++++.||+|++||+.+....    ...   |..  .......+++++++++++.|+.|++||
T Consensus       241 ~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~----~~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd  309 (355)
T d1nexb2         241 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK----FSY---HHT--NLSAITTFYVSDNILVSGSENQFNIYN  309 (355)
T ss_dssp             CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEE----EEE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEE
T ss_pred             cccccccccccc--cceeeeeeccccccccccccccee----ccc---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEE
Confidence            999999999986  579999999999999999875431    221   111  122345678899999989999999999


Q ss_pred             cCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEc
Q 001311          968 TTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSA 1012 (1102)
Q Consensus       968 ~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~ 1012 (1102)
                      +++++++.... .+|...|++++|+|+ .++++++.||.++||.+
T Consensus       310 ~~tg~~~~~~~-~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~  352 (355)
T d1nexb2         310 LRSGKLVHANI-LKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL  352 (355)
T ss_dssp             TTTCCBCCSCT-TTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred             CCCCCEEEEEe-cCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence            99999876533 378999999999987 57888999999777654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.1e-32  Score=300.28  Aligned_cols=288  Identities=15%  Similarity=0.258  Sum_probs=234.6

Q ss_pred             eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeE
Q 001311          444 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI  523 (1102)
Q Consensus       444 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i  523 (1102)
                      +..++|.||.+.|++|+|+|+++  +|+||+.||+|+|||+.+++.+..+.+|...|.+++|+  +++.++++|+.|+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~--~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~--~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSR--LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA--PSGNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSS--EEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEEC--TTSSEEEEEETTCCE
T ss_pred             eeeEEECCCCCCEEEEEECCCCC--EEEEEECCCceeeeecccceeEEEEecccccEEeeEee--ccceeeeeeccccee
Confidence            34457999999999999999999  89999999999999999999999999999999999984  566899999999999


Q ss_pred             EEEEcCCCCCee----eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q 001311          524 KAWLYDNLGSRV----DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS  599 (1102)
Q Consensus       524 ~~wd~~~~~~~~----~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  599 (1102)
                      ++|+........    .+..+.......                      ....+..+.....+.....|..........
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCC----------------------RFLDDNQIVTSSGDTTCALWDIETGQQTTT  179 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEE----------------------EEEETTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             ecccccccccccccceeccccccccccc----------------------cccccccccccccccccccccccccccccc
Confidence            999987644322    222222222222                      222234577888899999999887776666


Q ss_pred             EcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccc
Q 001311          600 IDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGL  679 (1102)
Q Consensus       600 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (1102)
                      .....  ..+....+.+.+.++++++.|+.|++||+.++ ..+..+.                                 
T Consensus       180 ~~~~~--~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~-~~~~~~~---------------------------------  223 (340)
T d1tbga_         180 FTGHT--GDVMSLSLAPDTRLFVSGACDASAKLWDVREG-MCRQTFT---------------------------------  223 (340)
T ss_dssp             EECCS--SCEEEEEECTTSSEEEEEETTTEEEEEETTTT-EEEEEEC---------------------------------
T ss_pred             ccccc--eeEeeeccccccceeEEeecCceEEEEECCCC-cEEEEEe---------------------------------
Confidence            55443  36788899999999999999999999997665 2111110                                 


Q ss_pred             ccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec
Q 001311          680 ADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS  759 (1102)
Q Consensus       680 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~  759 (1102)
                                                                                                      
T Consensus       224 --------------------------------------------------------------------------------  223 (340)
T d1tbga_         224 --------------------------------------------------------------------------------  223 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCc
Q 001311          760 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK  838 (1102)
Q Consensus       760 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~  838 (1102)
                                                                  +|...|.+++|+|++++|++++ |+.|++|++....
T Consensus       224 --------------------------------------------~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~  259 (340)
T d1tbga_         224 --------------------------------------------GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             --------------------------------------------CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             --------------------------------------------CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc
Confidence                                                        1566677888888888888887 7888888888777


Q ss_pred             eeeee--cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEE
Q 001311          839 TMATF--MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCV  916 (1102)
Q Consensus       839 ~~~~~--~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~v  916 (1102)
                      ....+  ..+...|++++|+| ++++|++|+.||.|++||+.+++++..+.+|.+.|++|+|+||+++|+||+.||+|+|
T Consensus       260 ~~~~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~i  338 (340)
T d1tbga_         260 ELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI  338 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECS-SSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEE
T ss_pred             cccccccccccCceEEEEECC-CCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEE
Confidence            76654  34567799999999 8999999999999999999999999999999999999999999999999999999999


Q ss_pred             EE
Q 001311          917 WS  918 (1102)
Q Consensus       917 wd  918 (1102)
                      ||
T Consensus       339 Wd  340 (340)
T d1tbga_         339 WN  340 (340)
T ss_dssp             EC
T ss_pred             eC
Confidence            97

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.4e-33  Score=311.28  Aligned_cols=209  Identities=13%  Similarity=0.190  Sum_probs=162.5

Q ss_pred             CCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCC
Q 001311          408 GVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNG  487 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~  487 (1102)
                      .++|+|++|||||++||+|+.|+.|+|||+++++. .....+.+|.++|.+|+|+|+++  +|++|+.|++|+|||+.++
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~-~~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-VQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-EEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE-EEEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence            46899999999999999999999999999998763 34557899999999999999999  8999999999999999887


Q ss_pred             eee--EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCce
Q 001311          488 AKQ--YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSL  565 (1102)
Q Consensus       488 ~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i  565 (1102)
                      ...  ..+.+|...|.+++|+  +++++|++++.|++|++|++..........                 .........+
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~--p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-----------------~~~~~~~~~v  144 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWA--PNEKKFAVGSGSRVISICYFEQENDWWVCK-----------------HIKKPIRSTV  144 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEEC--TTSSEEEEEETTSSEEEEEEETTTTEEEEE-----------------EECTTCCSCE
T ss_pred             ccccccccccccccccccccc--cccccceeecccCcceeeeeeccccccccc-----------------cccccccccc
Confidence            654  4567899999999985  566899999999999999988755432211                 0011112356


Q ss_pred             eEEEEcCCCCEEEEEeCCCeEEEEECCCcceE----------------EEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc
Q 001311          566 GVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLL----------------TSIDADGGLPASPRIRFNKDGCLLAVSTNDNG  629 (1102)
Q Consensus       566 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----------------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~  629 (1102)
                      .+++|+|++++|++++.|+.|++|+.......                .......+...|.+++|+|++++|++++.|+.
T Consensus       145 ~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~  224 (371)
T d1k8kc_         145 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST  224 (371)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE
T ss_pred             ccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc
Confidence            66777777788999999999999998654311                11222334446777888888888888888888


Q ss_pred             EEEEEccCC
Q 001311          630 IKILATSDG  638 (1102)
Q Consensus       630 i~iwd~~~~  638 (1102)
                      |++||+.++
T Consensus       225 i~iwd~~~~  233 (371)
T d1k8kc_         225 VCLADADKK  233 (371)
T ss_dssp             EEEEEGGGT
T ss_pred             ceEEeeecc
Confidence            888876554

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-32  Score=298.51  Aligned_cols=317  Identities=18%  Similarity=0.283  Sum_probs=247.9

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      ++.||.+.|.+ +++++|++||||+.||+|+|||+.+++.+.   ++.+|.+.|.+++|+++    +|++|+.|+.+++|
T Consensus        11 ~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~---~~~~h~~~V~~v~~~~~----~l~s~s~D~~~~~~   82 (342)
T d2ovrb2          11 VLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMRDN----IIISGSTDRTLKVW   82 (342)
T ss_dssp             EEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEETT----EEEEEETTSCEEEE
T ss_pred             EECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE---EEeCCCCCEEEEEeCCC----ccccceeccccccc
Confidence            68899999875 477789999999999999999999998665   58899999999999874    69999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      +............+...+.....  ..  ..+..+..|+.+.+|+..+......+.......                  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~------------------  140 (342)
T d2ovrb2          83 NAETGECIHTLYGHTSTVRCMHL--HE--KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV------------------  140 (342)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEE--ET--TEEEEEETTSEEEEEESSSCCEEEEEECCSSCE------------------
T ss_pred             ccccccceecccccceeEeeeec--cc--ccccccccceeEEEeecccccceeeeecccccc------------------
Confidence            99998888877777777765543  22  478889999999999998866554443322211                  


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  642 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  642 (1102)
                           .........+++++.|+.|++||....+.+..+..+.    .....+++++.++++++.||.|++||+..+ +.+
T Consensus       141 -----~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~-~~~  210 (342)
T d2ovrb2         141 -----RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETG-NCI  210 (342)
T ss_dssp             -----EEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTC-CEE
T ss_pred             -----eeeccccceeeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccc-eee
Confidence                 1122233568899999999999999998888887653    344666778999999999999999997655 211


Q ss_pred             eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                      ..+.                                                                            
T Consensus       211 ~~~~----------------------------------------------------------------------------  214 (342)
T d2ovrb2         211 HTLT----------------------------------------------------------------------------  214 (342)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             eEec----------------------------------------------------------------------------
Confidence            1110                                                                            


Q ss_pred             CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (342)
T d2ovrb2         215 --------------------------------------------------------------------------------  214 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecC---CCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311          803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMP---PPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~---~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                       +|...+.+++++  +++|++++ |+.|++||+...+....+..   |...+.++.++   ++++++|+.||.|+|||+.
T Consensus       215 -~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         215 -GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             -CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETT
T ss_pred             -ccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC---CCeeEEEcCCCEEEEEECC
Confidence             034445555544  45788887 88899999888877777654   44556666664   4699999999999999999


Q ss_pred             cceeeeeec-----cccccceeEEEecCCCEEEEEcCCCc----EEEEEcCC
Q 001311          879 VDEVKSKLK-----GHSKRITGLAFSHALNVLVSSGADSQ----LCVWSSDG  921 (1102)
Q Consensus       879 ~~~~~~~l~-----~h~~~V~~l~~s~d~~~l~s~s~Dg~----i~vwd~~~  921 (1102)
                      ++++++.+.     +|.+.|++++|+|++.+|++|+.||+    |++||++.
T Consensus       289 tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence            999887763     58889999999999999999999986    99999864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9e-32  Score=298.28  Aligned_cols=289  Identities=18%  Similarity=0.289  Sum_probs=244.5

Q ss_pred             eccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCC
Q 001311          342 TLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGS  421 (1102)
Q Consensus       342 ~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~  421 (1102)
                      +.+|.+.|++|+|+|++++ ||||+.||+|+|||+.+++.+..                   +..|...|.+++|+|+++
T Consensus        51 L~GH~~~I~~l~~s~~~~~-l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~~~~~~~  110 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRL-LVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCAYAPSGN  110 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSE-EEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEEECTTSS
T ss_pred             ECCCCCCEEEEEECCCCCE-EEEEECCCceeeeecccceeEEE-------------------EecccccEEeeEeeccce
Confidence            4469999999999999996 99999999999999999988763                   678999999999999999


Q ss_pred             eEEEEECCCeEEEEEccCCcee-eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          422 LFGVAYSRHIVQIYSYHGGDEV-RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       422 ~las~~~d~~v~vwd~~~~~~~-~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      ++++|+.|+.+++|+....... .....+.+|...........+.   .+.....|.....|+............+...+
T Consensus       111 ~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (340)
T d1tbga_         111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTGHTGDV  187 (340)
T ss_dssp             EEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEECCSSCE
T ss_pred             eeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccccceeE
Confidence            9999999999999998765432 2334577888887777776655   47888889999999999888888888888888


Q ss_pred             EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE
Q 001311          501 YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       501 ~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      ....+  .+.+.++++++.|+.|++||+++......+..|...|.+++|+|+                     +++|+++
T Consensus       188 ~~~~~--~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~---------------------~~~l~s~  244 (340)
T d1tbga_         188 MSLSL--APDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPN---------------------GNAFATG  244 (340)
T ss_dssp             EEEEE--CTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTT---------------------SSEEEEE
T ss_pred             eeecc--ccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCC---------------------CCEEEEE
Confidence            87776  445579999999999999999988777777666665555555554                     4589999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      +.|+.|++||+.....+..+....+...+.+++|+|++++|++|+.||.|++||+.++ +.+..+.              
T Consensus       245 s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~~--------------  309 (340)
T d1tbga_         245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLA--------------  309 (340)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC-CEEEEEC--------------
T ss_pred             eCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC-cEEEEEc--------------
Confidence            9999999999999998888876666677999999999999999999999999998877 3333332              


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                                  +|..
T Consensus       310 ----------------------------------------------------------------------------~H~~  313 (340)
T d1tbga_         310 ----------------------------------------------------------------------------GHDN  313 (340)
T ss_dssp             ----------------------------------------------------------------------------CCSS
T ss_pred             ----------------------------------------------------------------------------CCCC
Confidence                                                                                        2677


Q ss_pred             ceEEEEEccCCceEEEeecCceEEeee
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWK  767 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~  767 (1102)
                      .|.+++|+|++++|++++.||.|++||
T Consensus       314 ~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         314 RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            899999999999999999999999996

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-32  Score=308.81  Aligned_cols=263  Identities=12%  Similarity=0.076  Sum_probs=206.6

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      .++|+|++|||||++ ||+|+.|+.|+|||+.+++.....                 .+.+|.++|.+++|+|++++|++
T Consensus         7 ~~pIt~~~~s~dg~~-la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s   68 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT   68 (371)
T ss_dssp             SSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCCE-EEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence            367999999999995 899999999999999877643321                 47899999999999999999999


Q ss_pred             EECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee----EEeecCCCCeE
Q 001311          426 AYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ----YIFEGHEAPVY  501 (1102)
Q Consensus       426 ~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~----~~~~~h~~~v~  501 (1102)
                      |+.|++|+|||+.++... ....+.+|...|.+++|+|+++  .|++|+.|++|++|++......    ....+|...|.
T Consensus        69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence            999999999999987643 3345678999999999999999  7999999999999998776532    34567899999


Q ss_pred             EEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec-cccCceeEEEEcCCCCEEEEE
Q 001311          502 SVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG-FRKRSLGVVQFDTTKNRFLAA  580 (1102)
Q Consensus       502 ~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~  580 (1102)
                      +++|+  +++.+|++|+.|++|++|+................    .-.+.+..+... .+...+.+++|+|++++|+++
T Consensus       146 ~v~~~--p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~  219 (371)
T d1k8kc_         146 SLDWH--PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG----SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV  219 (371)
T ss_dssp             EEEEC--TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB----SCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE
T ss_pred             ccccc--ccccceeccccCcEEEEEeeccCcccccccccccc----ccccceeeeeeccCccCcEEEEEeeccccccccc
Confidence            99985  56689999999999999998764432211110000    001111122221 233467888999999999999


Q ss_pred             eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          581 GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       581 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      +.|+.|++||+.+++.+..+..+..  .|.+++|+|++++|++| .|+.+++|.....
T Consensus       220 ~~d~~i~iwd~~~~~~~~~~~~~~~--~v~s~~fs~d~~~la~g-~d~~~~~~~~~~~  274 (371)
T d1k8kc_         220 SHDSTVCLADADKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSA  274 (371)
T ss_dssp             ETTTEEEEEEGGGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETT
T ss_pred             ccCCcceEEeeecccceeeeecccc--cceeeeecCCCCEEEEE-cCCceEEEEeeCC
Confidence            9999999999999999998886644  79999999999888765 4788777766544

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-31  Score=292.67  Aligned_cols=325  Identities=19%  Similarity=0.263  Sum_probs=244.7

Q ss_pred             eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEE
Q 001311          445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  524 (1102)
Q Consensus       445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~  524 (1102)
                      ....|+||.+.|.+ +++++|+  +|+||+.||+|+|||+.++++++++.+|.+.|.+++|+  +  .+|++++.|+.++
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~--~--~~l~s~s~D~~~~   80 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--D--NIIISGSTDRTLK   80 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--T--TEEEEEETTSCEE
T ss_pred             cCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeC--C--Cccccceeccccc
Confidence            33468999999865 3666788  79999999999999999999999999999999999985  3  4899999999999


Q ss_pred             EEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC
Q 001311          525 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  604 (1102)
Q Consensus       525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  604 (1102)
                      +|+................+.....                       ....+..+..|+.+.+|+..+++....+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  137 (342)
T d2ovrb2          81 VWNAETGECIHTLYGHTSTVRCMHL-----------------------HEKRVVSGSRDATLRVWDIETGQCLHVLMGHV  137 (342)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEE-----------------------ETTEEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred             ccccccccceecccccceeEeeeec-----------------------ccccccccccceeEEEeecccccceeeeeccc
Confidence            9998875544433333322222221                       22457888899999999999988777765432


Q ss_pred             CCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccc
Q 001311          605 GLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAA  684 (1102)
Q Consensus       605 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  684 (1102)
                          .....+......+++++.|+.|++||.... ..+..+.+                                     
T Consensus       138 ----~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~-~~~~~~~~-------------------------------------  175 (342)
T d2ovrb2         138 ----AAVRCVQYDGRRVVSGAYDFMVKVWDPETE-TCLHTLQG-------------------------------------  175 (342)
T ss_dssp             ----SCEEEEEECSSCEEEEETTSCEEEEEGGGT-EEEEEECC-------------------------------------
T ss_pred             ----ccceeeccccceeeeecCCCeEEEeecccc-eeeEEEcC-------------------------------------
Confidence                233455566777888888889988886544 11111100                                     


Q ss_pred             cccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEE
Q 001311          685 SMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHL  764 (1102)
Q Consensus       685 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~  764 (1102)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (342)
T d2ovrb2         176 --------------------------------------------------------------------------------  175 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeee
Q 001311          765 LWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATF  843 (1102)
Q Consensus       765 iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~  843 (1102)
                                                              |..  ....+++++.++++++ ||.|++||+..++.+..+
T Consensus       176 ----------------------------------------~~~--~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~  213 (342)
T d2ovrb2         176 ----------------------------------------HTN--RVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTL  213 (342)
T ss_dssp             ----------------------------------------CSS--CEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ----------------------------------------ccc--ccccccCCCCEEEEEeCCCeEEEeecccceeeeEe
Confidence                                                    222  2334456788899988 999999999999999999


Q ss_pred             cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc---ccccceeEEEecCCCEEEEEcCCCcEEEEEcC
Q 001311          844 MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG---HSKRITGLAFSHALNVLVSSGADSQLCVWSSD  920 (1102)
Q Consensus       844 ~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~---h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~  920 (1102)
                      .+|...+.++++++   ++|++|+.||.|++||+...+....+.+   |...+.++.+  +++++++++.||+|++||++
T Consensus       214 ~~~~~~v~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~  288 (342)
T d2ovrb2         214 TGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQF--NKNFVITSSDDGTVKLWDLK  288 (342)
T ss_dssp             CCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEE--CSSEEEEEETTSEEEEEETT
T ss_pred             cccccceeEEecCC---CEEEEEcCCCEEEEEecccccccccccccceeeeceeeccc--CCCeeEEEcCCCEEEEEECC
Confidence            99999999988875   5999999999999999998877777655   4455555555  56799999999999999998


Q ss_pred             CCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEE
Q 001311          921 GWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYA 1000 (1102)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s 1000 (1102)
                      +++.....                                              ......+|...|++++|+|++.+|++
T Consensus       289 tg~~i~~~----------------------------------------------~~~~~~~~~~~v~~v~~s~~~~~la~  322 (342)
T d2ovrb2         289 TGEFIRNL----------------------------------------------VTLESGGSGGVVWRIRASNTKLVCAV  322 (342)
T ss_dssp             TCCEEEEE----------------------------------------------EECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred             CCCEEEEE----------------------------------------------ecccCCCCCCCEEEEEECCCCCEEEE
Confidence            86531110                                              01111256788999999999999999


Q ss_pred             EeCCCe----EEEEEcCC
Q 001311         1001 CFLDAT----VCVFSAAN 1014 (1102)
Q Consensus      1001 ~s~Dg~----I~vwd~~~ 1014 (1102)
                      |+.||+    |++||++.
T Consensus       323 g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         323 GSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ECSSSSSCCEEEEEECCC
T ss_pred             EeCCCCCeeEEEEEeCCC
Confidence            998885    99999864

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-31  Score=288.91  Aligned_cols=294  Identities=15%  Similarity=0.145  Sum_probs=226.5

Q ss_pred             cceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhh
Q 001311          594 VQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAA  673 (1102)
Q Consensus       594 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  673 (1102)
                      |+..+.+.+|.  ..|++++|+|++++|++|+.||+|++||+.++ +..+.+.                           
T Consensus         2 g~~~~~~~GH~--~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~-~~~~~~~---------------------------   51 (299)
T d1nr0a2           2 GSIDQVRYGHN--KAITALSSSADGKTLFSADAEGHINSWDISTG-ISNRVFP---------------------------   51 (299)
T ss_dssp             TEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-CEEECSS---------------------------
T ss_pred             CccceEcCCCC--CCcEEEEECCCCCEEEEEcCCCeEEEEECCCC-cEEEEEc---------------------------
Confidence            45667777664  48999999999999999999999999999877 3222221                           


Q ss_pred             hhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCce
Q 001311          674 ATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNA  753 (1102)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  753 (1102)
                                                                                    ..|...|.+++|+|+++ 
T Consensus        52 --------------------------------------------------------------~~h~~~v~~v~~~~~g~-   68 (299)
T d1nr0a2          52 --------------------------------------------------------------DVHATMITGIKTTSKGD-   68 (299)
T ss_dssp             --------------------------------------------------------------CSCSSCEEEEEECTTSC-
T ss_pred             --------------------------------------------------------------CCCCCcEEEEEeeccce-
Confidence                                                                          12677899999999997 


Q ss_pred             EEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEE
Q 001311          754 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFN  833 (1102)
Q Consensus       754 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd  833 (1102)
                      +++++.|+.+++|+........                 ...     ....+...+.++++++++++++++.++.+++|+
T Consensus        69 ~~~~~~d~~v~~~~~~~~~~~~-----------------~~~-----~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~  126 (299)
T d1nr0a2          69 LFTVSWDDHLKVVPAGGSGVDS-----------------SKA-----VANKLSSQPLGLAVSADGDIAVAACYKHIAIYS  126 (299)
T ss_dssp             EEEEETTTEEEEECSSSSSSCT-----------------TSC-----CEEECSSCEEEEEECTTSSCEEEEESSEEEEEE
T ss_pred             eecccceeeEEEeccCCccccc-----------------ccc-----ccccccccccccccccccccccccccccccccc
Confidence            6677889999999864321100                 000     001256778999999999999999999999999


Q ss_pred             cCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee-eeccccccceeEEEecCCCEEEEEcCCC
Q 001311          834 MMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS-KLKGHSKRITGLAFSHALNVLVSSGADS  912 (1102)
Q Consensus       834 ~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~-~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  912 (1102)
                      ...  .....  ....+.+++|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+
T Consensus       127 ~~~--~~~~~--~~~~~~~~~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  201 (299)
T d1nr0a2         127 HGK--LTEVP--ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSR  201 (299)
T ss_dssp             TTE--EEEEE--CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccc--ccccc--cccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            543  22222  344588999999 89999999999999999999877554 3457899999999999999999999999


Q ss_pred             cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCCeEEEEEcCCceEeeeeccCCC-CCCeeEEE
Q 001311          913 QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HETQLAIFETTKLECVKQWVPRES-SAPITHAT  990 (1102)
Q Consensus       913 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~  990 (1102)
                      .|++||+.++....  ......+|.   ..|.+++|+|++++|+++ .|+.|++||+.++..........| ...|.++.
T Consensus       202 ~i~~~~~~~~~~~~--~~~~~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  276 (299)
T d1nr0a2         202 KVIPYSVANNFELA--HTNSWTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI  276 (299)
T ss_dssp             CEEEEEGGGTTEES--CCCCCCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE
T ss_pred             cccccccccccccc--ccccccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE
Confidence            99999998754321  222333443   489999999999999995 889999999998765444433344 45666665


Q ss_pred             EcCCCcEEEEEeCCCeEEEEEcC
Q 001311          991 FSCDSQLVYACFLDATVCVFSAA 1013 (1102)
Q Consensus       991 ~spd~~~l~s~s~Dg~I~vwd~~ 1013 (1102)
                       ++++++|++++.||+|++||+.
T Consensus       277 -~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         277 -WLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -EEETTEEEEEETTSCEEEEECC
T ss_pred             -ECCCCEEEEEeCCCEEEEEecc
Confidence             4677899999999999999984

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.1e-30  Score=284.07  Aligned_cols=281  Identities=15%  Similarity=0.210  Sum_probs=208.4

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee-cCCCCeEEEeeeecCCccEEEEEeCCCeEEEE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIFSTALDGKIKAW  526 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~w  526 (1102)
                      .+.||.++|++|+|+||++  +|+||+.||+|++||+.++++++.+. +|...|.+++|++  ++. +++++.|+.+++|
T Consensus         7 ~~~GH~~~V~~l~~s~dg~--~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~--~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           7 VRYGHNKAITALSSSADGK--TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTS--KGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECT--TSC-EEEEETTTEEEEE
T ss_pred             EcCCCCCCcEEEEECCCCC--EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeec--cce-eecccceeeEEEe
Confidence            5889999999999999999  89999999999999999999998884 6999999999854  444 6677789999999


Q ss_pred             EcCCCCCee---eecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC
Q 001311          527 LYDNLGSRV---DYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD  603 (1102)
Q Consensus       527 d~~~~~~~~---~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  603 (1102)
                      +........   ....+..                     .+..+++++++..+++ +.++.+++|+...  ....... 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~s~~g~~~~~-~~~~~i~~~~~~~--~~~~~~~-  136 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSS---------------------QPLGLAVSADGDIAVA-ACYKHIAIYSHGK--LTEVPIS-  136 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSS---------------------CEEEEEECTTSSCEEE-EESSEEEEEETTE--EEEEECS-
T ss_pred             ccCCccccccccccccccc---------------------cccccccccccccccc-ccccccccccccc--ccccccc-
Confidence            986533211   1112222                     3344555555554544 4567899999543  2222221 


Q ss_pred             CCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311          604 GGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  683 (1102)
Q Consensus       604 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1102)
                         ..+.+++|+|++++|++++.||.|++||+.++. .....                                      
T Consensus       137 ---~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~-~~~~~--------------------------------------  174 (299)
T d1nr0a2         137 ---YNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-VSEVK--------------------------------------  174 (299)
T ss_dssp             ---SCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-EEEEE--------------------------------------
T ss_pred             ---ccccccccccccccccccccccccccccccccc-ccccc--------------------------------------
Confidence               246789999999999999999999999976541 10000                                      


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311          684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  763 (1102)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i  763 (1102)
                                                                                                      
T Consensus       175 --------------------------------------------------------------------------------  174 (299)
T d1nr0a2         175 --------------------------------------------------------------------------------  174 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCcee--
Q 001311          764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTM--  840 (1102)
Q Consensus       764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~--  840 (1102)
                       .                                     ..|...|.+++|+|++++|++++ |+.|++||+.++...  
T Consensus       175 -~-------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~  216 (299)
T d1nr0a2         175 -T-------------------------------------IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  216 (299)
T ss_dssp             -E-------------------------------------EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             -c-------------------------------------ccccccccccccccccccccccccccccccccccccccccc
Confidence             0                                     00556677778888888888777 788888887766544  


Q ss_pred             -eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceee--eeeccc-cccceeEEEecCCCEEEEEcCCCcEEE
Q 001311          841 -ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVK--SKLKGH-SKRITGLAFSHALNVLVSSGADSQLCV  916 (1102)
Q Consensus       841 -~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~--~~l~~h-~~~V~~l~~s~d~~~l~s~s~Dg~i~v  916 (1102)
                       ..+.+|...|++++|+| ++++|++|+.||.|++||+.++...  .....| ...|.+++| +++++|++++.|++|++
T Consensus       217 ~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~i  294 (299)
T d1nr0a2         217 TNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKF  294 (299)
T ss_dssp             CCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEE
T ss_pred             cccccccccccccccccc-cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEE
Confidence             34667889999999999 9999999999999999999876433  223334 445666654 56789999999999999


Q ss_pred             EEcC
Q 001311          917 WSSD  920 (1102)
Q Consensus       917 wd~~  920 (1102)
                      ||+.
T Consensus       295 Wdl~  298 (299)
T d1nr0a2         295 WNVP  298 (299)
T ss_dssp             EECC
T ss_pred             Eecc
Confidence            9984

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.4e-29  Score=274.27  Aligned_cols=257  Identities=15%  Similarity=0.204  Sum_probs=193.2

Q ss_pred             CCeeEEEEecCCCeEEEEEec-CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCC-CCCeEEEEEcc--CCCe
Q 001311          347 SSPMSMDFHPVQQTLLLVGTN-VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP-GVSVNRVIWSP--DGSL  422 (1102)
Q Consensus       347 ~~v~~v~~spdg~~llasg~~-d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~sp--dg~~  422 (1102)
                      ..+++++|+|+|+. ++.++. +..|+.||....+...                 ...+.+| ...|++++|+|  +|++
T Consensus        18 ~~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~   79 (325)
T d1pgua1          18 NFTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQY   79 (325)
T ss_dssp             TCCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCE
T ss_pred             CCeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCCE
Confidence            45689999999997 555543 3346667654332211                 0125566 56899999998  6789


Q ss_pred             EEEEECCCeEEEEEccCCceeee-----EEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQ-----HLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE  497 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~-----~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~  497 (1102)
                      ||+|+.||+|+|||+..++....     ...+..|.++|.+++|+++++.+..++++.++.+++|++.+++++..+.+|.
T Consensus        80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  159 (325)
T d1pgua1          80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS  159 (325)
T ss_dssp             EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred             EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence            99999999999999987654322     2235678899999999999995333444568899999999999999999999


Q ss_pred             CCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeec---CCCCeeeEEEEccCCceeeeccccCceeEEEEcCC-
Q 001311          498 APVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYE---APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT-  573 (1102)
Q Consensus       498 ~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~-  573 (1102)
                      ..|.+++|++..+ .++++++.|+.|++||....+......   .+...|.                     +++|+|+ 
T Consensus       160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~---------------------~v~~~pd~  217 (325)
T d1pgua1         160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVR---------------------DVEFSPDS  217 (325)
T ss_dssp             SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEE---------------------EEEECSTT
T ss_pred             ccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccE---------------------Eeeecccc
Confidence            9999999965433 468899999999999987654443332   2233344                     4555553 


Q ss_pred             CCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc---CCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311          574 KNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN---KDGCLLAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       574 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                      +.++++++.|+.|++||+++++.+..+..+..  .+.++.|+   +++++|++++.|+.|+|||+.++ +.++.+.
T Consensus       218 ~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~--~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~-~~~~~~~  290 (325)
T d1pgua1         218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQE--PVQGGIFALSWLDSQKFATVGADATIRVWDVTTS-KCVQKWT  290 (325)
T ss_dssp             CCEEEEEETTCCEEEEETTTCCEEEECCBTTB--CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred             ceeccccccccceeeeeecccccccccccccc--ccccceeeeeccCCCEEEEEeCCCeEEEEECCCC-CEEEEEE
Confidence            36789999999999999999999999886644  56666665   78999999999999999999887 5555443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.8e-29  Score=277.41  Aligned_cols=287  Identities=14%  Similarity=0.150  Sum_probs=217.8

Q ss_pred             cceEEEEEccCCceEEEeecCc-eEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC-CCCeeEEEEec-
Q 001311          740 TKISRLIFTNSGNAILALASNA-IHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP-EEAVPCFALSK-  816 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~i~~l~~s~-  816 (1102)
                      ..+.+++|+|+++.++.++.+. .++.|+......                    ... ..+.  +| ...|++++|+| 
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------------~~~-~~~~--gh~~~~v~~v~fsP~   74 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------------PPV-VQFT--GHGSSVVTTVKFSPI   74 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------------CSE-EEEC--TTTTSCEEEEEECSS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------------cce-EEEe--CCCCCCEEEEEEeeC
Confidence            4567889999999988876553 355565311100                    000 0111  24 56799999997 


Q ss_pred             -CCCeEEEEe-CCeEEEEEcCCCcee--------eeecCCCCCeeEEEEecCCCcEEEEEeC--CCcEEEEEeecceeee
Q 001311          817 -NDSYVMSAS-GGKISLFNMMTFKTM--------ATFMPPPPAATFLAFHPQDNNIIAIGMD--DSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       817 -d~~~las~s-dg~I~iwd~~~~~~~--------~~~~~~~~~i~~l~~sp~d~~~lasg~~--dg~v~vwd~~~~~~~~  884 (1102)
                       ++++|++|+ ||+|+|||+..++..        ..+..|.+.|.+++|++ ++++|++++.  ++.+++|+..+++++.
T Consensus        75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~  153 (325)
T d1pgua1          75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG  153 (325)
T ss_dssp             TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred             CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence             678999999 999999998765433        23456888999999999 8888887764  6789999999999999


Q ss_pred             eeccccccceeEEEecCCCE-EEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC-CcEEEE-EeCC
Q 001311          885 KLKGHSKRITGLAFSHALNV-LVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD-QIHFLV-VHET  961 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d~~~-l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~-~~d~  961 (1102)
                      .+.+|...|++++|+|++.+ +++++.|+.|++||+...+...  ......++   ...|.+++|+|+ +.++++ +.|+
T Consensus       154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~---~~~v~~v~~~pd~~~~l~s~~~d~  228 (325)
T d1pgua1         154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQ---GSFVRDVEFSPDSGEFVITVGSDR  228 (325)
T ss_dssp             ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCT---TCCEEEEEECSTTCCEEEEEETTC
T ss_pred             eeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCC---CCccEEeeeccccceecccccccc
Confidence            99999999999999999865 7789999999999998754322  22222333   347899999997 678887 4899


Q ss_pred             eEEEEEcCCceEeeeeccCCCCCCeeEEEEc---CCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccc
Q 001311          962 QLAIFETTKLECVKQWVPRESSAPITHATFS---CDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1038 (1102)
Q Consensus       962 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~s---pd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 1038 (1102)
                      .|++||+.+++.+..+.  +|...+.++.|+   |||++|++++.|++|+|||+.+++.+..+....     | ...+..
T Consensus       229 ~i~iwd~~~~~~~~~l~--~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~-----~-~~~~~~  300 (325)
T d1pgua1         229 KISCFDGKSGEFLKYIE--DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDK-----Q-QLGNQQ  300 (325)
T ss_dssp             CEEEEETTTCCEEEECC--BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCT-----T-CGGGCE
T ss_pred             ceeeeeecccccccccc--ccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecC-----C-cccCeE
Confidence            99999999999998876  566666666655   789999999999999999999999998876221     1 111333


Q ss_pred             eEEEecCCCCCEEEEEecCCcEEEEec
Q 001311         1039 LVIAAHPQEPNEFALGLSDGGVHVFEP 1065 (1102)
Q Consensus      1039 ~~v~f~p~d~~~l~s~~~Dg~v~vW~~ 1065 (1102)
                      +++.+.+  +.+|++++.||.|++||+
T Consensus       301 ~~~~~~~--~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         301 VGVVATG--NGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             EEEEECC--CCEEEEEECCCEEEEEEC
Confidence            3455544  468999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.1e-27  Score=264.43  Aligned_cols=327  Identities=13%  Similarity=0.091  Sum_probs=230.7

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      +..+|.+.|++|+||||+++||+|+.||+|+|||+.++..........+|.++|.+++|++++.. +|++|+.|+.|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence            57899999999999999999999999999999999887665554455679999999999998665 79999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      ++..+........+...+....+.. .+...+++++.|+.+++||++..........+..               .....
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~---------------~~~~~  148 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN---------------SNNTK  148 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESC---------------SSSSS
T ss_pred             ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccc---------------ccccc
Confidence            9999888877766655554444332 3346899999999999999876443322111000               00011


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEc-CCCCCCCcCeEEEcC-CCCEEEEEECCCcEEEEEccCCcc
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSID-ADGGLPASPRIRFNK-DGCLLAVSTNDNGIKILATSDGIR  640 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~  640 (1102)
                      .......+.+.++.+++++.|+.|++||+.......... .......+.+..+.+ ++..+++++.||.+.+|+......
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~  228 (342)
T d1yfqa_         149 VKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             SCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             ceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcc
Confidence            123345556667789999999999999998766432221 111122344555544 788999999999999998754411


Q ss_pred             ceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecc
Q 001311          641 LLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLT  720 (1102)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~  720 (1102)
                      .......                                                                     +.  
T Consensus       229 ~~~~~~~---------------------------------------------------------------------~~--  237 (342)
T d1yfqa_         229 DYNSSKR---------------------------------------------------------------------FA--  237 (342)
T ss_dssp             STTCTTC---------------------------------------------------------------------EE--
T ss_pred             eeecccc---------------------------------------------------------------------ce--
Confidence            1000000                                                                     00  


Q ss_pred             cCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCcccccccc
Q 001311          721 ELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDV  800 (1102)
Q Consensus       721 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~  800 (1102)
                                                                ...+..                              ..
T Consensus       238 ------------------------------------------~~~~~~------------------------------~~  245 (342)
T d1yfqa_         238 ------------------------------------------FRCHRL------------------------------NL  245 (342)
T ss_dssp             ------------------------------------------EECCCC------------------------------CT
T ss_pred             ------------------------------------------eeeeee------------------------------cc
Confidence                                                      000000                              00


Q ss_pred             CCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          801 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       801 ~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      ...+|...+.+++|+|++++||+|+ ||.|++||+.+++.+.++..+ ..+..++|+| ++++|++|+.|+.+++|... 
T Consensus       246 ~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~~~-  322 (342)
T d1yfqa_         246 KDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNAAI-  322 (342)
T ss_dssp             TCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCSSS-
T ss_pred             CCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEeeee-
Confidence            0112677899999999999999999 999999999999998888643 3466788888 88999999999988887542 


Q ss_pred             ceeeeeecccccccee
Q 001311          880 DEVKSKLKGHSKRITG  895 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~  895 (1102)
                         ...+..|...|..
T Consensus       323 ---~~~~~~~~~~i~~  335 (342)
T d1yfqa_         323 ---DQTIELNASSIYI  335 (342)
T ss_dssp             ---CTTSCCCCCEEEE
T ss_pred             ---CCCccCCCCeEEE
Confidence               2345556666654

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.3e-27  Score=257.75  Aligned_cols=269  Identities=18%  Similarity=0.255  Sum_probs=207.2

Q ss_pred             eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEE
Q 001311          445 QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  524 (1102)
Q Consensus       445 ~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~  524 (1102)
                      .+.++.||.++|++++|+|      |+||+.||+|++||+.++.     .+|...|.++.+..  + ..+++++.|++|+
T Consensus         5 ~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~-----~~h~~~V~~~~~~~--~-~~~~s~s~D~~v~   70 (287)
T d1pgua2           5 VLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSK--A-QEYSSISWDDTLK   70 (287)
T ss_dssp             EEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEEE-----CCCCSCEEEEECCS--T-TCCEEEETTTEEE
T ss_pred             eeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCCC-----CCCCCCEEEEEecC--C-CeEEEEeeccccc
Confidence            4457999999999999975      7999999999999987643     57999999998743  2 5689999999999


Q ss_pred             EEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC
Q 001311          525 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG  604 (1102)
Q Consensus       525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  604 (1102)
                      +|++....       ....+.                     .+.+++++. ++..+.++.+.+|+..+++.+..+....
T Consensus        71 ~w~~~~~~-------~~~~~~---------------------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (287)
T d1pgua2          71 VNGITKHE-------FGSQPK---------------------VASANNDGF-TAVLTNDDDLLILQSFTGDIIKSVRLNS  121 (287)
T ss_dssp             ETTEEEEE-------CSSCEE---------------------EEEECSSSE-EEEEETTSEEEEEETTTCCEEEEEECSS
T ss_pred             cccccccc-------ccccee---------------------eeeeccCCc-eEEEeecccceeeeccceeeeeeccccc
Confidence            99875421       112233                     334444443 4445567789999999999888876442


Q ss_pred             CCCCcCeEEEcCCCCEEEEEECCC-cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhcccccccc
Q 001311          605 GLPASPRIRFNKDGCLLAVSTNDN-GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRA  683 (1102)
Q Consensus       605 ~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  683 (1102)
                           ...++++++..+++++.++ .+++|++.... ....+                                      
T Consensus       122 -----~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~-~~~~~--------------------------------------  157 (287)
T d1pgua2         122 -----PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE-VSFDL--------------------------------------  157 (287)
T ss_dssp             -----CEEEEEECSSEEEEEETTTSCEEEEETTEEE-EEEEC--------------------------------------
T ss_pred             -----eeeeeeccCcceeeeccccceeeeeeccccc-eeeee--------------------------------------
Confidence                 3467788888888888775 68999864331 00000                                      


Q ss_pred             ccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceE
Q 001311          684 ASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIH  763 (1102)
Q Consensus       684 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i  763 (1102)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (287)
T d1pgua2         158 --------------------------------------------------------------------------------  157 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceee-
Q 001311          764 LLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA-  841 (1102)
Q Consensus       764 ~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~-  841 (1102)
                                                          .  ..+...+++++|+|++++|++++ ||.|++||+.+++... 
T Consensus       158 ------------------------------------~--~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~  199 (287)
T d1pgua2         158 ------------------------------------K--TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS  199 (287)
T ss_dssp             ------------------------------------S--SCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC
T ss_pred             ------------------------------------e--eccCCceeEEEeccCccccccccccccccceeecccccccc
Confidence                                                0  01456688888889988898888 8899999998877654 


Q ss_pred             eecCCCCCeeEEEEecC---------CCcEEEEEeCCCcEEEEEeec-ceeeeeeccccccceeEEEecCCCEEEEEcCC
Q 001311          842 TFMPPPPAATFLAFHPQ---------DNNIIAIGMDDSSIQIYNVRV-DEVKSKLKGHSKRITGLAFSHALNVLVSSGAD  911 (1102)
Q Consensus       842 ~~~~~~~~i~~l~~sp~---------d~~~lasg~~dg~v~vwd~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~D  911 (1102)
                      .+.+|...|.+++|+|.         ++.+|++|+.|+.|+|||+.+ .+.+..+.+|.+.|++++|++++ .|++++.|
T Consensus       200 ~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D  278 (287)
T d1pgua2         200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGAD  278 (287)
T ss_dssp             CSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETT
T ss_pred             cccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECC
Confidence            46789999999999872         356899999999999999976 56778889999999999999986 68999999


Q ss_pred             CcEEEEEc
Q 001311          912 SQLCVWSS  919 (1102)
Q Consensus       912 g~i~vwd~  919 (1102)
                      ++|++|++
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.5e-27  Score=265.20  Aligned_cols=293  Identities=16%  Similarity=0.224  Sum_probs=194.6

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee------eEEeecCCCCeEEEeee---e--cCCccEEEE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK------QYIFEGHEAPVYSVCPH---H--KENIQFIFS  516 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~------~~~~~~h~~~v~~v~~~---~--~~~~~~l~s  516 (1102)
                      ..++|.+.|.++++++  +  +++|++.|++|+|||..+...      ......|...+..+...   .  ..++.++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~--~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s   84 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--S--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   84 (393)
T ss_dssp             ESSCSSSCEEEEEECS--S--EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--C--EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEE
Confidence            4679999999999864  4  699999999999999776532      22333455544333211   1  123357889


Q ss_pred             EeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCC-----CCEEEEEeCCCeEEEEEC
Q 001311          517 TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTT-----KNRFLAAGDDFSIKFWDM  591 (1102)
Q Consensus       517 ~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~iwd~  591 (1102)
                      ++.||.|++|++........+..+.       ..    ..........+..+++.++     +.++++++.||.+++|++
T Consensus        85 ~~~dg~v~~w~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~  153 (393)
T d1sq9a_          85 TSFSGDLLFYRITREDETKKVIFEK-------LD----LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF  153 (393)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEE-------EC----CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred             EeCCCcEEEEEccCCCceeeeeccc-------cc----eeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEe
Confidence            9999999999987644332211100       00    0000011223344444433     357899999999999997


Q ss_pred             CCcc---------------eEEEE-cCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccccc
Q 001311          592 DSVQ---------------LLTSI-DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  655 (1102)
Q Consensus       592 ~~~~---------------~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  655 (1102)
                      ....               ..... ........+.+++|+|++ +|++|+.||+|++||+.++ +.+..++....     
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~-~~~~~~~~~~~-----  226 (393)
T d1sq9a_         154 HPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTL-RPLYNFESQHS-----  226 (393)
T ss_dssp             ESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTT-EEEEEEECCC------
T ss_pred             ecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccc-ccccccccccc-----
Confidence            4321               01111 112223457899999998 8899999999999998877 33222211000     


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311          656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  735 (1102)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  735 (1102)
                                                                                                      
T Consensus       227 --------------------------------------------------------------------------------  226 (393)
T d1sq9a_         227 --------------------------------------------------------------------------------  226 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                                                                                      +  .+|...|.+++|+
T Consensus       227 ----------------------------------------------------------------l--~~h~~~V~~l~~s  240 (393)
T d1sq9a_         227 ----------------------------------------------------------------M--INNSNSIRSVKFS  240 (393)
T ss_dssp             --------------------------------------------------------------------CCCCCEEEEEEC
T ss_pred             ----------------------------------------------------------------c--ccccceEEEcccc
Confidence                                                                            0  0155555566666


Q ss_pred             cCCCeEEEEe-CC---eEEEEEcCCCceeeee-------------cCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEee
Q 001311          816 KNDSYVMSAS-GG---KISLFNMMTFKTMATF-------------MPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVR  878 (1102)
Q Consensus       816 ~d~~~las~s-dg---~I~iwd~~~~~~~~~~-------------~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~  878 (1102)
                      |||++|++|+ |+   .|++||+++++.+..+             .+|...|++++|+| ++++|++|+.|++|+|||+.
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETT
T ss_pred             cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECC
Confidence            6666666655 43   3566666665555544             47999999999999 99999999999999999999


Q ss_pred             cceeeeeeccccccce----eEEEecCCCEEEEEc
Q 001311          879 VDEVKSKLKGHSKRIT----GLAFSHALNVLVSSG  909 (1102)
Q Consensus       879 ~~~~~~~l~~h~~~V~----~l~~s~d~~~l~s~s  909 (1102)
                      +++++.++.+|.+.|.    .++|++++..+++++
T Consensus       320 ~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         320 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             CCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            9999999999998886    589999999887654

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.1e-26  Score=246.75  Aligned_cols=277  Identities=21%  Similarity=0.310  Sum_probs=208.0

Q ss_pred             eeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeE
Q 001311          444 RQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKI  523 (1102)
Q Consensus       444 ~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i  523 (1102)
                      .++....+|...|+|++|  |++  +|+||+.||+|+|||+.+++++.++.+|.+.|.+++|    ++++|++|+.|+.|
T Consensus         6 ~~i~~~~~~~~~V~c~~~--d~~--~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~----~~~~l~s~s~D~~i   77 (293)
T d1p22a2           6 QRIHCRSETSKGVYCLQY--DDQ--KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY----DERVIITGSSDSTV   77 (293)
T ss_dssp             CCEECCCSSCCCEEEEEC--CSS--EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC----CSSEEEEEETTSCE
T ss_pred             EEEeccCCCCCCEEEEEE--cCC--EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec----ccceeecccccccc
Confidence            334456678899999776  677  7999999999999999999999999999999999886    34799999999999


Q ss_pred             EEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEE-cC
Q 001311          524 KAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSI-DA  602 (1102)
Q Consensus       524 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~  602 (1102)
                      ++|++...............                       ..........++++..++.+++|+.......... ..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (293)
T d1p22a2          78 RVWDVNTGEMLNTLIHHCEA-----------------------VLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL  134 (293)
T ss_dssp             EEEESSSCCEEEEECCCCSC-----------------------EEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred             cccccccccccccccccccc-----------------------cccccccccceeecccccceeEeeccccccccccccc
Confidence            99999886655444332221                       1222333456899999999999999876543322 12


Q ss_pred             CCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccc
Q 001311          603 DGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADR  682 (1102)
Q Consensus       603 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (1102)
                      ..+...+..+.+  ....+++++.|+.|++||..++ +.+..+.+                                   
T Consensus       135 ~~~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~-~~~~~~~~-----------------------------------  176 (293)
T d1p22a2         135 VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTC-EFVRTLNG-----------------------------------  176 (293)
T ss_dssp             CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTC-CEEEEEEC-----------------------------------
T ss_pred             ccccccccccee--cccccccccCCCceeeecCCCC-cEEEEEcc-----------------------------------
Confidence            223334544444  4567888888999999987665 22211110                                   


Q ss_pred             cccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCce
Q 001311          683 AASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAI  762 (1102)
Q Consensus       683 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~  762 (1102)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (293)
T d1p22a2         177 --------------------------------------------------------------------------------  176 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceee
Q 001311          763 HLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMA  841 (1102)
Q Consensus       763 i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~  841 (1102)
                                                                +...+..+.+  ++.++++++ |+.|++||+.+...+.
T Consensus       177 ------------------------------------------~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  212 (293)
T d1p22a2         177 ------------------------------------------HKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR  212 (293)
T ss_dssp             ------------------------------------------CSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ------------------------------------------cccccccccC--CCCeEEEecCCCEEEEEecccceeee
Confidence                                                      2223333433  455777777 8999999999999999


Q ss_pred             eecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc---------eeeeeeccccccceeEEEecCCCEEEEEcCCC
Q 001311          842 TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD---------EVKSKLKGHSKRITGLAFSHALNVLVSSGADS  912 (1102)
Q Consensus       842 ~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~---------~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg  912 (1102)
                      .+.+|...+..  +++ ++.+|++|+.||.|++||+.+.         .++..+.+|.+.|++++|  |+++|+|++.||
T Consensus       213 ~~~~~~~~v~~--~~~-~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg  287 (293)
T d1p22a2         213 VLEGHEELVRC--IRF-DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDD  287 (293)
T ss_dssp             EECCCSSCEEE--EEC-CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSS
T ss_pred             eecccceeeee--ccc-cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCC
Confidence            99888887765  455 6789999999999999998653         356788999999999999  567899999999


Q ss_pred             cEEEEE
Q 001311          913 QLCVWS  918 (1102)
Q Consensus       913 ~i~vwd  918 (1102)
                      +|+|||
T Consensus       288 ~i~iWD  293 (293)
T d1p22a2         288 TILIWD  293 (293)
T ss_dssp             EEEEEC
T ss_pred             EEEEeC
Confidence            999997

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.3e-27  Score=252.22  Aligned_cols=276  Identities=10%  Similarity=0.066  Sum_probs=206.4

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      ++.||..+|++++|+|    |++|+.||+|++||+.++        ..+|...|.+++|++++.   +++++.|++|++|
T Consensus         8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~---~~s~s~D~~v~~w   72 (287)
T d1pgua2           8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE---YSSISWDDTLKVN   72 (287)
T ss_dssp             EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC---CEEEETTTEEEET
T ss_pred             EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCCe---EEEEeeccccccc
Confidence            5899999999999997    999999999999998763        357999999999997765   7999999999999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      ++...+       ....+..+++  .+++..++ .+.++.+.+|+..+......+....                     
T Consensus        73 ~~~~~~-------~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  121 (287)
T d1pgua2          73 GITKHE-------FGSQPKVASA--NNDGFTAV-LTNDDDLLILQSFTGDIIKSVRLNS---------------------  121 (287)
T ss_dssp             TEEEEE-------CSSCEEEEEE--CSSSEEEE-EETTSEEEEEETTTCCEEEEEECSS---------------------
T ss_pred             cccccc-------cccceeeeee--ccCCceEE-Eeecccceeeeccceeeeeeccccc---------------------
Confidence            965432       2334555665  34444444 4556778889887766554433221                     


Q ss_pred             CceeEEEEcCCCCEEEEEeCC-CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccc
Q 001311          563 RSLGVVQFDTTKNRFLAAGDD-FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRL  641 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~  641 (1102)
                         ...+++++++.+++++.+ +.|++|++...+....+.. .+...+.+++|+|++.+|++++.||.|++||+.++...
T Consensus       122 ---~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~  197 (287)
T d1pgua2         122 ---PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK  197 (287)
T ss_dssp             ---CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ---eeeeeeccCcceeeeccccceeeeeeccccceeeeeee-ccCCceeEEEeccCccccccccccccccceeecccccc
Confidence               122344455667777765 5799999987666555543 23346899999999999999999999999998766221


Q ss_pred             eeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEeccc
Q 001311          642 LRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTE  721 (1102)
Q Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~  721 (1102)
                      ...+                                                                            
T Consensus       198 ~~~~----------------------------------------------------------------------------  201 (287)
T d1pgua2         198 TSRW----------------------------------------------------------------------------  201 (287)
T ss_dssp             ECCS----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            1111                                                                            


Q ss_pred             CCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccC
Q 001311          722 LSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVT  801 (1102)
Q Consensus       722 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~  801 (1102)
                                    ..|...|.+++|+|++...                                               
T Consensus       202 --------------~~h~~~v~~~~~~p~~~~~-----------------------------------------------  220 (287)
T d1pgua2         202 --------------AFRTSKINAISWKPAEKGA-----------------------------------------------  220 (287)
T ss_dssp             --------------CCCSSCEEEEEECCCC--------------------------------------------------
T ss_pred             --------------cccccccceeeeccccccc-----------------------------------------------
Confidence                          1267788999998877522                                               


Q ss_pred             CCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCC-CceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          802 DSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMT-FKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       802 ~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~-~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                                ..+..++.++++|+ |++|++||+++ .+.+..+.+|...|++++|+| ++ .|++++.||.|++|++
T Consensus       221 ----------~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~-~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         221 ----------NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             -------------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TT-EEEEEETTSCEEEEEE
T ss_pred             ----------ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECC-CC-EEEEEECCCeEEEEEE
Confidence                      22345778999999 99999999976 556777889999999999999 65 5888999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=5.7e-27  Score=265.08  Aligned_cols=348  Identities=10%  Similarity=0.080  Sum_probs=230.9

Q ss_pred             ccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCCcee---eeEEEeeccccCEEEEE------EcCCCCeeEEEEe
Q 001311          403 LVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEV---RQHLEIDAHVGGVNDIA------FSHPNKQLCVITC  473 (1102)
Q Consensus       403 ~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~~~~---~~~~~l~~h~~~V~~v~------~s~d~~~~~l~s~  473 (1102)
                      ...+|.+.|.++++++  ++|++|+.|++|+|||..+.+..   ........|...+..+.      ++.... .+++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~   85 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFEL-CLVATT   85 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEE-EEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCC-cEEEEE
Confidence            5789999999999864  79999999999999998765421   11112334544433332      222222 267899


Q ss_pred             cCCCcEEEEeCCCCeeeEE-----e-----ecCCCCeEEEeeeecC---CccEEEEEeCCCeEEEEEcCCCCCee-eecC
Q 001311          474 GDDKTIKVWDATNGAKQYI-----F-----EGHEAPVYSVCPHHKE---NIQFIFSTALDGKIKAWLYDNLGSRV-DYEA  539 (1102)
Q Consensus       474 ~~d~~i~vWd~~~~~~~~~-----~-----~~h~~~v~~v~~~~~~---~~~~l~s~s~dg~i~~wd~~~~~~~~-~~~~  539 (1102)
                      +.||.|++|++........     .     ..+...+..++|....   .+.++++++.||.+++|++....... ....
T Consensus        86 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~  165 (393)
T d1sq9a_          86 SFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTL  165 (393)
T ss_dssp             ETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTT
T ss_pred             eCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeee
Confidence            9999999999765432211     1     1244557777775543   24689999999999999986543221 1111


Q ss_pred             CCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCC----CCCCCcCeEEEc
Q 001311          540 PGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDAD----GGLPASPRIRFN  615 (1102)
Q Consensus       540 ~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~~v~~~~~s  615 (1102)
                      .......+....    .........+.+++|+|++ +|++|+.|++|++||+.+++.+..+...    ++...|.+++|+
T Consensus       166 ~~~~~~~~~~~~----~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s  240 (393)
T d1sq9a_         166 NWSPTLELQGTV----ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  240 (393)
T ss_dssp             CCCCEEEEEEEE----CCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             eeccceecccce----ecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccc
Confidence            111111111100    0111223356778888886 7899999999999999999988776532    345689999999


Q ss_pred             CCCCEEEEEECCCc---EEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCC
Q 001311          616 KDGCLLAVSTNDNG---IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGM  692 (1102)
Q Consensus       616 ~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1102)
                      |+|++|++|+.|++   |++||+.++ ..+..+......                                         
T Consensus       241 pdg~~l~sgs~D~t~~~i~lwd~~~g-~~~~~l~~~~~~-----------------------------------------  278 (393)
T d1sq9a_         241 PQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTHS-----------------------------------------  278 (393)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC--------------------------------------------
T ss_pred             cccceeeeecCCCCcceeeecccccc-eeeeeecccccc-----------------------------------------
Confidence            99999999999875   899998877 333332210000                                         


Q ss_pred             CCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccc
Q 001311          693 NGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTE  772 (1102)
Q Consensus       693 ~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  772 (1102)
                                                                                .                     
T Consensus       279 ----------------------------------------------------------~---------------------  279 (393)
T d1sq9a_         279 ----------------------------------------------------------S---------------------  279 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------c---------------------
Confidence                                                                      0                     


Q ss_pred             cCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCee
Q 001311          773 RNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAAT  851 (1102)
Q Consensus       773 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~  851 (1102)
                                            .....+  .+|...|++++|+||+++|++++ |++|++||+++++++.++.+|...|.
T Consensus       280 ----------------------~~~~~~--~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~  335 (393)
T d1sq9a_         280 ----------------------QASLGE--FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIE  335 (393)
T ss_dssp             --------------------------CC--BSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCS
T ss_pred             ----------------------cceeee--ecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCccc
Confidence                                  000001  13889999999999999999999 99999999999999999999988775


Q ss_pred             ----EEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          852 ----FLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       852 ----~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                          .++|++ ++..+++++   ...++.+..+..        ...    .....+.|++++.|+.|++|.-
T Consensus       336 ~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~--------~~~----~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         336 IEEDILAVDE-HGDSLAEPG---VFDVKFLKKGWR--------SGM----GADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             SGGGCCCBCT-TSCBCSSCC---EEEEEEECTTTS--------BST----TCTTSCEEEEEETTTEEEEEEE
T ss_pred             CCccEEEECC-CCCEEEEcc---cceEEECccCce--------ecc----ccCCCCEEEEEEcCCeEEEEeC
Confidence                588999 787776443   222222222211        100    0123467899999999999963

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.6e-26  Score=244.20  Aligned_cols=234  Identities=18%  Similarity=0.296  Sum_probs=184.9

Q ss_pred             ccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCe
Q 001311          343 LNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSL  422 (1102)
Q Consensus       343 ~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~  422 (1102)
                      .+|...|+|++  +||++ ||||+.||+|+|||+.+++.+.                   .+.+|.+.|++++|  ++++
T Consensus        12 ~~~~~~V~c~~--~d~~~-l~sgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~v~~--~~~~   67 (293)
T d1p22a2          12 SETSKGVYCLQ--YDDQK-IVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERV   67 (293)
T ss_dssp             CSSCCCEEEEE--CCSSE-EEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSE
T ss_pred             CCCCCCEEEEE--EcCCE-EEEEeCCCeEEEEECCCCcEEE-------------------EEecCCCCEeeeec--ccce
Confidence            35788999865  57885 9999999999999999998877                   47899999999887  6889


Q ss_pred             EEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCee---eEEeecCCCC
Q 001311          423 FGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAK---QYIFEGHEAP  499 (1102)
Q Consensus       423 las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~---~~~~~~h~~~  499 (1102)
                      |++|+.|+.|++|++..+.....   ...+...  ...+.+...  .++++..++.+++||..+...   ...+..|...
T Consensus        68 l~s~s~D~~i~~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (293)
T d1p22a2          68 IITGSSDSTVRVWDVNTGEMLNT---LIHHCEA--VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA  140 (293)
T ss_dssp             EEEEETTSCEEEEESSSCCEEEE---ECCCCSC--EEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC
T ss_pred             eeccccccccccccccccccccc---ccccccc--ccccccccc--ceeecccccceeEeeccccccccccccccccccc
Confidence            99999999999999999875542   2223222  233444555  589999999999999987654   4456778888


Q ss_pred             eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE
Q 001311          500 VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA  579 (1102)
Q Consensus       500 v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~  579 (1102)
                      |..+.+.  .  ..+++++.|+.|++||+.+.+....+..+...+..+.+                       ++.++++
T Consensus       141 v~~~~~~--~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~l~~  193 (293)
T d1p22a2         141 VNVVDFD--D--KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY-----------------------RDRLVVS  193 (293)
T ss_dssp             EEEEEEE--T--TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE-----------------------ETTEEEE
T ss_pred             cccceec--c--cccccccCCCceeeecCCCCcEEEEEcccccccccccC-----------------------CCCeEEE
Confidence            8877653  3  47889999999999999988777766665555444433                       2356999


Q ss_pred             EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCC
Q 001311          580 AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDG  638 (1102)
Q Consensus       580 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~  638 (1102)
                      ++.||.|++||+.+.+.+.....+..  .+  ..+++++.+|++++.||.|++||+...
T Consensus       194 ~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~~~~~~~l~sg~~dg~i~iwd~~~~  248 (293)
T d1p22a2         194 GSSDNTIRLWDIECGACLRVLEGHEE--LV--RCIRFDNKRIVSGAYDGKIKVWDLVAA  248 (293)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCCSS--CE--EEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred             ecCCCEEEEEecccceeeeeecccce--ee--eeccccceEEEEEcCCCEEEEEECCCC
Confidence            99999999999999999888876543  34  457788999999999999999998654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=7.9e-27  Score=266.71  Aligned_cols=366  Identities=9%  Similarity=0.013  Sum_probs=246.3

Q ss_pred             EEEecCCCe-EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCC
Q 001311          352 MDFHPVQQT-LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRH  430 (1102)
Q Consensus       352 v~~spdg~~-llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~  430 (1102)
                      +.++.|.+. ++++.+.||+|+|||+.+++.+..                   +..| ..+..++|||||++|++++.|+
T Consensus        24 ~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~   83 (426)
T d1hzua2          24 QLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDA   83 (426)
T ss_dssp             CCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTS
T ss_pred             ccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCC
Confidence            345556443 457788899999999999998874                   4455 4699999999999999999999


Q ss_pred             eEEEEEccCCceee--eEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeec
Q 001311          431 IVQIYSYHGGDEVR--QHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHK  508 (1102)
Q Consensus       431 ~v~vwd~~~~~~~~--~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~  508 (1102)
                      +|++||+.+++...  .+....+|.+.+.+++|+|||+. +++++..++.+++||..++.++..+.+|...+..+.+...
T Consensus        84 ~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  162 (426)
T d1hzua2          84 RIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE  162 (426)
T ss_dssp             EEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESC
T ss_pred             CEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCC
Confidence            99999999987532  23334578888889999999995 4567778999999999999999999888877766666443


Q ss_pred             CCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEE
Q 001311          509 ENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIK  587 (1102)
Q Consensus       509 ~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~  587 (1102)
                      +. ...+..+.|+...+|.......+............+...+.+         ..+..+.++|++++++++. .+..+.
T Consensus       163 ~~-~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~~a~~~~~~~~  232 (426)
T d1hzua2         163 PR-VAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAA---------PFLADGGWDSSHRYFMTAANNSNKVA  232 (426)
T ss_dssp             CC-EEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECC---------SSEEEEEECTTSCEEEEEETTCSEEE
T ss_pred             Cc-eeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccC---------CccEeeeECCCCcEEEeeeeccccee
Confidence            33 345666677776666555444333333222222222222222         2566788888888887765 677899


Q ss_pred             EEECCCcceEEEEcCCCCCCCcCeEEEcCCCCE-EE--EEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcc
Q 001311          588 FWDMDSVQLLTSIDADGGLPASPRIRFNKDGCL-LA--VSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTIS  664 (1102)
Q Consensus       588 iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~--~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  664 (1102)
                      +|+..+++.+................+...+.. +.  ....|+.+.+|+......                        
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~------------------------  288 (426)
T d1hzua2         233 VIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH------------------------  288 (426)
T ss_dssp             EEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC------------------------
T ss_pred             eeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccc------------------------
Confidence            999999998888765444333334444433221 11  122355555554322200                        


Q ss_pred             cchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEE
Q 001311          665 PISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISR  744 (1102)
Q Consensus       665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~  744 (1102)
                                                                        .+|+                          
T Consensus       289 --------------------------------------------------~~~~--------------------------  292 (426)
T d1hzua2         289 --------------------------------------------------PQYA--------------------------  292 (426)
T ss_dssp             --------------------------------------------------TTTB--------------------------
T ss_pred             --------------------------------------------------cccc--------------------------
Confidence                                                              0000                          


Q ss_pred             EEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEE-
Q 001311          745 LIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMS-  823 (1102)
Q Consensus       745 ~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las-  823 (1102)
                                                                      ++.. ..+.  +|...+..++|+||+++|++ 
T Consensus       293 ------------------------------------------------~~~~-~~l~--g~~~~v~~v~~sPdg~~l~v~  321 (426)
T d1hzua2         293 ------------------------------------------------WKKV-AELQ--GQGGGSLFIKTHPKSSHLYVD  321 (426)
T ss_dssp             ------------------------------------------------TSEE-EEEE--CSSSCCCCEECCTTCSEEEEC
T ss_pred             ------------------------------------------------ceEe-EEEe--cCCCceeEEEcCCCCceEEEe
Confidence                                                            0000 0011  15666777777888877774 


Q ss_pred             ------Ee-CCeEEEEEcCCCceeeee---------cCCCCCeeEEEEecCCCcEEEE-E----eCCCcEEEEEeeccee
Q 001311          824 ------AS-GGKISLFNMMTFKTMATF---------MPPPPAATFLAFHPQDNNIIAI-G----MDDSSIQIYNVRVDEV  882 (1102)
Q Consensus       824 ------~s-dg~I~iwd~~~~~~~~~~---------~~~~~~i~~l~~sp~d~~~las-g----~~dg~v~vwd~~~~~~  882 (1102)
                            ++ +++|+|||+.+++...++         ..|...|.+++||| ||+++++ +    +.+|.|+|||..+++.
T Consensus       322 ~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         322 TTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             CTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             ecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCCeE
Confidence                  33 688999999998876554         24566799999999 8876643 2    3678999999999999


Q ss_pred             eeeeccccccceeEEEecCCCEEE
Q 001311          883 KSKLKGHSKRITGLAFSHALNVLV  906 (1102)
Q Consensus       883 ~~~l~~h~~~V~~l~~s~d~~~l~  906 (1102)
                      ...+.++.      .++|+|++-+
T Consensus       401 ~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         401 KAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             EEEECCTT------CCSEEEEEEH
T ss_pred             EEEECCCC------ccCCCceEeE
Confidence            98888774      3357776643

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.6e-27  Score=263.32  Aligned_cols=343  Identities=14%  Similarity=0.077  Sum_probs=231.2

Q ss_pred             eEEEEec-CCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC
Q 001311          350 MSMDFHP-VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS  428 (1102)
Q Consensus       350 ~~v~~sp-dg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~  428 (1102)
                      .+-.||| ||++ +|+++ +|.|+|||+.++..+.                     .+|...|.+++|||||++|++++.
T Consensus         6 ~~~~fSP~dG~~-~a~~~-~g~v~v~d~~~~~~~~---------------------~~~~~~v~~~~~spDg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGDL-IAFVS-RGQAFIQDVSGTYVLK---------------------VPEPLRIRYVRRGGDTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGGC-EEEEE-TTEEEEECTTSSBEEE---------------------CSCCSCEEEEEECSSSEEEEEEEE
T ss_pred             hcccccCCCCCE-EEEEE-CCeEEEEECCCCcEEE---------------------ccCCCCEEEEEECCCCCEEEEEEc
Confidence            3467999 9996 67665 4899999999887654                     268999999999999999998776


Q ss_pred             CC--eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeee
Q 001311          429 RH--IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPH  506 (1102)
Q Consensus       429 d~--~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~  506 (1102)
                      +.  .|++||+++++..+    +..|...|.+++|+||++  +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus        63 ~~g~~v~v~d~~~~~~~~----~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAEK----FEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             TTEEEEEEEETTTCCEEE----CCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCEEEEEECCCCcEEE----eeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence            54  79999999987543    778999999999999999  79999999999999999999999999999999988874


Q ss_pred             ecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeE
Q 001311          507 HKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSI  586 (1102)
Q Consensus       507 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i  586 (1102)
                        ++|++|+.++.++..                                                     .+.+..++.+
T Consensus       137 --pdg~~la~~~~~~~~-----------------------------------------------------~~~~~~~~~~  161 (360)
T d1k32a3         137 --DNSRFIAYGFPLKHG-----------------------------------------------------ETDGYVMQAI  161 (360)
T ss_dssp             --TTSCEEEEEEEECSS-----------------------------------------------------TTCSCCEEEE
T ss_pred             --cceeeeeeecccccc-----------------------------------------------------ceeeccccce
Confidence              566777765432221                                                     1223445678


Q ss_pred             EEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccc
Q 001311          587 KFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPI  666 (1102)
Q Consensus       587 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (1102)
                      ++||+.+++.......   ...+..++|+|||++|++++.++.+.+|+...........  ......        .+.. 
T Consensus       162 ~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~--~~~~~~--------~~~~-  227 (360)
T d1k32a3         162 HVYDMEGRKIFAATTE---NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVV--SKPFVI--------PLIP-  227 (360)
T ss_dssp             EEEETTTTEEEECSCS---SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSC--BEEEEE--------ESST-
T ss_pred             eeeccccCceeeeccc---ccccccccccCCCCEEEEEeCCCceEcccccccceeeccc--cceEEE--------eccc-
Confidence            9999988776544432   2357789999999999999999999999875542111000  000000        0000 


Q ss_pred             hhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCC---CccceEecccCCCCCccccccCCCcccccceE
Q 001311          667 SAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESN---DKSKVWKLTELSEPNQCRSLRLPENLRATKIS  743 (1102)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~  743 (1102)
                                              .......+.+++..+.++..+   ...++|.+....  .....+    ..+.+.+.
T Consensus       228 ------------------------~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~  277 (360)
T d1k32a3         228 ------------------------GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP--GDYRMI----IPLESSIL  277 (360)
T ss_dssp             ------------------------TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC--BCEEEE----EECSSEEE
T ss_pred             ------------------------CccccceECCCcCcccccceeecccccceeecccCc--CceeEe----eecCCCce
Confidence                                    000111222333333332222   123344433211  111111    11223334


Q ss_pred             EEEEcc---CCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311          744 RLIFTN---SGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  820 (1102)
Q Consensus       744 ~~~~s~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~  820 (1102)
                      .+.+..   ++.++++++.++.+++||+.                      +++...       +...|.+++|+|||++
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~----------------------~~~~~~-------~~~~v~~~~~SpDG~~  328 (360)
T d1k32a3         278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVK----------------------TRKVTE-------VKNNLTDLRLSADRKT  328 (360)
T ss_dssp             EEECCCCCSHHHHHHCCCCCEEEEEEETT----------------------TCCEEE-------EEEEEEEEEECTTSCE
T ss_pred             EEEEEecCCCeeEEEecCCCCEEEEEECC----------------------CCeEEE-------ecCCcCEEEECCCCCE
Confidence            444433   33456666777888888763                      322211       4556899999999999


Q ss_pred             EEEEe-CCeEEEEEcCCCceeeeecCCCCC
Q 001311          821 VMSAS-GGKISLFNMMTFKTMATFMPPPPA  849 (1102)
Q Consensus       821 las~s-dg~I~iwd~~~~~~~~~~~~~~~~  849 (1102)
                      |++++ ||.|++||+++++...++..+..+
T Consensus       329 l~~~~~Dg~i~v~d~~~~~~~~~~~~d~~~  358 (360)
T d1k32a3         329 VMVRKDDGKIYTFPLEKPEDERTVETDKRP  358 (360)
T ss_dssp             EEEEETTSCEEEEESSCTTSCEECCCCSSC
T ss_pred             EEEEECCCeEEEEECCCCCcceEEEecccc
Confidence            99999 899999999999888877655544

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=8.9e-26  Score=256.87  Aligned_cols=354  Identities=14%  Similarity=0.087  Sum_probs=249.1

Q ss_pred             EEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEEccCC
Q 001311          361 LLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGG  440 (1102)
Q Consensus       361 llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd~~~~  440 (1102)
                      ++++.+.||+|.|||..+++.+..                   +..| ..+..++|||||++|++++.|++|++||+.++
T Consensus        34 ~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~   93 (432)
T d1qksa2          34 FSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMK   93 (432)
T ss_dssp             EEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSS
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCC
Confidence            568999999999999999999885                   4444 36999999999999999999999999999987


Q ss_pred             ce--eeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCC-----------CeEEEeeee
Q 001311          441 DE--VRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEA-----------PVYSVCPHH  507 (1102)
Q Consensus       441 ~~--~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~-----------~v~~v~~~~  507 (1102)
                      +.  ...+....+|.+.+.+.+|+|||++ ++++++.+++|++||..+++++..+..|..           ....+.++ 
T Consensus        94 ~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-  171 (432)
T d1qksa2          94 EPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-  171 (432)
T ss_dssp             SCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-
T ss_pred             CceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC-
Confidence            64  2333344567788888899999995 467889999999999999999988765543           34445543 


Q ss_pred             cCCcc-EEEEEeCCCeEEEEEcCCCCCeeeec-CCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCC
Q 001311          508 KENIQ-FIFSTALDGKIKAWLYDNLGSRVDYE-APGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDF  584 (1102)
Q Consensus       508 ~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg  584 (1102)
                       +++. ++++...++.|.+||..+.+...... ..+.                     ....++++|+|+++++++ .++
T Consensus       172 -~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~---------------------~~~~~~~spdg~~~~va~~~~~  229 (432)
T d1qksa2         172 -HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAER---------------------FLHDGGLDGSHRYFITAANARN  229 (432)
T ss_dssp             -SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCS---------------------SEEEEEECTTSCEEEEEEGGGT
T ss_pred             -CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccC---------------------ccccceECCCCCEEEEeccccc
Confidence             4444 45667778999999987654332211 1112                     344556666666676665 567


Q ss_pred             eEEEEECCCcceEEEEcCCC---CCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCCccceeecccccccccccCCCCC
Q 001311          585 SIKFWDMDSVQLLTSIDADG---GLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGIRLLRTFENLAYDASRTSENSK  660 (1102)
Q Consensus       585 ~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  660 (1102)
                      .+.++|..+++.+..+....   +........+...+...++.. .++.|.+|+.....                     
T Consensus       230 ~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~---------------------  288 (432)
T d1qksa2         230 KLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEG---------------------  288 (432)
T ss_dssp             EEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTT---------------------
T ss_pred             eEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEeccccccc---------------------
Confidence            89999999988887765322   111222233333333333332 25556666532210                     


Q ss_pred             CCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCccccc
Q 001311          661 PTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRAT  740 (1102)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  740 (1102)
                                                                                              .  ..+..
T Consensus       289 ------------------------------------------------------------------------~--~~~~~  294 (432)
T d1qksa2         289 ------------------------------------------------------------------------H--PDNAW  294 (432)
T ss_dssp             ------------------------------------------------------------------------C--TTTBT
T ss_pred             ------------------------------------------------------------------------c--ccccc
Confidence                                                                                    0  11445


Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCe
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSY  820 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~  820 (1102)
                      .+....+++++..+++++.+...++|.....                               ..|......+++ ||++.
T Consensus       295 ~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~-------------------------------~~~~~~~~sv~v-pDg~~  342 (432)
T d1qksa2         295 KILDSFPALGGGSLFIKTHPNSQYLYVDATL-------------------------------NPEAEISGSVAV-FDIKA  342 (432)
T ss_dssp             SEEEEEECSCSCCCCEECCTTCSEEEEECTT-------------------------------CSSHHHHTCEEE-EEGGG
T ss_pred             EEEEEEEcCCCCeEEEEecCCccceeecccC-------------------------------CCCCCeeeEEEE-Eechh
Confidence            6788899999988999998888888874210                               012223344555 99999


Q ss_pred             EEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe-----CCCcEEEEEeecceeeeeeccc
Q 001311          821 VMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM-----DDSSIQIYNVRVDEVKSKLKGH  889 (1102)
Q Consensus       821 las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~-----~dg~v~vwd~~~~~~~~~l~~h  889 (1102)
                      +++++ |+.+++|++.++.   .+..|...+.+++||| ||++|+++.     .+|.|.|||..++++...+++.
T Consensus       343 la~~s~d~~~k~w~~~~~~---~l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         343 MTGDGSDPEFKTLPIAEWA---GITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             CCCSSSCCCEEEECHHHHH---TCCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             hcccccCCceEeccccccc---ccCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            99999 8999999986653   2345777899999999 888776553     4689999999999998887753

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=6.3e-26  Score=250.27  Aligned_cols=309  Identities=10%  Similarity=0.009  Sum_probs=213.8

Q ss_pred             EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE---EeecCCCCeEEEeeeecCCccEEEEEeCCCeEE
Q 001311          448 EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY---IFEGHEAPVYSVCPHHKENIQFIFSTALDGKIK  524 (1102)
Q Consensus       448 ~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~---~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~  524 (1102)
                      ...+|++.|++|+|+|+++  +|++|+.||+|+|||+.++....   ...+|.++|.+++|++. ++.+|++|+.||.|+
T Consensus         6 ~~~~h~d~I~~l~fsp~~~--~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~-~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEIL   82 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGT--EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEE
T ss_pred             cCCCCCCCEEEEEEeCCCC--EEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCC-CCCEEEEccccccee
Confidence            4679999999999999999  89999999999999998765433   33469999999999764 346899999999999


Q ss_pred             EEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE----E
Q 001311          525 AWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS----I  600 (1102)
Q Consensus       525 ~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----~  600 (1102)
                      +|++...........+....                    .....+.++...+++++.++.+++||++.+.....    .
T Consensus        83 ~w~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~  142 (342)
T d1yfqa_          83 KVDLIGSPSFQALTNNEANL--------------------GICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNL  142 (342)
T ss_dssp             EECSSSSSSEEECBSCCCCS--------------------CEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEES
T ss_pred             eeeccccccccccccccccc--------------------ccccccccccccccccccccccceeeccccccceeeeccc
Confidence            99998866655443333222                    22333444556899999999999999875543322    2


Q ss_pred             cCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccc
Q 001311          601 DADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLA  680 (1102)
Q Consensus       601 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  680 (1102)
                      ..+..........+.+++..+++++.||.|++|++............                                 
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~---------------------------------  189 (342)
T d1yfqa_         143 NSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE---------------------------------  189 (342)
T ss_dssp             CSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE---------------------------------
T ss_pred             ccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeee---------------------------------
Confidence            22222234456778889999999999999999998765211110000                                 


Q ss_pred             cccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEE-EEccCCceEEEeec
Q 001311          681 DRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRL-IFTNSGNAILALAS  759 (1102)
Q Consensus       681 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~s~~g~~l~~~~~  759 (1102)
                                                                             ......+... .+..++..+++++.
T Consensus       190 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~s~  214 (342)
T d1yfqa_         190 -------------------------------------------------------SGLKYQIRDVALLPKEQEGYACSSI  214 (342)
T ss_dssp             -------------------------------------------------------CSCSSCEEEEEECSGGGCEEEEEET
T ss_pred             -------------------------------------------------------cccccceeeeEeecCCCCEEEeecC
Confidence                                                                   0011222232 33445666777778


Q ss_pred             CceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCce
Q 001311          760 NAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKT  839 (1102)
Q Consensus       760 dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~  839 (1102)
                      ||.+.+|++.....                      .   .    .....                    ..+  .....
T Consensus       215 dg~~~v~~~~~~~~----------------------~---~----~~~~~--------------------~~~--~~~~~  243 (342)
T d1yfqa_         215 DGRVAVEFFDDQGD----------------------D---Y----NSSKR--------------------FAF--RCHRL  243 (342)
T ss_dssp             TSEEEEEECCTTCC----------------------S---T----TCTTC--------------------EEE--ECCCC
T ss_pred             CCeEEEEEecCCcc----------------------e---e----ecccc--------------------cee--eeeee
Confidence            88888876521100                      0   0    00000                    000  01111


Q ss_pred             eeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEc
Q 001311          840 MATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSS  919 (1102)
Q Consensus       840 ~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~  919 (1102)
                      ......|...+++++|+| ++++||+|+.||.|+|||+.+++.+..+..+ ..+..++|++++++|++++.|.++++|..
T Consensus       244 ~~~~~~~~~~v~~l~~sp-~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         244 NLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             ccCCCcccccceeEEecC-CccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            122345777899999999 8999999999999999999999998888643 34566888999999999999998888865


Q ss_pred             C
Q 001311          920 D  920 (1102)
Q Consensus       920 ~  920 (1102)
                      .
T Consensus       322 ~  322 (342)
T d1yfqa_         322 I  322 (342)
T ss_dssp             S
T ss_pred             e
Confidence            4

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=2.2e-25  Score=253.56  Aligned_cols=362  Identities=9%  Similarity=0.013  Sum_probs=250.3

Q ss_pred             cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee--EEee-
Q 001311          418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ--YIFE-  494 (1102)
Q Consensus       418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~--~~~~-  494 (1102)
                      ++.-++++.+.||+|.|||.++++.++.   +..| ..+..++|||||+  ++++++.|++|++||+.+++..  ..+. 
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~---~~~g-~~~~~v~fSpDG~--~l~~~s~dg~v~~~d~~t~~~~~~~~i~~  103 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYEIKTV---LDTG-YAVHISRLSASGR--YLFVIGRDGKVNMIDLWMKEPTTVAEIKI  103 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEE---EECS-SCEEEEEECTTSC--EEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCcEEEE---EeCC-CCeeEEEECCCCC--EEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence            3334457889999999999999998774   5555 4699999999999  7888999999999999987643  3332 


Q ss_pred             --cCCCCeEEEeeeecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEc
Q 001311          495 --GHEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFD  571 (1102)
Q Consensus       495 --~h~~~v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~  571 (1102)
                        +|.+.+.+..|  ++||++| ++++.+++|++||..+.+....+..+...+....+.+++          ....+.++
T Consensus       104 ~~~~~~~~~s~~~--SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~s  171 (432)
T d1qksa2         104 GSEARSIETSKME--GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP----------RVAAILAS  171 (432)
T ss_dssp             CSEEEEEEECCST--TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC----------CEEEEEEC
T ss_pred             CCCCCCeEEeccc--CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC----------ceeEEEEC
Confidence              34444544444  5677775 788889999999999988887776665555555555554          34556778


Q ss_pred             CCCCEEE-EEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC-CcEEEEEccCCccceeeccccc
Q 001311          572 TTKNRFL-AAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-NGIKILATSDGIRLLRTFENLA  649 (1102)
Q Consensus       572 ~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~  649 (1102)
                      +++..++ +...++.|.+||..+++.........+ .....++|+|+|+++++++.+ +.+.+++..+. +....+....
T Consensus       172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g-~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~-~~~~~~~~g~  249 (432)
T d1qksa2         172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE-RFLHDGGLDGSHRYFITAANARNKLVVIDTKEG-KLVAIEDTGG  249 (432)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC-SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEECSS
T ss_pred             CCCCEEEEEEccCCeEEEEEccCCCcceEEEEccc-CccccceECCCCCEEEEeccccceEEEeecccc-eEEEEeccCc
Confidence            8887664 566789999999988775543332211 246789999999988887764 56778887665 3333221100


Q ss_pred             ccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccc
Q 001311          650 YDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCR  729 (1102)
Q Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~  729 (1102)
                      ..                                                                              
T Consensus       250 ~~------------------------------------------------------------------------------  251 (432)
T d1qksa2         250 QT------------------------------------------------------------------------------  251 (432)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             cccCCCcccccceEEEEEccCCceEEEee-cCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCC
Q 001311          730 SLRLPENLRATKISRLIFTNSGNAILALA-SNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEA  808 (1102)
Q Consensus       730 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  808 (1102)
                             .+........+...+....+.. .++.+.+|....                      ..     .  ..+...
T Consensus       252 -------~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~----------------------~~-----~--~~~~~~  295 (432)
T d1qksa2         252 -------PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDP----------------------EG-----H--PDNAWK  295 (432)
T ss_dssp             -------BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT----------------------TT-----C--TTTBTS
T ss_pred             -------cccCcccceecCCCCceecccccCCceEEeccccc----------------------cc-----c--cccccE
Confidence                   0111222223333333233222 256777775421                      11     1  125667


Q ss_pred             eeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311          809 VPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  887 (1102)
                      +....+++++..+++++ +++.++|+..+..      .|......+++ | |++.|++++.|+.+++|++.++.   .+.
T Consensus       296 v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~------~~~~~~~sv~v-p-Dg~~la~~s~d~~~k~w~~~~~~---~l~  364 (432)
T d1qksa2         296 ILDSFPALGGGSLFIKTHPNSQYLYVDATLN------PEAEISGSVAV-F-DIKAMTGDGSDPEFKTLPIAEWA---GIT  364 (432)
T ss_dssp             EEEEEECSCSCCCCEECCTTCSEEEEECTTC------SSHHHHTCEEE-E-EGGGCCCSSSCCCEEEECHHHHH---TCC
T ss_pred             EEEEEEcCCCCeEEEEecCCccceeecccCC------CCCCeeeEEEE-E-echhhcccccCCceEeccccccc---ccC
Confidence            88999999999999887 8999999876533      23333445555 7 89999999999999999987653   334


Q ss_pred             cccccceeEEEecCCCEEEEEc-----CCCcEEEEEcCCCcc
Q 001311          888 GHSKRITGLAFSHALNVLVSSG-----ADSQLCVWSSDGWEK  924 (1102)
Q Consensus       888 ~h~~~V~~l~~s~d~~~l~s~s-----~Dg~i~vwd~~~~~~  924 (1102)
                      .|...|.+++|||||++++.+.     .++.|+|||..+.+.
T Consensus       365 ~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~  406 (432)
T d1qksa2         365 EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLEL  406 (432)
T ss_dssp             SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEE
T ss_pred             CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceE
Confidence            5778899999999999886543     468899999999764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=4.3e-26  Score=254.47  Aligned_cols=283  Identities=9%  Similarity=0.007  Sum_probs=208.2

Q ss_pred             cccceEEEEEccCCceEEEeecC--ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          738 RATKISRLIFTNSGNAILALASN--AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       738 ~~~~i~~~~~s~~g~~l~~~~~d--g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                      |...|.+++|+|||+.|++++.+  ..+++|++                      .++....  +  ..|...+.+++|+
T Consensus        41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~----------------------~~~~~~~--~--~~~~~~v~~~~~s   94 (360)
T d1k32a3          41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDY----------------------RTGKAEK--F--EENLGNVFAMGVD   94 (360)
T ss_dssp             CCSCEEEEEECSSSEEEEEEEETTEEEEEEEET----------------------TTCCEEE--C--CCCCCSEEEEEEC
T ss_pred             CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEEC----------------------CCCcEEE--e--eCCCceEEeeeec
Confidence            66789999999999999887765  36777775                      3333332  1  2388899999999


Q ss_pred             cCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEe----------CCCcEEEEEeecceeee
Q 001311          816 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGM----------DDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~----------~dg~v~vwd~~~~~~~~  884 (1102)
                      ||+++|++++ ++.+++|++.+++....+..|...+.+++|+| |+++||.+.          .++.+++||+.+++...
T Consensus        95 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~  173 (360)
T d1k32a3          95 RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA  173 (360)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE
T ss_pred             ccccccceeccccccccccccccceeeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCceee
Confidence            9999999998 89999999999999999999999999999999 899998654          44579999999877654


Q ss_pred             eeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccccee--eeecCCCCCCCCCCCcEEEEccCCcEEEEE-eC-
Q 001311          885 KLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR--FLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HE-  960 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d-  960 (1102)
                       +..|...+..++|+|||++|++++.|+.+.+|+..........  .......+.   ..+..+.|++++..++.+ .+ 
T Consensus       174 -~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~  249 (360)
T d1k32a3         174 -ATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDL  249 (360)
T ss_dssp             -CSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCC
T ss_pred             -ecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEeccc---CccccceECCCcCcccccceee
Confidence             4446777889999999999999999999999997654321100  000011111   234556788888776653 21 


Q ss_pred             ----CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcC---CCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCC
Q 001311          961 ----TQLAIFETTKLECVKQWVPRESSAPITHATFSC---DSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSS 1033 (1102)
Q Consensus       961 ----~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~sp---d~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~ 1033 (1102)
                          ..+..++...+......   .+.+.+..+.+..   ++.++++++.++.|++||+.+++.... .       +   
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-~-------~---  315 (360)
T d1k32a3         250 NDMYKRSSPINVDPGDYRMII---PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-K-------N---  315 (360)
T ss_dssp             TTGGGGCEECSCCCBCEEEEE---ECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE-E-------E---
T ss_pred             cccccceeecccCcCceeEee---ecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEe-c-------C---
Confidence                23444455555443332   2334455555544   445688899999999999999876421 1       1   


Q ss_pred             CcccceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1034 SNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1034 ~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                       .+.  +++|+| ||++|++++.||.|++||+.+++
T Consensus       316 -~v~--~~~~Sp-DG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         316 -NLT--DLRLSA-DRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             -EEE--EEEECT-TSCEEEEEETTSCEEEEESSCTT
T ss_pred             -CcC--EEEECC-CCCEEEEEECCCeEEEEECCCCC
Confidence             144  899999 79999999999999999999887

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=8.3e-24  Score=241.38  Aligned_cols=366  Identities=9%  Similarity=0.024  Sum_probs=240.5

Q ss_pred             EEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee
Q 001311          458 DIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY  537 (1102)
Q Consensus       458 ~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~  537 (1102)
                      ...++.|.+.+++++.+.||+|+|||+.+++.+.++..|. .+.+++|  ++||+++++++.|++|++||+.+.+.....
T Consensus        23 ~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vaf--SPDGk~l~~~~~d~~v~vwd~~t~~~~~~~   99 (426)
T d1hzua2          23 KQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVA   99 (426)
T ss_dssp             SCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             cccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEE--CCCCCEEEEEeCCCCEEEEEccCCceeEEE
Confidence            3457777777678999999999999999999999999775 5888887  567899999999999999999987755432


Q ss_pred             cCC-CCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEE-EeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEc
Q 001311          538 EAP-GRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLA-AGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFN  615 (1102)
Q Consensus       538 ~~~-~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  615 (1102)
                      ... ......                 .+..++|+|||+++++ +..++.+++||..++.++..+..+..  .+..+.+.
T Consensus       100 ~i~~~~~~~~-----------------~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~  160 (426)
T d1hzua2         100 EIKIGIEARS-----------------VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYH  160 (426)
T ss_dssp             EEECCSEEEE-----------------EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEE
T ss_pred             EEeCCCCCcc-----------------eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--Cccceeec
Confidence            211 111111                 1222344556666655 55899999999999999888876644  46667777


Q ss_pred             CCCCE-EEEEECCCcEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCC
Q 001311          616 KDGCL-LAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNG  694 (1102)
Q Consensus       616 ~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  694 (1102)
                      +++.. .++.+.|+...++......                                                       
T Consensus       161 ~~~~~~~i~~s~d~~~~~~~~~~~~-------------------------------------------------------  185 (426)
T d1hzua2         161 PEPRVAAIIASHEHPEFIVNVKETG-------------------------------------------------------  185 (426)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTT-------------------------------------------------------
T ss_pred             CCCceeEEEECCCCCEEEEecCCCC-------------------------------------------------------
Confidence            77764 4455566666555432220                                                       


Q ss_pred             CccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccC
Q 001311          695 DVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERN  774 (1102)
Q Consensus       695 ~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  774 (1102)
                                        .+.+++..                             ++..+.         +..       
T Consensus       186 ------------------~i~~~~~~-----------------------------~~~~~~---------~~~-------  202 (426)
T d1hzua2         186 ------------------KVLLVNYK-----------------------------DIDNLT---------VTS-------  202 (426)
T ss_dssp             ------------------EEEEEECS-----------------------------SSSSCE---------EEE-------
T ss_pred             ------------------eEEEEEec-----------------------------ccccee---------eEE-------
Confidence                              00011100                             000000         000       


Q ss_pred             CCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCC--CCCe
Q 001311          775 SSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPP--PPAA  850 (1102)
Q Consensus       775 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~--~~~i  850 (1102)
                                                  .++...+..++++|++++++++.  +..+.+++..+++.+......  ....
T Consensus       203 ----------------------------~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (426)
T d1hzua2         203 ----------------------------IGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPG  254 (426)
T ss_dssp             ----------------------------EECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCS
T ss_pred             ----------------------------eccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccc
Confidence                                        01445577788888888877776  567888888888777665422  2223


Q ss_pred             eEEEEecCCCcEE--EEEeCCCcEEEEEeec-------ceeeeeeccccccceeEEEecCCCEEEE-------EcCCCcE
Q 001311          851 TFLAFHPQDNNII--AIGMDDSSIQIYNVRV-------DEVKSKLKGHSKRITGLAFSHALNVLVS-------SGADSQL  914 (1102)
Q Consensus       851 ~~l~~sp~d~~~l--asg~~dg~v~vwd~~~-------~~~~~~l~~h~~~V~~l~~s~d~~~l~s-------~s~Dg~i  914 (1102)
                      ..+.+.......+  +..+.|+.+.+|+...       ++....+.+|...+..++|+||+++|++       ++.|++|
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv  334 (426)
T d1hzua2         255 RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSV  334 (426)
T ss_dssp             CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCE
T ss_pred             ceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEE
Confidence            3333333122222  2334577787777653       4677889999999999999999999994       5568899


Q ss_pred             EEEEcCCCcccceee-eecCCCCCCCCCCCcEEEEccCCcEEEEE------eCCeEEEEEcCCceEeeeeccCCCCCCee
Q 001311          915 CVWSSDGWEKQKNRF-LQIPTGRTPTAQSDTRVQFHQDQIHFLVV------HETQLAIFETTKLECVKQWVPRESSAPIT  987 (1102)
Q Consensus       915 ~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~~------~d~~i~iwd~~~~~~~~~~~~~~h~~~v~  987 (1102)
                      +|||+.+++...... .....++......+..++|||||++++++      .++.|+|||.++++....+.  ++.    
T Consensus       335 ~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~--~~~----  408 (426)
T d1hzua2         335 AVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK--DPR----  408 (426)
T ss_dssp             EEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEEEC--CTT----
T ss_pred             EEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEEEC--CCC----
Confidence            999999877543221 11111122222468889999999988552      36789999999999887765  222    


Q ss_pred             EEEEcCCCcEEE
Q 001311          988 HATFSCDSQLVY  999 (1102)
Q Consensus       988 ~l~~spd~~~l~  999 (1102)
                        .++|+|+|-+
T Consensus       409 --~~tp~Gk~~~  418 (426)
T d1hzua2         409 --LITPTGKFNV  418 (426)
T ss_dssp             --CCSEEEEEEH
T ss_pred             --ccCCCceEeE
Confidence              4467887743

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=3.9e-21  Score=211.37  Aligned_cols=292  Identities=11%  Similarity=0.079  Sum_probs=207.1

Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEE-EEECCCcEEEEEccCCccceeeccccccccc
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLA-VSTNDNGIKILATSDGIRLLRTFENLAYDAS  653 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~  653 (1102)
                      +++++++.|+.|++||+.+++.+..+..+.....+.+++|+|||++++ +++.++.|.+||+.++ +.+..+..+...  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~~--   78 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTPE--   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBTT--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCCc--
Confidence            479999999999999999999999998765555678999999999875 5567899999999988 444433221100  


Q ss_pred             ccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccC
Q 001311          654 RTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRL  733 (1102)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~  733 (1102)
                                                                                                      
T Consensus        79 --------------------------------------------------------------------------------   78 (337)
T d1pbyb_          79 --------------------------------------------------------------------------------   78 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEE
Q 001311          734 PENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFA  813 (1102)
Q Consensus       734 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~  813 (1102)
                         .+...+..++|+|+++.++++..+.....|..                                             
T Consensus        79 ---~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~---------------------------------------------  110 (337)
T d1pbyb_          79 ---ERVKSLFGAALSPDGKTLAIYESPVRLELTHF---------------------------------------------  110 (337)
T ss_dssp             ---EEEECTTCEEECTTSSEEEEEEEEEEECSSCE---------------------------------------------
T ss_pred             ---ccccceeeEEEcCCCcEEEEeecCCcceeeec---------------------------------------------
Confidence               02233456889999998888877655444321                                             


Q ss_pred             EecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc
Q 001311          814 LSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI  893 (1102)
Q Consensus       814 ~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V  893 (1102)
                               ...+..+.+||..+++....+.. ...+..++|+| |++++++++.  .+.+||..+++....+..+... 
T Consensus       111 ---------~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-  176 (337)
T d1pbyb_         111 ---------EVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-  176 (337)
T ss_dssp             ---------EECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-
T ss_pred             ---------cccccceeeccccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-
Confidence                     11245677788887777777663 34577788888 7777777654  4677888777766665433221 


Q ss_pred             eeEEEecCC------------------------CEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEc
Q 001311          894 TGLAFSHAL------------------------NVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFH  949 (1102)
Q Consensus       894 ~~l~~s~d~------------------------~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  949 (1102)
                      ....+++++                        ..+..+..++.+.+|+..++...........       ..+..++++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  249 (337)
T d1pbyb_         177 AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD-------VFYFSTAVN  249 (337)
T ss_dssp             TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS-------SCEEEEEEC
T ss_pred             ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC-------cceEEEEec
Confidence            111222222                        1122223345688899887664332222111       256788999


Q ss_pred             cCCcEEEEEeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          950 QDQIHFLVVHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       950 pdg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +++.+++.. ++.|++||+.+++.+..+.   +...+.+++|+|||++|++++.|+.|+|||..+++.+.++.
T Consensus       250 ~~~~~~~~~-~~~i~v~d~~~~~~~~~~~---~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~  318 (337)
T d1pbyb_         250 PAKTRAFGA-YNVLESFDLEKNASIKRVP---LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             TTSSEEEEE-ESEEEEEETTTTEEEEEEE---CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             ccceEEEEc-cccEEEEECCCCcEEEEEc---CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEE
Confidence            999988764 5899999999999998875   35678999999999999999999999999999999999987

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1.4e-20  Score=206.87  Aligned_cols=313  Identities=9%  Similarity=0.032  Sum_probs=209.7

Q ss_pred             CeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCe
Q 001311          421 SLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPV  500 (1102)
Q Consensus       421 ~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v  500 (1102)
                      +||++++.|++|+|||+++++.+..+ .+..+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999999876542 23334566889999999995 34678889999999999999998887665433


Q ss_pred             -----EEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCC
Q 001311          501 -----YSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKN  575 (1102)
Q Consensus       501 -----~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~  575 (1102)
                           ..++|  ++++.++++++.+.....|                                                 
T Consensus        80 ~~~~~~~v~~--s~dg~~l~~~~~~~~~~~~-------------------------------------------------  108 (337)
T d1pbyb_          80 RVKSLFGAAL--SPDGKTLAIYESPVRLELT-------------------------------------------------  108 (337)
T ss_dssp             EEECTTCEEE--CTTSSEEEEEEEEEEECSS-------------------------------------------------
T ss_pred             cccceeeEEE--cCCCcEEEEeecCCcceee-------------------------------------------------
Confidence                 23444  4555666666554433322                                                 


Q ss_pred             EEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeeccccccccccc
Q 001311          576 RFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRT  655 (1102)
Q Consensus       576 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~  655 (1102)
                        .....++.+.+||..+++....+....   .+.+++|+|||+++++++.  .+.+||..++ .....+..+.....  
T Consensus       109 --~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~-~~~~~~~~~~~~~~--  178 (337)
T d1pbyb_         109 --HFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR--DLHVMDPEAG-TLVEDKPIQSWEAE--  178 (337)
T ss_dssp             --CEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS--SEEEEETTTT-EEEEEECSTTTTTT--
T ss_pred             --eccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC--CcceeeeecC-cEEEEeecCCcccc--
Confidence              223356789999999999888887544   3778999999999999864  5788998887 44443332211100  


Q ss_pred             CCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCC
Q 001311          656 SENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPE  735 (1102)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~  735 (1102)
                                                              ....+++..+.......                       
T Consensus       179 ----------------------------------------~~~~~~~~~~~~~~~~~-----------------------  195 (337)
T d1pbyb_         179 ----------------------------------------TYAQPDVLAVWNQHESS-----------------------  195 (337)
T ss_dssp             ----------------------------------------TBCCCBCCCCCCCCTTT-----------------------
T ss_pred             ----------------------------------------ceecCCcceeecccccc-----------------------
Confidence                                                    00011111111000000                       


Q ss_pred             cccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEe
Q 001311          736 NLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALS  815 (1102)
Q Consensus       736 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s  815 (1102)
                        +...+.......+.........++.+.+|+.                      .++.........  +...+..++++
T Consensus       196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~--~~~~~~~~~~~  249 (337)
T d1pbyb_         196 --GVMATPFYTARKDIDPADPTAYRTGLLTMDL----------------------ETGEMAMREVRI--MDVFYFSTAVN  249 (337)
T ss_dssp             --TEEEEEEEEEBTTSCTTSGGGEEEEEEEEET----------------------TTCCEEEEEEEE--CSSCEEEEEEC
T ss_pred             --ceeeeeeeeeeeccceeeecccCccEEEEEc----------------------CCCcEEEEEecC--CCcceEEEEec
Confidence              1111111222223333333444455555554                      333322222222  56678888999


Q ss_pred             cCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecc
Q 001311          816 KNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKG  888 (1102)
Q Consensus       816 ~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~  888 (1102)
                      +++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++++.||.|+|||..+++.+.+++-
T Consensus       250 ~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~  319 (337)
T d1pbyb_         250 PAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             ccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence            999887655 6899999999999988876 566789999999 999999999999999999999998888754

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=5.2e-21  Score=211.28  Aligned_cols=325  Identities=10%  Similarity=0.012  Sum_probs=213.1

Q ss_pred             EEEccCCCeEEEEECCCeEEEEEccCCceeeeEEEee-ccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEE
Q 001311          414 VIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEID-AHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYI  492 (1102)
Q Consensus       414 l~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~-~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~  492 (1102)
                      ++|+++++||++++.|++|.|||+++++.++.   +. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t---~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKS---CVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEE---EECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEE---EEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence            57899999999999999999999999987653   43 45667899999999995 457788899999999999999887


Q ss_pred             eecCCCC------eEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCcee
Q 001311          493 FEGHEAP------VYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLG  566 (1102)
Q Consensus       493 ~~~h~~~------v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~  566 (1102)
                      +......      +..+.|  ++||+++++++.+.....                                         
T Consensus        78 ~~~~~~~~~~~~~~~~v~~--s~DG~~l~v~~~~~~~~~-----------------------------------------  114 (346)
T d1jmxb_          78 ANLSSVPGEVGRSMYSFAI--SPDGKEVYATVNPTQRLN-----------------------------------------  114 (346)
T ss_dssp             EESCCSTTEEEECSSCEEE--CTTSSEEEEEEEEEEECS-----------------------------------------
T ss_pred             ecccccccccCCceEEEEE--ecCCCEEEEEecCCccee-----------------------------------------
Confidence            7543222      223333  344455554443222211                                         


Q ss_pred             EEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecc
Q 001311          567 VVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       567 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                                ......++.+.+|+..+++....+..+.....+..+.+++++..++.   ++.+.+|++.++ +....+.
T Consensus       115 ----------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~  180 (346)
T d1jmxb_         115 ----------DHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTG-KYTVALP  180 (346)
T ss_dssp             ----------SCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTC-CEEEEEC
T ss_pred             ----------eeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCC-CEEEEEe
Confidence                      12234577899999988776544332222234566778888876664   356899998877 4444443


Q ss_pred             cccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccc-cccCCCccceEecccCCCC
Q 001311          647 NLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI-TEESNDKSKVWKLTELSEP  725 (1102)
Q Consensus       647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~~w~~~~~~~~  725 (1102)
                      .+...                                          ......+++..+. ....++.+.+++..     
T Consensus       181 ~~~~~------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  213 (346)
T d1jmxb_         181 LRNWN------------------------------------------RKGYSAPDVLYFWPHQSPRHEFSMLYTI-----  213 (346)
T ss_dssp             STTCC------------------------------------------CTTBCCCBCCCCCCCCCTTCEEEEEEEE-----
T ss_pred             cCCCc------------------------------------------cceEEeccccEEEEEecCCCceEeeeee-----
Confidence            22211                                          1111222333332 22222333332211     


Q ss_pred             CccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCC
Q 001311          726 NQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNP  805 (1102)
Q Consensus       726 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  805 (1102)
                                         ..+......+.+...+..+.+|++                      .++.........  +
T Consensus       214 -------------------~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~--~  250 (346)
T d1jmxb_         214 -------------------ARFKDDKQDPATADLLYGYLSVDL----------------------KTGKTHTQEFAD--L  250 (346)
T ss_dssp             -------------------EEC-------CCCEEEEEEEEEET----------------------TTCCEEEEEEEE--C
T ss_pred             -------------------eeeccCceeEeeccCCceEEEEEC----------------------CCCceEEEEeec--c
Confidence                               112233333444555566666665                      333322222222  6


Q ss_pred             CCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeee
Q 001311          806 EEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      ...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||++|++++.||.|+|||..+++.+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~~  328 (346)
T d1jmxb_         251 TELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVKN  328 (346)
T ss_dssp             SSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred             cceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEEE
Confidence            677889999999999998888899999999999888876 445799999999 899999999999999999999999988


Q ss_pred             eccccc
Q 001311          886 LKGHSK  891 (1102)
Q Consensus       886 l~~h~~  891 (1102)
                      +..+.+
T Consensus       329 i~~p~g  334 (346)
T d1jmxb_         329 IKLPGG  334 (346)
T ss_dssp             EECSSS
T ss_pred             EECCCC
Confidence            875443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=2.3e-21  Score=214.09  Aligned_cols=330  Identities=10%  Similarity=-0.004  Sum_probs=222.3

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCCccceeeccc
Q 001311          569 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDGIRLLRTFEN  647 (1102)
Q Consensus       569 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~  647 (1102)
                      +++++++++++++.++.|.+||+.+++.+.++..... ..+.+++|+|||++++++ ..++.|++||+.++ +....+..
T Consensus         3 a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~-~~~~~~~~   80 (346)
T d1jmxb_           3 ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC-KNTFHANL   80 (346)
T ss_dssp             CCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEES
T ss_pred             cCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccC-eeeeeecc
Confidence            5677788999999999999999999999998875432 246789999999987554 56899999999888 33333221


Q ss_pred             ccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCc
Q 001311          648 LAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ  727 (1102)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~  727 (1102)
                      ....                                                                            
T Consensus        81 ~~~~----------------------------------------------------------------------------   84 (346)
T d1jmxb_          81 SSVP----------------------------------------------------------------------------   84 (346)
T ss_dssp             CCST----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            1000                                                                            


Q ss_pred             cccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCC
Q 001311          728 CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEE  807 (1102)
Q Consensus       728 ~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~  807 (1102)
                              ..+...+..++|+|||++++++..+.....|....          ....+.+|+..++....... ......
T Consensus        85 --------~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~-~~~~~~  145 (346)
T d1jmxb_          85 --------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPVR-TFPMPR  145 (346)
T ss_dssp             --------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCSE-EEECCS
T ss_pred             --------cccCCceEEEEEecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEEE-eeeccC
Confidence                    00223345688999999888877553333322110          01122334444443222110 001234


Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcE-EEEEeCCCcEEEEEeecceeeeee
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNI-IAIGMDDSSIQIYNVRVDEVKSKL  886 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~-lasg~~dg~v~vwd~~~~~~~~~l  886 (1102)
                      .+..+.++++++.++.  ++.+.+|++.+++.+..+..+. ....+.++| ++.. ++.+..++.+.+++...       
T Consensus       146 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------  214 (346)
T d1jmxb_         146 QVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAP-DVLYFWPHQSPRHEFSMLYTIA-------  214 (346)
T ss_dssp             SCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCC-BCCCCCCCCCTTCEEEEEEEEE-------
T ss_pred             ceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecCC-CccceEEec-cccEEEEEecCCCceEeeeeee-------
Confidence            4566777777776654  3568999999999888887554 356677888 5544 44445555666655321       


Q ss_pred             ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEE
Q 001311          887 KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF  966 (1102)
Q Consensus       887 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iw  966 (1102)
                                .+......++++..+..+.+|++.++.........    +.   ..+..+.+++++.+++...++.|.+|
T Consensus       215 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~v~v~  277 (346)
T d1jmxb_         215 ----------RFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT---ELYFTGLRSPKDPNQIYGVLNRLAKY  277 (346)
T ss_dssp             ----------EC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS---SCEEEEEECSSCTTEEEEEESEEEEE
T ss_pred             ----------eeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc---ceeEEEEEeCCCCEEEEecCCeEEEE
Confidence                      12234445666666778999999887653322221    11   25678899999999988777899999


Q ss_pred             EcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCC
Q 001311          967 ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAG 1030 (1102)
Q Consensus       967 d~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~g 1030 (1102)
                      |..+++.+..+..   ...+.+++|||||++|++++.|+.|+|||+++++.+.++.    +|.|
T Consensus       278 d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~----~p~g  334 (346)
T d1jmxb_         278 DLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK----LPGG  334 (346)
T ss_dssp             ETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE----CSSS
T ss_pred             ECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE----CCCC
Confidence            9999999887753   4579999999999999999999999999999999999998    6655

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=1e-19  Score=196.34  Aligned_cols=199  Identities=13%  Similarity=0.121  Sum_probs=152.5

Q ss_pred             eeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEE-EEEeCCCcEEEEEeecceeeee
Q 001311          809 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDDSSIQIYNVRVDEVKSK  885 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~dg~v~vwd~~~~~~~~~  885 (1102)
                      +..+++++++.++++..  ++.+.+|+..+++....+..+ ..+.+++|+| +++.+ +++..++.+.+|+..+++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (301)
T d1l0qa2          76 PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINT  153 (301)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccccccccccccccccccccceeeecccccceeeeecccc-ccceEEEeec-CCCeeeeeeccccceeeeeccccceeee
Confidence            34566777777665554  578999999988888877744 5678999999 66555 5666788999999999988887


Q ss_pred             eccccccceeEEEecCCCEEEEEcCC-CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e---C
Q 001311          886 LKGHSKRITGLAFSHALNVLVSSGAD-SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H---E  960 (1102)
Q Consensus       886 l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~---d  960 (1102)
                      +..+ ..+..++++++++.+++++.+ +.+.+|+....+...  .....       ..+..++|++++..++++ .   +
T Consensus       154 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~g~~~~v~~~~~~~  223 (301)
T d1l0qa2         154 VSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID--TVKVE-------AAPSGIAVNPEGTKAYVTNVDKYF  223 (301)
T ss_dssp             EECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE--EEECS-------SEEEEEEECTTSSEEEEEEECSSC
T ss_pred             cccC-CCceEEEeeccccceeeecccccccccccccceeeee--ccccc-------CCcceeecccccccccccccccee
Confidence            7755 447889999999988877765 556677776643321  11111       245789999999998763 3   3


Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEE-EEEeCCCeEEEEEcCCceeEEEeC
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLV-YACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l-~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +.|++||+.+++.+..+..   ...+.+++|+|||++| ++++.|++|+|||+++++++.++.
T Consensus       224 ~~v~v~D~~t~~~~~~~~~---~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         224 NTVSMIDTGTNKITARIPV---GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             CEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eeeeeeecCCCeEEEEEcC---CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            6899999999999887753   4578999999999987 577789999999999999998886

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.87  E-value=2e-19  Score=193.95  Aligned_cols=226  Identities=15%  Similarity=0.140  Sum_probs=167.8

Q ss_pred             eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE-EEECCCeEEEEEcc
Q 001311          360 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG-VAYSRHIVQIYSYH  438 (1102)
Q Consensus       360 ~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la-s~~~d~~v~vwd~~  438 (1102)
                      |+.++++.|++|.|||+++++.+...                   . ....+..++|||||++|+ +++.++.|++||+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i-------------------~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATI-------------------P-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEE-------------------E-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEE-------------------E-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            56778889999999999999887642                   1 124578999999999885 56678999999999


Q ss_pred             CCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccE-EEEE
Q 001311          439 GGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF-IFST  517 (1102)
Q Consensus       439 ~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~  517 (1102)
                      +++.+.   .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+. ...+++++  +++.. ++++
T Consensus        63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~dg~~~~~~~  134 (301)
T d1l0qa2          63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALS--PDGKKLYVTN  134 (301)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEEC--TTSSEEEEEE
T ss_pred             CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeeccccc-cceEEEee--cCCCeeeeee
Confidence            988765   355554 5689999999986 56778888999999999999999888554 45667764  44455 4666


Q ss_pred             eCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEe-CCCeEEEEECCCcce
Q 001311          518 ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DDFSIKFWDMDSVQL  596 (1102)
Q Consensus       518 s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~  596 (1102)
                      ..++.+.+|+..+......+....                      ....+.+++++..+++++ .++.+.+|+....+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVGR----------------------SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSV  192 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECCS----------------------SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccccceeeeeccccceeeecccCC----------------------CceEEEeeccccceeeecccccccccccccceee
Confidence            778999999998766554443322                      233445555556666665 457788888888777


Q ss_pred             EEEEcCCCCCCCcCeEEEcCCCCEEEEEECC---CcEEEEEccCC
Q 001311          597 LTSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIKILATSDG  638 (1102)
Q Consensus       597 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~  638 (1102)
                      ...+....   ....+++++++..++++..+   +.|++||..++
T Consensus       193 ~~~~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~  234 (301)
T d1l0qa2         193 IDTVKVEA---APSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (301)
T ss_dssp             EEEEECSS---EEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             eecccccC---CcceeeccccccccccccccceeeeeeeeecCCC
Confidence            77766443   36778999999988776543   56888887665

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.85  E-value=3.6e-18  Score=190.55  Aligned_cols=331  Identities=9%  Similarity=0.002  Sum_probs=214.0

Q ss_pred             cCCCCeeEEEEecCCCeEEEEE----ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccC
Q 001311          344 NQGSSPMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPD  419 (1102)
Q Consensus       344 ~h~~~v~~v~~spdg~~llasg----~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spd  419 (1102)
                      .+...+.+++++|||++++++.    +.++.|.|||..+++.+..                   +..+..  ..++||||
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~SpD   76 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAHS   76 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcCC
Confidence            4778899999999999866552    2346799999999998864                   333332  36999999


Q ss_pred             CCeEEEEE----------CCCeEEEEEccCCceeeeEEEeeccccCE-------EEEEEcCCCCeeEEEEecCCCcEEEE
Q 001311          420 GSLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHVGGV-------NDIAFSHPNKQLCVITCGDDKTIKVW  482 (1102)
Q Consensus       420 g~~las~~----------~d~~v~vwd~~~~~~~~~~~~l~~h~~~V-------~~v~~s~d~~~~~l~s~~~d~~i~vW  482 (1102)
                      |++|++++          .++.|.|||..+++.+..   +..+....       ..+.|++|++.+++.....++.+.+|
T Consensus        77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~---~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~  153 (373)
T d2madh_          77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV  153 (373)
T ss_pred             CCEEEEEeecCCcccccccceEEEEEECCCCcEEEE---EecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence            99999875          357899999999987653   33333332       45789999997555666677889999


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      +..+++......    ...++.++++.. ..+++.+.|+.+.+|+...............        +.+.       .
T Consensus       154 ~~~~~~~~~~~~----~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~--------~~~~-------~  213 (373)
T d2madh_         154 VQGGSSDDQLLS----SPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAML--------TAAQ-------N  213 (373)
T ss_pred             eccCCeEEEEec----cceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeecc--------ccCc-------c
Confidence            988877665443    345566655443 4668889999999999887655443321110        0000       0


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccce
Q 001311          563 RSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLL  642 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~  642 (1102)
                      .......+++++ .++..+.++.+.+|+...+...................+.|                          
T Consensus       214 ~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------  266 (373)
T d2madh_         214 LLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRP--------------------------  266 (373)
T ss_pred             ceeeeEEECCCc-eEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeecc--------------------------
Confidence            011122233332 35556677788888776544322211100000000000000                          


Q ss_pred             eecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccC
Q 001311          643 RTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTEL  722 (1102)
Q Consensus       643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~  722 (1102)
                                                                                                      
T Consensus       267 --------------------------------------------------------------------------------  266 (373)
T d2madh_         267 --------------------------------------------------------------------------------  266 (373)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCccccccCCCcccccceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCC
Q 001311          723 SEPNQCRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTD  802 (1102)
Q Consensus       723 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  802 (1102)
                                       .....+++++++..++..                                             
T Consensus       267 -----------------~~~~~~~~~~d~~~~~~~---------------------------------------------  284 (373)
T d2madh_         267 -----------------GGWQQVAYLKSSDGIYLL---------------------------------------------  284 (373)
T ss_pred             -----------------CcceeeEEecCCCeEEEe---------------------------------------------
Confidence                             111223444444432211                                             


Q ss_pred             CCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCc--EEEEEeCCCcEEEEEeec
Q 001311          803 SNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN--IIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       803 ~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~--~lasg~~dg~v~vwd~~~  879 (1102)
                                  ..++..++... ++.+.+||..+++.+..+. +...+..++|+| ||+  ++++++.|+.|+|||+.+
T Consensus       285 ------------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~vt~~~d~~v~v~D~~t  350 (373)
T d2madh_         285 ------------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             ------------cCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEEECC-CCCEEEEEEeCCCCeEEEEECCC
Confidence                        12333444444 7889999999999888876 566799999999 776  457889999999999999


Q ss_pred             ceeeeeeccccccceeEEEecC
Q 001311          880 DEVKSKLKGHSKRITGLAFSHA  901 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d  901 (1102)
                      ++.++.+..+....+.|++.++
T Consensus       351 g~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         351 GDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             CCEEEEECCCCCCCcEEEEecC
Confidence            9999999988888888887654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=9.7e-18  Score=185.57  Aligned_cols=244  Identities=10%  Similarity=-0.016  Sum_probs=148.2

Q ss_pred             eeEEEEecCCCeEEEEE----ecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          349 PMSMDFHPVQQTLLLVG----TNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       349 v~~v~~spdg~~llasg----~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      +.-.+.+|||++++++.    ..++.|.|||..+++.+..                   +..+  .+..++|||||++|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l~   62 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFIA   62 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEEE
Confidence            34456789999865553    3456799999999988764                   2222  334799999999998


Q ss_pred             EEE----------CCCeEEEEEccCCceeeeEEEeeccc----cCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeee
Q 001311          425 VAY----------SRHIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQ  490 (1102)
Q Consensus       425 s~~----------~d~~v~vwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~  490 (1102)
                      +++          .|+.|++||..+++.+........+.    .....++|++|++.++++..+.+..+.+||..+++.+
T Consensus        63 v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~  142 (355)
T d2bbkh_          63 HASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFK  142 (355)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEE
T ss_pred             EEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEe
Confidence            753          47899999999998766432211221    2345689999999755555667889999999999999


Q ss_pred             EEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEE
Q 001311          491 YIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQF  570 (1102)
Q Consensus       491 ~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~  570 (1102)
                      ..+..+..... ..  ...  ...+..+.|+...++.................               ......+....+
T Consensus       143 ~~~~~~~~~~~-~~--~~~--~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~  202 (355)
T d2bbkh_         143 RMLDVPDCYHI-FP--TAP--DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH---------------PEDEFLINHPAY  202 (355)
T ss_dssp             EEEECCSEEEE-EE--EET--TEEEEEETTSCEEEEECCSSSCCEEEECCCCS---------------CTTSCBCSCCEE
T ss_pred             eEEecCCcceE-ee--cCC--cceEEEcCCCCEEEEEecCCCeEEEEeccccc---------------ceecceeeeccc
Confidence            88875543221 11  112  34555666777666665544333222111100               001112223445


Q ss_pred             cCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEE
Q 001311          571 DTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKIL  633 (1102)
Q Consensus       571 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw  633 (1102)
                      .+++..++.++.++.+++|++..++................+.+.|++...++.+.|+...++
T Consensus       203 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~  265 (355)
T d2bbkh_         203 SQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYL  265 (355)
T ss_dssp             ETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             cCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEE
Confidence            556667888999999999999887643221111111122233444555555555555554444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.77  E-value=4.3e-16  Score=173.47  Aligned_cols=307  Identities=8%  Similarity=-0.064  Sum_probs=205.9

Q ss_pred             ceeEEEEcCCCCEEEEE-----eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEEC----------CC
Q 001311          564 SLGVVQFDTTKNRFLAA-----GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTN----------DN  628 (1102)
Q Consensus       564 ~i~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg  628 (1102)
                      ++..++++|+++.++..     +..+.|.+||..+++.+..+....    ...++|+|||++|+++..          ++
T Consensus        22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~----~~~~a~SpDG~~l~va~~~~~~~~~~~~~~   97 (373)
T d2madh_          22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF----LPNPVAAHSGSEFALASTSFSRIAKGKRTD   97 (373)
T ss_pred             CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC----CccEEEcCCCCEEEEEeecCCcccccccce
Confidence            44445555555566543     245679999999999999886442    346999999999998753          57


Q ss_pred             cEEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccc
Q 001311          629 GIKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITE  708 (1102)
Q Consensus       629 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  708 (1102)
                      .|.+||..++ +....+..+.....                                                    .  
T Consensus        98 ~v~v~D~~t~-~~~~~~~~~~~~~~----------------------------------------------------~--  122 (373)
T d2madh_          98 YVEVFDPVTF-LPIADIELPDAPRF----------------------------------------------------D--  122 (373)
T ss_pred             EEEEEECCCC-cEEEEEecCCccee----------------------------------------------------E--
Confidence            7899998877 44333322111000                                                    0  


Q ss_pred             cCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceEEEeec--CceEEeeeccccccCCCCcccccccce
Q 001311          709 ESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAILALAS--NAIHLLWKWQRTERNSSGKATASVAPQ  786 (1102)
Q Consensus       709 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~  786 (1102)
                                                   .......+.|+++++.++....  ++.+.+|+.                  
T Consensus       123 -----------------------------~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~------------------  155 (373)
T d2madh_         123 -----------------------------VGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQ------------------  155 (373)
T ss_pred             -----------------------------eccCCCcEEEEeCCCcEEEEEEcCCCceEEeec------------------
Confidence                                         0011235778888887665543  345555554                  


Q ss_pred             eccCCCccccccccCCCCCCCCeeEEEEecCCCeEE-EEe-CCeEEEEEcCCCceeeeecCC------CCCeeEEEEecC
Q 001311          787 LWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM-SAS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQ  858 (1102)
Q Consensus       787 ~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la-s~s-dg~I~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~  858 (1102)
                          ..+....       +.....++.++++++.+. +.+ |+.+.+|+..++........+      ......+.+++ 
T Consensus       156 ----~~~~~~~-------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  223 (373)
T d2madh_         156 ----GGSSDDQ-------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANK-  223 (373)
T ss_pred             ----cCCeEEE-------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECC-
Confidence                3332222       344567889999998664 444 899999999988776654432      22234455665 


Q ss_pred             CCcEEEEEeCCCcEEEEEeeccee--eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCC
Q 001311          859 DNNIIAIGMDDSSIQIYNVRVDEV--KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGR  936 (1102)
Q Consensus       859 d~~~lasg~~dg~v~vwd~~~~~~--~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~  936 (1102)
                      ++. ++..+.++.+++|+..++..  ...+..+......+.+.|.+...+..+.|+....+-                  
T Consensus       224 ~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~------------------  284 (373)
T d2madh_         224 SGR-IVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLL------------------  284 (373)
T ss_pred             Cce-EEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEe------------------
Confidence            554 44566789999999887653  334455566666677777776666666666543332                  


Q ss_pred             CCCCCCCcEEEEccCCcEEEE-EeCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcE--EEEEeCCCeEEEEEcC
Q 001311          937 TPTAQSDTRVQFHQDQIHFLV-VHETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQL--VYACFLDATVCVFSAA 1013 (1102)
Q Consensus       937 ~~~~~~v~~~~~spdg~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~--l~s~s~Dg~I~vwd~~ 1013 (1102)
                                  ..++..++. ..++.+.+||..+++.+..+.   +...+.+++|||||+.  +++++.|++|+|||+.
T Consensus       285 ------------~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         285 ------------TSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             ------------cCCCceEEeecCCCeEEEEECCCCcEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence                        222333444 577899999999999988774   4667999999999984  4688899999999999


Q ss_pred             CceeEEEeC
Q 001311         1014 NLKLRCRIN 1022 (1102)
Q Consensus      1014 ~~~~~~~~~ 1022 (1102)
                      +++.+.++.
T Consensus       350 tg~~~~~~~  358 (373)
T d2madh_         350 AGDQDQSTV  358 (373)
T ss_pred             CCCEEEEEC
Confidence            999999887

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.9e-16  Score=173.18  Aligned_cols=210  Identities=10%  Similarity=0.120  Sum_probs=137.0

Q ss_pred             CeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceee--eecCCCCCeeEEEEecCCCcEEEEEe-CCCcEEEEEeeccee
Q 001311          808 AVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMA--TFMPPPPAATFLAFHPQDNNIIAIGM-DDSSIQIYNVRVDEV  882 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~--~~~~~~~~i~~l~~sp~d~~~lasg~-~dg~v~vwd~~~~~~  882 (1102)
                      .+..++|+|||++|++++  ++.|.+|+........  ....+...+.++.|+| +++++++++ .+..|.+|+......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~-d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeee-cceeeeccccccceeeEEEeccCCc
Confidence            345678888888777776  5678888776554433  2345667788999999 787777766 445799999876432


Q ss_pred             eee------eccccccceeEEEecCCCEEEEEc-CCCcEEEEEcCCCcccce--eeeecCCCCCCCCCCCcEEEEccCCc
Q 001311          883 KSK------LKGHSKRITGLAFSHALNVLVSSG-ADSQLCVWSSDGWEKQKN--RFLQIPTGRTPTAQSDTRVQFHQDQI  953 (1102)
Q Consensus       883 ~~~------l~~h~~~V~~l~~s~d~~~l~s~s-~Dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~spdg~  953 (1102)
                      ...      ...+......++|++++.+++... ..+...+|++........  ..................+++++|++
T Consensus       163 ~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  242 (333)
T d1ri6a_         163 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGR  242 (333)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSS
T ss_pred             ceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccC
Confidence            211      122334557899999998877554 556788888765332211  11222222222223456789999999


Q ss_pred             EEEEE--eCCeEEEEEcCCceEeeeec-cCCCCCCeeEEEEcCCCcEEEEEeC-CCeEEEE--EcCCceeE
Q 001311          954 HFLVV--HETQLAIFETTKLECVKQWV-PRESSAPITHATFSCDSQLVYACFL-DATVCVF--SAANLKLR 1018 (1102)
Q Consensus       954 ~l~~~--~d~~i~iwd~~~~~~~~~~~-~~~h~~~v~~l~~spd~~~l~s~s~-Dg~I~vw--d~~~~~~~ 1018 (1102)
                      ++++.  .++.+.+|++.......... ...+...+.+++|||||++|++++. ++.|+||  |.++|++.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~tG~l~  313 (333)
T d1ri6a_         243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH  313 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred             ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence            88874  57789999887654332221 1123567889999999999877654 5899999  45677653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=9.3e-17  Score=177.50  Aligned_cols=200  Identities=10%  Similarity=0.000  Sum_probs=127.5

Q ss_pred             eEEEEEccCCCeEEEEE-----CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEE--------ecCCC
Q 001311          411 VNRVIWSPDGSLFGVAY-----SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVIT--------CGDDK  477 (1102)
Q Consensus       411 V~~l~~spdg~~las~~-----~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s--------~~~d~  477 (1102)
                      +.-.+.+|||+++++..     .+..|.+||..+++.+..   +..+.  +..++|+|||+.+++++        ++.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~---~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~   78 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM---IDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTD   78 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE---EEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE---EECCC--CCceEEcCCCCEEEEEeCCCccccccCCCC
Confidence            34446789999998764     456799999999987663   44343  44799999999643332        34578


Q ss_pred             cEEEEeCCCCeeeEEeecCCCC-------eEEEeeeecCCccEEEEE--eCCCeEEEEEcCCCCCeeeecCCCCeeeEEE
Q 001311          478 TIKVWDATNGAKQYIFEGHEAP-------VYSVCPHHKENIQFIFST--ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMA  548 (1102)
Q Consensus       478 ~i~vWd~~~~~~~~~~~~h~~~-------v~~v~~~~~~~~~~l~s~--s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~  548 (1102)
                      .|++||+.+++.+..+..+...       ...++|  ++++.+++.+  +.+..+.+|+..+.+....+..+.....   
T Consensus        79 ~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~--s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  153 (355)
T d2bbkh_          79 YVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI---  153 (355)
T ss_dssp             EEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE---
T ss_pred             EEEEEECCCCCEEEEEecCCcceeecCCCCceEEE--ecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE---
Confidence            9999999999998887654432       233455  4556666655  4567899999988766555443321110   


Q ss_pred             EccCCceeeeccccCceeEEEEcCCCCEEEEE-eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC
Q 001311          549 YSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND  627 (1102)
Q Consensus       549 ~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d  627 (1102)
                       .+          ......+.+++++..++.. ..++.+.+++......       .....+....+.+++..++.++.+
T Consensus       154 -~~----------~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  215 (355)
T d2bbkh_         154 -FP----------TAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------EDEFLINHPAYSQKAGRLVWPTYT  215 (355)
T ss_dssp             -EE----------EETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------TTSCBCSCCEEETTTTEEEEEBTT
T ss_pred             -ee----------cCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------eecceeeeccccCCCCeEEEecCC
Confidence             00          0122234444554444433 2344445554433221       122345667888888899999999


Q ss_pred             CcEEEEEccCC
Q 001311          628 NGIKILATSDG  638 (1102)
Q Consensus       628 g~i~iwd~~~~  638 (1102)
                      +.+++|+...+
T Consensus       216 ~~~~v~~~~~~  226 (355)
T d2bbkh_         216 GKIHQIDLSSG  226 (355)
T ss_dssp             SEEEEEECTTS
T ss_pred             CeEEEEecCCC
Confidence            99999998766

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=4.9e-16  Score=169.74  Aligned_cols=282  Identities=12%  Similarity=0.181  Sum_probs=186.9

Q ss_pred             EEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEE
Q 001311          754 ILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISL  831 (1102)
Q Consensus       754 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~i  831 (1102)
                      +++++.++.|++|+++..                     +.+.....  ..+...+..++|+|||++|+++.  |+.|++
T Consensus         7 ~v~~~~~~~I~v~~~~~~---------------------~~l~~~~~--~~~~~~v~~la~spDG~~L~v~~~~d~~i~~   63 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHE---------------------GALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA   63 (333)
T ss_dssp             EEEEGGGTEEEEEEECTT---------------------SCEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred             EEECCCCCcEEEEEEcCC---------------------CCeEEEEE--EcCCCCEeEEEEeCCCCEEEEEECCCCeEEE
Confidence            466778899999997421                     11100000  12677899999999999996665  799999


Q ss_pred             EEcCCCceeeee---cCCCCCeeEEEEecCCCcEEEEEeC-CCcEEEEEeecceeeee--eccccccceeEEEecCCCEE
Q 001311          832 FNMMTFKTMATF---MPPPPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRVDEVKSK--LKGHSKRITGLAFSHALNVL  905 (1102)
Q Consensus       832 wd~~~~~~~~~~---~~~~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~~~~~~~--l~~h~~~V~~l~~s~d~~~l  905 (1102)
                      |++.......++   ..+...+..++|+| ||++|++++. ++.|.+|+.........  ...+...+.++.|+||++++
T Consensus        64 ~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~  142 (333)
T d1ri6a_          64 YRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL  142 (333)
T ss_dssp             EEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred             EEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence            999765443332   22445678899999 8998888874 67899999887654333  34566778899999999988


Q ss_pred             EEEcC-CCcEEEEEcCCCcccceee---eecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce----Eee
Q 001311          906 VSSGA-DSQLCVWSSDGWEKQKNRF---LQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE----CVK  975 (1102)
Q Consensus       906 ~s~s~-Dg~i~vwd~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~----~~~  975 (1102)
                      ++++. +..|.+|+...........   .....+     .....++|++++.+++..  ..+...+|+.....    ...
T Consensus       143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g-----~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  217 (333)
T d1ri6a_         143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG-----AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ  217 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT-----CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE
T ss_pred             eccccccceeeEEEeccCCcceeeeceeeeeecC-----CCccEEEEeccceeEEeeccccCceEEEeecccccceeeee
Confidence            87764 4569999987654332221   122222     245789999999998874  45677788764322    111


Q ss_pred             eec----cCCCCCCeeEEEEcCCCcEEEEE-eCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCE
Q 001311          976 QWV----PRESSAPITHATFSCDSQLVYAC-FLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNE 1050 (1102)
Q Consensus       976 ~~~----~~~h~~~v~~l~~spd~~~l~s~-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~ 1050 (1102)
                      ...    ..........+++++|+++++.+ ..++.+.+|++........+.  ...+.+     ..+..++|+| ||++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~p~~~a~sp-DGk~  289 (333)
T d1ri6a_         218 TLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE--GFQPTE-----TQPRGFNVDH-SGKY  289 (333)
T ss_dssp             EEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE--EEEECS-----SSCCCEEECT-TSSE
T ss_pred             eeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEE--EEeCCC-----CCeeEEEEeC-CCCE
Confidence            111    11224567788999999976654 567899999987654333322  011111     2344799999 6787


Q ss_pred             EEEE-ecCCcEEEEeccCCCccc
Q 001311         1051 FALG-LSDGGVHVFEPLESEGKW 1072 (1102)
Q Consensus      1051 l~s~-~~Dg~v~vW~~~~~~~~~ 1072 (1102)
                      |+++ ..++.|.+|++....+.+
T Consensus       290 l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         290 LIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEECTTTCEEEEEEEETTTTEE
T ss_pred             EEEEECCCCeEEEEEEECCCCcE
Confidence            6655 456899999886554444

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=1.1e-13  Score=158.95  Aligned_cols=152  Identities=15%  Similarity=0.136  Sum_probs=111.9

Q ss_pred             EEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC--
Q 001311          351 SMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS--  428 (1102)
Q Consensus       351 ~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~--  428 (1102)
                      .+.|.+|+++ +..  .|+.|.+||+.+++....              +....+..|...|.++.|||||++||.++.  
T Consensus        21 ~~~W~~d~~~-~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          21 SLRWISDHEY-LYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCEECSSSEE-EEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             CCEeCCCCEE-EEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            4779999985 553  478999999999987542              122246778889999999999999998854  


Q ss_pred             -------CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCC----
Q 001311          429 -------RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHE----  497 (1102)
Q Consensus       429 -------d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~----  497 (1102)
                             ++.+.|||+++++...    +..|.+.+..+.|||||+  .++.. .++.+.+|+..+++..+....+.    
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~~----l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~  156 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             ceeeeccCceEEEEECCCCcccc----cccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence                   5678999999987443    778999999999999999  45554 46789999999988766443221    


Q ss_pred             --------------CCeEEEeeeecCCccEEEEEeCCCe-EEEEEc
Q 001311          498 --------------APVYSVCPHHKENIQFIFSTALDGK-IKAWLY  528 (1102)
Q Consensus       498 --------------~~v~~v~~~~~~~~~~l~s~s~dg~-i~~wd~  528 (1102)
                                    +....+.|  ++||+.|+....|.+ +..|.+
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEE
T ss_pred             cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEE
Confidence                          22233445  567788888776543 554443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.52  E-value=2.2e-13  Score=150.72  Aligned_cols=241  Identities=10%  Similarity=0.002  Sum_probs=160.9

Q ss_pred             eEEEEecCCCeEEEEe-----------CCeEEEEEcCCCceeeeecCCCC-------CeeEEEEecCCCcEEEEEe-CCC
Q 001311          810 PCFALSKNDSYVMSAS-----------GGKISLFNMMTFKTMATFMPPPP-------AATFLAFHPQDNNIIAIGM-DDS  870 (1102)
Q Consensus       810 ~~l~~s~d~~~las~s-----------dg~I~iwd~~~~~~~~~~~~~~~-------~i~~l~~sp~d~~~lasg~-~dg  870 (1102)
                      ..++++|||++|++.+           |+.|++||..+++.+..+..+..       ....++|+| ||++|+++. .++
T Consensus        68 ~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~Sp-DGk~l~va~~~~~  146 (368)
T d1mdah_          68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCA-SSACLLFFLFGSS  146 (368)
T ss_dssp             CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECT-TSSCEEEEECSSS
T ss_pred             CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECC-CCCEEEEEeCCCC
Confidence            3689999999998754           46699999999998887754332       234689999 888887775 579


Q ss_pred             cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEcc
Q 001311          871 SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQ  950 (1102)
Q Consensus       871 ~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp  950 (1102)
                      .+.+||+.+++....+..+.....   +......++..+.||++.+|++............  .........+..+.+.+
T Consensus       147 ~v~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  221 (368)
T d1mdah_         147 AAAGLSVPGASDDQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGA--QCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             CEEEEEETTTEEEEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSSCCCCEECCC--CSCTTSCBCSCCEEETT
T ss_pred             eEEEEECCCCcEeEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCCceeeeeeec--ccccccccceeeccccc
Confidence            999999999998888766544321   1123456666777888888877654432221111  11111113456778888


Q ss_pred             CCcEEEEEeCCeEEEEEcCCceEeeeeccCCC----------CCCeeEEEEcCCCcEEEEEeCC---------CeEEEEE
Q 001311          951 DQIHFLVVHETQLAIFETTKLECVKQWVPRES----------SAPITHATFSCDSQLVYACFLD---------ATVCVFS 1011 (1102)
Q Consensus       951 dg~~l~~~~d~~i~iwd~~~~~~~~~~~~~~h----------~~~v~~l~~spd~~~l~s~s~D---------g~I~vwd 1011 (1102)
                      ++..+.. ..+.+++++...+..........+          ......+++++++..++....+         ..|.+||
T Consensus       222 ~g~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D  300 (368)
T d1mdah_         222 PGMLVWA-VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             TTEEEEC-BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             CcEEEEe-cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence            8776544 445666777665544332221111          1223458899999887665433         3599999


Q ss_pred             cCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC--EEEEEecCCcEEEEeccCCC
Q 001311         1012 AANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN--EFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1012 ~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~--~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      ..+++.+.++.    .  +     -.+.+++|+| |++  +++++..|+.|+|||..+++
T Consensus       301 ~~t~~~~~~~~----~--~-----~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk  348 (368)
T d1mdah_         301 ASVGQTSGPIS----N--G-----HDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQ  348 (368)
T ss_dssp             SSSCCEEECCE----E--E-----EEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCE
T ss_pred             CCCCcEeEEec----C--C-----CceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCC
Confidence            99999887665    1  1     1233799999 565  35677889999999999988

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=1.3e-14  Score=158.09  Aligned_cols=350  Identities=13%  Similarity=0.083  Sum_probs=208.5

Q ss_pred             CCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEE
Q 001311          357 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS  436 (1102)
Q Consensus       357 dg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd  436 (1102)
                      |+-|.+++|+.+|.|+||++.+++.+...                        +    .|+|++.. +.|..+.+.+++.
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~I------------------------p----Vfspd~~~-g~g~~~es~~vl~   59 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMRI------------------------P----VFNVDSAT-GWGITNESKEILG   59 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEEE------------------------C----SSSBCTTT-CTTTSHHHHHHHC
T ss_pred             CCEEEEEeCCCCCcEEEEeCCCCcEEEEE------------------------E----eEcCCCCE-EEEECCccceEEe
Confidence            34567889999999999999999888641                        1    26777654 2222222222211


Q ss_pred             ccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee-cCCCCeEEEeeeecCCccEEE
Q 001311          437 YHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPVYSVCPHHKENIQFIF  515 (1102)
Q Consensus       437 ~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~  515 (1102)
                        ++....   ....|........++|||++ ++++...+..|.++|+.++++...+. .+...+..++|+++++..+++
T Consensus        60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred             --cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence              111111   12235556677778899996 45777788999999999999988765 356778888986655444555


Q ss_pred             EEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcc
Q 001311          516 STALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQ  595 (1102)
Q Consensus       516 s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  595 (1102)
                      ..+.+..-...|                         +... ..             + ...      ..+..+|..+.+
T Consensus       134 ~~~~~~v~~~~d-------------------------g~~~-~~-------------~-~~~------~~~~~iD~~t~~  167 (441)
T d1qnia2         134 CNAEFVIPQPND-------------------------GTDF-SL-------------D-NSY------TMFTAIDAETMD  167 (441)
T ss_dssp             EEECSCEESSCS-------------------------SSCC-CG-------------G-GEE------EEEEEEETTTCS
T ss_pred             eccCCcccccCc-------------------------cccc-cc-------------c-ccc------ceEEeecCccce
Confidence            555432221111                         1000 00             0 001      245667888888


Q ss_pred             eEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCc-EEEEEccCCccceeecccccccccccCCCCCCCcccchhhhHhhh
Q 001311          596 LLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNG-IKILATSDGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAA  674 (1102)
Q Consensus       596 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  674 (1102)
                      ....+...+.   ...+.++|+|+++++.+.+.. +..++..+. ...                                
T Consensus       168 v~~qI~v~~~---p~~v~~spdGk~a~vt~~nse~~~~id~~t~-~~~--------------------------------  211 (441)
T d1qnia2         168 VAWQVIVDGN---LDNTDADYTGKYATSTCYNSERAVDLAGTMR-NDR--------------------------------  211 (441)
T ss_dssp             EEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTC-SSB--------------------------------
T ss_pred             eeEEEecCCC---ccceEECCCCCEEEEEecCCCceEEEeccCc-ceE--------------------------------
Confidence            7777765543   677999999999998876532 222221111 000                                


Q ss_pred             hccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccccceEEEEEccCCceE
Q 001311          675 TSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRATKISRLIFTNSGNAI  754 (1102)
Q Consensus       675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  754 (1102)
                                                           ..+.+.+..                      ..+.++++|+++
T Consensus       212 -------------------------------------d~i~v~n~p----------------------~~~~~~~dGk~~  232 (441)
T d1qnia2         212 -------------------------------------DWVVVFNVE----------------------RIAAAVKAGNFK  232 (441)
T ss_dssp             -------------------------------------CEEEEEEHH----------------------HHHHHHHTTCCB
T ss_pred             -------------------------------------EEEEeCCcc----------------------ceEEEecCCCEE
Confidence                                                 011111110                      112345566644


Q ss_pred             EEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe--CCeEEEE
Q 001311          755 LALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS--GGKISLF  832 (1102)
Q Consensus       755 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s--dg~I~iw  832 (1102)
                      .. +.++.+.++..                      ....++.. +.   -......+.++|||+++++++  +++|.+|
T Consensus       233 ~v-~~~~v~vvd~~----------------------~~~~v~~~-IP---vgksPhGv~vSPDGkyl~~~~~~~~tvsv~  285 (441)
T d1qnia2         233 TI-GDSKVPVVDGR----------------------GESEFTRY-IP---VPKNPHGLNTSPDGKYFIANGKLSPTVSVI  285 (441)
T ss_dssp             CC-TTCCCCEEECS----------------------SSCSSEEE-EC---CBSSCCCEEECTTSCEEEEECTTSSBEEEE
T ss_pred             Ee-CCCCcEEEEcc----------------------cCCceEEE-Ee---CCCCccCceECCCCCEEEEeCCcCCcEEEE
Confidence            33 33444444432                      11111111 11   123356799999999987765  8999999


Q ss_pred             EcCCCcee--------eeecCC---CCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecc----------eeeeee-----
Q 001311          833 NMMTFKTM--------ATFMPP---PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVD----------EVKSKL-----  886 (1102)
Q Consensus       833 d~~~~~~~--------~~~~~~---~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~----------~~~~~l-----  886 (1102)
                      |+.+....        ..+.++   .-.....+|++ +|+.+.+...|.+|..|++...          ..+..+     
T Consensus       286 d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~-~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~  364 (441)
T d1qnia2         286 AIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDG-RGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQ  364 (441)
T ss_dssp             EGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC
T ss_pred             EeehhhhHhhccCCcceEEEeecccccCcccceecC-CceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccC
Confidence            98753221        111111   12345578999 8999999999999999998521          233333     


Q ss_pred             ccccccceeEEEecCCCEEEEEcC
Q 001311          887 KGHSKRITGLAFSHALNVLVSSGA  910 (1102)
Q Consensus       887 ~~h~~~V~~l~~s~d~~~l~s~s~  910 (1102)
                      .||...+.+.+|+|||+||++++.
T Consensus       365 ~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         365 PGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             EEEEEETTTTSTTCCCCEEEEEES
T ss_pred             CCCCccccccccCCCCcEEEecCc
Confidence            589889999999999999999954

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=4.3e-13  Score=148.23  Aligned_cols=268  Identities=11%  Similarity=-0.005  Sum_probs=174.3

Q ss_pred             CCCCeeEEEEecCCCeEE--EEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCC
Q 001311          345 QGSSPMSMDFHPVQQTLL--LVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDG  420 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~ll--asg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg  420 (1102)
                      +.+....++.++|++...  +....++  .|.+||..+++.+..                   ..++...  .++|+|||
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg   76 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG   76 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence            445556667788888533  3344445  477779999988764                   2333333  58999999


Q ss_pred             CeEEEEE----------CCCeEEEEEccCCceeeeEEEeeccc-------cCEEEEEEcCCCCeeEEEEecCCCcEEEEe
Q 001311          421 SLFGVAY----------SRHIVQIYSYHGGDEVRQHLEIDAHV-------GGVNDIAFSHPNKQLCVITCGDDKTIKVWD  483 (1102)
Q Consensus       421 ~~las~~----------~d~~v~vwd~~~~~~~~~~~~l~~h~-------~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd  483 (1102)
                      ++|++.+          .|+.|.+||..+++.+..   +..+.       .....++|+|||+. ++++...++.+.+||
T Consensus        77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d  152 (368)
T d1mdah_          77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLS  152 (368)
T ss_dssp             SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEE
T ss_pred             CEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEE
Confidence            9999865          367899999999887654   22222       12346899999996 334445689999999


Q ss_pred             CCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeee------cCCCCeeeEEEEccCCceee
Q 001311          484 ATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDY------EAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       484 ~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~------~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      +.+++.+..+..+......    +... ..++..+.||.+.+|++.........      ..+...+....+.+++..++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~----~~~~-~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (368)
T d1mdah_         153 VPGASDDQLTKSASCFHIH----PGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW  227 (368)
T ss_dssp             ETTTEEEEEEECSSCCCCE----EEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred             CCCCcEeEEeeccCcceEc----cCCC-ceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence            9999999988766544321    2222 46777888899988888765443221      11111222233333332111


Q ss_pred             ec-------------------------------cccCceeEEEEcCCCCEEEEEeC---------CCeEEEEECCCcceE
Q 001311          558 QG-------------------------------FRKRSLGVVQFDTTKNRFLAAGD---------DFSIKFWDMDSVQLL  597 (1102)
Q Consensus       558 ~~-------------------------------~~~~~i~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~  597 (1102)
                      ..                               ........+++++++..++....         ...|.+||..+++.+
T Consensus       228 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~  307 (368)
T d1mdah_         228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTS  307 (368)
T ss_dssp             CBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEE
T ss_pred             ecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEe
Confidence            10                               00011234678888887766432         235999999999988


Q ss_pred             EEEcCCCCCCCcCeEEEcCCCCE--EEEEECCCcEEEEEccCCccceeecc
Q 001311          598 TSIDADGGLPASPRIRFNKDGCL--LAVSTNDNGIKILATSDGIRLLRTFE  646 (1102)
Q Consensus       598 ~~~~~~~~~~~v~~~~~s~~~~~--l~~~~~dg~i~iwd~~~~~~~~~~~~  646 (1102)
                      ..+....   .+.+++|+|||+.  ++++..++.|++||..++ +.+..+.
T Consensus       308 ~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i~  354 (368)
T d1mdah_         308 GPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSVE  354 (368)
T ss_dssp             ECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEECC
T ss_pred             EEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEEE
Confidence            7776432   4788999999973  355567899999999999 5565554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.51  E-value=4.8e-12  Score=144.91  Aligned_cols=150  Identities=11%  Similarity=0.106  Sum_probs=104.0

Q ss_pred             EEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeec-----CCCCeEEEeeeecCCccEEEEEeC---------CCe
Q 001311          457 NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEG-----HEAPVYSVCPHHKENIQFIFSTAL---------DGK  522 (1102)
Q Consensus       457 ~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~-----h~~~v~~v~~~~~~~~~~l~s~s~---------dg~  522 (1102)
                      ..+.|.+|+.  ++..  .|+.+.+||+.+++....+..     |...|.++.|  ++||++|+.++.         ++.
T Consensus        20 ~~~~W~~d~~--~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~--SpDg~~i~~~~~~~~~~r~s~~~~   93 (470)
T d2bgra1          20 YSLRWISDHE--YLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSI--SPDGQFILLEYNYVKQWRHSYTAS   93 (470)
T ss_dssp             CCCEECSSSE--EEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEE
T ss_pred             cCCEeCCCCE--EEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEE--CCCCCEEEEEECCcceeeeccCce
Confidence            3578999997  5543  477899999999998765544     4577888887  567788888753         567


Q ss_pred             EEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcC
Q 001311          523 IKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDA  602 (1102)
Q Consensus       523 i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  602 (1102)
                      +.+||+.+++ ...+..+...+....|+|||+                     .++.. .++.+++|+..+++.......
T Consensus        94 ~~l~d~~~~~-~~~l~~~~~~~~~~~~SPDG~---------------------~ia~~-~~~~l~~~~~~~g~~~~~t~~  150 (470)
T d2bgra1          94 YDIYDLNKRQ-LITEERIPNNTQWVTWSPVGH---------------------KLAYV-WNNDIYVKIEPNLPSYRITWT  150 (470)
T ss_dssp             EEEEETTTTE-ECCSSCCCTTEEEEEECSSTT---------------------CEEEE-ETTEEEEESSTTSCCEECCSC
T ss_pred             EEEEECCCCc-ccccccCCccccccccccCcc---------------------eeeEe-ecccceEEECCCCceeeeeec
Confidence            8899998754 444555555566666666665                     45554 467899999998876654432


Q ss_pred             CC----------------CCCCcCeEEEcCCCCEEEEEECCCc-EEEEEc
Q 001311          603 DG----------------GLPASPRIRFNKDGCLLAVSTNDNG-IKILAT  635 (1102)
Q Consensus       603 ~~----------------~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~  635 (1102)
                      ..                .......+.|||||++|+....|.+ +..|.+
T Consensus       151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             cCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            11                1123456889999999999876544 555543

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.40  E-value=1.2e-11  Score=134.41  Aligned_cols=259  Identities=14%  Similarity=0.114  Sum_probs=170.4

Q ss_pred             CCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCc--EEEEEeCCC---------
Q 001311          805 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNN--IIAIGMDDS---------  870 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~--~lasg~~dg---------  870 (1102)
                      |.-.......+|||++|.+..  ++.|.++|+.+++....+. .+...+..++|+| +++  |++..+++.         
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~sp-dg~t~YV~~~~~~~v~~~~dg~~  148 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQK-VPKTNYVFCNAEFVIPQPNDGTD  148 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECC-SSBCCEEEEEECSCEESSCSSSC
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEec-cCCEEEEEeccCCcccccCcccc
Confidence            444556666789999998876  6899999999999887764 3567899999999 776  444444332         


Q ss_pred             --------cEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC------------------------------
Q 001311          871 --------SIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS------------------------------  912 (1102)
Q Consensus       871 --------~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg------------------------------  912 (1102)
                              .+..+|..+.+...++... +....++|+|||+++++.+.+.                              
T Consensus       149 ~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~  227 (441)
T d1qnia2         149 FSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVK  227 (441)
T ss_dssp             CCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHH
T ss_pred             cccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEec
Confidence                    2345777776666665533 3578899999999998776542                              


Q ss_pred             -----------cEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceEe-----
Q 001311          913 -----------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECV-----  974 (1102)
Q Consensus       913 -----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~~-----  974 (1102)
                                 .+.|++....+.    ...++.+     .....+.++|||++++++  .+++|.+||+.+....     
T Consensus       228 dGk~~~v~~~~v~vvd~~~~~~v----~~~IPvg-----ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~  298 (441)
T d1qnia2         228 AGNFKTIGDSKVPVVDGRGESEF----TRYIPVP-----KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKI  298 (441)
T ss_dssp             TTCCBCCTTCCCCEEECSSSCSS----EEEECCB-----SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSS
T ss_pred             CCCEEEeCCCCcEEEEcccCCce----EEEEeCC-----CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccC
Confidence                       233333222111    1112222     245789999999999885  7899999998764321     


Q ss_pred             ---eeecc-CCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCC----------ceeEEEeCCCcccCCCCCCCcccceE
Q 001311          975 ---KQWVP-RESSAPITHATFSCDSQLVYACFLDATVCVFSAAN----------LKLRCRINPSAYLPAGVSSSNVHPLV 1040 (1102)
Q Consensus       975 ---~~~~~-~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~----------~~~~~~~~~~~~~~~gh~~~~v~~~~ 1040 (1102)
                         ..+.. ....-.....+|+++|..+.+...|..|..|++..          ...+.++..+ |.+ ||...   +++
T Consensus       299 ~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~-y~~-GH~~~---~~~  373 (441)
T d1qnia2         299 ELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ-YQP-GHNHA---SLT  373 (441)
T ss_dssp             CGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-SCE-EEEEE---TTT
T ss_pred             CcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc-cCC-CCCcc---ccc
Confidence               00000 01123356678999999999999999999999752          1244444422 333 33222   447


Q ss_pred             EEecCCCCCEEEEE---ecCC----------cEEEEeccCCCcccccCCCCCC
Q 001311         1041 IAAHPQEPNEFALG---LSDG----------GVHVFEPLESEGKWGVPPPVDN 1080 (1102)
Q Consensus      1041 v~f~p~d~~~l~s~---~~Dg----------~v~vW~~~~~~~~~~~~~~~~~ 1080 (1102)
                      .+|+| ||++|+++   +.|+          +-.+.|++..++++-..-|-.+
T Consensus       374 ~t~~p-dGk~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~~~~~~~~~~~~~~  425 (441)
T d1qnia2         374 ESRDA-DGKWLVVLSKFSKDRFLPVGPLHPENDQLIDISGEEMKLVHDGPTYA  425 (441)
T ss_dssp             TSTTC-CCCEEEEEESCCGGGSCCCSSSCCEEEEEEECSSSSCEEEEEEEESS
T ss_pred             cccCC-CCcEEEecCccccccCcCCCCCCCccceeEEecCCeEEEEecCCCCC
Confidence            88999 79999999   6665          4567888766655544444333

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.25  E-value=6.7e-10  Score=121.11  Aligned_cols=255  Identities=9%  Similarity=0.061  Sum_probs=151.8

Q ss_pred             CCCCeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeee--cCCCCCeeEEEEecCCCcEE--EEEe-CCCcEEEEEeec
Q 001311          805 PEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATF--MPPPPAATFLAFHPQDNNII--AIGM-DDSSIQIYNVRV  879 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~--~~~~~~i~~l~~sp~d~~~l--asg~-~dg~v~vwd~~~  879 (1102)
                      ....+..|++++++++|.++..+.+..|.+.....+...  .........+++++ +++.+  +++. ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence            345567899999999999888778888877643222221  11234566788888 77643  3322 245666555422


Q ss_pred             c-eee------------ee----eccccccceeEEEecCCCEEEEEcC-CCcEEEEEcCCCcc-cceeeeecCCCCCCCC
Q 001311          880 D-EVK------------SK----LKGHSKRITGLAFSHALNVLVSSGA-DSQLCVWSSDGWEK-QKNRFLQIPTGRTPTA  940 (1102)
Q Consensus       880 ~-~~~------------~~----l~~h~~~V~~l~~s~d~~~l~s~s~-Dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~  940 (1102)
                      . ...            ..    -......+.+++|+|||++|++++. ...|.+|++..... ...........    .
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g  192 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence            1 000            00    0111223678999999998887754 44688887654322 11111111111    1


Q ss_pred             CCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceEeee-----ecc------------CCCCCCeeEEEEcCCCcEEEEE
Q 001311          941 QSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQ-----WVP------------RESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus       941 ~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~~~~-----~~~------------~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
                      .....++|+|+|+++.+.  .+++|.+|+.........     ...            ..+......+.++|||++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            356899999999999885  578999999876542211     110            0112345678999999999877


Q ss_pred             eC------CCeEEEEEcCCceeEEE-eCCCcccCCCCCCCcccceEEEecCCCCCEEEEE-ecCCcEEEEeccCCC
Q 001311         1002 FL------DATVCVFSAANLKLRCR-INPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALG-LSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1002 s~------Dg~I~vwd~~~~~~~~~-~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~-~~Dg~v~vW~~~~~~ 1069 (1102)
                      ..      .+.|..|++.....+.+ .........|     .++..++++|.+|++|+++ ..++.|.+|++....
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G-----~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSG-----GHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCC-----TTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEEcCC-----CCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            53      23477888765332221 1111111122     3455799998677866555 677999999986654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.17  E-value=1.1e-08  Score=108.14  Aligned_cols=246  Identities=14%  Similarity=0.101  Sum_probs=163.1

Q ss_pred             CCccceeeccCCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEE
Q 001311          335 LPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRV  414 (1102)
Q Consensus       335 ~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l  414 (1102)
                      .+.++...+.-...+..++++|||+ |+++...+++|..|+.......                     +......+.++
T Consensus        16 ~~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gl   73 (302)
T d2p4oa1          16 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGL   73 (302)
T ss_dssp             CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEE
T ss_pred             CcccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceE
Confidence            3455555565556789999999999 6889888999999996643222                     23345679999


Q ss_pred             EEccCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee
Q 001311          415 IWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE  494 (1102)
Q Consensus       415 ~~spdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~  494 (1102)
                      +|++||+++++...++.+.+|+......................+++.+++.  ++++.+.++.+..+|..++.......
T Consensus        74 a~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~  151 (302)
T d2p4oa1          74 AFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLE  151 (302)
T ss_dssp             EECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEec
Confidence            9999999999998889898888765443222211223456688999999998  78888888999999988776443222


Q ss_pred             c--------C--CCCeEEEeeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311          495 G--------H--EAPVYSVCPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  564 (1102)
Q Consensus       495 ~--------h--~~~v~~v~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  564 (1102)
                      .        +  ......+.+  +.+ .++++.+..+.|..++...........     +            +.  ....
T Consensus       152 ~~~~~~~~~~~~~~~~ngi~~--~~~-~l~~~~~~~~~i~~~~~~~~~~~~~~~-----~------------~~--~~~~  209 (302)
T d2p4oa1         152 HPMLARSNSESVFPAANGLKR--FGN-FLYVSNTEKMLLLRIPVDSTDKPGEPE-----I------------FV--EQTN  209 (302)
T ss_dssp             CGGGSCSSTTCCSCSEEEEEE--ETT-EEEEEETTTTEEEEEEBCTTSCBCCCE-----E------------EE--ESCC
T ss_pred             CCccceeeccCcccccccccc--cCC-ceeeecCCCCeEEeccccccccccccc-----c------------cc--CCCC
Confidence            1        1  122344443  333 566777778888888776543321100     0            00  0112


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEE---cCCCCEEEEEECC
Q 001311          565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRF---NKDGCLLAVSTND  627 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~---s~~~~~l~~~~~d  627 (1102)
                      ...++++++|+++++...++.|..++.. ++..............++++|   ++|++.|++++..
T Consensus       210 pdgia~d~dG~l~va~~~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         210 IDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CcceEECCCCCEEEEEcCCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            3347777788877777788999999875 443333333333345778999   6788888877654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.13  E-value=5.2e-08  Score=105.71  Aligned_cols=169  Identities=8%  Similarity=-0.003  Sum_probs=105.4

Q ss_pred             CCCeeEEEEecCCCcEEEEEeC-CCcEEEEEeec-ceee--eee--ccccccceeEEEecCCCEEEE-EcCCCcEEEEEc
Q 001311          847 PPAATFLAFHPQDNNIIAIGMD-DSSIQIYNVRV-DEVK--SKL--KGHSKRITGLAFSHALNVLVS-SGADSQLCVWSS  919 (1102)
Q Consensus       847 ~~~i~~l~~sp~d~~~lasg~~-dg~v~vwd~~~-~~~~--~~l--~~h~~~V~~l~~s~d~~~l~s-~s~Dg~i~vwd~  919 (1102)
                      ...+.+++|+| |++++++++. ...|.+|+... ++..  ...  .........++|+||++++.+ .-.+++|.+|++
T Consensus       144 ~~h~h~v~~sP-dG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~  222 (365)
T d1jofa_         144 NTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVI  222 (365)
T ss_dssp             TCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCcceEEEECC-CCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEe
Confidence            34578999999 8887777753 34788887654 2221  111  123455788999999998855 456789999999


Q ss_pred             CCCcccceeeee---cCCCCC--------CCCCCCcEEEEccCCcEEEEE--eCC-----eEEEEEcCCceEee-e---e
Q 001311          920 DGWEKQKNRFLQ---IPTGRT--------PTAQSDTRVQFHQDQIHFLVV--HET-----QLAIFETTKLECVK-Q---W  977 (1102)
Q Consensus       920 ~~~~~~~~~~~~---~~~~~~--------~~~~~v~~~~~spdg~~l~~~--~d~-----~i~iwd~~~~~~~~-~---~  977 (1102)
                      +...........   ......        ........+.++|||++|+++  .+.     .|..|++.....+. .   .
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~  302 (365)
T d1jofa_         223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLS  302 (365)
T ss_dssp             CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEE
T ss_pred             cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEee
Confidence            875433222111   111000        001123578999999999885  332     37778775432211 1   1


Q ss_pred             ccCCCCCCeeEEEEcC-CCcEEEEEe-CCCeEEEEEcCCce
Q 001311          978 VPRESSAPITHATFSC-DSQLVYACF-LDATVCVFSAANLK 1016 (1102)
Q Consensus       978 ~~~~h~~~v~~l~~sp-d~~~l~s~s-~Dg~I~vwd~~~~~ 1016 (1102)
                      ...........++|+| +|++|+++. .++.|.||+++...
T Consensus       303 ~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         303 PTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             ECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             EEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            1112345678899998 899887765 66899999876553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.99  E-value=3.7e-08  Score=104.02  Aligned_cols=236  Identities=9%  Similarity=0.024  Sum_probs=151.0

Q ss_pred             CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee-ee
Q 001311          807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV-KS  884 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~-~~  884 (1102)
                      ..+..++++|||+++++.. +++|+.|+... + ...+......+.+++|++ +++++++...++.+.+|+...... ..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence            3588999999999988877 88898888654 3 333444567899999999 899999998899999988765321 12


Q ss_pred             ee--ccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeec--CCCCCCCCCCCcEEEEccCCcEEEE--E
Q 001311          885 KL--KGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQI--PTGRTPTAQSDTRVQFHQDQIHFLV--V  958 (1102)
Q Consensus       885 ~l--~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~spdg~~l~~--~  958 (1102)
                      .+  .........+++.++++++++.+.++.+..++..++..........  .............+.++  +..+..  .
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence            22  1234557889999999999999989989888887754321111100  00011111122344444  444444  3


Q ss_pred             eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccc
Q 001311          959 HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHP 1038 (1102)
Q Consensus       959 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~ 1038 (1102)
                      ..+.|+.++..............+......++|++||+++++...++.|..++.+. +......    ..    .....+
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~----~~----~~~~~p  253 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQ----AE----QGVIGS  253 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEEC----GG----GTCTTE
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEe----cC----CCCCCc
Confidence            67788888876654332221111234567899999999888888899999997654 3322222    11    111346


Q ss_pred             eEEEec---CCCCCEEEEEecC
Q 001311         1039 LVIAAH---PQEPNEFALGLSD 1057 (1102)
Q Consensus      1039 ~~v~f~---p~d~~~l~s~~~D 1057 (1102)
                      .+++|.   + |++.|..++..
T Consensus       254 t~vafg~~~~-D~~~Lyvtt~~  274 (302)
T d2p4oa1         254 TAVAFGQTEG-DCTAIYVVTNG  274 (302)
T ss_dssp             EEEEECCSTT-TTTEEEEEECT
T ss_pred             eEEEEcCCCC-CCCEEEEECCC
Confidence            689994   4 56766655443

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.96  E-value=2.2e-07  Score=96.60  Aligned_cols=244  Identities=13%  Similarity=0.134  Sum_probs=162.9

Q ss_pred             ceEEEEEccCCceEEEeecCceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCC-C
Q 001311          741 KISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKND-S  819 (1102)
Q Consensus       741 ~i~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~-~  819 (1102)
                      ....++++++|+.+++-..+..|++|+.+       +..+..     +  .+.      ....+.......+++..+. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-------G~~~~~-----~--~~~------~~~~~~~~~p~~~~~~~~~~~   83 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-------GRFKFQ-----F--GEC------GKRDSQLLYPNRVAVVRNSGD   83 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-------SCEEEE-----E--CCB------SSSTTCBSSEEEEEEETTTTE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-------CCEEEE-----e--ccc------CCCcccccccccccccccccc
Confidence            45789999999977776777889988742       111110     0  000      0000122234556665554 4


Q ss_pred             eEEEEe--CCeEEEEEcCCCceeeeec-CCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeee--ccccccce
Q 001311          820 YVMSAS--GGKISLFNMMTFKTMATFM-PPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKL--KGHSKRIT  894 (1102)
Q Consensus       820 ~las~s--dg~I~iwd~~~~~~~~~~~-~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l--~~h~~~V~  894 (1102)
                      ++++..  ++.|..++.. +.....+. ........+++.+ +++++++....+.+.+++. +++.+..+  ..+.....
T Consensus        84 ~~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~  160 (279)
T d1q7fa_          84 IIVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPN  160 (279)
T ss_dssp             EEEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEE
T ss_pred             cceeccCCcccccccccc-ccceeecCCCcccccceecccc-CCcEEEEeeccceeeEecc-CCceeecccccccccccc
Confidence            444443  4678888764 55555553 3345678999998 8888888777788888885 45555554  34556678


Q ss_pred             eEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCce
Q 001311          895 GLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLE  972 (1102)
Q Consensus       895 ~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~  972 (1102)
                      .+++.++++.+++....+.|++||......     ...-  ..........++++++|+.+++-  .+..|.+|+. +|+
T Consensus       161 ~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~-----~~~g--~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~  232 (279)
T d1q7fa_         161 GVVVNDKQEIFISDNRAHCVKVFNYEGQYL-----RQIG--GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQ  232 (279)
T ss_dssp             EEEECSSSEEEEEEGGGTEEEEEETTCCEE-----EEES--CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSC
T ss_pred             eeeeccceeEEeeeccccceeeeecCCcee-----eeec--ccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCC
Confidence            899999999999988899999999865321     1111  11111346789999999977773  3457999984 577


Q ss_pred             EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCce
Q 001311          973 CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLK 1016 (1102)
Q Consensus       973 ~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~ 1016 (1102)
                      .+..+...........|++.+||.+++ ++.++.|++|+.....
T Consensus       233 ~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         233 LISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             EEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSCCC
T ss_pred             EEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeeeec
Confidence            777776544456789999999997555 5678999999987654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.92  E-value=4.7e-07  Score=93.98  Aligned_cols=241  Identities=11%  Similarity=0.120  Sum_probs=163.0

Q ss_pred             CeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCC------CCCeeEEEEecCCCcEEEEE-eCCCcEEEEEeec
Q 001311          808 AVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPP------PPAATFLAFHPQDNNIIAIG-MDDSSIQIYNVRV  879 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~------~~~i~~l~~sp~d~~~lasg-~~dg~v~vwd~~~  879 (1102)
                      ....++++++|+.+++-. ++.|++||.+ ++.+..+...      ......+++..+.+.++++. +.++.|.+++. .
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-Y  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-T
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-c
Confidence            468999999999777755 7889999965 5666655321      12345677766345555543 34457777764 4


Q ss_pred             ceeeeeec-cccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE
Q 001311          880 DEVKSKLK-GHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV  958 (1102)
Q Consensus       880 ~~~~~~l~-~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~  958 (1102)
                      ++....+. .......++++.++|+++++....+.+.+++...... .  .... ..+   ......+++.++|..+++.
T Consensus       102 g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~-~--~~g~-~~~---~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL-H--KFGC-SKH---LEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEE-E--EEEC-TTT---CSSEEEEEECSSSEEEEEE
T ss_pred             ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCcee-e--cccc-ccc---ccccceeeeccceeEEeee
Confidence            55555553 3445567899999999998888888888888665221 1  1111 111   1356788999999887774


Q ss_pred             -eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeC-CCeEEEEEcCCceeEEEeCCCcccCCCCCCCcc
Q 001311          959 -HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFL-DATVCVFSAANLKLRCRINPSAYLPAGVSSSNV 1036 (1102)
Q Consensus       959 -~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~-Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v 1036 (1102)
                       ..+.|++||.. ++.+..+...++......|++.++|+++++-.. ++.|.+|+ .+|+.+..+....        ...
T Consensus       175 ~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~--------~~~  244 (279)
T d1q7fa_         175 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV--------KHA  244 (279)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS--------CCS
T ss_pred             ccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC--------CCC
Confidence             77899999974 566666654455667899999999997776543 45799998 5688877765111        112


Q ss_pred             cceEEEecCCCCCEEEEEecCCcEEEEeccCCC
Q 001311         1037 HPLVIAAHPQEPNEFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1037 ~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      .+..+++.| |+.+ ++++.++.|++|+.....
T Consensus       245 ~p~~vav~~-dG~l-~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         245 QCFDVALMD-DGSV-VLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             CEEEEEEET-TTEE-EEEETTTEEEEEECSCCC
T ss_pred             CEeEEEEeC-CCcE-EEEeCCCeEEEEEeeeec
Confidence            355888888 5655 455689999999987654

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=1.7e-07  Score=96.15  Aligned_cols=237  Identities=9%  Similarity=0.036  Sum_probs=153.9

Q ss_pred             CCCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeeccee
Q 001311          805 PEEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEV  882 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~  882 (1102)
                      +......++++++|+..++..  .+.+..++............-......+++++ +++++++...++.+++++-.+...
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            445678999999999766654  46777776654333222222234567899999 888888777777777766555544


Q ss_pred             eeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-eCC
Q 001311          883 KSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-HET  961 (1102)
Q Consensus       883 ~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~d~  961 (1102)
                      +....+ .....+|++.++++++++-..+..+..++..+...    ......+.    .....++++++|+.+++. .++
T Consensus        91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~----~~~~~~~~----~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ----TVLPFTGL----NDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSC----EECCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeee-eeecccccccccceeEeecccccccccccccccee----eeeeeccc----CCcceeeecCCCCEeeeccccc
Confidence            433332 24468899999999888877777777777655322    11111111    245789999999977774 678


Q ss_pred             eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEE
Q 001311          962 QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVI 1041 (1102)
Q Consensus       962 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v 1041 (1102)
                      .|..++...........  ........|++.++|.++++....+.|..++....... .+.      .   ...-.|..|
T Consensus       162 ~i~~~d~~~~~~~~~~~--~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~------~---~~~~~P~~i  229 (260)
T d1rwia_         162 RVVKLEAESNNQVVLPF--TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLP------F---TGLNTPLAV  229 (260)
T ss_dssp             EEEEECTTTCCEEECCC--SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECC------C---CSCCCEEEE
T ss_pred             cccccccccceeeeeec--cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEc------c---CCCCCeEEE
Confidence            89999987654433222  33567789999999998888888888988886654322 121      0   111246689


Q ss_pred             EecCCCCCEEEEEecCCcEEEEe
Q 001311         1042 AAHPQEPNEFALGLSDGGVHVFE 1064 (1102)
Q Consensus      1042 ~f~p~d~~~l~s~~~Dg~v~vW~ 1064 (1102)
                      ++.+ +++++++-..++.|+..+
T Consensus       230 ~~d~-~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         230 AVDS-DRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             EECT-TCCEEEEEGGGTEEEEEC
T ss_pred             EEeC-CCCEEEEECCCCEEEEEe
Confidence            9998 578877766666554433

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.90  E-value=1.7e-07  Score=96.24  Aligned_cols=241  Identities=9%  Similarity=0.032  Sum_probs=148.4

Q ss_pred             CCCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEE
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFG  424 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~la  424 (1102)
                      +......|+++++|..+++..+..+.|..++.........                   ..+-......++++++|++++
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v   72 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYV   72 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEE
Confidence            4456789999999995455556667888887765433321                   111123457889999999888


Q ss_pred             EEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEe
Q 001311          425 VAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVC  504 (1102)
Q Consensus       425 s~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~  504 (1102)
                      +....+.+++++-.++..+.   .. .......+|++.++++  ++++-..+..+.+++............-.....+++
T Consensus        73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~  146 (260)
T d1rwia_          73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA  146 (260)
T ss_dssp             EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred             eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence            77777777776655544332   12 2235678999999998  666666667788887655433222222223456677


Q ss_pred             eeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCCC
Q 001311          505 PHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDDF  584 (1102)
Q Consensus       505 ~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  584 (1102)
                      +  ++++.++++...++.|..++.+.............                     ....++++++++++++....+
T Consensus       147 ~--~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~---------------------~p~gi~~d~~g~l~vsd~~~~  203 (260)
T d1rwia_         147 V--DNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDIT---------------------APWGIAVDEAGTVYVTEHNTN  203 (260)
T ss_dssp             E--CTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCC---------------------SEEEEEECTTCCEEEEETTTT
T ss_pred             e--cCCCCEeeeccccccccccccccceeeeeeccccC---------------------CCccceeeeeeeeeeeecCCC
Confidence            6  45667888888888899998765432221111112                     234456666666677777788


Q ss_pred             eEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEc
Q 001311          585 SIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILAT  635 (1102)
Q Consensus       585 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~  635 (1102)
                      .|..++..... ...+. .........|+++++|.++++-..+++|+.++.
T Consensus       204 ~i~~~~~~~~~-~~~~~-~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         204 QVVKLLAGSTT-STVLP-FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEEECTTCSC-CEECC-CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EEEEEeCCCCe-EEEEc-cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            88888865443 22222 222234568999999988777666777766553

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.89  E-value=5.5e-07  Score=94.93  Aligned_cols=258  Identities=14%  Similarity=0.079  Sum_probs=155.9

Q ss_pred             CCCCeeEEEEecCCCeEEEEEe------cCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEcc
Q 001311          345 QGSSPMSMDFHPVQQTLLLVGT------NVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSP  418 (1102)
Q Consensus       345 h~~~v~~v~~spdg~~llasg~------~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~sp  418 (1102)
                      .-.....++|.|+|+.+++...      .+++|..||..+++......-               ....-.+.-..++|.+
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~---------------~~~~~~g~P~Gl~~~~   80 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP---------------EVNGYGGIPAGCQCDR   80 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC---------------EETTEECCEEEEEECS
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECC---------------ccccCCCcceeEEEeC
Confidence            4456778999999995433221      146799999988765432100               0111122457899999


Q ss_pred             CCCeEEEEECCCeEEEEEccCCceeeeEEEeeccc-cCEEEEEEcCCCCeeEEEEecC---------------CCcEEEE
Q 001311          419 DGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHV-GGVNDIAFSHPNKQLCVITCGD---------------DKTIKVW  482 (1102)
Q Consensus       419 dg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~-~~V~~v~~s~d~~~~~l~s~~~---------------d~~i~vW  482 (1102)
                      +|+.|+++...+.|...+.+++..........+.. ...+.+++.++|.  +.+|...               +|.|..+
T Consensus        81 dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~  158 (314)
T d1pjxa_          81 DANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCF  158 (314)
T ss_dssp             SSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred             CCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEE
Confidence            99998888887889899987754221100011111 1357899999998  5565321               2345445


Q ss_pred             eCCCCeeeEEeecCCCCeEEEeeeecCCc---cEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeec
Q 001311          483 DATNGAKQYIFEGHEAPVYSVCPHHKENI---QFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQG  559 (1102)
Q Consensus       483 d~~~~~~~~~~~~h~~~v~~v~~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~  559 (1102)
                      +. .|+...... ....-+.++|+++.++   .+.++-+..+.|..||+.....+...        .+...      +.+
T Consensus       159 ~~-dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~--------~~~~~------~~~  222 (314)
T d1pjxa_         159 TT-DGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENK--------KVWGH------IPG  222 (314)
T ss_dssp             CT-TSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEE--------EEEEE------CCC
T ss_pred             ee-cCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCcccccee--------eEEEE------ccc
Confidence            43 344433332 3334567888776543   24455567788888887643322110        00000      001


Q ss_pred             cccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccC
Q 001311          560 FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSD  637 (1102)
Q Consensus       560 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~  637 (1102)
                      ........++++.+|+..++....+.|.+||.+.++.+..+....  ....+++|.||++.|++. +.+|.|...++..
T Consensus       223 ~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~  299 (314)
T d1pjxa_         223 THEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPF--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSS--SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             cccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCC--CCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence            111223457888888888887788999999998888777666443  257789999999866554 5567787777643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=5.2e-07  Score=100.80  Aligned_cols=365  Identities=12%  Similarity=0.048  Sum_probs=191.4

Q ss_pred             cEEEEEeCCCeEEEEEcCCCCCeeeecCCC---CeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE--------
Q 001311          512 QFIFSTALDGKIKAWLYDNLGSRVDYEAPG---RWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA--------  580 (1102)
Q Consensus       512 ~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--------  580 (1102)
                      .+++ -..+|.|.+||+.++.....+....   ..+....++||                     +++++..        
T Consensus        29 ~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD---------------------~~~vl~~~~~~~~~r   86 (465)
T d1xfda1          29 EFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPD---------------------REYALFSYNVEPIYQ   86 (465)
T ss_dssp             CBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTT---------------------SSEEEEEESCCCCSS
T ss_pred             cEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCC---------------------CCeEEEEEcccceeE
Confidence            4443 3456789999998766543332211   12334444444                     4555543        


Q ss_pred             -eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccccccccccCCCC
Q 001311          581 -GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSENS  659 (1102)
Q Consensus       581 -~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  659 (1102)
                       +..+.+.++|+.++..............+....|||||+.||-.. ++.|.+.+..++ ...+........        
T Consensus        87 ~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~-~~~~lt~~g~~~--------  156 (465)
T d1xfda1          87 HSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGK-QAIRVVSTGKEG--------  156 (465)
T ss_dssp             SCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSS-CCEEEECCCBTT--------
T ss_pred             eeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCC-ceEEEecccCcc--------
Confidence             235789999999887654433333334566789999999998876 567888877665 222221110000        


Q ss_pred             CCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCccccccCCCcccc
Q 001311          660 KPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQCRSLRLPENLRA  739 (1102)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  739 (1102)
                                                                  .+..|-.|     |-.+.               .-.
T Consensus       157 --------------------------------------------~i~nG~~d-----~vyee---------------e~~  172 (465)
T d1xfda1         157 --------------------------------------------VIYNGLSD-----WLYEE---------------EIL  172 (465)
T ss_dssp             --------------------------------------------TEEEEECC-----HHHHH---------------TTS
T ss_pred             --------------------------------------------eeeccccc-----hhhhh---------------hhc
Confidence                                                        00000000     00000               001


Q ss_pred             cceEEEEEccCCceEEEeecC-ceEEeeecccc--c---------cCCCCcccccccceeccCCCccccccccCCC---C
Q 001311          740 TKISRLIFTNSGNAILALASN-AIHLLWKWQRT--E---------RNSSGKATASVAPQLWQPPSGIMMTNDVTDS---N  804 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~d-g~i~iw~~~~~--~---------~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~---~  804 (1102)
                      ..-..+.|||||++|+....| ..+..+.+...  .         ....|.......+.++++.++..........   .
T Consensus       173 ~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~  252 (465)
T d1xfda1         173 KTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRM  252 (465)
T ss_dssp             SSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGG
T ss_pred             cccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCcc
Confidence            112456688888887776643 44444443221  0         1112222222345566666554322111110   1


Q ss_pred             CCCCeeEEEEecCCCeEEEEeC-----CeEEEEEcCCCceeeeecCCC-CC----eeEEEEecCCCcEEE---EEeCCC-
Q 001311          805 PEEAVPCFALSKNDSYVMSASG-----GKISLFNMMTFKTMATFMPPP-PA----ATFLAFHPQDNNIIA---IGMDDS-  870 (1102)
Q Consensus       805 ~~~~i~~l~~s~d~~~las~sd-----g~I~iwd~~~~~~~~~~~~~~-~~----i~~l~~sp~d~~~la---sg~~dg-  870 (1102)
                      ...-+..+.|++++++++...+     ..|.++|..++++...+.... ..    -....|++ ||+.++   ....+| 
T Consensus       253 ~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~  331 (465)
T d1xfda1         253 REYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGR  331 (465)
T ss_dssp             SSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSS
T ss_pred             ccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeeccc
Confidence            2234678899999987776542     248889999988765543221 11    23467888 665332   222333 


Q ss_pred             -cEEEEEee------cceeeeeeccccccceeE-EEecCCCEEE-EEcCCC--cEEEEEc--CCCcccceeeeecCCCCC
Q 001311          871 -SIQIYNVR------VDEVKSKLKGHSKRITGL-AFSHALNVLV-SSGADS--QLCVWSS--DGWEKQKNRFLQIPTGRT  937 (1102)
Q Consensus       871 -~v~vwd~~------~~~~~~~l~~h~~~V~~l-~~s~d~~~l~-s~s~Dg--~i~vwd~--~~~~~~~~~~~~~~~~~~  937 (1102)
                       .++..++.      .++.+..+....-.|..+ +|..+++.|. ++..++  .-.+|.+  .++..  ..++.....  
T Consensus       332 ~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~--~~~lt~~~~--  407 (465)
T d1xfda1         332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFN--RQCLSCDLV--  407 (465)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCC--CBCSSTTSS--
T ss_pred             CceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCc--ceeeccccC--
Confidence             44444433      233444555445556664 6888877664 454432  2335544  33221  112211111  


Q ss_pred             CCCCCCcEEEEccCCcEEEEEeC----CeEEEEEcCCceEeeeec
Q 001311          938 PTAQSDTRVQFHQDQIHFLVVHE----TQLAIFETTKLECVKQWV  978 (1102)
Q Consensus       938 ~~~~~v~~~~~spdg~~l~~~~d----~~i~iwd~~~~~~~~~~~  978 (1102)
                       .......+.|||+|++++....    -.+.+++..+++.+..+.
T Consensus       408 -~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         408 -ENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             -SSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             -CCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence             1135679999999999987422    257777777777776654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.1e-06  Score=90.77  Aligned_cols=201  Identities=11%  Similarity=0.143  Sum_probs=108.6

Q ss_pred             CCCCCCeEEEEEccCCCeEEEEECCC---eEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcE--
Q 001311          405 KDPGVSVNRVIWSPDGSLFGVAYSRH---IVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTI--  479 (1102)
Q Consensus       405 ~~h~~~V~~l~~spdg~~las~~~d~---~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i--  479 (1102)
                      ..+...+...+|||||++||......   .+.+.+..++....    +..+.+.+....|+|+|+.+.+. ...++..  
T Consensus        35 ~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~spdg~~i~~~-~~~~~~~~~  109 (269)
T d2hqsa1          35 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAFSPDGSKLAFA-LSKTGSLNL  109 (269)
T ss_dssp             EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE----EECCSSCEEEEEECTTSSEEEEE-ECTTSSCEE
T ss_pred             ecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE----EeeeecccccceecCCCCeeeEe-eecCCccce
Confidence            34466788999999999999875543   46667777665432    55678889999999999963333 3333332  


Q ss_pred             EEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEE--EcCCCCCeeeecCCCCeeeEEEEccCCceee
Q 001311          480 KVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTY  557 (1102)
Q Consensus       480 ~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~  557 (1102)
                      ..+............ .........++... ...+++...++...+|  ++...... ............          
T Consensus       110 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~----------  176 (269)
T d2hqsa1         110 YVMDLASGQIRQVTD-GRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDA----------  176 (269)
T ss_dssp             EEEETTTCCEEECCC-CSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEE----------
T ss_pred             eecccccccceeeee-cccccccccccccc-ccceecccccCCceEeeeecccccce-eeeccccccccc----------
Confidence            233322333322222 33333333333222 2345555556654444  44433221 222222333333          


Q ss_pred             eccccCceeEEEEcCCCCEEEEEe-CCCe--EEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC---CcEE
Q 001311          558 QGFRKRSLGVVQFDTTKNRFLAAG-DDFS--IKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND---NGIK  631 (1102)
Q Consensus       558 ~~~~~~~i~~~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~  631 (1102)
                                 .++|++..++..+ ..+.  +.+.+...+.. ..+. ..  .......|+|||+.|+..+..   ..|+
T Consensus       177 -----------~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~-~~--~~~~~p~~SPDG~~i~f~s~~~~~~~l~  241 (269)
T d2hqsa1         177 -----------DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLS-ST--FLDETPSLAPNGTMVIYSSSQGMGSVLN  241 (269)
T ss_dssp             -----------EECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECC-CS--SSCEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred             -----------ccccccceeEEEeecCCceeeeEeecccccc-eEee-cC--ccccceEECCCCCEEEEEEcCCCCcEEE
Confidence                       4455555565544 3334  44445544433 2222 22  245678999999998866543   3566


Q ss_pred             EEEccCC
Q 001311          632 ILATSDG  638 (1102)
Q Consensus       632 iwd~~~~  638 (1102)
                      ++++..+
T Consensus       242 ~~~~dg~  248 (269)
T d2hqsa1         242 LVSTDGR  248 (269)
T ss_dssp             EEETTSC
T ss_pred             EEECCCC
Confidence            7776554

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.6e-06  Score=94.99  Aligned_cols=377  Identities=11%  Similarity=0.095  Sum_probs=193.9

Q ss_pred             EEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC----
Q 001311          353 DFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS----  428 (1102)
Q Consensus       353 ~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~----  428 (1102)
                      .|.+++.+ +. -..+|.|.+||+.+++......                ...-..-.+....|||||++|+....    
T Consensus        23 ~W~~~~~~-~~-~~~~g~i~~~~~~~~~~~~l~~----------------~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEF-IY-REQKGTVRLWNVETNTSTVLIE----------------GKKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCB-CC-CCSSSCEEEBCGGGCCCEEEEC----------------TTTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEeCCCcE-EE-EeCCCcEEEEECCCCCEEEEEc----------------CccccccccceeEECCCCCeEEEEEcccce
Confidence            47788875 33 3557899999998876543110                01112236778899999999888643    


Q ss_pred             -----CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEee-cCCCCe--
Q 001311          429 -----RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFE-GHEAPV--  500 (1102)
Q Consensus       429 -----d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~-~h~~~v--  500 (1102)
                           .+.+.++|+.++.... +.........+....|||||+.  ++-.. ++.|.+.+..++..++... +..+.|  
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n  160 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeec
Confidence                 5678999999887432 2112233456777899999996  33332 5678899988776655432 222222  


Q ss_pred             ---------------EEEeeeecCCccEEEEEeC-CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCc
Q 001311          501 ---------------YSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRS  564 (1102)
Q Consensus       501 ---------------~~v~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~  564 (1102)
                                     .++-|  ++||++|+.... +..|..+.+.....     .....+..+.+..-|..         
T Consensus       161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~-----~~~p~~~~~~Yp~~G~~---------  224 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE---------  224 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC---------
T ss_pred             cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccc-----cccceeeeeeccccCCC---------
Confidence                           23333  667777777653 33344443321100     00011122222111110         


Q ss_pred             eeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCC----CCCCcCeEEEcCCCCEEEEEEC-C---CcEEEEEcc
Q 001311          565 LGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN-D---NGIKILATS  636 (1102)
Q Consensus       565 i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~-d---g~i~iwd~~  636 (1102)
                                      .....+.++|+.++..........    ...-+..+.|++++++++.... +   ..|.++|..
T Consensus       225 ----------------np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~  288 (465)
T d1xfda1         225 ----------------NPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT  288 (465)
T ss_dssp             ----------------CCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred             ----------------CCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCC
Confidence                            011257778887665433221111    1112456889999987665543 2   247778887


Q ss_pred             CCccceeecccccccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccc---cccCCCc
Q 001311          637 DGIRLLRTFENLAYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRI---TEESNDK  713 (1102)
Q Consensus       637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~d~~  713 (1102)
                      ++ .....+......                                    +.........+.+++..++   ....++.
T Consensus       289 tg-~~~~~~~e~~~~------------------------------------wv~~~~~~p~~~~dg~~~~fi~~se~~g~  331 (465)
T d1xfda1         289 TG-VCTKKHEDESEA------------------------------------WLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (465)
T ss_dssp             TC-CEEEEEEEECSS------------------------------------CCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             CC-cEEEEEEEcCCc------------------------------------eEeccCCceeEccCCCeeEEEEeeeeccc
Confidence            77 333222211110                                    0011122334455555432   2223333


Q ss_pred             cceEec--ccC---CCCCccccccCCCcccccceEEE-EEccCCceEEEee-cC--ceEEeeeccccccCCCCccccccc
Q 001311          714 SKVWKL--TEL---SEPNQCRSLRLPENLRATKISRL-IFTNSGNAILALA-SN--AIHLLWKWQRTERNSSGKATASVA  784 (1102)
Q Consensus       714 i~~w~~--~~~---~~~~~~~~~~~~~~~~~~~i~~~-~~s~~g~~l~~~~-~d--g~i~iw~~~~~~~~~~~~~~~~~~  784 (1102)
                      -.+|.+  ...   ......+.++    ...-.|..+ .++.+++.+.-.+ .+  +.-.+|.+..              
T Consensus       332 ~~ly~~~~~~~~~~~~~~~~~~LT----~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l--------------  393 (465)
T d1xfda1         332 GKFYHITVSSSQPNSSNDNIQSIT----SGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT--------------  393 (465)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSC----CSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS--------------
T ss_pred             CceEEEEeccccccCCCceeEEec----cCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEEC--------------
Confidence            333322  111   1112222222    123445554 5788877664333 22  3334554421              


Q ss_pred             ceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEeC----CeEEEEEcCCCceeeeec
Q 001311          785 PQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSASG----GKISLFNMMTFKTMATFM  844 (1102)
Q Consensus       785 ~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~sd----g~I~iwd~~~~~~~~~~~  844 (1102)
                         .......++...+   ........+.|||++++++....    -.+.+++..+++.+..+.
T Consensus       394 ---~g~~~~~~lt~~~---~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le  451 (465)
T d1xfda1         394 ---VGNFNRQCLSCDL---VENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE  451 (465)
T ss_dssp             ---STTCCCBCSSTTS---SSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred             ---CCCCcceeecccc---CCCCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence               1111111222111   13445678999999999987653    347888888888777765

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.83  E-value=2.1e-06  Score=90.70  Aligned_cols=235  Identities=12%  Similarity=0.084  Sum_probs=148.3

Q ss_pred             CCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCC----CcEEEEEeecc
Q 001311          806 EEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDD----SSIQIYNVRVD  880 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~d----g~v~vwd~~~~  880 (1102)
                      ...+..++|+++|++.++-. ++.|..|+..+......+.........+++++ ||+++++...+    +.|...+...+
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCc
Confidence            34457899999998666554 78999999888766666655666789999999 88888765432    23444444443


Q ss_pred             eeeeeecc--ccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCC
Q 001311          881 EVKSKLKG--HSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQ  952 (1102)
Q Consensus       881 ~~~~~l~~--h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  952 (1102)
                      ........  -......+++.++|++.++....      +.+..++.+.....  ......       .....++|+||+
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~--~~~~~~-------~~pnGia~s~dg  188 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT--PIIQNI-------SVANGIALSTDE  188 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE--EEEEEE-------SSEEEEEECTTS
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeE--EEeecc-------ceeeeeeecccc
Confidence            33322221  12346779999999987765332      22444444432211  111111       133679999999


Q ss_pred             cEEEEE--eCCeEEEEEcCCc-eEee---e--eccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCC
Q 001311          953 IHFLVV--HETQLAIFETTKL-ECVK---Q--WVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPS 1024 (1102)
Q Consensus       953 ~~l~~~--~d~~i~iwd~~~~-~~~~---~--~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~ 1024 (1102)
                      +.|.++  ..+.|..|++... ....   .  ............+++..+|++.++....+.|.+|| .+|+.+.++.  
T Consensus       189 ~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~-p~G~~l~~i~--  265 (319)
T d2dg1a1         189 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFN-KRGYPIGQIL--  265 (319)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEEC-TTSCEEEEEE--
T ss_pred             ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEEC-CCCcEEEEEe--
Confidence            877664  5789999987542 1111   1  11111123467899999999888888899999999 5799998887  


Q ss_pred             cccCCCCCCCcccceEEEecCCCCCEEEEEec
Q 001311         1025 AYLPAGVSSSNVHPLVIAAHPQEPNEFALGLS 1056 (1102)
Q Consensus      1025 ~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~ 1056 (1102)
                        +|.........+.+++|.+. .+.+++...
T Consensus       266 --~P~~~~~~~~~~~~~~~~~~-~~~~~~t~~  294 (319)
T d2dg1a1         266 --IPGRDEGHMLRSTHPQFIPG-TNQLIICSN  294 (319)
T ss_dssp             --CTTGGGTCSCBCCEEEECTT-SCEEEEEEE
T ss_pred             --CCCcCCCcCceeeeEEEeCC-CCEEEEEcC
Confidence              34322222344558999884 455544443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=3.8e-07  Score=94.29  Aligned_cols=237  Identities=11%  Similarity=0.033  Sum_probs=136.8

Q ss_pred             CCCCCCCccceeeccCCCCeeEEEEecCCCeEEEEEecCC--eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCC
Q 001311          330 STPEDLPKTVTRTLNQGSSPMSMDFHPVQQTLLLVGTNVG--DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDP  407 (1102)
Q Consensus       330 ~~~~~~~~~~~~~~~h~~~v~~v~~spdg~~llasg~~d~--~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  407 (1102)
                      |..|..-.+...+..+...+..-+|||||++|+.+....+  .+.+.+..++....                    +..+
T Consensus        22 ~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~   81 (269)
T d2hqsa1          22 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASF   81 (269)
T ss_dssp             EEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECC
T ss_pred             EEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeee
Confidence            3333334455566677888999999999999666655444  46666666555432                    4566


Q ss_pred             CCCeEEEEEccCCCeEEEEEC-CCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCc--EEEEeC
Q 001311          408 GVSVNRVIWSPDGSLFGVAYS-RHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKT--IKVWDA  484 (1102)
Q Consensus       408 ~~~V~~l~~spdg~~las~~~-d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~--i~vWd~  484 (1102)
                      .+.+....|||||+.++.... ++...++.........  .....+........+++++.. .+++...++.  |.+.++
T Consensus        82 ~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~  158 (269)
T d2hqsa1          82 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNI  158 (269)
T ss_dssp             SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEET
T ss_pred             ecccccceecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeeec
Confidence            788899999999999998654 3333333333222111  113334455566778888875 4555555554  555565


Q ss_pred             CCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeC-CCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccC
Q 001311          485 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKR  563 (1102)
Q Consensus       485 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~  563 (1102)
                      ..+.. ..+..+........|  ++++..++..+. .+...+|..+...................|+|||+         
T Consensus       159 ~~~~~-~~~~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~---------  226 (269)
T d2hqsa1         159 NGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGT---------  226 (269)
T ss_dssp             TSSCC-EECCCSSSEEEEEEE--CTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSS---------
T ss_pred             ccccc-eeeeccccccccccc--ccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCC---------
Confidence            55543 333344454555555  455566665544 45555555544333333333333344455555555         


Q ss_pred             ceeEEEEcCCCCEEEEEe---CCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcC
Q 001311          564 SLGVVQFDTTKNRFLAAG---DDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNK  616 (1102)
Q Consensus       564 ~i~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~  616 (1102)
                                  .|+-.+   ....|+++++..+.... +....  ..+...+|+|
T Consensus       227 ------------~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~~~~p~WSP  267 (269)
T d2hqsa1         227 ------------MVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQVKFPAWSP  267 (269)
T ss_dssp             ------------EEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SEEEEEEECC
T ss_pred             ------------EEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--CcEEeEEeCC
Confidence                        454332   34578999997766543 33232  2466778887

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.78  E-value=1.3e-06  Score=92.04  Aligned_cols=239  Identities=15%  Similarity=0.168  Sum_probs=151.0

Q ss_pred             eeEEEEecCCCeEEEEe--------CCeEEEEEcCCCceeeeecCC----CCCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 001311          809 VPCFALSKNDSYVMSAS--------GGKISLFNMMTFKTMATFMPP----PPAATFLAFHPQDNNIIAIGMDDSSIQIYN  876 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s--------dg~I~iwd~~~~~~~~~~~~~----~~~i~~l~~sp~d~~~lasg~~dg~v~vwd  876 (1102)
                      ...++|.++|+++++..        +++|..||..++.........    .+....++|++ +++.|++++..+.|..++
T Consensus        20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~~   98 (314)
T d1pjxa_          20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVVQ   98 (314)
T ss_dssp             CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEEE
T ss_pred             CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEEe
Confidence            56789999999877643        367889998877654433221    23467899999 787777777777788888


Q ss_pred             eecceeeeeecccc----ccceeEEEecCCCEEEEEcC---------------CCcEEEEEcCCCcccceeeeecCCCCC
Q 001311          877 VRVDEVKSKLKGHS----KRITGLAFSHALNVLVSSGA---------------DSQLCVWSSDGWEKQKNRFLQIPTGRT  937 (1102)
Q Consensus       877 ~~~~~~~~~l~~h~----~~V~~l~~s~d~~~l~s~s~---------------Dg~i~vwd~~~~~~~~~~~~~~~~~~~  937 (1102)
                      ..............    ...+.+++.++|++.++-..               +|.|..++.+. +.  .......    
T Consensus        99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~--~~~~~~~----  171 (314)
T d1pjxa_          99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QM--IQVDTAF----  171 (314)
T ss_dssp             TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CE--EEEEEEE----
T ss_pred             CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ce--eEeeCCc----
Confidence            76543221111111    13577999999998887532               12343343332 11  1111111    


Q ss_pred             CCCCCCcEEEEccCCc----EEEEE--eCCeEEEEEcCCceEeee---ec--cCCCCCCeeEEEEcCCCcEEEEEeCCCe
Q 001311          938 PTAQSDTRVQFHQDQI----HFLVV--HETQLAIFETTKLECVKQ---WV--PRESSAPITHATFSCDSQLVYACFLDAT 1006 (1102)
Q Consensus       938 ~~~~~v~~~~~spdg~----~l~~~--~d~~i~iwd~~~~~~~~~---~~--~~~h~~~v~~l~~spd~~~l~s~s~Dg~ 1006 (1102)
                         .....++|++++.    .|.++  ..+.|..|++.....+..   +.  ...+......+++..+|+++++....+.
T Consensus       172 ---~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~  248 (314)
T d1pjxa_         172 ---QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             ---SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             ---ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE
Confidence               1235789998864    45443  667888888754322221   11  1122334678999999998888888899


Q ss_pred             EEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCC-EEEEEecCCcEEEEeccCCC
Q 001311         1007 VCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPN-EFALGLSDGGVHVFEPLESE 1069 (1102)
Q Consensus      1007 I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~-~l~s~~~Dg~v~vW~~~~~~ 1069 (1102)
                      |.+||.++++.+..+.    .+.      -.+.+++|.| |++ +.++.+.+|.|...++....
T Consensus       249 I~~~dp~~g~~~~~i~----~p~------~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~G  301 (314)
T d1pjxa_         249 IEVFGPDGGQPKMRIR----CPF------EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNG  301 (314)
T ss_dssp             EEEECTTCBSCSEEEE----CSS------SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCB
T ss_pred             EEEEeCCCCEEEEEEE----CCC------CCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCCC
Confidence            9999999888777665    221      2345899998 555 66777777888777765443

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.71  E-value=1.2e-05  Score=84.72  Aligned_cols=241  Identities=12%  Similarity=0.063  Sum_probs=149.2

Q ss_pred             CCCeeEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEE
Q 001311          346 GSSPMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGV  425 (1102)
Q Consensus       346 ~~~v~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las  425 (1102)
                      ...+..++|.++|+ |.++-...+.|..|+..+++....                   ..........++|++||+++++
T Consensus        39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va   98 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVC   98 (319)
T ss_dssp             CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEE
T ss_pred             CcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEEE
Confidence            34567999999998 678877889999999887654432                   2334456889999999998887


Q ss_pred             EECC----CeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecC------CCcEEEEeCCCCeeeEEeec
Q 001311          426 AYSR----HIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGD------DKTIKVWDATNGAKQYIFEG  495 (1102)
Q Consensus       426 ~~~d----~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~------d~~i~vWd~~~~~~~~~~~~  495 (1102)
                      ...+    +.|...+..++.... ...-..-......+++.++|.  +.++...      .+.+..++.. ++.+..+..
T Consensus        99 ~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~  174 (319)
T d2dg1a1          99 YLGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQ  174 (319)
T ss_dssp             ECTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTT-SCCEEEEEE
T ss_pred             ecCCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecc-cceeEEEee
Confidence            6432    334444555544322 111111123578899999998  5555322      1235555543 333333333


Q ss_pred             CCCCeEEEeeeecCCccEE-EEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311          496 HEAPVYSVCPHHKENIQFI-FSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  574 (1102)
Q Consensus       496 h~~~v~~v~~~~~~~~~~l-~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  574 (1102)
                      .-...+.++|+  ++++.| ++-+..+.|..|+++..........     .......        ........++++.+|
T Consensus       175 ~~~~pnGia~s--~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~-----~~~~~~~--------~~~~~PdGl~vD~~G  239 (319)
T d2dg1a1         175 NISVANGIALS--TDEKVLWVTETTANRLHRIALEDDGVTIQPFG-----ATIPYYF--------TGHEGPDSCCIDSDD  239 (319)
T ss_dssp             EESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----EEEEEEC--------CSSSEEEEEEEBTTC
T ss_pred             ccceeeeeeec--cccceEEEecccCCceEEEEEcCCCceecccc-----ceeeecc--------CCccceeeeeEcCCC
Confidence            33445778874  455544 5556788999998875432211000     0000000        001123457888888


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEcCCC----CCCCcCeEEEcCCCCEEEEEEC
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADG----GLPASPRIRFNKDGCLLAVSTN  626 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~  626 (1102)
                      ++.++....+.|.+||. .|+.+..+....    ....+.+++|.+++..+++...
T Consensus       240 ~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         240 NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            88888888999999996 688888776432    2335789999998887777654

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.33  E-value=1e-05  Score=83.50  Aligned_cols=200  Identities=15%  Similarity=0.110  Sum_probs=118.1

Q ss_pred             EEecC--CCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeC-CC-----cEEEEEeecceeee
Q 001311          813 ALSKN--DSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMD-DS-----SIQIYNVRVDEVKS  884 (1102)
Q Consensus       813 ~~s~d--~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~-dg-----~v~vwd~~~~~~~~  884 (1102)
                      ..+||  |+.+|..+++.|.+.|+.+++. +.+..+...+...+||| ||+.||.... ++     .|++++..+++...
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~-~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGST-RKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCE-EEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCE-EEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46799  9999988888999999998775 45655677789999999 8888886542 22     47777777766543


Q ss_pred             eec------cccccceeEEEecCCCEEEEEcCC------CcEEEEEcCCCcccc--------------eeeeecCCCCC-
Q 001311          885 KLK------GHSKRITGLAFSHALNVLVSSGAD------SQLCVWSSDGWEKQK--------------NRFLQIPTGRT-  937 (1102)
Q Consensus       885 ~l~------~h~~~V~~l~~s~d~~~l~s~s~D------g~i~vwd~~~~~~~~--------------~~~~~~~~~~~-  937 (1102)
                      ...      .........+|+|||+.|+.....      ..+...+..++....              ........... 
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELP  162 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCT
T ss_pred             eeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccceeeecCCCeEEEeeccccc
Confidence            221      122345678999999998875332      123444444332111              00000000000 


Q ss_pred             --------------------------CCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceEeeeeccCCCCCCeeEE
Q 001311          938 --------------------------PTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVKQWVPRESSAPITHA  989 (1102)
Q Consensus       938 --------------------------~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l  989 (1102)
                                                ..........++++..+....  ....|.++|+.+++......  .  ......
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~--~--~~~~~~  238 (281)
T d1k32a2         163 HWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTS--F--TDYYPR  238 (281)
T ss_dssp             TSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCC--C--CSSCEE
T ss_pred             eeeeeccCCcceeeeeccccceeeccCCccccceeeeeccccceecccccccceEEEeCCCCceEEeec--C--CCcccc
Confidence                                      000111223333432222221  23468888887766544322  1  122334


Q ss_pred             EEcCCCcEEEEEeCCCeEEEEEcCCceeEE
Q 001311          990 TFSCDSQLVYACFLDATVCVFSAANLKLRC 1019 (1102)
Q Consensus       990 ~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~ 1019 (1102)
                      .|||||+.|+.. .++.|+++|+++++...
T Consensus       239 ~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~  267 (281)
T d1k32a2         239 HLNTDGRRILFS-KGGSIYIFNPDTEKIEK  267 (281)
T ss_dssp             EEEESSSCEEEE-ETTEEEEECTTTCCEEE
T ss_pred             cCcCCCCEEEEE-eCCEEEEEECCCCCEEE
Confidence            689999998864 47899999999987653

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.28  E-value=0.0004  Score=71.51  Aligned_cols=222  Identities=8%  Similarity=0.021  Sum_probs=144.0

Q ss_pred             eEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311          810 PCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       810 ~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  887 (1102)
                      .+..|++....|....  .+.|..||..+++.. .+. ....+.++++.+ +++++++ +.+ .|.++|..+++......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence            3567887655555554  688999999887643 332 345688999998 7777764 455 58899998876433221


Q ss_pred             --c--ccccceeEEEecCCCEEEEEcCC----CcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-
Q 001311          888 --G--HSKRITGLAFSHALNVLVSSGAD----SQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-  958 (1102)
Q Consensus       888 --~--h~~~V~~l~~s~d~~~l~s~s~D----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-  958 (1102)
                        .  ....++.+.+.++|++.++...+    +.-.+|.+..++...  .....       .....++|+++++.+..+ 
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~--~~~~~-------~~~Ng~~~s~d~~~l~~~d  166 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTK--LFADI-------SIPNSICFSPDGTTGYFVD  166 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEE--EEEEE-------SSEEEEEECTTSCEEEEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEE--Eeecc-------CCcceeeecCCCceEEEee
Confidence              1  22357889999999987765432    345667666554321  11111       133689999999987775 


Q ss_pred             -eCCeEEEEEcCCce------EeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCC
Q 001311          959 -HETQLAIFETTKLE------CVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGV 1031 (1102)
Q Consensus       959 -~d~~i~iwd~~~~~------~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh 1031 (1102)
                       ..+.|..|++....      ........+..+....+++..+|.+.++.-..+.|..|| .+|+++..+.    +|.  
T Consensus       167 t~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~----lP~--  239 (295)
T d2ghsa1         167 TKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYE----VPG--  239 (295)
T ss_dssp             TTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEE----CSC--
T ss_pred             cccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEec----CCC--
Confidence             56788888864311      111111123345688999999999888777788999999 5788998887    442  


Q ss_pred             CCCcccceEEEecCCCCCEE-EEEec
Q 001311         1032 SSSNVHPLVIAAHPQEPNEF-ALGLS 1056 (1102)
Q Consensus      1032 ~~~~v~~~~v~f~p~d~~~l-~s~~~ 1056 (1102)
                          -.+.+++|-..|.+.| +|...
T Consensus       240 ----~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         240 ----KQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             ----SBEEEEEEESTTSCEEEEEEBC
T ss_pred             ----CceEEEEEeCCCCCEEEEEECC
Confidence                2355899975455544 54443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.28  E-value=3.9e-05  Score=78.93  Aligned_cols=93  Identities=13%  Similarity=0.117  Sum_probs=64.5

Q ss_pred             EEecC--CCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEEC-C
Q 001311          353 DFHPV--QQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYS-R  429 (1102)
Q Consensus       353 ~~spd--g~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~-d  429 (1102)
                      ..|||  |++++.+.  ++.|.+.|+.+++...                    +..+.+.+...+|||||++||.... +
T Consensus         5 ~~sPdi~G~~v~f~~--~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~   62 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC--CDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG   62 (281)
T ss_dssp             CEEEEEETTEEEEEE--TTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred             ccCCCCCCCEEEEEe--CCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence            46899  99866664  3678888999887653                    5566778899999999999997542 2


Q ss_pred             -----CeEEEEEccCCceeeeEE---EeeccccCEEEEEEcCCCCe
Q 001311          430 -----HIVQIYSYHGGDEVRQHL---EIDAHVGGVNDIAFSHPNKQ  467 (1102)
Q Consensus       430 -----~~v~vwd~~~~~~~~~~~---~l~~h~~~V~~v~~s~d~~~  467 (1102)
                           ..|.+++..+++..+...   ............+|+|||+.
T Consensus        63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~  108 (281)
T d1k32a2          63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL  108 (281)
T ss_dssp             TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE
T ss_pred             CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE
Confidence                 247777888876543110   01122235678899999994

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.23  E-value=0.00033  Score=72.17  Aligned_cols=233  Identities=12%  Similarity=0.042  Sum_probs=147.0

Q ss_pred             eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC
Q 001311          350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  429 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  429 (1102)
                      .+..|++....|..+--..+.|.-||..+++....                     .....+.++++.++|.+++++ .+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~---------------------~~~~~~~~i~~~~dg~l~va~-~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH---------------------ALPFMGSALAKISDSKQLIAS-DD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE---------------------ECSSCEEEEEEEETTEEEEEE-TT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE---------------------ECCCCcEEEEEecCCCEEEEE-eC
Confidence            46778886666677766778999999998865421                     113468899999999887754 44


Q ss_pred             CeEEEEEccCCceeeeEEEeecc--ccCEEEEEEcCCCCeeEEEEecC----CCcEEEEeCCCCeeeEEeecCCCCeEEE
Q 001311          430 HIVQIYSYHGGDEVRQHLEIDAH--VGGVNDIAFSHPNKQLCVITCGD----DKTIKVWDATNGAKQYIFEGHEAPVYSV  503 (1102)
Q Consensus       430 ~~v~vwd~~~~~~~~~~~~l~~h--~~~V~~v~~s~d~~~~~l~s~~~----d~~i~vWd~~~~~~~~~~~~h~~~v~~v  503 (1102)
                       -+.++|..+++... +......  ...++.+.+.++|.  +.++...    .+.-.+|.+..++....+.+ ...-+.+
T Consensus        79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~  153 (295)
T d2ghsa1          79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI  153 (295)
T ss_dssp             -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred             -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence             58899999987432 2122111  23588999999998  4444322    23456777777766555543 3345677


Q ss_pred             eeeecCCccEEEEEeCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEEeCC
Q 001311          504 CPHHKENIQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAAGDD  583 (1102)
Q Consensus       504 ~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  583 (1102)
                      +|+++.+ .++++-+..+.|..++++.......-   ..  . +.....       ...+....++++.+|++.++.-..
T Consensus       154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~---~~--~-~~~~~~-------~~~g~pdG~~vD~~GnlWva~~~~  219 (295)
T d2ghsa1         154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTG---KA--E-VFIDST-------GIKGGMDGSVCDAEGHIWNARWGE  219 (295)
T ss_dssp             EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSS---CC--E-EEEECT-------TSSSEEEEEEECTTSCEEEEEETT
T ss_pred             eecCCCc-eEEEeecccceeeEeeeccccccccc---ce--E-EEeccC-------cccccccceEEcCCCCEEeeeeCC
Confidence            7754332 35566677888988887643221100   00  0 000000       011234557778888877777778


Q ss_pred             CeEEEEECCCcceEEEEcCCCCCCCcCeEEEc-CCCCEEEEEEC
Q 001311          584 FSIKFWDMDSVQLLTSIDADGGLPASPRIRFN-KDGCLLAVSTN  626 (1102)
Q Consensus       584 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~  626 (1102)
                      +.|..||. +|+.+..+.....  .+++++|- +|.+.|++.+.
T Consensus       220 g~V~~~dp-~G~~~~~i~lP~~--~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         220 GAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             TEEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEEEEB
T ss_pred             CceEEecC-CCcEeeEecCCCC--ceEEEEEeCCCCCEEEEEEC
Confidence            89999995 6888888876533  58899996 57777766543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.91  E-value=0.0017  Score=67.31  Aligned_cols=260  Identities=13%  Similarity=0.118  Sum_probs=152.2

Q ss_pred             EEEEe---cCCCeEEEEe--CCeEEEEEcCCCceeeeecC-CCCCeeEEEEecC-CCcEEEEEeCC--------------
Q 001311          811 CFALS---KNDSYVMSAS--GGKISLFNMMTFKTMATFMP-PPPAATFLAFHPQ-DNNIIAIGMDD--------------  869 (1102)
Q Consensus       811 ~l~~s---~d~~~las~s--dg~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~-d~~~lasg~~d--------------  869 (1102)
                      .+.+.   +||+++.+..  ++.|.+.|+.+.++.+.+.. ....+..+...++ .-.|++.++++              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            45554   4899999987  68899999999988665432 3345666666541 34577666653              


Q ss_pred             ----CcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCC---------------cEEEEEcCCCcc------
Q 001311          870 ----SSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADS---------------QLCVWSSDGWEK------  924 (1102)
Q Consensus       870 ----g~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg---------------~i~vwd~~~~~~------  924 (1102)
                          +.+.++|..+.+...++.- .+....+.+++||+++++.+.+.               .+.+++....+.      
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                2366788888777666542 23466799999999999876431               133333321100      


Q ss_pred             ----cceeeeecCCCC-------CCCCCCCcEEEEccCCcEEEEE--eCCeEEEEEcCCceEee--------eecc-CCC
Q 001311          925 ----QKNRFLQIPTGR-------TPTAQSDTRVQFHQDQIHFLVV--HETQLAIFETTKLECVK--------QWVP-RES  982 (1102)
Q Consensus       925 ----~~~~~~~~~~~~-------~~~~~~v~~~~~spdg~~l~~~--~d~~i~iwd~~~~~~~~--------~~~~-~~h  982 (1102)
                          ....++......       .+.+.....+.++|||++++++  .+.++.|+|+++.....        .+.. ...
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~el  327 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  327 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBC
T ss_pred             cEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeeccc
Confidence                000011100000       0011245789999999999995  68899999996532110        0000 012


Q ss_pred             CCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCc----------eeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEE
Q 001311          983 SAPITHATFSCDSQLVYACFLDATVCVFSAANL----------KLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFA 1052 (1102)
Q Consensus       983 ~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~----------~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~ 1052 (1102)
                      .-....-+|+..|.-..|---|..|.-|++...          ..+.++.. .|.+ ||.   ..+++-...| ||++|+
T Consensus       328 glgPLht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v-~y~~-gh~---~~~~g~t~~~-dgk~l~  401 (459)
T d1fwxa2         328 GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQP-GHL---KTVMGETLDA-TNDWLV  401 (459)
T ss_dssp             CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCE-EEE---EETTTTSTTC-CSSEEE
T ss_pred             CcCccccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceecccc-ccCC-CCC---ccCcCCcCCC-CCCEEE
Confidence            445677899888865566668999999998543          45556652 2222 110   0011222345 678888


Q ss_pred             EEec---CC----------cEEEEeccCCCcccccCCC
Q 001311         1053 LGLS---DG----------GVHVFEPLESEGKWGVPPP 1077 (1102)
Q Consensus      1053 s~~~---Dg----------~v~vW~~~~~~~~~~~~~~ 1077 (1102)
                      +...   |+          +-.+.|++..++++-..-|
T Consensus       402 ~~nk~skdrfl~vgpl~pe~~qlidisg~~m~l~~d~p  439 (459)
T d1fwxa2         402 CLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLVHDGP  439 (459)
T ss_dssp             EEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEEEEEE
T ss_pred             EecccccccccCCCCCCCccceEEEcCCCeeEEEeccC
Confidence            7752   22          3457787766654444333

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.75  E-value=0.027  Score=63.39  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=43.6

Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      |.|.-||..+++.+-.....   .++.+=.++-.|.+++.|+.||.++.+|..+|+.+-++.
T Consensus       453 G~l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~  511 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ceEEEEeCCCCceecccCCC---CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence            57888899998876554321   222222233467788889999999999999999998887

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.75  E-value=0.0029  Score=65.52  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=65.9

Q ss_pred             eeEEEEecCCCeEEEEe--CCeEEEEEcCCCcee-----------eeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 001311          809 VPCFALSKNDSYVMSAS--GGKISLFNMMTFKTM-----------ATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIY  875 (1102)
Q Consensus       809 i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~-----------~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vw  875 (1102)
                      ...+.++|||+++++++  +.++.|+|++.....           ..-....-.....+|+. .|+-..+-.-|.+|--|
T Consensus       277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~-~g~aytslfids~v~kw  355 (459)
T d1fwxa2         277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDG-RGNAYTSLFLDSQVVKW  355 (459)
T ss_dssp             CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECT-TSEEEEEETTTTEEEEE
T ss_pred             CCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCC-CceEEEEeeccceEEEE
Confidence            45789999999999887  789999998632211           11111233467788988 77766667789999999


Q ss_pred             Eeecc----------eeeeeecc-----ccccceeEEEecCCCEEEEEc
Q 001311          876 NVRVD----------EVKSKLKG-----HSKRITGLAFSHALNVLVSSG  909 (1102)
Q Consensus       876 d~~~~----------~~~~~l~~-----h~~~V~~l~~s~d~~~l~s~s  909 (1102)
                      ++...          ..+.++.-     |.....+-...|||++|++..
T Consensus       356 ~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         356 NIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEec
Confidence            98643          33444433     322222223468999999875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.72  E-value=0.012  Score=66.12  Aligned_cols=83  Identities=13%  Similarity=0.028  Sum_probs=53.0

Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceE
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLV 1040 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~ 1040 (1102)
                      |.|.-+|+.+|+.+-......   +..+=.++-.+.++++|+.||.++.+|.++|+.+-+++    ++.+     +...-
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~---~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~----l~~~-----~~a~P  511 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK----MPSG-----GIGSP  511 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE----CSSC-----CCSCC
T ss_pred             ccEEEeccCCCceeeEcCCCC---CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE----CCCC-----ceecc
Confidence            578889999998876654321   11111122246678889999999999999999998887    4443     22113


Q ss_pred             EEecCCCCCEEEEEe
Q 001311         1041 IAAHPQEPNEFALGL 1055 (1102)
Q Consensus      1041 v~f~p~d~~~l~s~~ 1055 (1102)
                      +.|..+..+++++..
T Consensus       512 ~ty~~dGkqYi~v~~  526 (571)
T d2ad6a1         512 MTYSFKGKQYIGSMY  526 (571)
T ss_dssp             EEEEETTEEEEEEEE
T ss_pred             eEEEECCEEEEEEEe
Confidence            555553334555544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.71  E-value=0.0035  Score=70.83  Aligned_cols=183  Identities=11%  Similarity=0.096  Sum_probs=93.9

Q ss_pred             eEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce-eeeeecc-ccc-ccee
Q 001311          820 YVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE-VKSKLKG-HSK-RITG  895 (1102)
Q Consensus       820 ~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~-~~~~l~~-h~~-~V~~  895 (1102)
                      .++.++ +|.+.++|..+++.+......... ..-.+.. .+..+..-.         ...+. ....+.+ +.+ .-..
T Consensus       329 ~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~-~~~~~~~-~~~~~~~~~---------~~~~~~~~~~~pg~~Gg~~w~~  397 (573)
T d1kb0a2         329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVN-WASGYDK-HGKPIGIAA---------ARDGSKPQDAVPGPYGAHNWHP  397 (573)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEECT-TSCEEECGG---------GGCTTSCEECSSCTTCSSCSSC
T ss_pred             eeeeccccceeEEeccccccccccccccccc-ccccccc-ccceeeeee---------ccccccceEEeecccCCccccc
Confidence            444555 799999999999988765432221 1111222 222211100         00011 1111111 111 1234


Q ss_pred             EEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEEeCCeEEEEEcCCceEee
Q 001311          896 LAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIFETTKLECVK  975 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~d~~i~iwd~~~~~~~~  975 (1102)
                      ++++|+..+++....+....++.....+...........+     .......+ .++.-.....-|.+.-||+.+++.+-
T Consensus       398 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W  471 (573)
T d1kb0a2         398 MSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG-----TGWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAW  471 (573)
T ss_dssp             CEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG-----GTCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEE
T ss_pred             cccCCCcceEEeeccccceeeecccccccccCCCCccccc-----cccccccc-cccCCCCCCCcccEEEeCCCCCceEe
Confidence            6889998888888777777666655432211000000000     00000000 00000000112578888999998876


Q ss_pred             eeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          976 QWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       976 ~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      ......   +...=.++-+|.++++|+.||.++.+|.++|+.+-++.
T Consensus       472 ~~~~~~---p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         472 SVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             EEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eecCCC---CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            654321   21111233468888899999999999999999998887

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.69  E-value=0.01  Score=66.60  Aligned_cols=149  Identities=11%  Similarity=0.043  Sum_probs=91.3

Q ss_pred             cEEEEEeecceeeeeecccccccee---------EEEecCC---CEEEEEcCCCcEEEEEcCCCcccceeeeec------
Q 001311          871 SIQIYNVRVDEVKSKLKGHSKRITG---------LAFSHAL---NVLVSSGADSQLCVWSSDGWEKQKNRFLQI------  932 (1102)
Q Consensus       871 ~v~vwd~~~~~~~~~l~~h~~~V~~---------l~~s~d~---~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~------  932 (1102)
                      .|.-.|+++++.+..++.....++.         +....++   +.++.++.+|.+.++|-.+++.........      
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~  350 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK  350 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence            4666677888776555432222221         1222244   367778899999999999887643221100      


Q ss_pred             -----------CC-----------CCCCCCCCCcEEEEccCCcEEEE-EeC-----------------------------
Q 001311          933 -----------PT-----------GRTPTAQSDTRVQFHQDQIHFLV-VHE-----------------------------  960 (1102)
Q Consensus       933 -----------~~-----------~~~~~~~~v~~~~~spdg~~l~~-~~d-----------------------------  960 (1102)
                                 ..           ........-...+++|+..++.+ ..+                             
T Consensus       351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (560)
T d1kv9a2         351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD  430 (560)
T ss_dssp             ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred             cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence                       00           00000001135678888777776 221                             


Q ss_pred             -------CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          961 -------TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 -------~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                             +.|.-||+.+++.+-......+   ..+-.++-.+.++++|+.||.++.+|.++|+.+-+++
T Consensus       431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~---~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~  496 (560)
T d1kv9a2         431 VPAAVVSGALLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE  496 (560)
T ss_dssp             CCGGGCEEEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCCcccccceEEEeCCCCeEeeeccCCCC---CCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence                   4678889999998876654322   2222233357788889999999999999999998888

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.59  E-value=0.054  Score=60.85  Aligned_cols=59  Identities=15%  Similarity=0.137  Sum_probs=44.5

Q ss_pred             CeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          961 TQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       961 ~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      |.|.-+|+.+|+.+-.....   .++.+-.++-.|.++++|+.||.++.+|.+||+.+-+++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~---~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEH---LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCC---CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            56888888998887665532   222222234567788889999999999999999998888

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.59  E-value=0.015  Score=61.89  Aligned_cols=260  Identities=14%  Similarity=0.073  Sum_probs=133.3

Q ss_pred             eeccCCCccccccccCCCCCCCCeeEEEEecCCCeEEEEe-C-CeEEEEEcCCCceeeeecCC-CCCeeEEEEecCCCcE
Q 001311          786 QLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVMSAS-G-GKISLFNMMTFKTMATFMPP-PPAATFLAFHPQDNNI  862 (1102)
Q Consensus       786 ~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~las~s-d-g~I~iwd~~~~~~~~~~~~~-~~~i~~l~~sp~d~~~  862 (1102)
                      .+||+.++...........+.......++.+|+++++.|. + ..+.+||..+..-...-... ...-.+++..+ |+++
T Consensus        55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v  133 (387)
T d1k3ia3          55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRV  133 (387)
T ss_dssp             EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCE
T ss_pred             EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCce
Confidence            4566666654322111112334445678889999999987 3 67999999875543221111 11234566667 8899


Q ss_pred             EEEEeCC------CcEEEEEeecceeee--ee-------ccccc-----cceeEEEecCCCEEEEEcCCCcEEEEEcCCC
Q 001311          863 IAIGMDD------SSIQIYNVRVDEVKS--KL-------KGHSK-----RITGLAFSHALNVLVSSGADSQLCVWSSDGW  922 (1102)
Q Consensus       863 lasg~~d------g~v~vwd~~~~~~~~--~l-------~~h~~-----~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~  922 (1102)
                      ++.|+.+      ..+.+||..+.+-..  ..       ..+..     .-..+...++|+.++.++.++.+.+++..+.
T Consensus       134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~  213 (387)
T d1k3ia3         134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  213 (387)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence            9988753      368999987754221  11       00111     1112334467888888877777777777665


Q ss_pred             cccceeeeecCCCCCCCCCCCcEEEE-ccCCcEEEEE-eC--------CeEEEEEcCC---ceEee-eeccCCCCCCeeE
Q 001311          923 EKQKNRFLQIPTGRTPTAQSDTRVQF-HQDQIHFLVV-HE--------TQLAIFETTK---LECVK-QWVPRESSAPITH  988 (1102)
Q Consensus       923 ~~~~~~~~~~~~~~~~~~~~v~~~~~-spdg~~l~~~-~d--------~~i~iwd~~~---~~~~~-~~~~~~h~~~v~~  988 (1102)
                      ....................-..+.+ ..+++.++.+ ..        ....+.+...   ..... ....-.+...-.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~  293 (387)
T d1k3ia3         214 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  293 (387)
T ss_dssp             EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccce
Confidence            43222111111111110111123333 3466766664 21        1233333321   11111 1111112233345


Q ss_pred             EEEcCCCcEEEEEeCCC-----------eEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEE-ecCCCCCEEEEEec
Q 001311          989 ATFSCDSQLVYACFLDA-----------TVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIA-AHPQEPNEFALGLS 1056 (1102)
Q Consensus       989 l~~spd~~~l~s~s~Dg-----------~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~-f~p~d~~~l~s~~~ 1056 (1102)
                      ....+||++++.|+.+.           ++.+||.++.+-.. +.........|        +.+ ..+ ||++++.|+.
T Consensus       294 ~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~-~~~~~~~R~~H--------s~a~l~~-dG~v~v~GG~  363 (387)
T d1k3ia3         294 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK-QNPNSIVRVYH--------SISLLLP-DGRVFNGGGG  363 (387)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE-CCCCSSCCCTT--------EEEEECT-TSCEEEEECC
T ss_pred             eeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEE-CCCCCCcccce--------EEEEECC-CCEEEEEeCC
Confidence            66678999999988531           57899988875432 22111111112        222 235 7899999885

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.046  Score=54.27  Aligned_cols=232  Identities=10%  Similarity=-0.006  Sum_probs=129.7

Q ss_pred             eEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEE-CCCeEEEEEcc
Q 001311          360 TLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYH  438 (1102)
Q Consensus       360 ~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~-~d~~v~vwd~~  438 (1102)
                      +||++-.  ..|+-.++.+.+...                    +......+.+++|.+..++|.-.. .++.|.--++.
T Consensus         3 fLl~s~~--~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~   60 (266)
T d1ijqa1           3 YLFFTNR--HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD   60 (266)
T ss_dssp             EEEEECB--SSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred             EEEEECC--CeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEec
Confidence            3555543  458888887654332                    223345678999999888777664 45667766665


Q ss_pred             CCceeeeEE-EeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccEEEEE
Q 001311          439 GGDEVRQHL-EIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFST  517 (1102)
Q Consensus       439 ~~~~~~~~~-~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~  517 (1102)
                      ......... .+......+..+++.+.++. +.++-...+.|.+.++........+.........+++++. +|.++++-
T Consensus        61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~  138 (266)
T d1ijqa1          61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTD  138 (266)
T ss_dssp             -------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEE
T ss_pred             CCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEec
Confidence            422111111 12233355778999877776 4455566789999998776655555555566777877542 33344443


Q ss_pred             -eCCCeEEEEEcCCCCCeeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCCCEEEEE-eCCCeEEEEECCCcc
Q 001311          518 -ALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQ  595 (1102)
Q Consensus       518 -s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~  595 (1102)
                       +..+.|...+++............                     .....+++++.++.|+-+ ...+.|...++....
T Consensus       139 ~~~~~~I~r~~~dGs~~~~l~~~~~---------------------~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~  197 (266)
T d1ijqa1         139 WGTPAKIKKGGLNGVDIYSLVTENI---------------------QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN  197 (266)
T ss_dssp             CSSSCEEEEEETTSCCEEEEECSSC---------------------SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             cCCCcceeEeccCCCceeccccccc---------------------ceeeEEEeeccccEEEEecCCcCEEEEEECCCCC
Confidence             223445555554322221111111                     233455666555556655 456788888986655


Q ss_pred             eEEEEcCCCCCCCcCeEEEcCCCCEEEEE-ECCCcEEEEEccCC
Q 001311          596 LLTSIDADGGLPASPRIRFNKDGCLLAVS-TNDNGIKILATSDG  638 (1102)
Q Consensus       596 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~  638 (1102)
                      ...............++++.  +..|... ..++.|...+..++
T Consensus       198 ~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g  239 (266)
T d1ijqa1         198 RKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTG  239 (266)
T ss_dssp             CEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred             EEEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECCCC
Confidence            44444333332234456665  3445544 45678877777766

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.53  E-value=0.028  Score=55.73  Aligned_cols=204  Identities=10%  Similarity=-0.013  Sum_probs=131.7

Q ss_pred             CCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee
Q 001311          807 EAVPCFALSKNDSYVMSAS--GGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS  884 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~  884 (1102)
                      ..+.+++|+...+.|....  ++.|+..++........+......+..+++....+++..+-...+.|.+.++.......
T Consensus        36 ~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            3467889998888887765  58899999876655555544446789999987445555555667899999987554333


Q ss_pred             eeccccccceeEEEecCCCEEEEEcCC-CcEEEE--EcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE--e
Q 001311          885 KLKGHSKRITGLAFSHALNVLVSSGAD-SQLCVW--SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV--H  959 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d~~~l~s~s~D-g~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~--~  959 (1102)
                      .+........+|++.|...+|.-.... +..+||  ++++...  .....  .+.    .....+++++.+..|..+  .
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--~~i~~--~~~----~~P~glaiD~~~~~lYw~d~~  187 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILAQ--DNL----GLPNGLTFDAFSSQLCWVDAG  187 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEEC--TTC----SCEEEEEEETTTTEEEEEETT
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--eeeee--ecc----cccceEEEeecCcEEEEEeCC
Confidence            333334567899999887777644322 333454  5554322  11111  111    244789999888877664  5


Q ss_pred             CCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          960 ETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       960 d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      .+.|...++........+.  + .....+|++. ++.+..+-...+.|...|..+++.+..+.
T Consensus       188 ~~~I~~~~~~g~~~~~v~~--~-~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~  246 (263)
T d1npea_         188 THRAECLNPAQPGRRKVLE--G-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFH  246 (263)
T ss_dssp             TTEEEEEETTEEEEEEEEE--C-CCSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEECCCCCeEEEEC--C-CCCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence            6789889987655443332  2 2345678875 34444454467889999999998876654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.51  E-value=0.019  Score=64.29  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccc-eeEEEecCCC-E
Q 001311          827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRI-TGLAFSHALN-V  904 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V-~~l~~s~d~~-~  904 (1102)
                      |.|.-||+.+++.+....... ....-.++- .+.+++.|+.||.++-+|..+|+.+-+++-..... .-+.+..||+ |
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy  515 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY  515 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cceEEEeCCCCeEeeeccCCC-CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            457788998888876644221 111112233 45678889999999999999999998775432211 2266777885 5


Q ss_pred             EEEEc
Q 001311          905 LVSSG  909 (1102)
Q Consensus       905 l~s~s  909 (1102)
                      |+..+
T Consensus       516 v~v~a  520 (560)
T d1kv9a2         516 VAIMA  520 (560)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            55443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.042  Score=54.62  Aligned_cols=208  Identities=6%  Similarity=-0.045  Sum_probs=128.5

Q ss_pred             CCCeeEEEEecCCCeEEEEe--CCeEEEEEcCCCc----eeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeec
Q 001311          806 EEAVPCFALSKNDSYVMSAS--GGKISLFNMMTFK----TMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRV  879 (1102)
Q Consensus       806 ~~~i~~l~~s~d~~~las~s--dg~I~iwd~~~~~----~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~  879 (1102)
                      ...+.+++|++..+.|....  .+.|.-.++....    ....+......+..+++.+..+++..+-...+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34577899999888887775  5677777665322    11223333456788999874555555556677899999876


Q ss_pred             ceeeeeeccccccceeEEEecCCCEEEEEc--CCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          880 DEVKSKLKGHSKRITGLAFSHALNVLVSSG--ADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       880 ~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s--~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      ......+........+|++.|...+|.-..  ..+.|...++++...   ..+.. .+.    .....+++++.+..|..
T Consensus       109 ~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~---~~l~~-~~~----~~p~gl~iD~~~~~lYw  180 (266)
T d1ijqa1         109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI---YSLVT-ENI----QWPNGITLDLLSGRLYW  180 (266)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE---EEEEC-SSC----SCEEEEEEETTTTEEEE
T ss_pred             ceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce---ecccc-ccc----ceeeEEEeeccccEEEE
Confidence            655444555556678899998766665443  334566666665332   11111 111    24578999998887777


Q ss_pred             E--eCCeEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEEEeC
Q 001311          958 V--HETQLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRIN 1022 (1102)
Q Consensus       958 ~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~~~~ 1022 (1102)
                      +  ..+.|...++...................++++. ++.++.+-..++.|+..+..++.....+.
T Consensus       181 ~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~~g~~~~~~~  246 (266)
T d1ijqa1         181 VDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA  246 (266)
T ss_dssp             EETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             ecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence            4  5678888888765443333322323456778876 34444444567888888888876655444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.46  E-value=0.0095  Score=67.14  Aligned_cols=79  Identities=10%  Similarity=0.085  Sum_probs=51.3

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeeccccccce-eEEEecCCC-E
Q 001311          827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRIT-GLAFSHALN-V  904 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~V~-~l~~s~d~~-~  904 (1102)
                      |.|.-||+.+++.+-..+.... ...=..+- .+.+|++|+.||.++.+|..+|+.+.+++-..+... -+.|..||+ |
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lst-agglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTT-AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCC-CCCceEEE-cCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            5688888888888766543221 11111222 566888899999999999999999987754322111 156677886 4


Q ss_pred             EEE
Q 001311          905 LVS  907 (1102)
Q Consensus       905 l~s  907 (1102)
                      ++.
T Consensus       535 v~v  537 (573)
T d1kb0a2         535 VSV  537 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.40  E-value=0.034  Score=62.52  Aligned_cols=79  Identities=15%  Similarity=0.076  Sum_probs=50.9

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ceeEEEecCCC-E
Q 001311          827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALN-V  904 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~-~  904 (1102)
                      |.|.-||+.+++.+-..... ..+..=.++- .+.+++.|+.||.++-+|..+|+.+-++.-.... -.-+.|..||+ |
T Consensus       453 G~l~A~D~~TG~~~W~~~~~-~~~~gg~lsT-agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQY  530 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER-FAVWGGTMAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES-SCCCSBCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ceEEEEeCCCCceecccCCC-CCCccceeEe-cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEE
Confidence            67888888888876554311 1111112233 4667888999999999999999999877533221 12256777886 4


Q ss_pred             EEE
Q 001311          905 LVS  907 (1102)
Q Consensus       905 l~s  907 (1102)
                      ++.
T Consensus       531 vav  533 (596)
T d1w6sa_         531 VAI  533 (596)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.37  E-value=0.036  Score=62.03  Aligned_cols=246  Identities=10%  Similarity=0.061  Sum_probs=139.1

Q ss_pred             CCCeEEEEeCCeEEEEEcCCCceeeeecCCC----CCeeEEEEecCCCcEEEEEe------CCCcEEEEEeecceeeeee
Q 001311          817 NDSYVMSASGGKISLFNMMTFKTMATFMPPP----PAATFLAFHPQDNNIIAIGM------DDSSIQIYNVRVDEVKSKL  886 (1102)
Q Consensus       817 d~~~las~sdg~I~iwd~~~~~~~~~~~~~~----~~i~~l~~sp~d~~~lasg~------~dg~v~vwd~~~~~~~~~l  886 (1102)
                      +++.++...|+.+.-.|.++++.........    ..++.--.-. ++.. +++.      .+|.|+-+|+.+|+.+-++
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~-~~~v-ivg~~~~~~~~~G~v~a~D~~TG~~~W~~  192 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTV-LMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEE-EEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEe-CCeE-EEeeccccccccCcEEEEECCCCcEEEEE
Confidence            3444444348999999999998876553221    1122111112 3444 4444      3678999999999987654


Q ss_pred             ccc-------------------------------------cccc-eeEEEecCCCEEEEEcCC----------------C
Q 001311          887 KGH-------------------------------------SKRI-TGLAFSHALNVLVSSGAD----------------S  912 (1102)
Q Consensus       887 ~~h-------------------------------------~~~V-~~l~~s~d~~~l~s~s~D----------------g  912 (1102)
                      ...                                     .+.+ ...++.++..++..+..+                .
T Consensus       193 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~  272 (571)
T d2ad6a1         193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             eccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCcccccccccccccc
Confidence            321                                     0112 224556666666554442                3


Q ss_pred             cEEEEEcCCCcccceeeeecCCCCC--CCCCCCcEEEEccCCcE---EEE-EeCCeEEEEEcCCceEeeeeccCC-----
Q 001311          913 QLCVWSSDGWEKQKNRFLQIPTGRT--PTAQSDTRVQFHQDQIH---FLV-VHETQLAIFETTKLECVKQWVPRE-----  981 (1102)
Q Consensus       913 ~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~spdg~~---l~~-~~d~~i~iwd~~~~~~~~~~~~~~-----  981 (1102)
                      .+.-.|+++++..-.. ........  ..........+..+|+.   ++. +.+|.++++|..+|+.+.......     
T Consensus       273 svvAld~~TG~~~W~~-q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         273 TIWGRDLDTGMAKWGY-QKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             EEEEEETTTCCEEEEE-ESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             ceeeeeccchhheecc-cccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            4666777777643211 11111100  00112233333445543   223 478999999999998764321110     


Q ss_pred             ------------------------------C-C-CCeeEEEEcCCCcEEEEEeCC-------------------------
Q 001311          982 ------------------------------S-S-APITHATFSCDSQLVYACFLD------------------------- 1004 (1102)
Q Consensus       982 ------------------------------h-~-~~v~~l~~spd~~~l~s~s~D------------------------- 1004 (1102)
                                                    . . ..-...+++|+..+++....+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                          0 0 001135677877776654432                         


Q ss_pred             ------------CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccceEEEecCCCCCEEEEEecCCcEEEEeccCCCccc
Q 001311         1005 ------------ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKW 1072 (1102)
Q Consensus      1005 ------------g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~~v~f~p~d~~~l~s~~~Dg~v~vW~~~~~~~~~ 1072 (1102)
                                  |.|.-+|+.+|+.+-+.......-.+       +  ++.   .+.++++|+.||.++.+|.++++..|
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g-------~--l~T---agglVf~G~~dg~l~A~Da~tGe~lW  499 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGG-------T--LYT---KGGLVWYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSB-------C--EEE---TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcc-------e--eEe---cCCEEEEECCCCeEEEEECCCCcEEE
Confidence                        46888899999988776522211111       1  221   25788899999999999999999998


Q ss_pred             ccCCC
Q 001311         1073 GVPPP 1077 (1102)
Q Consensus      1073 ~~~~~ 1077 (1102)
                      +..-+
T Consensus       500 ~~~l~  504 (571)
T d2ad6a1         500 NFKMP  504 (571)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            88555

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.096  Score=50.97  Aligned_cols=243  Identities=9%  Similarity=0.080  Sum_probs=145.2

Q ss_pred             eEEEEecCCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECC
Q 001311          350 MSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSR  429 (1102)
Q Consensus       350 ~~v~~spdg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d  429 (1102)
                      .+.-.+|..+ ++|.=+ ..++.|+|+++.+++....+                    ...|..=.|-.+. .|+..+ +
T Consensus        66 dsAIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~  121 (327)
T d1utca2          66 DSAIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-D  121 (327)
T ss_dssp             SEEEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSSS-EEEEEC-S
T ss_pred             hhhhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCCC-EEEEEc-C
Confidence            3455678877 455433 46899999999998875332                    2366666676544 444443 4


Q ss_pred             CeEEEEEccCCceeeeEEEeeccc----cCEEEEEEcCCCCeeEEEEe------cCCCcEEEEeCCCCeeeEEeecCCCC
Q 001311          430 HIVQIYSYHGGDEVRQHLEIDAHV----GGVNDIAFSHPNKQLCVITC------GDDKTIKVWDATNGAKQYIFEGHEAP  499 (1102)
Q Consensus       430 ~~v~vwd~~~~~~~~~~~~l~~h~----~~V~~v~~s~d~~~~~l~s~------~~d~~i~vWd~~~~~~~~~~~~h~~~  499 (1102)
                      ..|+=|++++...  +.+.+..|.    ..|..-..+++.+. ++++|      +-.|.+.+|..+. +.-+.++||.+.
T Consensus       122 taVYHW~~~g~s~--P~k~fdR~~~L~~~QIInY~~d~~~kW-~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~  197 (327)
T d1utca2         122 NAVYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKW-LLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAAS  197 (327)
T ss_dssp             SEEEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSCE-EEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEE
T ss_pred             CceEEEcccCCCC--chhhhhhcccccCceEEEEEECCCCCE-EEEEeEecCCCceeEEEEEEEecc-CcCccccceeee
Confidence            5699999976443  223344443    35777777888885 33332      1236788998554 456778888766


Q ss_pred             eEEEeeeecCCc-cEEEEEe---CCCeEEEEEcCCCCC-eeeecCCCCeeeEEEEccCCceeeeccccCceeEEEEcCCC
Q 001311          500 VYSVCPHHKENI-QFIFSTA---LDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQGFRKRSLGVVQFDTTK  574 (1102)
Q Consensus       500 v~~v~~~~~~~~-~~l~s~s---~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~~~~~~~i~~~~~~~~~  574 (1102)
                      -..+.+...... .+++.+.   ..+.+++-++..... ...+   ......+.|.|+..       +.-..++.+++.-
T Consensus       198 F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f---~kk~vdi~fppea~-------~DFPvamqvs~ky  267 (327)
T d1utca2         198 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPF---PKKAVDVFFPPEAQ-------NDFPVAMQISEKH  267 (327)
T ss_dssp             EEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCC---CCEEEECCCCTTCT-------TCCEEEEEEETTT
T ss_pred             eEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCC---cceeEEEECCcccc-------CCcEEEEEeeccC
Confidence            555543211111 2333322   225778887765321 1111   12233444555433       2244456777777


Q ss_pred             CEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEE
Q 001311          575 NRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKI  632 (1102)
Q Consensus       575 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i  632 (1102)
                      ..++..+.-|.|++||++++.++..-+....  .|...+-+.+..-+++...+|.|..
T Consensus       268 giiyviTK~G~i~lyDleTgt~i~~nRIs~~--~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         268 DVVFLITKYGYIHLYDLETGTCIYMNRISGE--TIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             TEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             CEEEEEecCcEEEEEEcccccEEEEeecCCC--ceEEeccCCCCceEEEECCCCeEEE
Confidence            8899999999999999999999887765443  3443444444445555556776654

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.11  Score=51.37  Aligned_cols=203  Identities=11%  Similarity=0.052  Sum_probs=117.9

Q ss_pred             CCCCCeEEEEEccCCCeEEEEE-CCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeC
Q 001311          406 DPGVSVNRVIWSPDGSLFGVAY-SRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDA  484 (1102)
Q Consensus       406 ~h~~~V~~l~~spdg~~las~~-~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~  484 (1102)
                      .+...+.+++|.+..+.|.-.. .++.|+..++.++....   .+......+.++++..-+.. +.++-...+.|.+.++
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEec
Confidence            3445688899998877777664 56788888887765332   13233356889999876664 4455666789999998


Q ss_pred             CCCeeeEEeecCCCCeEEEeeeecCCccEEEEEeCCCeEEEE--EcCCCCCeeeecCCCCeeeEEEEccCCceeeecccc
Q 001311          485 TNGAKQYIFEGHEAPVYSVCPHHKENIQFIFSTALDGKIKAW--LYDNLGSRVDYEAPGRWCTTMAYSADGTRTYQGFRK  562 (1102)
Q Consensus       485 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~dg~i~~w--d~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~~~~~~  562 (1102)
                      ........+.........+++.+. .|.++.+-...+..++|  +++..........                     .-
T Consensus       109 dg~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~---------------------~~  166 (263)
T d1npea_         109 DGTQRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQD---------------------NL  166 (263)
T ss_dssp             TSCSCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECT---------------------TC
T ss_pred             CCceEEEEecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeee---------------------cc
Confidence            765543334434456777877543 33333343222232333  3332222111111                     11


Q ss_pred             CceeEEEEcCCCCEEEEE-eCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEE-CCCcEEEEEccCCc
Q 001311          563 RSLGVVQFDTTKNRFLAA-GDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVST-NDNGIKILATSDGI  639 (1102)
Q Consensus       563 ~~i~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~  639 (1102)
                      .....+++++.++.|+.+ ...+.|...|+........+....+   ..++++.  +..|.... ..+.|...|..++.
T Consensus       167 ~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~---P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~  240 (263)
T d1npea_         167 GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY---PFAVTSY--GKNLYYTDWKTNSVIAMDLAISK  240 (263)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS---EEEEEEE--TTEEEEEETTTTEEEEEETTTTE
T ss_pred             cccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC---cEEEEEE--CCEEEEEECCCCEEEEEECCCCc
Confidence            233456666666666555 4577899899876554444443222   3467765  44555444 56788888887773

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.22  E-value=0.094  Score=55.36  Aligned_cols=232  Identities=9%  Similarity=0.034  Sum_probs=118.9

Q ss_pred             EEEEccCCceEEEeecC-ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEEecCCCeEE
Q 001311          744 RLIFTNSGNAILALASN-AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFALSKNDSYVM  822 (1102)
Q Consensus       744 ~~~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~s~d~~~la  822 (1102)
                      ..++.++|+.++.++.+ ..+.+||..+.               .|....         .......-..++..+||++++
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~---------------~w~~~~---------~~~~~r~~~~~~~~~dG~v~v  135 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSD---------------SWIPGP---------DMQVARGYQSSATMSDGRVFT  135 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGT---------------EEEECC---------CCSSCCSSCEEEECTTSCEEE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccC---------------cccccc---------cccccccccceeeecCCceee
Confidence            45678899888877765 57778876432               121100         001122234677788999988


Q ss_pred             EEe-C------CeEEEEEcCCCceeeee---------cCCC-----CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecce
Q 001311          823 SAS-G------GKISLFNMMTFKTMATF---------MPPP-----PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDE  881 (1102)
Q Consensus       823 s~s-d------g~I~iwd~~~~~~~~~~---------~~~~-----~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~  881 (1102)
                      .++ +      ..+.+||..+.+-...-         ..+.     ..-..+...+ ++++++.+..++.+.+++..+..
T Consensus       136 ~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~~~~g~~~~~~~~~~~~~~~  214 (387)
T d1k3ia3         136 IGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQAGPSTAMNWYYTSGSGD  214 (387)
T ss_dssp             ECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEECCSSSEEEEEECSTTCE
T ss_pred             eccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeC-CCCEEEecCcCCcEEecCcccCc
Confidence            886 2      35899998765422110         0000     0011122234 67777777777777777776544


Q ss_pred             eeee--ecc----ccccc--eeEEE-ecCCCEEEEEcCCC--------cEEEEEcCCCcccceeeeecCCCCCCCCCCCc
Q 001311          882 VKSK--LKG----HSKRI--TGLAF-SHALNVLVSSGADS--------QLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDT  944 (1102)
Q Consensus       882 ~~~~--l~~----h~~~V--~~l~~-s~d~~~l~s~s~Dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~  944 (1102)
                      ....  ...    +....  .++.+ ..+++.++.++...        ...+.++.............  ...+....-.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~r~~~  292 (387)
T d1k3ia3         215 VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS--NGLYFARTFH  292 (387)
T ss_dssp             EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT--TCCSSCCBSC
T ss_pred             EeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeec--cccccccccc
Confidence            3211  110    11111  12222 23567777776421        23333333221111111111  1111112234


Q ss_pred             EEEEccCCcEEEEEe-C-----------CeEEEEEcCCceEeeeeccCCCCCCeeE-EEEcCCCcEEEEEeC
Q 001311          945 RVQFHQDQIHFLVVH-E-----------TQLAIFETTKLECVKQWVPRESSAPITH-ATFSCDSQLVYACFL 1003 (1102)
Q Consensus       945 ~~~~spdg~~l~~~~-d-----------~~i~iwd~~~~~~~~~~~~~~h~~~v~~-l~~spd~~~l~s~s~ 1003 (1102)
                      ..+..+||+.++++. +           ..+.+||..+.+....-.. .+...-.+ ..+.+||+.|+.|+.
T Consensus       293 ~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~-~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         293 TSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN-SIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             EEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC-SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC-CCcccceEEEEECCCCEEEEEeCC
Confidence            566778999888842 1           1578999988765433211 11222223 346799999999884

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.19  E-value=0.089  Score=58.98  Aligned_cols=80  Identities=11%  Similarity=0.110  Sum_probs=53.9

Q ss_pred             CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeecccccc-ceeEEEecCCC-E
Q 001311          827 GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKR-ITGLAFSHALN-V  904 (1102)
Q Consensus       827 g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~~h~~~-V~~l~~s~d~~-~  904 (1102)
                      |.|.-+|+.+++.+.....+.. +..-.++. .+.++++|+.||.++-+|..+|+.+-+++-.... -.-+.|..||+ |
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qY  543 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQY  543 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCCC-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            6788889998888776653322 22112233 5668888999999999999999999877543221 12267788885 4


Q ss_pred             EEEE
Q 001311          905 LVSS  908 (1102)
Q Consensus       905 l~s~  908 (1102)
                      ++..
T Consensus       544 v~i~  547 (582)
T d1flga_         544 LGVT  547 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.17  E-value=0.056  Score=58.25  Aligned_cols=248  Identities=10%  Similarity=0.029  Sum_probs=126.2

Q ss_pred             CeeEEEEecCCCeEEEEEecCC----eEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeE
Q 001311          348 SPMSMDFHPVQQTLLLVGTNVG----DIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLF  423 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~d~----~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~l  423 (1102)
                      .+..+++||||++++++-+.+|    .|++.|+.+++.+...                  +.  ......++|++|++.|
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~------------------i~--~~~~~~~~W~~D~~~~  185 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDV------------------LE--RVKFSCMAWTHDGKGM  185 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEE------------------EE--EECSCCEEECTTSSEE
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceecccc------------------cc--cccccceEEcCCCCEE
Confidence            4456788999998776655555    6999999999876531                  11  0112468999999988


Q ss_pred             EEEECC----------------CeEEEEEccCCceeeeEEEeeccc--cCEEEEEEcCCCCeeEEEEec-CCCcEEEE--
Q 001311          424 GVAYSR----------------HIVQIYSYHGGDEVRQHLEIDAHV--GGVNDIAFSHPNKQLCVITCG-DDKTIKVW--  482 (1102)
Q Consensus       424 as~~~d----------------~~v~vwd~~~~~~~~~~~~l~~h~--~~V~~v~~s~d~~~~~l~s~~-~d~~i~vW--  482 (1102)
                      +....|                ..|..|.+.+...-. ...+....  ..+..+..+.|++.+++.+.. .+....+|  
T Consensus       186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~  264 (430)
T d1qfma1         186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC  264 (430)
T ss_dssp             EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred             EEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence            765433                257777777654321 11233333  346678889999963332332 33344444  


Q ss_pred             eCCCCe--------eeEEeecCCCCeEEEeeeecCCccEEEEEeC---CCeEEEEEcCCCCCeeeecCCCCeeeEEEEcc
Q 001311          483 DATNGA--------KQYIFEGHEAPVYSVCPHHKENIQFIFSTAL---DGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSA  551 (1102)
Q Consensus       483 d~~~~~--------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~s~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~  551 (1102)
                      |+....        ....+........-+..  .++ .+++....   ++.|...++.......         .      
T Consensus       265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~Tn~~a~~~~L~~~~~~~~~~~~---------w------  326 (430)
T d1qfma1         265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--EGT-VFTFKTNRHSPNYRLINIDFTDPEESK---------W------  326 (430)
T ss_dssp             EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--ETT-EEEEEECTTCTTCEEEEEETTBCCGGG---------C------
T ss_pred             eCCCcccccccccceeEeecccccceEEEec--CCc-eeecccCcccccceeEEecCCCCcccc---------c------
Confidence            433221        11222222222322221  121 23332222   3455555554432110         0      


Q ss_pred             CCceeeeccccCceeEEEEcCCCCEEEEEe-CC--CeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECC-
Q 001311          552 DGTRTYQGFRKRSLGVVQFDTTKNRFLAAG-DD--FSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTND-  627 (1102)
Q Consensus       552 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-  627 (1102)
                         ..+...+...+..-.+...+++|+... .+  ..|+++++.++..........  ..+..+...++...+.....+ 
T Consensus       327 ---~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~  401 (430)
T d1qfma1         327 ---KVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSF  401 (430)
T ss_dssp             ---EEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECS
T ss_pred             ---eEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCC
Confidence               011111111122222222334555443 44  458889998887655544332  244444444555544443322 


Q ss_pred             ---CcEEEEEccCCc
Q 001311          628 ---NGIKILATSDGI  639 (1102)
Q Consensus       628 ---g~i~iwd~~~~~  639 (1102)
                         .++.-+|+.++.
T Consensus       402 ~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         402 LSPGIIYHCDLTKEE  416 (430)
T ss_dssp             SCCCEEEEEETTSSS
T ss_pred             CCCCeEEEEECCCCC
Confidence               678888888773

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.16  Score=49.31  Aligned_cols=233  Identities=10%  Similarity=0.099  Sum_probs=130.3

Q ss_pred             EEcCCCCEEEEEeCCCeEEEEECCCcceEEEEcCCCCCCCcCeEEEcCCCCEEEEEECCCcEEEEEccCCccceeecccc
Q 001311          569 QFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPASPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENL  648 (1102)
Q Consensus       569 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  648 (1102)
                      -.+|..+.++.-+ ..++.+||+++.+.+..+.....   |.--.|-.+ +.|+..+ +..|+-|++.....+.+.+..|
T Consensus        69 IMhP~~~IiALra-g~~LQiFnletK~klks~~~~e~---VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          69 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCCC---cEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            3455555555544 56899999999999988876654   555556544 4455554 3689999986543444444322


Q ss_pred             cccccccCCCCCCCcccchhhhHhhhhccccccccccccccCCCCCCccccCCCCccccccCCCccceEecccCCCCCcc
Q 001311          649 AYDASRTSENSKPTISPISAAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQC  728 (1102)
Q Consensus       649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~~w~~~~~~~~~~~  728 (1102)
                      ...                                                                             
T Consensus       143 ~~L-----------------------------------------------------------------------------  145 (327)
T d1utca2         143 SSL-----------------------------------------------------------------------------  145 (327)
T ss_dssp             GGG-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            211                                                                             


Q ss_pred             ccccCCCcccccceEEEEEccCCceEEEeec-------CceEEeeeccccccC-CCCcccccccceeccCCCcccccccc
Q 001311          729 RSLRLPENLRATKISRLIFTNSGNAILALAS-------NAIHLLWKWQRTERN-SSGKATASVAPQLWQPPSGIMMTNDV  800 (1102)
Q Consensus       729 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-------dg~i~iw~~~~~~~~-~~~~~~~~~~~~~w~~~~~~~~~~~~  800 (1102)
                               ....|.....+++.++++..|-       .|.+.+|..+..... .+|...             ......+
T Consensus       146 ---------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa-------------~F~~~~~  203 (327)
T d1utca2         146 ---------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA-------------SFAQFKM  203 (327)
T ss_dssp             ---------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE-------------EEEEECC
T ss_pred             ---------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceee-------------eeEEEEc
Confidence                     2345666777777777665542       256666665332110 011110             0111111


Q ss_pred             CCCCCCCCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCc---ee---e--ee--c--CCCCCeeEEEEecCCCcEEEEEe
Q 001311          801 TDSNPEEAVPCFALSKNDSYVMSAS-GGKISLFNMMTFK---TM---A--TF--M--PPPPAATFLAFHPQDNNIIAIGM  867 (1102)
Q Consensus       801 ~~~~~~~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~---~~---~--~~--~--~~~~~i~~l~~sp~d~~~lasg~  867 (1102)
                      .+  ...+..-++|...      +. .++++|.++....   ..   +  .+  .  ...+-..++..|+ .-.++..-+
T Consensus       204 ~g--~~~~~~lf~fa~r------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygiiyviT  274 (327)
T d1utca2         204 EG--NAEESTLFCFAVR------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLIT  274 (327)
T ss_dssp             TT--CSSCEEEEEEEEE------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEEEEEE
T ss_pred             CC--CCCCceEEEEEEC------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEEEEEe
Confidence            11  1111112222111      11 3678999886521   11   1  11  1  1133467888888 666888889


Q ss_pred             CCCcEEEEEeecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEE
Q 001311          868 DDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLC  915 (1102)
Q Consensus       868 ~dg~v~vwd~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~  915 (1102)
                      .-|.|++||+.++.++..-+-..+.|..-+-..+..-++....+|.|.
T Consensus       275 K~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         275 KYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            999999999999998876655556666555555544555555666554

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.42  E-value=0.68  Score=49.20  Aligned_cols=243  Identities=8%  Similarity=0.054  Sum_probs=128.7

Q ss_pred             cceEEEEEccCCceEEEeec-C----ceEEeeeccccccCCCCcccccccceeccCCCccccccccCCCCCCCCeeEEEE
Q 001311          740 TKISRLIFTNSGNAILALAS-N----AIHLLWKWQRTERNSSGKATASVAPQLWQPPSGIMMTNDVTDSNPEEAVPCFAL  814 (1102)
Q Consensus       740 ~~i~~~~~s~~g~~l~~~~~-d----g~i~iw~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~i~~l~~  814 (1102)
                      -.+..++++|++++++.+-+ +    ..++++|+                      .+|+.+...+.    ......++|
T Consensus       125 ~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl----------------------~tg~~~~~~i~----~~~~~~~~W  178 (430)
T d1qfma1         125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKV----------------------DGAKELPDVLE----RVKFSCMAW  178 (430)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEET----------------------TTTEEEEEEEE----EECSCCEEE
T ss_pred             ceecceEecCCCCEEEEEeccccCchheeEEecc----------------------Ccceecccccc----cccccceEE
Confidence            34556788999998875543 2    34555554                      55554332221    112256889


Q ss_pred             ecCCCeEEEEe-C----------------CeEEEEEcCCCcee--eeecCCC--CCeeEEEEecCCCcEEEEEeC---CC
Q 001311          815 SKNDSYVMSAS-G----------------GKISLFNMMTFKTM--ATFMPPP--PAATFLAFHPQDNNIIAIGMD---DS  870 (1102)
Q Consensus       815 s~d~~~las~s-d----------------g~I~iwd~~~~~~~--~~~~~~~--~~i~~l~~sp~d~~~lasg~~---dg  870 (1102)
                      ++|++.|+... +                ..|..+.+.+...-  ..+....  ..+..+..+. ++++++....   +.
T Consensus       179 ~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~-d~~~l~i~~~~~~~~  257 (430)
T d1qfma1         179 THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDP  257 (430)
T ss_dssp             CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSS
T ss_pred             cCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC-CcceeeEEeeccCCc
Confidence            99999877543 2                25778887765432  2333332  3356677788 7887765432   33


Q ss_pred             cEEEE--Eeeccee--------eeeeccccccceeEEEecCCCEEEEEcC---CCcEEEEEcCCCcccceeeeecCCCCC
Q 001311          871 SIQIY--NVRVDEV--------KSKLKGHSKRITGLAFSHALNVLVSSGA---DSQLCVWSSDGWEKQKNRFLQIPTGRT  937 (1102)
Q Consensus       871 ~v~vw--d~~~~~~--------~~~l~~h~~~V~~l~~s~d~~~l~s~s~---Dg~i~vwd~~~~~~~~~~~~~~~~~~~  937 (1102)
                      ...+|  |+.....        ...+......+ ....+.++.+++....   ++.|...++..........+-....  
T Consensus       258 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~--  334 (430)
T d1qfma1         258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE--  334 (430)
T ss_dssp             CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCS--
T ss_pred             cEEEEEeeCCCcccccccccceeEeecccccce-EEEecCCceeecccCcccccceeEEecCCCCccccceEEecccC--
Confidence            44454  4432110        11112112222 2222233334444332   3567777777654433332221111  


Q ss_pred             CCCCCCcEEEEccCCcEEEEE--eCC--eEEEEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC----CeEEE
Q 001311          938 PTAQSDTRVQFHQDQIHFLVV--HET--QLAIFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD----ATVCV 1009 (1102)
Q Consensus       938 ~~~~~v~~~~~spdg~~l~~~--~d~--~i~iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D----g~I~v 1009 (1102)
                         ..+..-.++..+.+|+..  .++  .|++++..++........  ..+.|..+...++...+...-.+    .+++-
T Consensus       335 ---~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~--~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~  409 (430)
T d1qfma1         335 ---KDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPL--EVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYH  409 (430)
T ss_dssp             ---SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECC--CSSEEEEEECCTTCSEEEEEEECSSCCCEEEE
T ss_pred             ---cceeeeEEEEECCEEEEEEEcCCEeEEEEEECCCCcEEEecCC--CCceEeeccCCCCCCEEEEEEcCCCCCCeEEE
Confidence               123444555555666653  444  688999998887665442  24556666656665544433222    67999


Q ss_pred             EEcCCcee
Q 001311         1010 FSAANLKL 1017 (1102)
Q Consensus      1010 wd~~~~~~ 1017 (1102)
                      ||+.+++.
T Consensus       410 ~Dl~t~~~  417 (430)
T d1qfma1         410 CDLTKEEL  417 (430)
T ss_dssp             EETTSSSC
T ss_pred             EECCCCCc
Confidence            99998854

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.0016  Score=57.67  Aligned_cols=78  Identities=15%  Similarity=0.305  Sum_probs=64.2

Q ss_pred             hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCCc----hhHH---HHHH
Q 001311           60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGDT----KSAR---SIML  132 (1102)
Q Consensus        60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~----~~~R---~~l~  132 (1102)
                      ++|.|+-+.||||+..|+.++|..++.+.-..+...+.+++++|..+....++.+++....++..    ..+|   ..|+
T Consensus        45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl  124 (149)
T d2nxpa1          45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK  124 (149)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHH
Confidence            99999999999999999999999999987666677789999999999999999888887777762    3333   4555


Q ss_pred             HHHHh
Q 001311          133 VELKK  137 (1102)
Q Consensus       133 ~~l~~  137 (1102)
                      ..|++
T Consensus       125 ~~L~~  129 (149)
T d2nxpa1         125 RHLQE  129 (149)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            55543

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=95.11  E-value=0.0034  Score=54.00  Aligned_cols=77  Identities=14%  Similarity=0.279  Sum_probs=58.6

Q ss_pred             hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC----chhHH---HHHH
Q 001311           60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD----TKSAR---SIML  132 (1102)
Q Consensus        60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~~~~R---~~l~  132 (1102)
                      ++|+++-+.||||+..|..++|..++.+.-..+.. +.+++++|+.+.+..+..+++....++.    ...+|   ..|+
T Consensus        27 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~~-~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s~~lL~  105 (131)
T d2j4ba1          27 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYN-KSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI  105 (131)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHHH-HHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHHHHHHH
Confidence            99999999999999999999999999975444433 6889999999998888887777665554    22333   5556


Q ss_pred             HHHHh
Q 001311          133 VELKK  137 (1102)
Q Consensus       133 ~~l~~  137 (1102)
                      ..|++
T Consensus       106 ~fL~~  110 (131)
T d2j4ba1         106 NFLEE  110 (131)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.88  E-value=2  Score=43.37  Aligned_cols=170  Identities=14%  Similarity=0.114  Sum_probs=92.9

Q ss_pred             CeeEEEEecCCCeEEEEEec-----------CCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEE
Q 001311          348 SPMSMDFHPVQQTLLLVGTN-----------VGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIW  416 (1102)
Q Consensus       348 ~v~~v~~spdg~~llasg~~-----------d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~  416 (1102)
                      ....++..|||..+++||-.           .|.|.++|+.+.+.... .+.+   .  ........+..|     .+.+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~-~l~~---~--~~~~~~~~f~Ph-----Gi~l  104 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVS-ELEI---I--GNTLDISSFNPH-----GIST  104 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEE-ECEE---E--CSSSCGGGCCEE-----EEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcce-EEEe---c--CCCCCCcceecc-----ceeE
Confidence            45678899999876666522           37888888876533221 0000   0  000000012222     3333


Q ss_pred             --ccCCC-eEEEEE---CCCeEEEEEccCCc-eeeeEEEeec-cccCEEEEEEcCCCCeeEEEEec--C-----------
Q 001311          417 --SPDGS-LFGVAY---SRHIVQIYSYHGGD-EVRQHLEIDA-HVGGVNDIAFSHPNKQLCVITCG--D-----------  475 (1102)
Q Consensus       417 --spdg~-~las~~---~d~~v~vwd~~~~~-~~~~~~~l~~-h~~~V~~v~~s~d~~~~~l~s~~--~-----------  475 (1102)
                        .+||+ +|++..   ...+|.+|++.... .+....++.. .....+.|++..++.  +++|-.  .           
T Consensus       105 ~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~  182 (340)
T d1v04a_         105 FIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMH  182 (340)
T ss_dssp             EECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHH
T ss_pred             EEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHh
Confidence              45676 455553   45689999986543 2322223322 224578999999998  677721  1           


Q ss_pred             --CCcEEEEeCCCCeeeEEeecCCCCeEEEeeeecCCccE-EEEEeCCCeEEEEEcCCCCC
Q 001311          476 --DKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQF-IFSTALDGKIKAWLYDNLGS  533 (1102)
Q Consensus       476 --d~~i~vWd~~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~s~dg~i~~wd~~~~~~  533 (1102)
                        -++..+|....++...... .-..-+.|+++  +++++ +++-+..+.|+.|++.....
T Consensus       183 ~~~~~g~v~~~~~~~~~~~~~-~l~~pNGI~~s--~d~~~lyVa~t~~~~i~~y~~~~~~~  240 (340)
T d1v04a_         183 LGLAWSFVTYYSPNDVRVVAE-GFDFANGINIS--PDGKYVYIAELLAHKIHVYEKHANWT  240 (340)
T ss_dssp             TTCCCEEEEEECSSCEEEEEE-EESSEEEEEEC--TTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             hcCCceeEEEEcCCceEEEcC-CCCccceeEEC--CCCCEEEEEeCCCCeEEEEEeCCCcc
Confidence              1234455444444333333 34557788875  44444 45556788999999876443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.54  E-value=2.8  Score=42.19  Aligned_cols=200  Identities=8%  Similarity=0.139  Sum_probs=114.2

Q ss_pred             cCCCeEEEEe-CCeEEEEEcCCCceeeeecCCCCCeeEEEEec----C-CCcEEEEEeC--C--CcEEEEEeec-ceeee
Q 001311          816 KNDSYVMSAS-GGKISLFNMMTFKTMATFMPPPPAATFLAFHP----Q-DNNIIAIGMD--D--SSIQIYNVRV-DEVKS  884 (1102)
Q Consensus       816 ~d~~~las~s-dg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp----~-d~~~lasg~~--d--g~v~vwd~~~-~~~~~  884 (1102)
                      |+..+++... .+.|++||+. |+.+..+.  .+.+..|..-.    . +..-+++++.  +  .+|.+|.+.. ...+.
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            3444555555 5669999985 67776664  35566655432    0 2223455552  2  3688888763 22233


Q ss_pred             eeccc-------cccceeEEE--ecC-CC-EEEEEcCCCcEEEEEcCCCcc--cceeeeecCCCCCCCCCCCcEEEEccC
Q 001311          885 KLKGH-------SKRITGLAF--SHA-LN-VLVSSGADSQLCVWSSDGWEK--QKNRFLQIPTGRTPTAQSDTRVQFHQD  951 (1102)
Q Consensus       885 ~l~~h-------~~~V~~l~~--s~d-~~-~l~s~s~Dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~spd  951 (1102)
                      .+...       ...+..+|+  ++. |. +++....+|.+..|.+.....  .....+..+...    ..+..+++..+
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~----~q~EGCVvDde  190 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMN----SQTEGMAADDE  190 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECS----SCEEEEEEETT
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCC----CccceEEEeCC
Confidence            33221       124778888  554 44 566777889999887743221  122222222211    36789999999


Q ss_pred             CcEEEEEe-CCeEEEEEcC-----CceEeeeeccCCCCCCeeEEEEcC--CCc-EE-EEEeCCCeEEEEEcCC-ceeEEE
Q 001311          952 QIHFLVVH-ETQLAIFETT-----KLECVKQWVPRESSAPITHATFSC--DSQ-LV-YACFLDATVCVFSAAN-LKLRCR 1020 (1102)
Q Consensus       952 g~~l~~~~-d~~i~iwd~~-----~~~~~~~~~~~~h~~~v~~l~~sp--d~~-~l-~s~s~Dg~I~vwd~~~-~~~~~~ 1020 (1102)
                      ...|.++. +..|+.++..     .+..+...........+-.|++-.  ++. || +|.-.|.+..|||..+ .+.+..
T Consensus       191 ~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~  270 (353)
T d1h6la_         191 YGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVAD  270 (353)
T ss_dssp             TTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccce
Confidence            88888884 4455555543     122332222222366788887543  333 44 4444678999999876 477766


Q ss_pred             eC
Q 001311         1021 IN 1022 (1102)
Q Consensus      1021 ~~ 1022 (1102)
                      |.
T Consensus       271 F~  272 (353)
T d1h6la_         271 FQ  272 (353)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=94.52  E-value=1.2  Score=45.00  Aligned_cols=206  Identities=15%  Similarity=0.222  Sum_probs=112.1

Q ss_pred             cCCCeEEEEECCCeEEEEEccCCceeeeEEEeeccccCEEEEEEcC----CCCeeEEEEec--CC--CcEEEEeCC-CCe
Q 001311          418 PDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDIAFSH----PNKQLCVITCG--DD--KTIKVWDAT-NGA  488 (1102)
Q Consensus       418 pdg~~las~~~d~~v~vwd~~~~~~~~~~~~l~~h~~~V~~v~~s~----d~~~~~l~s~~--~d--~~i~vWd~~-~~~  488 (1102)
                      |+..+++....++-|.+||++ |+.+..   +  ..+.++.|..-.    +++..-++.++  .+  .+|.+|.+. ...
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~---~--~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~  111 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHS---Y--HTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEE---C--CSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTT
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEe---c--ccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccc
Confidence            456677777777779999996 554542   2  235566555432    23321233333  22  357888775 333


Q ss_pred             eeEEeecC-------CCCeEEEeeeecC-Cc-cEEEEEeCCCeEEEEEcCCCCC-eeeecCCCCeeeEEEEccCCceeee
Q 001311          489 KQYIFEGH-------EAPVYSVCPHHKE-NI-QFIFSTALDGKIKAWLYDNLGS-RVDYEAPGRWCTTMAYSADGTRTYQ  558 (1102)
Q Consensus       489 ~~~~~~~h-------~~~v~~v~~~~~~-~~-~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~~~~  558 (1102)
                      .+..+...       ...+..+|+..++ ++ .+++....+|.+..|.+...+. ....    ..+..+.+         
T Consensus       112 ~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~----~lvr~f~~---------  178 (353)
T d1h6la_         112 TLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISG----KKVRAFKM---------  178 (353)
T ss_dssp             EEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEE----EEEEEEEC---------
T ss_pred             ccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceee----EeeeccCC---------
Confidence            34444321       2247788874443 33 3677778899999997743221 1100    01111111         


Q ss_pred             ccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCC-----cceEEEEcCCCCCCCcCeEEEcC--C--CCEEEEEECCCc
Q 001311          559 GFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDS-----VQLLTSIDADGGLPASPRIRFNK--D--GCLLAVSTNDNG  629 (1102)
Q Consensus       559 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~s~--~--~~~l~~~~~dg~  629 (1102)
                         ....-.|.++...+.|+.+-++.-|+.++++.     +..+....+..-...+-.+++-.  +  |-+|++.-.+++
T Consensus       179 ---~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~  255 (353)
T d1h6la_         179 ---NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSS  255 (353)
T ss_dssp             ---SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             ---CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCe
Confidence               12455677777778888888887776666542     22222222222233556666543  3  344444445788


Q ss_pred             EEEEEccCCccceeec
Q 001311          630 IKILATSDGIRLLRTF  645 (1102)
Q Consensus       630 i~iwd~~~~~~~~~~~  645 (1102)
                      ..+||.......+..+
T Consensus       256 f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         256 YAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEEESSTTCCEEEEE
T ss_pred             EEEEecCCCccccceE
Confidence            9999987654444443

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.00  E-value=3  Score=44.09  Aligned_cols=102  Identities=19%  Similarity=0.216  Sum_probs=60.7

Q ss_pred             CCeeEEEEecCCCeEEEEe-CCeEEEEEcCCCceeee--ec------CCCCCeeEEEEecC--CCcEEEEE-e------C
Q 001311          807 EAVPCFALSKNDSYVMSAS-GGKISLFNMMTFKTMAT--FM------PPPPAATFLAFHPQ--DNNIIAIG-M------D  868 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s-dg~I~iwd~~~~~~~~~--~~------~~~~~i~~l~~sp~--d~~~lasg-~------~  868 (1102)
                      ...++|+|.||++++++-. .|.|++++..++.....  +.      .-......|+|+|+  ...+|... +      .
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            4578999999999999886 79999999877654322  21      11345788999983  12333332 1      0


Q ss_pred             C----Cc--EEEEEeecce--------eeeee---ccccccceeEEEecCCCEEEEEcC
Q 001311          869 D----SS--IQIYNVRVDE--------VKSKL---KGHSKRITGLAFSHALNVLVSSGA  910 (1102)
Q Consensus       869 d----g~--v~vwd~~~~~--------~~~~l---~~h~~~V~~l~~s~d~~~l~s~s~  910 (1102)
                      +    ..  |..+......        .+..+   ..|.  ...|+|.|||.+.++.+.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQ--SGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCC--EEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeeccccccccc--ccceeEcCCCCEEEEecC
Confidence            1    12  3333332211        11111   1244  367999999998887774

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.92  E-value=3.7  Score=41.30  Aligned_cols=72  Identities=8%  Similarity=0.052  Sum_probs=45.6

Q ss_pred             CCeeEEEEecCCCeEEEEe----C------------CeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEE-EEEeCC
Q 001311          807 EAVPCFALSKNDSYVMSAS----G------------GKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII-AIGMDD  869 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~s----d------------g~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~l-asg~~d  869 (1102)
                      .....+++..++.++++-.    +            +...+|........ .....-...+.|+++| |+++| ++-+..
T Consensus       150 ~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~-~~~~~l~~pNGI~~s~-d~~~lyVa~t~~  227 (340)
T d1v04a_         150 PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVR-VVAEGFDFANGINISP-DGKYVYIAELLA  227 (340)
T ss_dssp             SSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEE-EEEEEESSEEEEEECT-TSSEEEEEEGGG
T ss_pred             cCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceE-EEcCCCCccceeEECC-CCCEEEEEeCCC
Confidence            4467888889998888831    1            22344444443332 2222234588999999 66555 455567


Q ss_pred             CcEEEEEeecc
Q 001311          870 SSIQIYNVRVD  880 (1102)
Q Consensus       870 g~v~vwd~~~~  880 (1102)
                      +.|++|++...
T Consensus       228 ~~i~~y~~~~~  238 (340)
T d1v04a_         228 HKIHVYEKHAN  238 (340)
T ss_dssp             TEEEEEEECTT
T ss_pred             CeEEEEEeCCC
Confidence            89999998754

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=92.77  E-value=0.011  Score=51.00  Aligned_cols=77  Identities=17%  Similarity=0.280  Sum_probs=59.7

Q ss_pred             hhHHHHHhHhHHHhcCCCHHHHHHHHHhhcccccccCHHHHHHHHHHhcccccccccccccCCC----chhHH---HHHH
Q 001311           60 IFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLTLENFRENEQLSKYGD----TKSAR---SIML  132 (1102)
Q Consensus        60 ~~~~i~~q~~~Ell~~~~~~~a~~~l~~~~~~l~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~----~~~~R---~~l~  132 (1102)
                      ++|.++-+.||||+..|. .+|..++.+.-..+...+.+++++|+.+.+..+..+++....++.    ...+|   ..|+
T Consensus        29 lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl  107 (134)
T d2j49a1          29 IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLLL  107 (134)
T ss_dssp             HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHHHHHHH
Confidence            999999999999999865 679999988766666667888999999998888887777666655    23333   5566


Q ss_pred             HHHHh
Q 001311          133 VELKK  137 (1102)
Q Consensus       133 ~~l~~  137 (1102)
                      ..|++
T Consensus       108 ~fL~~  112 (134)
T d2j49a1         108 YFLNE  112 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66655

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=3.7  Score=39.96  Aligned_cols=219  Identities=11%  Similarity=0.030  Sum_probs=102.7

Q ss_pred             CeEEEEEcCCCce--eeeecCCCCCeeEEEEecCCCcEEEEEeCC---------CcEEEEEeecceeeeeecccccccee
Q 001311          827 GKISLFNMMTFKT--MATFMPPPPAATFLAFHPQDNNIIAIGMDD---------SSIQIYNVRVDEVKSKLKGHSKRITG  895 (1102)
Q Consensus       827 g~I~iwd~~~~~~--~~~~~~~~~~i~~l~~sp~d~~~lasg~~d---------g~v~vwd~~~~~~~~~l~~h~~~V~~  895 (1102)
                      ..+.+||..+.+-  +..+......- +++. - ++++++.|+..         ..+.+||..+.+....-......-..
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~-~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~   95 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRI   95 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTC
T ss_pred             ceEEEEECCCCeEEECCCCCCcccee-EEEE-E-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecce
Confidence            3588999887543  22232222222 2222 2 56677776531         36778887664432211111111111


Q ss_pred             EEEecCCCEEEEEcCCCc-----EEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE-e-----CCeEE
Q 001311          896 LAFSHALNVLVSSGADSQ-----LCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV-H-----ETQLA  964 (1102)
Q Consensus       896 l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~-~-----d~~i~  964 (1102)
                      .+...+++.++.++.++.     ...++..+.....   ......    ...-..+... +++.++.+ .     ...+.
T Consensus        96 ~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~  167 (288)
T d1zgka1          96 GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHL---VAPMLT----RRIGVGVAVL-NRLLYAVGGFDGTNRLNSAE  167 (288)
T ss_dssp             EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEE---CCCCSS----CCBSCEEEEE-TTEEEEECCBCSSCBCCCEE
T ss_pred             eccccceeeEEecceecccccceeeeeccccCcccc---cccccc----ccccceeeee-eecceEecCcccccccceEE
Confidence            222336666666655443     4456665533211   111100    0011222222 44444443 2     24688


Q ss_pred             EEEcCCceEeeeeccCCCCCCeeEEEEcCCCcEEEEEeCC-----CeEEEEEcCCceeEEEeCCCcccCCCCCCCcccce
Q 001311          965 IFETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLD-----ATVCVFSAANLKLRCRINPSAYLPAGVSSSNVHPL 1039 (1102)
Q Consensus       965 iwd~~~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~D-----g~I~vwd~~~~~~~~~~~~~~~~~~gh~~~~v~~~ 1039 (1102)
                      .||..+.+....-.. .....-.+++. .++++++.++.+     ....++|..+.+....-.    .+...    ... 
T Consensus       168 ~~d~~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~r----~~~-  236 (288)
T d1zgka1         168 CYYPERNEWRMITAM-NTIRSGAGVCV-LHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP----MKHRR----SAL-  236 (288)
T ss_dssp             EEETTTTEEEECCCC-SSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC----CSSCC----BSC-
T ss_pred             Eeecccccccccccc-ccccccccccc-eeeeEEEecCccccccccceeeeeecceeeecccC----ccCcc----cce-
Confidence            899887765433221 11112222232 245666666544     346778887776543211    11110    111 


Q ss_pred             EEEecCCCCCEEEEEecCCc-----EEEEeccCCC
Q 001311         1040 VIAAHPQEPNEFALGLSDGG-----VHVFEPLESE 1069 (1102)
Q Consensus      1040 ~v~f~p~d~~~l~s~~~Dg~-----v~vW~~~~~~ 1069 (1102)
                      +++..  ++++++.|+.++.     |.+||+.+.+
T Consensus       237 ~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         237 GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             EEEEE--CCEEEEEecCCCCeecceEEEEECCCCE
Confidence            23333  4688888877653     7889988865

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=91.42  E-value=4.7  Score=36.19  Aligned_cols=167  Identities=14%  Similarity=0.117  Sum_probs=100.2

Q ss_pred             EEEEEcCCCceeeeecCCC-CCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeee--eeccc-------cccceeEEE
Q 001311          829 ISLFNMMTFKTMATFMPPP-PAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKS--KLKGH-------SKRITGLAF  898 (1102)
Q Consensus       829 I~iwd~~~~~~~~~~~~~~-~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~--~l~~h-------~~~V~~l~~  898 (1102)
                      |.+-++...-.-..+.... -.|.++++.  |.+.+.+|+....+.+|-++.|++..  .+.+.       .+-|..+.|
T Consensus        84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~  161 (313)
T d2hu7a1          84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF  161 (313)
T ss_dssp             EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred             EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence            5566655322223333222 345666664  78899999999999999999887533  22221       123344433


Q ss_pred             e-cCCCEEEEEcC-CCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEEE----eCCeEEEEEcCCce
Q 001311          899 S-HALNVLVSSGA-DSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVV----HETQLAIFETTKLE  972 (1102)
Q Consensus       899 s-~d~~~l~s~s~-Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~----~d~~i~iwd~~~~~  972 (1102)
                      - +..+-+.++.- .|.++|++-..                   +++.....+++.+. ++.    .+....-+|..+++
T Consensus       162 ~~g~~~sfF~adl~SG~lri~tpke-------------------GS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~  221 (313)
T d2hu7a1         162 FGGGRVSLFTSNLSSGGLRVFDSGE-------------------GSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS  221 (313)
T ss_dssp             EETTEEEEEEEETTTEEEEEECCSS-------------------EEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred             ecCCcceEEEEecccCCEEEecCCC-------------------CcccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence            2 33333444544 66677766544                   24566667777776 432    22333356888776


Q ss_pred             EeeeeccCC-----CCCCeeEEEEcCCCcEEEEEeCCCeEEEEEcCCceeEE
Q 001311          973 CVKQWVPRE-----SSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRC 1019 (1102)
Q Consensus       973 ~~~~~~~~~-----h~~~v~~l~~spd~~~l~s~s~Dg~I~vwd~~~~~~~~ 1019 (1102)
                      ..+.-.+.-     ..-.|+-+-+.||+++++.+-.||.-++|.  +|+.+.
T Consensus       222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in  271 (313)
T d2hu7a1         222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVE  271 (313)
T ss_dssp             EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEEC
T ss_pred             eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEec
Confidence            554322110     134677778999999999999999999987  666664

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.63  E-value=7.9  Score=37.38  Aligned_cols=105  Identities=14%  Similarity=0.041  Sum_probs=53.7

Q ss_pred             CCCeEEEEe-C-----CeEEEEEcCCCceeeeecC-CCCCeeEEEEecCCCcEEEEEeCCC-----cEEEEEeecceeee
Q 001311          817 NDSYVMSAS-G-----GKISLFNMMTFKTMATFMP-PPPAATFLAFHPQDNNIIAIGMDDS-----SIQIYNVRVDEVKS  884 (1102)
Q Consensus       817 d~~~las~s-d-----g~I~iwd~~~~~~~~~~~~-~~~~i~~l~~sp~d~~~lasg~~dg-----~v~vwd~~~~~~~~  884 (1102)
                      ++..++.|+ +     ..+..||..+.+....-.. ......+++..  ++++++.|+.++     ...+||..+.+...
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~  225 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  225 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeec
Confidence            444555553 2     3478888876543322111 11122233333  566777776553     56677776654332


Q ss_pred             eeccccccceeEEEecCCCEEEEEcCCCc-----EEEEEcCCCc
Q 001311          885 KLKGHSKRITGLAFSHALNVLVSSGADSQ-----LCVWSSDGWE  923 (1102)
Q Consensus       885 ~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----i~vwd~~~~~  923 (1102)
                      .-.........-+...++++++.|+.++.     |.+||+++.+
T Consensus       226 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~  269 (288)
T d1zgka1         226 VAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT  269 (288)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred             ccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence            21111222222222347788888876543     7788888754

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.99  E-value=8.8  Score=38.81  Aligned_cols=179  Identities=12%  Similarity=0.115  Sum_probs=102.3

Q ss_pred             CCeeEEEEecCCCeEEEEeCCeEEEEEcCCC---------ceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEe
Q 001311          807 EAVPCFALSKNDSYVMSASGGKISLFNMMTF---------KTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNV  877 (1102)
Q Consensus       807 ~~i~~l~~s~d~~~las~sdg~I~iwd~~~~---------~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~  877 (1102)
                      ....-+++++...+++.|+...+.|.....-         ......+..-..|..++|+. |  .|+.. .++.+..++.
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vafs~-d--~l~v~-~~~~l~~~~~  112 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCFHG-D--QVLVS-TRNALYSLDL  112 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEEET-T--EEEEE-ESSEEEEEES
T ss_pred             cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEeeC-C--EEEEE-eCCCEEEEEe
Confidence            3456788888888888888667778774311         00001111123589999986 3  35444 4566888877


Q ss_pred             ecceeeeeeccccccceeEEEecCCCEEEEEcCCCcEEEEEcCCCccccee----eeecCCCCCCCCCCCcEEEEccCCc
Q 001311          878 RVDEVKSKLKGHSKRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNR----FLQIPTGRTPTAQSDTRVQFHQDQI  953 (1102)
Q Consensus       878 ~~~~~~~~l~~h~~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~v~~~~~spdg~  953 (1102)
                      .+-........-..++.++.+.|.  .++....++.+.++++..++.....    .... .      ..+.+++|++.|+
T Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~-~------~~~~~v~ws~kgk  183 (381)
T d1xipa_         113 EELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDV-T------NSQLAVLLKDRSF  183 (381)
T ss_dssp             SSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEE-C------SSEEEEEETTSCE
T ss_pred             eccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEe-c------CCceEEEEeCCcE
Confidence            653323232223455777777664  5666777888999999886532211    0111 1      2467788888888


Q ss_pred             EEEEEeCCeEEEE-EcCCceEeeeecc-CCCCCCeeEEEEcCCCcEEEEE
Q 001311          954 HFLVVHETQLAIF-ETTKLECVKQWVP-RESSAPITHATFSCDSQLVYAC 1001 (1102)
Q Consensus       954 ~l~~~~d~~i~iw-d~~~~~~~~~~~~-~~h~~~v~~l~~spd~~~l~s~ 1001 (1102)
                      .++++..+...+. ++..-.   .+.. ......|.+|.|-.+..++++-
T Consensus       184 q~v~~~g~~~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         184 QSFAWRNGEMEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEEEETTEEEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEEEeCCCceeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence            8877644333321 111110   1110 1224578899998887777654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.66  E-value=7.4  Score=39.39  Aligned_cols=136  Identities=10%  Similarity=-0.016  Sum_probs=82.2

Q ss_pred             CeeEEEEecCCCeEEEEeCCeEEEEEcCCCceeeeecCCCCCeeEEEEecCCCcEEEEEeCCCcEEEEEeecceeeeeec
Q 001311          808 AVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLK  887 (1102)
Q Consensus       808 ~i~~l~~s~d~~~las~sdg~I~iwd~~~~~~~~~~~~~~~~i~~l~~sp~d~~~lasg~~dg~v~vwd~~~~~~~~~l~  887 (1102)
                      .|..++|+.|  .++...++.+..++..+.............+..+.+.|   ..++....+|.+.++++..++......
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence            4788899755  57776778888888877555544444456678888877   356667789999999998775432221


Q ss_pred             c-----ccccceeEEEecCCCEEEEEcCCCcEEEE-EcCCCcccceeeeecCCCCCCCCCCCcEEEEccCCcEEEE
Q 001311          888 G-----HSKRITGLAFSHALNVLVSSGADSQLCVW-SSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLV  957 (1102)
Q Consensus       888 ~-----h~~~V~~l~~s~d~~~l~s~s~Dg~i~vw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  957 (1102)
                      +     -.+.+.+++|++.|+.++++..++ ..+- ++....     .+   .........+.++.|-.+..++++
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~-----~~---~~p~~~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPS-----EL---EELPVEEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCH-----HH---HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCcc-----cc---CCCcCCCcceeEEEEecCceEEEE
Confidence            1     235577788887777777764332 2211 111110     01   111111135677888777777765

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.28  E-value=5.8  Score=41.65  Aligned_cols=113  Identities=8%  Similarity=0.051  Sum_probs=62.2

Q ss_pred             ccceeEEEecCCCEEEEEcCCCcEEEEEcCCCcccceeeeecCCCCCCCCCCCcEEEEccC---CcEEEEE-e-------
Q 001311          891 KRITGLAFSHALNVLVSSGADSQLCVWSSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQD---QIHFLVV-H-------  959 (1102)
Q Consensus       891 ~~V~~l~~s~d~~~l~s~s~Dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spd---g~~l~~~-~-------  959 (1102)
                      ..-++|+|.|||++|++--.+|.|++++..+++.....-+...............++|+|+   ..++..+ .       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            3567999999999998876679999998877654322211111111112245678999985   3344332 1       


Q ss_pred             C----C--eEEEEEcCCce-------EeeeeccCCCCCCeeEEEEcCCCcEEEEEeC
Q 001311          960 E----T--QLAIFETTKLE-------CVKQWVPRESSAPITHATFSCDSQLVYACFL 1003 (1102)
Q Consensus       960 d----~--~i~iwd~~~~~-------~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~ 1003 (1102)
                      +    .  .+..+......       .+..............|.|.|||.++++.++
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            0    1  13333322211       1111111111233578999999998777664

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=84.01  E-value=14  Score=33.01  Aligned_cols=209  Identities=12%  Similarity=0.159  Sum_probs=105.7

Q ss_pred             CCCeEEEEEecCCeEEEEeCCCCeeEEeeeeeeeccCCCCccccccccCCCCCCeEEEEEccCCCeEEEEECCCeEEEEE
Q 001311          357 VQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACSMPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYS  436 (1102)
Q Consensus       357 dg~~llasg~~d~~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~spdg~~las~~~d~~v~vwd  436 (1102)
                      ++..+++.+...|.|.++-+..++.+...                      ..+|....- |..      +-|..+.+-|
T Consensus        24 ~~d~ll~~~~seG~vni~~l~g~~~vkLt----------------------kePI~~~~~-Pk~------~ldfi~f~RD   74 (313)
T d2hu7a1          24 DGDKLLVVGFSEGSVNAYLYDGGETVKLN----------------------REPINSVLD-PHY------GVGRVILVRD   74 (313)
T ss_dssp             TTTEEEEEEEETTEEEEEEESSSSCEECC----------------------SSCCSEECE-ECT------TBSEEEEEEE
T ss_pred             cCCcEEEEEeccceEEEEEEeCCEEEEEe----------------------cccccCcCC-Ccc------CcceEEEEee
Confidence            34457888888899999998887766520                      112221111 110      1122344445


Q ss_pred             ccCCceeeeEEE-----------eeccccCEEEEEEcCCCCeeEEEEecCCCcEEEEeCCCCeeeE--Eeec-------C
Q 001311          437 YHGGDEVRQHLE-----------IDAHVGGVNDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQY--IFEG-------H  496 (1102)
Q Consensus       437 ~~~~~~~~~~~~-----------l~~h~~~V~~v~~s~d~~~~~l~s~~~d~~i~vWd~~~~~~~~--~~~~-------h  496 (1102)
                      +..|+..+.+..           +.. ..+|.-+...-|++. ++++|+......+|-++.|+...  .+.+       .
T Consensus        75 V~kGkE~Hai~~~Nlk~~GEE~~i~s-pk~vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~  152 (313)
T d2hu7a1          75 VSKGAEQHALFKVNTSRPGEEQRLEA-VKPMRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIR  152 (313)
T ss_dssp             CSTTSCCEEEEEEETTSTTCEEECTT-SCSBEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEE
T ss_pred             hhcCcceeeEEEEccCCCCeeeEecC-CceEEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEecc
Confidence            555544332221           111 123444444456776 66777777778888888887543  2221       1


Q ss_pred             CCCeEEEeeeecCCccEEEEEeC-CCeEEEEEcCCCCCeeeecCCCCee----------eEEEEccCCce---------e
Q 001311          497 EAPVYSVCPHHKENIQFIFSTAL-DGKIKAWLYDNLGSRVDYEAPGRWC----------TTMAYSADGTR---------T  556 (1102)
Q Consensus       497 ~~~v~~v~~~~~~~~~~l~s~s~-dg~i~~wd~~~~~~~~~~~~~~~~v----------~~~~~s~~~~~---------~  556 (1102)
                      ...|..+.+. .++..-++++.. .|.+++++...+.....+...+..|          .-+.+.+....         -
T Consensus       153 ~d~I~G~g~~-~g~~~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd  231 (313)
T d2hu7a1         153 GDLIAGLGFF-GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKD  231 (313)
T ss_dssp             TTEEEEEEEE-ETTEEEEEEEETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCH
T ss_pred             CCeEEEEeee-cCCcceEEEEecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCccc
Confidence            2334444442 233344555555 7888888766543333222222222          11222222110         0


Q ss_pred             eeccccCceeEEEEcCCCCEEEEEeCCCeEEEEECCCcceEEE
Q 001311          557 YQGFRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTS  599 (1102)
Q Consensus       557 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  599 (1102)
                      +.......+..+-+.|++++++.+-.||.-++|.  +|+.+..
T Consensus       232 ~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         232 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             ceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEecC
Confidence            1111122344455788888777777888877776  4554443